Query 016187
Match_columns 394
No_of_seqs 395 out of 2711
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 04:35:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016187.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016187hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0296 Angio-associated migra 100.0 7.4E-65 1.6E-69 425.9 36.4 386 3-392 3-399 (399)
2 KOG0271 Notchless-like WD40 re 100.0 3.1E-61 6.8E-66 406.2 30.2 330 55-389 106-479 (480)
3 KOG0271 Notchless-like WD40 re 100.0 2.8E-54 6.1E-59 364.1 27.3 292 98-393 106-441 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 2E-53 4.4E-58 363.2 24.8 282 105-389 173-458 (459)
5 KOG0272 U4/U6 small nuclear ri 100.0 2.3E-51 5E-56 350.6 25.1 283 61-347 172-458 (459)
6 KOG0286 G-protein beta subunit 100.0 2E-49 4.3E-54 324.0 34.4 286 100-389 48-343 (343)
7 KOG0273 Beta-transducin family 100.0 5.4E-47 1.2E-51 327.9 33.9 335 50-391 165-523 (524)
8 KOG0318 WD40 repeat stress pro 100.0 5.3E-46 1.1E-50 325.8 39.3 337 54-391 137-602 (603)
9 KOG0286 G-protein beta subunit 100.0 1.6E-45 3.5E-50 301.1 33.5 291 52-347 43-343 (343)
10 KOG0279 G protein beta subunit 100.0 2.3E-45 5E-50 298.4 33.9 289 56-349 7-313 (315)
11 KOG0279 G protein beta subunit 100.0 3.7E-45 8E-50 297.2 32.6 292 98-392 6-314 (315)
12 KOG0315 G-protein beta subunit 100.0 2.9E-44 6.4E-49 287.5 32.3 291 76-370 9-309 (311)
13 KOG0319 WD40-repeat-containing 100.0 3.2E-45 7E-50 332.6 30.1 332 57-389 97-617 (775)
14 KOG0291 WD40-repeat-containing 100.0 2.7E-43 5.8E-48 320.7 40.1 337 51-391 132-508 (893)
15 KOG0291 WD40-repeat-containing 100.0 2E-43 4.4E-48 321.5 39.1 328 62-392 263-613 (893)
16 KOG0318 WD40 repeat stress pro 100.0 8.2E-43 1.8E-47 305.8 39.7 339 54-393 49-562 (603)
17 KOG0295 WD40 repeat-containing 100.0 1.9E-44 4.1E-49 303.0 25.2 291 54-348 98-405 (406)
18 KOG0319 WD40-repeat-containing 100.0 4.6E-44 1E-48 325.1 28.4 330 63-393 61-537 (775)
19 KOG0295 WD40 repeat-containing 100.0 3.1E-44 6.7E-49 301.7 25.1 290 98-390 99-405 (406)
20 KOG0265 U5 snRNP-specific prot 100.0 1.1E-43 2.5E-48 291.3 27.5 288 99-390 39-337 (338)
21 KOG0315 G-protein beta subunit 100.0 4.5E-42 9.8E-47 274.9 30.0 269 120-393 11-290 (311)
22 KOG0293 WD40 repeat-containing 100.0 3.9E-43 8.4E-48 299.4 25.1 299 50-393 210-515 (519)
23 KOG0645 WD40 repeat protein [G 100.0 2.5E-41 5.5E-46 273.8 33.7 285 56-349 6-311 (312)
24 KOG0273 Beta-transducin family 100.0 6.9E-42 1.5E-46 296.3 31.3 279 65-349 236-523 (524)
25 KOG0284 Polyadenylation factor 100.0 8.6E-44 1.9E-48 303.0 18.8 281 106-390 95-379 (464)
26 KOG0285 Pleiotropic regulator 100.0 2.9E-42 6.4E-47 289.2 26.8 290 52-347 139-437 (460)
27 KOG0263 Transcription initiati 100.0 5.5E-42 1.2E-46 314.5 29.8 306 53-379 367-703 (707)
28 KOG0285 Pleiotropic regulator 100.0 6.6E-42 1.4E-46 287.1 27.7 288 99-391 143-439 (460)
29 cd00200 WD40 WD40 domain, foun 100.0 1.7E-40 3.7E-45 294.3 38.3 286 101-389 3-289 (289)
30 KOG0645 WD40 repeat protein [G 100.0 1.3E-40 2.9E-45 269.6 33.4 288 99-391 6-311 (312)
31 KOG0282 mRNA splicing factor [ 100.0 4.4E-43 9.4E-48 304.8 20.0 296 52-389 202-503 (503)
32 KOG0284 Polyadenylation factor 100.0 3.5E-43 7.5E-48 299.3 18.1 279 65-347 97-378 (464)
33 KOG0266 WD40 repeat-containing 100.0 1.2E-40 2.6E-45 312.4 35.0 295 57-391 151-454 (456)
34 cd00200 WD40 WD40 domain, foun 100.0 4.8E-39 1E-43 285.0 37.8 286 58-347 3-289 (289)
35 KOG0263 Transcription initiati 100.0 2.1E-41 4.6E-46 310.7 22.4 277 102-392 373-650 (707)
36 KOG0265 U5 snRNP-specific prot 100.0 8.7E-40 1.9E-44 268.5 28.7 287 54-345 37-334 (338)
37 PLN00181 protein SPA1-RELATED; 100.0 1.4E-38 3E-43 319.6 41.2 299 86-390 457-792 (793)
38 KOG0276 Vesicle coat complex C 100.0 1.9E-39 4.1E-44 290.0 30.5 285 57-345 6-295 (794)
39 KOG0306 WD40-repeat-containing 100.0 1.2E-38 2.5E-43 290.4 32.9 321 64-391 65-580 (888)
40 KOG0316 Conserved WD40 repeat- 100.0 1.5E-38 3.3E-43 252.8 27.7 292 50-389 3-297 (307)
41 KOG0296 Angio-associated migra 100.0 3.3E-38 7.1E-43 265.6 28.8 288 100-392 57-357 (399)
42 KOG0292 Vesicle coat complex C 100.0 6.5E-39 1.4E-43 296.6 26.6 314 61-392 6-322 (1202)
43 KOG0306 WD40-repeat-containing 100.0 1.2E-37 2.6E-42 283.8 34.0 324 65-392 321-665 (888)
44 KOG0643 Translation initiation 100.0 8.9E-39 1.9E-43 258.6 23.5 286 102-391 5-317 (327)
45 KOG0281 Beta-TrCP (transducin 100.0 1.3E-39 2.9E-44 272.4 17.2 273 63-353 196-481 (499)
46 KOG0276 Vesicle coat complex C 100.0 3.9E-38 8.4E-43 281.6 27.3 285 100-387 6-295 (794)
47 PLN00181 protein SPA1-RELATED; 100.0 1E-36 2.2E-41 306.1 41.1 282 60-348 479-792 (793)
48 KOG0281 Beta-TrCP (transducin 100.0 9.5E-40 2.1E-44 273.3 15.6 274 106-393 196-479 (499)
49 KOG0278 Serine/threonine kinas 100.0 8.6E-39 1.9E-43 256.3 20.1 286 100-391 7-297 (334)
50 KOG0278 Serine/threonine kinas 100.0 3.4E-38 7.3E-43 252.9 19.1 290 58-354 8-302 (334)
51 KOG0772 Uncharacterized conser 100.0 1.1E-36 2.3E-41 266.9 28.1 307 52-389 155-485 (641)
52 KOG0288 WD40 repeat protein Ti 100.0 7.9E-39 1.7E-43 273.2 14.3 296 49-389 160-459 (459)
53 KOG0275 Conserved WD40 repeat- 100.0 3.4E-38 7.4E-43 261.9 17.6 282 105-389 211-507 (508)
54 KOG0313 Microtubule binding pr 100.0 3.6E-36 7.7E-41 254.5 28.1 277 106-391 104-418 (423)
55 KOG0640 mRNA cleavage stimulat 100.0 5.8E-37 1.3E-41 253.0 22.3 289 101-389 106-424 (430)
56 KOG0313 Microtubule binding pr 100.0 3.4E-36 7.4E-41 254.6 26.4 285 53-348 95-417 (423)
57 KOG0266 WD40 repeat-containing 100.0 7.8E-36 1.7E-40 279.9 29.7 251 56-307 195-453 (456)
58 KOG1407 WD40 repeat protein [F 100.0 3.6E-35 7.8E-40 237.0 27.3 286 101-392 14-312 (313)
59 KOG1446 Histone H3 (Lys4) meth 100.0 6.7E-34 1.4E-38 236.0 33.3 284 99-389 6-301 (311)
60 KOG0292 Vesicle coat complex C 100.0 3E-34 6.4E-39 265.9 34.4 318 56-390 43-396 (1202)
61 KOG0275 Conserved WD40 repeat- 100.0 1.1E-36 2.4E-41 252.9 16.5 286 59-347 208-507 (508)
62 KOG0274 Cdc4 and related F-box 100.0 1.9E-34 4.1E-39 270.0 31.8 288 58-360 201-493 (537)
63 KOG0289 mRNA splicing factor [ 100.0 1.5E-34 3.3E-39 248.5 27.7 282 108-390 220-505 (506)
64 KOG0316 Conserved WD40 repeat- 100.0 4.9E-35 1.1E-39 232.8 22.7 246 141-392 9-258 (307)
65 KOG0268 Sof1-like rRNA process 100.0 4.5E-36 9.8E-41 252.5 16.9 289 57-355 59-351 (433)
66 KOG0274 Cdc4 and related F-box 100.0 4.9E-34 1.1E-38 267.2 31.5 274 106-393 207-484 (537)
67 KOG0643 Translation initiation 100.0 2.1E-33 4.6E-38 227.5 29.2 285 58-347 4-315 (327)
68 KOG0640 mRNA cleavage stimulat 100.0 3.3E-34 7.2E-39 236.8 24.5 293 53-347 101-424 (430)
69 KOG0310 Conserved WD40 repeat- 100.0 2.9E-34 6.3E-39 250.3 25.1 278 64-347 26-307 (487)
70 KOG1539 WD repeat protein [Gen 100.0 2.3E-33 4.9E-38 258.8 32.3 338 54-392 192-607 (910)
71 KOG1063 RNA polymerase II elon 100.0 1.9E-33 4E-38 254.6 28.9 339 55-393 182-650 (764)
72 KOG0641 WD40 repeat protein [G 100.0 7.9E-32 1.7E-36 213.5 34.1 285 62-348 30-348 (350)
73 KOG0973 Histone transcription 100.0 2.7E-33 5.8E-38 265.9 30.0 287 63-350 12-356 (942)
74 KOG1407 WD40 repeat protein [F 100.0 5.8E-33 1.3E-37 224.2 27.4 277 58-340 14-293 (313)
75 KOG0310 Conserved WD40 repeat- 100.0 4.2E-33 9.1E-38 243.1 26.5 276 106-388 25-306 (487)
76 KOG0283 WD40 repeat-containing 100.0 1.2E-33 2.7E-38 261.8 24.4 285 101-393 260-578 (712)
77 KOG0282 mRNA splicing factor [ 100.0 1.2E-34 2.6E-39 252.4 16.2 249 140-392 205-463 (503)
78 KOG0308 Conserved WD40 repeat- 100.0 9.9E-34 2.1E-38 254.7 22.1 319 69-391 29-393 (735)
79 KOG0300 WD40 repeat-containing 100.0 2E-33 4.4E-38 232.9 22.3 289 58-351 142-478 (481)
80 KOG0305 Anaphase promoting com 100.0 1E-32 2.2E-37 249.4 28.6 275 112-392 182-462 (484)
81 PTZ00421 coronin; Provisional 100.0 2.7E-31 5.8E-36 248.5 36.5 264 106-372 19-314 (493)
82 KOG0289 mRNA splicing factor [ 100.0 2.8E-32 6.1E-37 234.6 26.8 280 65-348 220-505 (506)
83 PTZ00421 coronin; Provisional 100.0 4.7E-31 1E-35 246.9 37.3 264 64-330 20-314 (493)
84 KOG0277 Peroxisomal targeting 100.0 1.4E-32 3E-37 221.3 22.8 279 67-348 11-308 (311)
85 KOG0277 Peroxisomal targeting 100.0 1.5E-32 3.3E-37 221.0 22.6 277 111-390 12-308 (311)
86 KOG0268 Sof1-like rRNA process 100.0 1.7E-33 3.6E-38 237.0 16.6 283 98-390 57-344 (433)
87 KOG0300 WD40 repeat-containing 100.0 3.1E-32 6.7E-37 225.9 22.8 291 98-393 139-478 (481)
88 KOG0973 Histone transcription 100.0 1.5E-31 3.4E-36 254.0 29.4 284 106-392 12-356 (942)
89 KOG0293 WD40 repeat-containing 100.0 2E-32 4.2E-37 234.2 20.6 251 56-309 261-514 (519)
90 KOG1539 WD repeat protein [Gen 100.0 1.4E-30 3E-35 240.5 34.1 331 57-389 237-646 (910)
91 PTZ00420 coronin; Provisional 100.0 1.1E-30 2.3E-35 245.7 33.3 249 82-331 49-318 (568)
92 KOG2106 Uncharacterized conser 100.0 4.1E-30 8.9E-35 225.2 34.0 328 55-392 95-478 (626)
93 KOG1446 Histone H3 (Lys4) meth 100.0 1.3E-29 2.9E-34 210.5 34.0 287 56-347 6-301 (311)
94 KOG2096 WD40 repeat protein [G 100.0 1E-30 2.2E-35 217.0 26.8 283 101-389 80-400 (420)
95 PTZ00420 coronin; Provisional 100.0 3.9E-30 8.5E-35 241.8 34.2 244 125-373 50-318 (568)
96 KOG0283 WD40 repeat-containing 100.0 2.1E-31 4.6E-36 247.0 25.0 244 60-307 262-575 (712)
97 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 2.9E-29 6.2E-34 225.2 38.3 286 78-371 2-300 (300)
98 KOG0299 U3 snoRNP-associated p 100.0 1.3E-30 2.9E-35 225.9 27.0 295 57-388 135-453 (479)
99 KOG0294 WD40 repeat-containing 100.0 1.4E-30 3E-35 215.9 25.4 246 55-310 34-283 (362)
100 KOG0305 Anaphase promoting com 100.0 2.2E-30 4.9E-35 234.2 29.1 274 69-351 182-463 (484)
101 KOG0301 Phospholipase A2-activ 100.0 1.4E-30 3.1E-35 236.0 27.2 277 57-349 7-288 (745)
102 KOG0264 Nucleosome remodeling 100.0 1.7E-30 3.7E-35 225.2 25.9 247 61-310 121-406 (422)
103 KOG1408 WD40 repeat protein [F 100.0 3.9E-30 8.5E-35 233.8 28.3 321 67-391 327-713 (1080)
104 KOG0647 mRNA export protein (c 100.0 3.2E-30 6.9E-35 212.5 25.2 267 106-379 26-311 (347)
105 KOG0308 Conserved WD40 repeat- 100.0 2.2E-31 4.7E-36 239.7 19.3 286 106-391 20-327 (735)
106 KOG0647 mRNA export protein (c 100.0 7.6E-30 1.7E-34 210.3 26.6 271 62-337 25-311 (347)
107 KOG0301 Phospholipase A2-activ 100.0 4.5E-30 9.8E-35 232.8 27.7 281 97-391 4-288 (745)
108 KOG0639 Transducin-like enhanc 100.0 1E-30 2.2E-35 228.8 21.1 281 61-348 416-703 (705)
109 KOG2106 Uncharacterized conser 100.0 1.3E-28 2.8E-33 215.9 34.2 317 64-391 200-581 (626)
110 KOG0294 WD40 repeat-containing 100.0 2.3E-29 5E-34 208.6 27.6 242 143-392 37-282 (362)
111 KOG1036 Mitotic spindle checkp 100.0 2E-29 4.3E-34 208.6 26.3 267 106-381 12-294 (323)
112 KOG4283 Transcription-coupled 100.0 3E-29 6.5E-34 206.1 26.7 300 57-390 36-364 (397)
113 KOG1063 RNA polymerase II elon 100.0 4.5E-29 9.8E-34 226.3 27.1 325 68-392 149-603 (764)
114 KOG1332 Vesicle coat complex C 100.0 2.4E-29 5.2E-34 201.5 18.7 245 103-347 7-284 (299)
115 KOG0646 WD40 repeat protein [G 100.0 8.9E-29 1.9E-33 215.0 23.6 292 78-374 8-332 (476)
116 KOG0288 WD40 repeat protein Ti 100.0 2.6E-29 5.7E-34 215.1 19.3 245 56-305 211-458 (459)
117 KOG0641 WD40 repeat protein [G 100.0 6.5E-27 1.4E-31 185.7 31.3 281 106-391 31-349 (350)
118 KOG0299 U3 snoRNP-associated p 100.0 1.2E-28 2.5E-33 213.9 22.2 264 100-392 135-411 (479)
119 KOG0639 Transducin-like enhanc 100.0 7.8E-29 1.7E-33 217.1 20.8 281 105-391 417-704 (705)
120 KOG0650 WD40 repeat nucleolar 100.0 3.6E-28 7.7E-33 217.1 24.9 319 51-388 387-732 (733)
121 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 2.4E-26 5.1E-31 206.2 36.1 268 119-394 1-282 (300)
122 KOG1036 Mitotic spindle checkp 100.0 4.5E-27 9.7E-32 194.7 28.3 268 64-339 13-294 (323)
123 KOG1274 WD40 repeat protein [G 100.0 4E-27 8.6E-32 220.1 30.0 280 61-346 10-297 (933)
124 KOG1273 WD40 repeat protein [G 100.0 4.1E-27 9E-32 195.3 26.2 280 110-392 26-323 (405)
125 KOG0646 WD40 repeat protein [G 100.0 1.5E-27 3.2E-32 207.5 24.3 265 124-392 12-308 (476)
126 KOG1408 WD40 repeat protein [F 100.0 6.1E-27 1.3E-31 213.2 26.3 291 58-349 363-713 (1080)
127 KOG0267 Microtubule severing p 100.0 2.7E-29 5.9E-34 228.7 10.7 253 79-340 6-259 (825)
128 KOG1274 WD40 repeat protein [G 100.0 1.8E-26 4E-31 215.6 29.0 272 105-385 11-294 (933)
129 KOG0321 WD40 repeat-containing 100.0 3.9E-27 8.5E-32 212.0 23.6 313 74-389 61-443 (720)
130 KOG0264 Nucleosome remodeling 100.0 2.2E-27 4.7E-32 206.0 21.1 245 147-391 122-404 (422)
131 KOG2055 WD40 repeat protein [G 100.0 1.9E-26 4.1E-31 200.3 25.6 282 64-349 213-512 (514)
132 KOG0269 WD40 repeat-containing 100.0 1.2E-27 2.6E-32 219.6 19.2 275 110-388 42-337 (839)
133 KOG2048 WD40 repeat protein [G 100.0 2.3E-25 5E-30 202.0 33.0 283 63-350 24-320 (691)
134 KOG0267 Microtubule severing p 100.0 7E-29 1.5E-33 226.0 10.4 242 55-300 19-260 (825)
135 KOG2055 WD40 repeat protein [G 100.0 5.5E-26 1.2E-30 197.5 27.1 283 107-393 213-514 (514)
136 KOG2096 WD40 repeat protein [G 100.0 5.9E-26 1.3E-30 188.7 25.7 285 56-347 78-400 (420)
137 KOG4378 Nuclear protein COP1 [ 100.0 1.8E-26 3.9E-31 202.1 23.2 290 79-373 6-305 (673)
138 KOG1332 Vesicle coat complex C 100.0 4.5E-27 9.7E-32 188.5 17.5 243 146-389 8-284 (299)
139 KOG2445 Nuclear pore complex c 100.0 1.4E-25 3E-30 185.7 26.5 266 103-390 9-317 (361)
140 KOG0772 Uncharacterized conser 100.0 1.7E-26 3.7E-31 203.1 21.2 241 64-306 214-485 (641)
141 KOG1538 Uncharacterized conser 100.0 4.8E-26 1E-30 206.0 23.9 280 66-391 14-293 (1081)
142 COG2319 FOG: WD40 repeat [Gene 99.9 6.8E-23 1.5E-27 191.7 45.0 332 56-392 100-443 (466)
143 KOG0269 WD40 repeat-containing 99.9 4.4E-27 9.6E-32 215.9 15.8 236 67-306 90-338 (839)
144 COG2319 FOG: WD40 repeat [Gene 99.9 9.3E-23 2E-27 190.8 44.4 329 58-393 59-402 (466)
145 KOG2445 Nuclear pore complex c 99.9 1.4E-24 3E-29 179.9 26.3 248 59-308 8-318 (361)
146 KOG2048 WD40 repeat protein [G 99.9 7.2E-24 1.6E-28 192.4 32.0 283 107-394 25-322 (691)
147 KOG0321 WD40 repeat-containing 99.9 3E-25 6.5E-30 199.9 22.9 282 111-392 53-392 (720)
148 KOG0302 Ribosome Assembly prot 99.9 2.8E-25 6E-30 188.6 21.0 243 56-301 143-432 (440)
149 KOG4328 WD40 protein [Function 99.9 1.1E-24 2.3E-29 189.3 24.1 289 60-389 182-493 (498)
150 KOG1445 Tumor-specific antigen 99.9 9.5E-25 2.1E-29 196.6 23.0 166 56-221 71-248 (1012)
151 KOG1273 WD40 repeat protein [G 99.9 2.7E-24 5.8E-29 178.7 23.7 290 53-349 14-322 (405)
152 KOG1009 Chromatin assembly com 99.9 6.3E-24 1.4E-28 182.0 25.0 304 64-391 13-372 (434)
153 KOG0270 WD40 repeat-containing 99.9 1.2E-23 2.6E-28 182.2 24.7 233 118-354 191-454 (463)
154 KOG1034 Transcriptional repres 99.9 5.6E-24 1.2E-28 177.7 21.5 288 59-349 33-383 (385)
155 KOG2919 Guanine nucleotide-bin 99.9 4.8E-23 1E-27 171.8 24.5 272 110-382 52-361 (406)
156 KOG1034 Transcriptional repres 99.9 2.4E-23 5.2E-28 174.0 21.1 285 103-390 34-382 (385)
157 KOG4283 Transcription-coupled 99.9 3.6E-23 7.7E-28 170.5 21.7 246 60-307 97-364 (397)
158 KOG0322 G-protein beta subunit 99.9 1.5E-23 3.3E-28 170.2 17.8 301 52-390 2-322 (323)
159 KOG0307 Vesicle coat complex C 99.9 4E-24 8.6E-29 204.8 15.5 279 112-392 11-328 (1049)
160 KOG0270 WD40 repeat-containing 99.9 9E-24 2E-28 183.0 15.6 210 61-271 240-454 (463)
161 KOG0302 Ribosome Assembly prot 99.9 6.4E-23 1.4E-27 174.3 18.7 172 52-223 199-380 (440)
162 KOG1963 WD40 repeat protein [G 99.9 6E-21 1.3E-25 178.6 33.2 285 106-392 204-539 (792)
163 KOG0650 WD40 repeat nucleolar 99.9 2.1E-22 4.6E-27 180.4 20.9 271 101-389 394-678 (733)
164 KOG0642 Cell-cycle nuclear pro 99.9 6.3E-23 1.4E-27 182.8 17.1 253 57-311 287-564 (577)
165 KOG4378 Nuclear protein COP1 [ 99.9 2.4E-22 5.1E-27 176.5 20.0 260 67-331 37-305 (673)
166 KOG0303 Actin-binding protein 99.9 3.4E-22 7.3E-27 170.9 20.3 234 54-290 71-321 (472)
167 KOG4328 WD40 protein [Function 99.9 4.3E-22 9.3E-27 173.2 20.8 248 141-390 178-449 (498)
168 KOG1007 WD repeat protein TSSC 99.9 1.5E-21 3.3E-26 160.5 20.8 248 57-309 56-362 (370)
169 KOG0307 Vesicle coat complex C 99.9 7.1E-23 1.5E-27 196.3 14.7 243 65-310 65-329 (1049)
170 KOG1188 WD40 repeat protein [G 99.9 1.1E-21 2.4E-26 164.9 19.5 269 120-391 41-346 (376)
171 KOG0642 Cell-cycle nuclear pro 99.9 4.2E-22 9.1E-27 177.6 17.7 260 101-362 288-574 (577)
172 KOG4227 WD40 repeat protein [G 99.9 4.4E-21 9.5E-26 164.0 22.6 287 101-389 50-385 (609)
173 KOG1445 Tumor-specific antigen 99.9 1.7E-20 3.7E-25 169.5 25.6 194 194-391 630-844 (1012)
174 KOG2919 Guanine nucleotide-bin 99.9 2.4E-21 5.3E-26 161.7 18.7 232 65-298 105-360 (406)
175 KOG1963 WD40 repeat protein [G 99.9 5.9E-20 1.3E-24 172.0 27.5 327 62-391 203-583 (792)
176 KOG0644 Uncharacterized conser 99.9 5.5E-22 1.2E-26 183.9 12.3 281 57-352 183-471 (1113)
177 KOG4227 WD40 repeat protein [G 99.9 5.4E-20 1.2E-24 157.4 23.0 290 56-347 48-385 (609)
178 KOG0644 Uncharacterized conser 99.9 4.3E-22 9.3E-27 184.7 10.4 281 99-390 182-467 (1113)
179 KOG1188 WD40 repeat protein [G 99.9 2.4E-20 5.2E-25 156.9 18.8 270 78-348 41-345 (376)
180 KOG1334 WD40 repeat protein [G 99.9 3.3E-21 7.2E-26 169.0 14.2 292 99-390 134-465 (559)
181 KOG1007 WD repeat protein TSSC 99.9 7.7E-20 1.7E-24 150.6 20.5 260 85-348 38-360 (370)
182 KOG1538 Uncharacterized conser 99.9 8.9E-19 1.9E-23 159.3 28.3 242 55-307 44-292 (1081)
183 PRK11028 6-phosphogluconolacto 99.9 1.3E-18 2.8E-23 158.1 30.0 261 123-391 6-304 (330)
184 KOG1517 Guanine nucleotide bin 99.9 1.9E-19 4E-24 171.3 24.9 281 108-392 1065-1382(1387)
185 KOG1517 Guanine nucleotide bin 99.9 1.2E-19 2.6E-24 172.5 23.5 285 64-351 1064-1383(1387)
186 KOG0771 Prolactin regulatory e 99.9 3.4E-19 7.3E-24 154.2 23.6 194 195-392 148-355 (398)
187 PRK11028 6-phosphogluconolacto 99.9 5.1E-18 1.1E-22 154.2 32.8 265 80-349 5-304 (330)
188 KOG0649 WD40 repeat protein [G 99.9 1.2E-18 2.7E-23 140.2 24.9 271 66-346 12-313 (325)
189 KOG0290 Conserved WD40 repeat- 99.9 1.1E-18 2.5E-23 143.9 24.6 277 66-345 46-361 (364)
190 KOG1240 Protein kinase contain 99.8 5.3E-19 1.1E-23 170.6 26.1 296 92-389 1034-1431(1431)
191 KOG1310 WD40 repeat protein [G 99.8 2.3E-19 5E-24 159.7 21.6 212 56-268 42-305 (758)
192 KOG4497 Uncharacterized conser 99.8 4E-18 8.7E-23 143.0 26.2 306 70-384 14-425 (447)
193 KOG1587 Cytoplasmic dynein int 99.8 1.4E-18 2.9E-23 162.4 25.7 264 86-349 221-516 (555)
194 KOG1524 WD40 repeat-containing 99.8 3.3E-19 7.1E-24 158.3 20.2 262 105-387 12-282 (737)
195 KOG0649 WD40 repeat protein [G 99.8 2.1E-18 4.5E-23 139.0 21.4 230 152-390 13-273 (325)
196 KOG0303 Actin-binding protein 99.8 4.4E-18 9.6E-23 145.9 23.9 205 102-310 76-296 (472)
197 KOG1009 Chromatin assembly com 99.8 2.2E-18 4.7E-23 148.3 20.5 250 56-310 57-374 (434)
198 KOG1587 Cytoplasmic dynein int 99.8 1.4E-17 3.1E-22 155.6 27.0 263 129-391 222-516 (555)
199 KOG2110 Uncharacterized conser 99.8 3.5E-16 7.6E-21 133.4 31.3 278 107-391 5-330 (391)
200 KOG1523 Actin-related protein 99.8 2.8E-17 6.2E-22 137.5 23.4 205 106-310 9-238 (361)
201 PRK01742 tolB translocation pr 99.8 6.4E-18 1.4E-22 158.4 22.1 233 86-330 183-426 (429)
202 PRK01742 tolB translocation pr 99.8 7.8E-18 1.7E-22 157.9 22.6 232 128-372 183-426 (429)
203 PF02239 Cytochrom_D1: Cytochr 99.8 4.2E-16 9E-21 141.8 32.8 309 80-394 9-350 (369)
204 KOG0771 Prolactin regulatory e 99.8 2.1E-18 4.5E-23 149.3 16.0 196 68-267 148-355 (398)
205 KOG2110 Uncharacterized conser 99.8 1.7E-16 3.7E-21 135.3 27.0 272 79-360 58-343 (391)
206 KOG1334 WD40 repeat protein [G 99.8 2.4E-18 5.2E-23 151.3 15.6 295 57-352 135-469 (559)
207 KOG1524 WD40 repeat-containing 99.8 1.4E-17 3.1E-22 148.0 20.2 264 62-346 12-283 (737)
208 KOG1272 WD40-repeat-containing 99.8 7.1E-19 1.5E-23 153.7 10.4 266 109-383 131-401 (545)
209 KOG1310 WD40 repeat protein [G 99.8 9.6E-18 2.1E-22 149.5 14.9 238 100-356 43-310 (758)
210 KOG0322 G-protein beta subunit 99.8 2.7E-17 5.8E-22 134.1 14.2 245 58-307 49-322 (323)
211 KOG1240 Protein kinase contain 99.8 1E-15 2.2E-20 148.4 27.1 247 60-308 1044-1334(1431)
212 PF02239 Cytochrom_D1: Cytochr 99.7 1.3E-14 2.8E-19 132.1 32.6 298 57-358 29-356 (369)
213 KOG2321 WD40 repeat protein [G 99.7 1E-15 2.3E-20 137.4 24.7 281 62-348 49-342 (703)
214 KOG2139 WD40 repeat protein [G 99.7 7.1E-15 1.5E-19 125.2 27.8 298 65-390 99-430 (445)
215 KOG3881 Uncharacterized conser 99.7 7E-16 1.5E-20 132.5 21.8 260 65-330 56-342 (412)
216 KOG4497 Uncharacterized conser 99.7 2.7E-15 5.8E-20 126.2 24.7 274 65-342 49-425 (447)
