BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016187
(394 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 142 bits (358), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 97/332 (29%), Positives = 166/332 (50%), Gaps = 10/332 (3%)
Query: 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
+GHS V VA SP D +A+ D W N G + GH SV+ +AF
Sbjct: 215 QTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVNGVAFRP 272
Query: 118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177
DGQ +AS D V++W+ +G L TL G V V++ P G + + S+D TV +WN
Sbjct: 273 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 331
Query: 178 ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE 237
+ +L +GH SSV F+PDG+TI + SDD T+++WN ++G+ + + GH
Sbjct: 332 RN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVR 389
Query: 238 GLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGS 297
G + S D S S D +V + N G+++ +L H+ S+ + FS A+ S
Sbjct: 390 G---VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASAS 445
Query: 298 MDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTF 357
D+ + +W+ L ++ H V + + + + + D V++W+ +G ++T
Sbjct: 446 DDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL 504
Query: 358 SGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389
+GH +++ ++ S + S S D T +++
Sbjct: 505 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 536
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/332 (29%), Positives = 164/332 (49%), Gaps = 10/332 (3%)
Query: 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
+GHS V+ VA SP D +A+ D W N G + GH SV +AFS
Sbjct: 51 QTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSP 108
Query: 118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177
DGQ +AS D V++W+ +G L TL G V V++ P G + + S+D TV +WN
Sbjct: 109 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 167
Query: 178 ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE 237
+ L +GH SSV F+PDG+TI + SDD T+++WN ++G+ + + GH
Sbjct: 168 RN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVR 225
Query: 238 GLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGS 297
G + S D S S D +V + N G+++ +L H+ S+ + F A+ S
Sbjct: 226 G---VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIASAS 281
Query: 298 MDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTF 357
D+ + +W+ L ++ H V + + + + + D V++W+ +G ++T
Sbjct: 282 DDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQHLQTL 340
Query: 358 SGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389
+GH ++ ++ S + S S D T +++
Sbjct: 341 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 372
Score = 139 bits (349), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 162/330 (49%), Gaps = 10/330 (3%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
HS V VA SP D +A+ D W N G + GH SV +AFS DG
Sbjct: 12 LEAHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDG 69
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
Q +AS D V++W+ +G L TL G V V++ P G + + S+D TV +WN +
Sbjct: 70 QTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 128
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
L +GH SSV F+PDG+TI + SDD T+++WN ++G+ + + GH G
Sbjct: 129 -GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWG- 185
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMD 299
+ S D S S D +V + N G+++ +L H+ S+ + FS A+ S D
Sbjct: 186 --VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD 242
Query: 300 QKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSG 359
+ + +W+ L ++ H V + + + + + D V++W+ +G ++T +G
Sbjct: 243 KTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTG 301
Query: 360 HRDAIQAISVSAHQDFLVSVSLDGTARVFE 389
H ++ ++ S + S S D T +++
Sbjct: 302 HSSSVWGVAFSPDGQTIASASDDKTVKLWN 331
Score = 125 bits (313), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 82/289 (28%), Positives = 147/289 (50%), Gaps = 8/289 (2%)
Query: 101 SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPR 160
+ ++ H SV +AFS DGQ +AS D V++W+ +G L TL G V V++ P
Sbjct: 10 NRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPD 68
Query: 161 GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP 220
G + + S+D TV +WN + L +GH SSV F+PDG+TI + SDD T+++WN
Sbjct: 69 GQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN- 126
Query: 221 KSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDS 280
++G+ + + GH G + S D S S D +V + N G+++ +L H+ S
Sbjct: 127 RNGQLLQTLTGHSSSVWG---VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSS 182
Query: 281 IECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVD 340
+ + FS A+ S D+ + +W+ L ++ H V + + + + + D
Sbjct: 183 VWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD 242
Query: 341 GKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389
V++W+ +G ++T +GH ++ ++ + S S D T +++
Sbjct: 243 KTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN 290
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 104/202 (51%), Gaps = 12/202 (5%)
Query: 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
+GHS V VA SP D +A+ D W N G + GH SV +AFS
Sbjct: 379 QTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSP 436
Query: 118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177
D Q +AS D V++W+ +G L TL G V V++ P G + + S+D TV +WN
Sbjct: 437 DDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 495
Query: 178 ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH----- 232
+ L +GH SSV F+PDG+TI + SDD T+++WN ++G+ + + GH
Sbjct: 496 RN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVW 553
Query: 233 --PYHTEGLTCLTISADSTLAL 252
+ +G T + S+D T+ L
Sbjct: 554 GVAFSPDGQTIASASSDKTVKL 575
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/294 (24%), Positives = 151/294 (51%), Gaps = 10/294 (3%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
+ GH +VSS+ FS +G+ LAS D L++IW G + T+ G G+ V+W +
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
++++ S+D T+ +W+ L GH + V C +F P I +GS D ++R+W+ K+
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTD-SI 281
G+ + + P H++ ++ + + D +L +S S DG + + +G+ + +L+ + +
Sbjct: 142 GKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Query: 282 ECIGFSRSSPWAATGSMDQKLIIWDLQH-SLPRSTCDHEDGVTCLMW---LGTSKYVVTG 337
+ FS + + ++D L +WD ++ H++ C+ + K++V+G
Sbjct: 199 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 258
Query: 338 CVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSL--DGTARVFE 389
D V +W+ + + V+ GH D + + + ++ + S +L D T ++F+
Sbjct: 259 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLFK 312
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 113/229 (49%), Gaps = 5/229 (2%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
LK TL G V V + P G + + S D + +W A + SGH ++ ++
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
D + + SDD TL++W+ SG+ + ++GH + + C + S L +SGS D SV
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 134
Query: 261 HMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHED 320
+ ++ TGK + +L +H+D + + F+R + S D IWD T +D
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 194
Query: 321 G--VTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAI 367
V+ + + KY++ +D +++WD G C++T++GH++ I
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 119/252 (47%), Gaps = 6/252 (2%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
+GH+ V SV SP + +A+ D W G + I GHK +S +A+S D
Sbjct: 22 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
LL S D ++IWD SSG TL+G V +++P+ +++++GS D +V +W+
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
L H V+ F DG I + S D R+W+ SG+ + + +
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 198
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECI--GFSRS-SPWAATG 296
+ + S + L+ + D ++ + + + GK + + H + CI FS + W +G
Sbjct: 199 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 258
Query: 297 SMDQKLIIWDLQ 308
S D + IW+LQ
Sbjct: 259 SEDNLVYIWNLQ 270
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 1/158 (0%)
Query: 235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAA 294
HT+ ++ + S + S S D + + GK ++ H I + +S S
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 295 TGSMDQKLIIWDLQHSLPRSTCD-HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDC 353
+ S D+ L IWD+ T H + V C + S +V+G D VR+WD +G C
Sbjct: 85 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 144
Query: 354 VRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391
++T H D + A+ + +VS S DG R+++ A
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 45/87 (51%)
Query: 308 QHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAI 367
++L + H V+ + + +++ + D +++W + G +T SGH+ I +
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 368 SVSAHQDFLVSVSLDGTARVFEIADFK 394
+ S+ + LVS S D T ++++++ K
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGK 101
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 60 FSGHSDEVYSVAC--SPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
++GH +E Y + S T + +G D+ + W + + ++QGH D V S A
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 292
Query: 118 DGQLLASGGLD 128
++AS L+
Sbjct: 293 TENIIASAALE 303
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 152/294 (51%), Gaps = 10/294 (3%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
+ GH +VSS+ FS +G+ LAS D L++IW G + T+ G G+ V+W +
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
++++ S+D T+ +W+ L GH + V C +F P I +GS D ++R+W+ K+
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTD-SI 281
G+ + + P H++ ++ + + D +L +S S DG + + +G+ + +L+ + +
Sbjct: 142 GKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Query: 282 ECIGFSRSSPWAATGSMDQKLIIWDL-QHSLPRSTCDHEDGVTCLMW---LGTSKYVVTG 337
+ FS + + ++D L +WD + ++ H++ C+ + K++V+G
Sbjct: 199 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 258
Query: 338 CVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSL--DGTARVFE 389
D V +W+ + + V+ GH D + + + ++ + S +L D T ++++
Sbjct: 259 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLYK 312
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 113/229 (49%), Gaps = 5/229 (2%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
LK TL G V V + P G + + S D + +W A + SGH ++ ++
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
D + + SDD TL++W+ SG+ + ++GH + + C + S L +SGS D SV
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 134
Query: 261 HMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHED 320
+ ++ TGK + +L +H+D + + F+R + S D IWD T +D
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 194
Query: 321 G--VTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAI 367
V+ + + KY++ +D +++WD G C++T++GH++ I
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 119/252 (47%), Gaps = 6/252 (2%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
+GH+ V SV SP + +A+ D W G + I GHK +S +A+S D
Sbjct: 22 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
LL S D ++IWD SSG TL+G V +++P+ +++++GS D +V +W+
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
L H V+ F DG I + S D R+W+ SG+ + + +
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 198
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECI--GFSRS-SPWAATG 296
+ + S + L+ + D ++ + + + GK + + H + CI FS + W +G
Sbjct: 199 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 258
Query: 297 SMDQKLIIWDLQ 308
S D + IW+LQ
Sbjct: 259 SEDNLVYIWNLQ 270
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 1/158 (0%)
Query: 235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAA 294
HT+ ++ + S + S S D + + GK ++ H I + +S S
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 295 TGSMDQKLIIWDLQHSLPRSTCD-HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDC 353
+ S D+ L IWD+ T H + V C + S +V+G D VR+WD +G C
Sbjct: 85 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 144
Query: 354 VRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391
++T H D + A+ + +VS S DG R+++ A
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 45/87 (51%)
Query: 308 QHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAI 367
++L + H V+ + + +++ + D +++W + G +T SGH+ I +
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 368 SVSAHQDFLVSVSLDGTARVFEIADFK 394
+ S+ + LVS S D T ++++++ K
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGK 101
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 60 FSGHSDEVYSVAC--SPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
++GH +E Y + S T + +G D+ + W + + ++QGH D V S A
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 292
Query: 118 DGQLLASGGLD 128
++AS L+
Sbjct: 293 TENIIASAALE 303
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 146/286 (51%), Gaps = 8/286 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
+ GH +VSS+ FS +G+ LAS D L++IW G + T+ G G+ V+W +
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 100
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
++++ S+D T+ +W+ L GH + V C +F P I +GS D ++R+W+ K+
Sbjct: 101 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 160
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTD-SI 281
G+ + + P H++ ++ + + D +L +S S DG + + +G+ + +L+ + +
Sbjct: 161 GKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 217
Query: 282 ECIGFSRSSPWAATGSMDQKLIIWDLQH-SLPRSTCDHEDGVTCLMW---LGTSKYVVTG 337
+ FS + + ++D L +WD ++ H++ C+ + K++V+G
Sbjct: 218 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 277
Query: 338 CVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDG 383
D V +W+ + + V+ GH D + + + ++ + S +L+
Sbjct: 278 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 323
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 112/229 (48%), Gaps = 5/229 (2%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
LK TL G V V + P G + + S D + +W A + SGH ++ ++
Sbjct: 37 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 96
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
D + + SDD TL++W+ SG+ + ++GH + + C + S L +SGS D SV
Sbjct: 97 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 153
Query: 261 HMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQ--HSLPRSTCDH 318
+ ++ TGK + +L +H+D + + F+R + S D IWD L D
Sbjct: 154 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 213
Query: 319 EDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAI 367
V+ + + KY++ +D +++WD G C++T++GH++ I
Sbjct: 214 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 262
Score = 104 bits (260), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 136/300 (45%), Gaps = 12/300 (4%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
+GH+ V SV SP + +A+ D W G + I GHK +S +A+S D
Sbjct: 41 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
LL S D ++IWD SSG TL+G V +++P+ +++++GS D +V +W+
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 159
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
L H V+ F DG I + S D R+W+ SG+ + + +
Sbjct: 160 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 217
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECI--GFSRS-SPWAATG 296
+ + S + L+ + D ++ + + + GK + + H + CI FS + W +G
Sbjct: 218 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 277
Query: 297 SMDQKLIIWDLQ-HSLPRSTCDHEDGVTCLMWLGTSKYVVTGCV--DGKVRVWDSLSGDC 353
S D + IW+LQ + + H D V T + + + D +++W S DC
Sbjct: 278 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS---DC 334
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 1/158 (0%)
Query: 235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAA 294
HT+ ++ + S + S S D + + GK ++ H I + +S S
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 103
Query: 295 TGSMDQKLIIWDLQHSLPRSTCD-HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDC 353
+ S D+ L IWD+ T H + V C + S +V+G D VR+WD +G C
Sbjct: 104 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 163
Query: 354 VRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391
++T H D + A+ + +VS S DG R+++ A
Sbjct: 164 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 201
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/108 (20%), Positives = 53/108 (49%)
Query: 287 SRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVW 346
+R+ P ++ + K ++L + H V+ + + +++ + D +++W
Sbjct: 13 ARAQPTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 72
Query: 347 DSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADFK 394
+ G +T SGH+ I ++ S+ + LVS S D T ++++++ K
Sbjct: 73 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK 120
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 146/286 (51%), Gaps = 8/286 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
+ GH +VSS+ FS +G+ LAS D L++IW G + T+ G G+ V+W +
Sbjct: 43 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 102
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
++++ S+D T+ +W+ L GH + V C +F P I +GS D ++R+W+ K+
Sbjct: 103 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 162
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTD-SI 281
G+ + + P H++ ++ + + D +L +S S DG + + +G+ + +L+ + +
Sbjct: 163 GKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 219
Query: 282 ECIGFSRSSPWAATGSMDQKLIIWDLQH-SLPRSTCDHEDGVTCLMW---LGTSKYVVTG 337
+ FS + + ++D L +WD ++ H++ C+ + K++V+G
Sbjct: 220 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 279
Query: 338 CVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDG 383
D V +W+ + + V+ GH D + + + ++ + S +L+
Sbjct: 280 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 325
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 113/229 (49%), Gaps = 5/229 (2%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
LK TL G V V + P G + + S D + +W A + SGH ++ ++
Sbjct: 39 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 98
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
D + + SDD TL++W+ SG+ + ++GH + + C + S L +SGS D SV
Sbjct: 99 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 155
Query: 261 HMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHED 320
+ ++ TGK + +L +H+D + + F+R + S D IWD T +D
Sbjct: 156 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 215
Query: 321 G--VTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAI 367
V+ + + KY++ +D +++WD G C++T++GH++ I
Sbjct: 216 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 264
Score = 104 bits (260), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 136/300 (45%), Gaps = 12/300 (4%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
+GH+ V SV SP + +A+ D W G + I GHK +S +A+S D
Sbjct: 43 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 101
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
LL S D ++IWD SSG TL+G V +++P+ +++++GS D +V +W+
Sbjct: 102 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 161
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
L H V+ F DG I + S D R+W+ SG+ + + +
Sbjct: 162 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 219
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECI--GFSRS-SPWAATG 296
+ + S + L+ + D ++ + + + GK + + H + CI FS + W +G
Sbjct: 220 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 279
Query: 297 SMDQKLIIWDLQ-HSLPRSTCDHEDGVTCLMWLGTSKYVVTGCV--DGKVRVWDSLSGDC 353
S D + IW+LQ + + H D V T + + + D +++W S DC
Sbjct: 280 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS---DC 336
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 1/158 (0%)
Query: 235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAA 294
HT+ ++ + S + S S D + + GK ++ H I + +S S
Sbjct: 46 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 105
Query: 295 TGSMDQKLIIWDLQHSLPRSTCD-HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDC 353
+ S D+ L IWD+ T H + V C + S +V+G D VR+WD +G C
Sbjct: 106 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 165
Query: 354 VRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391
++T H D + A+ + +VS S DG R+++ A
Sbjct: 166 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 203
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/108 (20%), Positives = 53/108 (49%)
Query: 287 SRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVW 346
+R+ P ++ + K ++L + H V+ + + +++ + D +++W
Sbjct: 15 ARAQPTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 74
Query: 347 DSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADFK 394
+ G +T SGH+ I ++ S+ + LVS S D T ++++++ K
Sbjct: 75 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK 122
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 125 bits (314), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 146/285 (51%), Gaps = 8/285 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
+ GH +VSS+ FS +G+ LAS D L++IW G + T+ G G+ V+W +
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 95
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
++++ S+D T+ +W+ L GH + V C +F P I +GS D ++R+W+ K+
Sbjct: 96 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 155
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTD-SI 281
G+ + + P H++ ++ + + D +L +S S DG + + +G+ + +L+ + +
Sbjct: 156 GKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 212
Query: 282 ECIGFSRSSPWAATGSMDQKLIIWDLQH-SLPRSTCDHEDGVTCLMW---LGTSKYVVTG 337
+ FS + + ++D L +WD ++ H++ C+ + K++V+G
Sbjct: 213 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 272
Query: 338 CVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLD 382
D V +W+ + + V+ GH D + + + ++ + S +L+
Sbjct: 273 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 317
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 113/229 (49%), Gaps = 5/229 (2%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
LK TL G V V + P G + + S D + +W A + SGH ++ ++
Sbjct: 32 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 91
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
D + + SDD TL++W+ SG+ + ++GH + + C + S L +SGS D SV
Sbjct: 92 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 148
Query: 261 HMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHED 320
+ ++ TGK + +L +H+D + + F+R + S D IWD T +D
Sbjct: 149 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 208
Query: 321 G--VTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAI 367
V+ + + KY++ +D +++WD G C++T++GH++ I
Sbjct: 209 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 257
Score = 104 bits (260), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 136/300 (45%), Gaps = 12/300 (4%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
+GH+ V SV SP + +A+ D W G + I GHK +S +A+S D
Sbjct: 36 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 94
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
LL S D ++IWD SSG TL+G V +++P+ +++++GS D +V +W+
Sbjct: 95 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 154
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
L H V+ F DG I + S D R+W+ SG+ + + +
Sbjct: 155 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 212
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECI--GFSRS-SPWAATG 296
+ + S + L+ + D ++ + + + GK + + H + CI FS + W +G
Sbjct: 213 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 272
Query: 297 SMDQKLIIWDLQ-HSLPRSTCDHEDGVTCLMWLGTSKYVVTGCV--DGKVRVWDSLSGDC 353
S D + IW+LQ + + H D V T + + + D +++W S DC
Sbjct: 273 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS---DC 329
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 1/158 (0%)
Query: 235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAA 294
HT+ ++ + S + S S D + + GK ++ H I + +S S
Sbjct: 39 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 98
Query: 295 TGSMDQKLIIWDLQHSLPRSTCD-HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDC 353
+ S D+ L IWD+ T H + V C + S +V+G D VR+WD +G C
Sbjct: 99 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 158
Query: 354 VRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391
++T H D + A+ + +VS S DG R+++ A
Sbjct: 159 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 196
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 45/87 (51%)
Query: 308 QHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAI 367
++L + H V+ + + +++ + D +++W + G +T SGH+ I +
Sbjct: 29 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 88
Query: 368 SVSAHQDFLVSVSLDGTARVFEIADFK 394
+ S+ + LVS S D T ++++++ K
Sbjct: 89 AWSSDSNLLVSASDDKTLKIWDVSSGK 115
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 125 bits (314), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 146/285 (51%), Gaps = 8/285 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
+ GH +VSS+ FS +G+ LAS D L++IW G + T+ G G+ V+W +
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
++++ S+D T+ +W+ L GH + V C +F P I +GS D ++R+W+ K+
Sbjct: 79 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 138
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTD-SI 281
G+ + + P H++ ++ + + D +L +S S DG + + +G+ + +L+ + +
Sbjct: 139 GKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 195
Query: 282 ECIGFSRSSPWAATGSMDQKLIIWDLQH-SLPRSTCDHEDGVTCLMW---LGTSKYVVTG 337
+ FS + + ++D L +WD ++ H++ C+ + K++V+G
Sbjct: 196 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 255
Query: 338 CVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLD 382
D V +W+ + + V+ GH D + + + ++ + S +L+
Sbjct: 256 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 300
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 113/229 (49%), Gaps = 5/229 (2%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
LK TL G V V + P G + + S D + +W A + SGH ++ ++
Sbjct: 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 74
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
D + + SDD TL++W+ SG+ + ++GH + + C + S L +SGS D SV
Sbjct: 75 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 131
Query: 261 HMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHED 320
+ ++ TGK + +L +H+D + + F+R + S D IWD T +D
Sbjct: 132 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 191
Query: 321 G--VTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAI 367
V+ + + KY++ +D +++WD G C++T++GH++ I
Sbjct: 192 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 240
Score = 104 bits (260), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 136/300 (45%), Gaps = 12/300 (4%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
+GH+ V SV SP + +A+ D W G + I GHK +S +A+S D
Sbjct: 19 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
LL S D ++IWD SSG TL+G V +++P+ +++++GS D +V +W+
Sbjct: 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
L H V+ F DG I + S D R+W+ SG+ + + +
Sbjct: 138 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 195
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECI--GFSRS-SPWAATG 296
+ + S + L+ + D ++ + + + GK + + H + CI FS + W +G
Sbjct: 196 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 255
Query: 297 SMDQKLIIWDLQ-HSLPRSTCDHEDGVTCLMWLGTSKYVVTGCV--DGKVRVWDSLSGDC 353
S D + IW+LQ + + H D V T + + + D +++W S DC
Sbjct: 256 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS---DC 312
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 1/158 (0%)
Query: 235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAA 294
HT+ ++ + S + S S D + + GK ++ H I + +S S
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 81
Query: 295 TGSMDQKLIIWDLQHSLPRSTCD-HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDC 353
+ S D+ L IWD+ T H + V C + S +V+G D VR+WD +G C
Sbjct: 82 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 141
Query: 354 VRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391
++T H D + A+ + +VS S DG R+++ A
Sbjct: 142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 179
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 45/87 (51%)
Query: 308 QHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAI 367
++L + H V+ + + +++ + D +++W + G +T SGH+ I +
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 71
Query: 368 SVSAHQDFLVSVSLDGTARVFEIADFK 394
+ S+ + LVS S D T ++++++ K
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSSGK 98
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 125 bits (313), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 146/286 (51%), Gaps = 8/286 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
+ GH +VSS+ FS +G+ LAS D L++IW G + T+ G G+ V+W +
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
++++ S+D T+ +W+ L GH + V C +F P I +GS D ++R+W+ K+
Sbjct: 79 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 138
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTD-SI 281
G+ + + P H++ ++ + + D +L +S S DG + + +G+ + +L+ + +
Sbjct: 139 GKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 195
Query: 282 ECIGFSRSSPWAATGSMDQKLIIWDLQH-SLPRSTCDHEDGVTCLMW---LGTSKYVVTG 337
+ FS + + ++D L +WD ++ H++ C+ + K++V+G
Sbjct: 196 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 255
Query: 338 CVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDG 383
D V +W+ + + V+ GH D + + + ++ + S +L+
Sbjct: 256 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 301
Score = 108 bits (269), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 113/229 (49%), Gaps = 5/229 (2%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
LK TL G V V + P G + + S D + +W A + SGH ++ ++
Sbjct: 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 74
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
D + + SDD TL++W+ SG+ + ++GH + + C + S L +SGS D SV
Sbjct: 75 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 131
Query: 261 HMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHED 320
+ ++ TGK + +L +H+D + + F+R + S D IWD T +D
Sbjct: 132 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 191
Query: 321 G--VTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAI 367
V+ + + KY++ +D +++WD G C++T++GH++ I
Sbjct: 192 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 240
Score = 104 bits (260), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 136/300 (45%), Gaps = 12/300 (4%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
+GH+ V SV SP + +A+ D W G + I GHK +S +A+S D
Sbjct: 19 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
LL S D ++IWD SSG TL+G V +++P+ +++++GS D +V +W+
Sbjct: 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
L H V+ F DG I + S D R+W+ SG+ + + +
Sbjct: 138 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 195
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECI--GFSRS-SPWAATG 296
+ + S + L+ + D ++ + + + GK + + H + CI FS + W +G
Sbjct: 196 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 255
Query: 297 SMDQKLIIWDLQ-HSLPRSTCDHEDGVTCLMWLGTSKYVVTGCV--DGKVRVWDSLSGDC 353
S D + IW+LQ + + H D V T + + + D +++W S DC
Sbjct: 256 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS---DC 312
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 1/158 (0%)
Query: 235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAA 294
HT+ ++ + S + S S D + + GK ++ H I + +S S
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 81
Query: 295 TGSMDQKLIIWDLQHSLPRSTCD-HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDC 353
+ S D+ L IWD+ T H + V C + S +V+G D VR+WD +G C
Sbjct: 82 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 141
Query: 354 VRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391
++T H D + A+ + +VS S DG R+++ A
Sbjct: 142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 179
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 45/87 (51%)
Query: 308 QHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAI 367
++L + H V+ + + +++ + D +++W + G +T SGH+ I +
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 71
Query: 368 SVSAHQDFLVSVSLDGTARVFEIADFK 394
+ S+ + LVS S D T ++++++ K
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSSGK 98
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 125 bits (313), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 146/285 (51%), Gaps = 8/285 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
+ GH +VSS+ FS +G+ LAS D L++IW G + T+ G G+ V+W +
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
++++ S+D T+ +W+ L GH + V C +F P I +GS D ++R+W+ K+
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTD-SI 281
G+ + + P H++ ++ + + D +L +S S DG + + +G+ + +L+ + +
Sbjct: 145 GKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 201
Query: 282 ECIGFSRSSPWAATGSMDQKLIIWDLQH-SLPRSTCDHEDGVTCLMW---LGTSKYVVTG 337
+ FS + + ++D L +WD ++ H++ C+ + K++V+G
Sbjct: 202 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 261
Query: 338 CVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLD 382
D V +W+ + + V+ GH D + + + ++ + S +L+
Sbjct: 262 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 306
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 113/229 (49%), Gaps = 5/229 (2%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