217 KOG0290 Conserved WD40 repeat- 99.7 8.9E-16 1.9E-20 127.0 19.3 236 62-304 94-361 (364)
218 PRK03629 tolB translocation pr 99.7 1.1E-14 2.4E-19 136.3 29.1 234 87-329 179-427 (429)
219 KOG2321 WD40 repeat protein [G 99.7 3.5E-15 7.6E-20 134.1 24.1 278 105-392 49-344 (703)
220 PRK03629 tolB translocation pr 99.7 1.2E-14 2.6E-19 136.1 28.9 232 129-371 179-427 (429)
221 KOG2394 WD40 protein DMR-N9 [G 99.7 1.2E-15 2.5E-20 136.1 19.4 242 109-370 125-383 (636)
222 KOG1523 Actin-related protein 99.7 9.6E-16 2.1E-20 128.4 17.8 202 190-391 9-236 (361)
223 KOG2111 Uncharacterized conser 99.7 7.1E-14 1.5E-18 117.3 28.7 274 110-389 8-320 (346)
224 PRK04922 tolB translocation pr 99.7 7.1E-15 1.5E-19 138.2 25.5 234 87-329 184-432 (433)
225 KOG2139 WD40 repeat protein [G 99.7 7.7E-15 1.7E-19 125.0 22.1 185 108-298 99-300 (445)
226 KOG1272 WD40-repeat-containing 99.7 8.9E-17 1.9E-21 140.7 10.6 229 151-389 131-360 (545)
227 PRK02889 tolB translocation pr 99.7 1.8E-14 3.8E-19 135.1 26.6 235 86-329 175-424 (427)
228 PRK04922 tolB translocation pr 99.7 1.4E-14 3E-19 136.2 25.9 234 129-371 184-432 (433)
229 PRK05137 tolB translocation pr 99.7 4.8E-14 1E-18 132.8 28.6 234 86-329 181-432 (435)
230 KOG3881 Uncharacterized conser 99.7 7.4E-15 1.6E-19 126.3 20.1 236 151-392 57-321 (412)
231 KOG2394 WD40 protein DMR-N9 [G 99.7 6.2E-16 1.3E-20 137.8 13.5 136 65-200 220-383 (636)
232 KOG1409 Uncharacterized conser 99.7 6.6E-15 1.4E-19 124.6 18.5 246 97-348 14-269 (404)
233 KOG2111 Uncharacterized conser 99.7 8.2E-14 1.8E-18 116.9 24.4 233 152-392 8-257 (346)
234 PRK02889 tolB translocation pr 99.7 5.3E-14 1.1E-18 131.9 25.4 235 129-372 176-425 (427)
235 KOG2315 Predicted translation 99.7 3.9E-13 8.5E-18 120.9 28.9 315 66-391 36-390 (566)
236 PRK05137 tolB translocation pr 99.7 2.7E-13 5.9E-18 127.7 29.0 233 129-371 182-432 (435)
237 PF08662 eIF2A: Eukaryotic tra 99.6 9.3E-14 2E-18 115.2 20.5 154 69-228 10-185 (194)
238 COG5354 Uncharacterized protei 99.6 2.2E-12 4.7E-17 114.9 28.4 314 63-391 31-395 (561)
239 KOG0974 WD-repeat protein WDR6 99.6 4.4E-14 9.5E-19 135.3 19.1 272 106-391 6-288 (967)
240 PF08662 eIF2A: Eukaryotic tra 99.6 1.9E-13 4.2E-18 113.2 20.2 148 154-310 10-181 (194)
241 TIGR02658 TTQ_MADH_Hv methylam 99.6 3.2E-11 6.8E-16 107.6 34.1 262 87-358 27-339 (352)
242 KOG1354 Serine/threonine prote 99.6 3.9E-13 8.4E-18 114.0 20.5 244 106-351 24-361 (433)
243 KOG0974 WD-repeat protein WDR6 99.6 5.3E-13 1.1E-17 128.1 23.8 147 72-222 141-289 (967)
244 TIGR02800 propeller_TolB tol-p 99.6 1.5E-12 3.3E-17 122.5 26.5 213 86-307 169-396 (417)
245 KOG4547 WD40 repeat-containing 99.6 3.3E-13 7.1E-18 122.2 20.7 189 201-391 3-220 (541)
246 TIGR03300 assembly_YfgL outer 99.6 2.7E-11 5.9E-16 112.3 34.3 299 79-388 67-376 (377)
247 TIGR02800 propeller_TolB tol-p 99.6 4.6E-12 1E-16 119.2 27.6 232 129-369 170-416 (417)
248 PRK00178 tolB translocation pr 99.5 6E-12 1.3E-16 118.7 27.3 233 88-329 180-427 (430)
249 KOG2314 Translation initiation 99.5 1.4E-11 3E-16 110.9 27.2 315 68-391 214-573 (698)
250 PF10282 Lactonase: Lactonase, 99.5 5.1E-10 1.1E-14 102.1 36.6 270 122-391 2-322 (345)
251 PF10282 Lactonase: Lactonase, 99.5 9.1E-10 2E-14 100.4 38.3 280 87-369 13-345 (345)
252 PRK00178 tolB translocation pr 99.5 2.2E-11 4.8E-16 114.9 28.4 233 130-371 180-427 (430)
253 KOG1409 Uncharacterized conser 99.5 3.1E-12 6.6E-17 108.7 19.8 246 56-308 16-270 (404)
254 PRK04792 tolB translocation pr 99.5 2.2E-11 4.8E-16 114.7 27.8 233 88-329 199-446 (448)
255 KOG1912 WD40 repeat protein [G 99.5 2.7E-11 5.8E-16 113.1 26.7 298 55-352 46-554 (1062)
256 TIGR02658 TTQ_MADH_Hv methylam 99.5 7.4E-10 1.6E-14 98.9 34.7 256 129-394 27-333 (352)
257 COG5354 Uncharacterized protei 99.5 4E-11 8.6E-16 107.0 25.3 294 89-391 14-348 (561)
258 KOG1354 Serine/threonine prote 99.5 1.2E-11 2.6E-16 105.1 20.9 241 149-391 25-359 (433)
259 KOG1064 RAVE (regulator of V-A 99.5 4.9E-13 1.1E-17 134.3 14.6 189 190-393 2207-2400(2439)
260 PRK04792 tolB translocation pr 99.5 3.5E-11 7.6E-16 113.3 26.4 233 130-371 199-446 (448)
261 PRK01029 tolB translocation pr 99.5 5.9E-11 1.3E-15 110.9 27.7 238 87-330 165-425 (428)
262 KOG4190 Uncharacterized conser 99.5 3.2E-13 6.8E-18 121.3 11.7 281 56-345 727-1032(1034)
263 KOG4547 WD40 repeat-containing 99.5 1.6E-11 3.5E-16 111.4 21.7 189 116-309 2-221 (541)
264 KOG1064 RAVE (regulator of V-A 99.5 5.4E-13 1.2E-17 134.1 12.7 193 103-310 2204-2400(2439)
265 PRK01029 tolB translocation pr 99.5 8.9E-11 1.9E-15 109.8 26.9 238 129-372 165-425 (428)
266 COG2706 3-carboxymuconate cycl 99.4 5.1E-09 1.1E-13 90.3 32.3 285 86-370 15-345 (346)
267 KOG2041 WD40 repeat protein [G 99.4 1.4E-10 3E-15 107.6 24.1 276 65-345 15-333 (1189)
268 PF04762 IKI3: IKI3 family; I 99.4 6.8E-09 1.5E-13 105.0 37.9 279 106-391 74-456 (928)
269 PLN02919 haloacid dehalogenase 99.4 1.2E-09 2.5E-14 112.5 32.4 240 69-311 572-891 (1057)
270 KOG2314 Translation initiation 99.4 7.6E-10 1.7E-14 99.9 26.9 272 111-391 214-525 (698)
271 KOG2315 Predicted translation 99.4 7.2E-10 1.6E-14 100.3 26.1 295 87-394 11-347 (566)
272 KOG4190 Uncharacterized conser 99.4 4.4E-12 9.6E-17 114.1 11.4 282 101-387 729-1032(1034)
273 KOG1912 WD40 repeat protein [G 99.4 2.9E-10 6.2E-15 106.4 23.2 308 65-375 16-481 (1062)
274 KOG0280 Uncharacterized conser 99.4 3.1E-10 6.7E-15 94.7 20.9 260 86-347 45-331 (339)
275 PF04762 IKI3: IKI3 family; I 99.4 8.6E-09 1.9E-13 104.2 35.6 323 64-391 75-519 (928)
276 KOG0280 Uncharacterized conser 99.4 3.9E-10 8.5E-15 94.1 21.3 224 163-389 87-331 (339)
277 TIGR03300 assembly_YfgL outer 99.4 2.9E-09 6.3E-14 98.7 29.6 264 119-393 65-340 (377)
278 KOG0309 Conserved WD40 repeat- 99.3 2.7E-11 5.9E-16 112.5 14.8 280 107-392 24-340 (1081)
279 PLN02919 haloacid dehalogenase 99.3 5.6E-09 1.2E-13 107.5 32.8 240 111-353 571-892 (1057)
280 KOG2041 WD40 repeat protein [G 99.3 6.9E-10 1.5E-14 103.1 23.2 276 108-390 15-336 (1189)
281 COG4946 Uncharacterized protei 99.3 1.6E-08 3.6E-13 89.9 29.4 304 72-392 327-655 (668)
282 COG2706 3-carboxymuconate cycl 99.3 5.6E-08 1.2E-12 84.0 30.5 264 128-391 15-321 (346)
283 PF08450 SGL: SMP-30/Gluconola 99.2 1.2E-07 2.6E-12 82.4 31.4 218 69-294 4-241 (246)
284 PRK11138 outer membrane biogen 99.2 4.7E-08 1E-12 91.1 30.5 298 80-390 72-393 (394)
285 KOG0882 Cyclophilin-related pe 99.2 6.2E-10 1.3E-14 98.1 16.3 280 63-346 8-369 (558)
286 KOG4532 WD40-like repeat conta 99.2 1.2E-08 2.5E-13 84.4 20.6 207 68-274 71-290 (344)
287 PRK04043 tolB translocation pr 99.2 5.5E-08 1.2E-12 90.6 27.3 211 87-309 169-401 (419)
288 PF13360 PQQ_2: PQQ-like domai 99.2 4.4E-08 9.5E-13 84.6 24.5 222 128-355 2-236 (238)
289 KOG0309 Conserved WD40 repeat- 99.1 3.3E-10 7.3E-15 105.4 11.3 237 67-308 70-339 (1081)
290 KOG3914 WD repeat protein WDR4 99.1 5.5E-10 1.2E-14 97.1 11.5 159 197-358 68-232 (390)
291 KOG3914 WD repeat protein WDR4 99.1 1.1E-09 2.5E-14 95.2 12.9 151 242-394 68-226 (390)
292 COG4946 Uncharacterized protei 99.1 3.8E-08 8.2E-13 87.7 22.4 213 116-336 275-505 (668)
293 PF08450 SGL: SMP-30/Gluconola 99.1 9.1E-07 2E-11 76.9 30.7 217 153-377 3-241 (246)
294 COG5170 CDC55 Serine/threonine 99.1 9.5E-09 2.1E-13 86.7 16.1 240 106-347 25-365 (460)
295 PF15492 Nbas_N: Neuroblastoma 99.0 4.3E-07 9.4E-12 76.3 24.5 238 113-361 3-271 (282)
296 KOG4532 WD40-like repeat conta 99.0 1.8E-07 3.9E-12 77.6 21.8 244 129-382 52-323 (344)
297 PF13360 PQQ_2: PQQ-like domai 99.0 3.8E-07 8.3E-12 78.7 24.3 219 86-312 2-234 (238)
298 PRK04043 tolB translocation pr 99.0 5.8E-07 1.3E-11 83.8 26.5 200 171-381 169-387 (419)
299 PF15492 Nbas_N: Neuroblastoma 99.0 2.3E-06 5E-11 72.1 26.8 229 155-394 3-262 (282)
300 KOG1832 HIV-1 Vpr-binding prot 99.0 6.4E-10 1.4E-14 105.6 6.0 263 100-379 1094-1377(1516)
301 PF00400 WD40: WD domain, G-be 99.0 2.1E-09 4.5E-14 64.0 6.1 39 351-389 1-39 (39)
302 PF00400 WD40: WD domain, G-be 98.9 3.2E-09 6.9E-14 63.2 5.9 38 98-135 2-39 (39)
303 PF07433 DUF1513: Protein of u 98.9 4E-06 8.7E-11 72.7 27.1 227 68-299 8-277 (305)
304 PF07433 DUF1513: Protein of u 98.9 7E-06 1.5E-10 71.2 28.5 240 111-382 8-277 (305)
305 KOG2695 WD40 repeat protein [G 98.9 5.9E-09 1.3E-13 89.1 8.7 159 114-276 218-386 (425)
306 KOG2066 Vacuolar assembly/sort 98.9 2.3E-07 5E-12 87.9 19.7 185 64-266 39-233 (846)
307 PRK11138 outer membrane biogen 98.9 1.7E-06 3.7E-11 80.7 25.8 264 119-392 69-354 (394)
308 KOG4714 Nucleoporin [Nuclear s 98.9 6.6E-08 1.4E-12 79.7 13.4 249 110-389 39-316 (319)
309 KOG4714 Nucleoporin [Nuclear s 98.9 8.2E-08 1.8E-12 79.2 13.6 164 57-222 82-255 (319)
310 KOG2695 WD40 repeat protein [G 98.9 9.1E-09 2E-13 88.0 8.3 161 68-230 215-385 (425)
311 KOG1832 HIV-1 Vpr-binding prot 98.9 2.3E-09 5.1E-14 101.9 5.1 219 55-294 1092-1317(1516)
312 cd00216 PQQ_DH Dehydrogenases 98.8 2.2E-05 4.8E-10 75.1 31.6 274 80-359 64-434 (488)
313 KOG0882 Cyclophilin-related pe 98.8 1.5E-07 3.3E-12 83.4 15.2 247 106-357 8-313 (558)
314 KOG3617 WD40 and TPR repeat-co 98.8 1.9E-07 4.1E-12 88.9 16.6 265 113-380 21-374 (1416)
315 COG5170 CDC55 Serine/threonine 98.8 6E-08 1.3E-12 82.0 11.6 234 149-393 26-311 (460)
316 KOG4649 PQQ (pyrrolo-quinoline 98.7 8.9E-05 1.9E-09 61.8 30.0 141 76-220 22-164 (354)
317 PRK02888 nitrous-oxide reducta 98.7 3E-05 6.5E-10 73.6 27.6 183 199-392 200-405 (635)
318 KOG1275 PAB-dependent poly(A) 98.7 5.5E-07 1.2E-11 86.5 15.5 181 118-306 146-340 (1118)
319 KOG1645 RING-finger-containing 98.7 3.2E-06 6.9E-11 74.2 17.4 253 131-392 175-462 (463)
320 KOG2114 Vacuolar assembly/sort 98.6 1.3E-05 2.8E-10 77.0 21.0 208 156-365 30-260 (933)
321 KOG1275 PAB-dependent poly(A) 98.6 1.6E-06 3.5E-11 83.4 15.0 182 78-265 148-341 (1118)
322 KOG1920 IkappaB kinase complex 98.6 6.6E-05 1.4E-09 75.0 26.2 235 108-350 69-323 (1265)
323 PF00930 DPPIV_N: Dipeptidyl p 98.6 0.00032 6.8E-09 64.4 28.8 281 86-378 22-344 (353)
324 KOG1920 IkappaB kinase complex 98.5 4E-05 8.7E-10 76.4 23.5 239 150-393 69-324 (1265)
325 cd00216 PQQ_DH Dehydrogenases 98.5 0.00029 6.3E-09 67.5 28.8 267 119-392 61-425 (488)
326 KOG2114 Vacuolar assembly/sort 98.5 6.3E-05 1.4E-09 72.4 23.1 195 114-311 30-246 (933)
327 KOG1645 RING-finger-containing 98.5 1.8E-05 4E-10 69.6 16.7 254 89-348 175-460 (463)
328 PF06433 Me-amine-dh_H: Methyl 98.4 0.00063 1.4E-08 60.1 25.8 267 87-360 17-331 (342)
329 PF06433 Me-amine-dh_H: Methyl 98.4 0.001 2.2E-08 58.7 27.5 256 129-393 17-322 (342)
330 KOG2066 Vacuolar assembly/sort 98.4 4.7E-05 1E-09 72.7 20.0 178 152-349 42-233 (846)
331 PRK02888 nitrous-oxide reducta 98.4 0.00043 9.3E-09 66.0 25.7 219 72-298 200-451 (635)
332 PF14583 Pectate_lyase22: Olig 98.4 0.0016 3.4E-08 58.7 28.0 272 114-391 42-381 (386)
333 COG3391 Uncharacterized conser 98.3 0.0024 5.1E-08 59.2 31.3 257 131-393 13-285 (381)
334 PF04053 Coatomer_WDAD: Coatom 98.3 0.00036 7.9E-09 65.2 23.4 218 150-391 33-262 (443)
335 PF11768 DUF3312: Protein of u 98.3 3.2E-05 6.9E-10 71.7 15.7 74 316-391 256-329 (545)
336 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.3 0.004 8.7E-08 60.1 34.0 278 80-360 72-501 (527)
337 KOG3617 WD40 and TPR repeat-co 98.3 2.4E-05 5.3E-10 75.0 14.8 70 67-137 62-131 (1416)
338 PF00780 CNH: CNH domain; Int 98.3 0.0022 4.9E-08 56.6 27.5 228 117-361 5-267 (275)
339 PF06977 SdiA-regulated: SdiA- 98.3 0.002 4.3E-08 55.3 24.9 200 102-304 16-246 (248)
340 PF04841 Vps16_N: Vps16, N-ter 98.3 0.0037 8E-08 58.4 30.4 244 88-359 62-324 (410)
341 KOG4649 PQQ (pyrrolo-quinoline 98.3 0.0017 3.7E-08 54.4 24.3 101 79-179 65-165 (354)
342 PF06977 SdiA-regulated: SdiA- 98.3 0.00078 1.7E-08 57.7 22.3 194 59-254 16-239 (248)
343 COG3391 Uncharacterized conser 98.2 0.0051 1.1E-07 57.0 29.7 201 110-312 76-287 (381)
344 KOG1008 Uncharacterized conser 98.1 1.1E-06 2.3E-11 81.6 2.5 195 151-349 58-275 (783)
345 PF08596 Lgl_C: Lethal giant l 98.1 0.0018 3.9E-08 59.8 23.5 227 66-297 3-325 (395)
346 PF04053 Coatomer_WDAD: Coatom 98.1 0.00086 1.9E-08 62.7 21.3 220 106-348 31-261 (443)
347 KOG1008 Uncharacterized conser 98.1 2.2E-06 4.8E-11 79.5 3.9 256 107-371 56-353 (783)
348 PF11768 DUF3312: Protein of u 98.1 1.8E-05 3.8E-10 73.4 9.5 75 106-182 258-332 (545)
349 COG0823 TolB Periplasmic compo 98.1 0.00063 1.4E-08 63.4 19.5 184 63-255 191-388 (425)
350 KOG3621 WD40 repeat-containing 98.1 0.00099 2.2E-08 63.2 20.1 117 106-222 32-155 (726)
351 COG3386 Gluconolactonase [Carb 98.1 0.0069 1.5E-07 53.9 24.6 215 71-293 31-270 (307)
352 PF08596 Lgl_C: Lethal giant l 98.0 0.0019 4.2E-08 59.6 20.7 235 151-394 3-293 (395)
353 KOG2444 WD40 repeat protein [G 98.0 1.2E-05 2.7E-10 65.7 5.5 142 249-393 31-179 (238)
354 PF14583 Pectate_lyase22: Olig 98.0 0.012 2.6E-07 53.2 26.9 272 71-346 42-378 (386)
355 PF04841 Vps16_N: Vps16, N-ter 97.9 0.018 4E-07 53.8 28.4 195 130-332 62-272 (410)
356 COG3386 Gluconolactonase [Carb 97.9 0.013 2.8E-07 52.1 23.9 217 156-378 31-272 (307)
357 smart00320 WD40 WD40 repeats. 97.9 4.4E-05 9.5E-10 44.1 5.6 38 98-135 3-40 (40)
358 smart00320 WD40 WD40 repeats. 97.9 4.9E-05 1.1E-09 43.9 5.7 39 351-389 2-40 (40)
359 COG0823 TolB Periplasmic compo 97.9 0.0047 1E-07 57.7 21.1 190 100-296 185-387 (425)
360 PF08553 VID27: VID27 cytoplas 97.8 0.0006 1.3E-08 67.4 15.2 139 248-389 493-645 (794)
361 PF02897 Peptidase_S9_N: Proly 97.8 0.039 8.4E-07 51.9 28.6 239 109-354 125-409 (414)
362 PF03178 CPSF_A: CPSF A subuni 97.8 0.015 3.3E-07 52.6 22.2 211 88-304 3-261 (321)
363 PHA02713 hypothetical protein; 97.7 0.0018 4E-08 63.0 16.7 188 76-269 303-536 (557)
364 PF08553 VID27: VID27 cytoplas 97.7 0.0016 3.4E-08 64.5 16.0 139 165-307 498-646 (794)
365 KOG3621 WD40 repeat-containing 97.7 0.00059 1.3E-08 64.6 12.0 118 150-267 34-155 (726)
366 KOG4640 Anaphase-promoting com 97.7 0.00028 6.1E-09 65.9 9.6 94 64-159 20-115 (665)
367 PF00930 DPPIV_N: Dipeptidyl p 97.6 0.029 6.2E-07 51.5 22.4 262 116-390 1-312 (353)
368 PHA02713 hypothetical protein; 97.6 0.0082 1.8E-07 58.5 19.5 213 88-309 273-534 (557)
369 KOG2395 Protein involved in va 97.6 0.0011 2.3E-08 61.0 12.2 136 250-389 348-498 (644)
370 PF02897 Peptidase_S9_N: Proly 97.6 0.064 1.4E-06 50.5 26.7 238 67-310 126-406 (414)
371 KOG2444 WD40 repeat protein [G 97.6 0.00014 3.1E-09 59.6 5.7 142 163-309 32-178 (238)
372 KOG4640 Anaphase-promoting com 97.6 0.00041 8.9E-09 64.9 9.3 93 150-245 21-114 (665)
373 PRK13616 lipoprotein LpqB; Pro 97.6 0.0088 1.9E-07 58.3 18.6 149 65-220 350-524 (591)
374 PF14783 BBS2_Mid: Ciliary BBS 97.6 0.0081 1.8E-07 43.9 13.7 101 67-174 2-109 (111)
375 PF14783 BBS2_Mid: Ciliary BBS 97.6 0.012 2.7E-07 43.0 14.6 91 249-345 16-110 (111)
376 PRK13616 lipoprotein LpqB; Pro 97.5 0.017 3.7E-07 56.3 20.2 186 105-303 347-563 (591)
377 COG3204 Uncharacterized protei 97.5 0.048 1E-06 47.0 20.3 170 103-273 81-269 (316)
378 KOG2079 Vacuolar assembly/sort 97.5 0.00052 1.1E-08 68.0 9.4 100 289-390 98-202 (1206)
379 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.5 0.12 2.5E-06 50.2 31.9 271 119-393 69-492 (527)
380 PF03178 CPSF_A: CPSF A subuni 97.5 0.0076 1.6E-07 54.6 16.1 172 213-391 2-202 (321)
381 KOG4441 Proteins containing BT 97.4 0.034 7.4E-07 54.2 21.0 218 77-301 285-534 (571)
382 KOG1897 Damage-specific DNA bi 97.4 0.16 3.5E-06 50.8 31.8 318 65-390 531-897 (1096)
383 KOG2395 Protein involved in va 97.4 0.0042 9.2E-08 57.3 12.6 141 163-307 348-499 (644)
384 PF00780 CNH: CNH domain; Int 97.3 0.1 2.2E-06 46.0 25.3 219 160-393 6-257 (275)
385 COG3490 Uncharacterized protei 97.2 0.11 2.5E-06 44.5 20.5 234 69-306 72-346 (366)
386 PHA03098 kelch-like protein; P 97.2 0.034 7.5E-07 54.2 18.4 185 77-268 295-513 (534)
387 PF14870 PSII_BNR: Photosynthe 97.2 0.15 3.2E-06 45.2 21.7 162 98-263 135-301 (302)
388 KOG2079 Vacuolar assembly/sort 97.1 0.0025 5.4E-08 63.5 9.0 101 163-265 101-202 (1206)
389 KOG4499 Ca2+-binding protein R 97.0 0.15 3.3E-06 42.5 17.4 94 195-288 161-263 (310)
390 KOG4441 Proteins containing BT 97.0 0.062 1.4E-06 52.5 17.8 185 77-268 333-548 (571)
391 PHA02790 Kelch-like protein; P 97.0 0.11 2.3E-06 50.0 18.9 183 76-268 271-472 (480)
392 COG3490 Uncharacterized protei 96.9 0.24 5.3E-06 42.6 23.7 268 66-347 36-346 (366)
393 PF10647 Gmad1: Lipoprotein Lp 96.8 0.33 7.1E-06 42.2 22.1 148 109-259 25-188 (253)
394 PF14655 RAB3GAP2_N: Rab3 GTPa 96.6 0.62 1.3E-05 43.3 26.0 81 279-359 308-408 (415)
395 PF12894 Apc4_WD40: Anaphase-p 96.5 0.012 2.7E-07 35.8 5.5 33 107-140 11-43 (47)
396 PF05096 Glu_cyclase_2: Glutam 96.4 0.52 1.1E-05 40.6 23.8 192 100-296 36-249 (264)
397 PRK10115 protease 2; Provision 96.4 1.2 2.6E-05 44.8 32.0 238 108-352 127-397 (686)
398 KOG3630 Nuclear pore complex, 96.3 0.057 1.2E-06 54.6 11.9 144 109-253 102-260 (1405)
399 PHA03098 kelch-like protein; P 96.3 0.46 9.9E-06 46.4 18.2 146 117-269 293-467 (534)
400 PF12894 Apc4_WD40: Anaphase-p 96.3 0.018 3.9E-07 35.1 5.3 34 319-353 11-44 (47)
401 TIGR03074 PQQ_membr_DH membran 96.2 1.7 3.7E-05 44.1 25.3 111 119-230 194-353 (764)
402 PF05694 SBP56: 56kDa selenium 96.0 1.2 2.6E-05 41.1 18.0 192 202-393 86-344 (461)
403 KOG4499 Ca2+-binding protein R 96.0 0.78 1.7E-05 38.4 18.7 133 239-372 111-264 (310)
404 KOG1916 Nuclear protein, conta 95.7 0.0056 1.2E-07 60.0 2.0 198 103-308 128-374 (1283)
405 PF14870 PSII_BNR: Photosynthe 95.7 1.4 3.1E-05 39.1 28.7 269 106-388 15-301 (302)
406 PF12234 Rav1p_C: RAVE protein 95.4 0.64 1.4E-05 45.4 14.7 108 280-389 31-154 (631)
407 KOG1897 Damage-specific DNA bi 95.4 3.5 7.6E-05 41.9 32.6 276 107-393 530-858 (1096)
408 TIGR03118 PEPCTERM_chp_1 conse 95.3 1.8 3.9E-05 38.0 24.4 217 152-371 25-307 (336)
409 KOG2377 Uncharacterized conser 95.2 0.89 1.9E-05 41.9 13.9 140 68-209 26-171 (657)
410 PF07995 GSDH: Glucose / Sorbo 95.2 2.3 5.1E-05 38.6 26.2 70 317-386 250-330 (331)
411 TIGR02604 Piru_Ver_Nterm putat 95.2 2.3 5.1E-05 39.2 17.5 141 109-255 15-202 (367)
412 TIGR02604 Piru_Ver_Nterm putat 95.1 1.8 4E-05 39.9 16.6 142 238-382 15-204 (367)
413 KOG3630 Nuclear pore complex, 94.9 0.63 1.4E-05 47.6 13.0 142 238-380 102-262 (1405)
414 KOG4460 Nuclear pore complex, 94.9 1.6 3.6E-05 40.9 14.7 26 109-134 105-130 (741)
415 PF10168 Nup88: Nuclear pore c 94.9 1 2.2E-05 45.2 14.7 26 108-133 85-110 (717)
416 PHA02790 Kelch-like protein; P 94.8 0.8 1.7E-05 44.0 13.7 141 76-223 318-472 (480)
417 PRK13684 Ycf48-like protein; P 94.8 3.1 6.8E-05 37.8 25.2 154 148-306 171-329 (334)
418 PF10647 Gmad1: Lipoprotein Lp 94.7 2.6 5.6E-05 36.7 23.9 146 151-300 25-187 (253)
419 TIGR03074 PQQ_membr_DH membran 94.7 5.7 0.00012 40.4 36.3 193 80-273 197-484 (764)
420 KOG2280 Vacuolar assembly/sort 94.5 5.4 0.00012 39.4 17.9 195 86-290 63-271 (829)
421 PF12234 Rav1p_C: RAVE protein 94.5 2.4 5.1E-05 41.6 15.6 113 151-265 31-155 (631)
422 PF05694 SBP56: 56kDa selenium 94.4 4.4 9.4E-05 37.6 22.2 192 77-268 88-344 (461)
423 COG5167 VID27 Protein involved 94.1 2 4.4E-05 40.3 13.5 138 79-221 482-632 (776)
424 PF15390 DUF4613: Domain of un 94.0 3.8 8.2E-05 39.3 15.2 147 66-221 21-186 (671)
425 PF15390 DUF4613: Domain of un 93.9 3.3 7.2E-05 39.7 14.8 150 107-266 19-186 (671)
426 COG3823 Glutamine cyclotransfe 93.9 3.1 6.7E-05 34.4 14.2 173 118-296 55-247 (262)
427 PF10313 DUF2415: Uncharacteri 93.8 0.36 7.9E-06 28.6 5.5 31 108-138 1-34 (43)
428 COG3204 Uncharacterized protei 93.8 4.3 9.3E-05 35.5 21.4 167 188-357 82-270 (316)
429 COG5167 VID27 Protein involved 93.8 1.9 4.2E-05 40.4 12.7 143 163-308 482-632 (776)
430 KOG2280 Vacuolar assembly/sort 93.8 7 0.00015 38.7 16.9 184 169-358 62-255 (829)
431 PF05096 Glu_cyclase_2: Glutam 93.7 4.2 9.1E-05 35.2 23.5 177 195-379 48-249 (264)
432 PLN02193 nitrile-specifier pro 93.6 7.1 0.00015 37.5 20.0 146 77-224 176-354 (470)
433 COG4257 Vgb Streptogramin lyas 93.5 4.6 0.0001 34.9 23.3 229 67-308 64-305 (353)
434 KOG1916 Nuclear protein, conta 93.5 0.097 2.1E-06 51.8 4.3 136 258-393 153-325 (1283)
435 PLN02153 epithiospecifier prot 93.5 6 0.00013 36.1 22.6 104 77-182 33-170 (341)
436 PRK13684 Ycf48-like protein; P 93.3 6.4 0.00014 35.8 30.3 264 107-389 45-329 (334)
437 TIGR03118 PEPCTERM_chp_1 conse 93.2 5.6 0.00012 35.0 24.1 208 66-276 24-289 (336)
438 PRK10115 protease 2; Provision 92.7 12 0.00027 37.7 31.0 238 66-310 128-396 (686)
439 PF10313 DUF2415: Uncharacteri 92.5 0.7 1.5E-05 27.4 5.4 31 192-222 1-34 (43)
440 PF12768 Rax2: Cortical protei 92.5 3.7 8E-05 36.1 12.4 75 85-159 14-98 (281)
441 PF14655 RAB3GAP2_N: Rab3 GTPa 92.0 2.1 4.5E-05 39.9 10.8 84 104-187 304-406 (415)
442 COG5276 Uncharacterized conser 91.9 8.1 0.00018 33.8 28.2 193 107-309 86-286 (370)
443 PF07569 Hira: TUP1-like enhan 91.8 1.6 3.5E-05 36.9 9.2 64 327-391 18-95 (219)
444 PF07995 GSDH: Glucose / Sorbo 91.7 10 0.00022 34.5 26.0 229 67-303 4-330 (331)
445 COG4257 Vgb Streptogramin lyas 91.6 8.4 0.00018 33.4 22.3 186 152-349 64-262 (353)
446 TIGR03547 muta_rot_YjhT mutatr 91.0 12 0.00026 34.1 20.8 54 117-170 62-128 (346)
447 PF08728 CRT10: CRT10; InterP 90.8 16 0.00034 36.6 15.7 103 161-265 114-245 (717)
448 PF10168 Nup88: Nuclear pore c 90.6 17 0.00037 36.8 16.2 70 238-308 86-179 (717)
449 PF12657 TFIIIC_delta: Transcr 90.5 2.6 5.6E-05 34.2 8.9 31 192-222 86-122 (173)
450 KOG1983 Tomosyn and related SN 90.5 11 0.00025 39.6 15.4 29 152-180 38-66 (993)
451 COG4590 ABC-type uncharacteriz 90.0 1.8 4E-05 39.9 8.1 165 145-312 216-390 (733)
452 PLN00033 photosystem II stabil 89.8 17 0.00037 33.9 18.1 154 107-262 238-396 (398)
453 PF14781 BBS2_N: Ciliary BBSom 89.7 7.6 0.00016 29.7 13.8 107 243-352 5-128 (136)
454 PF08728 CRT10: CRT10; InterP 89.7 4.6 0.0001 40.2 11.2 103 289-391 113-246 (717)
455 PF07250 Glyoxal_oxid_N: Glyox 89.6 5.9 0.00013 34.0 10.6 139 90-230 49-206 (243)
456 KOG2247 WD40 repeat-containing 89.6 0.056 1.2E-06 49.8 -1.6 144 111-260 38-182 (615)
457 KOG1900 Nuclear pore complex, 89.4 2.8 6.1E-05 43.9 9.7 141 168-309 96-273 (1311)
458 KOG2247 WD40 repeat-containing 89.1 0.068 1.5E-06 49.2 -1.5 133 195-334 38-174 (615)
459 PF07569 Hira: TUP1-like enhan 89.0 3.5 7.6E-05 34.9 8.8 63 286-349 18-95 (219)
460 PF14761 HPS3_N: Hermansky-Pud 88.5 13 0.00029 31.0 14.0 138 249-391 29-214 (215)
461 KOG2377 Uncharacterized conser 88.4 6.4 0.00014 36.6 10.3 97 236-334 66-168 (657)
462 KOG1900 Nuclear pore complex, 88.0 9.8 0.00021 40.2 12.4 167 52-222 67-273 (1311)
463 TIGR03548 mutarot_permut cycli 87.8 21 0.00044 32.3 20.4 106 118-224 72-197 (323)
464 PF07250 Glyoxal_oxid_N: Glyox 87.6 17 0.00037 31.2 13.4 84 174-257 49-138 (243)
465 TIGR03547 muta_rot_YjhT mutatr 87.5 23 0.00049 32.4 17.3 41 88-128 86-128 (346)
466 PF11715 Nup160: Nucleoporin N 87.4 2.8 6.1E-05 41.1 8.4 71 159-229 156-256 (547)
467 PF08801 Nucleoporin_N: Nup133 87.2 27 0.00058 33.0 15.8 31 320-350 190-220 (422)
468 PF13449 Phytase-like: Esteras 87.1 23 0.0005 32.1 16.9 144 150-294 20-230 (326)
469 TIGR02276 beta_rpt_yvtn 40-res 87.0 4.2 9.1E-05 23.5 6.5 40 329-369 1-41 (42)
470 PRK05560 DNA gyrase subunit A; 86.9 41 0.00089 34.8 19.7 191 200-393 495-723 (805)
471 KOG1983 Tomosyn and related SN 86.8 30 0.00064 36.7 15.5 29 109-137 37-65 (993)
472 PF11715 Nup160: Nucleoporin N 86.5 3.6 7.7E-05 40.4 8.5 37 322-358 217-257 (547)
473 PF07676 PD40: WD40-like Beta 86.0 4.6 0.0001 23.1 5.7 29 106-134 7-38 (39)
474 TIGR03548 mutarot_permut cycli 85.8 27 0.00058 31.5 16.8 65 118-182 123-197 (323)
475 TIGR02276 beta_rpt_yvtn 40-res 85.7 4.9 0.00011 23.2 5.8 32 74-105 1-32 (42)
476 PF10395 Utp8: Utp8 family; I 85.4 41 0.0009 33.4 14.9 164 107-275 129-314 (670)
477 PF07676 PD40: WD40-like Beta 85.1 5 0.00011 22.9 5.5 33 356-388 3-38 (39)
478 COG4590 ABC-type uncharacteriz 84.7 12 0.00025 34.9 10.0 236 151-392 117-387 (733)
479 KOG4460 Nuclear pore complex, 84.2 21 0.00046 34.0 11.5 72 238-309 105-199 (741)
480 PLN02193 nitrile-specifier pro 84.1 41 0.00089 32.3 18.7 143 77-224 229-413 (470)
481 PF14269 Arylsulfotran_2: Aryl 84.0 31 0.00067 30.8 15.9 162 209-389 21-218 (299)
482 PF13449 Phytase-like: Esteras 83.9 33 0.00072 31.1 16.6 144 192-336 20-231 (326)
483 PF05935 Arylsulfotrans: Aryls 83.9 42 0.00092 32.3 16.3 146 127-277 126-312 (477)
484 PF08801 Nucleoporin_N: Nup133 83.7 40 0.00086 31.8 16.7 30 238-267 191-220 (422)
485 PLN02153 epithiospecifier prot 83.6 35 0.00075 31.1 17.6 66 76-142 85-172 (341)
486 PF12657 TFIIIC_delta: Transcr 83.5 14 0.00031 29.8 9.5 29 321-349 87-121 (173)
487 PRK14131 N-acetylneuraminic ac 83.3 38 0.00083 31.4 16.9 41 88-128 107-149 (376)
488 PF10433 MMS1_N: Mono-function 82.9 48 0.001 32.2 20.8 243 116-371 219-503 (504)
489 PRK14131 N-acetylneuraminic ac 82.1 43 0.00092 31.0 19.9 54 117-170 83-149 (376)
490 PF05935 Arylsulfotrans: Aryls 81.6 52 0.0011 31.7 15.9 115 113-231 153-311 (477)
491 PF14761 HPS3_N: Hermansky-Pud 81.4 12 0.00025 31.3 8.0 48 332-380 29-78 (215)
492 COG3823 Glutamine cyclotransfe 80.9 31 0.00068 28.7 14.8 175 76-254 55-247 (262)
493 smart00564 PQQ beta-propeller 80.7 4.9 0.00011 21.8 4.1 26 332-357 7-32 (33)
494 TIGR03606 non_repeat_PQQ dehyd 80.2 56 0.0012 31.1 32.6 55 107-161 29-90 (454)
495 PF12768 Rax2: Cortical protei 79.9 42 0.00092 29.6 12.0 98 258-355 16-129 (281)
496 KOG3616 Selective LIM binding 78.8 76 0.0017 31.9 14.5 67 150-219 15-81 (1636)
497 PF01011 PQQ: PQQ enzyme repea 77.9 8.1 0.00017 22.1 4.5 27 333-359 2-28 (38)
498 COG1520 FOG: WD40-like repeat 74.2 73 0.0016 29.4 28.3 193 163-360 70-279 (370)
499 KOG3616 Selective LIM binding 73.9 9.9 0.00021 37.7 6.3 67 279-347 15-81 (1636)
500 TIGR01063 gyrA DNA gyrase, A s 73.4 1.2E+02 0.0026 31.5 20.5 194 198-394 491-721 (800)
No 1
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=7.4e-65 Score=425.89 Aligned_cols=386 Identities=41% Similarity=0.720 Sum_probs=336.2
Q ss_pred CCCCCCCcccccccccCCCcceeeeecCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeeccCCcEEEEEEcCCCCcEEEE
Q 016187 3 NPIHNEVEDDQREVFLDESDIIHEVTVDDEDLPDVDDDDDPGSDAENTEQPDDSTHIFSGHSDEVYSVACSPTDATLVAT 82 (394)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~las 82 (394)
++.+.+++++-+|+.++++|...+...+++++++.+++...+.++.-....+++.+.|.+|+++|++++.+| +.+++||
T Consensus 3 ~dee~iee~Evee~i~d~dd~~~e~~~~~e~E~e~~d~~~ddd~E~~~~~mDdS~~tF~~H~~svFavsl~P-~~~l~aT 81 (399)
T KOG0296|consen 3 GDEEFIEEEEVEEEILDEDDVAQEMVVDEEDENEQDDEMMDDDEEALEVDMDDSLVTFDKHTDSVFAVSLHP-NNNLVAT 81 (399)
T ss_pred chhhheehhhccccCCCchhhhhhcccccccccchhccccCCchHHhhcccccceeehhhcCCceEEEEeCC-CCceEEe
Confidence 344455555666667777777766666555555433332221111111122889999999999999999999 6889999
Q ss_pred ecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCC
Q 016187 83 GGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162 (394)
Q Consensus 83 g~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (394)
||.|...++|++.++++...+.+|++.|+++.||.+|.+||||..+|.|+||...++.....+...-..+.++.|||.++
T Consensus 82 GGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~ 161 (399)
T KOG0296|consen 82 GGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAH 161 (399)
T ss_pred cCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999888887788899999999999
Q ss_pred EEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEE
Q 016187 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCL 242 (394)
Q Consensus 163 ~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~ 242 (394)
+|++|+.||.+++|.+.++...+.+.||..++++..|.|+|++++++..||+|++||++++++++.+.+.. .....++
T Consensus 162 illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e--~~~~~~~ 239 (399)
T KOG0296|consen 162 ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAE--GLELPCI 239 (399)
T ss_pred EEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccc--cCcCCcc
Confidence 99999999999999999988889999999999999999999999999999999999999999998887543 3457788
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEec--------cCCCCEEE---EEECCCCCeEEEEeCCCcEEEEeCCCCC
Q 016187 243 TISADSTLALSGSKDGSVHMVNITTGKVVSSLV--------SHTDSIEC---IGFSRSSPWAATGSMDQKLIIWDLQHSL 311 (394)
Q Consensus 243 ~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~--------~h~~~i~~---v~~~~~~~~l~s~s~dg~i~iwd~~~~~ 311 (394)
.++..+..++.|+.++.+++.+..+|+.+.... .+...+.| +.++..-+++|+|+.||+|.|||+.+..
T Consensus 240 ~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~ 319 (399)
T KOG0296|consen 240 SLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST 319 (399)
T ss_pred ccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch
Confidence 999999999999999999999999999887765 34444444 4555566789999999999999999999
Q ss_pred cceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 312 PRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 312 ~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
.|..+.|+.+|+.+.|.+ ..+|++++.+|+|+.||+++|+++..+.||..+|.+++++|+.++++|+|.|++.++|+++
T Consensus 320 ~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 320 LRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred hheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 999999999999999999 7899999999999999999999999999999999999999999999999999999999976
Q ss_pred C
Q 016187 392 D 392 (394)
Q Consensus 392 ~ 392 (394)
.
T Consensus 399 ~ 399 (399)
T KOG0296|consen 399 N 399 (399)
T ss_pred C
Confidence 3
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.1e-61 Score=406.15 Aligned_cols=330 Identities=27% Similarity=0.486 Sum_probs=300.3
Q ss_pred CceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 016187 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW 134 (394)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vw 134 (394)
.+...+.||.++|.|++|+| ++..||||++|.++|+||+.+..+..+.++|...|.|++|+|||+.||+|+.||+|++|
T Consensus 106 rCssS~~GH~e~Vl~~~fsp-~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSP-TGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLW 184 (480)
T ss_pred eeccccCCCCCcEEEEEecC-CCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEe
Confidence 45667889999999999999 46689999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCceE-EEEecCCCCEEEEEEcC-----CCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEE
Q 016187 135 DPSSGNLK-CTLEGPGGGVEWVSWHP-----RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICT 208 (394)
Q Consensus 135 d~~~~~~~-~~~~~~~~~v~~~~~~~-----~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 208 (394)
|..+|+.+ ..+.+|...|++++|.| ...+|++++.||.++|||+..+.++..+.||..+|+|+.|--+ .++++
T Consensus 185 dpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliyS 263 (480)
T KOG0271|consen 185 DPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYS 263 (480)
T ss_pred cCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEe
Confidence 99998765 57899999999999987 3568999999999999999999999999999999999999754 48999
Q ss_pred EeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEc-----------CCCC-------------------------EEE
Q 016187 209 GSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTIS-----------ADST-------------------------LAL 252 (394)
Q Consensus 209 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~-----------~~~~-------------------------~l~ 252 (394)
|+.|++|++|+...|.....+++| ...|+.++.+ |.+. .++
T Consensus 264 gS~DrtIkvw~a~dG~~~r~lkGH---ahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlV 340 (480)
T KOG0271|consen 264 GSQDRTIKVWRALDGKLCRELKGH---AHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLV 340 (480)
T ss_pred cCCCceEEEEEccchhHHHhhccc---chheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeE
Confidence 999999999999999888888875 4456666554 3333 499
Q ss_pred EEeCCCcEEEEECCCC-cEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcc-eeccCCCCEEEEEEeCC
Q 016187 253 SGSKDGSVHMVNITTG-KVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPR-STCDHEDGVTCLMWLGT 330 (394)
Q Consensus 253 ~g~~dg~i~i~d~~~~-~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~ 330 (394)
+|+.|.++.+|+.... +++..+.+|..-|+.+.|||+++++|++|-|..|++|+.++.+.. .+.+|-..|..++|+.|
T Consensus 341 SgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaD 420 (480)
T KOG0271|consen 341 SGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSAD 420 (480)
T ss_pred EecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccC
Confidence 9999999999997654 588889999999999999999999999999999999999887544 45679999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 331 SKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 331 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
.++|++|+.|.++++|++++.++...+.||.+.|.++.|+|||..+++|+.|+.+++|.
T Consensus 421 sRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 421 SRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999995
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.8e-54 Score=364.11 Aligned_cols=292 Identities=27% Similarity=0.498 Sum_probs=266.8
Q ss_pred eeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEe
Q 016187 98 DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177 (394)
Q Consensus 98 ~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~ 177 (394)
.+...+.||.++|.|++|+|+|.+|+||+.|.++|+||+.+.....++++|...|.+++|+|+++.|++|+.||+|++||
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccce-eeeecccCcCeEEEEECC-----CCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEE
Q 016187 178 ADRAAY-LNMFSGHGSSVTCGDFTP-----DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLA 251 (394)
Q Consensus 178 ~~~~~~-~~~~~~h~~~v~~~~~~~-----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 251 (394)
..+++. .+.+.+|...|++++|.| ..++||+++.||+|+|||+..++++..+.+ |..+|+|+.|..+ .++
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsg---HT~~VTCvrwGG~-gli 261 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSG---HTASVTCVRWGGE-GLI 261 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEecc---CccceEEEEEcCC-ceE
Confidence 988754 467899999999999976 567999999999999999999999888876 5678999999865 478
Q ss_pred EEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEEC-----------CCCC-------------------------eEEE
Q 016187 252 LSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS-----------RSSP-------------------------WAAT 295 (394)
Q Consensus 252 ~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~-----------~~~~-------------------------~l~s 295 (394)
++|+.|++|++|+...|++.+.+.+|...|+.++++ |.+. .|++
T Consensus 262 ySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVS 341 (480)
T KOG0271|consen 262 YSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVS 341 (480)
T ss_pred EecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEE
Confidence 999999999999999999999999999999999877 2232 4999
Q ss_pred EeCCCcEEEEeCCCCC--cceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCC
Q 016187 296 GSMDQKLIIWDLQHSL--PRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQ 373 (394)
Q Consensus 296 ~s~dg~i~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~ 373 (394)
|+.|.++.+|+..... .....+|...|+.+.|+||++|+|+++.|.+|++|+.++|+.+.+|.||-++|..++|+.|.
T Consensus 342 gsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDs 421 (480)
T KOG0271|consen 342 GSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADS 421 (480)
T ss_pred ecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCc
Confidence 9999999999975432 23456899999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEeccCC
Q 016187 374 DFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 374 ~~l~s~s~dg~i~iw~~~~~ 393 (394)
++|+|||.|.++++|++..-
T Consensus 422 RLlVS~SkDsTLKvw~V~tk 441 (480)
T KOG0271|consen 422 RLLVSGSKDSTLKVWDVRTK 441 (480)
T ss_pred cEEEEcCCCceEEEEEeeee
Confidence 99999999999999998754
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2e-53 Score=363.16 Aligned_cols=282 Identities=27% Similarity=0.464 Sum_probs=267.0
Q ss_pred CcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCC--CCEEEEecCCCeEEEEeCCccc
Q 016187 105 GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPR--GHIVLAGSEDSTVWMWNADRAA 182 (394)
Q Consensus 105 ~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~s~d~~i~iw~~~~~~ 182 (394)
|-..+|..+.||+++..|+|||.+|.++||+..+...++++.+|.+.+.++.|+|. +..+++|+.||++++|++.+..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 45789999999999999999999999999999999999999999999999999997 5689999999999999999999
Q ss_pred eeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 016187 183 YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM 262 (394)
Q Consensus 183 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i 262 (394)
.+..+.+|...|..++|+|+|++|+|++.|.+-|+||+++++.+...++ |..+|.+++|.|||.++++|+.|..-+|
T Consensus 253 ~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEG---Hs~~v~~iaf~~DGSL~~tGGlD~~~Rv 329 (459)
T KOG0272|consen 253 PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEG---HSKGVFSIAFQPDGSLAATGGLDSLGRV 329 (459)
T ss_pred chhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcc---cccccceeEecCCCceeeccCccchhhe
Confidence 9999999999999999999999999999999999999999887666555 6788999999999999999999999999
Q ss_pred EECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcce-eccCCCCEEEEEEeC-CCCEEEEEeCC
Q 016187 263 VNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRS-TCDHEDGVTCLMWLG-TSKYVVTGCVD 340 (394)
Q Consensus 263 ~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~v~~~~~~~-~~~~l~sg~~d 340 (394)
||+++|+++..+.+|..+|.+|+|+|+|..|||||.|++++|||++...... ...|..-|+.+.|.| .|.+|+|++.|
T Consensus 330 WDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD 409 (459)
T KOG0272|consen 330 WDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYD 409 (459)
T ss_pred eecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccC
Confidence 9999999999999999999999999999999999999999999998765544 347889999999998 78899999999
Q ss_pred CeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 341 GKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 341 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
++++||..+++.+++++.||.+.|.++.+++|+++++|+|.|+++++|.
T Consensus 410 ~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 410 NTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999999999999999999999999999999999999999999995
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.3e-51 Score=350.59 Aligned_cols=283 Identities=25% Similarity=0.411 Sum_probs=267.8
Q ss_pred eccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCC--CCEEEEEeCCCcEEEEeCCC
Q 016187 61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD--GQLLASGGLDGLVQIWDPSS 138 (394)
Q Consensus 61 ~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~--g~~l~t~s~d~~i~vwd~~~ 138 (394)
.|.+.+|..+.|++ ++..||||+-+|.++||+..+...+.+|.||+..|.++.|+|. +..||||+.||++++|++.+
T Consensus 172 ~gd~rPis~~~fS~-ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 172 VGDTRPISGCSFSR-DSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ 250 (459)
T ss_pred ccCCCcceeeEeec-CCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence 36678999999998 5678999999999999999999999999999999999999997 56899999999999999999
Q ss_pred CceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEE
Q 016187 139 GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVW 218 (394)
Q Consensus 139 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vw 218 (394)
...+..+.+|...|..++|||+|++|++++.|.+-++||+.++..+....||...|.+++|.|||.+++||+.|..-|||
T Consensus 251 e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvW 330 (459)
T KOG0272|consen 251 ETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVW 330 (459)
T ss_pred CcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhee
Confidence 88999999999999999999999999999999999999999998888889999999999999999999999999999999
Q ss_pred cCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECC-CCCeEEEEe
Q 016187 219 NPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSR-SSPWAATGS 297 (394)
Q Consensus 219 d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~-~~~~l~s~s 297 (394)
|+++++++..+.+ |...|..+.|+|+|..+++|+.|++++|||++..+.+.++.+|..-|+.|.|+| .|.+|+|++
T Consensus 331 DlRtgr~im~L~g---H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tas 407 (459)
T KOG0272|consen 331 DLRTGRCIMFLAG---HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTAS 407 (459)
T ss_pred ecccCcEEEEecc---cccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcc
Confidence 9999999999887 678899999999999999999999999999999999999999999999999998 688999999
Q ss_pred CCCcEEEEeCCCCCcc-eeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 016187 298 MDQKLIIWDLQHSLPR-STCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWD 347 (394)
Q Consensus 298 ~dg~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd 347 (394)
.|++++||...+..+. ...+|+..|.+++++++++++++++.|.++++|.