LK TL G V V + P G + + S D + +W A + SGH ++ ++
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 80
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
D + + SDD TL++W+ SG+ + ++GH + + C + S L +SGS D SV
Sbjct: 81 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 137
Query: 261 HMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHED 320
+ ++ TGK + +L +H+D + + F+R + S D IWD T +D
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 197
Query: 321 G--VTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAI 367
V+ + + KY++ +D +++WD G C++T++GH++ I
Sbjct: 198 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 246
Score = 104 bits (259), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 136/300 (45%), Gaps = 12/300 (4%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
+GH+ V SV SP + +A+ D W G + I GHK +S +A+S D
Sbjct: 25 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
LL S D ++IWD SSG TL+G V +++P+ +++++GS D +V +W+
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
L H V+ F DG I + S D R+W+ SG+ + + +
Sbjct: 144 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 201
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECI--GFSRS-SPWAATG 296
+ + S + L+ + D ++ + + + GK + + H + CI FS + W +G
Sbjct: 202 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 261
Query: 297 SMDQKLIIWDLQ-HSLPRSTCDHEDGVTCLMWLGTSKYVVTGCV--DGKVRVWDSLSGDC 353
S D + IW+LQ + + H D V T + + + D +++W S DC
Sbjct: 262 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS---DC 318
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 1/158 (0%)
Query: 235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAA 294
HT+ ++ + S + S S D + + GK ++ H I + +S S
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 87
Query: 295 TGSMDQKLIIWDLQHSLPRSTCD-HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDC 353
+ S D+ L IWD+ T H + V C + S +V+G D VR+WD +G C
Sbjct: 88 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 147
Query: 354 VRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391
++T H D + A+ + +VS S DG R+++ A
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 185
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 45/87 (51%)
Query: 308 QHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAI 367
++L + H V+ + + +++ + D +++W + G +T SGH+ I +
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 368 SVSAHQDFLVSVSLDGTARVFEIADFK 394
+ S+ + LVS S D T ++++++ K
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGK 104
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 125 bits (313), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 146/286 (51%), Gaps = 8/286 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
+ GH +VSS+ FS +G+ LAS D L++IW G + T+ G G+ V+W +
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 74
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
++++ S+D T+ +W+ L GH + V C +F P I +GS D ++R+W+ K+
Sbjct: 75 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 134
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTD-SI 281
G+ + + P H++ ++ + + D +L +S S DG + + +G+ + +L+ + +
Sbjct: 135 GKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 191
Query: 282 ECIGFSRSSPWAATGSMDQKLIIWDLQH-SLPRSTCDHEDGVTCLMW---LGTSKYVVTG 337
+ FS + + ++D L +WD ++ H++ C+ + K++V+G
Sbjct: 192 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 251
Query: 338 CVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDG 383
D V +W+ + + V+ GH D + + + ++ + S +L+
Sbjct: 252 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 297
Score = 108 bits (270), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 113/229 (49%), Gaps = 5/229 (2%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
LK TL G V V + P G + + S D + +W A + SGH ++ ++
Sbjct: 11 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 70
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
D + + SDD TL++W+ SG+ + ++GH + + C + S L +SGS D SV
Sbjct: 71 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 127
Query: 261 HMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHED 320
+ ++ TGK + +L +H+D + + F+R + S D IWD T +D
Sbjct: 128 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 187
Query: 321 G--VTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAI 367
V+ + + KY++ +D +++WD G C++T++GH++ I
Sbjct: 188 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 236
Score = 104 bits (260), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 136/300 (45%), Gaps = 12/300 (4%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
+GH+ V SV SP + +A+ D W G + I GHK +S +A+S D
Sbjct: 15 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 73
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
LL S D ++IWD SSG TL+G V +++P+ +++++GS D +V +W+
Sbjct: 74 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 133
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
L H V+ F DG I + S D R+W+ SG+ + + +
Sbjct: 134 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 191
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECI--GFSRS-SPWAATG 296
+ + S + L+ + D ++ + + + GK + + H + CI FS + W +G
Sbjct: 192 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 251
Query: 297 SMDQKLIIWDLQ-HSLPRSTCDHEDGVTCLMWLGTSKYVVTGCV--DGKVRVWDSLSGDC 353
S D + IW+LQ + + H D V T + + + D +++W S DC
Sbjct: 252 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS---DC 308
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 1/158 (0%)
Query: 235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAA 294
HT+ ++ + S + S S D + + GK ++ H I + +S S
Sbjct: 18 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 77
Query: 295 TGSMDQKLIIWDLQHSLPRSTCD-HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDC 353
+ S D+ L IWD+ T H + V C + S +V+G D VR+WD +G C
Sbjct: 78 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 137
Query: 354 VRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391
++T H D + A+ + +VS S DG R+++ A
Sbjct: 138 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 175
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 45/87 (51%)
Query: 308 QHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAI 367
++L + H V+ + + +++ + D +++W + G +T SGH+ I +
Sbjct: 8 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 67
Query: 368 SVSAHQDFLVSVSLDGTARVFEIADFK 394
+ S+ + LVS S D T ++++++ K
Sbjct: 68 AWSSDSNLLVSASDDKTLKIWDVSSGK 94
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 125 bits (313), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 146/285 (51%), Gaps = 8/285 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
+ GH +VSS+ FS +G+ LAS D L++IW G + T+ G G+ V+W +
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 79
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
++++ S+D T+ +W+ L GH + V C +F P I +GS D ++R+W+ K+
Sbjct: 80 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 139
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTD-SI 281
G+ + + P H++ ++ + + D +L +S S DG + + +G+ + +L+ + +
Sbjct: 140 GKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 196
Query: 282 ECIGFSRSSPWAATGSMDQKLIIWDLQH-SLPRSTCDHEDGVTCLMW---LGTSKYVVTG 337
+ FS + + ++D L +WD ++ H++ C+ + K++V+G
Sbjct: 197 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 256
Query: 338 CVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLD 382
D V +W+ + + V+ GH D + + + ++ + S +L+
Sbjct: 257 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 301
Score = 108 bits (269), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 113/229 (49%), Gaps = 5/229 (2%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
LK TL G V V + P G + + S D + +W A + SGH ++ ++
Sbjct: 16 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 75
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
D + + SDD TL++W+ SG+ + ++GH + + C + S L +SGS D SV
Sbjct: 76 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 132
Query: 261 HMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHED 320
+ ++ TGK + +L +H+D + + F+R + S D IWD T +D
Sbjct: 133 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 192
Query: 321 G--VTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAI 367
V+ + + KY++ +D +++WD G C++T++GH++ I
Sbjct: 193 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 241
Score = 104 bits (259), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 136/300 (45%), Gaps = 12/300 (4%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
+GH+ V SV SP + +A+ D W G + I GHK +S +A+S D
Sbjct: 20 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 78
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
LL S D ++IWD SSG TL+G V +++P+ +++++GS D +V +W+
Sbjct: 79 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 138
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
L H V+ F DG I + S D R+W+ SG+ + + +
Sbjct: 139 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 196
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECI--GFSRS-SPWAATG 296
+ + S + L+ + D ++ + + + GK + + H + CI FS + W +G
Sbjct: 197 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 256
Query: 297 SMDQKLIIWDLQ-HSLPRSTCDHEDGVTCLMWLGTSKYVVTGCV--DGKVRVWDSLSGDC 353
S D + IW+LQ + + H D V T + + + D +++W S DC
Sbjct: 257 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS---DC 313
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 1/158 (0%)
Query: 235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAA 294
HT+ ++ + S + S S D + + GK ++ H I + +S S
Sbjct: 23 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 82
Query: 295 TGSMDQKLIIWDLQHSLPRSTCD-HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDC 353
+ S D+ L IWD+ T H + V C + S +V+G D VR+WD +G C
Sbjct: 83 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 142
Query: 354 VRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391
++T H D + A+ + +VS S DG R+++ A
Sbjct: 143 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 180
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 48/99 (48%)
Query: 296 GSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVR 355
GS K ++L + H V+ + + +++ + D +++W + G +
Sbjct: 1 GSTQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 60
Query: 356 TFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADFK 394
T SGH+ I ++ S+ + LVS S D T ++++++ K
Sbjct: 61 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK 99
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 125 bits (313), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 146/285 (51%), Gaps = 8/285 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
+ GH +VSS+ FS +G+ LAS D L++IW G + T+ G G+ V+W +
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
++++ S+D T+ +W+ L GH + V C +F P I +GS D ++R+W+ K+
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTD-SI 281
G+ + + P H++ ++ + + D +L +S S DG + + +G+ + +L+ + +
Sbjct: 145 GKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 201
Query: 282 ECIGFSRSSPWAATGSMDQKLIIWDLQH-SLPRSTCDHEDGVTCLMW---LGTSKYVVTG 337
+ FS + + ++D L +WD ++ H++ C+ + K++V+G
Sbjct: 202 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 261
Query: 338 CVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLD 382
D V +W+ + + V+ GH D + + + ++ + S +L+
Sbjct: 262 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 306
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 113/229 (49%), Gaps = 5/229 (2%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
LK TL G V V + P G + + S D + +W A + SGH ++ ++
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 80
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
D + + SDD TL++W+ SG+ + ++GH + + C + S L +SGS D SV
Sbjct: 81 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 137
Query: 261 HMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHED 320
+ ++ TGK + +L +H+D + + F+R + S D IWD T +D
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 197
Query: 321 G--VTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAI 367
V+ + + KY++ +D +++WD G C++T++GH++ I
Sbjct: 198 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 246
Score = 104 bits (260), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 136/300 (45%), Gaps = 12/300 (4%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
+GH+ V SV SP + +A+ D W G + I GHK +S +A+S D
Sbjct: 25 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
LL S D ++IWD SSG TL+G V +++P+ +++++GS D +V +W+
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
L H V+ F DG I + S D R+W+ SG+ + + +
Sbjct: 144 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 201
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECI--GFSRS-SPWAATG 296
+ + S + L+ + D ++ + + + GK + + H + CI FS + W +G
Sbjct: 202 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 261
Query: 297 SMDQKLIIWDLQ-HSLPRSTCDHEDGVTCLMWLGTSKYVVTGCV--DGKVRVWDSLSGDC 353
S D + IW+LQ + + H D V T + + + D +++W S DC
Sbjct: 262 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS---DC 318
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 1/158 (0%)
Query: 235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAA 294
HT+ ++ + S + S S D + + GK ++ H I + +S S
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 87
Query: 295 TGSMDQKLIIWDLQHSLPRSTCD-HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDC 353
+ S D+ L IWD+ T H + V C + S +V+G D VR+WD +G C
Sbjct: 88 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 147
Query: 354 VRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391
++T H D + A+ + +VS S DG R+++ A
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 185
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 45/87 (51%)
Query: 308 QHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAI 367
++L + H V+ + + +++ + D +++W + G +T SGH+ I +
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 368 SVSAHQDFLVSVSLDGTARVFEIADFK 394
+ S+ + LVS S D T ++++++ K
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGK 104
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 125 bits (313), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 146/285 (51%), Gaps = 8/285 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
+ GH +VSS+ FS +G+ LAS D L++IW G + T+ G G+ V+W +
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 83
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
++++ S+D T+ +W+ L GH + V C +F P I +GS D ++R+W+ K+
Sbjct: 84 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 143
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTD-SI 281
G+ + + P H++ ++ + + D +L +S S DG + + +G+ + +L+ + +
Sbjct: 144 GKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 200
Query: 282 ECIGFSRSSPWAATGSMDQKLIIWDLQH-SLPRSTCDHEDGVTCLMW---LGTSKYVVTG 337
+ FS + + ++D L +WD ++ H++ C+ + K++V+G
Sbjct: 201 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 260
Query: 338 CVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLD 382
D V +W+ + + V+ GH D + + + ++ + S +L+
Sbjct: 261 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 305
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 113/229 (49%), Gaps = 5/229 (2%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
LK TL G V V + P G + + S D + +W A + SGH ++ ++
Sbjct: 20 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 79
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
D + + SDD TL++W+ SG+ + ++GH + + C + S L +SGS D SV
Sbjct: 80 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 136
Query: 261 HMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHED 320
+ ++ TGK + +L +H+D + + F+R + S D IWD T +D
Sbjct: 137 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 196
Query: 321 G--VTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAI 367
V+ + + KY++ +D +++WD G C++T++GH++ I
Sbjct: 197 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 245
Score = 104 bits (259), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 136/300 (45%), Gaps = 12/300 (4%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
+GH+ V SV SP + +A+ D W G + I GHK +S +A+S D
Sbjct: 24 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 82
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
LL S D ++IWD SSG TL+G V +++P+ +++++GS D +V +W+
Sbjct: 83 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 142
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
L H V+ F DG I + S D R+W+ SG+ + + +
Sbjct: 143 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 200
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECI--GFSRS-SPWAATG 296
+ + S + L+ + D ++ + + + GK + + H + CI FS + W +G
Sbjct: 201 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 260
Query: 297 SMDQKLIIWDLQ-HSLPRSTCDHEDGVTCLMWLGTSKYVVTGCV--DGKVRVWDSLSGDC 353
S D + IW+LQ + + H D V T + + + D +++W S DC
Sbjct: 261 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS---DC 317
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 1/158 (0%)
Query: 235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAA 294
HT+ ++ + S + S S D + + GK ++ H I + +S S
Sbjct: 27 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 86
Query: 295 TGSMDQKLIIWDLQHSLPRSTCD-HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDC 353
+ S D+ L IWD+ T H + V C + S +V+G D VR+WD +G C
Sbjct: 87 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 146
Query: 354 VRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391
++T H D + A+ + +VS S DG R+++ A
Sbjct: 147 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 184
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 45/87 (51%)
Query: 308 QHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAI 367
++L + H V+ + + +++ + D +++W + G +T SGH+ I +
Sbjct: 17 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 76
Query: 368 SVSAHQDFLVSVSLDGTARVFEIADFK 394
+ S+ + LVS S D T ++++++ K
Sbjct: 77 AWSSDSNLLVSASDDKTLKIWDVSSGK 103
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 125 bits (313), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 146/285 (51%), Gaps = 8/285 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
+ GH +VSS+ FS +G+ LAS D L++IW G + T+ G G+ V+W +
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 77
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
++++ S+D T+ +W+ L GH + V C +F P I +GS D ++R+W+ K+
Sbjct: 78 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 137
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTD-SI 281
G+ + + P H++ ++ + + D +L +S S DG + + +G+ + +L+ + +
Sbjct: 138 GKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 194
Query: 282 ECIGFSRSSPWAATGSMDQKLIIWDLQH-SLPRSTCDHEDGVTCLMW---LGTSKYVVTG 337
+ FS + + ++D L +WD ++ H++ C+ + K++V+G
Sbjct: 195 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 254
Query: 338 CVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLD 382
D V +W+ + + V+ GH D + + + ++ + S +L+
Sbjct: 255 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 299
Score = 108 bits (269), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 113/229 (49%), Gaps = 5/229 (2%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
LK TL G V V + P G + + S D + +W A + SGH ++ ++
Sbjct: 14 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 73
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
D + + SDD TL++W+ SG+ + ++GH + + C + S L +SGS D SV
Sbjct: 74 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 130
Query: 261 HMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHED 320
+ ++ TGK + +L +H+D + + F+R + S D IWD T +D
Sbjct: 131 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 190
Query: 321 G--VTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAI 367
V+ + + KY++ +D +++WD G C++T++GH++ I
Sbjct: 191 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 239
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 136/300 (45%), Gaps = 12/300 (4%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
+GH+ V SV SP + +A+ D W G + I GHK +S +A+S D
Sbjct: 18 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 76
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
LL S D ++IWD SSG TL+G V +++P+ +++++GS D +V +W+
Sbjct: 77 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 136
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
L H V+ F DG I + S D R+W+ SG+ + + +
Sbjct: 137 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 194
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECI--GFSRS-SPWAATG 296
+ + S + L+ + D ++ + + + GK + + H + CI FS + W +G
Sbjct: 195 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 254
Query: 297 SMDQKLIIWDLQ-HSLPRSTCDHEDGVTCLMWLGTSKYVVTGCV--DGKVRVWDSLSGDC 353
S D + IW+LQ + + H D V T + + + D +++W S DC
Sbjct: 255 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS---DC 311
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 1/158 (0%)
Query: 235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAA 294
HT+ ++ + S + S S D + + GK ++ H I + +S S
Sbjct: 21 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 80
Query: 295 TGSMDQKLIIWDLQHSLPRSTCD-HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDC 353
+ S D+ L IWD+ T H + V C + S +V+G D VR+WD +G C
Sbjct: 81 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 140
Query: 354 VRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391
++T H D + A+ + +VS S DG R+++ A
Sbjct: 141 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 178
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 45/87 (51%)
Query: 308 QHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAI 367
++L + H V+ + + +++ + D +++W + G +T SGH+ I +
Sbjct: 11 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 70
Query: 368 SVSAHQDFLVSVSLDGTARVFEIADFK 394
+ S+ + LVS S D T ++++++ K
Sbjct: 71 AWSSDSNLLVSASDDKTLKIWDVSSGK 97
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 125 bits (313), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 146/285 (51%), Gaps = 8/285 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
+ GH +VSS+ FS +G+ LAS D L++IW G + T+ G G+ V+W +
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
++++ S+D T+ +W+ L GH + V C +F P I +GS D ++R+W+ K+
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTD-SI 281
G+ + + P H++ ++ + + D +L +S S DG + + +G+ + +L+ + +
Sbjct: 145 GKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 201
Query: 282 ECIGFSRSSPWAATGSMDQKLIIWDLQH-SLPRSTCDHEDGVTCLMW---LGTSKYVVTG 337
+ FS + + ++D L +WD ++ H++ C+ + K++V+G
Sbjct: 202 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 261
Query: 338 CVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLD 382
D V +W+ + + V+ GH D + + + ++ + S +L+
Sbjct: 262 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 306
Score = 108 bits (269), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 113/229 (49%), Gaps = 5/229 (2%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
LK TL G V V + P G + + S D + +W A + SGH ++ ++
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 80
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
D + + SDD TL++W+ SG+ + ++GH + + C + S L +SGS D SV
Sbjct: 81 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 137
Query: 261 HMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHED 320
+ ++ TGK + +L +H+D + + F+R + S D IWD T +D
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 197
Query: 321 G--VTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAI 367
V+ + + KY++ +D +++WD G C++T++GH++ I
Sbjct: 198 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 246
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 136/300 (45%), Gaps = 12/300 (4%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
+GH+ V SV SP + +A+ D W G + I GHK +S +A+S D
Sbjct: 25 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
LL S D ++IWD SSG TL+G V +++P+ +++++GS D +V +W+
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
L H V+ F DG I + S D R+W+ SG+ + + +
Sbjct: 144 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 201
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECI--GFSRS-SPWAATG 296
+ + S + L+ + D ++ + + + GK + + H + CI FS + W +G
Sbjct: 202 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 261
Query: 297 SMDQKLIIWDLQ-HSLPRSTCDHEDGVTCLMWLGTSKYVVTGCV--DGKVRVWDSLSGDC 353
S D + IW+LQ + + H D V T + + + D +++W S DC
Sbjct: 262 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS---DC 318
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 1/158 (0%)
Query: 235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAA 294
HT+ ++ + S + S S D + + GK ++ H I + +S S
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 87
Query: 295 TGSMDQKLIIWDLQHSLPRSTCD-HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDC 353
+ S D+ L IWD+ T H + V C + S +V+G D VR+WD +G C
Sbjct: 88 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 147
Query: 354 VRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391
++T H D + A+ + +VS S DG R+++ A
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 185
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 45/87 (51%)
Query: 308 QHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAI 367
++L + H V+ + + +++ + D +++W + G +T SGH+ I +
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 368 SVSAHQDFLVSVSLDGTARVFEIADFK 394
+ S+ + LVS S D T ++++++ K
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGK 104
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 125 bits (313), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 144/308 (46%), Gaps = 19/308 (6%)
Query: 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
+ SGH V V P + +V+ D W GD+ ++GH DSV ++F
Sbjct: 102 YALSGHRSPVTRVIFHPVFSVMVS-ASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 160
Query: 118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177
G+LLAS D +++WD T+ G V VS P G +++ S D T+ MW
Sbjct: 161 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 220
Query: 178 ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE 237
+ F+GH V DG I + S+D T+RVW + E +R H + E
Sbjct: 221 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 280
Query: 238 GLTCLTISADSTLA-----------------LSGSKDGSVHMVNITTGKVVSSLVSHTDS 280
++ S+ S+++ LSGS+D ++ M +++TG + +LV H +
Sbjct: 281 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 340
Query: 281 IECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCD-HEDGVTCLMWLGTSKYVVTGCV 339
+ + F + + + D+ L +WD ++ T + HE VT L + T+ YVVTG V
Sbjct: 341 VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 400
Query: 340 DGKVRVWD 347
D V+VW+
Sbjct: 401 DQTVKVWE 408
Score = 91.3 bits (225), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 128/280 (45%), Gaps = 25/280 (8%)
Query: 134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSS 193
W P K L G V V +HP ++++ SED+T+ +W+ + + GH S
Sbjct: 94 WIPRPPE-KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDS 152
Query: 194 VTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALS 253
V F GK + + S D T+++W+ + E I + GH ++ ++ ++I + +S
Sbjct: 153 VQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHN---VSSVSIMPNGDHIVS 209
Query: 254 GSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPR 313
S+D ++ M + TG V + H + + + ++ A+ S DQ + +W + +
Sbjct: 210 ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK 269
Query: 314 STC-DHEDGVTCLMWLGTSKY--------------------VVTGCVDGKVRVWDSLSGD 352
+ +H V C+ W S Y +++G D +++WD +G
Sbjct: 270 AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 329
Query: 353 CVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIAD 392
C+ T GH + ++ + + F++S + D T RV++ +
Sbjct: 330 CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN 369
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%)
Query: 318 HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLV 377
H VT +++ +V+ D ++VWD +GD RT GH D++Q IS L
Sbjct: 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 166
Query: 378 SVSLDGTARVFEIADFK 394
S S D T ++++ F+
Sbjct: 167 SCSADMTIKLWDFQGFE 183
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 124 bits (311), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 147/285 (51%), Gaps = 8/285 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
+ GH +VSS+ FS +G+ LA+ D L++IW G + T+ G G+ V+W +
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
++++ S+D T+ +W+ L GH + V C +F P I +GS D ++R+W+ K+
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTD-SI 281
G+ + + P H++ ++ + + D +L +S S DG + + +G+ + +L+ + +
Sbjct: 142 GKCLKTL---PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Query: 282 ECIGFSRSSPWAATGSMDQKLIIWDL-QHSLPRSTCDHEDGVTCLMW---LGTSKYVVTG 337
+ FS + + ++D L +WD + ++ H++ C+ + K++V+G
Sbjct: 199 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 258
Query: 338 CVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLD 382
D V +W+ + + V+ GH D + + + ++ + S +L+
Sbjct: 259 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 303
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 113/229 (49%), Gaps = 5/229 (2%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
LK TL G V V + P G + A S D + +W A + SGH ++ ++
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
D + + SDD TL++W+ SG+ + ++GH + + C + S L +SGS D SV
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 134
Query: 261 HMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHED 320
+ ++ TGK + +L +H+D + + F+R + S D IWD T +D
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 194
Query: 321 G--VTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAI 367
V+ + + KY++ +D +++WD G C++T++GH++ I
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/300 (26%), Positives = 135/300 (45%), Gaps = 12/300 (4%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
+GH+ V SV SP L A+ D W G + I GHK +S +A+S D
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSA-DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
LL S D ++IWD SSG TL+G V +++P+ +++++GS D +V +W+
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
L H V+ F DG I + S D R+W+ SG+ + + +
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 198
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECI--GFSRS-SPWAATG 296
+ + S + L+ + D ++ + + + GK + + H + CI FS + W +G
Sbjct: 199 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 258
Query: 297 SMDQKLIIWDLQ-HSLPRSTCDHEDGVTCLMWLGTSKYVVTGCV--DGKVRVWDSLSGDC 353
S D + IW+LQ + + H D V T + + + D +++W S DC
Sbjct: 259 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS---DC 315
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 1/158 (0%)
Query: 235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAA 294
HT+ ++ + S + + S D + + GK ++ H I + +S S
Sbjct: 25 HTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 295 TGSMDQKLIIWDLQHSLPRSTCD-HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDC 353
+ S D+ L IWD+ T H + V C + S +V+G D VR+WD +G C
Sbjct: 85 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 144
Query: 354 VRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391
++T H D + A+ + +VS S DG R+++ A
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 44/87 (50%)
Query: 308 QHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAI 367
++L + H V+ + + +++ D +++W + G +T SGH+ I +
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 368 SVSAHQDFLVSVSLDGTARVFEIADFK 394
+ S+ + LVS S D T ++++++ K
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGK 101
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 124 bits (311), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 145/286 (50%), Gaps = 8/286 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
+ GH +VSS+ FS +G+ LAS D L++IW G + T+ G G+ V+W +
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
++++ S+D T+ +W+ L GH + V C +F P I +GS D ++R+W+ K+
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTD-SI 281
G ++ P H++ ++ + + D +L +S S DG + + +G+ + +L+ + +
Sbjct: 142 G---MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Query: 282 ECIGFSRSSPWAATGSMDQKLIIWDLQH-SLPRSTCDHEDGVTCLMW---LGTSKYVVTG 337
+ FS + + ++D L +WD ++ H++ C+ + K++V+G
Sbjct: 199 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 258
Query: 338 CVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDG 383
D V +W+ + + V+ GH D + + + ++ + S +L+
Sbjct: 259 SEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 304
Score = 105 bits (261), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 136/300 (45%), Gaps = 12/300 (4%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
+GH+ V SV SP + +A+ D W G + I GHK +S +A+S D
Sbjct: 22 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
LL S D ++IWD SSG TL+G V +++P+ +++++GS D +V +W+
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
L H V+ F DG I + S D R+W+ SG+ + + +
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 198
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECI--GFSRS-SPWAATG 296
+ + S + L+ + D ++ + + + GK + + H + CI FS + W +G
Sbjct: 199 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 258
Query: 297 SMDQKLIIWDLQ-HSLPRSTCDHEDGVTCLMWLGTSKYVVTGCV--DGKVRVWDSLSGDC 353
S D + IW+LQ + + H D V T + + + D +++W S DC
Sbjct: 259 SEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS---DC 315
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 111/229 (48%), Gaps = 5/229 (2%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
L TL G V V + P G + + S D + +W A + SGH ++ ++
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
D + + SDD TL++W+ SG+ + ++GH + + C + S L +SGS D SV
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 134
Query: 261 HMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHED 320
+ ++ TG + +L +H+D + + F+R + S D IWD T +D
Sbjct: 135 RIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 194
Query: 321 G--VTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAI 367
V+ + + KY++ +D +++WD G C++T++GH++ I
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 115/219 (52%), Gaps = 7/219 (3%)
Query: 180 RAAYLNMFS--GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE 237
+ Y MF+ GH +V+ F+P+G+ + + S D +++W G+ I GH
Sbjct: 13 KPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL--- 69
Query: 238 GLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGS 297
G++ + S+DS L +S S D ++ + ++++GK + +L H++ + C F+ S +GS
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Query: 298 MDQKLIIWDLQHSLPRSTCD-HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRT 356
D+ + IWD++ + T H D V+ + + +V+ DG R+WD+ SG C++T
Sbjct: 130 FDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 357 F-SGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADFK 394
+ + S + ++++ +LD T ++++ + K
Sbjct: 190 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 228
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 145/286 (50%), Gaps = 8/286 (2%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
+ GH +VSS+ FS +G+ LAS D L++IW G + T+ G G+ V+W +
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222
++++ S+D T+ +W+ L GH + V C +F P I +GS D ++R+W+ K+
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTD-SI 281
G ++ P H++ ++ + + D +L +S S DG + + +G+ + +L+ + +
Sbjct: 142 G---MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Query: 282 ECIGFSRSSPWAATGSMDQKLIIWDLQH-SLPRSTCDHEDGVTCLMW---LGTSKYVVTG 337
+ FS + + ++D L +WD ++ H++ C+ + K++V+G
Sbjct: 199 SFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 258
Query: 338 CVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDG 383
D V +W+ + + V+ GH D + + + ++ + S +L+
Sbjct: 259 SEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 304
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 135/300 (45%), Gaps = 12/300 (4%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
+GH+ V SV SP + +A+ D W G + I GHK +S +A+S D
Sbjct: 22 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
LL S D ++IWD SSG TL+G V +++P+ +++++GS D +V +W+
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
L H V+ F DG I + S D R+W+ SG+ + + +
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--DNPPV 198
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECI--GFSRS-SPWAATG 296
+ + S + L+ + D + + + + GK + + H + CI FS + W +G
Sbjct: 199 SFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 258
Query: 297 SMDQKLIIWDLQ-HSLPRSTCDHEDGVTCLMWLGTSKYVVTGCV--DGKVRVWDSLSGDC 353
S D + IW+LQ + + H D V T + + + D +++W S DC
Sbjct: 259 SEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS---DC 315
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 111/229 (48%), Gaps = 5/229 (2%)
Query: 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200
L TL G V V + P G + + S D + +W A + SGH ++ ++
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
D + + SDD TL++W+ SG+ + ++GH + + C + S L +SGS D SV
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY---VFCCNFNPQSNLIVSGSFDESV 134
Query: 261 HMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHED 320
+ ++ TG + +L +H+D + + F+R + S D IWD T +D
Sbjct: 135 RIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 194
Query: 321 G--VTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAI 367
V+ + + KY++ +D +++WD G C++T++GH++ I
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCI 243
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 114/219 (52%), Gaps = 7/219 (3%)
Query: 180 RAAYLNMFS--GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE 237
+ Y MF+ GH +V+ F+P+G+ + + S D +++W G+ I GH
Sbjct: 13 KPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL--- 69
Query: 238 GLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGS 297
G++ + S+DS L +S S D ++ + ++++GK + +L H++ + C F+ S +GS
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Query: 298 MDQKLIIWDLQHSLPRSTCD-HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRT 356
D+ + IWD++ + T H D V+ + + +V+ DG R+WD+ SG C++T
Sbjct: 130 FDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 357 F-SGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADFK 394
+ + S + ++++ +LD ++++ + K
Sbjct: 190 LIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGK 228
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 88/304 (28%), Positives = 154/304 (50%), Gaps = 20/304 (6%)
Query: 92 WRINQGDWASEIQGHKDSV-SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGG 150
WR + ++GH D V + L F G + SG D +++W +G TL G G
Sbjct: 103 WRRGELKSPKVLKGHDDHVITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG 160
Query: 151 GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS 210
GV W S R +I+++GS D T+ +WNA+ ++ GH S+V C K + +GS
Sbjct: 161 GV-WSS-QMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVVSGS 216
Query: 211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV 270
DATLRVW+ ++G+ +HV+ G H + C + D +SG+ D V + + T
Sbjct: 217 RDATLRVWDIETGQCLHVLMG---HVAAVRC--VQYDGRRVVSGAYDFMVKVWDPETETC 271
Query: 271 VSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGT 330
+ +L HT+ + + F +GS+D + +WD++ T +T M L
Sbjct: 272 LHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL-K 328
Query: 331 SKYVVTGCVDGKVRVWDSLSGDCVRTFSG---HRDAIQAISVSAHQDFLVSVSLDGTARV 387
+V+G D V++WD +G C++T G H+ A+ + + ++F+++ S DGT ++
Sbjct: 329 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKL 386
Query: 388 FEIA 391
+++
Sbjct: 387 WDLK 390
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/306 (25%), Positives = 138/306 (45%), Gaps = 21/306 (6%)
Query: 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAF 115
S + GH D V + C + +G D+ W G + GH V S
Sbjct: 110 SPKVLKGHDDHV--ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS--S 165
Query: 116 SMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWM 175
M ++ SG D +++W+ +G TL G V + H + V++GS D+T+ +
Sbjct: 166 QMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRV 223
Query: 176 WNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYH 235
W+ + L++ GH ++V C + DG+ + +G+ D ++VW+P++ +H ++GH
Sbjct: 224 WDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR 281
Query: 236 TEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAAT 295
L D +SGS D S+ + ++ TG + +L H G +
Sbjct: 282 VYSL-----QFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS--GMELKDNILVS 334
Query: 296 GSMDQKLIIWDLQHSLPRSTCD----HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSG 351
G+ D + IWD++ T H+ VTCL + +V+T DG V++WD +G
Sbjct: 335 GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTG 392
Query: 352 DCVRTF 357
+ +R
Sbjct: 393 EFIRNL 398
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 112/222 (50%), Gaps = 11/222 (4%)
Query: 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLA 114
+ H GH+ +V C V +G D W I G + GH +V +
Sbjct: 190 ECIHTLYGHTS---TVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQ 246
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
+ DG+ + SG D +V++WDP + TL+G V S G V++GS D+++
Sbjct: 247 Y--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV--YSLQFDGIHVVSGSLDTSIR 302
Query: 175 MWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPY 234
+W+ + ++ +GH S+T G D + +G+ D+T+++W+ K+G+ + ++G
Sbjct: 303 VWDVETGNCIHTLTGH-QSLTSGMELKDN-ILVSGNADSTVKIWDIKTGQCLQTLQGPNK 360
Query: 235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS 276
H +TCL + + ++ S DG+V + ++ TG+ + +LV+
Sbjct: 361 HQSAVTCLQFNKN--FVITSSDDGTVKLWDLKTGEFIRNLVT 400
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 108 bits (269), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 85/312 (27%), Positives = 140/312 (44%), Gaps = 28/312 (8%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
++GH SV + + + +G D +++++D + L G GGV W + G
Sbjct: 117 LRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGV-WALKYAHGG 174
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT--PDGKTICTGSDDATLRVWN- 219
I+++GS D TV +W+ + ++F GH S+V C D + K I TGS D TL VW
Sbjct: 175 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
Query: 220 ------PKSGEN------IHVIRGHPYHTEGL-----TCLTISADSTLALSGSKDGSVHM 262
P GE H +PY L + T+S + +SGS D ++ +
Sbjct: 235 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 294
Query: 263 VNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGV 322
++ K + L HTD I + + SMD + IWDL++ T +
Sbjct: 295 WDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL 354
Query: 323 TCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLD 382
L+ L + K++V+ DG +R WD + D R FS H + AI+ D ++ +
Sbjct: 355 VGLLRL-SDKFLVSAAADGSIRGWD--ANDYSRKFSYHHTNLSAITTFYVSD---NILVS 408
Query: 383 GTARVFEIADFK 394
G+ F I + +
Sbjct: 409 GSENQFNIYNLR 420
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 62/297 (20%), Positives = 111/297 (37%), Gaps = 65/297 (21%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAF--SM 117
SGH V+ A ++ +G D W I +G +GH +V L
Sbjct: 158 LSGHDGGVW--ALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK 215
Query: 118 DGQLLASGGLDGLVQIWD-------PSSGN----------------LKCTLEGPGGGVEW 154
+ + + +G D + +W P G L G V
Sbjct: 216 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT 275
Query: 155 VSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT 214
VS H G+IV++GS D+T+ +W+ + L + SGH + + + K + S D T
Sbjct: 276 VSGH--GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT 333
Query: 215 LRVWNPKSGENIHVIRGH-----------------------------------PYHTEGL 239
+R+W+ ++GE ++ ++GH YH L
Sbjct: 334 IRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNL 393
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVV-SSLVSHTDSIECIGFSRSSPWAAT 295
+ +T S L + ++ N+ +GK+V ++++ D I + F + AA
Sbjct: 394 SAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAV 450
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 78/170 (45%), Gaps = 9/170 (5%)
Query: 59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD 118
+ GH V +V+ +V +G D+ W + Q + GH D + S + +
Sbjct: 265 VLRGHMASVRTVSGH---GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHE 321
Query: 119 GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178
+ S +D ++IWD +G L TL+G V + + +++ + D ++ W+A
Sbjct: 322 RKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDK--FLVSAAADGSIRGWDA 379
Query: 179 DRAAYLNMFSGHGSSVTC-GDFTPDGKTICTGSDDATLRVWNPKSGENIH 227
+ Y FS H ++++ F + +GS++ ++N +SG+ +H
Sbjct: 380 N--DYSRKFSYHHTNLSAITTFYVSDNILVSGSENQ-FNIYNLRSGKLVH 426
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 4/113 (3%)
Query: 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
+I SGH+D +YS ++ D W + G+ +QGH V L S
Sbjct: 304 YILSGHTDRIYSTIYDHERKRCIS-ASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS- 361
Query: 118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED 170
+ L S DG ++ WD + + K + +++ +I+++GSE+
Sbjct: 362 -DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSA-ITTFYVSDNILVSGSEN 412
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 104 bits (259), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 84/312 (26%), Positives = 138/312 (44%), Gaps = 28/312 (8%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
++GH SV + + + +G D ++++D + L G GGV W + G
Sbjct: 117 LRGHXTSVIT-CLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGV-WALKYAHGG 174
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT--PDGKTICTGSDDATLRVWN- 219
I+++GS D TV +W+ + ++F GH S+V C D + K I TGS D TL VW
Sbjct: 175 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
Query: 220 ------PKSGEN------IHVIRGHPYHTEGL-----TCLTISADSTLALSGSKDGSVHM 262
P GE H +PY L + T+S + +SGS D ++ +
Sbjct: 235 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIV 294
Query: 263 VNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGV 322
++ K + L HTD I + + S D + IWDL++ T +
Sbjct: 295 WDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTAL 354
Query: 323 TCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLD 382
L+ L + K++V+ DG +R WD + D R FS H + AI+ D ++ +
Sbjct: 355 VGLLRL-SDKFLVSAAADGSIRGWD--ANDYSRKFSYHHTNLSAITTFYVSD---NILVS 408
Query: 383 GTARVFEIADFK 394
G+ F I + +
Sbjct: 409 GSENQFNIYNLR 420
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 63/305 (20%), Positives = 112/305 (36%), Gaps = 65/305 (21%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAF--SM 117
SGH V+ A ++ +G D W I +G +GH +V L
Sbjct: 158 LSGHDGGVW--ALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK 215
Query: 118 DGQLLASGGLDGLVQIWD-------PSSGN----------------LKCTLEGPGGGVEW 154
+ + + +G D + +W P G L G V
Sbjct: 216 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRT 275
Query: 155 VSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT 214
VS H G+IV++GS D+T+ +W+ + L + SGH + + + K + S D T
Sbjct: 276 VSGH--GNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTT 333
Query: 215 LRVWNPKSGENIHVIRGH-----------------------------------PYHTEGL 239
+R+W+ ++GE + ++GH YH L
Sbjct: 334 IRIWDLENGELXYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNL 393
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVV-SSLVSHTDSIECIGFSRSSPWAATGSM 298
+ +T S L + ++ N+ +GK+V ++++ D I + F + AA
Sbjct: 394 SAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKD 453
Query: 299 DQKLI 303
Q +
Sbjct: 454 GQSFL 458
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 77/170 (45%), Gaps = 9/170 (5%)
Query: 59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD 118
+ GH V +V+ +V +G D+ W + Q + GH D + S + +
Sbjct: 265 VLRGHXASVRTVSGH---GNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHE 321
Query: 119 GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178
+ S D ++IWD +G L TL+G V + + +++ + D ++ W+A
Sbjct: 322 RKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDK--FLVSAAADGSIRGWDA 379
Query: 179 DRAAYLNMFSGHGSSVTC-GDFTPDGKTICTGSDDATLRVWNPKSGENIH 227
+ Y FS H ++++ F + +GS++ ++N +SG+ +H
Sbjct: 380 N--DYSRKFSYHHTNLSAITTFYVSDNILVSGSENQ-FNIYNLRSGKLVH 426
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 4/113 (3%)
Query: 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM 117
+I SGH+D +YS ++ D W + G+ +QGH V L S
Sbjct: 304 YILSGHTDRIYSTIYDHERKRCIS-ASXDTTIRIWDLENGELXYTLQGHTALVGLLRLS- 361
Query: 118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED 170
+ L S DG ++ WD + + K + +++ +I+++GSE+
Sbjct: 362 -DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSA-ITTFYVSDNILVSGSEN 412
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 100 bits (250), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 75/304 (24%), Positives = 140/304 (46%), Gaps = 44/304 (14%)
Query: 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG-------------- 151
H V + FS DG+ LA+G + Q++ S G+L L
Sbjct: 63 HTSVVCCVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 121
Query: 152 ----VEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC 207
+ V + P G + G+ED + +W+ + + + GH + D+ P G +
Sbjct: 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV 181
Query: 208 TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNIT 266
+GS D T+R+W+ ++G+ + +G+T + +S D +GS D +V + +
Sbjct: 182 SGSGDRTVRIWDLRTGQCSLTLSIE----DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE 237
Query: 267 TGKVVSSLVS-------HTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRS----- 314
TG +V L S H DS+ + F+R +GS+D+ + +W+LQ++ +S
Sbjct: 238 TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 297
Query: 315 ---TCD-----HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQA 366
TC+ H+D V + +Y+++G D V WD SG+ + GHR+++ +
Sbjct: 298 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS 357
Query: 367 ISVS 370
++V+
Sbjct: 358 VAVA 361
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 119/286 (41%), Gaps = 24/286 (8%)
Query: 50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDS 109
+ P++ S SD C D +ATG D W I +QGH+
Sbjct: 108 NKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQD 167
Query: 110 VSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP-RGHIVLAGS 168
+ SL + G L SG D V+IWD +G TL GV V+ P G + AGS
Sbjct: 168 IYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL-SIEDGVTTVAVSPGDGKYIAAGS 226
Query: 169 EDSTVWMWNADRAAYLNMF-------SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPK 221
D V +W+++ + +GH SV FT DG+++ +GS D ++++WN +
Sbjct: 227 LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ 286
Query: 222 SGENIHVIR---------GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVS 272
+ N + + H + + + + + LSGSKD V + +G +
Sbjct: 287 NANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL 346
Query: 273 SLVSHTDSIECIGFSRSSPWA------ATGSMDQKLIIWDLQHSLP 312
L H +S+ + + S ATGS D K IW + P
Sbjct: 347 MLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKIAP 392
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 102/226 (45%), Gaps = 24/226 (10%)
Query: 190 HGSSVTCGDFTPDGKTICTGSDDAT--LRVWN-------------PKSGENIHVIRGHPY 234
H S V C F+ DG+ + TG + T RV + K EN++ P
Sbjct: 63 HTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNT-SSSPS 121
Query: 235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAA 294
+ + S D +G++D + + +I K+V L H I + + S
Sbjct: 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV 181
Query: 295 TGSMDQKLIIWDLQHSLPRSTCDHEDGVTCL-MWLGTSKYVVTGCVDGKVRVWDSLSGDC 353
+GS D+ + IWDL+ T EDGVT + + G KY+ G +D VRVWDS +G
Sbjct: 182 SGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL 241
Query: 354 VRTF-------SGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIAD 392
V +GH+D++ ++ + +VS SLD + +++ + +
Sbjct: 242 VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 287
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 100/423 (23%), Positives = 165/423 (39%), Gaps = 95/423 (22%)
Query: 57 THIFSGHSDEVYSVACSPTDAT---LVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSL 113
H + HS++V C T+ + L+ATG D W +NQ + + + GH +SV+
Sbjct: 699 VHTYDEHSEQVN--CCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC 756
Query: 114 AFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL---------EGPGGGVE----------- 153
FS D +LLAS DG +++WD S N + ++ E P VE
Sbjct: 757 RFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSAD 816
Query: 154 -----------------------------------WVSWHPRGHIVLAGSEDSTVWMWNA 178
+ + P H+ + V +WN
Sbjct: 817 GDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNI 876
Query: 179 DRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS---------GENIHV- 228
D + GH S V F+PDG + T SDD T+RVW K + I V
Sbjct: 877 DSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVV 936
Query: 229 -------------IRGHP----------YHTEG-LTCLTISADSTLALSGSKDGSVHMVN 264
IRG Y E ++C +S G +DG++ ++
Sbjct: 937 FQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIE 996
Query: 265 ITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTC 324
+ +V SS V H ++ I F+ + S D + +W+ Q H++ V
Sbjct: 997 LPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKD 1056
Query: 325 LMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGT 384
L S+ +++ DG V+VW+ ++G R F+ H+ + + ++S+ S S D T
Sbjct: 1057 FRLLQDSR-LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKT 1115
Query: 385 ARV 387
A++
Sbjct: 1116 AKI 1118
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/306 (26%), Positives = 137/306 (44%), Gaps = 14/306 (4%)
Query: 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAF 115
S + H+D VY AC D +A+ G D ++ G+ +I+ H+D V AF
Sbjct: 614 SRLVVRPHTDAVYH-ACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAF 672
Query: 116 SMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSW-HPRGHIVLA-GSEDSTV 173
S D +A+ D V+IWD ++G L T + V + + H++LA GS D +
Sbjct: 673 SSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL 732
Query: 174 WMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG---ENIHVIR 230
+W+ ++ N GH +SV F+PD + + + S D TLR+W+ +S ++I+V R
Sbjct: 733 KLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKR 792
Query: 231 GH------PYHTEGLT-CLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIEC 283
P E + C + SAD + +K+ + T+G + H +I+
Sbjct: 793 FFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQY 852
Query: 284 IGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCD-HEDGVTCLMWLGTSKYVVTGCVDGK 342
FS A + +W++ L + C H V +M+ +T D
Sbjct: 853 CDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQT 912
Query: 343 VRVWDS 348
+RVW++
Sbjct: 913 IRVWET 918
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 4/175 (2%)
Query: 219 NPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHT 278
N K+ +N+ + P HT+ + S D S D ++ + TG+ + + +H
Sbjct: 606 NKKTIKNLSRLVVRP-HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHE 664
Query: 279 DSIECIGFSRSSPWAATGSMDQKLIIWD-LQHSLPRSTCDHEDGVTCLMWLGTSKYVV-- 335
D + C FS + AT S D+K+ IWD L + +H + V C + S +++
Sbjct: 665 DEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLA 724
Query: 336 TGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEI 390
TG D +++WD +C T GH +++ S + L S S DGT R++++
Sbjct: 725 TGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 779
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 113/267 (42%), Gaps = 18/267 (6%)
Query: 51 EQPDDSTHIFS---GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHK 107
E P++ +FS GH V + + TL+++ D W GD+ +Q H+
Sbjct: 996 ELPNN--RVFSSGVGHKKAVRHIQFTADGKTLISSSE-DSVIQVWNWQTGDYVF-LQAHQ 1051
Query: 108 DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAG 167
++V D +LL S DG V++W+ +G ++ G V + +
Sbjct: 1052 ETVKDFRLLQDSRLL-SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSST 1110
Query: 168 SEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIH 227
S D T +W+ D + L+ GH V C F+ DG + TG D+ +R+WN G+ +H
Sbjct: 1111 SADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLH 1170
Query: 228 ------VIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSI 281
V G H +T + S DS +S G + N+ TG SS +T+
Sbjct: 1171 SCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGD--SSQTFYTNGT 1226
Query: 282 ECIGFSRSSPWAATGSMDQKLIIWDLQ 308
S + ++D I++ LQ
Sbjct: 1227 NLKKIHVSPDFRTYVTVDNLGILYILQ 1253
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 74/306 (24%), Positives = 129/306 (42%), Gaps = 24/306 (7%)
Query: 93 RINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGV 152
+ Q D+ E Q VS S + +A G DG ++I + + + + G V
Sbjct: 959 KTGQIDYLPEAQ-----VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAV 1013
Query: 153 EWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD 212
+ + G +++ SEDS + +WN Y+ H +V D + + + S D
Sbjct: 1014 RHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDSRLL-SWSFD 1071
Query: 213 ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVS 272
T++VWN +G + R H + IS+D+T S S D + + + +
Sbjct: 1072 GTVKVWNVITGR---IERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLH 1128
Query: 273 SLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWD-----LQH-----SLPRSTCDHEDGV 322
L H + C FS ATG + ++ IW+ L H S+ T H V
Sbjct: 1129 ELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWV 1188
Query: 323 TCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLD 382
T + + SK +V+ G ++ W+ +GD +TF + ++ I VS DF V++D
Sbjct: 1189 TDVCFSPDSKTLVSA--GGYLKWWNVATGDSSQTFYTNGTNLKKIHVSP--DFRTYVTVD 1244
Query: 383 GTARVF 388
++
Sbjct: 1245 NLGILY 1250
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Query: 263 VNITTGKVVSSLV--SHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCD-HE 319
+N T K +S LV HTD++ FS+ A+ D+ L ++ + HE
Sbjct: 605 INKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHE 664
Query: 320 DGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLV 377
D V C + Y+ T D KV++WDS +G V T+ H + + + + L+
Sbjct: 665 DEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLL 722
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 100/423 (23%), Positives = 165/423 (39%), Gaps = 95/423 (22%)
Query: 57 THIFSGHSDEVYSVACSPTDAT---LVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSL 113
H + HS++V C T+ + L+ATG D W +NQ + + + GH +SV+
Sbjct: 692 VHTYDEHSEQVN--CCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC 749
Query: 114 AFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL---------EGPGGGVE----------- 153
FS D +LLAS DG +++WD S N + ++ E P VE
Sbjct: 750 RFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSAD 809
Query: 154 -----------------------------------WVSWHPRGHIVLAGSEDSTVWMWNA 178
+ + P H+ + V +WN
Sbjct: 810 GDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNI 869
Query: 179 DRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS---------GENIHV- 228
D + GH S V F+PDG + T SDD T+RVW K + I V
Sbjct: 870 DSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVV 929
Query: 229 -------------IRGHP----------YHTEG-LTCLTISADSTLALSGSKDGSVHMVN 264
IRG Y E ++C +S G +DG++ ++
Sbjct: 930 FQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIE 989
Query: 265 ITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTC 324
+ +V SS V H ++ I F+ + S D + +W+ Q H++ V
Sbjct: 990 LPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKD 1049
Query: 325 LMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGT 384
L S+ +++ DG V+VW+ ++G R F+ H+ + + ++S+ S S D T
Sbjct: 1050 FRLLQDSR-LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKT 1108
Query: 385 ARV 387
A++
Sbjct: 1109 AKI 1111
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/306 (26%), Positives = 137/306 (44%), Gaps = 14/306 (4%)
Query: 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAF 115
S + H+D VY AC D +A+ G D ++ G+ +I+ H+D V AF
Sbjct: 607 SRLVVRPHTDAVYH-ACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAF 665
Query: 116 SMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSW-HPRGHIVLA-GSEDSTV 173
S D +A+ D V+IWD ++G L T + V + + H++LA GS D +
Sbjct: 666 SSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL 725
Query: 174 WMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG---ENIHVIR 230
+W+ ++ N GH +SV F+PD + + + S D TLR+W+ +S ++I+V R
Sbjct: 726 KLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKR 785
Query: 231 GH------PYHTEGLT-CLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIEC 283
P E + C + SAD + +K+ + T+G + H +I+
Sbjct: 786 FFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQY 845
Query: 284 IGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCD-HEDGVTCLMWLGTSKYVVTGCVDGK 342
FS A + +W++ L + C H V +M+ +T D
Sbjct: 846 CDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQT 905
Query: 343 VRVWDS 348
+RVW++
Sbjct: 906 IRVWET 911
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 4/175 (2%)
Query: 219 NPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHT 278
N K+ +N+ + P HT+ + S D S D ++ + TG+ + + +H
Sbjct: 599 NKKTIKNLSRLVVRP-HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHE 657
Query: 279 DSIECIGFSRSSPWAATGSMDQKLIIWD-LQHSLPRSTCDHEDGVTCLMWLGTSKYVV-- 335
D + C FS + AT S D+K+ IWD L + +H + V C + S +++
Sbjct: 658 DEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLA 717
Query: 336 TGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEI 390
TG D +++WD +C T GH +++ S + L S S DGT R++++
Sbjct: 718 TGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 772
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 98/227 (43%), Gaps = 16/227 (7%)
Query: 51 EQPDDSTHIFS---GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHK 107
E P++ +FS GH V + + TL+++ D W GD+ +Q H+
Sbjct: 989 ELPNN--RVFSSGVGHKKAVRHIQFTADGKTLISSSE-DSVIQVWNWQTGDYVF-LQAHQ 1044
Query: 108 DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAG 167
++V D +LL S DG V++W+ +G ++ G V + +
Sbjct: 1045 ETVKDFRLLQDSRLL-SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSST 1103
Query: 168 SEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIH 227
S D T +W+ D + L+ GH V C F+ DG + TG D+ +R+WN G+ +H
Sbjct: 1104 SADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLH 1163
Query: 228 ------VIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG 268
V G H +T + S DS +S G + N+ TG
Sbjct: 1164 SCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATG 1208
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 74/306 (24%), Positives = 129/306 (42%), Gaps = 24/306 (7%)
Query: 93 RINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGV 152
+ Q D+ E Q VS S + +A G DG ++I + + + + G V
Sbjct: 952 KTGQIDYLPEAQ-----VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAV 1006
Query: 153 EWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD 212
+ + G +++ SEDS + +WN Y+ H +V D + + + S D
Sbjct: 1007 RHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDSRLL-SWSFD 1064
Query: 213 ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVS 272
T++VWN +G + R H + IS+D+T S S D + + + +
Sbjct: 1065 GTVKVWNVITGR---IERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLH 1121
Query: 273 SLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWD-----LQH-----SLPRSTCDHEDGV 322
L H + C FS ATG + ++ IW+ L H S+ T H V
Sbjct: 1122 ELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWV 1181
Query: 323 TCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLD 382
T + + SK +V+ G ++ W+ +GD +TF + ++ I VS DF V++D
Sbjct: 1182 TDVCFSPDSKTLVSA--GGYLKWWNVATGDSSQTFYTNGTNLKKIHVSP--DFRTYVTVD 1237
Query: 383 GTARVF 388
++
Sbjct: 1238 NLGILY 1243
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Query: 263 VNITTGKVVSSLV--SHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCD-HE 319
+N T K +S LV HTD++ FS+ A+ D+ L ++ + HE
Sbjct: 598 INKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHE 657
Query: 320 DGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLV 377
D V C + Y+ T D KV++WDS +G V T+ H + + + + L+
Sbjct: 658 DEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLL 715
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 98.2 bits (243), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 93/423 (21%), Positives = 166/423 (39%), Gaps = 95/423 (22%)
Query: 57 THIFSGHSDEVYSVACSPTDAT---LVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSL 113
H + HS++V C T+++ L+ATG D W +NQ + + + GH +SV+
Sbjct: 698 VHTYDEHSEQVN--CCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHC 755
Query: 114 AFSMDGQLLASGGLDGLVQIWDPSSGNLK---------CTLEGPG--------------- 149
FS D +LLAS DG +++WD +S N + LE P
Sbjct: 756 RFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSAD 815
Query: 150 -------------------------------GGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178
+++ + P+ H+ + V +WN
Sbjct: 816 GARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNT 875
Query: 179 DRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS---------------- 222
D + + GH S V F+PDG + T SDD T+R+W K
Sbjct: 876 DSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVV 935
Query: 223 -GEN------------IHVIRGHP----YHTEG-LTCLTISADSTLALSGSKDGSVHMVN 264
EN + +I G Y TE ++C +S G ++G++ ++
Sbjct: 936 FQENEVMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILE 995
Query: 265 ITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTC 324
+ ++ S H ++ I F+ + S D ++ +W+ Q H++ V
Sbjct: 996 LVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIFLRGHQETVKD 1055
Query: 325 LMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGT 384
L S+ +++ DG V+VW+ ++G+ + F H+ + + +S S S D T
Sbjct: 1056 FRLLKNSR-LLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKT 1114
Query: 385 ARV 387
A++
Sbjct: 1115 AKI 1117
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 74/307 (24%), Positives = 133/307 (43%), Gaps = 16/307 (5%)
Query: 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAF 115
S + H+D VY AC D +A+ G D ++ G+ EI+ H+D V AF
Sbjct: 613 SRLVVRPHTDAVYH-ACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAF 671
Query: 116 SMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSW-HPRGHIVLA-GSEDSTV 173
S D + +A+ +D V+IW+ +G L T + V + + H++LA GS D +