T Consensus 408 yD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 408 YDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999998877554 4568999999999999999999999999999995
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2e-49 Score=324.04 Aligned_cols=286 Identities=26% Similarity=0.459 Sum_probs=267.0
Q ss_pred eEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCC
Q 016187 100 ASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179 (394)
Q Consensus 100 ~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~ 179 (394)
.++|+||...|.++.|++|+++|+++|.||.+.|||.-+....+.++.+...|..++|+|.++++++|+.|+...||++.
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cc------ceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcC-CCCEEE
Q 016187 180 RA------AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-DSTLAL 252 (394)
Q Consensus 180 ~~------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~ 252 (394)
+. +..+.+.+|.+.+.|+.|.+| ..|++++.|.++.+||+++++.+..+.+ |...|.+++++| +++.++
T Consensus 128 ~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~G---H~gDV~slsl~p~~~ntFv 203 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHG---HTGDVMSLSLSPSDGNTFV 203 (343)
T ss_pred cccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecC---CcccEEEEecCCCCCCeEE
Confidence 54 456778999999999999985 5788999999999999999999988887 567899999999 999999
Q ss_pred EEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCC---CCEEEEEEeC
Q 016187 253 SGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHE---DGVTCLMWLG 329 (394)
Q Consensus 253 ~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~~~ 329 (394)
+|+-|+..++||++.+.+.+++.+|+..|++|.|.|+|.-+++|+.|++.++||++.........|. .+|++++|+.
T Consensus 204 Sg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~ 283 (343)
T KOG0286|consen 204 SGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSK 283 (343)
T ss_pred ecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcc
Confidence 9999999999999999999999999999999999999999999999999999999876554444443 5799999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 330 TSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 330 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
.|++|++|..|.++.+||...++.+..|.||.+.|.+|..+|||..|+|||.|.++|||.
T Consensus 284 SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 284 SGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 999999999999999999999999999999999999999999999999999999999994
No 7
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=5.4e-47 Score=327.93 Aligned_cols=335 Identities=26% Similarity=0.505 Sum_probs=294.6
Q ss_pred CCCCCCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeee----Eeec------C----cccCEEEEEE
Q 016187 50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA----SEIQ------G----HKDSVSSLAF 115 (394)
Q Consensus 50 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~----~~~~------~----h~~~V~~v~~ 115 (394)
.++|.....++. |+.+|++.+|+|....++|+|+.|.+.++|++...... ..|+ + -...|++++|
T Consensus 165 ~~I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~W 243 (524)
T KOG0273|consen 165 VEIPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDW 243 (524)
T ss_pred ccccccceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEe
Confidence 345555555555 99999999999976668999999999999998641111 1111 1 2357999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeE
Q 016187 116 SMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVT 195 (394)
Q Consensus 116 s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~ 195 (394)
+.+|..||+|+.||.+++|+. +|.+..++..|.++|.+++|+..|.+|++++.|+++.+||..++...+.+.-|..+-.
T Consensus 244 n~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~l 322 (524)
T KOG0273|consen 244 NNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPAL 322 (524)
T ss_pred cCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCcc
Confidence 999999999999999999985 5777888999999999999999999999999999999999999999999999988867
Q ss_pred EEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 016187 196 CGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV 275 (394)
Q Consensus 196 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~ 275 (394)
.+.|-.+ ..+++++.|+.|+|+.+....+..++.+ |...|.++.|.|.+.+|++++.|++++||++........+.
T Consensus 323 DVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~G---H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~ 398 (524)
T KOG0273|consen 323 DVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIG---HHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ 398 (524)
T ss_pred ceEEecC-ceEeecCCCceEEEEEecCCCcceeeec---ccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhh
Confidence 7788644 5689999999999999988888888776 57789999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEECCCCC---------eEEEEeCCCcEEEEeCCCCCccee-ccCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 016187 276 SHTDSIECIGFSRSSP---------WAATGSMDQKLIIWDLQHSLPRST-CDHEDGVTCLMWLGTSKYVVTGCVDGKVRV 345 (394)
Q Consensus 276 ~h~~~i~~v~~~~~~~---------~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~sg~~dg~i~i 345 (394)
+|...|..+.|+|.++ .+++++.|++|++||+....+... ..|..+|.+++|+|+++|+|+|+.||.|.+
T Consensus 399 ~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~i 478 (524)
T KOG0273|consen 399 AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHI 478 (524)
T ss_pred hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEe
Confidence 9999999999999753 589999999999999988776655 489999999999999999999999999999
Q ss_pred EECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 346 WDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 346 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
|+.++++.++.+.+ .+.|..|.|+.+|.+|..+-.|+.+++-|+.
T Consensus 479 ws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 479 WSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred ccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 99999999999987 5569999999999999999999999998864
No 8
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=5.3e-46 Score=325.81 Aligned_cols=337 Identities=25% Similarity=0.447 Sum_probs=289.5
Q ss_pred CCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 016187 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI 133 (394)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~v 133 (394)
..+.-.+.||...|+++.|-|..+..++|||.|.+|-++.-.-.++..+++.|...|+|+.|+|||.++||++.||++.+
T Consensus 137 G~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~i 216 (603)
T KOG0318|consen 137 GNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYI 216 (603)
T ss_pred CCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEE
Confidence 45566788999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred EeCCCCceEEEEe---cCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcccee--------------------------
Q 016187 134 WDPSSGNLKCTLE---GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL-------------------------- 184 (394)
Q Consensus 134 wd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~-------------------------- 184 (394)
||-.+|+.+..+. .|.+.|..++|+|++..++++|.|.+++|||+.+.+++
T Consensus 217 yDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItV 296 (603)
T KOG0318|consen 217 YDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITV 296 (603)
T ss_pred EcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEE
Confidence 9999999999987 89999999999999999999999999999998654432
Q ss_pred -----------------eeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceE-----------EEEcC-----
Q 016187 185 -----------------NMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENI-----------HVIRG----- 231 (394)
Q Consensus 185 -----------------~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-----------~~~~~----- 231 (394)
+.+.||...|+++..+|++++|++|+.||.|.-|+..++..- ..+..
T Consensus 297 Sl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~ 376 (603)
T KOG0318|consen 297 SLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGE 376 (603)
T ss_pred EcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCc
Confidence 234689999999999999999999999999999998655321 00000
Q ss_pred ----------------------C--------CC--------------------------------cccCeEEEEEcCCCC
Q 016187 232 ----------------------H--------PY--------------------------------HTEGLTCLTISADST 249 (394)
Q Consensus 232 ----------------------~--------~~--------------------------------~~~~i~~~~~~~~~~ 249 (394)
+ |. ......+++++|++.
T Consensus 377 ~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~ 456 (603)
T KOG0318|consen 377 LFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGS 456 (603)
T ss_pred EEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCC
Confidence 0 00 001245678899999
Q ss_pred EEEEEeCCCcEEEEECCCCcEE--EEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcce--eccCCCCEEEE
Q 016187 250 LALSGSKDGSVHMVNITTGKVV--SSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRS--TCDHEDGVTCL 325 (394)
Q Consensus 250 ~l~~g~~dg~i~i~d~~~~~~~--~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~v~~~ 325 (394)
.+++|+.|+.|++|.+..+... ..+..|.++|+++++||++.|||++...+++.+||........ ..-|...|.|+
T Consensus 457 ~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~ 536 (603)
T KOG0318|consen 457 EVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCV 536 (603)
T ss_pred EEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEE
Confidence 9999999999999999875533 3456799999999999999999999999999999998765432 23489999999
Q ss_pred EEeCCCCEEEEEeCCCeEEEEECCCCe-EEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 326 MWLGTSKYVVTGCVDGKVRVWDSLSGD-CVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 326 ~~~~~~~~l~sg~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
+|+|+..++|+|+.|..|.||++.... .+.....|...|+.|.|- +...|+|.|.|..||+|++.
T Consensus 537 aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wl-de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 537 AWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWL-DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred EeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEe-cCceEEeccCcceeEEeccc
Confidence 999999999999999999999986543 344556899999999996 66889999999999999975
No 9
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.6e-45 Score=301.14 Aligned_cols=291 Identities=23% Similarity=0.407 Sum_probs=264.0
Q ss_pred CCCCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcE
Q 016187 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV 131 (394)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i 131 (394)
.......+++||.+.|+++.|++ ++++|+|++.||.+.|||.-+......++-....|..++|+|.|+++|.|+.|...
T Consensus 43 i~~~~rr~LkGH~~Ki~~~~ws~-Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~C 121 (343)
T KOG0286|consen 43 IQMRTRRTLKGHLNKIYAMDWST-DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKC 121 (343)
T ss_pred eeeeeEEEecccccceeeeEecC-CcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCcee
Confidence 34556789999999999999999 57789999999999999988877777788888999999999999999999999999
Q ss_pred EEEeCCCC------ceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECC-CCC
Q 016187 132 QIWDPSSG------NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP-DGK 204 (394)
Q Consensus 132 ~vwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~-~~~ 204 (394)
.||++.+. +....+.+|.+.+.++.|-+ ...|+++|.|.+..+||+++++.+..|.||.+.|.+++++| +++
T Consensus 122 siy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n 200 (343)
T KOG0286|consen 122 SIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN 200 (343)
T ss_pred EEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC
Confidence 99999865 34567889999999999998 45689999999999999999999999999999999999999 999
Q ss_pred eEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEecc--CCCCEE
Q 016187 205 TICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS--HTDSIE 282 (394)
Q Consensus 205 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~--h~~~i~ 282 (394)
.+++|+.|++.++||++.+.+.+.+.+ |...|+++.|.|+|.-+++|+.|++.++||++..+.+..+.. -..+|+
T Consensus 201 tFvSg~cD~~aklWD~R~~~c~qtF~g---hesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~git 277 (343)
T KOG0286|consen 201 TFVSGGCDKSAKLWDVRSGQCVQTFEG---HESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGIT 277 (343)
T ss_pred eEEecccccceeeeeccCcceeEeecc---cccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCce
Confidence 999999999999999999999999887 567899999999999999999999999999999988877653 245799
Q ss_pred EEEECCCCCeEEEEeCCCcEEEEeCCCC-CcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 016187 283 CIGFSRSSPWAATGSMDQKLIIWDLQHS-LPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWD 347 (394)
Q Consensus 283 ~v~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd 347 (394)
+++||..|++|..|..|.++.+||.-+. ......+|+..|+|+..+|+|.-|++||.|..++||.
T Consensus 278 Sv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 278 SVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 9999999999999999999999997554 3445678999999999999999999999999999994
No 10
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-45 Score=298.43 Aligned_cols=289 Identities=25% Similarity=0.453 Sum_probs=250.1
Q ss_pred ceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCC-----CeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCc
Q 016187 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-----GDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGL 130 (394)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~-----~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~ 130 (394)
...++.+|++.|+.++..+.+..++.+++.|.++.+|++.. |...+.+.||...|..+..++||++.+++|.|++
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~ 86 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT 86 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce
Confidence 35678899999999999998888999999999999999764 4567889999999999999999999999999999
Q ss_pred EEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecc-cCcCeEEEEECCC--CCeEE
Q 016187 131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG-HGSSVTCGDFTPD--GKTIC 207 (394)
Q Consensus 131 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~-h~~~v~~~~~~~~--~~~l~ 207 (394)
+++||+.+|+....+.+|...|.+++|++++..+++||.|.+|++|++........... +...|+|+.|+|+ ..+|+
T Consensus 87 lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Iv 166 (315)
T KOG0279|consen 87 LRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIV 166 (315)
T ss_pred EEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEE
Confidence 99999999999999999999999999999999999999999999999876654443333 3789999999997 67999
Q ss_pred EEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEEC
Q 016187 208 TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS 287 (394)
Q Consensus 208 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~ 287 (394)
+++.|++|++||+++.+....+. .|...++.+.++|||.+.++|+.||.+.+||++.++.+.++ .|...|.+++|+
T Consensus 167 s~s~DktvKvWnl~~~~l~~~~~---gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl-~a~~~v~sl~fs 242 (315)
T KOG0279|consen 167 SASWDKTVKVWNLRNCQLRTTFI---GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL-EAFDIVNSLCFS 242 (315)
T ss_pred EccCCceEEEEccCCcchhhccc---cccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec-cCCCeEeeEEec
Confidence 99999999999998876555544 46778999999999999999999999999999999998776 478999999999
Q ss_pred CCCCeEEEEeCCCcEEEEeCCCCCcceec-----cC-----CCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 016187 288 RSSPWAATGSMDQKLIIWDLQHSLPRSTC-----DH-----EDGVTCLMWLGTSKYVVTGCVDGKVRVWDSL 349 (394)
Q Consensus 288 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-----~~-----~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~ 349 (394)
|+..+|+.+. +..|+|||+......... +. .....+++|+++|+.|++|-.|+.|++|.+.
T Consensus 243 pnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 243 PNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred CCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 9988877654 445999999765433211 11 2234678999999999999999999999764
No 11
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.7e-45 Score=297.24 Aligned_cols=292 Identities=23% Similarity=0.388 Sum_probs=258.3
Q ss_pred eeeEeecCcccCEEEEEEcCCC-CEEEEEeCCCcEEEEeCC-----CCceEEEEecCCCCEEEEEEcCCCCEEEEecCCC
Q 016187 98 DWASEIQGHKDSVSSLAFSMDG-QLLASGGLDGLVQIWDPS-----SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS 171 (394)
Q Consensus 98 ~~~~~~~~h~~~V~~v~~s~~g-~~l~t~s~d~~i~vwd~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~ 171 (394)
.+..++++|++.|++++..+.+ +.|++++.|.++.+|++. .|..+..+.+|...|..+..++++++.++++.|+
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~ 85 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG 85 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence 4556899999999999999874 688999999999999875 4566788999999999999999999999999999
Q ss_pred eEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCC--CC
Q 016187 172 TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD--ST 249 (394)
Q Consensus 172 ~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~ 249 (394)
++++||+.+++..+.|.||...|.+++|+||.+.+++|+.|.+|++|++..+. ..++.... +.+-|+|+.|+|. ..
T Consensus 86 ~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c-k~t~~~~~-~~~WVscvrfsP~~~~p 163 (315)
T KOG0279|consen 86 TLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC-KYTIHEDS-HREWVSCVRFSPNESNP 163 (315)
T ss_pred eEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccE-EEEEecCC-CcCcEEEEEEcCCCCCc
Confidence 99999999999999999999999999999999999999999999999987544 44443322 2678999999998 78
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeC
Q 016187 250 LALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLG 329 (394)
Q Consensus 250 ~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~ 329 (394)
++++++.|+++++||+++.+....+.+|+..++.+.+||||.++++|+.||.+.+||+..........|...|.+++|+|
T Consensus 164 ~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fsp 243 (315)
T KOG0279|consen 164 IIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSP 243 (315)
T ss_pred EEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999888878888999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEee----cc-----cCceeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 330 TSKYVVTGCVDGKVRVWDSLSGDCVRTFS----GH-----RDAIQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 330 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~----~h-----~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
+.-.|+. ..+..|+|||+.++.++..++ +. .-...+++|++||..|++|-.|+.|++|.+.-
T Consensus 244 nrywL~~-at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 244 NRYWLCA-ATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred CceeEee-ccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEeec
Confidence 8655554 456669999999999887664 22 22246789999999999999999999999864
No 12
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.9e-44 Score=287.46 Aligned_cols=291 Identities=24% Similarity=0.390 Sum_probs=259.4
Q ss_pred CCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc--eEEEEecCCCCEE
Q 016187 76 DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN--LKCTLEGPGGGVE 153 (394)
Q Consensus 76 ~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~--~~~~~~~~~~~v~ 153 (394)
..-+|+|+|.|.+||+|...+|.+.++++.....|..+.+.|+++.||+|+. ..||+||+++++ .+.++.+|...|.
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVT 87 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceE
Confidence 4568999999999999999999999999977788999999999999998875 579999999875 5789999999999
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCC
Q 016187 154 WVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHP 233 (394)
Q Consensus 154 ~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 233 (394)
.+.|+.+|+.+++|+.||+++|||++...+.+.+ .|.++|+++..+|+...|++|..+|.|++||+....+...+- +
T Consensus 88 aVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li--P 164 (311)
T KOG0315|consen 88 AVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI--P 164 (311)
T ss_pred EEEEeecCeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC--C
Confidence 9999999999999999999999999986666655 477999999999999999999999999999998876655443 3
Q ss_pred CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC------cEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 016187 234 YHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG------KVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDL 307 (394)
Q Consensus 234 ~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~------~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~ 307 (394)
.....+.++.+.|+|++++++...|..++|++... +++.+++.|...+..+.+||++++||++|.|.+++||++
T Consensus 165 e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~ 244 (311)
T KOG0315|consen 165 EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNT 244 (311)
T ss_pred CCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEec
Confidence 34567999999999999999999999999998764 356778899999999999999999999999999999999
Q ss_pred CCCC--cceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEc
Q 016187 308 QHSL--PRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVS 370 (394)
Q Consensus 308 ~~~~--~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~ 370 (394)
.... .....+|...+..++|+.+++||++|+.|+.+++|++..++.++.+.||.....+++..
T Consensus 245 ~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 245 DDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred CCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 8762 23345788889999999999999999999999999999999999999999888787764
No 13
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.2e-45 Score=332.64 Aligned_cols=332 Identities=25% Similarity=0.445 Sum_probs=285.9
Q ss_pred eeeeec-cCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCC--EEEEEeCCCcEEE
Q 016187 57 THIFSG-HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ--LLASGGLDGLVQI 133 (394)
Q Consensus 57 ~~~~~~-h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~--~l~t~s~d~~i~v 133 (394)
.....+ |++||..++|+|.+ .++|+||.|+.++|||+..+.+...|+||.+.|.++.|+|+-. .|++|+.|+++++
T Consensus 97 irswKa~He~Pvi~ma~~~~g-~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~v 175 (775)
T KOG0319|consen 97 IRSWKAIHEAPVITMAFDPTG-TLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRV 175 (775)
T ss_pred hHhHhhccCCCeEEEEEcCCC-ceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEE
Confidence 333455 99999999999975 8999999999999999999999999999999999999999865 5899999999999
Q ss_pred EeCCCCce-EEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccce-----------------------------
Q 016187 134 WDPSSGNL-KCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY----------------------------- 183 (394)
Q Consensus 134 wd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~----------------------------- 183 (394)
||+.+... +.++..|...|++++|.+++..+++++.|..+.+||+.+.+.
T Consensus 176 wnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~T 255 (775)
T KOG0319|consen 176 WNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIIT 255 (775)
T ss_pred EEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEE
Confidence 99986654 667778888899999998888888888888888887532100
Q ss_pred --------------------------------------------------------------------------------
Q 016187 184 -------------------------------------------------------------------------------- 183 (394)
Q Consensus 184 -------------------------------------------------------------------------------- 183 (394)
T Consensus 256 aG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e 335 (775)
T KOG0319|consen 256 AGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPE 335 (775)
T ss_pred ecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCc
Confidence
Q ss_pred ----------------------eeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCc-----------------
Q 016187 184 ----------------------LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE----------------- 224 (394)
Q Consensus 184 ----------------------~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~----------------- 224 (394)
-+.+.||...|.+++...+|-+|+||+.|.++++|.+..+.
T Consensus 336 ~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svg 415 (775)
T KOG0319|consen 336 ESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVG 415 (775)
T ss_pred cceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccc
Confidence 00114777778888866677899999999999999663221
Q ss_pred -------------------eEEEEc--C---------------CCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 016187 225 -------------------NIHVIR--G---------------HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG 268 (394)
Q Consensus 225 -------------------~~~~~~--~---------------~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~ 268 (394)
.++.+. . ...|...|+|++++|+.+++++|+.|.+.++|++...
T Consensus 416 ava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~ 495 (775)
T KOG0319|consen 416 AVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL 495 (775)
T ss_pred eeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc
Confidence 001100 0 1136778999999999999999999999999999999
Q ss_pred cEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceec-cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 016187 269 KVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTC-DHEDGVTCLMWLGTSKYVVTGCVDGKVRVWD 347 (394)
Q Consensus 269 ~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd 347 (394)
+.+..+.+|+..|.||.|+|..+.+||+|.|.+|+||.+.+..+.... +|...|..+.|-.++..|++++.||.|++|+
T Consensus 496 ~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWn 575 (775)
T KOG0319|consen 496 RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWN 575 (775)
T ss_pred eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEe
Confidence 999999999999999999999999999999999999999988776554 6999999999999999999999999999999
Q ss_pred CCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 348 SLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 348 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
+.+..|+.++.+|++.|++++.++...+++||+.||.|.+|.
T Consensus 576 ikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 576 IKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred ccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 999999999999999999999999999999999999999995
No 14
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.7e-43 Score=320.67 Aligned_cols=337 Identities=23% Similarity=0.365 Sum_probs=294.2
Q ss_pred CCCCCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCee--eEeecCcccCEEEEEEcCCCCEEEEEeCC
Q 016187 51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW--ASEIQGHKDSVSSLAFSMDGQLLASGGLD 128 (394)
Q Consensus 51 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~--~~~~~~h~~~V~~v~~s~~g~~l~t~s~d 128 (394)
..|-....++.||-+.|.+|.|+. +.++|++|+.|.++++|.+...+- ...+.||+++|-++-|..+...|.|.+.|
T Consensus 132 ~~pFvl~r~~~g~fddi~si~Ws~-DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskd 210 (893)
T KOG0291|consen 132 FNPFVLHRTYLGHFDDITSIDWSD-DSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKD 210 (893)
T ss_pred cCcceEeeeecCCccceeEEEecc-CCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecC
Confidence 445566788899999999999996 689999999999999999876554 56789999999999999999999999999
Q ss_pred CcEEEEeCCC-----------------------Cce-----------EEEEecCCCCEEEEEEcCCCCEEEEecCCCeEE
Q 016187 129 GLVQIWDPSS-----------------------GNL-----------KCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174 (394)
Q Consensus 129 ~~i~vwd~~~-----------------------~~~-----------~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~ 174 (394)
|.+.+|.... ++. .+-+......+++.+||+..+.|++|-..|.+.
T Consensus 211 G~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~ 290 (893)
T KOG0291|consen 211 GALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFG 290 (893)
T ss_pred ceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeE
Confidence 9999997651 111 011122336799999999999999999999999
Q ss_pred EEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCC-CcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEE
Q 016187 175 MWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD-ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALS 253 (394)
Q Consensus 175 iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 253 (394)
+|.+.....++.+.-...+|..++|+..|.+||.|+.. |.+-||+..+..-+.... .|...+++++++|||+++++
T Consensus 291 LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQ---gH~~~i~~l~YSpDgq~iaT 367 (893)
T KOG0291|consen 291 LYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQ---GHSDRITSLAYSPDGQLIAT 367 (893)
T ss_pred EEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecc---ccccceeeEEECCCCcEEEe
Confidence 99999999998888888899999999999999988775 899999998766554443 36778999999999999999
Q ss_pred EeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCC--CEEEEEEeCCC
Q 016187 254 GSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHED--GVTCLMWLGTS 331 (394)
Q Consensus 254 g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~v~~~~~~~~~ 331 (394)
|+.||+|++||..++-++.++..|+..|+.+.|+..+..++++|.||+|+.||+.....-.....+. ...|++-.|.|
T Consensus 368 G~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sG 447 (893)
T KOG0291|consen 368 GAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSG 447 (893)
T ss_pred ccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCC
Confidence 9999999999999999999999999999999999999999999999999999997665444433333 35788888999
Q ss_pred CEEEEEeCCC-eEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 332 KYVVTGCVDG-KVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 332 ~~l~sg~~dg-~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
..+.+|+.|. .|++|++.||+++..+.||.+||.+++|+|++..|+|+|+|.+||+|++-
T Consensus 448 elV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if 508 (893)
T KOG0291|consen 448 ELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIF 508 (893)
T ss_pred CEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEee
Confidence 9999998875 69999999999999999999999999999999999999999999999963
No 15
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2e-43 Score=321.46 Aligned_cols=328 Identities=20% Similarity=0.378 Sum_probs=294.9
Q ss_pred ccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCC-CcEEEEeCCCCc
Q 016187 62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD-GLVQIWDPSSGN 140 (394)
Q Consensus 62 ~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d-~~i~vwd~~~~~ 140 (394)
.....|++.+||| +..+||+|-..|...++.+....++..+.--..+|..++|+..|..||.|+.. |.+-||+..+..
T Consensus 263 ~~~~kvtaa~fH~-~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs 341 (893)
T KOG0291|consen 263 QNSSKVTAAAFHK-GTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES 341 (893)
T ss_pred ccccceeeeeccC-CceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccc
Confidence 3347899999999 67899999999999999999999999988777899999999999999988754 899999999988
Q ss_pred eEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcC
Q 016187 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP 220 (394)
Q Consensus 141 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 220 (394)
.+.+.++|...+++++++|+|.++++|+.||.|++||..++-++.+|..|.+.|+.+.|+..|+.+++.+.||+||.||+
T Consensus 342 YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDl 421 (893)
T KOG0291|consen 342 YVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDL 421 (893)
T ss_pred eeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeee
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCC-cEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCC
Q 016187 221 KSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG-SVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMD 299 (394)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg-~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~d 299 (394)
...++.+++... ......|++..|.|.++.+|+.|. .|++|++++|+++..+.+|++||.++.|+|.+..||++|.|
T Consensus 422 kRYrNfRTft~P--~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWD 499 (893)
T KOG0291|consen 422 KRYRNFRTFTSP--EPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWD 499 (893)
T ss_pred cccceeeeecCC--CceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecccc
Confidence 998888877643 223467899999999999999886 69999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCC-CcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeec-------------------
Q 016187 300 QKLIIWDLQHS-LPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSG------------------- 359 (394)
Q Consensus 300 g~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~------------------- 359 (394)
.+|++||+-.. .......+...+..+.|.|+|+.|++++.||.|.+||+..+.++..+.|
T Consensus 500 kTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~s 579 (893)
T KOG0291|consen 500 KTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENS 579 (893)
T ss_pred ceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhc
Confidence 99999998543 3344556777899999999999999999999999999987776644433
Q ss_pred -ccCceeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 360 -HRDAIQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 360 -h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
.....+.+.+++||.++++||..+.|+||++.+
T Consensus 580 a~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~ 613 (893)
T KOG0291|consen 580 AKGKTFTTICYSADGKCILAGGESNSICIYDVPE 613 (893)
T ss_pred ccCCceEEEEEcCCCCEEEecCCcccEEEEECch
Confidence 235689999999999999999999999999864
No 16
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=8.2e-43 Score=305.83 Aligned_cols=339 Identities=20% Similarity=0.343 Sum_probs=270.6
Q ss_pred CCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCee--eEee----------------------------
Q 016187 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW--ASEI---------------------------- 103 (394)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~--~~~~---------------------------- 103 (394)
.....++..|.-+++...++|. +.++|||...|+||||+....+. ..++
T Consensus 49 ~~~~~iYtEH~~~vtVAkySPs-G~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrer 127 (603)
T KOG0318|consen 49 PASVDIYTEHAHQVTVAKYSPS-GFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRER 127 (603)
T ss_pred ccceeeeccccceeEEEEeCCC-ceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccc
Confidence 3447778999999999999997 67999999999999999654321 1223
Q ss_pred ----------------cCcccCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEE
Q 016187 104 ----------------QGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLA 166 (394)
Q Consensus 104 ----------------~~h~~~V~~v~~s~~g~-~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 166 (394)
.||...|.++.|-|... +++|||.|++|.+|+-...+...++..|..-|++++|+|+|..+++
T Consensus 128 fg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat 207 (603)
T KOG0318|consen 128 FGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFAT 207 (603)
T ss_pred eeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEE
Confidence 34555555555555443 3555555555555555445555566678889999999999999999
Q ss_pred ecCCCeEEEEeCCccceeeeec---ccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEc-------------
Q 016187 167 GSEDSTVWMWNADRAAYLNMFS---GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR------------- 230 (394)
Q Consensus 167 ~s~d~~i~iw~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~------------- 230 (394)
++.||.+.+||-.+++.+..+. +|.+.|.+++|+||++.+++++.|.++||||+.+++.+.++.