Sbjct: 672 STDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFL 731
Query: 174 WMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHP 233
+W+ ++ N GH +SV F+PD K + + S D TL++W+ S I
Sbjct: 732 KLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQ 791
Query: 234 YHTEG----------LTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL-VSHTDSIE 282
+ + C + SAD + +K+ + + +I T ++ + H +I+
Sbjct: 792 FFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKN-KIFLFDIHTSGLLGEIHTGHHSTIQ 850
Query: 283 CIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCD-HEDGVTCLMWLGTSKYVVTGCVDG 341
FS + A + +W+ + C H V +M+ +T D
Sbjct: 851 YCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQ 910
Query: 342 KVRVWDS 348
+R+W++
Sbjct: 911 TIRLWET 917
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 83/174 (47%), Gaps = 4/174 (2%)
Query: 219 NPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHT 278
N K+ N+ + P HT+ + S D S D ++ + TG+ + + +H
Sbjct: 605 NKKNITNLSRLVVRP-HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHE 663
Query: 279 DSIECIGFSRSSPWAATGSMDQKLIIWD-LQHSLPRSTCDHEDGVTCLMWLGTSKYVV-- 335
D + C FS + AT S+D+K+ IW+ + L + +H + V C + +S +++
Sbjct: 664 DEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLA 723
Query: 336 TGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389
TG D +++WD +C T GH +++ S L S S DGT ++++
Sbjct: 724 TGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWD 777
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 112/254 (44%), Gaps = 18/254 (7%)
Query: 63 HSDEVYSVACSPTDATLVATGG-GDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQL 121
H V+ + + + TL+++ + + + W++++ + ++GH+++V + +L
Sbjct: 1008 HKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIF---LRGHQETVKDFRLLKNSRL 1064
Query: 122 LASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA 181
L S DG V++W+ +GN + G V + S D T +W+ D
Sbjct: 1065 L-SWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLL 1123
Query: 182 AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEG--- 238
L+ GH V C F+ D + TG D+ +R+WN +GE +H+ P EG
Sbjct: 1124 LPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCA--PLSEEGAAT 1181
Query: 239 ----LTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAA 294
+T L S D + +S G + N+ TG+ SS +T+ S +
Sbjct: 1182 HGGWVTDLCFSPDGKMLISAG--GYIKWWNVVTGE--SSQTFYTNGTNLKKIHVSPDFKT 1237
Query: 295 TGSMDQKLIIWDLQ 308
++D I++ LQ
Sbjct: 1238 YVTVDNLGILYILQ 1251
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 67/305 (21%), Positives = 119/305 (39%), Gaps = 23/305 (7%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
++ H D+V FS DGQ +AS G D +Q++ +G ++ V ++
Sbjct: 617 VRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDR 676
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK--TICTGSDDATLRVWNP 220
+ S D V +WN+ ++ + H V C FT + TGS D L++W+
Sbjct: 677 FIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDL 736
Query: 221 KSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM---------VNITTGKVV 271
E + + G HT + S D L S S DG++ + +I +
Sbjct: 737 NQKECRNTMFG---HTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFF 793
Query: 272 SSLVSHTDSIECIGFSRSSPWAATGSM-----DQKLIIWDLQHS--LPRSTCDHEDGVTC 324
+L + +E I + W+A G+ K+ ++D+ S L H +
Sbjct: 794 LNLEDPQEDMEVI--VKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQY 851
Query: 325 LMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGT 384
+ + V V +W++ S V GH + + S ++ S D T
Sbjct: 852 CDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQT 911
Query: 385 ARVFE 389
R++E
Sbjct: 912 IRLWE 916
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 87/197 (44%), Gaps = 6/197 (3%)
Query: 159 PRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVW 218
P + G E+ + + H +V FT D KT+ + SDDA ++VW
Sbjct: 977 PHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVW 1036
Query: 219 NPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHT 278
N + + I +RGH E + + +S L LS S DG+V + NI TG V H
Sbjct: 1037 NWQLDKCI-FLRGH---QETVKDFRLLKNSRL-LSWSFDGTVKVWNIITGNKEKDFVCHQ 1091
Query: 279 DSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDG-VTCLMWLGTSKYVVTG 337
++ S + ++ S D+ IW LP +G V C + S + TG
Sbjct: 1092 GTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATG 1151
Query: 338 CVDGKVRVWDSLSGDCV 354
+G++R+W+ +G+ +
Sbjct: 1152 DDNGEIRIWNVSNGELL 1168
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 66/136 (48%), Gaps = 8/136 (5%)
Query: 260 VHMVNITTGKVVSSLV--SHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCD 317
++ NIT +S LV HTD++ FS A+ D+ L ++ +
Sbjct: 604 INKKNITN---LSRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIK 660
Query: 318 -HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQA--ISVSAHQD 374
HED V C + +++ T VD KV++W+S++G+ V T+ H + + + S+H
Sbjct: 661 AHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHL 720
Query: 375 FLVSVSLDGTARVFEI 390
L + S D +++++
Sbjct: 721 LLATGSSDCFLKLWDL 736
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/304 (27%), Positives = 134/304 (44%), Gaps = 21/304 (6%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI-----NQGDWASEIQGHKDSVSSLA 114
GH+ V +A +P ++ + D W++ N G ++GH VS +
Sbjct: 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 93
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
S DGQ SG DG +++WD ++G G V V++ +++GS D T+
Sbjct: 94 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 153
Query: 175 MWNA-DRAAYLNMFSGHGSSVTCGDFTPDGKT--ICTGSDDATLRVWNPKSGENIHVIRG 231
+WN Y H V+C F+P+ I + D ++VWN N +
Sbjct: 154 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL---ANCKLKTN 210
Query: 232 HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSP 291
H HT L +T+S D +L SG KDG + ++ GK + +L D I + FS +
Sbjct: 211 HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL-DGGDIINALCFSPNRY 269
Query: 292 W--AATGS------MDQKLIIWDLQHSLPRSTCDHE-DGVTCLMWLGTSKYVVTGCVDGK 342
W AATG ++ K+I+ +L+ + ++ E T L W + + G D
Sbjct: 270 WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNL 329
Query: 343 VRVW 346
VRVW
Sbjct: 330 VRVW 333
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 97/215 (45%), Gaps = 7/215 (3%)
Query: 187 FSGHGSSVTCGDFTPD-GKTICTGSDDATLRVWNPKSGENIHVI--RGHPYHTEGLTCLT 243
GH VT TP I + S D T+ +W E + I R H+ ++ +
Sbjct: 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 93
Query: 244 ISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLI 303
IS+D ALSGS DG++ + ++TTG V HT + + FS + +GS D+ +
Sbjct: 94 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 153
Query: 304 IWDLQHSLPRSTCD--HEDGVTCLMW-LGTSKYVVTGC-VDGKVRVWDSLSGDCVRTFSG 359
+W+ + D H + V+C+ + +S ++ C D V+VW+ + G
Sbjct: 154 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIG 213
Query: 360 HRDAIQAISVSAHQDFLVSVSLDGTARVFEIADFK 394
H + ++VS S DG A ++++ + K
Sbjct: 214 HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK 248
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 98/222 (44%), Gaps = 12/222 (5%)
Query: 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWR-INQGDWASEIQGHKDSVSSLA 114
+T F GH+ +V SVA S +D + +G D W + + + + H + VS +
Sbjct: 120 TTRRFVGHTKDVLSVAFS-SDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVR 178
Query: 115 FSMDGQ--LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDST 172
FS + ++ S G D LV++W+ ++ LK G G + V+ P G + +G +D
Sbjct: 179 FSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQ 238
Query: 173 VWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
+W+ + +L G G + F+P+ +C + ++++W+ + + ++
Sbjct: 239 AMLWDLNEGKHLYTLDG-GDIINALCFSPNRYWLCAAT-GPSIKIWDLEGKIIVDELKQE 296
Query: 233 PYHTEG------LTCLTISADSTLALSGSKDGSVHMVNITTG 268
T T L SAD +G D V + +T G
Sbjct: 297 VISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/304 (27%), Positives = 134/304 (44%), Gaps = 21/304 (6%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI-----NQGDWASEIQGHKDSVSSLA 114
GH+ V +A +P ++ + D W++ N G ++GH VS +
Sbjct: 11 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 70
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
S DGQ SG DG +++WD ++G G V V++ +++GS D T+
Sbjct: 71 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 130
Query: 175 MWNA-DRAAYLNMFSGHGSSVTCGDFTPDGKT--ICTGSDDATLRVWNPKSGENIHVIRG 231
+WN Y H V+C F+P+ I + D ++VWN N +
Sbjct: 131 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL---ANCKLKTN 187
Query: 232 HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSP 291
H HT L +T+S D +L SG KDG + ++ GK + +L D I + FS +
Sbjct: 188 HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL-DGGDIINALCFSPNRY 246
Query: 292 W--AATGS------MDQKLIIWDLQHSLPRSTCDHE-DGVTCLMWLGTSKYVVTGCVDGK 342
W AATG ++ K+I+ +L+ + ++ E T L W + + G D
Sbjct: 247 WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNL 306
Query: 343 VRVW 346
VRVW
Sbjct: 307 VRVW 310
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 97/215 (45%), Gaps = 7/215 (3%)
Query: 187 FSGHGSSVTCGDFTPD-GKTICTGSDDATLRVWNPKSGENIHVI--RGHPYHTEGLTCLT 243
GH VT TP I + S D T+ +W E + I R H+ ++ +
Sbjct: 11 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 70
Query: 244 ISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLI 303
IS+D ALSGS DG++ + ++TTG V HT + + FS + +GS D+ +
Sbjct: 71 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 130
Query: 304 IWDLQHSLPRSTCD--HEDGVTCLMW-LGTSKYVVTGC-VDGKVRVWDSLSGDCVRTFSG 359
+W+ + D H + V+C+ + +S ++ C D V+VW+ + G
Sbjct: 131 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIG 190
Query: 360 HRDAIQAISVSAHQDFLVSVSLDGTARVFEIADFK 394
H + ++VS S DG A ++++ + K
Sbjct: 191 HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK 225
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 98/222 (44%), Gaps = 12/222 (5%)
Query: 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWR-INQGDWASEIQGHKDSVSSLA 114
+T F GH+ +V SVA S +D + +G D W + + + + H + VS +
Sbjct: 97 TTRRFVGHTKDVLSVAFS-SDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVR 155
Query: 115 FSMDGQ--LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDST 172
FS + ++ S G D LV++W+ ++ LK G G + V+ P G + +G +D
Sbjct: 156 FSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQ 215
Query: 173 VWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
+W+ + +L G G + F+P+ +C + ++++W+ + + ++
Sbjct: 216 AMLWDLNEGKHLYTLDG-GDIINALCFSPNRYWLCAAT-GPSIKIWDLEGKIIVDELKQE 273
Query: 233 PYHTEG------LTCLTISADSTLALSGSKDGSVHMVNITTG 268
T T L SAD +G D V + +T G
Sbjct: 274 VISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 315
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 138/317 (43%), Gaps = 35/317 (11%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA-----SEIQGHKDSVSSLA 114
H+D V ++A +A ++ + D W++ + D A + GH V +
Sbjct: 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVV 437
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
S DGQ SG DG +++WD ++G G V V++ +++ S D T+
Sbjct: 438 LSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIK 497
Query: 175 MWNADRAAYLNMFSG---HGSSVTCGDFTPD--GKTICTGSDDATLRVWNPKSGENIHVI 229
+WN + G H V+C F+P+ TI + S D T++VWN + + +
Sbjct: 498 LWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTL 557
Query: 230 RGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS 289
GH T ++ + +S D +L SG KDG V + ++ GK + SL +++ I + FS +
Sbjct: 558 AGH---TGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANS-VIHALCFSPN 613
Query: 290 SPWAATGSMDQKLIIWDLQ--------------------HSLPRSTCDHEDGVTCLMWLG 329
W + + + IWDL+ +S P +T T L W
Sbjct: 614 RYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSA 672
Query: 330 TSKYVVTGCVDGKVRVW 346
+ +G DG +RVW
Sbjct: 673 DGSTLFSGYTDGVIRVW 689
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 112/261 (42%), Gaps = 9/261 (3%)
Query: 103 IQGHKDSVSSLAFSMD-GQLLASGGLDGLVQIW-----DPSSGNLKCTLEGPGGGVEWVS 156
++ H D V+++A +D ++ S D + +W D + G + L G VE V
Sbjct: 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVV 437
Query: 157 WHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLR 216
G L+GS D + +W+ F GH V F+ D + I + S D T++
Sbjct: 438 LSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIK 497
Query: 217 VWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLA--LSGSKDGSVHMVNITTGKVVSSL 274
+WN + G H + ++C+ S ++ +S S D +V + N++ K+ S+L
Sbjct: 498 LWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTL 557
Query: 275 VSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYV 334
HT + + S A+G D +++WDL + + + L ++Y
Sbjct: 558 AGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALC-FSPNRYW 616
Query: 335 VTGCVDGKVRVWDSLSGDCVR 355
+ + +++WD S V
Sbjct: 617 LCAATEHGIKIWDLESKSIVE 637
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 89/197 (45%), Gaps = 8/197 (4%)
Query: 206 ICTGSDDATLRVWNPKSGENIHVI--RGHPYHTEGLTCLTISADSTLALSGSKDGSVHMV 263
I + S D ++ +W + + + R H+ + + +S+D ALSGS DG + +
Sbjct: 398 IVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLW 457
Query: 264 NITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDL----QHSLPRSTCDHE 319
++ G V HT + + FS + + S D+ + +W+ ++++ H
Sbjct: 458 DLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHR 517
Query: 320 DGVTCLMWLGTS--KYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLV 377
D V+C+ + + +V+ D V+VW+ + T +GH + ++VS
Sbjct: 518 DWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCA 577
Query: 378 SVSLDGTARVFEIADFK 394
S DG ++++A+ K
Sbjct: 578 SGGKDGVVLLWDLAEGK 594
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 102/232 (43%), Gaps = 32/232 (13%)
Query: 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI----QGHKDSVS 111
ST F GH+ +V SVA S D + + D W G+ I +GH+D VS
Sbjct: 464 STRRFVGHTKDVLSVAFS-LDNRQIVSASRDRTIKLWN-TLGECKYTISEGGEGHRDWVS 521
Query: 112 SLAFSMD--GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE 169
+ FS + + S D V++W+ S+ L+ TL G G V V+ P G + +G +
Sbjct: 522 CVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK 581
Query: 170 DSTVWMWNADRAAYLNMFSGHGSSVT---CGDFTPDGKTICTGSDDATLRVWNPKSGENI 226
D V +W D A ++S +SV C F+P+ +C ++ +++W+ +S +
Sbjct: 582 DGVVLLW--DLAEGKKLYSLEANSVIHALC--FSPNRYWLCAATEHG-IKIWDLESKSIV 636
Query: 227 HVIR------------GHPYHTEG----LTCLTISADSTLALSGSKDGSVHM 262
++ P T+ T L SAD + SG DG + +
Sbjct: 637 EDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRV 688
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 7/123 (5%)
Query: 273 SLVSHTDSIECIGFS-RSSPWAATGSMDQKLIIWDLQHS------LPRSTCDHEDGVTCL 325
++ +HTD + I ++ + S D+ +I+W L R H V +
Sbjct: 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDV 436
Query: 326 MWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTA 385
+ ++ ++G DG++R+WD +G R F GH + +++ S +VS S D T
Sbjct: 437 VLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTI 496
Query: 386 RVF 388
+++
Sbjct: 497 KLW 499
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 119/232 (51%), Gaps = 17/232 (7%)
Query: 164 VLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG 223
+++G D+T+ +W+ + + +GH SV C + D + I TGS D+T+RVW+ +G
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG 203
Query: 224 ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVH---MVNITTGKVVSSLVSHTDS 280
E ++ + +H E + L + ++ + ++ SKD S+ M + T + LV H +
Sbjct: 204 EMLNTL---IHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 258
Query: 281 IECIGFSRSSPWAATGSMDQKLIIWDLQH-SLPRSTCDHEDGVTCLMWLGTSKYVVTGCV 339
+ + F +A+G D+ + +W+ R+ H+ G+ CL + + VV+G
Sbjct: 259 VNVVDFDDKYIVSASG--DRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS 314
Query: 340 DGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391
D +R+WD G C+R GH + ++ I + +VS + DG +V+++
Sbjct: 315 DNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR--IVSGAYDGKIKVWDLV 364
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 121/278 (43%), Gaps = 34/278 (12%)
Query: 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLA 114
+ I +GH+ SV C D ++ TG D W +N G+ + + H ++V L
Sbjct: 164 ECKRILTGHTG---SVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLR 220
Query: 115 FSMDGQLLASGGLDGLVQIWD---PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS 171
F + ++ + D + +WD P+ L+ L G V V + + +++ S D
Sbjct: 221 F--NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK--YIVSASGDR 276
Query: 172 TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRG 231
T+ +WN ++ +GH + C + + + +GS D T+R+W+ + G + V+ G
Sbjct: 277 TIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEG 334
Query: 232 HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG---------KVVSSLVSHTDSIE 282
H E + C I D+ +SG+ DG + + ++ + +LV H+ +
Sbjct: 335 HE---ELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVF 389
Query: 283 CIGFSRSSPWAATGSMDQKLIIWDL------QHSLPRS 314
+ F + S D ++IWD Q PRS
Sbjct: 390 RLQFDEFQ--IVSSSHDDTILIWDFLNDPAAQAEPPRS 425
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 103/201 (51%), Gaps = 17/201 (8%)
Query: 194 VTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALS 253
V C + D + I +G D T+++W+ + E ++ G HT + CL D + ++
Sbjct: 136 VYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTG---HTGSVLCL--QYDERVIIT 188
Query: 254 GSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQH---- 309
GS D +V + ++ TG+++++L+ H +++ + F+ T S D+ + +WD+
Sbjct: 189 GSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGM--MVTCSKDRSIAVWDMASPTDI 246
Query: 310 SLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISV 369
+L R H V + + KY+V+ D ++VW++ + + VRT +GH+ I +
Sbjct: 247 TLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY 304
Query: 370 SAHQDFLVSVSLDGTARVFEI 390
+VS S D T R+++I
Sbjct: 305 --RDRLVVSGSSDNTIRLWDI 323
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 109/261 (41%), Gaps = 9/261 (3%)
Query: 140 NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDF 199
++K T V+ + +HP VL V +WN + + + V G F
Sbjct: 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKF 63
Query: 200 TPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGS 259
I GSDD +RV+N +GE + HP + + + + LSGS D +
Sbjct: 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHP---DYIRSIAVHPTKPYVLSGSDDLT 120
Query: 260 VHMVNITTG-KVVSSLVSHTDSIECIGFSRSSPWA-ATGSMDQKLIIWDLQHSLPRSTCD 317
V + N + + H + C+ F+ P A+G +D+ + +W L S P T
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Query: 318 --HEDGVTCLMW--LGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQ 373
E GV + + L Y++T D +++WD + CV T GH +
Sbjct: 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240
Query: 374 DFLVSVSLDGTARVFEIADFK 394
++S S DGT +++ + +K
Sbjct: 241 PIIISGSEDGTLKIWNSSTYK 261
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 14/169 (8%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDD---KGFFWRINQGDWASE--IQGHKDSVSSLA 114
F H D + S+A PT +++ G DD K + W + +WA E +GH+ V +A
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLS--GSDDLTVKLWNW---ENNWALEQTFEGHEHFVMCVA 147
Query: 115 FS-MDGQLLASGGLDGLVQIWDPSSGNLKCTLE-GPGGGVEWVSWHPR--GHIVLAGSED 170
F+ D ASG LD V++W TL G GV +V ++P ++ S+D
Sbjct: 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD 207
Query: 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219
T+ +W+ + + GH S+V+ F P I +GS+D TL++WN
Sbjct: 208 LTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 104/255 (40%), Gaps = 5/255 (1%)
Query: 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLA 114
D FS SD V + PT+ V T + W IQ + V +
Sbjct: 4 DIKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGK 62
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
F + G D +++++ ++G E + ++ HP VL+GS+D TV
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 175 MWN-ADRAAYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDATLRVWNP-KSGENIHVIRG 231
+WN + A F GH V C F P D T +G D T++VW+ +S N + G
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG 182
Query: 232 HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSP 291
+ + D ++ S D ++ + + T V++L H ++ F + P
Sbjct: 183 QERGVNYVDYYPL-PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP 241
Query: 292 WAATGSMDQKLIIWD 306
+GS D L IW+
Sbjct: 242 IIISGSEDGTLKIWN 256
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 97/211 (45%), Gaps = 8/211 (3%)
Query: 80 VATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD-PSS 138
+ G D + + N G+ + + H D + S+A + SG D V++W+ ++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 139 GNLKCTLEGPGGGVEWVSWHPRGHIVLA-GSEDSTVWMWNADRAA-YLNMFSGHGSSVTC 196
L+ T EG V V+++P+ A G D TV +W+ ++ + +G V
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 197 GDF--TPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSG 254
D+ PD + T SDD T+++W+ ++ + + GH ++ + +SG
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH---MSNVSFAVFHPTLPIIISG 246
Query: 255 SKDGSVHMVNITTGKVVSSLVSHTDSIECIG 285
S+DG++ + N +T KV +L + CI
Sbjct: 247 SEDGTLKIWNSSTYKVEKTLNVGLERSWCIA 277
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFSM- 117
F GH V VA +P D + A+G D W + Q + G + V+ + +
Sbjct: 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL 195
Query: 118 -DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMW 176
D + + D ++IWD + + TLEG V + +HP I+++GSED T+ +W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 177 NA 178
N+
Sbjct: 256 NS 257
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 76 DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135
D + T D W + ++GH +VS F ++ SG DG ++IW+
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 136 PSSGNLKCTLEGPGGGVEW-VSWHPRGH 162
S+ ++ TL G W ++ HP G
Sbjct: 257 SSTYKVEKTL-NVGLERSWCIATHPTGR 283
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 109/261 (41%), Gaps = 9/261 (3%)
Query: 140 NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDF 199
++K T V+ + +HP VL V +WN + + + V G F
Sbjct: 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKF 63
Query: 200 TPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGS 259
I GSDD +RV+N +GE + HP + + + + LSGS D +
Sbjct: 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHP---DYIRSIAVHPTKPYVLSGSDDLT 120
Query: 260 VHMVNITTG-KVVSSLVSHTDSIECIGFSRSSPWA-ATGSMDQKLIIWDLQHSLPRSTCD 317
V + N + + H + C+ F+ P A+G +D+ + +W L S P T
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Query: 318 --HEDGVTCLMW--LGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQ 373
E GV + + L Y++T D +++WD + CV T GH +
Sbjct: 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240
Query: 374 DFLVSVSLDGTARVFEIADFK 394
++S S DGT +++ + +K
Sbjct: 241 PIIISGSEDGTLKIWNSSTYK 261
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 14/169 (8%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDD---KGFFWRINQGDWASE--IQGHKDSVSSLA 114
F H D + S+A PT +++ G DD K + W + +WA E +GH+ V +A
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLS--GSDDLTVKLWNW---ENNWALEQTFEGHEHFVMCVA 147
Query: 115 FS-MDGQLLASGGLDGLVQIWDPSSGNLKCTLE-GPGGGVEWVSWHPR--GHIVLAGSED 170
F+ D ASG LD V++W TL G GV +V ++P ++ S+D
Sbjct: 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD 207
Query: 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219
T+ +W+ + + GH S+V+ F P I +GS+D TL++WN
Sbjct: 208 LTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 104/255 (40%), Gaps = 5/255 (1%)
Query: 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLA 114
D FS SD V + PT+ V T + W IQ + V +
Sbjct: 4 DIKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGK 62
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
F + G D +++++ ++G E + ++ HP VL+GS+D TV
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 175 MWN-ADRAAYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDATLRVWNP-KSGENIHVIRG 231
+WN + A F GH V C F P D T +G D T++VW+ +S N + G
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG 182
Query: 232 HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSP 291
+ + D ++ S D ++ + + T V++L H ++ F + P
Sbjct: 183 QERGVNYVDYYPL-PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP 241
Query: 292 WAATGSMDQKLIIWD 306
+GS D L IW+
Sbjct: 242 IIISGSEDGTLKIWN 256
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 97/211 (45%), Gaps = 8/211 (3%)
Query: 80 VATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD-PSS 138
+ G D + + N G+ + + H D + S+A + SG D V++W+ ++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 139 GNLKCTLEGPGGGVEWVSWHPRGHIVLA-GSEDSTVWMWNADRAA-YLNMFSGHGSSVTC 196
L+ T EG V V+++P+ A G D TV +W+ ++ + +G V
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 197 GDF--TPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSG 254
D+ PD + T SDD T+++W+ ++ + + GH ++ + +SG
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH---MSNVSFAVFHPTLPIIISG 246
Query: 255 SKDGSVHMVNITTGKVVSSLVSHTDSIECIG 285
S+DG++ + N +T KV +L + CI
Sbjct: 247 SEDGTLKIWNSSTYKVEKTLNVGLERSWCIA 277
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFSM- 117
F GH V VA +P D + A+G D W + Q + G + V+ + +
Sbjct: 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL 195
Query: 118 -DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMW 176
D + + D ++IWD + + TLEG V + +HP I+++GSED T+ +W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 177 NA 178
N+
Sbjct: 256 NS 257
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 76 DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135
D + T D W + ++GH +VS F ++ SG DG ++IW+
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 136 PSSGNLKCTLEGPGGGVEW-VSWHPRGH 162
S+ ++ TL G W ++ HP G
Sbjct: 257 SSTYKVEKTL-NVGLERSWCIATHPTGR 283
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 109/261 (41%), Gaps = 9/261 (3%)
Query: 140 NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDF 199
++K T V+ + +HP VL V +WN + + + V G F
Sbjct: 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKF 63
Query: 200 TPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGS 259
I GSDD +RV+N +GE + HP + + + + LSGS D +
Sbjct: 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHP---DYIRSIAVHPTKPYVLSGSDDLT 120
Query: 260 VHMVNITTG-KVVSSLVSHTDSIECIGFSRSSPWA-ATGSMDQKLIIWDLQHSLPRSTCD 317
V + N + + H + C+ F+ P A+G +D+ + +W L S P T
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Query: 318 --HEDGVTCLMW--LGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQ 373
E GV + + L Y++T D +++WD + CV T GH +
Sbjct: 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240
Query: 374 DFLVSVSLDGTARVFEIADFK 394
++S S DGT +++ + +K
Sbjct: 241 PIIISGSEDGTLKIWNSSTYK 261
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 14/169 (8%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDD---KGFFWRINQGDWASE--IQGHKDSVSSLA 114
F H D + S+A PT +++ G DD K + W + +WA E +GH+ V +A
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLS--GSDDLTVKLWNW---ENNWALEQTFEGHEHFVMCVA 147
Query: 115 FS-MDGQLLASGGLDGLVQIWDPSSGNLKCTLE-GPGGGVEWVSWHPR--GHIVLAGSED 170
F+ D ASG LD V++W TL G GV +V ++P ++ S+D
Sbjct: 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD 207
Query: 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219
T+ +W+ + + GH S+V+ F P I +GS+D TL++WN
Sbjct: 208 LTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 109/274 (39%), Gaps = 14/274 (5%)
Query: 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLA 114
D FS SD V + PT+ V T + W IQ + V +
Sbjct: 4 DIKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGK 62
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
F + G D +++++ ++G E + ++ HP VL+GS+D TV
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 175 MWN-ADRAAYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDATLRVWNP-KSGENIHVIRG 231
+WN + A F GH V C F P D T +G D T++VW+ +S N + G
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG 182
Query: 232 HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSP 291
+ + D ++ S D ++ + + T V++L H ++ F + P
Sbjct: 183 QERGVNYVDYYPL-PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP 241
Query: 292 WAATGSMDQKLIIWD---------LQHSLPRSTC 316
+GS D L IW+ L L RS C
Sbjct: 242 IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWC 275
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 97/211 (45%), Gaps = 8/211 (3%)
Query: 80 VATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD-PSS 138
+ G D + + N G+ + + H D + S+A + SG D V++W+ ++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 139 GNLKCTLEGPGGGVEWVSWHPRGHIVLA-GSEDSTVWMWNADRAA-YLNMFSGHGSSVTC 196
L+ T EG V V+++P+ A G D TV +W+ ++ + +G V
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 197 GDF--TPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSG 254
D+ PD + T SDD T+++W+ ++ + + GH ++ + +SG
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH---MSNVSFAVFHPTLPIIISG 246
Query: 255 SKDGSVHMVNITTGKVVSSLVSHTDSIECIG 285
S+DG++ + N +T KV +L + CI
Sbjct: 247 SEDGTLKIWNSSTYKVEKTLNVGLERSWCIA 277
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Query: 76 DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135
D + T D W + ++GH +VS F ++ SG DG ++IW+
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 136 PSSGNLKCTLEGPGGGVEW-VSWHPRGH 162
S+ ++ TL G W ++ HP G
Sbjct: 257 SSTYKVEKTL-NVGLERSWCIATHPTGR 283
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 109/261 (41%), Gaps = 9/261 (3%)
Query: 140 NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDF 199
++K T V+ + +HP VL V +WN + + + V G F
Sbjct: 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKF 63
Query: 200 TPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGS 259
I GSDD +RV+N +GE + HP + + + + LSGS D +
Sbjct: 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHP---DYIRSIAVHPTKPYVLSGSDDLT 120
Query: 260 VHMVNITTG-KVVSSLVSHTDSIECIGFSRSSPWA-ATGSMDQKLIIWDLQHSLPRSTCD 317
V + N + + H + C+ F+ P A+G +D+ + +W L S P T
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Query: 318 --HEDGVTCLMW--LGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQ 373
E GV + + L Y++T D +++WD + CV T GH +
Sbjct: 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240
Query: 374 DFLVSVSLDGTARVFEIADFK 394
++S S DGT +++ + +K
Sbjct: 241 PIIISGSEDGTLKIWNSSTYK 261
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 14/169 (8%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDD---KGFFWRINQGDWASE--IQGHKDSVSSLA 114
F H D + S+A PT +++ G DD K + W + +WA E +GH+ V +A
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLS--GSDDLTVKLWNW---ENNWALEQTFEGHEHFVMCVA 147
Query: 115 FS-MDGQLLASGGLDGLVQIWDPSSGNLKCTLE-GPGGGVEWVSWHPR--GHIVLAGSED 170
F+ D ASG LD V++W TL G GV +V ++P ++ S+D
Sbjct: 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD 207
Query: 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219
T+ +W+ + + GH S+V+ F P I +GS+D TL++WN
Sbjct: 208 LTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 109/274 (39%), Gaps = 14/274 (5%)
Query: 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLA 114
D FS SD V + PT+ V T + W IQ + V +
Sbjct: 4 DIKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGK 62
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
F + G D +++++ ++G E + ++ HP VL+GS+D TV
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 175 MWN-ADRAAYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDATLRVWNP-KSGENIHVIRG 231
+WN + A F GH V C F P D T +G D T++VW+ +S N + G
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG 182
Query: 232 HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSP 291
+ + D ++ S D ++ + + T V++L H ++ F + P
Sbjct: 183 QERGVNYVDYYPL-PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP 241
Query: 292 WAATGSMDQKLIIWD---------LQHSLPRSTC 316
+GS D L IW+ L L RS C
Sbjct: 242 IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWC 275
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 97/211 (45%), Gaps = 8/211 (3%)
Query: 80 VATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD-PSS 138
+ G D + + N G+ + + H D + S+A + SG D V++W+ ++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 139 GNLKCTLEGPGGGVEWVSWHPRGHIVLA-GSEDSTVWMWNADRAA-YLNMFSGHGSSVTC 196
L+ T EG V V+++P+ A G D TV +W+ ++ + +G V
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 197 GDF--TPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSG 254
D+ PD + T SDD T+++W+ ++ + + GH ++ + +SG
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH---MSNVSFAVFHPTLPIIISG 246
Query: 255 SKDGSVHMVNITTGKVVSSLVSHTDSIECIG 285
S+DG++ + N +T KV +L + CI
Sbjct: 247 SEDGTLKIWNSSTYKVEKTLNVGLERSWCIA 277
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEW-VSWHPRG 161
++GH +VS F ++ SG DG ++IW+ S+ ++ TL G W ++ HP G
Sbjct: 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL-NVGLERSWCIATHPTG 282
Query: 162 H 162
Sbjct: 283 R 283
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/309 (25%), Positives = 136/309 (44%), Gaps = 27/309 (8%)
Query: 60 FSGHSDEVYSVAC--SPTDATLVATGGGDDKGFFWRINQGDWASE---------IQGHKD 108
+GH V S+AC +P AT V + D W N +SE ++GH
Sbjct: 9 LTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSA 68