T Consensus 208 ~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~l 287 (603)
T KOG0318|consen 208 AGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCL 287 (603)
T ss_pred ecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEE
Confidence 9999999999999999888887 899999999999999999999999999999998765443321
Q ss_pred ---------------------------CCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE-----------EE
Q 016187 231 ---------------------------GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV-----------VS 272 (394)
Q Consensus 231 ---------------------------~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~-----------~~ 272 (394)
....|...|+++..+|+++++++|+.||.|.-|+..++.. +.
T Consensus 288 Wqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~ 367 (603)
T KOG0318|consen 288 WQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIK 367 (603)
T ss_pred EeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEE
Confidence 0123678899999999999999999999999999865421 11
Q ss_pred Eecc---------------------------C-------------------------------------------CCCEE
Q 016187 273 SLVS---------------------------H-------------------------------------------TDSIE 282 (394)
Q Consensus 273 ~~~~---------------------------h-------------------------------------------~~~i~ 282 (394)
.+.. + .-...
T Consensus 368 ~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s 447 (603)
T KOG0318|consen 368 GMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESS 447 (603)
T ss_pred EEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccc
Confidence 1100 0 00234
Q ss_pred EEEECCCCCeEEEEeCCCcEEEEeCCCCC---cceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEE-Eee
Q 016187 283 CIGFSRSSPWAATGSMDQKLIIWDLQHSL---PRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVR-TFS 358 (394)
Q Consensus 283 ~v~~~~~~~~l~s~s~dg~i~iwd~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~-~~~ 358 (394)
+++++|++..+|.|+.|+.|.||.+.... ......|..++++++|+|++.|||+|...+.|.+||+.+.+... .+.
T Consensus 448 ~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~ 527 (603)
T KOG0318|consen 448 AVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWA 527 (603)
T ss_pred eEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceee
Confidence 68899999999999999999999997643 22456799999999999999999999999999999998887633 455
Q ss_pred cccCceeEEEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 359 GHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 359 ~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
-|...|++|+|+|+..++||||.|-.|.||+++.+
T Consensus 528 FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP 562 (603)
T KOG0318|consen 528 FHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKP 562 (603)
T ss_pred eeeeeEEEEEeCCCceEEEeccccceEEEEEccCh
Confidence 69999999999999999999999999999998754
No 17
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.9e-44 Score=302.98 Aligned_cols=291 Identities=29% Similarity=0.475 Sum_probs=265.4
Q ss_pred CCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 016187 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI 133 (394)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~v 133 (394)
+...+.+.||..+|+.+-|+|. ..++++++.|.++++||..++++...|+||++.|..++|+..|++|++++.|-.+++
T Consensus 98 p~l~~~l~g~r~~vt~v~~hp~-~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~L 176 (406)
T KOG0295|consen 98 PNLVQKLAGHRSSVTRVIFHPS-EALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKL 176 (406)
T ss_pred CCchhhhhccccceeeeeeccC-ceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhh
Confidence 3556778899999999999995 568899999999999999999999999999999999999999999999999999999
Q ss_pred EeCCC-CceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCC
Q 016187 134 WDPSS-GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD 212 (394)
Q Consensus 134 wd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 212 (394)
||..+ .+....+.+|...|.+++|-|.|.++++++.|.+|++|+..++-+++.+.+|...|..++.+.||..+|+++.|
T Consensus 177 Wd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~d 256 (406)
T KOG0295|consen 177 WDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSND 256 (406)
T ss_pred eeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCC
Confidence 99876 45566778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCC---------------CCEEEEEeCCCcEEEEECCCCcEEEEeccC
Q 016187 213 ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD---------------STLALSGSKDGSVHMVNITTGKVVSSLVSH 277 (394)
Q Consensus 213 g~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------------~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h 277 (394)
.+|++|-+.++++...++.| .-++.|++|.|. +.++.+++.|++|++||+.++.++.++.+|
T Consensus 257 qtl~vW~~~t~~~k~~lR~h---Eh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~gh 333 (406)
T KOG0295|consen 257 QTLRVWVVATKQCKAELREH---EHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGH 333 (406)
T ss_pred ceEEEEEeccchhhhhhhcc---ccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecc
Confidence 99999999998777666654 446778877653 258999999999999999999999999999
Q ss_pred CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCccee-ccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 016187 278 TDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRST-CDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDS 348 (394)
Q Consensus 278 ~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~ 348 (394)
..+|..++|+|.|+||+|+..|+++++||++...+... ..|+.-|++++|..+..|+++|+-|.++++|..
T Consensus 334 dnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 334 DNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 99999999999999999999999999999988765443 367888999999999999999999999999964
No 18
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.6e-44 Score=325.12 Aligned_cols=330 Identities=27% Similarity=0.470 Sum_probs=283.0
Q ss_pred cCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecC-cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 016187 63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG-HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNL 141 (394)
Q Consensus 63 h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~-h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~ 141 (394)
..+.+++++..|+ ..+|.+++....+++|.+.++++++.+++ |+.||..++|+|.|..|++|+.|+.++|||...+..
T Consensus 61 d~d~ita~~l~~d-~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~ 139 (775)
T KOG0319|consen 61 DEDEITALALTPD-EEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYC 139 (775)
T ss_pred chhhhheeeecCC-ccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEE
Confidence 3567899999996 56788899999999999999999999998 999999999999999999999999999999999999
Q ss_pred EEEEecCCCCEEEEEEcCCCC--EEEEecCCCeEEEEeCCcc-ceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEE
Q 016187 142 KCTLEGPGGGVEWVSWHPRGH--IVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVW 218 (394)
Q Consensus 142 ~~~~~~~~~~v~~~~~~~~~~--~l~~~s~d~~i~iw~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vw 218 (394)
.+.+++|.+.|..+.|+|+-+ +|++|..|+++++||+++. .++..+..|.+.|++++|++|+..+++++.|..+.+|
T Consensus 140 th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vw 219 (775)
T KOG0319|consen 140 THSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVW 219 (775)
T ss_pred EEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEe
Confidence 999999999999999999865 6899999999999999854 4578889999999999999999999999999999999
Q ss_pred cCCCCceEEEEc--------------------------------------------------------------------
Q 016187 219 NPKSGENIHVIR-------------------------------------------------------------------- 230 (394)
Q Consensus 219 d~~~~~~~~~~~-------------------------------------------------------------------- 230 (394)
|+.+.+....+.
T Consensus 220 d~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~v 299 (775)
T KOG0319|consen 220 DLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLV 299 (775)
T ss_pred ehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEE
Confidence 974321100000
Q ss_pred ---------------------C---------------------------------------CCCcccCeEEEEEcCCCCE
Q 016187 231 ---------------------G---------------------------------------HPYHTEGLTCLTISADSTL 250 (394)
Q Consensus 231 ---------------------~---------------------------------------~~~~~~~i~~~~~~~~~~~ 250 (394)
+ .+.|.+.|.++....+|-+
T Consensus 300 taeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~l 379 (775)
T KOG0319|consen 300 TAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDL 379 (775)
T ss_pred EccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcE
Confidence 0 0113444556665566779
Q ss_pred EEEEeCCCcEEEEECCCCc----EEEEeccCCCCEEEEEECCCC-CeEEEEeCCCcEEEEeCCCCCc----c------ee
Q 016187 251 ALSGSKDGSVHMVNITTGK----VVSSLVSHTDSIECIGFSRSS-PWAATGSMDQKLIIWDLQHSLP----R------ST 315 (394)
Q Consensus 251 l~~g~~dg~i~i~d~~~~~----~~~~~~~h~~~i~~v~~~~~~-~~l~s~s~dg~i~iwd~~~~~~----~------~~ 315 (394)
+++|+.|.++++|.+..+. ++....+|+..|.+++++..+ ++|+++|.|.++++|++..... . ..
T Consensus 380 lat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~ 459 (775)
T KOG0319|consen 380 LATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTE 459 (775)
T ss_pred EEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHH
Confidence 9999999999999884432 445567899999999998765 5899999999999999876211 1 12
Q ss_pred ccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 316 CDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 316 ~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
..|...|+|++.+|+...++|||.|.+.+||++...+.+..|.||+..|++|.|+|..+.+||+|.|++|+||.+.+|
T Consensus 460 ~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f 537 (775)
T KOG0319|consen 460 RAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF 537 (775)
T ss_pred HhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc
Confidence 358899999999999999999999999999999999999999999999999999999999999999999999999987
No 19
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.1e-44 Score=301.69 Aligned_cols=290 Identities=24% Similarity=0.455 Sum_probs=271.5
Q ss_pred eeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEe
Q 016187 98 DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177 (394)
Q Consensus 98 ~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~ 177 (394)
.....+.+|..+|+.+-|+|+-..+++++.|++|++||..+|++...+++|...+..++|+..|+++++++.|-.+++||
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWD 178 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhee
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCc-cceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeC
Q 016187 178 ADR-AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK 256 (394)
Q Consensus 178 ~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~ 256 (394)
..+ .++++.+.+|...|.++.|-|.|.+++|++.|.+|+.|++.++-+++.+.+| .+-+..+....||.++++++.
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h---~ewvr~v~v~~DGti~As~s~ 255 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGH---SEWVRMVRVNQDGTIIASCSN 255 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCc---hHhEEEEEecCCeeEEEecCC
Confidence 987 5677888899999999999999999999999999999999999999998764 567999999999999999999
Q ss_pred CCcEEEEECCCCcEEEEeccCCCCEEEEEECCC---------------CCeEEEEeCCCcEEEEeCCCCCcce-eccCCC
Q 016187 257 DGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS---------------SPWAATGSMDQKLIIWDLQHSLPRS-TCDHED 320 (394)
Q Consensus 257 dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~---------------~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~ 320 (394)
|.+|++|-+.++++...+..|+.+|.|++|.|. ++++++++.|++|++||+.+..+.. ..+|..
T Consensus 256 dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdn 335 (406)
T KOG0295|consen 256 DQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDN 335 (406)
T ss_pred CceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccc
Confidence 999999999999888889999999999999763 3589999999999999999886654 458999
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEec
Q 016187 321 GVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEI 390 (394)
Q Consensus 321 ~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~ 390 (394)
.|..++|+|.|+||+++..|+++++||+.+++|.+.+..|...|+++.|+.+.+|++||+.|.++++|..
T Consensus 336 wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 336 WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 9999999999999999999999999999999999999999999999999999999999999999999974
No 20
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.1e-43 Score=291.31 Aligned_cols=288 Identities=26% Similarity=0.438 Sum_probs=254.8
Q ss_pred eeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEe
Q 016187 99 WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS-GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177 (394)
Q Consensus 99 ~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~ 177 (394)
++..+.+|++.|+.+.|+|+|.+||||+.|..|.+|++.. -+-...+++|.+.|..+.|.++++.+++++.|.+++.||
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 4456789999999999999999999999999999999542 344567789999999999999999999999999999999
Q ss_pred CCccceeeeecccCcCeEEEEECCCC-CeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeC
Q 016187 178 ADRAAYLNMFSGHGSSVTCGDFTPDG-KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK 256 (394)
Q Consensus 178 ~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~ 256 (394)
.++++.++.+++|..-|+.+.-..-| .++.|++.||++++||+++...++++. ....++++.|..++..+.+|+-
T Consensus 119 ~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~----~kyqltAv~f~d~s~qv~sggI 194 (338)
T KOG0265|consen 119 AETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE----NKYQLTAVGFKDTSDQVISGGI 194 (338)
T ss_pred cccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc----cceeEEEEEecccccceeeccc
Confidence 99999999999999999988744444 467799999999999999887776654 2346899999999999999999
Q ss_pred CCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCccee-----cc--CC--CCEEEEEE
Q 016187 257 DGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRST-----CD--HE--DGVTCLMW 327 (394)
Q Consensus 257 dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-----~~--~~--~~v~~~~~ 327 (394)
|+.|++||++.+..+..+.+|.++|+.+..+|++.++.+-+.|.++++||++...+... .+ |. .....++|
T Consensus 195 dn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~csw 274 (338)
T KOG0265|consen 195 DNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSW 274 (338)
T ss_pred cCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeec
Confidence 99999999999999999999999999999999999999999999999999976533222 12 22 23556789
Q ss_pred eCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEec
Q 016187 328 LGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEI 390 (394)
Q Consensus 328 ~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~ 390 (394)
+|++.++.+|+.|..+++||..+..++..+.||.+.|+++.|+|..+.|.+++.|.+|.+=++
T Consensus 275 sp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 275 SPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred cCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence 999999999999999999999999999999999999999999999999999999999987543
No 21
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.5e-42 Score=274.94 Aligned_cols=269 Identities=21% Similarity=0.377 Sum_probs=238.1
Q ss_pred CEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccc--eeeeecccCcCeEEE
Q 016187 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA--YLNMFSGHGSSVTCG 197 (394)
Q Consensus 120 ~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~--~~~~~~~h~~~v~~~ 197 (394)
-+|+|+|.|.+||+|...+|.+..+++.+.+.|+.+...|+++.|++++. ..|++||+++.. ++..+.+|...|+.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 47999999999999999999999999999999999999999998887654 689999998754 578899999999999
Q ss_pred EECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEec-c
Q 016187 198 DFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV-S 276 (394)
Q Consensus 198 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-~ 276 (394)
.|..+|+++++|+.||++||||++...+.+.++ +..+|+++..+|+...|++|..+|.|++||+....+...+. .
T Consensus 90 gF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~----~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe 165 (311)
T KOG0315|consen 90 GFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ----HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPE 165 (311)
T ss_pred EEeecCeEEEecCCCceEEEEeccCcccchhcc----CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCC
Confidence 999999999999999999999999866554444 45789999999999999999999999999999886665553 3
Q ss_pred CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc-------ceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 016187 277 HTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLP-------RSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSL 349 (394)
Q Consensus 277 h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~-------~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~ 349 (394)
...+|.++...|+|.+|+.+..-|+..+|++..... .+...|+.-+..+.++|+++|||++|.|.+++||++.
T Consensus 166 ~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~ 245 (311)
T KOG0315|consen 166 DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTD 245 (311)
T ss_pred CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecC
Confidence 456899999999999999999999999999854321 1234577788999999999999999999999999998
Q ss_pred CC-eEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 350 SG-DCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 350 ~~-~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
+. +....+++|...++..+||.|++||++|+.|+.+|+|++..-
T Consensus 246 ~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~ 290 (311)
T KOG0315|consen 246 DFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG 290 (311)
T ss_pred CceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccC
Confidence 87 666789999999999999999999999999999999998754
No 22
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.9e-43 Score=299.42 Aligned_cols=299 Identities=26% Similarity=0.483 Sum_probs=254.4
Q ss_pred CCCCCCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCC---eeeEeecCcccCEEEEEEcCCCCEEEEEe
Q 016187 50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG---DWASEIQGHKDSVSSLAFSMDGQLLASGG 126 (394)
Q Consensus 50 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~---~~~~~~~~h~~~V~~v~~s~~g~~l~t~s 126 (394)
...|.+..+++..|+++|+-+.|+|+ +.+|||++.|.++-+|.+... ++..++.||..+|..+.||||.++|++|+
T Consensus 210 ~qip~qt~qil~~htdEVWfl~FS~n-GkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg 288 (519)
T KOG0293|consen 210 LQIPSQTWQILQDHTDEVWFLQFSHN-GKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACG 288 (519)
T ss_pred ccCCchhhhhHhhCCCcEEEEEEcCC-CeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecC
Confidence 45678888999999999999999995 679999999999999997533 45778999999999999999999999999
Q ss_pred CCCcEEEEeCCCCceEEEEecC-CCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccC-cCeEEEEECCCCC
Q 016187 127 LDGLVQIWDPSSGNLKCTLEGP-GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHG-SSVTCGDFTPDGK 204 (394)
Q Consensus 127 ~d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~-~~v~~~~~~~~~~ 204 (394)
.|..+++||+.+|+....+... .-.+.+++|.|++..+++|+.|+++.+|+++... +..+.+-. ..|.+++.++||+
T Consensus 289 ~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk 367 (519)
T KOG0293|consen 289 FDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGK 367 (519)
T ss_pred chHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCc
Confidence 9999999999999988776543 5688999999999999999999999999997554 34455443 5688999999999
Q ss_pred eEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEE
Q 016187 205 TICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECI 284 (394)
Q Consensus 205 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v 284 (394)
++++.+.|..|++++..+......+. ...+++++++|.+++++++.=.+..+++||+...+.+..+.+|..
T Consensus 368 ~vl~v~~d~~i~l~~~e~~~dr~lis----e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq----- 438 (519)
T KOG0293|consen 368 YVLLVTVDKKIRLYNREARVDRGLIS----EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQ----- 438 (519)
T ss_pred EEEEEecccceeeechhhhhhhcccc----ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccc-----
Confidence 99999999999999987665543333 245799999999999999999999999999998888888877753
Q ss_pred EECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEe-CCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCc
Q 016187 285 GFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWL-GTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDA 363 (394)
Q Consensus 285 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~ 363 (394)
+.+++- + +|. .+..++++||.|+.|+||+..+|+++..+.||...
T Consensus 439 -----~~fiIr----------------------------S-CFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~ 484 (519)
T KOG0293|consen 439 -----GHFIIR----------------------------S-CFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKT 484 (519)
T ss_pred -----cceEEE----------------------------e-ccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcce
Confidence 222211 1 122 34579999999999999999999999999999999
Q ss_pred eeEEEEccC-CCEEEEEeCCCcEEEEeccCC
Q 016187 364 IQAISVSAH-QDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 364 v~~l~~~~~-~~~l~s~s~dg~i~iw~~~~~ 393 (394)
|++|+|+|. ..++||+|+||+||||....+
T Consensus 485 vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 485 VNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred eeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 999999995 568999999999999998754
No 23
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.5e-41 Score=273.82 Aligned_cols=285 Identities=27% Similarity=0.474 Sum_probs=240.9
Q ss_pred ceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCC---eeeEee-cCcccCEEEEEEcCCCCEEEEEeCCCcE
Q 016187 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG---DWASEI-QGHKDSVSSLAFSMDGQLLASGGLDGLV 131 (394)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~---~~~~~~-~~h~~~V~~v~~s~~g~~l~t~s~d~~i 131 (394)
..+.+.||++.|+.++|||.-+.+|||+|.|+.|++|+...+ .++..+ .+|+..|++++|+|.|++||+||.|.++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence 467788999999999999954679999999999999998743 344444 5799999999999999999999999999
Q ss_pred EEEeCCCC--ceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcc---ceeeeecccCcCeEEEEECCCCCeE
Q 016187 132 QIWDPSSG--NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA---AYLNMFSGHGSSVTCGDFTPDGKTI 206 (394)
Q Consensus 132 ~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l 206 (394)
.||.-..+ +.+.++++|...|.+++|+++|.+||+++.|..+++|..... .+...++.|...|..+.|+|...+|
T Consensus 86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL 165 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLL 165 (312)
T ss_pred EEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCccee
Confidence 99987655 456789999999999999999999999999999999998743 4667889999999999999999999
Q ss_pred EEEeCCCcEEEEcCCCC---ceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEE
Q 016187 207 CTGSDDATLRVWNPKSG---ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIEC 283 (394)
Q Consensus 207 ~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~ 283 (394)
++++.|.+|++|+-..+ .+...+.+ |...+.+++|++.|..+++++.|++++||-+.+.-. ..|..+++.
T Consensus 166 ~S~SYDnTIk~~~~~~dddW~c~~tl~g---~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~----~~~sr~~Y~ 238 (312)
T KOG0645|consen 166 FSCSYDNTIKVYRDEDDDDWECVQTLDG---HENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS----GMHSRALYD 238 (312)
T ss_pred EEeccCCeEEEEeecCCCCeeEEEEecC---ccceEEEEEecCCCceEEEecCCcceEeeeeccCcc----hhcccceEe
Confidence 99999999999986633 34566665 455799999999999999999999999998653211 237788999
Q ss_pred EEECCCCCeEEEEeCCCcEEEEeCCCCC--c------ceeccCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECC
Q 016187 284 IGFSRSSPWAATGSMDQKLIIWDLQHSL--P------RSTCDHEDGVTCLMWLGT-SKYVVTGCVDGKVRVWDSL 349 (394)
Q Consensus 284 v~~~~~~~~l~s~s~dg~i~iwd~~~~~--~------~~~~~~~~~v~~~~~~~~-~~~l~sg~~dg~i~iwd~~ 349 (394)
++|. ...+++++.|+.|++|...... + .....|+..|+++.|.|. .++|++|+.||.|++|.+.
T Consensus 239 v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 239 VPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred eeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 9998 5579999999999999765321 1 122358889999999995 7899999999999999753
No 24
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=6.9e-42 Score=296.31 Aligned_cols=279 Identities=25% Similarity=0.453 Sum_probs=254.1
Q ss_pred CcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEE
Q 016187 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT 144 (394)
Q Consensus 65 ~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~ 144 (394)
..|++|+|+. ++.+||+|+.||.+++|+. .+.++.+|..|+++|.++.|+..|.||++++.|+++.+||..+|.....
T Consensus 236 kdVT~L~Wn~-~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~ 313 (524)
T KOG0273|consen 236 KDVTSLDWNN-DGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQ 313 (524)
T ss_pred CCcceEEecC-CCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEe
Confidence 5899999997 5789999999999999996 5777889999999999999999999999999999999999999999988
Q ss_pred EecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCc
Q 016187 145 LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE 224 (394)
Q Consensus 145 ~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 224 (394)
+..|..+-..|.|-.+ ..+++++.|+.|+++.+....++.++.+|.++|.++.|.|.|.+|++++.|++++||......
T Consensus 314 f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~ 392 (524)
T KOG0273|consen 314 FEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN 392 (524)
T ss_pred eeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCc
Confidence 8888777455666543 468999999999999999999999999999999999999999999999999999999988777
Q ss_pred eEEEEcCCCCcccCeEEEEEcCCC---------CEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEE
Q 016187 225 NIHVIRGHPYHTEGLTCLTISADS---------TLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAAT 295 (394)
Q Consensus 225 ~~~~~~~~~~~~~~i~~~~~~~~~---------~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s 295 (394)
..+.+.. |...|..+.|+|++ ..+++++.|+++++||+..+.++.++..|..+|++++|+|++.++|+
T Consensus 393 ~~~~l~~---Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAs 469 (524)
T KOG0273|consen 393 SVHDLQA---HSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLAS 469 (524)
T ss_pred chhhhhh---hccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEe
Confidence 7666654 56779999999875 47899999999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 016187 296 GSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSL 349 (394)
Q Consensus 296 ~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~ 349 (394)
|+.||.|.||+++.........-...|..++|+.+|.+|.++-.||.+++.|++
T Consensus 470 Gs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 470 GSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred cCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 999999999999988777777777889999999999999999999999999875
No 25
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=8.6e-44 Score=303.03 Aligned_cols=281 Identities=22% Similarity=0.408 Sum_probs=249.9
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceee
Q 016187 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN 185 (394)
Q Consensus 106 h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~ 185 (394)
-+-+|..|.|.|+|+.|++|+..|.+.+|+..+......++.|..+|+++.|++++.++++|+.+|.|++|+..-.. ++
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk 173 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-VK 173 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-hH
Confidence 35579999999999999999999999999986665555678899999999999999999999999999999987544 34
Q ss_pred eeccc-CcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 016187 186 MFSGH-GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN 264 (394)
Q Consensus 186 ~~~~h-~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d 264 (394)
.+++| ...|++++|+|+...|++++.||+|+|||....+.-..+++ |.-.+.++.|+|...++++|+.|..|++||
T Consensus 174 ~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~G---HgwdVksvdWHP~kgLiasgskDnlVKlWD 250 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRG---HGWDVKSVDWHPTKGLIASGSKDNLVKLWD 250 (464)
T ss_pred HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheecc---CCCCcceeccCCccceeEEccCCceeEeec
Confidence 44444 58999999999999999999999999999988776666666 456799999999999999999999999999
Q ss_pred CCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC-CcceeccCCCCEEEEEEeCC-CCEEEEEeCCCe
Q 016187 265 ITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHS-LPRSTCDHEDGVTCLMWLGT-SKYVVTGCVDGK 342 (394)
Q Consensus 265 ~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~-~~~l~sg~~dg~ 342 (394)
.+++.++.++..|...|..+.|+|+++||+++|.|..+++||++.. ......+|...|+++.|+|- ..++++|+.||.
T Consensus 251 prSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs 330 (464)
T KOG0284|consen 251 PRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS 330 (464)
T ss_pred CCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCc
Confidence 9999999999999999999999999999999999999999999843 33445679999999999995 468889999999
Q ss_pred EEEEECCCCeEEEEe-ecccCceeEEEEccCCCEEEEEeCCCcEEEEec
Q 016187 343 VRVWDSLSGDCVRTF-SGHRDAIQAISVSAHQDFLVSVSLDGTARVFEI 390 (394)
Q Consensus 343 i~iwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~ 390 (394)
|..|.+...+.+..+ .+|.+.|++|+|+|=|.+|++|+.|.++|+|.-
T Consensus 331 vvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 331 VVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred eEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 999998866666665 489999999999999999999999999999963
No 26
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.9e-42 Score=289.17 Aligned_cols=290 Identities=24% Similarity=0.435 Sum_probs=264.6
Q ss_pred CCCCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcE
Q 016187 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLV 131 (394)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i 131 (394)
.|.+...++.||.+.|.||++.| +...||||+.|++++|||+.++++..++.||...|+.+++|+-..||++++.|+.|
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP-~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~V 217 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDP-GNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQV 217 (460)
T ss_pred CcceehhhhhhccceEEEEeeCC-CceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCee
Confidence 45677788999999999999999 46799999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeC
Q 016187 132 QIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD 211 (394)
Q Consensus 132 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 211 (394)
+.||+...+.+..+.+|-..|.+++.+|.-..|++|+.|.++++||+++...+..+.||..+|..+.+.|....+++|+.
T Consensus 218 KCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~ 297 (460)
T KOG0285|consen 218 KCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH 297 (460)
T ss_pred EEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred CCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCC
Q 016187 212 DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSP 291 (394)
Q Consensus 212 dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~ 291 (394)
|++||+||++.|+....+.. |...+++++.+|....+++++.| .|+-|++..|..+..+.+|...|++++...++
T Consensus 298 D~tvrlWDl~agkt~~tlt~---hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~- 372 (460)
T KOG0285|consen 298 DSTVRLWDLRAGKTMITLTH---HKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG- 372 (460)
T ss_pred CceEEEeeeccCceeEeeec---ccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-
Confidence 99999999999998877764 56789999999999999988876 48999999999999999999999999998776
Q ss_pred eEEEEeCCCcEEEEeCCCCCcce---------eccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 016187 292 WAATGSMDQKLIIWDLQHSLPRS---------TCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWD 347 (394)
Q Consensus 292 ~l~s~s~dg~i~iwd~~~~~~~~---------~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd 347 (394)
++++|+..|.+.+||.+...... ....+.+|.+.+|...+..|++|..|.+|++|.
T Consensus 373 v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 373 VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence 67889999999999987642111 123456789999999999999999999999995
No 27
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.5e-42 Score=314.54 Aligned_cols=306 Identities=25% Similarity=0.408 Sum_probs=256.6
Q ss_pred CCCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCe-------------------------------eeE
Q 016187 53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD-------------------------------WAS 101 (394)
Q Consensus 53 ~~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~-------------------------------~~~ 101 (394)
|.-...++..-...++|..|+++ ..+||-|-.|..|++|.+...+ ...