Query: 109 SVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS 168
VS +A S +G S D +++W+ +G + G V V++ P +++G
Sbjct: 69 FVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGG 128
Query: 169 EDSTVWMWNADRAAYLNMFSG-HGSSVTCGDFTP--DGKTICTGSDDATLRVWNPKSGEN 225
D+ + +WN + G H V+C F+P D I +G D ++VW+ +G
Sbjct: 129 RDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRL 188
Query: 226 IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIG 285
+ ++GH T +T +T+S D +L S KDG + ++T G+ +S + + I I
Sbjct: 189 VTDLKGH---TNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGA-PINQIC 244
Query: 286 FSRSSPWAATGSMDQKLIIWDLQHS------LPRSTCDHEDGVTC--LMWLGTSKYVVTG 337
FS + W + ++ + I+DL++ P + C + W + +G
Sbjct: 245 FSPNRYWMCAAT-EKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSG 303
Query: 338 CVDGKVRVW 346
D +RVW
Sbjct: 304 YTDNVIRVW 312
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 101/221 (45%), Gaps = 18/221 (8%)
Query: 102 EIQGHKDSVSSLAFSMDGQL---LASGGLDGLVQIWDP---------SSGNLKCTLEGPG 149
++ GH+ V+SLA + + S D + W P S G LEG
Sbjct: 8 QLTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHS 67
Query: 150 GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG 209
V V+ G+ ++ S D ++ +WN F GH V F+PD + I +G
Sbjct: 68 AFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSG 127
Query: 210 SDDATLRVWNPKSGENIHVI-RGHPYHTEGLTCLTISA--DSTLALSGSKDGSVHMVNIT 266
D LRVWN K GE +H + RG HT+ ++C+ S D+ + +SG D V + ++
Sbjct: 128 GRDNALRVWNVK-GECMHTLSRGA--HTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLA 184
Query: 267 TGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDL 307
TG++V+ L HT+ + + S A+ D +WDL
Sbjct: 185 TGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDL 225
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 103/224 (45%), Gaps = 17/224 (7%)
Query: 182 AYLNMFSGHG---SSVTCGDFTPDGKTICTGSDDATLRVWNPK----SGENIHVI--RGH 232
AY +GH +S+ C + + S D TL W P S E + + R
Sbjct: 4 AYEGQLTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRL 63
Query: 233 PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPW 292
H+ ++ + +S + A+S S D S+ + N+ G+ + HT + + FS +
Sbjct: 64 EGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQ 123
Query: 293 AATGSMDQKLIIWDLQ----HSLPRSTCDHEDGVTCLMWLGT--SKYVVTGCVDGKVRVW 346
+G D L +W+++ H+L R H D V+C+ + + + +V+G D V+VW
Sbjct: 124 IVSGGRDNALRVWNVKGECMHTLSRGA--HTDWVSCVRFSPSLDAPVIVSGGWDNLVKVW 181
Query: 347 DSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEI 390
D +G V GH + + +++VS S DG AR++++
Sbjct: 182 DLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDL 225
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 108/219 (49%), Gaps = 12/219 (5%)
Query: 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ--GHKDS 109
Q + F GH+ +V SVA SP + +V +GG D+ W + +G+ + H D
Sbjct: 97 QNGQCQYKFLGHTKDVLSVAFSPDNRQIV-SGGRDNALRVWNV-KGECMHTLSRGAHTDW 154
Query: 110 VSSLAF--SMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAG 167
VS + F S+D ++ SGG D LV++WD ++G L L+G V V+ P G + +
Sbjct: 155 VSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASS 214
Query: 168 SEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIH 227
+D +W+ + L+ + G+ + F+P+ +C ++ +R+++ ++ + I
Sbjct: 215 DKDGVARLWDLTKGEALSEMAA-GAPINQICFSPNRYWMCAATEKG-IRIFDLENKDIIV 272
Query: 228 VIRGHPYHTEGLT--CLTI--SADSTLALSGSKDGSVHM 262
+ ++ + C++I SAD + SG D + +
Sbjct: 273 ELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRV 311
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 120/312 (38%), Gaps = 24/312 (7%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-----ASEIQGHKDSVSSLA 114
GH+ V S+A S L+ + D W++ D +GH V
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
+ DG S D +++WD ++G G V V + ++++GS D T+
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 175 MWNADRAAYLNMFSGHGSSVTCGDFTPDGK------TICTGSDDATLRVWNPKSGENIHV 228
+W + L GH V+ P+ K TI + +D ++ WN +
Sbjct: 133 VWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL---NQFQI 188
Query: 229 IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSR 288
H + LT S D TL S KDG + + N+ K + +L S D + + FS
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL-SAQDEVFSLAFSP 247
Query: 289 SSPWAATG--------SMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVD 340
+ W A S+D + ++ DL+ + E L W + + G D
Sbjct: 248 NRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTD 307
Query: 341 GKVRVWDSLSGD 352
+RVW ++ +
Sbjct: 308 NVIRVWQVMTAN 319
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 83/200 (41%), Gaps = 14/200 (7%)
Query: 206 ICTGSDDATLRVW-----NPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
+ + S D TL W + K G + +GH + + C T++AD ALS S D ++
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD--C-TLTADGAYALSASWDKTL 89
Query: 261 HMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHED 320
+ ++ TG+ V H + + + + +GS D+ + +W ++ + H D
Sbjct: 90 RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHND 149
Query: 321 GVTCLMWLGTSKY------VVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQD 374
V+ + + K +++ D V+ W+ F GH I ++ S
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT 209
Query: 375 FLVSVSLDGTARVFEIADFK 394
+ S DG ++ +A K
Sbjct: 210 LIASAGKDGEIMLWNLAAKK 229
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 120/312 (38%), Gaps = 24/312 (7%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-----ASEIQGHKDSVSSLA 114
GH+ V S+A S L+ + D W++ D +GH V
Sbjct: 7 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 66
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
+ DG S D +++WD ++G G V V + ++++GS D T+
Sbjct: 67 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 126
Query: 175 MWNADRAAYLNMFSGHGSSVTCGDFTPDGK------TICTGSDDATLRVWNPKSGENIHV 228
+W + L GH V+ P+ K TI + +D ++ WN +
Sbjct: 127 VWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL---NQFQI 182
Query: 229 IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSR 288
H + LT S D TL S KDG + + N+ K + +L S D + + FS
Sbjct: 183 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL-SAQDEVFSLAFSP 241
Query: 289 SSPWAATG--------SMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVD 340
+ W A S+D + ++ DL+ + E L W + + G D
Sbjct: 242 NRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTD 301
Query: 341 GKVRVWDSLSGD 352
+RVW ++ +
Sbjct: 302 NVIRVWQVMTAN 313
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 83/200 (41%), Gaps = 14/200 (7%)
Query: 206 ICTGSDDATLRVW-----NPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
+ + S D TL W + K G + +GH + + C T++AD ALS S D ++
Sbjct: 27 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD--C-TLTADGAYALSASWDKTL 83
Query: 261 HMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHED 320
+ ++ TG+ V H + + + + +GS D+ + +W ++ + H D
Sbjct: 84 RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHND 143
Query: 321 GVTCLMWLGTSKY------VVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQD 374
V+ + + K +++ D V+ W+ F GH I ++ S
Sbjct: 144 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT 203
Query: 375 FLVSVSLDGTARVFEIADFK 394
+ S DG ++ +A K
Sbjct: 204 LIASAGKDGEIMLWNLAAKK 223
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 120/312 (38%), Gaps = 24/312 (7%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-----ASEIQGHKDSVSSLA 114
GH+ V S+A S L+ + D W++ D +GH V
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
+ DG S D +++WD ++G G V V + ++++GS D T+
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 175 MWNADRAAYLNMFSGHGSSVTCGDFTPDGK------TICTGSDDATLRVWNPKSGENIHV 228
+W + L GH V+ P+ K TI + +D ++ WN +
Sbjct: 133 VWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL---NQFQI 188
Query: 229 IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSR 288
H + LT S D TL S KDG + + N+ K + +L S D + + FS
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL-SAQDEVFSLAFSP 247
Query: 289 SSPWAATG--------SMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVD 340
+ W A S+D + ++ DL+ + E L W + + G D
Sbjct: 248 NRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTD 307
Query: 341 GKVRVWDSLSGD 352
+RVW ++ +
Sbjct: 308 NVIRVWQVMTAN 319
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 83/200 (41%), Gaps = 14/200 (7%)
Query: 206 ICTGSDDATLRVW-----NPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
+ + S D TL W + K G + +GH + + C T++AD ALS S D ++
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD--C-TLTADGAYALSASWDKTL 89
Query: 261 HMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHED 320
+ ++ TG+ V H + + + + +GS D+ + +W ++ + H D
Sbjct: 90 RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHND 149
Query: 321 GVTCLMWLGTSKY------VVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQD 374
V+ + + K +++ D V+ W+ F GH I ++ S
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT 209
Query: 375 FLVSVSLDGTARVFEIADFK 394
+ S DG ++ +A K
Sbjct: 210 LIASAGKDGEIMLWNLAAKK 229
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 120/312 (38%), Gaps = 24/312 (7%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-----ASEIQGHKDSVSSLA 114
GH+ V S+A S L+ + D W++ D +GH V
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
+ DG S D +++WD ++G G V V + ++++GS D T+
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 175 MWNADRAAYLNMFSGHGSSVTCGDFTPDGK------TICTGSDDATLRVWNPKSGENIHV 228
+W + L GH V+ P+ K TI + +D ++ WN +
Sbjct: 133 VWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL---NQFQI 188
Query: 229 IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSR 288
H + LT S D TL S KDG + + N+ K + +L S D + + FS
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL-SAQDEVFSLAFSP 247
Query: 289 SSPWAATG--------SMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVD 340
+ W A S+D + ++ DL+ + E L W + + G D
Sbjct: 248 NRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTD 307
Query: 341 GKVRVWDSLSGD 352
+RVW ++ +
Sbjct: 308 NVIRVWQVMTAN 319
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 83/200 (41%), Gaps = 14/200 (7%)
Query: 206 ICTGSDDATLRVW-----NPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
+ + S D TL W + K G + +GH + + C T++AD ALS S D ++
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD--C-TLTADGAYALSASWDKTL 89
Query: 261 HMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHED 320
+ ++ TG+ V H + + + + +GS D+ + +W ++ + H D
Sbjct: 90 RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHND 149
Query: 321 GVTCLMWLGTSKY------VVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQD 374
V+ + + K +++ D V+ W+ F GH I ++ S
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT 209
Query: 375 FLVSVSLDGTARVFEIADFK 394
+ S DG ++ +A K
Sbjct: 210 LIASAGKDGEIMLWNLAAKK 229
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 115/256 (44%), Gaps = 7/256 (2%)
Query: 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD----WASEIQGHKDSV 110
+ H S V + A +P+ VA GG D+ + + + + E+ GH +
Sbjct: 88 NKVHAIPLRSSWVMTCAYAPS-GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYL 146
Query: 111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED 170
S F D Q++ S G D +WD +G T G G V +S P + ++G+ D
Sbjct: 147 SCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205
Query: 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
++ +W+ F+GH S + F P+G TGSDDAT R+++ ++ + + +
Sbjct: 206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL-MTY 264
Query: 231 GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSS 290
H G+T ++ S L L+G D + ++ + L H + + C+G +
Sbjct: 265 SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324
Query: 291 PWAATGSMDQKLIIWD 306
ATGS D L IW+
Sbjct: 325 MAVATGSWDSFLKIWN 340
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 121/275 (44%), Gaps = 11/275 (4%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
++GH + ++ + D +LL S DG + IWD + N + V ++ P G+
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 163 IVLAGSEDSTVWMWNAD-RAAYLNM---FSGHGSSVTCGDFTPDGKTICTGSDDATLRVW 218
V G D+ ++N R + + +GH ++C F D + I T S D T +W
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALW 169
Query: 219 NPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHT 278
+ E HT + L+++ D+ L +SG+ D S + ++ G + H
Sbjct: 170 DI---ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226
Query: 279 DSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHED---GVTCLMWLGTSKYVV 335
I I F + ATGS D ++DL+ T H++ G+T + + + + ++
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL 286
Query: 336 TGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVS 370
G D VWD+L D +GH + + + V+
Sbjct: 287 AGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 321
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 83/209 (39%), Gaps = 9/209 (4%)
Query: 187 FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA 246
GH + + + D + + + S D L +W+ + +H I P + + +
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAI---PLRSSWVMTCAYAP 107
Query: 247 DSTLALSGSKDGSVHMVNITTG----KVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKL 302
G D + N+ T +V L HT + C F + T S D
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTC 166
Query: 303 IIWDLQHSLPRSTCD-HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHR 361
+WD++ +T H V L ++ V+G D ++WD G C +TF+GH
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226
Query: 362 DAIQAISVSAHQDFLVSVSLDGTARVFEI 390
I AI + + + S D T R+F++
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDL 255
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 115/256 (44%), Gaps = 7/256 (2%)
Query: 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD----WASEIQGHKDSV 110
+ H S V + A +P+ VA GG D+ + + + + E+ GH +
Sbjct: 88 NKVHAIPLRSSWVMTCAYAPS-GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYL 146
Query: 111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED 170
S F D Q++ S G D +WD +G T G G V +S P + ++G+ D
Sbjct: 147 SCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205
Query: 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
++ +W+ F+GH S + F P+G TGSDDAT R+++ ++ + + +
Sbjct: 206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL-MTY 264
Query: 231 GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSS 290
H G+T ++ S L L+G D + ++ + L H + + C+G +
Sbjct: 265 SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324
Query: 291 PWAATGSMDQKLIIWD 306
ATGS D L IW+
Sbjct: 325 MAVATGSWDSFLKIWN 340
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 121/275 (44%), Gaps = 11/275 (4%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
++GH + ++ + D +LL S DG + IWD + N + V ++ P G+
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 163 IVLAGSEDSTVWMWNAD-RAAYLNM---FSGHGSSVTCGDFTPDGKTICTGSDDATLRVW 218
V G D+ ++N R + + +GH ++C F D + I T S D T +W
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALW 169
Query: 219 NPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHT 278
+ E HT + L+++ D+ L +SG+ D S + ++ G + H
Sbjct: 170 DI---ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226
Query: 279 DSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHED---GVTCLMWLGTSKYVV 335
I I F + ATGS D ++DL+ T H++ G+T + + + + ++
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL 286
Query: 336 TGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVS 370
G D VWD+L D +GH + + + V+
Sbjct: 287 AGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 321
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 83/209 (39%), Gaps = 9/209 (4%)
Query: 187 FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA 246
GH + + + D + + + S D L +W+ + +H I P + + +
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAI---PLRSSWVMTCAYAP 107
Query: 247 DSTLALSGSKDGSVHMVNITTG----KVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKL 302
G D + N+ T +V L HT + C F + T S D
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTC 166
Query: 303 IIWDLQHSLPRSTCD-HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHR 361
+WD++ +T H V L ++ V+G D ++WD G C +TF+GH
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226
Query: 362 DAIQAISVSAHQDFLVSVSLDGTARVFEI 390
I AI + + + S D T R+F++
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDL 255
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 115/256 (44%), Gaps = 7/256 (2%)
Query: 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD----WASEIQGHKDSV 110
+ H S V + A +P+ VA GG D+ + + + + E+ GH +
Sbjct: 88 NKVHAIPLRSSWVMTCAYAPS-GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYL 146
Query: 111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED 170
S F D Q++ S G D +WD +G T G G V +S P + ++G+ D
Sbjct: 147 SCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205
Query: 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
++ +W+ F+GH S + F P+G TGSDDAT R+++ ++ + + +
Sbjct: 206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL-MTY 264
Query: 231 GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSS 290
H G+T ++ S L L+G D + ++ + L H + + C+G +
Sbjct: 265 SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324
Query: 291 PWAATGSMDQKLIIWD 306
ATGS D L IW+
Sbjct: 325 MAVATGSWDSFLKIWN 340
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 121/275 (44%), Gaps = 11/275 (4%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
++GH + ++ + D +LL S DG + IWD + N + V ++ P G+
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 163 IVLAGSEDSTVWMWNAD-RAAYLNM---FSGHGSSVTCGDFTPDGKTICTGSDDATLRVW 218
V G D+ ++N R + + +GH ++C F D + I T S D T +W
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALW 169
Query: 219 NPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHT 278
+ E HT + L+++ D+ L +SG+ D S + ++ G + H
Sbjct: 170 DI---ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226
Query: 279 DSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHED---GVTCLMWLGTSKYVV 335
I I F + ATGS D ++DL+ T H++ G+T + + + + ++
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL 286
Query: 336 TGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVS 370
G D VWD+L D +GH + + + V+
Sbjct: 287 AGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 321
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 83/209 (39%), Gaps = 9/209 (4%)
Query: 187 FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA 246
GH + + + D + + + S D L +W+ + +H I P + + +
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAI---PLRSSWVMTCAYAP 107
Query: 247 DSTLALSGSKDGSVHMVNITTG----KVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKL 302
G D + N+ T +V L HT + C F + T S D
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTC 166
Query: 303 IIWDLQHSLPRSTCD-HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHR 361
+WD++ +T H V L ++ V+G D ++WD G C +TF+GH
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226
Query: 362 DAIQAISVSAHQDFLVSVSLDGTARVFEI 390
I AI + + + S D T R+F++
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDL 255
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 115/256 (44%), Gaps = 7/256 (2%)
Query: 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD----WASEIQGHKDSV 110
+ H S V + A +P+ VA GG D+ + + + + E+ GH +
Sbjct: 88 NKVHAIPLRSSWVMTCAYAPS-GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYL 146
Query: 111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED 170
S F D Q++ S G D +WD +G T G G V +S P + ++G+ D
Sbjct: 147 SCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205
Query: 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
++ +W+ F+GH S + F P+G TGSDDAT R+++ ++ + + +
Sbjct: 206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL-MTY 264
Query: 231 GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSS 290
H G+T ++ S L L+G D + ++ + L H + + C+G +
Sbjct: 265 SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324
Query: 291 PWAATGSMDQKLIIWD 306
ATGS D L IW+
Sbjct: 325 MAVATGSWDSFLKIWN 340
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 121/275 (44%), Gaps = 11/275 (4%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
++GH + ++ + D +LL S DG + IWD + N + V ++ P G+
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 163 IVLAGSEDSTVWMWNAD-RAAYLNM---FSGHGSSVTCGDFTPDGKTICTGSDDATLRVW 218
V G D+ ++N R + + +GH ++C F D + I T S D T +W
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALW 169
Query: 219 NPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHT 278
+ E HT + L+++ D+ L +SG+ D S + ++ G + H
Sbjct: 170 DI---ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226
Query: 279 DSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHED---GVTCLMWLGTSKYVV 335
I I F + ATGS D ++DL+ T H++ G+T + + + + ++
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL 286
Query: 336 TGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVS 370
G D VWD+L D +GH + + + V+
Sbjct: 287 AGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 321
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 83/209 (39%), Gaps = 9/209 (4%)
Query: 187 FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA 246
GH + + + D + + + S D L +W+ + +H I P + + +
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAI---PLRSSWVMTCAYAP 107
Query: 247 DSTLALSGSKDGSVHMVNITTG----KVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKL 302
G D + N+ T +V L HT + C F + T S D
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTC 166
Query: 303 IIWDLQHSLPRSTCD-HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHR 361
+WD++ +T H V L ++ V+G D ++WD G C +TF+GH
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226
Query: 362 DAIQAISVSAHQDFLVSVSLDGTARVFEI 390
I AI + + + S D T R+F++
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDL 255
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 115/256 (44%), Gaps = 7/256 (2%)
Query: 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD----WASEIQGHKDSV 110
+ H S V + A +P+ VA GG D+ + + + + E+ GH +
Sbjct: 99 NKVHAIPLRSSWVMTCAYAPS-GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYL 157
Query: 111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED 170
S F D Q++ S G D +WD +G T G G V +S P + ++G+ D
Sbjct: 158 SCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 216
Query: 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
++ +W+ F+GH S + F P+G TGSDDAT R+++ ++ + + +
Sbjct: 217 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL-MTY 275
Query: 231 GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSS 290
H G+T ++ S L L+G D + ++ + L H + + C+G +
Sbjct: 276 SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 335
Query: 291 PWAATGSMDQKLIIWD 306
ATGS D L IW+
Sbjct: 336 MAVATGSWDSFLKIWN 351
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 121/275 (44%), Gaps = 11/275 (4%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
++GH + ++ + D +LL S DG + IWD + N + V ++ P G+
Sbjct: 62 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 121
Query: 163 IVLAGSEDSTVWMWNAD-RAAYLNM---FSGHGSSVTCGDFTPDGKTICTGSDDATLRVW 218
V G D+ ++N R + + +GH ++C F D + I T S D T +W
Sbjct: 122 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALW 180
Query: 219 NPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHT 278
+ E HT + L+++ D+ L +SG+ D S + ++ G + H
Sbjct: 181 DI---ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 237
Query: 279 DSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHED---GVTCLMWLGTSKYVV 335
I I F + ATGS D ++DL+ T H++ G+T + + + + ++
Sbjct: 238 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL 297
Query: 336 TGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVS 370
G D VWD+L D +GH + + + V+
Sbjct: 298 AGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 332
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 83/209 (39%), Gaps = 9/209 (4%)
Query: 187 FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA 246
GH + + + D + + + S D L +W+ + +H I P + + +
Sbjct: 62 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAI---PLRSSWVMTCAYAP 118
Query: 247 DSTLALSGSKDGSVHMVNITTG----KVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKL 302
G D + N+ T +V L HT + C F + T S D
Sbjct: 119 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTC 177
Query: 303 IIWDLQHSLPRSTCD-HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHR 361
+WD++ +T H V L ++ V+G D ++WD G C +TF+GH
Sbjct: 178 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 237
Query: 362 DAIQAISVSAHQDFLVSVSLDGTARVFEI 390
I AI + + + S D T R+F++
Sbjct: 238 SDINAICFFPNGNAFATGSDDATCRLFDL 266
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 71/306 (23%), Positives = 117/306 (38%), Gaps = 24/306 (7%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-----ASEIQGHKDSVSSLA 114
GH+ V S+A S L+ + D W++ D +GH V
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
+ DG S D +++WD ++G G V V + ++++GS D T+
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 175 MWNADRAAYLNMFSGHGSSVTCGDFTPDGK------TICTGSDDATLRVWNPKSGENIHV 228
+W + L GH V+ P+ K TI + +D ++ WN +
Sbjct: 133 VWTI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL---NQFQI 188
Query: 229 IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSR 288
H + LT S D TL S KDG + + N+ K + +L S D + + FS
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL-SAQDEVFSLAFSP 247
Query: 289 SSPWAATG--------SMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVD 340
+ W A S+D + ++ DL+ + E L W + + G D
Sbjct: 248 NRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTD 307
Query: 341 GKVRVW 346
+RVW
Sbjct: 308 NVIRVW 313
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 83/200 (41%), Gaps = 14/200 (7%)
Query: 206 ICTGSDDATLRVW-----NPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
+ + S D TL W + K G + +GH + + C T++AD ALS S D ++
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD--C-TLTADGAYALSASWDKTL 89
Query: 261 HMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHED 320
+ ++ TG+ V H + + + + +GS D+ + +W ++ + H D
Sbjct: 90 RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHND 149
Query: 321 GVTCLMWLGTSKY------VVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQD 374
V+ + + K +++ D V+ W+ F GH I ++ S
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT 209
Query: 375 FLVSVSLDGTARVFEIADFK 394
+ S DG ++ +A K
Sbjct: 210 LIASAGKDGEIMLWNLAAKK 229
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 142/310 (45%), Gaps = 15/310 (4%)
Query: 90 FFWRINQ-GDWASEIQGHKDSVSSLAFSMD----GQLLASGGLDGLVQIWD--PSSGNLK 142
+F NQ G + Q H D++ S+A+ + + + +G LD LV++W +L+
Sbjct: 14 YFQGTNQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQ 73
Query: 143 CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPD 202
+LEG GV V I + S D+ + +W+ + + F+PD
Sbjct: 74 WSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPD 133
Query: 203 GKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTI--SADSTLALSGSKDGSV 260
+ + TG+ + ++ +SG+ + + T G L+I S D SG+ DG +
Sbjct: 134 SQYLATGTHVGKVNIFGVESGK-----KEYSLDTRGKFILSIAYSPDGKYLASGAIDGII 188
Query: 261 HMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHS-LPRSTCDHE 319
++ +I TGK++ +L H I + FS S T S D + I+D+QH+ L + H
Sbjct: 189 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA 248
Query: 320 DGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSV 379
V + + + V+ D V+VWD + CV TF H+D + + + + +VSV
Sbjct: 249 SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSV 308
Query: 380 SLDGTARVFE 389
D +++
Sbjct: 309 GDDQEIHIYD 318
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 92/190 (48%), Gaps = 2/190 (1%)
Query: 202 DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVH 261
+ +T+ TGS D ++VW + E + + H G+ + IS +A S S D +
Sbjct: 47 NSETVVTGSLDDLVKVWKWRD-ERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR 105
Query: 262 MVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHE-D 320
+ ++ GK + S+ + + FS S + ATG+ K+ I+ ++ + D
Sbjct: 106 LWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGK 165
Query: 321 GVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVS 380
+ + + KY+ +G +DG + ++D +G + T GH I++++ S LV+ S
Sbjct: 166 FILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS 225
Query: 381 LDGTARVFEI 390
DG +++++
Sbjct: 226 DDGYIKIYDV 235
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 84/167 (50%), Gaps = 1/167 (0%)
Query: 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASG 125
+ +++A SP D+ +ATG K + + G + + S+A+S DG+ LASG
Sbjct: 124 DAWTLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG 182
Query: 126 GLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN 185
+DG++ I+D ++G L TLEG + +++ P +++ S+D + +++ A
Sbjct: 183 AIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAG 242
Query: 186 MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
SGH S V F PD + S D +++VW+ + +H H
Sbjct: 243 TLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDH 289
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 76/173 (43%), Gaps = 1/173 (0%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
GH V SV S T + A+ D W + G I +LAFS D
Sbjct: 76 LEGHQLGVVSVDISHT-LPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS 134
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
Q LA+G G V I+ SG + +L+ G + +++ P G + +G+ D + +++
Sbjct: 135 QYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIA 194
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
L+ GH + F+PD + + T SDD +++++ + + GH
Sbjct: 195 TGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH 247
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 273 SLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDH--EDGVTCLMWLGT 330
SL H + + S + P AA+ S+D + +WDL++ + D D T L +
Sbjct: 75 SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWT-LAFSPD 133
Query: 331 SKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEI 390
S+Y+ TG GKV ++ SG + I +I+ S +L S ++DG +F+I
Sbjct: 134 SQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDI 193
Query: 391 A 391
A
Sbjct: 194 A 194
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 311 LPRSTCDHEDGVTCLMWLGTSKY-----VVTGCVDGKVRVWD--SLSGDCVRTFSGHRDA 363
L + H+D + + W GT+K VVTG +D V+VW D + GH+
Sbjct: 24 LFKQEQAHDDAIWSVAW-GTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLG 82
Query: 364 IQAISVSAHQDFLVSVSLDGTARVFEIADFK 394
+ ++ +S S SLD R++++ + K
Sbjct: 83 VVSVDISHTLPIAASSSLDAHIRLWDLENGK 113
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 125/296 (42%), Gaps = 14/296 (4%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
++GH + V + + D + + S DG V +WD + N + + P V ++ P G
Sbjct: 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGC 119
Query: 163 IVLAGSEDSTVWMW------NADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLR 216
+ G D+ ++ N + AA + H + ++ FT I T S D T
Sbjct: 120 AIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCA 179
Query: 217 VWNPKSGENIHVIRGHPYHTEGLTCLTISADST--LALSGSKDGSVHMVNITTGKVVSSL 274
+W+ +SG+ + GH + CL ++ T +SG D + ++ +G+ V +
Sbjct: 180 LWDVESGQLLQSFHGHG---ADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF 236
Query: 275 VSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHED---GVTCLMWLGTS 331
+H + + + S A+GS D ++DL+ + E G + + + +
Sbjct: 237 ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSG 296
Query: 332 KYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARV 387
+ + G D + VWD L G V GH + + + VS S S D T RV
Sbjct: 297 RLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRV 352
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 107/248 (43%), Gaps = 12/248 (4%)
Query: 67 VYSVACSPTDATLVATGGGDDKGFFWRI------NQGDWASEIQGHKDSVSSLAFS-MDG 119
V + A +P+ +A GG D+K + + N + H + +S+ +F+ D
Sbjct: 109 VMACAYAPSGCA-IACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM 167
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPR--GHIVLAGSEDSTVWMWN 177
Q+L + G DG +WD SG L + G G V + P G+ ++G D +W+
Sbjct: 168 QILTASG-DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWD 226
Query: 178 ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE 237
+ F H S V + P G +GSDDAT R+++ ++ + +
Sbjct: 227 MRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESI-IF 285
Query: 238 GLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGS 297
G + + S L +G D ++++ ++ G VS L H + + + S +GS
Sbjct: 286 GASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGS 345
Query: 298 MDQKLIIW 305
D L +W
Sbjct: 346 WDHTLRVW 353
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 3/162 (1%)
Query: 60 FSGHSDEVYSVACSPTDA-TLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD 118
F GH +V + +P++ +GG D K W + G + H+ V+S+ +
Sbjct: 192 FHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPS 251
Query: 119 GQLLASGGLDGLVQIWDPSSGNLKCTL--EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMW 176
G ASG D +++D + E G V + G ++ AG D T+ +W
Sbjct: 252 GDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVW 311
Query: 177 NADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVW 218
+ + + +++ GH + V+ +PDG C+GS D TLRVW
Sbjct: 312 DVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 88/212 (41%), Gaps = 10/212 (4%)
Query: 187 FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA 246
GHG+ V C D+ D + I + S D + VW+ + H + P T + C +
Sbjct: 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVT-MPC-TWVMACAYAPS 117
Query: 247 DSTLALSGSKDG-SVHMV----NITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQK 301
+A G + SV+ + N S+ HT+ + F+ S T S D
Sbjct: 118 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGT 177
Query: 302 LIIWDLQH-SLPRSTCDHEDGVTCLMWL--GTSKYVVTGCVDGKVRVWDSLSGDCVRTFS 358
+WD++ L +S H V CL T V+G D K VWD SG CV+ F
Sbjct: 178 CALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFE 237
Query: 359 GHRDAIQAISVSAHQDFLVSVSLDGTARVFEI 390
H + ++ D S S D T R++++
Sbjct: 238 THESDVNSVRYYPSGDAFASGSDDATCRLYDL 269
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 313 RSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLS 350
R+ H + V C+ W + +V+ DGKV VWDS +
Sbjct: 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFT 95
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/311 (23%), Positives = 122/311 (39%), Gaps = 66/311 (21%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
GHS +VYS+ +P + + + D + W I+ H V AF+ +G
Sbjct: 62 LQGHSGKVYSLDWTP-EKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG 120
Query: 120 QLLASGGLDGLVQIWDPSS-----GNLKCTL-----EGPGGGVEWV-------------- 155
Q +A GGLD I++ SS GN+ + +G ++V
Sbjct: 121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQ 180
Query: 156 -----------------SWHPRGH---------------IVLAGSEDSTVWMWNAD-RAA 182
S P GH + ++GS D+TV +W+ +
Sbjct: 181 TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR 240
Query: 183 YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEG---- 238
+ + GH + F PDG+ TGSDD T R+++ ++G + V P +
Sbjct: 241 AVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPI 300
Query: 239 LTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL----VSHTDSIECIGFSRSSPWAA 294
+T + S L +G +G ++ + ++V +L SH I C+G S
Sbjct: 301 VTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALC 360
Query: 295 TGSMDQKLIIW 305
TGS D+ L IW
Sbjct: 361 TGSWDKNLKIW 371
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 73/314 (23%), Positives = 136/314 (43%), Gaps = 26/314 (8%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
+QGH V SL ++ + + S DG + +W+ + ++ V ++ P G
Sbjct: 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQ 121
Query: 163 IVLAGSEDSTVWMWN----ADRAAYL---NMFSGHGSSVTCGDFTPDGKT-ICTGSDDAT 214
V G DS ++N ADR + + +GH + + PD +T + TGS D T
Sbjct: 122 SVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQT 181
Query: 215 LRVWNPKSGENIHVIRGHPY---HTEGLTCLTI-SADSTLALSGSKDGSVHMVNI-TTGK 269
+W+ +G+ I + G + HT + L+I S ++ + +SGS D +V + ++ T +
Sbjct: 182 CVLWDVTTGQRISIF-GSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR 240
Query: 270 VVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQ--HSL------PRSTCDHEDG 321
V + H I + F TGS D ++D++ H L P +
Sbjct: 241 AVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPI 300
Query: 322 VTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTF----SGHRDAIQAISVSAHQDFLV 377
VT + + + + + G +G VWD+L + V + H I + +S+ L
Sbjct: 301 VTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALC 360
Query: 378 SVSLDGTARVFEIA 391
+ S D +++ +
Sbjct: 361 TGSWDKNLKIWAFS 374
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 105/234 (44%), Gaps = 17/234 (7%)
Query: 144 TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG 203
TL+G G V + W P + +++ S+D + +WNA + + H V F P+G
Sbjct: 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG 120
Query: 204 KTICTGSDDATLRVWNPKSGENI-------HVIRGHPYHTEGLTCLTISADSTLALSGSK 256
+++ G D+ ++N S + V+ GH + +C + T ++GS
Sbjct: 121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYAS--SCQYVPDQETRLITGSG 178
Query: 257 DGSVHMVNITTGKVVSSLVS-----HTDSIECIGF-SRSSPWAATGSMDQKLIIWDLQ-- 308
D + + ++TTG+ +S S HT + + S ++ +GS D + +WDL+
Sbjct: 179 DQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT 238
Query: 309 HSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRD 362
R+ HE + + + + TG DG R++D +G ++ ++ D
Sbjct: 239 SRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPD 292
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 83/174 (47%), Gaps = 16/174 (9%)
Query: 61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFW-------RINQGDWASEIQGHKDSVSSL 113
+ H + SVA P +L+A G D W R + D + I+GH++ V +
Sbjct: 55 TAHKKAIRSVAWRPH-TSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGV 113
Query: 114 AFSMDGQLLASGGLDGLVQIW--DPSSGNLKC--TLEGPGGGVEWVSWHPRGHIVLAGSE 169
A+S DG LA+ D V IW D S +C L+ V+ V WHP ++ + S
Sbjct: 114 AWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSY 173
Query: 170 DSTVWMWNA--DRAAYLNMFSGHGSSVTCGDF--TPDGKTICTGSDDATLRVWN 219
D TV +W D + + +GH +V DF T +C+GSDD+T+RVW
Sbjct: 174 DDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWK 227
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 13/142 (9%)
Query: 105 GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG-------NLKCTLEGPGGGVEWVSW 157
HK ++ S+A+ LLA+G D V IW +L +EG V+ V+W
Sbjct: 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAW 115
Query: 158 HPRGHIVLAGSEDSTVWMWNADRAAY----LNMFSGHGSSVTCGDFTPDGKTICTGSDDA 213
G+ + S D +VW+W D + +++ H V + P + + S D
Sbjct: 116 SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDD 175
Query: 214 TLRVWNPKSG--ENIHVIRGHP 233
T+R+W E + V+ GH
Sbjct: 176 TVRIWKDYDDDWECVAVLNGHE 197
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 72/184 (39%), Gaps = 18/184 (9%)
Query: 225 NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV----VSSLVSHTDS 280
+I++I+ + E + S + +GS D + +V++ V +H +
Sbjct: 3 SINLIKSLKLYKEKIWSFDFS--QGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKA 60
Query: 281 IECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRS--------TCDHEDGVTCLMWLGTSK 332
I + + + A GS D + IW + S R+ HE+ V + W
Sbjct: 61 IRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY 120
Query: 333 YVVTGCVDGKVRVWDSLSG----DCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVF 388
Y+ T D V +W++ +C+ H ++ + + L S S D T R++
Sbjct: 121 YLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIW 180
Query: 389 EIAD 392
+ D
Sbjct: 181 KDYD 184
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/201 (19%), Positives = 82/201 (40%), Gaps = 17/201 (8%)
Query: 206 ICTGSDDATLRVWNPKSGENIHV-IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMV- 263
+ TGS D +++ + K + + + H + + + ++L +GS D +V +
Sbjct: 27 LATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWA 86
Query: 264 ------NITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTC- 316
+++ + H + ++ + +S + AT S D+ + IW+ S C
Sbjct: 87 KEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECI 146
Query: 317 ----DHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGD--CVRTFSGHRDAIQAISVS 370
+H V ++W + + + D VR+W D CV +GH + +
Sbjct: 147 SVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFD 206
Query: 371 AHQDF--LVSVSLDGTARVFE 389
+ L S S D T RV++
Sbjct: 207 KTEGVFRLCSGSDDSTVRVWK 227
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 77/194 (39%), Gaps = 52/194 (26%)
Query: 78 TLVATGGGDDKGFFWRINQGDWASEI---QGHKDSVSSLAFSMDGQLLASGGLDGLVQIW 134
TL+A+ GGD + W W + +GH+ +V +A+S G LAS D IW
Sbjct: 29 TLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIW 88
Query: 135 DPSSGNLKC--TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR------------ 180
+ + +C TLEG V+ V+W P G+++ S D +VW+W D
Sbjct: 89 KKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNS 148
Query: 181 -------------------AAY----------------LNMFSGHGSSVTCGDFTPDGKT 205
A+Y GH S+V F P G+
Sbjct: 149 HTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQR 208
Query: 206 ICTGSDDATLRVWN 219
+ + SDD T+R+W
Sbjct: 209 LASCSDDRTVRIWR 222
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 96/231 (41%), Gaps = 14/231 (6%)
Query: 102 EIQGHKDSVS-SLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT---LEGPGGGVEWVSW 157
+ H DS LA++ G LLAS G D ++IW + C EG V V+W
Sbjct: 10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAW 69
Query: 158 HPRGHIVLAGSEDST--VWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATL 215
P G+ + + S D+T +W N D + GH + V + P G + T S D ++
Sbjct: 70 SPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSV 129
Query: 216 RVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVV--SS 273
VW + + HT+ + + L S S D +V + V ++
Sbjct: 130 WVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCAT 189
Query: 274 LVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTC 324
L H ++ + F S A+ S D+ + IW + LP +E GV C
Sbjct: 190 LEGHESTVWSLAFDPSGQRLASCSDDRTVRIW--RQYLP----GNEQGVAC 234
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 13/156 (8%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD---WASEIQGHKDSVSSLAFS 116
GH +EV SVA +P+ L+AT D + W +++ D S + H V + +
Sbjct: 101 LEGHENEVKSVAWAPS-GNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWH 159
Query: 117 MDGQLLASGGLDGLVQIWDPSSGNLKC--TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174
+LLAS D V+++ + C TLEG V +++ P G + + S+D TV
Sbjct: 160 PSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVR 219
Query: 175 MWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS 210
+W G+ V C P K ICT S
Sbjct: 220 IWR-------QYLPGNEQGVACSGSDPSWKCICTLS 248
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 318 HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGD--CVRTFSGHRDAIQAISVSAHQDF 375
H+ V + W Y+ + D +W D CV T GH + +++++ + +
Sbjct: 60 HQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNL 119
Query: 376 LVSVSLDGTARVFEI 390
L + S D + V+E+
Sbjct: 120 LATCSRDKSVWVWEV 134
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 49 NTEQPDDS--THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD 98
+ +QP S H+ HS +V VA +P + L+A+ D + FW+ + +
Sbjct: 286 DPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 59/121 (48%), Gaps = 6/121 (4%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162
+QGH V LA+ DG LASGG D +VQIWD S K T V+ V+W P
Sbjct: 213 LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQS 272
Query: 163 IVLA---GSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICT--GSDDATLRV 217
+LA G+ D + WNA A +N GS VT ++P K I + G D L +
Sbjct: 273 NLLATGGGTMDKQIHFWNAATGARVNTVDA-GSQVTSLIWSPHSKEIMSTHGFPDNNLSI 331
Query: 218 W 218
W
Sbjct: 332 W 332
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 103/251 (41%), Gaps = 7/251 (2%)
Query: 110 VSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE 169
V+S+ +S DG L+ G +GLV I+D S T+ G V +SW+ H++ +GS
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSR 194
Query: 170 DSTVWMWNADRAAY-LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHV 228
+ + A + + GH S V + DG + +G +D +++W+ +S
Sbjct: 195 SGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFT 254
Query: 229 IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSR 288
H + + ++ G+ D +H N TG V+++ + + I
Sbjct: 255 KTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPH 314
Query: 289 SSPWAAT-GSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTS---KYVVTGCVDGKVR 344
S +T G D L IW S D T +++ S + + T D ++
Sbjct: 315 SKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLK 374
Query: 345 VWDSLSGDCVR 355
W GD V+
Sbjct: 375 FWRVYDGDHVK 385
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 70/188 (37%), Gaps = 47/188 (25%)
Query: 61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ 120
+ H+ V +VA P + L+ATGGG +MD Q
Sbjct: 256 TNHNAAVKAVAWCPWQSNLLATGGG------------------------------TMDKQ 285
Query: 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLA--GSEDSTVWMWNA 178
+ W+ ++G T++ G V + W P +++ G D+ + +W+
Sbjct: 286 ----------IHFWNAATGARVNTVDA-GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSY 334
Query: 179 DRAAYLNM--FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHT 236
+ H + V +PDG+ + T + D L+ W G+ HV R P
Sbjct: 335 SSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGD--HVKRPIPITK 392
Query: 237 EGLTCLTI 244
+ +TI
Sbjct: 393 TPSSSITI 400
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 110/311 (35%), Gaps = 77/311 (24%)
Query: 103 IQGHKDSVSSLAFSMDGQ--LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPR 160
++GH V+SLA S GQ LL S D + W K T + GV S+
Sbjct: 13 LEGHNGWVTSLATSA-GQPNLLLSASRDKTLISW-------KLTGDDQKFGVPVRSFKGH 64
Query: 161 GHIV------------LAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICT 208
HIV L+ S D T+ +W+ F GH S V D I +
Sbjct: 65 SHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIIS 124
Query: 209 GSDDATLRVWNPKSGENIHVIRGH----------PY------------------------ 234
GS D T++VW K G+ + + GH P
Sbjct: 125 GSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNL 183
Query: 235 -----------HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIEC 283
H + LT S D TL S KDG + + N+ K +L S D +
Sbjct: 184 NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTL-SAQDEVFS 242
Query: 284 IGFSRSSPWAATG--------SMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVV 335
+ FS + W A S+D + ++ DL+ + E L W + +
Sbjct: 243 LAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLF 302
Query: 336 TGCVDGKVRVW 346
G D +RVW
Sbjct: 303 AGYTDNVIRVW 313
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 83/200 (41%), Gaps = 14/200 (7%)
Query: 206 ICTGSDDATLRVW-----NPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260
+ + S D TL W + K G + +GH + + C T++AD ALS S D ++
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD--C-TLTADGAYALSASWDKTL 89
Query: 261 HMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHED 320
+ ++ TG+ V H + + + + +GS D+ + +W ++ + H D
Sbjct: 90 RLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLATLLGHND 149
Query: 321 GVTCLMWLGTSKY------VVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQD 374
V+ + + K +++ D V+ W+ F GH I ++ S
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGT 209
Query: 375 FLVSVSLDGTARVFEIADFK 394
+ S DG ++ +A K
Sbjct: 210 LIASAGKDGEIXLWNLAAKK 229
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 15/171 (8%)
Query: 62 GHSDEVYSVACSPT-----DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFS 116
GH+D V V P D+ + + G D W +NQ ++ GH ++++L S
Sbjct: 146 GHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTAS 205
Query: 117 MDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMW 176
DG L+AS G DG + +W+ ++ TL V +++ P + LA + + + ++
Sbjct: 206 PDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQ-DEVFSLAFSPNRYW-LAAATATGIKVF 263
Query: 177 NADRAAYLN----MFSGHGSS----VTCGDFTPDGKTICTGSDDATLRVWN 219
+ D ++ F+G+ + ++ DG+T+ G D +RVW
Sbjct: 264 SLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 9/129 (6%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG 119
F GH+ + ++ SP D TL+A+ G D + W + A +D V SLAFS +
Sbjct: 192 FIGHNSNINTLTASP-DGTLIASAGKDGEIXLWNLAAKK-AXYTLSAQDEVFSLAFSPNR 249
Query: 120 QLLASGGLDGL-VQIWDPSS--GNLKCTLEGPGGGVE----WVSWHPRGHIVLAGSEDST 172
LA+ G+ V DP +L+ G E ++W G + AG D+
Sbjct: 250 YWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNV 309
Query: 173 VWMWNADRA 181
+ +W A
Sbjct: 310 IRVWQVXTA 318
Score = 34.7 bits (78), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 65 DEVYSVACSPTDATLVATGGGDDKGFFW--RINQGDWASEIQGHKDSVS----SLAFSMD 118
DEV+S+A SP L A K F + D E G+ + SLA+S D
Sbjct: 238 DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD 297
Query: 119 GQLLASGGLDGLVQIWDPSSGN 140
GQ L +G D ++++W + N
Sbjct: 298 GQTLFAGYTDNVIRVWQVXTAN 319
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 72/326 (22%), Positives = 118/326 (36%), Gaps = 43/326 (13%)
Query: 59 IFSGHSDEVYSVAC-----SPTDATLVATGGGDDKGFFWRINQ-------GDWASEIQGH 106
I GHSD V S+ D+ ++ +G D W++ + G + GH
Sbjct: 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGH 75
Query: 107 KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLA 166
VS LA S + S D +++WD +G G V V++ P +L+
Sbjct: 76 NHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILS 135
Query: 167 GSEDSTVWMWNADRAAYLNMF--SGHGSSVTCGDFTPDGKT----------ICTGSDDAT 214
+ + +WN + H V+C ++P K+ + D
Sbjct: 136 AGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGR 195
Query: 215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL 274
L+VWN N + H + L+IS + +G KD + + +I
Sbjct: 196 LKVWN----TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQRE 251
Query: 275 VSHTDSIECIGFSRSSPWAATGSMDQKLIIWDL--QHSLPRSTCDHE------------D 320
+I I F+ W A G+ DQ + I++L Q P T + E
Sbjct: 252 FDAGSTINQIAFNPKLQWVAVGT-DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNP 310
Query: 321 GVTCLMWLGTSKYVVTGCVDGKVRVW 346
T L W K + G DG +R +
Sbjct: 311 QCTSLAWNALGKKLFAGFTDGVIRTF 336
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 89/207 (42%), Gaps = 22/207 (10%)
Query: 163 IVLAGSEDSTVWMWN---ADRAAYLNM----FSGHGSSVTCGDFTPDGKTICTGSDDATL 215
++++GS D TV +W ++ Y + +GH V+ + + + S D TL
Sbjct: 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTL 100
Query: 216 RVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV 275
R+W+ ++G GH + + S D+ LS + + + NI SS
Sbjct: 101 RLWDLRTGTTYKRFVGH---QSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAE 157
Query: 276 --SHTDSIECIGFSR----------SSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVT 323
+H+D + C+ +S +P+ A+ D +L +W+ + + HE V
Sbjct: 158 KENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVN 217
Query: 324 CLMWLGTSKYVVTGCVDGKVRVWDSLS 350
L KY+ TG D K+ +WD L+
Sbjct: 218 HLSISPNGKYIATGGKDKKLLIWDILN 244
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 14/131 (10%)
Query: 274 LVSHTDSIECI--GFSRS----SPWAATGSMDQKLIIWDLQHS-------LP-RSTCDHE 319
L H+D + I GFS+ SP +GS D+ ++IW L +P ++ H
Sbjct: 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN 76
Query: 320 DGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSV 379
V+ L + + ++ D +R+WD +G + F GH+ + +++ S ++S
Sbjct: 77 HFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSA 136
Query: 380 SLDGTARVFEI 390
+ +++ I
Sbjct: 137 GAEREIKLWNI 147
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 88/205 (42%), Gaps = 21/205 (10%)
Query: 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLA-GSEDSTVWMWNAD 179
L+A G VQ+ D SG+ L+G + VSW PR +LA S DS V +W+
Sbjct: 158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217
Query: 180 RA----------------AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG 223
RA A + + H V FT DG + T D +R+WN +G
Sbjct: 218 RASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG 277
Query: 224 ENIHVIRGHPYHT--EGLTCLTISADSTLALSGSKDGS-VHMVNITTGKVVSSLVSHTDS 280
EN V G + +GL T+S + GS + + + +G+ ++ L H +
Sbjct: 278 ENTLVNYGKVCNNSKKGLK-FTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKT 336
Query: 281 IECIGFSRSSPWAATGSMDQKLIIW 305
++C F + +GS D ++ W
Sbjct: 337 VDCCVFQSNFQELYSGSRDCNILAW 361
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 78/192 (40%), Gaps = 23/192 (11%)
Query: 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ------------GDWASEIQ 104
+HI GH E+ +V+ SP ++AT D + W + + G + ++
Sbjct: 179 SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVE 238
Query: 105 ----GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG-----NLKCTLEGPGGGVEW- 154
H V+ L F+ DG L + G D +++W+ S+G N G+++
Sbjct: 239 SANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFT 298
Query: 155 VSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT 214
VS V ST+ ++ + M GH +V C F + + + +GS D
Sbjct: 299 VSCGCSSEFVFV-PYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCN 357
Query: 215 LRVWNPKSGENI 226
+ W P E +
Sbjct: 358 ILAWVPSLYEPV 369
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 73/175 (41%), Gaps = 19/175 (10%)
Query: 235 HTEGLTCLTIS-ADSTLALSGSKDGSVHMVNIT--------TGKVVSSLVS-----HTDS 280
H G+ L I + LSG DG + + ++ T K V S+ H S
Sbjct: 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101
Query: 281 IECIG-FSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCL-MWLGTSKY--VVT 336
+E + + + + S D+ L +WD + E+ V M ++K+ V
Sbjct: 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAV 161
Query: 337 GCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDF-LVSVSLDGTARVFEI 390
G KV++ D SG C GHR I A+S S D+ L + S D +++++
Sbjct: 162 GTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDV 216
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 47/258 (18%), Positives = 99/258 (38%), Gaps = 55/258 (21%)
Query: 117 MDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMW 176
++G+ + SGG DG++ ++D + + + S++ + G + V +
Sbjct: 54 VEGRYMLSGGSDGVIVLYDLENSSRQ-------------SYYTCKAVCSIGRDHPDVHRY 100
Query: 177 NADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRG----H 232
+ + + + D + S D TL+VW+ + + V +
Sbjct: 101 SVETVQW---------------YPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVY 145
Query: 233 PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS-RSSP 291
+H +S L G++ V + ++ +G L H I + +S R
Sbjct: 146 SHHMS-----PVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDY 200
Query: 292 WAATGSMDQKLIIWDL-----------QHSLPRSTC------DHEDGVTCLMWLGTSKYV 334
AT S D ++ +WD+ QH+ +S H V L + ++
Sbjct: 201 ILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHL 260
Query: 335 VTGCVDGKVRVWDSLSGD 352
+T D ++R+W+S +G+
Sbjct: 261 LTVGTDNRMRLWNSSNGE 278
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 92/218 (42%), Gaps = 51/218 (23%)
Query: 103 IQGHKDSVSSLAFSM-DGQLLASGGLDGLVQIWDPSSGNLKC-------TLEGPGGGVEW 154
+ GH V +A+ + ++ASG D V +W+ G L TLEG V
Sbjct: 77 VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGI 136
Query: 155 VSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSG--HGSSVTCGDFTPDGKTICTGSD 211
V+WHP ++L+ D+ + +W+ A + H ++ D++ DG ICT
Sbjct: 137 VAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR 196
Query: 212 DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVV 271
D +RV P+ G T+ A+ G++ VH V ++ GK++
Sbjct: 197 DKRVRVIEPRKG-------------------TVVAEKDRPHEGTR--PVHAVFVSEGKIL 235
Query: 272 SSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQH 309
++ GFSR S ++++ +WD +H
Sbjct: 236 TT-----------GFSRMS--------ERQVALWDTKH 254
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG--HKDSVSSLAFSM 117
GH+ V VA PT ++ + G D+ W + G + H D++ S+ +S
Sbjct: 127 LEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR 186
Query: 118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWV 155
DG L+ + D V++ +P G + + P G V
Sbjct: 187 DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPV 224
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 92/218 (42%), Gaps = 51/218 (23%)
Query: 103 IQGHKDSVSSLAF-SMDGQLLASGGLDGLVQIWDPSSGNLKC-------TLEGPGGGVEW 154
+ GH V +A+ + ++ASG D V +W+ G L TLEG V
Sbjct: 77 VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGI 136
Query: 155 VSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSG--HGSSVTCGDFTPDGKTICTGSD 211
V+WHP ++L+ D+ + +W+ A + H ++ D++ DG ICT
Sbjct: 137 VAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR 196
Query: 212 DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVV 271
D +RV P+ G T+ A+ G++ VH V ++ GK++
Sbjct: 197 DKRVRVIEPRKG-------------------TVVAEKDRPHEGTR--PVHAVFVSEGKIL 235
Query: 272 SSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQH 309
++ GFSR S ++++ +WD +H
Sbjct: 236 TT-----------GFSRMS--------ERQVALWDTKH 254
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG--HKDSVSSLAFSM 117
GH+ V VA PT ++ + G D+ W + G + H D++ S+ +S
Sbjct: 127 LEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR 186
Query: 118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWV 155
DG L+ + D V++ +P G + + P G V
Sbjct: 187 DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPV 224
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 78/170 (45%), Gaps = 15/170 (8%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN-----LKCTLEGPGGGVEWVSW 157
+ GH V L ++ DG+ LASGG D LV +W + G L+ T G V+ V+W
Sbjct: 146 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ-TFTQHQGAVKAVAW 204
Query: 158 HPRGHIVLA---GSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA- 213
P VLA G+ D + +WN A L+ H S V ++P K + +G A
Sbjct: 205 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQ 263
Query: 214 -TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM 262
L +W + + ++G HT + LT+S D S + D ++ +
Sbjct: 264 NQLVIWKYPTMAKVAELKG---HTSRVLSLTMSPDGATVASAAADETLRL 310
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/289 (19%), Positives = 120/289 (41%), Gaps = 22/289 (7%)
Query: 119 GQLLASGGLDGLVQIWDPSSGNLK--CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMW 176
G +LA LD V +W SSG++ +E PG + V+W G+ + G+ + V +W
Sbjct: 36 GNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLW 94
Query: 177 NADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHT 236
+ + L + H + V G + + + +GS + + + E H + H+
Sbjct: 95 DVQQQKRLRNMTSHSARV--GSLSWNSYILSSGSRSGHIHHHDVRVAE--HHVATLSGHS 150
Query: 237 EGLTCLTISADSTLALSGSKDGSVHMVNITTGK----VVSSLVSHTDSIECIGFSRSSPW 292
+ + L + D SG D V++ G+ + + H +++ + + PW
Sbjct: 151 QEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW---CPW 207
Query: 293 AAT------GSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVT--GCVDGKVR 344
+ G+ D+ + IW++ S D V ++W K +++ G ++
Sbjct: 208 QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLV 267
Query: 345 VWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADF 393
+W + V GH + ++++S + S + D T R++ +
Sbjct: 268 IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 13/170 (7%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFW--RINQGDWA--SEIQGHKDSVSSLAF 115
SGHS EV + +P D +A+GG D+ W +G W H+ +V ++A+
Sbjct: 146 LSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 204
Query: 116 -SMDGQLLASGG--LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAG---SE 169
+LA+GG D ++IW+ SG ++ + W P +++G ++
Sbjct: 205 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCS-ILWSPHYKELISGHGFAQ 263
Query: 170 DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219
+ V +W A + GH S V +PDG T+ + + D TLR+W
Sbjct: 264 NQLV-IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 76/169 (44%), Gaps = 13/169 (7%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN----LKCTLEGPGGGVEWVSWH 158
+ GH V L ++ DG+ LASGG D LV +W + G T G V+ V+W
Sbjct: 226 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 285
Query: 159 PRGHIVLA---GSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA-- 213
P VLA G+ D + +WN A L+ H S V ++P K + +G A
Sbjct: 286 PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQN 344
Query: 214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM 262
L +W + + ++G HT + LT+S D S + D ++ +
Sbjct: 345 QLVIWKYPTMAKVAELKG---HTSRVLSLTMSPDGATVASAAADETLRL 390
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/289 (19%), Positives = 120/289 (41%), Gaps = 22/289 (7%)
Query: 119 GQLLASGGLDGLVQIWDPSSGNLK--CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMW 176
G +LA LD V +W SSG++ +E PG + V+W G+ + G+ + V +W
Sbjct: 116 GNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLW 174
Query: 177 NADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHT 236
+ + L + H + V G + + + +GS + + + E H + H+
Sbjct: 175 DVQQQKRLRNMTSHSARV--GSLSWNSYILSSGSRSGHIHHHDVRVAE--HHVATLSGHS 230
Query: 237 EGLTCLTISADSTLALSGSKDGSVHMVNITTGK----VVSSLVSHTDSIECIGFSRSSPW 292
+ + L + D SG D V++ G+ + + H +++ + + PW
Sbjct: 231 QEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW---CPW 287
Query: 293 AAT------GSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVT--GCVDGKVR 344
+ G+ D+ + IW++ S D V ++W K +++ G ++
Sbjct: 288 QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLV 347
Query: 345 VWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADF 393
+W + V GH + ++++S + S + D T R++ +
Sbjct: 348 IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 396
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 13/170 (7%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFW--RINQGDWA--SEIQGHKDSVSSLAF 115
SGHS EV + +P D +A+GG D+ W +G W H+ +V ++A+
Sbjct: 226 LSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 284
Query: 116 -SMDGQLLASGG--LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAG---SE 169
+LA+GG D ++IW+ SG ++ V + W P +++G ++
Sbjct: 285 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA-HSQVCSILWSPHYKELISGHGFAQ 343
Query: 170 DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219
+ V +W A + GH S V +PDG T+ + + D TLR+W
Sbjct: 344 NQLV-IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 392
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/279 (20%), Positives = 106/279 (37%), Gaps = 11/279 (3%)
Query: 86 DDKGFFWRINQGDWASEIQGHK--DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC 143
D+ + W + GD +Q + + +SS+A+ +G LA G VQ+WD
Sbjct: 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183
Query: 144 TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-YLNMFSGHGSSVTCGDFTPD 202
+ V +SW+ +I+ +GS + + A ++ SGH V + PD
Sbjct: 184 NMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD 241
Query: 203 GKTICTGSDDATLRVWNPKSGEN----IHVIRGHPYHTEGLTCLTISADSTLALSGSKDG 258
G+ + +G +D + VW GE + H + + ++ G+ D
Sbjct: 242 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR 301
Query: 259 SVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPW-AATGSMDQKLIIWDLQHSLPRSTCD 317
+ + N+ +G +S++ +H+ + + G +L+IW +
Sbjct: 302 HIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK 361
Query: 318 -HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVR 355
H V L V + D +R+W D R
Sbjct: 362 GHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPAR 400
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 76/169 (44%), Gaps = 13/169 (7%)
Query: 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN----LKCTLEGPGGGVEWVSWH 158
+ GH V L ++ DG+ LASGG D LV +W + G T G V+ V+W
Sbjct: 237 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 296
Query: 159 PRGHIVLA---GSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA-- 213
P VLA G+ D + +WN A L+ H S V ++P K + +G A
Sbjct: 297 PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQN 355
Query: 214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM 262
L +W + + ++G HT + LT+S D S + D ++ +
Sbjct: 356 QLVIWKYPTMAKVAELKG---HTSRVLSLTMSPDGATVASAAADETLRL 401
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/289 (19%), Positives = 120/289 (41%), Gaps = 22/289 (7%)
Query: 119 GQLLASGGLDGLVQIWDPSSGNLK--CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMW 176
G +LA LD V +W SSG++ +E PG + V+W G+ + G+ + V +W
Sbjct: 127 GNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLW 185
Query: 177 NADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHT 236
+ + L + H + V G + + + +GS + + + E H + H+
Sbjct: 186 DVQQQKRLRNMTSHSARV--GSLSWNSYILSSGSRSGHIHHHDVRVAE--HHVATLSGHS 241
Query: 237 EGLTCLTISADSTLALSGSKDGSVHMVNITTGK----VVSSLVSHTDSIECIGFSRSSPW 292
+ + L + D SG D V++ G+ + + H +++ + + PW
Sbjct: 242 QEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW---CPW 298
Query: 293 AAT------GSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVT--GCVDGKVR 344
+ G+ D+ + IW++ S D V ++W K +++ G ++
Sbjct: 299 QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLV 358
Query: 345 VWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADF 393
+W + V GH + ++++S + S + D T R++ +
Sbjct: 359 IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 407
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 11/169 (6%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFW--RINQGDWA--SEIQGHKDSVSSLAF 115
SGHS EV + +P D +A+GG D+ W +G W H+ +V ++A+
Sbjct: 237 LSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 295
Query: 116 -SMDGQLLASGG--LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS--ED 170
+LA+GG D ++IW+ SG ++ V + W P +++G
Sbjct: 296 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA-HSQVCSILWSPHYKELISGHGFAQ 354
Query: 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219
+ + +W A + GH S V +PDG T+ + + D TLR+W
Sbjct: 355 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 403
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/279 (20%), Positives = 106/279 (37%), Gaps = 11/279 (3%)
Query: 86 DDKGFFWRINQGDWASEIQGHK--DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC 143
D+ + W + GD +Q + + +SS+A+ +G LA G VQ+WD
Sbjct: 135 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 194
Query: 144 TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-YLNMFSGHGSSVTCGDFTPD 202
+ V +SW+ +I+ +GS + + A ++ SGH V + PD