T Consensus 367 pSic~YT~~nt~~~v~ca~fSdd-ssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~ 445 (707)
T KOG0263|consen 367 PSICMYTFHNTYQGVTCAEFSDD-SSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSR 445 (707)
T ss_pred CcEEEEEEEEcCCcceeEeecCC-cchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeE
Confidence 33444445444568899999984 5689999999999999986311 224
Q ss_pred eecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcc
Q 016187 102 EIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA 181 (394)
Q Consensus 102 ~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~ 181 (394)
++-||.++|+.+.|+|+.++|+++|.|+++|+|.+.+...+..+++|..+|..+.|+|.|.++|++|.|++.++|.....
T Consensus 446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~ 525 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN 525 (707)
T ss_pred EeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC
Confidence 57899999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred ceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEE
Q 016187 182 AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVH 261 (394)
Q Consensus 182 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~ 261 (394)
..++.+.+|-+.|.|++|+|+..++++||.|.+||+||+.+|..+..+.+ |..+|++++++|+|++|++|+.||.|+
T Consensus 526 ~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G---H~~~V~al~~Sp~Gr~LaSg~ed~~I~ 602 (707)
T KOG0263|consen 526 KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG---HKGPVTALAFSPCGRYLASGDEDGLIK 602 (707)
T ss_pred CchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC---CCCceEEEEEcCCCceEeecccCCcEE
Confidence 99999999999999999999999999999999999999999999999887 678899999999999999999999999
Q ss_pred EEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCC
Q 016187 262 MVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDG 341 (394)
Q Consensus 262 i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg 341 (394)
+||+.+++++..+.+|++.|.++.|+.++..||+|+.|.+|++||+..........|- + ...+
T Consensus 603 iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~--------~---------~~~~ 665 (707)
T KOG0263|consen 603 IWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHI--------S---------TSNS 665 (707)
T ss_pred EEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccccccccc--------c---------cccc
Confidence 9999999999999999999999999999999999999999999998754322111110 0 0000
Q ss_pred eEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEE
Q 016187 342 KVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSV 379 (394)
Q Consensus 342 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~ 379 (394)
.+.-=+-.+.-++..|..-..+|..|.|....-.|+.|
T Consensus 666 ~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 666 AITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred cccccCCCCcceeeeeeecCceEEEEEEeccceeEEec
Confidence 00000113455677777777789999998765444443
No 28
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=6.6e-42 Score=287.06 Aligned_cols=288 Identities=25% Similarity=0.417 Sum_probs=261.1
Q ss_pred eeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeC
Q 016187 99 WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178 (394)
Q Consensus 99 ~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~ 178 (394)
+-+.+.||.+.|+|+++.|..+.|+||+.|++++|||+.+|+++.++.+|-..|..+++++...|+++++.|+.|+.||+
T Consensus 143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCC
Q 016187 179 DRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG 258 (394)
Q Consensus 179 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg 258 (394)
+..+.++.+.||-+.|.|++.+|.-..|++|+.|.++||||+++...+..+.+ |...|..+.+.|....+++|+.|+
T Consensus 223 e~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~G---H~~~V~~V~~~~~dpqvit~S~D~ 299 (460)
T KOG0285|consen 223 EYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSG---HTNPVASVMCQPTDPQVITGSHDS 299 (460)
T ss_pred hhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecC---CCCcceeEEeecCCCceEEecCCc
Confidence 99999999999999999999999999999999999999999999999999987 467799999999888999999999
Q ss_pred cEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC-CcceeccCCCCEEEEEEeCCCCEEEEE
Q 016187 259 SVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHS-LPRSTCDHEDGVTCLMWLGTSKYVVTG 337 (394)
Q Consensus 259 ~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~sg 337 (394)
+|++||++.|+...++..|...+.+++.+|....+|+++.|. ++-|++... ......+|...++++....|+ ++++|
T Consensus 300 tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G 377 (460)
T KOG0285|consen 300 TVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSG 377 (460)
T ss_pred eEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCc-eEEEc
Confidence 999999999999999999999999999999999999998875 889998654 344466788889999877665 78899
Q ss_pred eCCCeEEEEECCCCeEEEEeec--------ccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 338 CVDGKVRVWDSLSGDCVRTFSG--------HRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 338 ~~dg~i~iwd~~~~~~~~~~~~--------h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
+.+|.+.+||.++|-..+.+.. -...|.+.+|...+..|+||..|.+|++|.-+
T Consensus 378 ~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 378 GDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred CCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 9999999999998866554421 24568899999999999999999999999743
No 29
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.7e-40 Score=294.29 Aligned_cols=286 Identities=34% Similarity=0.641 Sum_probs=262.2
Q ss_pred EeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCc
Q 016187 101 SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR 180 (394)
Q Consensus 101 ~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~ 180 (394)
.++.+|.++|++++|+|++++|++++.|+.|++|++.+++....+..+...+..+.|+|+++++++++.++.+++|++.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 46789999999999999999999999999999999998888888888889999999999999999999999999999998
Q ss_pred cceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcE
Q 016187 181 AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260 (394)
Q Consensus 181 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i 260 (394)
++.+..+..|...+.++.|+|+++++++++.++.|++||+.+++....+.. |...+.++.++|++.++++++.++.|
T Consensus 83 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~~~~i 159 (289)
T cd00200 83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG---HTDWVNSVAFSPDGTFVASSSQDGTI 159 (289)
T ss_pred ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEecc---CCCcEEEEEEcCcCCEEEEEcCCCcE
Confidence 877888889999999999999988999988899999999998877766653 55679999999999999988889999
Q ss_pred EEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceec-cCCCCEEEEEEeCCCCEEEEEeC
Q 016187 261 HMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTC-DHEDGVTCLMWLGTSKYVVTGCV 339 (394)
Q Consensus 261 ~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~ 339 (394)
++||+++++.+..+..|...+.++.|+|++..+++++.++.+++||++........ .|...+.++.|+|++.++++++.
T Consensus 160 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 239 (289)
T cd00200 160 KLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSE 239 (289)
T ss_pred EEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcC
Confidence 99999999888888889999999999999999999999999999999876555444 67789999999999888888888
Q ss_pred CCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 340 DGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 340 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
+|.|++|+..+++.+..+.+|...|.+++|++++++|++++.||.|++|+
T Consensus 240 ~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 240 DGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 99999999999999999999999999999999999999999999999996
No 30
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.3e-40 Score=269.62 Aligned_cols=288 Identities=24% Similarity=0.420 Sum_probs=243.5
Q ss_pred eeEeecCcccCEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCce---EEEE-ecCCCCEEEEEEcCCCCEEEEecCCCeE
Q 016187 99 WASEIQGHKDSVSSLAFSMD-GQLLASGGLDGLVQIWDPSSGNL---KCTL-EGPGGGVEWVSWHPRGHIVLAGSEDSTV 173 (394)
Q Consensus 99 ~~~~~~~h~~~V~~v~~s~~-g~~l~t~s~d~~i~vwd~~~~~~---~~~~-~~~~~~v~~~~~~~~~~~l~~~s~d~~i 173 (394)
.+..+++|++.|..++|+|- |..|||||.|..|++|+...+.. ...+ .+|+..|+.++|+|.|++|++||-|.++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence 35678999999999999998 88999999999999999885432 2222 3688999999999999999999999999
Q ss_pred EEEeCCcc--ceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEE
Q 016187 174 WMWNADRA--AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLA 251 (394)
Q Consensus 174 ~iw~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 251 (394)
.||.-..+ +++..+.||...|.|++|+++|++||+++.|++|-||.+..+.........+.|...|..+.|+|...+|
T Consensus 86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL 165 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLL 165 (312)
T ss_pred EEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCccee
Confidence 99987644 5678899999999999999999999999999999999988665544444334467789999999999999
Q ss_pred EEEeCCCcEEEEECC---CCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEe
Q 016187 252 LSGSKDGSVHMVNIT---TGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWL 328 (394)
Q Consensus 252 ~~g~~dg~i~i~d~~---~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~ 328 (394)
++++.|.+|++|.-. .-.+..++.+|+..|.+++|++.|..|++++.|++++||...... ...|...+..+.|.
T Consensus 166 ~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~---~~~~sr~~Y~v~W~ 242 (312)
T KOG0645|consen 166 FSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL---SGMHSRALYDVPWD 242 (312)
T ss_pred EEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc---chhcccceEeeeec
Confidence 999999999999865 336889999999999999999999999999999999999865322 23466778889998
Q ss_pred CCCCEEEEEeCCCeEEEEECCCC------eEEE-EeecccCceeEEEEccC-CCEEEEEeCCCcEEEEecc
Q 016187 329 GTSKYVVTGCVDGKVRVWDSLSG------DCVR-TFSGHRDAIQAISVSAH-QDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 329 ~~~~~l~sg~~dg~i~iwd~~~~------~~~~-~~~~h~~~v~~l~~~~~-~~~l~s~s~dg~i~iw~~~ 391 (394)
...|++|+.|+.|++|--... +++. .-..|...|++++|.|. .+.|+|||+||.|++|.+.
T Consensus 243 --~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 243 --NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred --ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 568999999999999964322 1121 23468999999999995 7899999999999999875
No 31
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4.4e-43 Score=304.81 Aligned_cols=296 Identities=20% Similarity=0.389 Sum_probs=255.5
Q ss_pred CCCCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCC-CeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCc
Q 016187 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-GDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGL 130 (394)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~-~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~ 130 (394)
.|-..++.+.||+..|.++.|.|...+||+++|.|+.|+||++-. +++++++.||..+|..++|+++|..++|+|.|+.
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRF 281 (503)
T ss_pred ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeeccee
Confidence 466678889999999999999997789999999999999999865 8899999999999999999999999999999999
Q ss_pred EEEEeCCCCceEEEEecCCCCEEEEEEcCCC-CEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEE
Q 016187 131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG 209 (394)
Q Consensus 131 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 209 (394)
|++||+++|+++..+.. ...++++.|+|++ +.+++|+.|+.|+.||+++++.++.+..|-+.|..+.|-++|+++++.
T Consensus 282 lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred eeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence 99999999999887763 4568899999998 799999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE---EEeccCCCCEEEEEE
Q 016187 210 SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVV---SSLVSHTDSIECIGF 286 (394)
Q Consensus 210 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~---~~~~~h~~~i~~v~~ 286 (394)
+.|++++||+.+.+-.++.+.....| .+.|+..+|+++++++-+.|..|.++.+...-.+ ..+.+|..
T Consensus 361 SDdks~riWe~~~~v~ik~i~~~~~h--smP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~v------- 431 (503)
T KOG0282|consen 361 SDDKSVRIWENRIPVPIKNIADPEMH--TMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSV------- 431 (503)
T ss_pred ccCccEEEEEcCCCccchhhcchhhc--cCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceec-------
Confidence 99999999999877655544333223 4678899999999999999988888875422111 11222210
Q ss_pred CCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeE
Q 016187 287 SRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQA 366 (394)
Q Consensus 287 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 366 (394)
.+.-..+.|+|||.+|++|..||.+.+||.++.+++..+++|.+++..
T Consensus 432 --------------------------------aGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~ 479 (503)
T KOG0282|consen 432 --------------------------------AGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIG 479 (503)
T ss_pred --------------------------------cCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEE
Confidence 112345789999999999999999999999999999999999999999
Q ss_pred EEEccCC-CEEEEEeCCCcEEEEe
Q 016187 367 ISVSAHQ-DFLVSVSLDGTARVFE 389 (394)
Q Consensus 367 l~~~~~~-~~l~s~s~dg~i~iw~ 389 (394)
+.|+|.. ..+||||.||.|++|+
T Consensus 480 v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 480 VDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEecCCCcceeEecccCceeEecC
Confidence 9999975 5799999999999996
No 32
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.5e-43 Score=299.32 Aligned_cols=279 Identities=22% Similarity=0.425 Sum_probs=251.7
Q ss_pred CcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEE
Q 016187 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT 144 (394)
Q Consensus 65 ~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~ 144 (394)
-+|+.|.|.|. ++.|.+|+..|.+.+|+..+-.+...+++|..+|+++.|+++|.++++|+.+|.||+|+.+-...+..
T Consensus 97 c~V~~v~WtPe-GRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~ 175 (464)
T KOG0284|consen 97 CPVNVVRWTPE-GRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKII 175 (464)
T ss_pred cceeeEEEcCC-CceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHh
Confidence 47999999995 56778999999999999877777778899999999999999999999999999999999875555444
Q ss_pred EecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCc
Q 016187 145 LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE 224 (394)
Q Consensus 145 ~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 224 (394)
...|...|++++|+|+...++++|.||+|+|||....+....+.||.-.|.+++|+|...+|++|+.|..|++||+++++
T Consensus 176 ~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~ 255 (464)
T KOG0284|consen 176 QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS 255 (464)
T ss_pred hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcc
Confidence 44455899999999999999999999999999998888888889999999999999999999999999999999999999
Q ss_pred eEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCC-CeEEEEeCCCcEE
Q 016187 225 NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSS-PWAATGSMDQKLI 303 (394)
Q Consensus 225 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~-~~l~s~s~dg~i~ 303 (394)
++.++.+ |...|..+.|+|++++|++++.|..++++|+++.+.+..+++|...+.++.|+|-. .+|.+|+.||.|.
T Consensus 256 cl~tlh~---HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvv 332 (464)
T KOG0284|consen 256 CLATLHG---HKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVV 332 (464)
T ss_pred hhhhhhh---ccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceE
Confidence 9888765 56679999999999999999999999999999999999999999999999999964 5889999999999
Q ss_pred EEeCCCCC--cceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 016187 304 IWDLQHSL--PRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWD 347 (394)
Q Consensus 304 iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd 347 (394)
.|.+.... ......|...|++++|+|=|-.|++|+.|.++++|.
T Consensus 333 h~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 333 HWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred EEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 99986433 333457889999999999999999999999999996
No 33
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.2e-40 Score=312.38 Aligned_cols=295 Identities=29% Similarity=0.539 Sum_probs=262.3
Q ss_pred eeeeecc-CCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCe--eeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 016187 57 THIFSGH-SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD--WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI 133 (394)
Q Consensus 57 ~~~~~~h-~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~--~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~v 133 (394)
...+.+| ...|.++.|+|+ +..+++++.|+.+++|+....+ ....+.+|...|+.++|+|+|+++++++.|++|+|
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~-g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiri 229 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPD-GRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRI 229 (456)
T ss_pred eeeecccccCceEEEEEcCC-CCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEE
Confidence 4445454 789999999996 4569999999999999997777 77788999999999999999999999999999999
Q ss_pred EeC-CCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCC
Q 016187 134 WDP-SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD 212 (394)
Q Consensus 134 wd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 212 (394)
||+ ..+..+.++.+|...|++++|+|+++++++|+.|++|++||+++++++..+.+|...|++++|++++++|++++.|
T Consensus 230 wd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 230 WDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred eeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence 999 5568889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEcCCCCc--eEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCC
Q 016187 213 ATLRVWNPKSGE--NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSS 290 (394)
Q Consensus 213 g~i~vwd~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~ 290 (394)
+.|++||+.++. +...+..+.... .++++.|+|++.++++++.|+.+++||+..++.+..+.+|...+.|+
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~------ 382 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCI------ 382 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeE------
Confidence 999999999998 456666654444 79999999999999999999999999999999888887775442111
Q ss_pred CeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecc-cCceeEEEE
Q 016187 291 PWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGH-RDAIQAISV 369 (394)
Q Consensus 291 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~ 369 (394)
.+...++.+.++++|+.|+.|++|+..++..+..+.+| ...|..+.+
T Consensus 383 --------------------------------~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~ 430 (456)
T KOG0266|consen 383 --------------------------------FSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSS 430 (456)
T ss_pred --------------------------------ecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceecccc
Confidence 11223678899999999999999999999999999999 889999999
Q ss_pred ccCCCEEEEEe--CCCcEEEEecc
Q 016187 370 SAHQDFLVSVS--LDGTARVFEIA 391 (394)
Q Consensus 370 ~~~~~~l~s~s--~dg~i~iw~~~ 391 (394)
++..+++++++ .|+.+++|..+
T Consensus 431 ~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 431 HPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCCcCeeeecCcCCCceEEEecCC
Confidence 99999999998 79999999754
No 34
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=4.8e-39 Score=285.04 Aligned_cols=286 Identities=32% Similarity=0.613 Sum_probs=258.3
Q ss_pred eeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 016187 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS 137 (394)
Q Consensus 58 ~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~ 137 (394)
..+.+|.++|++++|+|+ +.+|++++.|+.+++|++.+++....+.+|...+..+.|+|++++|++++.|+.|++|++.
T Consensus 3 ~~~~~h~~~i~~~~~~~~-~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPD-GKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred hHhcccCCCEEEEEEcCC-CCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 457799999999999995 5688899999999999999888888899999999999999999999999999999999999
Q ss_pred CCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEE
Q 016187 138 SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 217 (394)
Q Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~v 217 (394)
+++....+..+...+.++.|+|++.++++++.++.+++|++.+.+....+..|...+.+++|+|+++++++++.|+.|++
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 161 (289)
T cd00200 82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL 161 (289)
T ss_pred cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEE
Confidence 88888888888889999999999888998888999999999988888888889999999999999999999888999999
Q ss_pred EcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEe
Q 016187 218 WNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGS 297 (394)
Q Consensus 218 wd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s 297 (394)
||+++++.+..+.. +...+.++.++|++..+++++.++.|++||++.++.+..+..|...+.++.|+|++.++++++
T Consensus 162 ~d~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 238 (289)
T cd00200 162 WDLRTGKCVATLTG---HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGS 238 (289)
T ss_pred EEccccccceeEec---CccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEc
Confidence 99998877766653 455799999999999999999999999999999998888888999999999999988999988
Q ss_pred CCCcEEEEeCCCCCcce-eccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 016187 298 MDQKLIIWDLQHSLPRS-TCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWD 347 (394)
Q Consensus 298 ~dg~i~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd 347 (394)
.++.+++|++....... ...|...+.++.|++++++|++++.||.|++|+
T Consensus 239 ~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 239 EDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 89999999998644332 336778899999999999999999999999995
No 35
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.1e-41 Score=310.66 Aligned_cols=277 Identities=23% Similarity=0.425 Sum_probs=242.6
Q ss_pred eecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcc
Q 016187 102 EIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA 181 (394)
Q Consensus 102 ~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~ 181 (394)
++..-...++|..|++|+.+||.|-.|..|++|.+...++ ..+++.. + -..+=+.+.|-.+.+.|....
T Consensus 373 T~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl-~~lk~~~-------~---l~~~d~~sad~~~~~~D~~~~ 441 (707)
T KOG0263|consen 373 TFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKL-KKLKDAS-------D---LSNIDTESADVDVDMLDDDSS 441 (707)
T ss_pred EEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhh-ccccchh-------h---hccccccccchhhhhccccCC
Confidence 3444456799999999999999999999999999875532 2222211 1 111224455555777777777
Q ss_pred ceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEE
Q 016187 182 AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVH 261 (394)
Q Consensus 182 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~ 261 (394)
...+.+-||.++|..+.|+|+.++|++++.|+++|+|.+.+..++...++ |..+|..+.|+|-|.++++++.|++.+
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~G---H~~PVwdV~F~P~GyYFatas~D~tAr 518 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKG---HLAPVWDVQFAPRGYYFATASHDQTAR 518 (707)
T ss_pred ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecC---CCcceeeEEecCCceEEEecCCCceee
Confidence 66777889999999999999999999999999999999999998888776 567899999999999999999999999
Q ss_pred EEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC-cceeccCCCCEEEEEEeCCCCEEEEEeCC
Q 016187 262 MVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSL-PRSTCDHEDGVTCLMWLGTSKYVVTGCVD 340 (394)
Q Consensus 262 i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~sg~~d 340 (394)
+|.....++++.+.+|-..|.|+.|+|+..|+++||.|.++++||+.+.. .+.+.+|..+|++++|+|+|++|++|+.|
T Consensus 519 LWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed 598 (707)
T KOG0263|consen 519 LWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDED 598 (707)
T ss_pred eeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccC
Confidence 99999999999999999999999999999999999999999999998764 45667999999999999999999999999
Q ss_pred CeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 341 GKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 341 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
|.|++||+.+++++..+.+|.+.|.+|.|+.+|..||+||.|.+|++||+..
T Consensus 599 ~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 599 GLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred CcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 9999999999999999999999999999999999999999999999999753
No 36
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=8.7e-40 Score=268.52 Aligned_cols=287 Identities=22% Similarity=0.398 Sum_probs=250.7
Q ss_pred CCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcC-CCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEE
Q 016187 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRIN-QGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ 132 (394)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~-~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~ 132 (394)
..+...+.||+++|+.+.|+| ++..|||||.|..|.+|++. .-+-...+++|.++|..+.|.+|++.++++|.|.+|+
T Consensus 37 ~ap~m~l~gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 37 QAPIMLLPGHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVR 115 (338)
T ss_pred cchhhhcCCCcceEEEEEECC-CCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEE
Confidence 345666889999999999999 56789999999999999953 3455567889999999999999999999999999999
Q ss_pred EEeCCCCceEEEEecCCCCEEEEEEcCCCC-EEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeC
Q 016187 133 IWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD 211 (394)
Q Consensus 133 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 211 (394)
.||..+|+....+++|..-|+.+.-...|. ++.+++.|+++++||+++...++++. ...+++++.|...+..+.+|+-
T Consensus 116 ~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggI 194 (338)
T KOG0265|consen 116 GWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGI 194 (338)
T ss_pred EEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccc
Confidence 999999999999999999999888544454 66788999999999999888777653 4567899999999999999999
Q ss_pred CCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC----CcEEEEeccCCC----CEEE
Q 016187 212 DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT----GKVVSSLVSHTD----SIEC 283 (394)
Q Consensus 212 dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~----~~~~~~~~~h~~----~i~~ 283 (394)
|+.|++||++.+..++.+.+ |.+.|+.+..+|+|.++++-+-|.++++||++- .+++..+.+|.- ....
T Consensus 195 dn~ikvWd~r~~d~~~~lsG---h~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~ 271 (338)
T KOG0265|consen 195 DNDIKVWDLRKNDGLYTLSG---HADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLK 271 (338)
T ss_pred cCceeeeccccCcceEEeec---ccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcce
Confidence 99999999999999999887 578899999999999999999999999999874 345666766532 3456
Q ss_pred EEECCCCCeEEEEeCCCcEEEEeCCCC-CcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 016187 284 IGFSRSSPWAATGSMDQKLIIWDLQHS-LPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRV 345 (394)
Q Consensus 284 v~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~i 345 (394)
.+|+|++.++..|+.|..+.+||.... ......+|...|+++.|+|...+|.+++.|.+|++
T Consensus 272 cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 272 CSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred eeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 789999999999999999999998774 34455689999999999999999999999999986
No 37
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.4e-38 Score=319.63 Aligned_cols=299 Identities=18% Similarity=0.343 Sum_probs=250.8
Q ss_pred CCeEEEEEcCCCeeeEe-----ecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----c----eEEEEecCCCCE
Q 016187 86 DDKGFFWRINQGDWASE-----IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG----N----LKCTLEGPGGGV 152 (394)
Q Consensus 86 d~~v~~w~~~~~~~~~~-----~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~----~----~~~~~~~~~~~v 152 (394)
+|-+++|+....+.... +.+|...|.+++|+|+|++||+|+.|++|+||+.... . ....+. +...+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 56678888776554433 4458999999999999999999999999999997532 1 112223 34678
Q ss_pred EEEEEcCC-CCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECC-CCCeEEEEeCCCcEEEEcCCCCceEEEEc
Q 016187 153 EWVSWHPR-GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDATLRVWNPKSGENIHVIR 230 (394)
Q Consensus 153 ~~~~~~~~-~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 230 (394)
.+++|++. +.+|++++.|++|++||+.+++.+..+.+|...|++++|+| ++.+|++|+.||+|++||++++..+..+.
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~ 615 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK 615 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe
Confidence 99999875 67999999999999999999988889999999999999997 78999999999999999999988877765
Q ss_pred CCCCcccCeEEEEEc-CCCCEEEEEeCCCcEEEEECCCCc-EEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 016187 231 GHPYHTEGLTCLTIS-ADSTLALSGSKDGSVHMVNITTGK-VVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQ 308 (394)
Q Consensus 231 ~~~~~~~~i~~~~~~-~~~~~l~~g~~dg~i~i~d~~~~~-~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~ 308 (394)
. ...+.++.|+ +++.++++|+.||.|++||+++.+ .+..+.+|...|.++.|. ++.++++++.|++|++||+.
T Consensus 616 ~----~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~ 690 (793)
T PLN00181 616 T----KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLS 690 (793)
T ss_pred c----CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCC
Confidence 3 2468889884 579999999999999999998865 567788999999999997 67899999999999999986
Q ss_pred CC-------CcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEe-------------ecccCceeEEE
Q 016187 309 HS-------LPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTF-------------SGHRDAIQAIS 368 (394)
Q Consensus 309 ~~-------~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~-------------~~h~~~v~~l~ 368 (394)
.. ......+|...+.++.|++++++|++|+.||.|++|+......+..+ ..|...|.+++
T Consensus 691 ~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ 770 (793)
T PLN00181 691 MSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVC 770 (793)
T ss_pred CCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEE
Confidence 42 22334578888999999999999999999999999997665443222 23556799999
Q ss_pred EccCCCEEEEEeCCCcEEEEec
Q 016187 369 VSAHQDFLVSVSLDGTARVFEI 390 (394)
Q Consensus 369 ~~~~~~~l~s~s~dg~i~iw~~ 390 (394)
|++++.+|++|+.||.|+||++
T Consensus 771 ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 771 WRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EcCCCCeEEEecCCCcEEEEec
Confidence 9999999999999999999986
No 38
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-39 Score=290.00 Aligned_cols=285 Identities=23% Similarity=0.363 Sum_probs=257.4
Q ss_pred eeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 016187 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDP 136 (394)
Q Consensus 57 ~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~ 136 (394)
...+..|++.|.+|.+||+.+-+|+ +=..|.+.||+.++...+..+.-..-+|++..|-+-.+.+++|+.|..|+||+.
T Consensus 6 krk~~~rSdRVKsVd~HPtePw~la-~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfny 84 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHPTEPWILA-ALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY 84 (794)
T ss_pred hhHhhccCCceeeeecCCCCceEEE-eeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEec
Confidence 4456669999999999999876665 567899999999999999999988999999999999999999999999999999
Q ss_pred CCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcc-ceeeeecccCcCeEEEEECC-CCCeEEEEeCCCc
Q 016187 137 SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDAT 214 (394)
Q Consensus 137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~-~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~ 214 (394)
++++.+..+..|.+-|++++.||...+++++|.|-+|++|+.+.. .+.+.+.||...|.+++|.| |.+.+||++-|++
T Consensus 85 nt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrT 164 (794)
T KOG0276|consen 85 NTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRT 164 (794)
T ss_pred ccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecccc
Confidence 999999999999999999999999999999999999999999765 67788999999999999999 6789999999999
Q ss_pred EEEEcCCCCceEEEEcCCCCcccCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCe
Q 016187 215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD--STLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPW 292 (394)
Q Consensus 215 i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~ 292 (394)
|+||.+....+..++++ |..+|+|+.+-+- ..++++|+.|.+|++||.++..++.++.+|+..|+++.|+|.-++
T Consensus 165 VKVWslgs~~~nfTl~g---HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpi 241 (794)
T KOG0276|consen 165 VKVWSLGSPHPNFTLEG---HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPI 241 (794)
T ss_pred EEEEEcCCCCCceeeec---cccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcE
Confidence 99999988888888876 6789999999774 479999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCCcceecc-CCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 016187 293 AATGSMDQKLIIWDLQHSLPRSTCD-HEDGVTCLMWLGTSKYVVTGCVDGKVRV 345 (394)
Q Consensus 293 l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~sg~~dg~i~i 345 (394)
++|||.||+++||+..+........ .-.++.|++..+.++.++.|...|.|.+
T Consensus 242 iisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 242 IISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred EEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 9999999999999987765444332 3467999999998889999988887654
No 39
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-38 Score=290.38 Aligned_cols=321 Identities=21% Similarity=0.357 Sum_probs=271.0
Q ss_pred CCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEE
Q 016187 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC 143 (394)
Q Consensus 64 ~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~ 143 (394)
..+|+|+.-+| +..+||.|..||.|++|+..+++...++.||+..|+++.|+..|..|++||.|+.|.+||+-...-+.