Sbjct: 195 NMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD 252
Query: 203 GKTICTGSDDATLRVWNPKSGEN----IHVIRGHPYHTEGLTCLTISADSTLALSGSKDG 258
G+ + +G +D + VW GE + H + + ++ G+ D
Sbjct: 253 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR 312
Query: 259 SVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPW-AATGSMDQKLIIWDLQHSLPRSTCD 317
+ + N+ +G +S++ +H+ + + G +L+IW +
Sbjct: 313 HIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK 372
Query: 318 -HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVR 355
H V L V + D +R+W D R
Sbjct: 373 GHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPAR 411
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 92/198 (46%), Gaps = 10/198 (5%)
Query: 204 KTICTGSDDATLRVWNPKSGENIHVIRGHPY-HTEGLTCLTISADSTLALSGSKDGSVHM 262
K I SD + +W E++ V + Y H + + L++ +D T A+SG KD SV +
Sbjct: 106 KGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKV 165
Query: 263 VNITTGKVVSSLVSHTDSIECIGF--SRSSPWAATGSMDQKLIIWDLQHSLPRSTCDH-- 318
+++ V+ S +H+ + C+ + + + + G D ++++WD + P + D
Sbjct: 166 WDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGE-DGRILLWDTRKPKPATRIDFCA 224
Query: 319 EDGVTCLMWLGTSKYVVTGCVD--GKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQD-F 375
D + + K C D G V + + + D +T + H I ++ S H F
Sbjct: 225 SDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPF 284
Query: 376 LVSVSLDGTARVFEIADF 393
L S+S D T V + ADF
Sbjct: 285 LASISEDCTVAVLD-ADF 301
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 78/193 (40%), Gaps = 28/193 (14%)
Query: 161 GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI-CTGSDDATLRVWN 219
G ++G +D +V +W+ + A L ++ H S V C P TI + +D + +W+
Sbjct: 151 GTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWD 210
Query: 220 ---PKSGENIHV---------IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT 267
PK I + HP + C G + G+V +VNI
Sbjct: 211 TRKPKPATRIDFCASDTIPTSVTWHPEKDDTFAC------------GDETGNVSLVNIKN 258
Query: 268 GKVVSSLVSHTDSIECIGFS-RSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLM 326
+ H+ +I + +S SSP+ A+ S D + + D S H D VT +
Sbjct: 259 PDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVA 318
Query: 327 W--LGTSKYVVTG 337
W L SK+ G
Sbjct: 319 WSPLDHSKFTTVG 331
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 100/218 (45%), Gaps = 28/218 (12%)
Query: 192 SSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLA 251
+ VTC ++ DG +I TG ++ LR+WN K+G ++V+ +H + + + D T
Sbjct: 109 NQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLN---FHRAPIVSVKWNKDGTHI 164
Query: 252 LSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS-RSSPWAATGSM--------DQKL 302
+S + + N+ +G V+ H + E G S + + GS+ D K
Sbjct: 165 ISMDVENVTILWNVISGTVMQ----HFELKETGGSSINAENHSGDGSLGVDVEWVDDDKF 220
Query: 303 II---------WDLQHSLPR-STCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGD 352
+I + + P H ++ L + T+K +++ DG +R+W +G+
Sbjct: 221 VIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGN 280
Query: 353 CVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEI 390
F GH +I + S D ++S S+DG+ R++ +
Sbjct: 281 SQNCFYGHSQSIVSASWVG-DDKVISCSMDGSVRLWSL 317
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/265 (20%), Positives = 112/265 (42%), Gaps = 25/265 (9%)
Query: 76 DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135
D + TG + + W G + + H+ + S+ ++ DG + S ++ + +W+
Sbjct: 119 DGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWN 177
Query: 136 PSSGNLK--CTLEGPGG--------------GVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179
SG + L+ GG GV+ V W V+ G + ++++
Sbjct: 178 VISGTVMQHFELKETGGSSINAENHSGDGSLGVD-VEWVDDDKFVIPGPK-GAIFVYQIT 235
Query: 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGL 239
GH ++ +F K + + SDD TLR+W+ +G + + G H++ +
Sbjct: 236 EKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYG---HSQSI 292
Query: 240 TCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMD 299
+ D + +S S DGSV + ++ +++ + I S+ A MD
Sbjct: 293 VSASWVGDDKV-ISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMD 351
Query: 300 QKLIIWDLQ--HSLPRSTCDHEDGV 322
++ ++DL+ +S RS + DG+
Sbjct: 352 GQVNVYDLKKLNSKSRSLYGNRDGI 376
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 78/340 (22%), Positives = 132/340 (38%), Gaps = 49/340 (14%)
Query: 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGD------WASEIQGH------------ 106
D + S +P D +++A G + RI + D W I
Sbjct: 46 DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSG 105
Query: 107 --KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRG-HI 163
+ V+ LA+S DG + +G +G +++W+ +G L L + V W+ G HI
Sbjct: 106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHI 164
Query: 164 VLAGSEDSTVWMWNADRAAYLNMFSGH---GSSVTCGDFTPDGK--TICTGSDDATLRVW 218
+ E+ T+ +WN + F GSS+ + + DG DD +
Sbjct: 165 ISMDVENVTI-LWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIP 223
Query: 219 NPKSGENIHVIRGHPY------HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVS 272
PK ++ I H ++ L + + L LS S DG++ + + G +
Sbjct: 224 GPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQN 283
Query: 273 SLVSHTDSIECIGFSRSSPWAA-----TGSMDQKLIIWDLQHS--LPRSTCDHEDGVTCL 325
H+ SI S+ W + SMD + +W L+ + L S D
Sbjct: 284 CFYGHSQSI------VSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGR 337
Query: 326 MWLGTSKYVVTGCVDGKVRVWDSLSGDCV-RTFSGHRDAI 364
+ KY V +DG+V V+D + R+ G+RD I
Sbjct: 338 ISQDGQKYAV-AFMDGQVNVYDLKKLNSKSRSLYGNRDGI 376
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/95 (17%), Positives = 40/95 (42%)
Query: 278 TDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTG 337
T+ + C+ +S TG + +L +W+ +L H + + W ++++
Sbjct: 108 TNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISM 167
Query: 338 CVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAH 372
V+ +W+ +SG ++ F +I+ H
Sbjct: 168 DVENVTILWNVISGTVMQHFELKETGGSSINAENH 202
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 101/228 (44%), Gaps = 10/228 (4%)
Query: 172 TVWMWNADRAAYLNMFSGHGSSVTCG--DFTPDG-KTICTGSDDATLRVWNPKSGENIHV 228
++W++ AA F G G D T G + I SD + +W E + V
Sbjct: 59 SLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWELDENETLIV 118
Query: 229 IRGHPY-HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS 287
+ Y H + ++ +++ + T A+SGSKD + + ++ V+SS +H + C+ S
Sbjct: 119 SKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAAS 178
Query: 288 -RSSPWAATGSMDQKLIIWDLQHSLPRST--CDHEDGV-TCLMW-LGTSKYVVTGCVDGK 342
+ S D ++++WD + P S C + T L W S+ V G +G
Sbjct: 179 PHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGT 238
Query: 343 VRVWDSLSGDCVRTFSGHRDAIQAISVSAHQ-DFLVSVSLDGTARVFE 389
V + D+ S CV + + H + + S H FL S+S D + V +
Sbjct: 239 VSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLD 286
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 76/181 (41%), Gaps = 26/181 (14%)
Query: 161 GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI-CTGSDDATLRVWN 219
G ++GS+D + +W+ + L+ + H + VTC +P ++ + S+D + +W+
Sbjct: 139 GTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWD 198
Query: 220 ---PKSGENIHV---------IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT 267
PK I + HP +E + + G ++G+V +V+ +
Sbjct: 199 TRCPKPASQIGCSAPGYLPTSLAWHPQQSE------------VFVFGDENGTVSLVDTKS 246
Query: 268 GKVVSSLVSHTDSIECIGFS-RSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLM 326
V S H+ + + FS S P+ A+ S D L + D S + H D V
Sbjct: 247 TSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDAT 306
Query: 327 W 327
W
Sbjct: 307 W 307
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP-RGHIV 164
H D VS+++ G SG D +++WD + + + V V+ P + +
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF 185
Query: 165 LAGSEDSTVWMWN 177
L+ SED+ + +W+
Sbjct: 186 LSCSEDNRILLWD 198
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 82/195 (42%), Gaps = 23/195 (11%)
Query: 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-----GDWASEIQGHK-- 107
+S FS HS V +V + ++A+GG + + F W +N+ ++ G
Sbjct: 104 NSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMS 163
Query: 108 --DSVSSLAFSMD-GQLLASGGLDGLVQIWDPSSGN--LKCTLEGPGGGVEW----VSWH 158
D V SLA++ + AS G IWD + + + P G++ V WH
Sbjct: 164 SVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWH 223
Query: 159 PRGHIVLAGS----EDSTVWMWNADRA--AYLNMFSGHGSSVTCGDFT-PDGKTICTGSD 211
P+ +A + D ++ +W+ A + GH + D+ D + +
Sbjct: 224 PKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGR 283
Query: 212 DATLRVWNPKSGENI 226
D T+ +WNP+S E +
Sbjct: 284 DNTVLLWNPESAEQL 298
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 75/182 (41%), Gaps = 19/182 (10%)
Query: 50 TEQPDDSTHIFSGHS----DEVYSVACSPTDATLVATGGGDDKGFFWRINQGD------W 99
TE P + T + G S DEV S+A + + A + A+ G + W + +
Sbjct: 147 TESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSY 206
Query: 100 ASEIQGHKDSVSSLAFSMDGQLLASGGL----DGLVQIWDPSSGN--LKCTLEGPGGGVE 153
S G K +S + + + D + IWD + N L+ +G G+
Sbjct: 207 TSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGIL 266
Query: 154 WVSW-HPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI--CTGS 210
+ W H H++L+ D+TV +WN + A L+ F G+ F P+ + C
Sbjct: 267 SLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASF 326
Query: 211 DD 212
D+
Sbjct: 327 DN 328
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 83/194 (42%), Gaps = 23/194 (11%)
Query: 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI---NQGDWASEIQGHKDSVS 111
D+ +IF+GH+ V VA +L + D K W N + + H V+
Sbjct: 222 DAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281
Query: 112 SLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKC-TLEGPGGGVEWVSWHPRGHIVLAGS- 168
L+F+ + +LA+G D V +WD + LK + E + V W P +LA S
Sbjct: 282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG 341
Query: 169 EDSTVWMWNADR--------------AAYLNMFSGHGSSVTCGDFTPDGK-TICTGSDDA 213
D + +W+ + L + GH + ++ + P+ IC+ S+D
Sbjct: 342 TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN 401
Query: 214 TLRVWNPKSGENIH 227
++VW + EN++
Sbjct: 402 IMQVW--QMAENVY 413
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 65/152 (42%), Gaps = 20/152 (13%)
Query: 49 NTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI-NQGDWASEIQGHK 107
NT +P +H H+ EV ++ +P ++ATG D W + N + HK
Sbjct: 265 NTSKP---SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK 321
Query: 108 DSVSSLAFSMDGQ-LLASGGLDGLVQIWDPSS-GNLKCTLEGPGGGVEWV---------- 155
D + + +S + +LAS G D + +WD S G + T + G E +
Sbjct: 322 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 381
Query: 156 ---SWHPRGH-IVLAGSEDSTVWMWNADRAAY 183
SW+P I+ + SED+ + +W Y
Sbjct: 382 SDFSWNPNEPWIICSVSEDNIMQVWQMAENVY 413
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 71/149 (47%), Gaps = 21/149 (14%)
Query: 264 NITTGKVVSSLVSHTDSIECIGFSRSSPW-AATGSMDQKLIIWDLQHSLPR--STCDHED 320
N T K ++ +HT + C+ F+ S + ATGS D+ + +WDL++ + S H+D
Sbjct: 263 NNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKD 322
Query: 321 GVTCLMWLGTSKYVVTGC-VDGKVRVWDSLSG---------------DCVRTFSGHRDAI 364
+ + W ++ ++ D ++ VWD LS + + GH I
Sbjct: 323 EIFQVQWSPHNETILASSGTDRRLHVWD-LSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 381
Query: 365 QAISVSAHQDFLV-SVSLDGTARVFEIAD 392
S + ++ +++ SVS D +V+++A+
Sbjct: 382 SDFSWNPNEPWIICSVSEDNIMQVWQMAE 410
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 83/194 (42%), Gaps = 23/194 (11%)
Query: 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFW--RINQGDWASE-IQGHKDSVS 111
D+ IF+GHS V VA +L + D K W R N S + H V+
Sbjct: 220 DAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVN 279
Query: 112 SLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKC-TLEGPGGGVEWVSWHPRGHIVLAGS- 168
L+F+ + +LA+G D V +WD + LK T E + V W P +LA S
Sbjct: 280 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSG 339
Query: 169 EDSTVWMWNADR--------------AAYLNMFSGHGSSVTCGDFTPDGK-TICTGSDDA 213
D + +W+ + L + GH + ++ + P+ IC+ S+D
Sbjct: 340 TDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 399
Query: 214 TLRVWNPKSGENIH 227
+++W + ENI+
Sbjct: 400 IMQIW--QMAENIY 411
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 71/147 (48%), Gaps = 21/147 (14%)
Query: 266 TTGKVVSSLVSHTDSIECIGFSRSSPW-AATGSMDQKLIIWDLQH-SLPRSTCD-HEDGV 322
TT K + +HT + C+ F+ S + ATGS D+ + +WDL++ L T + H+D +
Sbjct: 263 TTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEI 322
Query: 323 TCLMWLGTSKYVVTGC-VDGKVRVWDSLSG---------------DCVRTFSGHRDAIQA 366
+ W ++ ++ D ++ VWD LS + + GH I
Sbjct: 323 FQVHWSPHNETILASSGTDRRLNVWD-LSKIGEEQSAEDAEDGPPELLFIHGGHTAKISD 381
Query: 367 ISVSAHQDFLV-SVSLDGTARVFEIAD 392
S + ++ +++ SVS D +++++A+
Sbjct: 382 FSWNPNEPWVICSVSEDNIMQIWQMAE 408
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 84/194 (43%), Gaps = 23/194 (11%)
Query: 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFW--RINQGDWASE-IQGHKDSVS 111
D+ +IF+GH+ V VA +L + D K W R N S + H V+
Sbjct: 224 DAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 283
Query: 112 SLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKC-TLEGPGGGVEWVSWHPRGHIVLAGS- 168
L+F+ + +LA+G D V +WD + LK + E + V W P +LA S
Sbjct: 284 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG 343
Query: 169 EDSTVWMWNADR--------------AAYLNMFSGHGSSVTCGDFTPDGK-TICTGSDDA 213
D + +W+ + L + GH + ++ + P+ IC+ S+D
Sbjct: 344 TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN 403
Query: 214 TLRVWNPKSGENIH 227
++VW + EN++
Sbjct: 404 IMQVW--QMAENVY 415
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 65/152 (42%), Gaps = 20/152 (13%)
Query: 49 NTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI-NQGDWASEIQGHK 107
NT +P +H H+ EV ++ +P ++ATG D W + N + HK
Sbjct: 267 NTSKP---SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK 323
Query: 108 DSVSSLAFSMDGQ-LLASGGLDGLVQIWDPSS-GNLKCTLEGPGGGVEWV---------- 155
D + + +S + +LAS G D + +WD S G + T + G E +
Sbjct: 324 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 383
Query: 156 ---SWHPRGH-IVLAGSEDSTVWMWNADRAAY 183
SW+P I+ + SED+ + +W Y
Sbjct: 384 SDFSWNPNEPWIICSVSEDNIMQVWQMAENVY 415
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 71/149 (47%), Gaps = 21/149 (14%)
Query: 264 NITTGKVVSSLVSHTDSIECIGFSRSSPW-AATGSMDQKLIIWDLQHSLPR--STCDHED 320
N T K ++ +HT + C+ F+ S + ATGS D+ + +WDL++ + S H+D
Sbjct: 265 NNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKD 324
Query: 321 GVTCLMWLGTSKYVVTGC-VDGKVRVWDSLSG---------------DCVRTFSGHRDAI 364
+ + W ++ ++ D ++ VWD LS + + GH I
Sbjct: 325 EIFQVQWSPHNETILASSGTDRRLHVWD-LSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 383
Query: 365 QAISVSAHQDFLV-SVSLDGTARVFEIAD 392
S + ++ +++ SVS D +V+++A+
Sbjct: 384 SDFSWNPNEPWIICSVSEDNIMQVWQMAE 412
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 83/194 (42%), Gaps = 23/194 (11%)
Query: 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI---NQGDWASEIQGHKDSVS 111
D+ +IF+GH+ V VA +L + D K W N + + H V+
Sbjct: 226 DAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 285
Query: 112 SLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKC-TLEGPGGGVEWVSWHPRGHIVLAGS- 168
L+F+ + +LA+G D V +WD + LK + E + V W P +LA S
Sbjct: 286 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG 345
Query: 169 EDSTVWMWNADR--------------AAYLNMFSGHGSSVTCGDFTPDGK-TICTGSDDA 213
D + +W+ + L + GH + ++ + P+ IC+ S+D
Sbjct: 346 TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN 405
Query: 214 TLRVWNPKSGENIH 227
++VW + EN++
Sbjct: 406 IMQVW--QMAENVY 417
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 65/152 (42%), Gaps = 20/152 (13%)
Query: 49 NTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI-NQGDWASEIQGHK 107
NT +P +H H+ EV ++ +P ++ATG D W + N + HK
Sbjct: 269 NTSKP---SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK 325
Query: 108 DSVSSLAFSMDGQ-LLASGGLDGLVQIWDPSS-GNLKCTLEGPGGGVEWV---------- 155
D + + +S + +LAS G D + +WD S G + T + G E +
Sbjct: 326 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 385
Query: 156 ---SWHPRGH-IVLAGSEDSTVWMWNADRAAY 183
SW+P I+ + SED+ + +W Y
Sbjct: 386 SDFSWNPNEPWIICSVSEDNIMQVWQMAENVY 417
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 71/149 (47%), Gaps = 21/149 (14%)
Query: 264 NITTGKVVSSLVSHTDSIECIGFSRSSPW-AATGSMDQKLIIWDLQHSLPR--STCDHED 320
N T K ++ +HT + C+ F+ S + ATGS D+ + +WDL++ + S H+D
Sbjct: 267 NNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKD 326
Query: 321 GVTCLMWLGTSKYVVTGC-VDGKVRVWDSLSG---------------DCVRTFSGHRDAI 364
+ + W ++ ++ D ++ VWD LS + + GH I
Sbjct: 327 EIFQVQWSPHNETILASSGTDRRLHVWD-LSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 385
Query: 365 QAISVSAHQDFLV-SVSLDGTARVFEIAD 392
S + ++ +++ SVS D +V+++A+
Sbjct: 386 SDFSWNPNEPWIICSVSEDNIMQVWQMAE 414
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/244 (20%), Positives = 90/244 (36%), Gaps = 7/244 (2%)
Query: 108 DSVSSLAFSMDGQLLASGGLDGLVQIWD--PSSGNLKCTLEGPGGGVEWVSWHPRGHIVL 165
+ + S DG L GG + IWD + +K L ++ P +
Sbjct: 98 NYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCF 157
Query: 166 AGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN 225
+ D + +W+ + F GH +C D + DG + TG D T+R W+ + G
Sbjct: 158 SCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ 217
Query: 226 IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIG 285
+ + H + ++ + LA+ G + +V ++++ L H + +
Sbjct: 218 L---QQHDFTSQIFSLGYCPTGEWLAV-GMESSNVEVLHVNKPDKYQ-LHLHESCVLSLK 272
Query: 286 FSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRV 345
F+ W + D L W + V KY+VTG D K V
Sbjct: 273 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATV 332
Query: 346 WDSL 349
++ +
Sbjct: 333 YEVI 336
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 72/195 (36%), Gaps = 12/195 (6%)
Query: 158 HPRGHIVLAGSEDSTVW----MWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA 213
+P H+ G VW N + L+ + +C PDG T+ G + +
Sbjct: 61 NPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSC-KLLPDGCTLIVGGEAS 119
Query: 214 TLRVWN---PKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV 270
TL +W+ P + P L IS DS + S DG++ + ++ +
Sbjct: 120 TLSIWDLAAPTPRIKAELTSSAP----ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL 175
Query: 271 VSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGT 330
V HTD CI S TG +D + WDL+ D + L + T
Sbjct: 176 VRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPT 235
Query: 331 SKYVVTGCVDGKVRV 345
+++ G V V
Sbjct: 236 GEWLAVGMESSNVEV 250
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 77/198 (38%), Gaps = 7/198 (3%)
Query: 68 YSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL 127
Y++A SP D+ + + D W ++ + QGH D S + S DG L +GGL
Sbjct: 145 YALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL 203
Query: 128 DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF 187
D V+ WD G + + + + P G + G E S V + + ++ +
Sbjct: 204 DNTVRSWDLREGR-QLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH 262
Query: 188 SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD 247
H S V F GK + D L W G +I + + + IS D
Sbjct: 263 L-HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK----ESSSVLSCDISVD 317
Query: 248 STLALSGSKDGSVHMVNI 265
++GS D + +
Sbjct: 318 DKYIVTGSGDKKATVYEV 335
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 74/191 (38%), Gaps = 17/191 (8%)
Query: 212 DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT-TGKV 270
DA + P+ I+ + H E + +TIS + +G K G V + +I+ G
Sbjct: 31 DALIGPGIPRHARQINTLN----HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISHPGN- 84
Query: 271 VSSLVSHTDSIECIGFSRSSPWAA------TGSMDQKLIIWDLQHSLPRSTCDHEDGVTC 324
S VS D + + RS G L IWDL PR +
Sbjct: 85 -KSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPA 143
Query: 325 LMWLGTS---KYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSL 381
L S K + C DG + VWD + VR F GH D I +S L + L
Sbjct: 144 CYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL 203
Query: 382 DGTARVFEIAD 392
D T R +++ +
Sbjct: 204 DNTVRSWDLRE 214
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 4/104 (3%)
Query: 267 TGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQH-SLPRSTCDHEDGVTCL 325
T ++ + L S + + S S + D + +WDL + +L R H DG +C+
Sbjct: 130 TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCI 189
Query: 326 MWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISV 369
+ TG +D VR WD G R H Q S+
Sbjct: 190 DISNDGTKLWTGGLDNTVRSWDLREG---RQLQQHDFTSQIFSL 230
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/211 (19%), Positives = 78/211 (36%), Gaps = 14/211 (6%)
Query: 101 SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPR 160
+E+ + +LA S D ++ S DG + +WD + L +G G +
Sbjct: 135 AELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISND 194
Query: 161 GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP 220
G + G D+TV W+ L + G + P G+ + G + + + V
Sbjct: 195 GTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLG-YCPTGEWLAVGMESSNVEV--- 250
Query: 221 KSGENIHVIRGHPY----HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS 276
+HV + Y H + L + +S KD ++ G +
Sbjct: 251 -----LHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE 305
Query: 277 HTDSIECIGFSRSSPWAATGSMDQKLIIWDL 307
+ + C S + TGS D+K ++++
Sbjct: 306 SSSVLSC-DISVDDKYIVTGSGDKKATVYEV 335
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 82/194 (42%), Gaps = 23/194 (11%)
Query: 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFW--RINQGDWASE-IQGHKDSVS 111
D+ IF+GHS V VA +L + D K W R N S + H V+
Sbjct: 220 DAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVN 279
Query: 112 SLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKC-TLEGPGGGVEWVSWHPRGHIVLAGS- 168
L+F+ + +LA+G D V +WD + LK T E + V W P +LA S
Sbjct: 280 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSG 339
Query: 169 EDSTVWMWNADR--------------AAYLNMFSGHGSSVTCGDFTPDGK-TICTGSDDA 213
D + +W+ + L + GH + ++ + P+ IC+ S+D
Sbjct: 340 TDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 399
Query: 214 TLRVWNPKSGENIH 227
++W + ENI+
Sbjct: 400 IXQIW--QXAENIY 411
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 84/183 (45%), Gaps = 26/183 (14%)
Query: 229 IRGHPYHTEGLTCLTISADSTLA---LSGSKDGSVHMVNITTG----KVVSS---LVSHT 278
+RGH GL S +S L+ LS S D +V + +I G K+V + H+
Sbjct: 175 LRGHQKEGYGL-----SWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHS 229
Query: 279 DSIECIGFSRSSPWAATGSM--DQKLIIWDLQH---SLPRSTCD-HEDGVTCLMWLGTSK 332
+E + + + GS+ DQKL IWD + S P D H V CL + S+
Sbjct: 230 AVVEDVAWHLLHE-SLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSE 288
Query: 333 YVV-TGCVDGKVRVWDSLSGDC-VRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEI 390
+++ TG D V +WD + + TF H+D I + S H + +++ S GT R +
Sbjct: 289 FILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASS--GTDRRLNV 346
Query: 391 ADF 393
D
Sbjct: 347 WDL 349
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 82/194 (42%), Gaps = 23/194 (11%)
Query: 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI---NQGDWASEIQGHKDSVS 111
D+ IF+GH+ V V+ +L + D K W N + + H V+
Sbjct: 218 DAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVN 277
Query: 112 SLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKC-TLEGPGGGVEWVSWHPRGHIVLAGS- 168
L+F+ + +LA+G D V +WD + LK + E + V W P +LA S
Sbjct: 278 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG 337
Query: 169 EDSTVWMWNADR--------------AAYLNMFSGHGSSVTCGDFTPDGK-TICTGSDDA 213
D + +W+ + L + GH + ++ + P+ IC+ S+D
Sbjct: 338 TDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN 397
Query: 214 TLRVWNPKSGENIH 227
++VW + ENI+
Sbjct: 398 IMQVW--QMAENIY 409
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 89/188 (47%), Gaps = 15/188 (7%)
Query: 155 VSWHPR--GHIVLAGSEDSTVWMWNADRAAY-------LNMFSGHGSSVTCGDFTPDGKT 205
+SW+P GH+ L+ S+D T+ +W+ +F+GH + V + ++
Sbjct: 183 LSWNPNLSGHL-LSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHES 241
Query: 206 IC-TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL-SGSKDGSVHMV 263
+ + +DD L +W+ +S HT + CL+ + S L +GS D +V +
Sbjct: 242 LFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 301
Query: 264 NITTGKV-VSSLVSHTDSIECIGFS-RSSPWAATGSMDQKLIIWDLQH-SLPRSTCDHED 320
++ K+ + S SH D I + +S + A+ D++L +WDL +S D ED
Sbjct: 302 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAED 361
Query: 321 GVTCLMWL 328
G L+++
Sbjct: 362 GPPELLFI 369
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNAD 179
LLA G G+++I +P + G G + + +HPR +++L+ S+D + +WN
Sbjct: 82 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 141
Query: 180 RAAYLNMF---SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
+ +F GH V D+ G+ I + D +L++W S ++ I+
Sbjct: 142 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 195
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE---IQGHKDSVSSLAFS 116
+ GH + + + P D L+ + D W I + ++GH+D V S +
Sbjct: 106 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 165
Query: 117 MDGQLLASGGLDGLVQIWDPSSGNL 141
+ G+ + S G+D +++W +S +
Sbjct: 166 LLGEKIMSCGMDHSLKLWRINSKRM 190
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 8/76 (10%)
Query: 113 LAFSMD--GQLLASGGLDGLVQIWD---PSSGNLKCTL---EGPGGGVEWVSWHPRGHIV 164
+ FSMD ++LA G G + +WD KCT G + S+ I+
Sbjct: 286 MRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSIL 345
Query: 165 LAGSEDSTVWMWNADR 180
+A +D+++W W+ R
Sbjct: 346 IAVCDDASIWRWDRLR 361
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 341 GKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQ-DFLVSVSLDGTARVFEI 390
G +R+ + ++ C++ + GH +AI + + L+SVS D R++ I
Sbjct: 90 GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 140
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNAD 179
LLA G G+++I +P + G G + + +HPR +++L+ S+D + +WN
Sbjct: 87 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 146
Query: 180 RAAYLNMF---SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
+ +F GH V D+ G+ I + D +L++W S ++ I+
Sbjct: 147 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 200
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE---IQGHKDSVSSLAFS 116
+ GH + + + P D L+ + D W I + ++GH+D V S +
Sbjct: 111 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 170
Query: 117 MDGQLLASGGLDGLVQIWDPSSGNL 141
+ G+ + S G+D +++W +S +
Sbjct: 171 LLGEKIMSCGMDHSLKLWRINSKRM 195
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 8/76 (10%)
Query: 113 LAFSMD--GQLLASGGLDGLVQIWD---PSSGNLKCTL---EGPGGGVEWVSWHPRGHIV 164
+ FSMD ++LA G G + +WD KCT G + S+ I+
Sbjct: 291 MRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSIL 350
Query: 165 LAGSEDSTVWMWNADR 180
+A +D+++W W+ R
Sbjct: 351 IAVCDDASIWRWDRLR 366
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 341 GKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQ-DFLVSVSLDGTARVFEI 390
G +R+ + ++ C++ + GH +AI + + L+SVS D R++ I
Sbjct: 95 GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 145
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNAD 179
LLA G G+++I +P + G G + + +HPR +++L+ S+D + +WN
Sbjct: 86 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 145
Query: 180 RAAYLNMF---SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
+ +F GH V D+ G+ I + D +L++W S ++ I+
Sbjct: 146 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 199
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE---IQGHKDSVSSLAFS 116
+ GH + + + P D L+ + D W I + ++GH+D V S +
Sbjct: 110 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 169
Query: 117 MDGQLLASGGLDGLVQIWDPSSGNL 141
+ G+ + S G+D +++W +S +
Sbjct: 170 LLGEKIMSCGMDHSLKLWRINSKRM 194
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 8/76 (10%)
Query: 113 LAFSMD--GQLLASGGLDGLVQIWD---PSSGNLKCTL---EGPGGGVEWVSWHPRGHIV 164
+ FSMD ++LA G G + +WD KCT G + S+ I+
Sbjct: 290 MRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSIL 349
Query: 165 LAGSEDSTVWMWNADR 180
+A +D+++W W+ R
Sbjct: 350 IAVCDDASIWRWDRLR 365
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 341 GKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQ-DFLVSVSLDGTARVFEI 390
G +R+ + ++ C++ + GH +AI + + L+SVS D R++ I
Sbjct: 94 GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 144
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNAD 179
LLA G G+++I +P + G G + + +HPR +++L+ S+D + +WN
Sbjct: 86 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 145
Query: 180 RAAYLNMF---SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
+ +F GH V D+ G+ I + D +L++W S ++ I+
Sbjct: 146 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 199
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE---IQGHKDSVSSLAFS 116
+ GH + + + P D L+ + D W I + ++GH+D V S +
Sbjct: 110 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 169
Query: 117 MDGQLLASGGLDGLVQIWDPSSGNL 141
+ G+ + S G+D +++W +S +
Sbjct: 170 LLGEKIMSCGMDHSLKLWRINSKRM 194
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 341 GKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQ-DFLVSVSLDGTARVFEI 390
G +R+ + ++ C++ + GH +AI + + L+SVS D R++ I
Sbjct: 94 GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 144
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Query: 113 LAFSMD--GQLLASGGLDGLVQIWD---PSSGNLKCTL---EGPGGGVEWVSWHPRGHIV 164
+ FS D ++LA G G + +WD KCT G + S+ I+
Sbjct: 290 MRFSTDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSIL 349
Query: 165 LAGSEDSTVWMWNADR 180
+A +D+++W W+ R
Sbjct: 350 IAVCDDASIWRWDRLR 365
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNAD 179
LLA G G+++I +P + G G + + +HPR +++L+ S+D + +WN
Sbjct: 123 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 182
Query: 180 RAAYLNMF---SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230
+ +F GH V D+ G+ I + D +L++W S ++ I+
Sbjct: 183 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 236
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWAS---EIQGHKDSVSSLAFS 116
+ GH + + + P D L+ + D W I + ++GH+D V S +
Sbjct: 147 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 206
Query: 117 MDGQLLASGGLDGLVQIWDPSSGNL 141
+ G+ + S G+D +++W +S +
Sbjct: 207 LLGEKIMSCGMDHSLKLWRINSKRM 231
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 8/76 (10%)
Query: 113 LAFSMD--GQLLASGGLDGLVQIWD---PSSGNLKCTL---EGPGGGVEWVSWHPRGHIV 164
+ FSMD ++LA G G + +WD KCT G + S+ I+
Sbjct: 327 MRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSIL 386
Query: 165 LAGSEDSTVWMWNADR 180
+A +D+++W W+ R
Sbjct: 387 IAVCDDASIWRWDRLR 402
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 341 GKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQ-DFLVSVSLDGTARVFEI 390
G +R+ + ++ C++ + GH +AI + + L+SVS D R++ I
Sbjct: 131 GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 181
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 91/214 (42%), Gaps = 23/214 (10%)
Query: 155 VSWHP-RGHIVLAGSEDSTVWMWN---ADRAAYLNMFSGHGSSVTCGDFTP-DGKTICTG 209
++WHP V GS+ + +WN D+ ++ G G S+T F P +
Sbjct: 125 LAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGI-GAGGSITGLKFNPLNTNQFYAS 183
Query: 210 SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK 269
S + T R+ + K G + V L +SA S + ++G G+V ++N+ GK
Sbjct: 184 SMEGTTRLQDFK-GNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GK 241
Query: 270 VVSSLVSHTDSIECIGFSRSSPW-AATGSMDQKLIIWDLQ---------HSLPRSTCDHE 319
+ +L H + + + W AT S+DQ + IWDL+ +SLP H
Sbjct: 242 ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP-----HR 296
Query: 320 DGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDC 353
V + ++T ++RV+ + DC
Sbjct: 297 HPVNAACFSPDGARLLTTDQKSEIRVYSASQWDC 330
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 66/170 (38%), Gaps = 20/170 (11%)
Query: 63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ---GHKDSVSSLAFSMDG 119
H +V VA +P +AT D W + Q + H+ V++ FS DG
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTL---EGPGGGVEWVS-----WHPRGHIVLAGS-ED 170
L + ++++ S+ C L P + ++ WHPR ++++ G D
Sbjct: 309 ARLLTTDQKSEIRVY--SASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPD 366
Query: 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP 220
+++F G+ + C + P+ I ++L +NP
Sbjct: 367 PNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGI------SSLNEFNP 410
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 91/214 (42%), Gaps = 23/214 (10%)
Query: 155 VSWHP-RGHIVLAGSEDSTVWMWN---ADRAAYLNMFSGHGSSVTCGDFTP-DGKTICTG 209
++WHP V GS+ + +WN D+ ++ G G S+T F P +
Sbjct: 125 LAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGI-GAGGSITGLKFNPLNTNQFYAS 183
Query: 210 SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK 269
S + T R+ + K G + V L +SA S + ++G G+V ++N+ GK
Sbjct: 184 SMEGTTRLQDFK-GNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GK 241
Query: 270 VVSSLVSHTDSIECIGFSRSSPW-AATGSMDQKLIIWDLQ---------HSLPRSTCDHE 319
+ +L H + + + W AT S+DQ + IWDL+ +SLP H
Sbjct: 242 ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP-----HR 296
Query: 320 DGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDC 353
V + ++T ++RV+ + DC
Sbjct: 297 HPVNAACFSPDGARLLTTDQKSEIRVYSASQWDC 330
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 66/170 (38%), Gaps = 20/170 (11%)
Query: 63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ---GHKDSVSSLAFSMDG 119
H +V VA +P +AT D W + Q + H+ V++ FS DG
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTL---EGPGGGVEWVS-----WHPRGHIVLAGS-ED 170
L + ++++ S+ C L P + ++ WHPR ++++ G D
Sbjct: 309 ARLLTTDQKSEIRVY--SASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPD 366
Query: 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP 220
+++F G+ + C + P+ I ++L +NP
Sbjct: 367 PNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGI------SSLNEFNP 410
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 91/214 (42%), Gaps = 23/214 (10%)
Query: 155 VSWHP-RGHIVLAGSEDSTVWMWN---ADRAAYLNMFSGHGSSVTCGDFTP-DGKTICTG 209
++WHP V GS+ + +WN D+ ++ G G S+T F P +
Sbjct: 126 LAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGI-GAGGSITGLKFNPLNTNQFYAS 184
Query: 210 SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK 269
S + T R+ + K G + V L +SA S + ++G G+V ++N+ GK
Sbjct: 185 SMEGTTRLQDFK-GNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GK 242
Query: 270 VVSSLVSHTDSIECIGFSRSSPW-AATGSMDQKLIIWDLQ---------HSLPRSTCDHE 319
+ +L H + + + W AT S+DQ + IWDL+ +SLP H
Sbjct: 243 ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP-----HR 297
Query: 320 DGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDC 353
V + ++T ++RV+ + DC
Sbjct: 298 HPVNAACFSPDGARLLTTDQKSEIRVYSASQWDC 331
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 66/170 (38%), Gaps = 20/170 (11%)
Query: 63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ---GHKDSVSSLAFSMDG 119
H +V VA +P +AT D W + Q + H+ V++ FS DG
Sbjct: 250 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 309
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTL---EGPGGGVEWV-----SWHPRGHIVLAGS-ED 170
L + ++++ S+ C L P + + +WHPR ++++ G D
Sbjct: 310 ARLLTTDQKSEIRVY--SASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPD 367
Query: 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP 220
+++F G+ + C + P+ I ++L +NP
Sbjct: 368 PNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGI------SSLNEFNP 411
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 109/284 (38%), Gaps = 45/284 (15%)
Query: 129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMF 187
G V ++D +G L G + V + P R +++GS+D+TV ++ + + F
Sbjct: 129 GHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF 186
Query: 188 SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR----GHPYHTEGLTCLT 243
H V + PDG + D T+ ++N G V + H+ + LT
Sbjct: 187 GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLT 246
Query: 244 ISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKL- 302
S D T S S D ++ + N+ T KV ++ T IE DQ+L
Sbjct: 247 WSPDGTKIASASADKTIKIWNVATLKVEKTIPVGT-RIE----------------DQQLG 289
Query: 303 IIWDLQH------------------SLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVR 344
IIW Q S+ + H +T L K + + +G +
Sbjct: 290 IIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHIN 349
Query: 345 VWDSLSGDCVRTFSG-HRDAIQAISVSAHQDFLVSVSLDGTARV 387
WD +G R F H I I ++ D L +VS D +V
Sbjct: 350 SWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKV 392
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 9/161 (5%)
Query: 111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK--CTLEGPGGGVEWVSWHPRGHIVLAGS 168
S +A S D Q +A GG D V ++ S ++ T+ P + V++ G ++A
Sbjct: 452 SCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAE-ITSVAFSNNGAFLVATD 510
Query: 169 EDSTVWMW---NADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN-PKSGE 224
+ V + N A+ N ++ H + V C ++PD + TGS D ++ VWN K +
Sbjct: 511 QSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD 570
Query: 225 NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI 265
+ +I+G H I + T +S +D ++ N+
Sbjct: 571 HPIIIKG--AHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 609
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/293 (20%), Positives = 116/293 (39%), Gaps = 56/293 (19%)
Query: 105 GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG---------------NLKCTLEGPG 149
GH ++++L+ S DG+ L S +G + WD S+G +K T +G
Sbjct: 322 GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG-- 379
Query: 150 GGVEWVSWHPRGHIVLAGSE--DSTVWMWN-----------------ADRAAYLNM-FSG 189
+ VSW +V AG DS+ + N A A Y ++
Sbjct: 380 -DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYS 438
Query: 190 HGS--------SVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTC 241
HG + +C + D + + G D+ + V+ SG ++ ++ H +T
Sbjct: 439 HGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYK-LSGASVSEVKT-IVHPAEITS 496
Query: 242 LTISADSTLALSGSKDGSVHMVNITTGKVVS---SLVSHTDSIECIGFSRSSPWAATGSM 298
+ S + ++ + V ++ ++ S HT + C+ +S + ATGS+
Sbjct: 497 VAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL 556
Query: 299 DQKLIIWDLQ----HSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWD 347
D +I+W++ H + V ++WL + V G D ++ W+
Sbjct: 557 DNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQ-DSNIKFWN 608
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 51/120 (42%), Gaps = 6/120 (5%)
Query: 63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA--SEIQGHKDSVSSLAFSMDGQ 120
H E+ SVA S A LVAT + N + A + H V+ +++S D
Sbjct: 490 HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV 549
Query: 121 LLASGGLDGLVQIWD---PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177
LA+G LD V +W+ PS + V V W IV AG +DS + WN
Sbjct: 550 RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAG-QDSNIKFWN 608
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 3/116 (2%)
Query: 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVL 165
H D V LA DG ++ DGL+++ D +G++ T EG V + P G IV
Sbjct: 183 HNDVVRHLAVVDDGHFISCSN-DGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVS 241
Query: 166 AGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPK 221
G ED TV +W+ + + + + S+ D +G I GS D +R+++ +
Sbjct: 242 CG-EDRTVRIWSKENGSLKQVITLPAISIWSVDCXSNGDII-VGSSDNLVRIFSQE 295
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 82/171 (47%), Gaps = 15/171 (8%)
Query: 222 SGEN-IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDS 280
SGE+ ++ + GH +G C ++S + +SGS D + + G +V +L +H S
Sbjct: 92 SGEDPLYTLIGH----QGNVC-SLSFQDGVVISGSWDKTAKVWK--EGSLVYNLQAHNAS 144
Query: 281 I---ECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTG 337
+ + + FS + T S D+ + +W + + H D V L + ++ +
Sbjct: 145 VWDAKVVSFSENK--FLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFI-SC 201
Query: 338 CVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVF 388
DG +++ D +GD +RT+ GH + I + + D +VS D T R++
Sbjct: 202 SNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGD-IVSCGEDRTVRIW 251
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 276 SHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQH-SLPRSTCDHEDGVTCLMWLGTSKYV 334
+H I + F S + S D +L IW ++ S PR+ H VT + + + V
Sbjct: 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 196
Query: 335 VTGCVDGKVRVWDSLSGDCVRTFS 358
++ +DG +R+W+ +G + TF+
Sbjct: 197 LSASLDGTIRLWECGTGTTIHTFN 220
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 305 WDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAI 364
++LQ + ++ H +T L + + + +++ D ++++W G RT GHR +
Sbjct: 128 FNLQREIDQA---HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATV 184
Query: 365 QAISVSAHQDFLVSVSLDGTARVFE 389
I++ ++S SLDGT R++E
Sbjct: 185 TDIAIIDRGRNVLSASLDGTIRLWE 209
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 69/151 (45%), Gaps = 7/151 (4%)
Query: 125 GGLDGLVQIWDPSSGNLKCTL-EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY 183
G +G +++ D S+ NL+ + + + + + P G +++ S+D + +W+ +
Sbjct: 115 GTTEGDIKVLD-SNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN 173
Query: 184 LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVI--RGHPYHTEGLTC 241
GH ++VT G+ + + S D T+R+W +G IH + +P+
Sbjct: 174 PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIA 233
Query: 242 LTISADSTL-ALSGSKDGSVHMVNITTGKVV 271
L + D L +S SK ++ T GK V
Sbjct: 234 LFVGTDRQLHEISTSKKNNLEFG--TYGKYV 262
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%)
Query: 104 QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHI 163
Q H ++ L F G+ L S D ++IW G+ TL G V ++ RG
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 164 VLAGSEDSTVWMWNADRAAYLNMFS 188
VL+ S D T+ +W ++ F+
Sbjct: 196 VLSASLDGTIRLWECGTGTTIHTFN 220
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 189 GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADS 248
H S +T F P G+ + + S D L++W+ K G N + G H +T + I
Sbjct: 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIG---HRATVTDIAIIDRG 193
Query: 249 TLALSGSKDGSVHMVNITTGKVVSSL 274
LS S DG++ + TG + +
Sbjct: 194 RNVLSASLDGTIRLWECGTGTTIHTF 219
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQL 121
H E+ + P+ L+++ D + W + G + GH+ +V+ +A G+
Sbjct: 137 AHVSEITKLKFFPSGEALISSSQ-DMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 122 LASGGLDGLVQIWDPSSGNLKCTL---EGPGGGVEWVSW 157
+ S LDG +++W+ +G T E P GV ++
Sbjct: 196 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIAL 234
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 276 SHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQH-SLPRSTCDHEDGVTCLMWLGTSKYV 334
+H I + F S + S D +L IW ++ S PR+ H VT + + + V
Sbjct: 134 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 193
Query: 335 VTGCVDGKVRVWDSLSGDCVRTFS 358
++ +DG +R+W+ +G + TF+
Sbjct: 194 LSASLDGTIRLWECGTGTTIHTFN 217
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 305 WDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAI 364
++LQ + ++ H +T L + + + +++ D ++++W G RT GHR +
Sbjct: 125 FNLQREIDQA---HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATV 181
Query: 365 QAISVSAHQDFLVSVSLDGTARVFE 389
I++ ++S SLDGT R++E
Sbjct: 182 TDIAIIDRGRNVLSASLDGTIRLWE 206
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 69/151 (45%), Gaps = 7/151 (4%)
Query: 125 GGLDGLVQIWDPSSGNLKCTL-EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY 183
G +G +++ D S+ NL+ + + + + + P G +++ S+D + +W+ +
Sbjct: 112 GTTEGDIKVLD-SNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN 170
Query: 184 LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVI--RGHPYHTEGLTC 241
GH ++VT G+ + + S D T+R+W +G IH + +P+
Sbjct: 171 PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIA 230
Query: 242 LTISADSTL-ALSGSKDGSVHMVNITTGKVV 271
L + D L +S SK ++ T GK V
Sbjct: 231 LFVGTDRQLHEISTSKKNNLEFG--TYGKYV 259
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%)
Query: 104 QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHI 163
Q H ++ L F G+ L S D ++IW G+ TL G V ++ RG
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 164 VLAGSEDSTVWMWNADRAAYLNMFS 188
VL+ S D T+ +W ++ F+
Sbjct: 193 VLSASLDGTIRLWECGTGTTIHTFN 217
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 189 GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADS 248
H S +T F P G+ + + S D L++W+ K G N + G H +T + I
Sbjct: 134 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIG---HRATVTDIAIIDRG 190
Query: 249 TLALSGSKDGSVHMVNITTGKVVSSL 274
LS S DG++ + TG + +
Sbjct: 191 RNVLSASLDGTIRLWECGTGTTIHTF 216
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQL 121
H E+ + P+ L+++ D + W + G + GH+ +V+ +A G+
Sbjct: 134 AHVSEITKLKFFPSGEALISSSQ-DMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 122 LASGGLDGLVQIWDPSSGNLKCTL---EGPGGGVEWVSW 157
+ S LDG +++W+ +G T E P GV ++
Sbjct: 193 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIAL 231
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 88/227 (38%), Gaps = 23/227 (10%)
Query: 100 ASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP 159
A ++ GH+ ++ + ++ +G LL S D +W +G TL+G G + +
Sbjct: 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDC 84
Query: 160 RGHIVLAGSEDSTVWMWNADRAAYLNMFSG-----HGSSVTCGDF----------TPDGK 204
+ GS D ++ +W+ + + CG++ P
Sbjct: 85 FTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSI 144
Query: 205 TICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST---LALSGSKDGSVH 261
I D+ S E IH I H EGL T++ ST ++G KDG +
Sbjct: 145 NIYEIERDSATHELTKVSEEPIHKIITH----EGLDAATVAGWSTKGKYIIAGHKDGKIS 200
Query: 262 MVNITTG-KVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDL 307
+++ + V S+ H SI + FS + T S D + D+
Sbjct: 201 KYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDV 247
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 39/203 (19%), Positives = 85/203 (41%), Gaps = 18/203 (8%)
Query: 155 VSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT 214
V ++ G ++ + S+DS+ +W + L GH ++ D K TGS D +
Sbjct: 38 VKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYS 97
Query: 215 LRVWNPKSGENIHV------IRGHPYHTEGLTCLTISADSTLALSGS-------KDGSVH 261
+++W+ +G+ + ++ + G L I D+ + GS +D + H
Sbjct: 98 IKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAI-LDNVMKNPGSINIYEIERDSATH 156
Query: 262 MVNITTGKVVSSLVSHT--DSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPR--STCD 317
+ + + + +++H D+ G+S + G D K+ +D+ ++ S
Sbjct: 157 ELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDL 216
Query: 318 HEDGVTCLMWLGTSKYVVTGCVD 340
HE ++ + + Y +T D
Sbjct: 217 HEKSISDMQFSPDLTYFITSSRD 239
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 45/239 (18%), Positives = 81/239 (33%), Gaps = 67/239 (28%)
Query: 223 GENIHVIRGHPY------HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS 276
GEN++ H H LT + + + L S SKD S + G+ + +L
Sbjct: 13 GENLYFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDG 72
Query: 277 HTDSIECIGFSRSSPWAATGSMDQKLIIWDLQ---------------------------- 308
HT +I I + + TGS D + +WD+
Sbjct: 73 HTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLA 132
Query: 309 --------------HSLPRSTCDHE------------------DGVTCLMWLGTSKYVVT 336
+ + R + HE D T W KY++
Sbjct: 133 ILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIA 192
Query: 337 GCVDGKVRVWD-SLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADFK 394
G DGK+ +D S + + V + H +I + S + ++ S D + + +++ +
Sbjct: 193 GHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQ 251
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 78 TLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI--WD 135
T A G + F+ +I + + +QGH ++++A S G ASGG DG +++ ++
Sbjct: 287 TTSANEGKFEARFYHKIFEEE-IGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFE 345
Query: 136 PSSGNLKCTLEGPGGGVE 153
S + K +E E
Sbjct: 346 KSYFDFKYDVEKAAEAKE 363
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEW-VSWHPRG-HIVLAGSEDSTVWMWN 177
++A+GG DG++ IWD G + +L W V +HP + SED ++W W+
Sbjct: 250 HVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWD 309
Query: 178 A--DRAAYLNMFSGHGSSVT 195
A D ++F G S T
Sbjct: 310 ASTDVPEKSSLFHQGGRSST 329
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 34.7 bits (78), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 8/130 (6%)
Query: 108 DSVSSLAFS---MDGQLLASGGLDGLVQIWD--PSSGNLKCTLEGPGGGVEWVSWHPRGH 162
DS+ L+FS + G L +G V+ W+ S + + G V V W G
Sbjct: 40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS 99
Query: 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDF--TPDGKTICTGSDDATLRVWNP 220
V S D T MW+ + + + H + V + P+ + TGS D TL+ W+
Sbjct: 100 KVFTASCDKTAKMWDLSSNQAIQI-AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT 158
Query: 221 KSGENIHVIR 230
+S + V++
Sbjct: 159 RSSNPMMVLQ 168
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 295 TGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKY--VVTGCVDGKVRVWDSLSGD 352
T S D+ +WDL + H+ V + W+ Y V+TG D ++ WD+ S +
Sbjct: 103 TASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN 162
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 60/138 (43%), Gaps = 9/138 (6%)
Query: 193 SVTCGDFTPD---GKTICTGSDDATLRVWNPK-SGENIHVIRGHPYHTEGLTCLTISADS 248
S+ C F+P G + GS +R W + SG+ I + HT + + S D
Sbjct: 41 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP--KAQQMHTGPVLDVCWSDDG 98
Query: 249 TLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAA--TGSMDQKLIIWD 306
+ + S D + M ++++ + + + H ++ I + ++ ++ TGS D+ L WD
Sbjct: 99 SKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWD 157
Query: 307 LQHSLPRSTCDHEDGVTC 324
+ S P + C
Sbjct: 158 TRSSNPMMVLQLPERCYC 175
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 7/116 (6%)
Query: 258 GSVHMVNITTGKVVSSLVSHTDSIECIGFSRSS---PWAATGSMDQKLIIWDLQ---HSL 311
GS N K + S DSI C+ FS + + GS + W++Q ++
Sbjct: 19 GSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTI 78
Query: 312 PRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAI 367
P++ H V + W V T D ++WD LS + + H ++ I
Sbjct: 79 PKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWD-LSSNQAIQIAQHDAPVKTI 133
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 104 QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE--GPGGGVEWVSWHPRG 161
Q H V + +S DG + + D ++WD SS + P + W+ P
Sbjct: 83 QMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIK-APNY 141
Query: 162 HIVLAGSEDSTVWMWN 177
V+ GS D T+ W+
Sbjct: 142 SCVMTGSWDKTLKFWD 157
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 69/324 (21%), Positives = 124/324 (38%), Gaps = 71/324 (21%)
Query: 79 LVATGGG-------DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV 131
+VATG G D F+ + + I GH +++L + L SG DG +
Sbjct: 304 VVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP----LISGSYDGRI 359
Query: 132 QIWDPSS-----GNLKCTLEGPGG----GVEW--------VSWHPRG---HIVLAGSEDS 171
W SS NL +L+ + W ++ H G + A ++
Sbjct: 360 MEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGF 419
Query: 172 TVWMWNADRAAYLNMFSGH----------GSSVTCGDFTPDGKTICTGSDDA-TLRVWNP 220
T + N D L F+G GS+V+ + G ++ T++V+
Sbjct: 420 TAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQ-----NYVAVGLEEGNTIQVFKL 474
Query: 221 KSGENIH----VIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL-V 275
E +R P + ++IS T +G G + + ++ + +V +S
Sbjct: 475 SDLEVSFDLKTPLRAKPSY------ISISPSETYIAAGDVMGKILLYDLQSREVKTSRWA 528
Query: 276 SHTDSIECIGFSRSSPWA----------ATGSMDQKLIIWDLQHSLP--RSTCDHEDGVT 323
T I I + + A ATGS+D + I+ ++ + ++ H+DGV
Sbjct: 529 FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVN 588
Query: 324 CLMWLGTSKYVVTGCVDGKVRVWD 347
L+W S V +G D ++ W+
Sbjct: 589 NLLWETPSTLVSSGA-DACIKRWN 611
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 49/257 (19%), Positives = 94/257 (36%), Gaps = 19/257 (7%)
Query: 84 GGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLA-SGGLDGLVQIWDPSSGNLK 142
G D+ G F + G+ E+ GH +++ + + + G DG V +
Sbjct: 137 GRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS 196
Query: 143 C---TLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGD 198
T G V V + P G V+ D + ++ +L V G
Sbjct: 197 ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGI 256
Query: 199 FT---PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS 255
F D + T DAT+RVW+ + + + ++ + +S S
Sbjct: 257 FALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS 316
Query: 256 KDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRST 315
DG+++ + +V+ ++ H I + + +GS D +++ W S+
Sbjct: 317 LDGTLNFYELGHDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWS-------SS 365
Query: 316 CDHEDGVTCLMWLGTSK 332
H+D ++ L SK
Sbjct: 366 SMHQDHSNLIVSLDNSK 382
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 20/132 (15%)
Query: 229 IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL-VSHTDSIECIGFS 287
+R P + ++IS T +G G + + ++ + +V +S T I I +
Sbjct: 487 LRAKPSY------ISISPSETYIAAGDVXGKILLYDLQSREVKTSRWAFRTSKINAISWK 540
Query: 288 RSSPWA----------ATGSMDQKLIIWDLQH--SLPRSTCDHEDGVTCLMWLGTSKYVV 335
+ A ATGS+D + I+ ++ + ++ H+DGV L+W S V
Sbjct: 541 PAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPXKIIKALNAHKDGVNNLLWETPSTLVS 600
Query: 336 TGCVDGKVRVWD 347
+G D ++ W+
Sbjct: 601 SGA-DACIKRWN 611
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 116 SMDGQLLASGGLDGLVQIW----DPSSGNLKCTLEGPGGGVEWVSWHP----RGHIVLAG 167
+ + + +GG D LV+IW D + L+ TLEG V V+W P R ++ +
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLA-SV 225
Query: 168 SEDSTVWMWNAD 179
S+D T +W D
Sbjct: 226 SQDRTCIIWTQD 237
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 45/111 (40%), Gaps = 22/111 (19%)
Query: 60 FSGHSDEVYSVACSPTD--ATLVATGGGDDKGFFWRIN--QGDWASEI---QGHKDSVSS 112
GHSD V VA SPT + +A+ D W + QG W + + D +
Sbjct: 200 LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR 259
Query: 113 LAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHI 163
++S+ G +LA G D V +W K LEG W P G +
Sbjct: 260 ASWSLSGNVLALSGGDNKVTLW-------KENLEG--------KWEPAGEV 295
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 45/111 (40%), Gaps = 22/111 (19%)
Query: 60 FSGHSDEVYSVACSPTD--ATLVATGGGDDKGFFWRIN--QGDWASEI---QGHKDSVSS 112
GHSD V VA SPT + +A+ D W + QG W + + D +
Sbjct: 200 LEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR 259
Query: 113 LAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHI 163
++S+ G +LA G D V +W K LEG W P G +
Sbjct: 260 ASWSLSGNVLALSGGDNKVTLW-------KENLEG--------KWEPAGEV 295
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 116 SMDGQLLASGGLDGLVQIW----DPSSGNLKCTLEGPGGGVEWVSWHP----RGHIVLAG 167
+ + + +GG D LV+IW D + L+ TLEG V V+W P R ++ +
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMA-SV 225
Query: 168 SEDSTVWMWNAD 179
S+D T +W D
Sbjct: 226 SQDRTCIIWTQD 237
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 45/111 (40%), Gaps = 22/111 (19%)
Query: 60 FSGHSDEVYSVACSPTD--ATLVATGGGDDKGFFWRIN--QGDWASEI---QGHKDSVSS 112
GHSD V VA SPT + +A+ D W + QG W + + D +
Sbjct: 200 LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR 259
Query: 113 LAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHI 163
++S+ G +LA G D V +W K LEG W P G +
Sbjct: 260 ASWSLSGNVLALSGGDNKVTLW-------KENLEG--------KWEPAGEV 295
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 116 SMDGQLLASGGLDGLVQIW----DPSSGNLKCTLEGPGGGVEWVSWHP----RGHIVLAG 167
+ + + +GG D LV+IW D + L+ TLEG V V+W P R ++ +
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLA-SV 225
Query: 168 SEDSTVWMWNAD 179
S+D T +W D
Sbjct: 226 SQDRTCIIWTQD 237
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 73/209 (34%), Gaps = 52/209 (24%)
Query: 60 FSGHSDEVYSVACS-PTDATLVATGGGDDKGFFWRINQGDW--ASEIQGHKDSVSSLAFS 116
GH V+ VA + P ++A+ D K WR G W + E GH SV+S+ ++
Sbjct: 53 LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWA 112
Query: 117 MD--GQLLASGGLDGLVQI--------WDPSSGNLKCTLEGPGGGVEWVSW--------- 157
G +LA G DG + + W+ N T+ G VSW
Sbjct: 113 PHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTI-----GCNAVSWAPAVVPGSL 167
Query: 158 --HPRGHI------VLAGSEDSTVWMWNADRAAYLN---MFSGHGSSV------------ 194
HP G +G D+ + +W + H V
Sbjct: 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLP 227
Query: 195 --TCGDFTPDGKTICTGSDDATLRVWNPK 221
T + DG+ DDA+ W+PK
Sbjct: 228 TSTIASCSQDGRVFIWTCDDASSNTWSPK 256
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 62/156 (39%), Gaps = 28/156 (17%)
Query: 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKG--FFWRINQGDWASEIQGHKDSVSS 112
+ +H +GH V SV +P D L+ G D +G W + + ++
Sbjct: 94 EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGC 153
Query: 113 LAFS-----MDGQLL--------------ASGGLDGLVQIW-DPSSGNLK--CTLEGPGG 150
A S + G L+ ASGG D L+++W + G K LE
Sbjct: 154 NAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSD 213
Query: 151 GVEWVSWHPRGHI----VLAGSEDSTVWMWNADRAA 182
V V+W P + + + S+D V++W D A+
Sbjct: 214 WVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDAS 249
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 45/111 (40%), Gaps = 22/111 (19%)
Query: 60 FSGHSDEVYSVACSPTD--ATLVATGGGDDKGFFWRIN--QGDWASEI---QGHKDSVSS 112
GHSD V VA SPT + +A+ D W + QG W + + D +
Sbjct: 202 LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR 261
Query: 113 LAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHI 163
++S+ G +LA G D V +W K LEG W P G +
Sbjct: 262 ASWSLSGNVLALSGGDNKVTLW-------KENLEG--------KWEPAGEV 297
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 116 SMDGQLLASGGLDGLVQIW----DPSSGNLKCTLEGPGGGVEWVSWHP----RGHIVLAG 167
+ + + +GG D LV+IW D + L+ TLEG V V+W P R ++ +
Sbjct: 169 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLA-SV 227
Query: 168 SEDSTVWMWNAD 179
S+D T +W D
Sbjct: 228 SQDRTCIIWTQD 239
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 189 GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
H S V F G+T+C+ D LR W+ K+ E I + H
Sbjct: 289 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 332
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 105 GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL 145
H V SL+F+ G+ L S G DG ++ WD + TL
Sbjct: 289 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTL 329
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 189 GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232
H S V F G+T+C+ D LR W+ K+ E I + H
Sbjct: 299 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 342
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 105 GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL 145
H V SL+F+ G+ L S G DG ++ WD + TL
Sbjct: 299 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTL 339
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 44/111 (39%), Gaps = 22/111 (19%)
Query: 60 FSGHSDEVYSVACSPTD--ATLVATGGGDDKGFFWRIN--QGDWASEI---QGHKDSVSS 112
GHSD V VA SPT + A+ D W + QG W + + D +
Sbjct: 200 LEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR 259
Query: 113 LAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHI 163
++S+ G +LA G D V +W K LEG W P G +
Sbjct: 260 ASWSLSGNVLALSGGDNKVTLW-------KENLEG--------KWEPAGEV 295
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 116 SMDGQLLASGGLDGLVQIW----DPSSGNLKCTLEGPGGGVEWVSWHP----RGHIVLAG 167
+ + + +GG D LV+IW D + L+ TLEG V V+W P R + +
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXA-SV 225
Query: 168 SEDSTVWMWNAD 179
S+D T +W D
Sbjct: 226 SQDRTCIIWTQD 237
>pdb|1JRO|A Chain A, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRO|C Chain C, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRO|E Chain E, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRO|G Chain G, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRP|A Chain A, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|C Chain C, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|E Chain E, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|G Chain G, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
Length = 462
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 152 VEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD 211
+W HP ++ AG D ++W+ A R F H + TPDG I G
Sbjct: 190 ADWYLAHPEATLI-AGGTDVSLWVTKALRDLPEVAFLSHCKDLAQIRETPDGYGIGAGVT 248
Query: 212 DATLRVW 218
A LR +
Sbjct: 249 IAALRAF 255
>pdb|2W3R|A Chain A, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|C Chain C, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|E Chain E, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|G Chain G, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3S|A Chain A, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|C Chain C, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|E Chain E, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|G Chain G, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W54|A Chain A, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|C Chain C, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|E Chain E, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|G Chain G, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W55|A Chain A, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
pdb|2W55|C Chain C, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
pdb|2W55|E Chain E, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
pdb|2W55|G Chain G, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
Length = 462
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 152 VEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD 211
+W HP ++ AG D ++W+ A R F H + TPDG I G
Sbjct: 190 ADWYLAHPEATLI-AGGTDVSLWVTKALRDLPEVAFLSHCKDLAQIRETPDGYGIGAGVT 248
Query: 212 DATLRVW 218
A LR +
Sbjct: 249 IAALRAF 255
>pdb|3EBL|A Chain A, Crystal Structure Of Rice Gid1 Complexed With Ga4
pdb|3EBL|B Chain B, Crystal Structure Of Rice Gid1 Complexed With Ga4
pdb|3EBL|C Chain C, Crystal Structure Of Rice Gid1 Complexed With Ga4
pdb|3EBL|D Chain D, Crystal Structure Of Rice Gid1 Complexed With Ga4
pdb|3EBL|E Chain E, Crystal Structure Of Rice Gid1 Complexed With Ga4
pdb|3EBL|F Chain F, Crystal Structure Of Rice Gid1 Complexed With Ga4
pdb|3ED1|A Chain A, Crystal Structure Of Rice Gid1 Complexed With Ga3
pdb|3ED1|B Chain B, Crystal Structure Of Rice Gid1 Complexed With Ga3
pdb|3ED1|C Chain C, Crystal Structure Of Rice Gid1 Complexed With Ga3
pdb|3ED1|D Chain D, Crystal Structure Of Rice Gid1 Complexed With Ga3
pdb|3ED1|E Chain E, Crystal Structure Of Rice Gid1 Complexed With Ga3
pdb|3ED1|F Chain F, Crystal Structure Of Rice Gid1 Complexed With Ga3
Length = 365
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 313 RSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAI--SVS 370
R C ++DG T L W+ + ++ +G D + RV+ LSGD H A++A V
Sbjct: 160 RYPCAYDDGWTALKWVMSQPFMRSGG-DAQARVF--LSGDSSGGNIAHHVAVRAADEGVK 216
Query: 371 AHQDFLVSVSLDGTAR 386
+ L++ GT R
Sbjct: 217 VCGNILLNAMFGGTER 232
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 64/182 (35%), Gaps = 42/182 (23%)
Query: 51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGG---GDDKGFFWRINQGDWA--SEIQG 105
E+P HI G + V+ P A V G G + I GD EI+
Sbjct: 5 EKPQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEK 64
Query: 106 HKDSVSSL--AFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHI 163
K A S+ + LA+G G + IW+ LE P E + +GH
Sbjct: 65 AKPIKCGTFGATSLQQRYLATGDFGGNLHIWN---------LEAP----EMPVYSVKGHK 111
Query: 164 VLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG 223
+ + D + + A I TGS D T++VW+P+
Sbjct: 112 EIINAIDGIGGLGIGEGAP----------------------EIVTGSRDGTVKVWDPRQK 149
Query: 224 EN 225
++
Sbjct: 150 DD 151
>pdb|2J04|B Chain B, The Tau60-Tau91 Subcomplex Of Yeast Transcription Factor
Iiic
pdb|2J04|D Chain D, The Tau60-Tau91 Subcomplex Of Yeast Transcription Factor
Iiic
Length = 524
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 19/41 (46%)
Query: 271 VSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSL 311
V LVS +I IG SR P GS D LII + L
Sbjct: 390 VHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRL 430
>pdb|3TMG|A Chain A, Crystal Structure Of Glycine Betaine, L-Proline Abc
Transporter, GlycineBETAINEL-Proline-Binding Protein
(Prox) From Borrelia Burgdorferi
pdb|3TMG|B Chain B, Crystal Structure Of Glycine Betaine, L-Proline Abc
Transporter, GlycineBETAINEL-Proline-Binding Protein
(Prox) From Borrelia Burgdorferi
pdb|3TMG|C Chain C, Crystal Structure Of Glycine Betaine, L-Proline Abc
Transporter, GlycineBETAINEL-Proline-Binding Protein
(Prox) From Borrelia Burgdorferi
pdb|3TMG|D Chain D, Crystal Structure Of Glycine Betaine, L-Proline Abc
Transporter, GlycineBETAINEL-Proline-Binding Protein
(Prox) From Borrelia Burgdorferi
Length = 280
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 102 EIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS 138
E G+ + S+ S+ Q LASG +DG V W P++
Sbjct: 40 EKMGYNAEIFSVTTSIMYQYLASGKIDGTVSSWVPTA 76
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 14/137 (10%)
Query: 60 FSGHSDEVYSVACSPTDA---TLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAF- 115
GH + S++ +P+ L+ATG D + ++I + S + + +S F
Sbjct: 210 LPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK--LSPLASEESLTNSNMFD 267
Query: 116 -SMDGQLLASGGLDGLVQIWDPSSGNLKCTL----EGPGGGVEWVSWHPRGHIVLAGSED 170
S D + A G D + NL+ L + G V VSW+ G I+ + +D
Sbjct: 268 NSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDD 327
Query: 171 STVWMWNADRAAYLNMF 187
V +W +A Y N F
Sbjct: 328 GKVRLW---KATYSNEF 341
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,884,924
Number of Sequences: 62578
Number of extensions: 566846
Number of successful extensions: 2949
Number of sequences better than 100.0: 118
Number of HSP's better than 100.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1333
Number of HSP's gapped (non-prelim): 547
length of query: 394
length of database: 14,973,337
effective HSP length: 101
effective length of query: 293
effective length of database: 8,652,959
effective search space: 2535316987
effective search space used: 2535316987
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)