T Consensus 65 k~evt~l~~~~-d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~ 143 (888)
T KOG0306|consen 65 KAEVTCLRSSD-DILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLF 143 (888)
T ss_pred cceEEEeeccC-CcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeE
Confidence 35899999888 56789999999999999999999899999999999999999999999999999999999997766677
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeee-------------------------------------
Q 016187 144 TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM------------------------------------- 186 (394)
Q Consensus 144 ~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~------------------------------------- 186 (394)
.+.+|.+.|+...|....+++++.+.|+.|++||+.+..+..+
T Consensus 144 rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D 223 (888)
T KOG0306|consen 144 RLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDD 223 (888)
T ss_pred EeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccc
Confidence 7788877777776666666777777777777776643221111
Q ss_pred --------------------------------------------------------------------------------
Q 016187 187 -------------------------------------------------------------------------------- 186 (394)
Q Consensus 187 -------------------------------------------------------------------------------- 186 (394)
T Consensus 224 ~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v 303 (888)
T KOG0306|consen 224 EKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDV 303 (888)
T ss_pred cccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccch
Confidence
Q ss_pred -----------------------------------------------------------------ecccCcCeEEEEECC
Q 016187 187 -----------------------------------------------------------------FSGHGSSVTCGDFTP 201 (394)
Q Consensus 187 -----------------------------------------------------------------~~~h~~~v~~~~~~~ 201 (394)
+.||...|.+++++.
T Consensus 304 ~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~ 383 (888)
T KOG0306|consen 304 EKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSS 383 (888)
T ss_pred hhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeec
Confidence 025666677777777
Q ss_pred CCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCE
Q 016187 202 DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSI 281 (394)
Q Consensus 202 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i 281 (394)
+...++||+ .+++++|+..+.+++.++.. ..+.+..|-|.++++++|...|.+.+||+.+...+.++.+|.+.|
T Consensus 384 d~~~~~Sga-~~SikiWn~~t~kciRTi~~-----~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaI 457 (888)
T KOG0306|consen 384 DSILLASGA-GESIKIWNRDTLKCIRTITC-----GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAI 457 (888)
T ss_pred CceeeeecC-CCcEEEEEccCcceeEEecc-----ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccce
Confidence 766666654 47788999888888887753 357788999999999999999999999999999999999999999
Q ss_pred EEEEECCCCCeEEEEeCCCcEEEEeCCCC------Ccc-------eeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 016187 282 ECIGFSRSSPWAATGSMDQKLIIWDLQHS------LPR-------STCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDS 348 (394)
Q Consensus 282 ~~v~~~~~~~~l~s~s~dg~i~iwd~~~~------~~~-------~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~ 348 (394)
..++.+|++..+++||.|.+|++||..-. +.+ .....++.|.|+.++||+++|+.+--|.+|+||-+
T Consensus 458 Wsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyfl 537 (888)
T KOG0306|consen 458 WSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFL 537 (888)
T ss_pred eeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEe
Confidence 99999999999999999999999996311 101 12334567999999999999999999999999999
Q ss_pred CCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 349 LSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 349 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
.+-+..-++-||.-||.+|.++||+++++|||.|++|+||-++
T Consensus 538 DtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLd 580 (888)
T KOG0306|consen 538 DTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLD 580 (888)
T ss_pred cceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccc
Confidence 9999988999999999999999999999999999999999875
No 40
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-38 Score=252.76 Aligned_cols=292 Identities=23% Similarity=0.342 Sum_probs=254.6
Q ss_pred CCCCCCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCC
Q 016187 50 TEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG 129 (394)
Q Consensus 50 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~ 129 (394)
.+.|.+...++..|.++|.++.|+- ++++..|+|.|+++++|+...+.++.++.||...|..++.+.|...|++|+.|.
T Consensus 3 ~e~ptkr~~~l~~~qgaV~avryN~-dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk 81 (307)
T KOG0316|consen 3 LELPTKRLSILDCAQGAVRAVRYNV-DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDK 81 (307)
T ss_pred ccCcchhceeecccccceEEEEEcc-CCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCc
Confidence 3466777888999999999999997 567888999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCc--cceeeeecccCcCeEEEEECCCCCeEE
Q 016187 130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR--AAYLNMFSGHGSSVTCGDFTPDGKTIC 207 (394)
Q Consensus 130 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~ 207 (394)
.+.+||+++|+....+.+|.+.|+.++|+.+...+++|+.|.++++||-++ .++++.+......|.++..+ +..++
T Consensus 82 ~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIv 159 (307)
T KOG0316|consen 82 AVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIV 159 (307)
T ss_pred eEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEE
Confidence 999999999999999999999999999999999999999999999999764 46778887778888888775 56899
Q ss_pred EEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEEC
Q 016187 208 TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS 287 (394)
Q Consensus 208 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~ 287 (394)
+|+.||++|.||++.|+...-. ...+|+|++++++++..++++.|++|++.|-.+|+++..+.+|...-..+
T Consensus 160 aGS~DGtvRtydiR~G~l~sDy-----~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykl--- 231 (307)
T KOG0316|consen 160 AGSVDGTVRTYDIRKGTLSSDY-----FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKL--- 231 (307)
T ss_pred eeccCCcEEEEEeecceeehhh-----cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeee---
Confidence 9999999999999998754332 34579999999999999999999999999999999999888885432211
Q ss_pred CCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCc-eeE
Q 016187 288 RSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDA-IQA 366 (394)
Q Consensus 288 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~-v~~ 366 (394)
.+++......+++|+.||.|++||+....++..+..|... |.+
T Consensus 232 ------------------------------------dc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~d 275 (307)
T KOG0316|consen 232 ------------------------------------DCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTD 275 (307)
T ss_pred ------------------------------------eeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEe
Confidence 1123445568899999999999999999999999988888 799
Q ss_pred EEEccCCCEEEEEeCCCcEEEEe
Q 016187 367 ISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 367 l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
+.++|....|+++...+ +..|.
T Consensus 276 l~~hp~~~~f~~A~~~~-~~~~~ 297 (307)
T KOG0316|consen 276 LSCHPTMDDFITATGHG-DLFWY 297 (307)
T ss_pred eecccCccceeEecCCc-eecee
Confidence 99999988888877554 45554
No 41
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=3.3e-38 Score=265.61 Aligned_cols=288 Identities=19% Similarity=0.316 Sum_probs=247.6
Q ss_pred eEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCC
Q 016187 100 ASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179 (394)
Q Consensus 100 ~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~ 179 (394)
+.+|..|+++|.+++.+|+.++++||+.|..-.+|+..+|+....+.+|+..|+++.|+.++.+|++|..+|.+++|...
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s 136 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS 136 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCc
Q 016187 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGS 259 (394)
Q Consensus 180 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~ 259 (394)
++.....+......+..+.|+|.+..|+.|+.||.+-+|.+.++...+.+.+ |..++++-.|.|+|+.++++..||+
T Consensus 137 tg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~G---h~~~ct~G~f~pdGKr~~tgy~dgt 213 (399)
T KOG0296|consen 137 TGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSG---HNSPCTCGEFIPDGKRILTGYDDGT 213 (399)
T ss_pred cCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecC---CCCCcccccccCCCceEEEEecCce
Confidence 9888777766777888899999999999999999999999988766777766 5678999999999999999999999
Q ss_pred EEEEECCCCcEEEEeccC-CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcc---------eeccCCCCEEE---EE
Q 016187 260 VHMVNITTGKVVSSLVSH-TDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPR---------STCDHEDGVTC---LM 326 (394)
Q Consensus 260 i~i~d~~~~~~~~~~~~h-~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~---------~~~~~~~~v~~---~~ 326 (394)
|++||+.+++++..+..- .....++.++..+..+..|+.++.+++-+..+.+.. ....++..+.| +.
T Consensus 214 i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~ 293 (399)
T KOG0296|consen 214 IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIP 293 (399)
T ss_pred EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcc
Confidence 999999999999887632 345678888888888999999988888776543221 12233444444 45
Q ss_pred EeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 327 WLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 327 ~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
|+..-++.|+|+.||+|.|||+...++.+.+. |..+|..+.|-+ ..+|++++.||.||+||..+
T Consensus 294 ~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRt 357 (399)
T KOG0296|consen 294 SSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVRQWDART 357 (399)
T ss_pred cccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC-cchheeeccCceEEeeeccc
Confidence 55566789999999999999998777665544 888999999988 78999999999999999764
No 42
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.5e-39 Score=296.57 Aligned_cols=314 Identities=21% Similarity=0.365 Sum_probs=261.2
Q ss_pred eccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 016187 61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN 140 (394)
Q Consensus 61 ~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~ 140 (394)
..-+..|..++|||..+ .+.++=..|+|++||+.-+.++..+.+|.++|+.++|+|.+.++++|+.|.+|+||+..+.+
T Consensus 6 EskSsRvKglsFHP~rP-wILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr 84 (1202)
T KOG0292|consen 6 ESKSSRVKGLSFHPKRP-WILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR 84 (1202)
T ss_pred hcccccccceecCCCCC-EEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce
Confidence 33456789999999766 56677899999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcC
Q 016187 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP 220 (394)
Q Consensus 141 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 220 (394)
++.++.+|-+.|+.+.||+.-..++++|.|.+|+||+.++.+++..+.||...|.|.+|+|....++|+|-|.+|||||+
T Consensus 85 clftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDi 164 (1202)
T KOG0292|consen 85 CLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDI 164 (1202)
T ss_pred ehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCC
Q 016187 221 KSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQ 300 (394)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg 300 (394)
..-+.-. .... ...+.+.. .+ +.-=+-|+.|-. +...+.+|...|+-++|+|.-++++||+.|.
T Consensus 165 sGLRkk~-~~pg-~~e~~~~~---~~-~~~dLfg~~DaV----------VK~VLEGHDRGVNwaAfhpTlpliVSG~DDR 228 (1202)
T KOG0292|consen 165 SGLRKKN-KAPG-SLEDQMRG---QQ-GNSDLFGQTDAV----------VKHVLEGHDRGVNWAAFHPTLPLIVSGADDR 228 (1202)
T ss_pred cchhccC-CCCC-Cchhhhhc---cc-cchhhcCCcCee----------eeeeecccccccceEEecCCcceEEecCCcc
Confidence 6432211 1100 00000000 00 000011222222 2345678999999999999999999999999
Q ss_pred cEEEEeCCCCC---cceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEE
Q 016187 301 KLIIWDLQHSL---PRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLV 377 (394)
Q Consensus 301 ~i~iwd~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~ 377 (394)
.|++|.+.... .-...+|...|+|+.|+|....+++.|.|++|+|||+...+.++.|.-.++.-+.++.+|..+++|
T Consensus 229 qVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfA 308 (1202)
T KOG0292|consen 229 QVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFA 308 (1202)
T ss_pred eeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceee
Confidence 99999986542 223357999999999999999999999999999999999999999987788899999999999888
Q ss_pred EEeCCCcEEEEeccC
Q 016187 378 SVSLDGTARVFEIAD 392 (394)
Q Consensus 378 s~s~dg~i~iw~~~~ 392 (394)
.|- |+-+-+|.++.
T Consensus 309 AgH-DsGm~VFkleR 322 (1202)
T KOG0292|consen 309 AGH-DSGMIVFKLER 322 (1202)
T ss_pred eec-CCceEEEEEcc
Confidence 555 55567777763
No 43
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-37 Score=283.79 Aligned_cols=324 Identities=25% Similarity=0.397 Sum_probs=277.8
Q ss_pred CcEEEEEEcCCCCc--EEEEecCCCeEEEEEcCC-Cee--------eEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 016187 65 DEVYSVACSPTDAT--LVATGGGDDKGFFWRINQ-GDW--------ASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI 133 (394)
Q Consensus 65 ~~v~~~~~~p~~~~--~lasg~~d~~v~~w~~~~-~~~--------~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~v 133 (394)
..+.++.+-|..+. .|++ -.+.++.++.++. ++. ...+.||...|+++++|.+...+++|+ .+.+++
T Consensus 321 ~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~Siki 398 (888)
T KOG0306|consen 321 AKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKI 398 (888)
T ss_pred hheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEE
Confidence 45666777664332 3333 4567888887764 211 135689999999999999988888776 468999
Q ss_pred EeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCC
Q 016187 134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA 213 (394)
Q Consensus 134 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg 213 (394)
|+..+.+++.++... .+.+..|-|.++++++|...|.+.+||+.+...+...++|.+.+..++.+||++.+++|+.|.
T Consensus 399 Wn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDk 476 (888)
T KOG0306|consen 399 WNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADK 476 (888)
T ss_pred EEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCc
Confidence 999999999888653 788999999999999999999999999999988888999999999999999999999999999
Q ss_pred cEEEEcCCC-----CceEEEEcCCC----CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEE
Q 016187 214 TLRVWNPKS-----GENIHVIRGHP----YHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECI 284 (394)
Q Consensus 214 ~i~vwd~~~-----~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v 284 (394)
+|++||..- +.+.+.+..+. ...+.+.|+.+|||+++++++=.|.++++|-+.+.+..-++.+|.=||.|+
T Consensus 477 tVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~sm 556 (888)
T KOG0306|consen 477 TVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSM 556 (888)
T ss_pred EEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEE
Confidence 999999641 11111111110 124579999999999999999999999999999999999999999999999
Q ss_pred EECCCCCeEEEEeCCCcEEEEeCCCCCcce-eccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCc
Q 016187 285 GFSRSSPWAATGSMDQKLIIWDLQHSLPRS-TCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDA 363 (394)
Q Consensus 285 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~ 363 (394)
.++|++.+++|||.|..|++|-+..+.+.. ...|.+.|.++.|.|...++++++.|+.|+.||....++++.+.+|...
T Consensus 557 DIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~e 636 (888)
T KOG0306|consen 557 DISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSE 636 (888)
T ss_pred eccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchhe
Confidence 999999999999999999999998876654 5689999999999999999999999999999999999999999999999
Q ss_pred eeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 364 IQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 364 v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
|++++.+|+|.+++|+|.|.+||+|.-.+
T Consensus 637 v~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 637 VWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred eeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 99999999999999999999999998543
No 44
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=8.9e-39 Score=258.55 Aligned_cols=286 Identities=22% Similarity=0.306 Sum_probs=247.8
Q ss_pred eecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcc
Q 016187 102 EIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA 181 (394)
Q Consensus 102 ~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~ 181 (394)
.++||..+++.+.|+.+|.+|++++.|.+..||-..+|+.+.++.+|.+.|+++....+.+.+++|+.|.++++||++++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 47899999999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred ceeeeecccCcCeEEEEECCCCCeEEEEeC-----CCcEEEEcCCCC-------ceEEEEcCCCCcccCeEEEEEcCCCC
Q 016187 182 AYLNMFSGHGSSVTCGDFTPDGKTICTGSD-----DATLRVWNPKSG-------ENIHVIRGHPYHTEGLTCLTISADST 249 (394)
Q Consensus 182 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-----dg~i~vwd~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~ 249 (394)
+.+..++ -..+|..+.|+++|++++.+.. .+.|.++|++.. ++...+. .+...++.+.|+|-+.
T Consensus 85 k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~---t~~skit~a~Wg~l~~ 160 (327)
T KOG0643|consen 85 KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP---TPDSKITSALWGPLGE 160 (327)
T ss_pred cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec---CCccceeeeeecccCC
Confidence 9988875 4668999999999998877653 467999998843 3333433 3457899999999999
Q ss_pred EEEEEeCCCcEEEEECCCCc-EEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEe
Q 016187 250 LALSGSKDGSVHMVNITTGK-VVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWL 328 (394)
Q Consensus 250 ~l~~g~~dg~i~i~d~~~~~-~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~ 328 (394)
++++|..||.|.+||+++|+ .+.+...|...|+.++++|+..+++++|.|.+.++||+.+....+...-..+|++.+++
T Consensus 161 ~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aais 240 (327)
T KOG0643|consen 161 TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAIS 240 (327)
T ss_pred EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecc
Confidence 99999999999999999985 45666789999999999999999999999999999999988887777788899999999
Q ss_pred CCCCEEEEEeCCCe--------------EEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 329 GTSKYVVTGCVDGK--------------VRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 329 ~~~~~l~sg~~dg~--------------i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
|-...++.|+.... .++|++-..+.+.+++||-++|++|+|+|+|+..+||+.||.||+..++
T Consensus 241 P~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 241 PLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred cccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 98877776653211 2333333345567889999999999999999999999999999998654
No 45
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.3e-39 Score=272.41 Aligned_cols=273 Identities=26% Similarity=0.505 Sum_probs=237.6
Q ss_pred cCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceE
Q 016187 63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK 142 (394)
Q Consensus 63 h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~ 142 (394)
-.+.|||+.+.. ..++||..|.+|++||.++.++...+.||++.|.|+.|. .+.+++||.|.+|+|||+++|+.+
T Consensus 196 ~skgVYClQYDD---~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l 270 (499)
T KOG0281|consen 196 NSKGVYCLQYDD---EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPL 270 (499)
T ss_pred cCCceEEEEecc---hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchh
Confidence 357899999853 357899999999999999999999999999999999985 459999999999999999999999
Q ss_pred EEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccc---eeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEc
Q 016187 143 CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA---YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219 (394)
Q Consensus 143 ~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 219 (394)
.++-+|.+.|..+.|+ +.+++++|.|.++.+|++.... +.+.+.||...|..+.|+ .+++++++.|.+|++|+
T Consensus 271 ~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~ 346 (499)
T KOG0281|consen 271 NTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWS 346 (499)
T ss_pred hHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEe
Confidence 9999999999999997 4589999999999999987543 345678999999999885 56999999999999999
Q ss_pred CCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCC
Q 016187 220 PKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMD 299 (394)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~d 299 (394)
+.+++.+.++.+ |..+|.|+.+ .++++++|+.|.+|++||+..|.++..+++|++-|.|+.|. .+.+++|+.|
T Consensus 347 ~st~efvRtl~g---HkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYD 419 (499)
T KOG0281|consen 347 TSTCEFVRTLNG---HKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYD 419 (499)
T ss_pred ccceeeehhhhc---ccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeecccc
Confidence 999998888876 5677888775 48999999999999999999999999999999999999997 4579999999
Q ss_pred CcEEEEeCCCCCcc----------eeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeE
Q 016187 300 QKLIIWDLQHSLPR----------STCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDC 353 (394)
Q Consensus 300 g~i~iwd~~~~~~~----------~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~ 353 (394)
|+|++||+...... ....|.+.|..+.| |...+++.+.|.+|.|||...+-.
T Consensus 420 GkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 420 GKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred ceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCc
Confidence 99999998654221 22357778888877 556899999999999999876643
No 46
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.9e-38 Score=281.63 Aligned_cols=285 Identities=20% Similarity=0.338 Sum_probs=261.7
Q ss_pred eEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCC
Q 016187 100 ASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179 (394)
Q Consensus 100 ~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~ 179 (394)
.+.+..|.+.|.++.|+|....++++-.+|.|.||+..+...+..+.-..-+|+...|-+..+.+++|+.|..|++|+.+
T Consensus 6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn 85 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN 85 (794)
T ss_pred hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecc
Confidence 44567799999999999999999999999999999999999998888888899999999999999999999999999999
Q ss_pred ccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCC-ceEEEEcCCCCcccCeEEEEEcC-CCCEEEEEeCC
Q 016187 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG-ENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKD 257 (394)
Q Consensus 180 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~g~~d 257 (394)
+...++.|.+|.+.|.|++.+|...+++|+|.|-+|++||...+ .+.+++.+ |...|.+++|.| |.+.+++++.|
T Consensus 86 t~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeG---H~HyVMqv~fnPkD~ntFaS~sLD 162 (794)
T KOG0276|consen 86 TGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEG---HEHYVMQVAFNPKDPNTFASASLD 162 (794)
T ss_pred cceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcC---cceEEEEEEecCCCccceeeeecc
Confidence 99999999999999999999999999999999999999998765 34556666 456799999999 56789999999
Q ss_pred CcEEEEECCCCcEEEEeccCCCCEEEEEECCC--CCeEEEEeCCCcEEEEeCCCCCccee-ccCCCCEEEEEEeCCCCEE
Q 016187 258 GSVHMVNITTGKVVSSLVSHTDSIECIGFSRS--SPWAATGSMDQKLIIWDLQHSLPRST-CDHEDGVTCLMWLGTSKYV 334 (394)
Q Consensus 258 g~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l 334 (394)
++|++|.+.+..+..++.+|...|+|+.+-+. .++|+||+.|.++++||.++..+... -+|...|+++.|+|.-..+
T Consensus 163 rTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpii 242 (794)
T KOG0276|consen 163 RTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPII 242 (794)
T ss_pred ccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEE
Confidence 99999999999999999999999999999764 58999999999999999998876654 4799999999999999999
Q ss_pred EEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEE
Q 016187 335 VTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARV 387 (394)
Q Consensus 335 ~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~i 387 (394)
++|+.||+++||+..|-++...+...-+.|++++-.+..+.++.|.++|.|.+
T Consensus 243 isgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 243 ISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred EEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 99999999999999999999999888889999999999999999999987754
No 47
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1e-36 Score=306.13 Aligned_cols=282 Identities=18% Similarity=0.380 Sum_probs=237.8
Q ss_pred eeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCC----e----eeEeecCcccCEEEEEEcCC-CCEEEEEeCCCc
Q 016187 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG----D----WASEIQGHKDSVSSLAFSMD-GQLLASGGLDGL 130 (394)
Q Consensus 60 ~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~----~----~~~~~~~h~~~V~~v~~s~~-g~~l~t~s~d~~ 130 (394)
+.+|.+.|++++|+|+ +.+|||||.|++|+||+.... . ....+. +...|.+++|+|. +.+|++++.|++
T Consensus 479 ~~~~~~~V~~i~fs~d-g~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~ 556 (793)
T PLN00181 479 LLNSSNLVCAIGFDRD-GEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGV 556 (793)
T ss_pred ccCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCe
Confidence 3458999999999995 678999999999999997532 1 122333 3467999999874 789999999999
Q ss_pred EEEEeCCCCceEEEEecCCCCEEEEEEcC-CCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEEC-CCCCeEEE
Q 016187 131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT-PDGKTICT 208 (394)
Q Consensus 131 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s 208 (394)
|++||+.+++.+..+.+|.+.|++++|+| ++.+|++|+.|+.|++||+.++..+..+..+ ..+.++.|+ +++.+|++
T Consensus 557 v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~lat 635 (793)
T PLN00181 557 VQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAF 635 (793)
T ss_pred EEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEE
Confidence 99999999999889999999999999997 6789999999999999999988887777654 578899995 57999999
Q ss_pred EeCCCcEEEEcCCCCc-eEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC------CcEEEEeccCCCCE
Q 016187 209 GSDDATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT------GKVVSSLVSHTDSI 281 (394)
Q Consensus 209 ~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~------~~~~~~~~~h~~~i 281 (394)
|+.||.|++||+++.+ .+..+.+ |...|.++.|. ++.++++++.|++|++||+.. .+.+..+.+|...+
T Consensus 636 gs~dg~I~iwD~~~~~~~~~~~~~---h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i 711 (793)
T PLN00181 636 GSADHKVYYYDLRNPKLPLCTMIG---HSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVK 711 (793)
T ss_pred EeCCCeEEEEECCCCCccceEecC---CCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCe
Confidence 9999999999998765 3444443 56789999997 678999999999999999974 35778899999999
Q ss_pred EEEEECCCCCeEEEEeCCCcEEEEeCCCCCcce--------------eccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 016187 282 ECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRS--------------TCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWD 347 (394)
Q Consensus 282 ~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--------------~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd 347 (394)
.+++|+|++.+|++|+.|++|++|+.....+.. ...+...|.+++|+|++.+|++|+.+|.|+||+
T Consensus 712 ~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 712 NFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred eEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence 999999999999999999999999975432211 122445699999999999999999999999998
Q ss_pred C
Q 016187 348 S 348 (394)
Q Consensus 348 ~ 348 (394)
+
T Consensus 792 ~ 792 (793)
T PLN00181 792 M 792 (793)
T ss_pred c
Confidence 5
No 48
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=9.5e-40 Score=273.25 Aligned_cols=274 Identities=26% Similarity=0.455 Sum_probs=236.6
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceee
Q 016187 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN 185 (394)
Q Consensus 106 h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~ 185 (394)
..+.|+|+++. ...+++|..|.+|+|||.++-..+..+.+|.+.|.|+.|.. +++++||.|.+|++||++++++++
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhh
Confidence 45789999985 56899999999999999999999999999999999998864 499999999999999999999999
Q ss_pred eecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 016187 186 MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI 265 (394)
Q Consensus 186 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~ 265 (394)
.+-+|...|..+.|+ ..++++++.|.++++||+.....+...+....|...|+.+.|+ .+++++++.|.+|++|++
T Consensus 272 tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~ 347 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWST 347 (499)
T ss_pred HHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEec
Confidence 999999999999997 4599999999999999997765332222222356678887775 569999999999999999
Q ss_pred CCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc-ceeccCCCCEEEEEEeCCCCEEEEEeCCCeEE
Q 016187 266 TTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLP-RSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVR 344 (394)
Q Consensus 266 ~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~ 344 (394)
.++..+.++.+|...|.|+.+. ++++++||.|.+|++||+..+.+ +...+|+.-|.|+.| +.+.+++|+.||+|+
T Consensus 348 st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkik 423 (499)
T KOG0281|consen 348 STCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIK 423 (499)
T ss_pred cceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccceEE
Confidence 9999999999999999998875 78999999999999999987644 445689999999998 557899999999999
Q ss_pred EEECCCCe---------EEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 345 VWDSLSGD---------CVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 345 iwd~~~~~---------~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
+||+.++. |+..+..|.+.|..+.| |...+++++.|.+|.|||+.++
T Consensus 424 vWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 424 VWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred EEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCC
Confidence 99987654 44556779999999998 4588999999999999998765
No 49
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=8.6e-39 Score=256.32 Aligned_cols=286 Identities=24% Similarity=0.340 Sum_probs=256.9
Q ss_pred eEeecCcccCEEEEEEcC---CCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEE
Q 016187 100 ASEIQGHKDSVSSLAFSM---DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMW 176 (394)
Q Consensus 100 ~~~~~~h~~~V~~v~~s~---~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw 176 (394)
..+..||+.+|-.++||| +|-+|++++.|+.-.+-+-.+|..+.++.+|.+.|....++.+....++++.|-+-++|
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw 86 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVW 86 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhh
Confidence 346789999999999984 89999999999999999999999999999999999999999888888999999999999
Q ss_pred eCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCce-EEEEcCCCCcccCeEEEEEcCCCCEEEEEe
Q 016187 177 NADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN-IHVIRGHPYHTEGLTCLTISADSTLALSGS 255 (394)
Q Consensus 177 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~ 255 (394)
|.-++..+..+ .|...|..++|+.|.++|++|+.++.+||||+...+. ...+.+ |..+|..+.|....+.+++++
T Consensus 87 ~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~g---htg~Ir~v~wc~eD~~iLSSa 162 (334)
T KOG0278|consen 87 DAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISG---HTGGIRTVLWCHEDKCILSSA 162 (334)
T ss_pred hhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcC---CCCcceeEEEeccCceEEeec
Confidence 99988877776 4888999999999999999999999999999876542 333443 677899999999999999999
Q ss_pred CCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEE
Q 016187 256 KDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVV 335 (394)
Q Consensus 256 ~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 335 (394)
.|++||+||.++++.++++. -..+|+++-+++++.++.++ ..+.|++||..+.........+..|.+...+|+...++
T Consensus 163 dd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fV 240 (334)
T KOG0278|consen 163 DDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFV 240 (334)
T ss_pred cCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCccccccccccCCCceEE
Confidence 99999999999999999886 45789999999999877554 56789999998877777777778899999999999999
Q ss_pred EEeCCCeEEEEECCCCeEEEEe-ecccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 336 TGCVDGKVRVWDSLSGDCVRTF-SGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 336 sg~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
+|+.|+.++.||..+++.+..+ ++|.++|.+|.|+|+|...|+||.||+||+|...
T Consensus 241 aGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 241 AGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTT 297 (334)
T ss_pred ecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEec
Confidence 9999999999999999999987 8999999999999999999999999999999853
No 50
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=3.4e-38 Score=252.94 Aligned_cols=290 Identities=21% Similarity=0.371 Sum_probs=257.5
Q ss_pred eeeeccCCcEEEEEEcCC--CCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 016187 58 HIFSGHSDEVYSVACSPT--DATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135 (394)
Q Consensus 58 ~~~~~h~~~v~~~~~~p~--~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd 135 (394)
.+-.||+.+|-.++|+|- ++.+|+|++.|+.-++-+-+++.++.++.||++.|++..+..+..+.|+++.|.+-+|||
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 456799999999999983 578899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccc-eeeeecccCcCeEEEEECCCCCeEEEEeCCCc
Q 016187 136 PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-YLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT 214 (394)
Q Consensus 136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 214 (394)
.-+|..++.+. |..-|..++|+.+.++|++|+.+.-+++||+++.+ ....+.+|.+.|..+-|....+.+++.+.|++
T Consensus 88 a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~t 166 (334)
T KOG0278|consen 88 AVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKT 166 (334)
T ss_pred hhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCc
Confidence 99999988876 66678999999999999999999999999998653 45678899999999999988899999999999
Q ss_pred EEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEE
Q 016187 215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAA 294 (394)
Q Consensus 215 i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~ 294 (394)
||+||.+++..++.+.. ..+++++-++++|.++.++ ..++|.+||..+-.+++.+.. ...|++..++|+..+++
T Consensus 167 VRLWD~rTgt~v~sL~~----~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fV 240 (334)
T KOG0278|consen 167 VRLWDHRTGTEVQSLEF----NSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFV 240 (334)
T ss_pred eEEEEeccCcEEEEEec----CCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccC-ccccccccccCCCceEE
Confidence 99999999999888863 4568999999999987665 457899999999888877653 45788999999999999
Q ss_pred EEeCCCcEEEEeCCCCCccee--ccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEE
Q 016187 295 TGSMDQKLIIWDLQHSLPRST--CDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCV 354 (394)
Q Consensus 295 s~s~dg~i~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~ 354 (394)
.|+.|..+..||..+...... .+|..+|.|+.|+|+|..-++||.||+|++|-...++..
T Consensus 241 aGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 241 AGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred ecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 999999999999987654433 679999999999999999999999999999987655433
No 51
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=1.1e-36 Score=266.89 Aligned_cols=307 Identities=21% Similarity=0.290 Sum_probs=238.9
Q ss_pred CCCCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCee-----eEeecCcccCEEEEEEcCCCCEEEEEe
Q 016187 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-----ASEIQGHKDSVSSLAFSMDGQLLASGG 126 (394)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~-----~~~~~~h~~~V~~v~~s~~g~~l~t~s 126 (394)
.|..+...|.+|+..|.++++.|.+. .|+|||-|.+|++||+..... ....+.....|++++||+.|..|+..+
T Consensus 155 IP~shEi~l~hgtk~Vsal~~Dp~Ga-R~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvs 233 (641)
T KOG0772|consen 155 IPGSHEIQLKHGTKIVSALAVDPSGA-RFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVS 233 (641)
T ss_pred CCccceEeccCCceEEEEeeecCCCc-eeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEe
Confidence 68888999999999999999999654 688999999999999875432 122234456799999999999999999
Q ss_pred CCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCC-CCe
Q 016187 127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPD-GKT 205 (394)
Q Consensus 127 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~ 205 (394)
.....+|+|-...+.....++. -+|-|+ ...+||...++|..|+|. .+.
T Consensus 234 g~aqakl~DRdG~~~~e~~KGD------------------------QYI~Dm------~nTKGHia~lt~g~whP~~k~~ 283 (641)
T KOG0772|consen 234 GSAQAKLLDRDGFEIVEFSKGD------------------------QYIRDM------YNTKGHIAELTCGCWHPDNKEE 283 (641)
T ss_pred cCcceeEEccCCceeeeeeccc------------------------hhhhhh------hccCCceeeeeccccccCcccc
Confidence 9999999996544433332221 112222 223589999999999995 457
Q ss_pred EEEEeCCCcEEEEcCCCCc-eEEEEcCCC--CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE---EEEeccCCC
Q 016187 206 ICTGSDDATLRVWNPKSGE-NIHVIRGHP--YHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV---VSSLVSHTD 279 (394)
Q Consensus 206 l~s~~~dg~i~vwd~~~~~-~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~---~~~~~~h~~ 279 (394)
+++++.||++|+||+...+ .+..++... ...-.+++++|+++++.+++|..||+|.+|+..+... ...-.+|..
T Consensus 284 FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~ 363 (641)
T KOG0772|consen 284 FLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLP 363 (641)
T ss_pred eEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCC
Confidence 8999999999999987543 233333221 2233578899999999999999999999999865432 222356776
Q ss_pred --CEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcc-ee---ccCCCCEEEEEEeCCCCEEEEEeC------CCeEEEEE
Q 016187 280 --SIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPR-ST---CDHEDGVTCLMWLGTSKYVVTGCV------DGKVRVWD 347 (394)
Q Consensus 280 --~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~---~~~~~~v~~~~~~~~~~~l~sg~~------dg~i~iwd 347 (394)
.|+||.||++|++|++-+.|+++++||++..... .. ......-+.++|+|+.++|++|.. .|++++||
T Consensus 364 g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d 443 (641)
T KOG0772|consen 364 GQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFD 443 (641)
T ss_pred CCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEe
Confidence 8999999999999999999999999999864221 11 112334567889999999999853 57899999
Q ss_pred CCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 348 SLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 348 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
..+.+.+..+.--...|..+.|+|.-+.|+.|+.||++++|-
T Consensus 444 ~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 444 RMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred ccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 999999998887788899999999999999999999999873
No 52
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=7.9e-39 Score=273.18 Aligned_cols=296 Identities=21% Similarity=0.362 Sum_probs=253.2
Q ss_pred CCCCCCCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCe--eeEeecCcccCEEEEEEcCCCCEEEEEe
Q 016187 49 NTEQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD--WASEIQGHKDSVSSLAFSMDGQLLASGG 126 (394)
Q Consensus 49 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~--~~~~~~~h~~~V~~v~~s~~g~~l~t~s 126 (394)
....|......+..|.++|..+.|-+. ...|+|||.|..|++|++...+ .+.+|.|-.++|+++.|.+++.++++++
T Consensus 160 ~~~lpS~~~~~ld~h~gev~~v~~l~~-sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas 238 (459)
T KOG0288|consen 160 EDTLPSRALFVLDAHEGEVHDVEFLRN-SDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAAS 238 (459)
T ss_pred hcccchhhhhhhhccccccceeEEccC-cchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeec
Confidence 345677788888999999999999984 5679999999999999987665 7788999999999999999999999999
Q ss_pred CCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeE
Q 016187 127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI 206 (394)
Q Consensus 127 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 206 (394)
.|+.+++|++...+...++.+|.+.|+++.|......+++|+.|.+|++||+....+.+.+.. ...+..+..+ ...+
T Consensus 239 ~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~ 315 (459)
T KOG0288|consen 239 NDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDV 315 (459)
T ss_pred CCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cccccceEec--ceee
Confidence 999999999999999999999999999999998877799999999999999998877776542 2334444444 5678
Q ss_pred EEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEE
Q 016187 207 CTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGF 286 (394)
Q Consensus 207 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~ 286 (394)
++|..|++||+||.++......+.. .+.|+++..++++..+++++.|.++.++|+++..+...+.+.
T Consensus 316 ~SgH~DkkvRfwD~Rs~~~~~sv~~----gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~--------- 382 (459)
T KOG0288|consen 316 ISGHFDKKVRFWDIRSADKTRSVPL----GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAE--------- 382 (459)
T ss_pred eecccccceEEEeccCCceeeEeec----CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecc---------
Confidence 9999999999999999888777664 247999999999999999999999999999988766554321
Q ss_pred CCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccC--ce
Q 016187 287 SRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRD--AI 364 (394)
Q Consensus 287 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~--~v 364 (394)
+ ..+.+. ++.+.|+|++.|+++||.||.|+||++.++++.+.+..... .|
T Consensus 383 ---g-----------------------~k~asD--wtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI 434 (459)
T KOG0288|consen 383 ---G-----------------------FKCASD--WTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAI 434 (459)
T ss_pred ---c-----------------------cccccc--cceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcce
Confidence 1 011111 56778999999999999999999999999999998875443 59
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 365 QAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 365 ~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
++++|+|.|.+|++++.++.+++|.
T Consensus 435 ~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 435 TSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred EEEEEcCCCchhhcccCCcceEecC
Confidence 9999999999999999999999994
No 53
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.4e-38 Score=261.86 Aligned_cols=282 Identities=25% Similarity=0.400 Sum_probs=249.3
Q ss_pred CcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEE--------ecCCCCEEEEEEcCCCCEEEEecCCCeEEEE
Q 016187 105 GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL--------EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMW 176 (394)
Q Consensus 105 ~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw 176 (394)
|.+.-+.|..|||||+||++||.||.|.+|+..+|+....+ .-+..+|.++.|+.+...+++|+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 45566889999999999999999999999999999876543 3467799999999999999999999999999
Q ss_pred eCCccceeeeec-ccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEe
Q 016187 177 NADRAAYLNMFS-GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS 255 (394)
Q Consensus 177 ~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~ 255 (394)
.+.++.+++.|. +|...|+|+.|+.|+..+++++.|.++|+.-+++|++++.+++ |...|+...|.++|..+++++
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrG---HsSyvn~a~ft~dG~~iisaS 367 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRG---HSSYVNEATFTDDGHHIISAS 367 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcC---ccccccceEEcCCCCeEEEec
Confidence 999999999887 8999999999999999999999999999999999999988887 466788999999999999999
Q ss_pred CCCcEEEEECCCCcEEEEeccC--CCCEEEEEECCC-CCeEEEEeCCCcEEEEeCCCCCcceecc---CCCCEEEEEEeC
Q 016187 256 KDGSVHMVNITTGKVVSSLVSH--TDSIECIGFSRS-SPWAATGSMDQKLIIWDLQHSLPRSTCD---HEDGVTCLMWLG 329 (394)
Q Consensus 256 ~dg~i~i~d~~~~~~~~~~~~h--~~~i~~v~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~ 329 (394)
.||++++|+.++..++.++... .-+|+.+..-|. ...++.+...+++.|-+++....+.... ..+...+++.+|
T Consensus 368 sDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSp 447 (508)
T KOG0275|consen 368 SDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSP 447 (508)
T ss_pred CCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecC
Confidence 9999999999999999887643 456788777664 4578899999999999987654443321 123355667899
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 330 TSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 330 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
.|.++...+.|+.++.|.+.+|++.+.+.-|...|..++-+|+.+.+||-+.||.+++|.
T Consensus 448 kGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 448 KGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 999999999999999999999999999999999999999999999999999999999995
No 54
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=3.6e-36 Score=254.49 Aligned_cols=277 Identities=27% Similarity=0.491 Sum_probs=237.6
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCC---EEEEecCCCeEEEEeCCccc
Q 016187 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH---IVLAGSEDSTVWMWNADRAA 182 (394)
Q Consensus 106 h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~s~d~~i~iw~~~~~~ 182 (394)
|.+.|.++... ++.++||++||.+++||. .|+...++.+|.+++..++|.-.+. .+++++.|.++++|..+.+.
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~ 180 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGE 180 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCch
Confidence 88999999887 679999999999999996 5888899999999999888865443 59999999999999876543
Q ss_pred ----eeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCC-------------------------ceEEEEcCCC
Q 016187 183 ----YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG-------------------------ENIHVIRGHP 233 (394)
Q Consensus 183 ----~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-------------------------~~~~~~~~~~ 233 (394)
.++...||...|-+++..++|..+++|+.|.+|++|+..+. ..+..+.
T Consensus 181 ~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~--- 257 (423)
T KOG0313|consen 181 NKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE--- 257 (423)
T ss_pred hhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEec---
Confidence 23445699999999999999999999999999999993211 0112222
Q ss_pred CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc-
Q 016187 234 YHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLP- 312 (394)
Q Consensus 234 ~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~- 312 (394)
.|..+|..+.|++ ...+++++.|.+|+.||+.+++.+.++.. ...++|+..+|...+|++|+.|..+++||.++..-
T Consensus 258 GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs 335 (423)
T KOG0313|consen 258 GHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGS 335 (423)
T ss_pred ccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCc
Confidence 3678899999988 77889999999999999999998888764 57899999999999999999999999999987532
Q ss_pred ---ceeccCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCe-EEEEeecccCceeEEEEccCCCEEEEEeCCCcEEE
Q 016187 313 ---RSTCDHEDGVTCLMWLGTSK-YVVTGCVDGKVRVWDSLSGD-CVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARV 387 (394)
Q Consensus 313 ---~~~~~~~~~v~~~~~~~~~~-~l~sg~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~i 387 (394)
....+|...|.++.|+|... .|++|+.|+++++||+++.+ .+..+.+|.+.|.++.|+ ++.+|+|||.|.+|+|
T Consensus 336 ~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i 414 (423)
T KOG0313|consen 336 VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRI 414 (423)
T ss_pred eeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEE
Confidence 24568999999999999764 68899999999999999888 899999999999999997 5779999999999999
Q ss_pred Eecc
Q 016187 388 FEIA 391 (394)
Q Consensus 388 w~~~ 391 (394)
+.-.
T Consensus 415 ~~~~ 418 (423)
T KOG0313|consen 415 FKGS 418 (423)
T ss_pred eccc
Confidence 9743
No 55
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=5.8e-37 Score=253.01 Aligned_cols=289 Identities=24% Similarity=0.371 Sum_probs=241.2
Q ss_pred EeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC------------C------ceEEEEecCCCCEEEEEEcCCCC
Q 016187 101 SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS------------G------NLKCTLEGPGGGVEWVSWHPRGH 162 (394)
Q Consensus 101 ~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~------------~------~~~~~~~~~~~~v~~~~~~~~~~ 162 (394)
..+..|+.++++.+|||||.++||||.|..|+|.|++. + .++.++..|.+.|+++.|||...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 35678999999999999999999999999999999751 1 24567788999999999999999
Q ss_pred EEEEecCCCeEEEEeCCccceeeeec--ccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeE
Q 016187 163 IVLAGSEDSTVWMWNADRAAYLNMFS--GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLT 240 (394)
Q Consensus 163 ~l~~~s~d~~i~iw~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~ 240 (394)
+|++|+.|++++++|.......+.++ ....+|.++.|+|.|.+|+.|...-++|+||+.+-++...-.....|...|+
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~ 265 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAIT 265 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccccee
Confidence 99999999999999987543333222 2456899999999999999999999999999999888665555567889999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEec-cCC-CCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceecc-
Q 016187 241 CLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV-SHT-DSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCD- 317 (394)
Q Consensus 241 ~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-~h~-~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~- 317 (394)
++.+++.+++.++|+.||.|++||--+++++.++. +|. ..|.+..|..+++|+++.+.|..+++|.+.+..+.....
T Consensus 266 ~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtG 345 (430)
T KOG0640|consen 266 QVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTG 345 (430)
T ss_pred EEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEec
Confidence 99999999999999999999999999999998874 454 468889999999999999999999999998765443321
Q ss_pred -----CCCCEEEEEEeCCCCEEEEEe-CCCeEEEEECCCCeEEEEee-cccCceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 318 -----HEDGVTCLMWLGTSKYVVTGC-VDGKVRVWDSLSGDCVRTFS-GHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 318 -----~~~~v~~~~~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
...--+...|+....|++.-. ..+.+.-||.+++..+..+. ||++.+..+.-+|.++.+++||+|..+|+|.
T Consensus 346 Ag~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 346 AGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred CCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence 011123345666666766543 35779999999998877664 8999999999999999999999999999995
No 56
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=3.4e-36 Score=254.62 Aligned_cols=285 Identities=26% Similarity=0.446 Sum_probs=239.9
Q ss_pred CCCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCC---CEEEEEeCCC
Q 016187 53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG---QLLASGGLDG 129 (394)
Q Consensus 53 ~~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g---~~l~t~s~d~ 129 (394)
|+++.+-| -|.+-|.+|...+ ..+.||+.||++++|+. .|+.+.++.||.++|.+++|--.. ..|+++|.|.
T Consensus 95 aP~pl~~~-~hdDWVSsv~~~~---~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dq 169 (423)
T KOG0313|consen 95 APKPLQCF-LHDDWVSSVKGAS---KWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQ 169 (423)
T ss_pred CCCccccc-cchhhhhhhcccC---ceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCc
Confidence 34444434 3889999988763 46889999999999996 678889999999999988885433 3599999999
Q ss_pred cEEEEeCCCCceE----EEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCc-------------------------
Q 016187 130 LVQIWDPSSGNLK----CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR------------------------- 180 (394)
Q Consensus 130 ~i~vwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~------------------------- 180 (394)
++++|..+.++.. ....+|...|.+++-.+++..+++||.|.++.+|+...
T Consensus 170 tl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~ 249 (423)
T KOG0313|consen 170 TLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGT 249 (423)
T ss_pred eEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccc
Confidence 9999998877543 23358999999999999999999999999999999321
Q ss_pred cceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcE
Q 016187 181 AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260 (394)
Q Consensus 181 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i 260 (394)
..++..+.||..+|.++.|++ ...+++++.|.+|+.||+.+++....+.. ...++|+..+|...++++|+.|..|
T Consensus 250 r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~----~ksl~~i~~~~~~~Ll~~gssdr~i 324 (423)
T KOG0313|consen 250 RTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT----NKSLNCISYSPLSKLLASGSSDRHI 324 (423)
T ss_pred cCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec----CcceeEeecccccceeeecCCCCce
Confidence 123456789999999999998 67899999999999999999988776653 4568999999999999999999999
Q ss_pred EEEECCCCc---EEEEeccCCCCEEEEEECCCCC-eEEEEeCCCcEEEEeCCCCC-cc-eeccCCCCEEEEEEeCCCCEE
Q 016187 261 HMVNITTGK---VVSSLVSHTDSIECIGFSRSSP-WAATGSMDQKLIIWDLQHSL-PR-STCDHEDGVTCLMWLGTSKYV 334 (394)
Q Consensus 261 ~i~d~~~~~---~~~~~~~h~~~i~~v~~~~~~~-~l~s~s~dg~i~iwd~~~~~-~~-~~~~~~~~v~~~~~~~~~~~l 334 (394)
++||.+++. +..++.+|...|.++.|+|... .|++++.|+++++||++... +. ...+|.+.|.++.|. ++.++
T Consensus 325 rl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~I 403 (423)
T KOG0313|consen 325 RLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLI 403 (423)
T ss_pred eecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceE
Confidence 999998763 4577899999999999999876 48899999999999998764 33 345799999999997 46699
Q ss_pred EEEeCCCeEEEEEC
Q 016187 335 VTGCVDGKVRVWDS 348 (394)
Q Consensus 335 ~sg~~dg~i~iwd~ 348 (394)
++|+.|.+|+|+..
T Consensus 404 vSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 404 VSGGADNKLRIFKG 417 (423)
T ss_pred EeccCcceEEEecc
Confidence 99999999999864
No 57
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=7.8e-36 Score=279.95 Aligned_cols=251 Identities=31% Similarity=0.554 Sum_probs=227.4
Q ss_pred ceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEc-CCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 016187 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI-NQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW 134 (394)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~-~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vw 134 (394)
..+.+.+|...|+.++|+|+ +.++++|+.|+++++||+ ..+..+.++++|...|++++|+|+|+++++|+.|++|+||
T Consensus 195 ~~~~l~~h~~~v~~~~fs~d-~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriW 273 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSPD-GSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIW 273 (456)
T ss_pred hhccccccccceeeeEECCC-CcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEE
Confidence 34555799999999999995 568999999999999999 5558889999999999999999999999999999999999
Q ss_pred eCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccc--eeeeecccCcC--eEEEEECCCCCeEEEEe
Q 016187 135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA--YLNMFSGHGSS--VTCGDFTPDGKTICTGS 210 (394)
Q Consensus 135 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~--~~~~~~~h~~~--v~~~~~~~~~~~l~s~~ 210 (394)
|+.+++....+.+|.++|+.++|++++++|++++.|+.|++||+.++. +...+.++... ++++.|+|+++++++++
T Consensus 274 d~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~ 353 (456)
T KOG0266|consen 274 DVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS 353 (456)
T ss_pred eccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec
Confidence 999999999999999999999999999999999999999999999988 56777777655 89999999999999999
Q ss_pred CCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccC-CCCEEEEEECCC
Q 016187 211 DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSH-TDSIECIGFSRS 289 (394)
Q Consensus 211 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h-~~~i~~v~~~~~ 289 (394)
.|+++++||+..+..+..+.++......+.+...++.+.++++|+.|+.|++||+.++..+..+.+| ...+..+.++|.
T Consensus 354 ~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~ 433 (456)
T KOG0266|consen 354 LDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPT 433 (456)
T ss_pred CCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCC
Confidence 9999999999999988888876543224555566889999999999999999999999999999999 889999999999
Q ss_pred CCeEEEEe--CCCcEEEEeC
Q 016187 290 SPWAATGS--MDQKLIIWDL 307 (394)
Q Consensus 290 ~~~l~s~s--~dg~i~iwd~ 307 (394)
..++++++ .|+.+++|..
T Consensus 434 ~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 434 ENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred cCeeeecCcCCCceEEEecC
Confidence 99999998 7899999964
No 58
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=3.6e-35 Score=236.96 Aligned_cols=286 Identities=21% Similarity=0.381 Sum_probs=248.4
Q ss_pred EeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEE--EEecCCCCEEEEEEcCC-CCEEEEecCCCeEEEEe
Q 016187 101 SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC--TLEGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWN 177 (394)
Q Consensus 101 ~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~-~~~l~~~s~d~~i~iw~ 177 (394)
+.+++|...|.+|+|+.+|.+|++|+.|+++++|++...+... ...+|.+.|..++|+|. ...+++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 5678999999999999999999999999999999998775543 34678889999999986 45899999999999999
Q ss_pred CCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCC
Q 016187 178 ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD 257 (394)
Q Consensus 178 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~d 257 (394)
.+++++..........+. +.|+|+|++++.+..|..|...|.++.+.+...+. ...+.-++|+.++.+++.-...
T Consensus 94 ~r~~k~~~~i~~~~eni~-i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~----~~e~ne~~w~~~nd~Fflt~Gl 168 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENIN-ITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF----KFEVNEISWNNSNDLFFLTNGL 168 (313)
T ss_pred eccCcEEEEeeccCcceE-EEEcCCCCEEEEecCcccEEEEEecccceeehhcc----cceeeeeeecCCCCEEEEecCC
Confidence 999998877765555554 68999999999999999999999988776554332 2346677888888888888888
Q ss_pred CcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcce-eccCCCCEEEEEEeCCCCEEEE
Q 016187 258 GSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRS-TCDHEDGVTCLMWLGTSKYVVT 336 (394)
Q Consensus 258 g~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s 336 (394)
|+|.|....+.+++.++++|.....|+.|+|+|+++|+|+.|..+.+||+....+.. ...+.-+|..+.|+.++++||+
T Consensus 169 G~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lAS 248 (313)
T KOG1407|consen 169 GCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLAS 248 (313)
T ss_pred ceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeec
Confidence 999999999999999999999999999999999999999999999999998765443 4467788999999999999999
Q ss_pred EeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCC---------CcEEEEeccC
Q 016187 337 GCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLD---------GTARVFEIAD 392 (394)
Q Consensus 337 g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d---------g~i~iw~~~~ 392 (394)
||.|..|-|=++.+|..+..+. +.++...|+|+|...+||-+++| |.+++|-+.+
T Consensus 249 aSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~~ 312 (313)
T KOG1407|consen 249 ASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLSN 312 (313)
T ss_pred cCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCCC
Confidence 9999999999999999998887 68889999999999999988764 6788887654
No 59
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-34 Score=236.04 Aligned_cols=284 Identities=18% Similarity=0.285 Sum_probs=237.2
Q ss_pred eeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecC--CCeEEEE
Q 016187 99 WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE--DSTVWMW 176 (394)
Q Consensus 99 ~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~--d~~i~iw 176 (394)
....++.-...|.++.|+++|.+|++++.|.++++||..+++.++++..+.-.+..++|....+.++.++. |.+|+..
T Consensus 6 ~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryL 85 (311)
T KOG1446|consen 6 PAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYL 85 (311)
T ss_pred cccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEE
Confidence 33455556788999999999999999999999999999999999999888888999999888887777776 8999999
Q ss_pred eCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeC
Q 016187 177 NADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK 256 (394)
Q Consensus 177 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~ 256 (394)
++.+.++++.+.||...|+.++.+|-+..++|++.|++||+||++..++...+.. .+-...+++|+|-++|++..
T Consensus 86 sl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~-----~~~pi~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 86 SLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL-----SGRPIAAFDPEGLIFALANG 160 (311)
T ss_pred EeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec-----CCCcceeECCCCcEEEEecC
Confidence 9999999999999999999999999999999999999999999998887666542 22345789999999999998
Q ss_pred CCcEEEEECCCC--cEEEEec---cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceec-cCCC---CEEEEEE
Q 016187 257 DGSVHMVNITTG--KVVSSLV---SHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTC-DHED---GVTCLMW 327 (394)
Q Consensus 257 dg~i~i~d~~~~--~~~~~~~---~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~---~v~~~~~ 327 (394)
...|+++|++.- .+..++. .-....+.+.|||+|++++.+...+.+.+.|.-.+...... .+.. -.....|
T Consensus 161 ~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~f 240 (311)
T KOG1446|consen 161 SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATF 240 (311)
T ss_pred CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEE
Confidence 889999999863 2333333 33567889999999999999999999999997655433222 2211 1246678
Q ss_pred eCCCCEEEEEeCCCeEEEEECCCCeEEEEeec-ccCceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 328 LGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSG-HRDAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 328 ~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
.|+++++++|+.||+|.+|++.++..+..+.+ +.+++.++.|+|...+++|+ +..+.+|=
T Consensus 241 tPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~ 301 (311)
T KOG1446|consen 241 TPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWL 301 (311)
T ss_pred CCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEe
Confidence 99999999999999999999999999999998 78999999999966666555 45577773
No 60
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-34 Score=265.89 Aligned_cols=318 Identities=20% Similarity=0.322 Sum_probs=258.3
Q ss_pred ceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 016187 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135 (394)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd 135 (394)
....|..|.++|..|+|||+. -+|+|||.|..|+||++.+.+++.+|.||-+.|+.+.|++.-..++++|.|.+|+||+
T Consensus 43 li~rFdeHdGpVRgv~FH~~q-plFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWN 121 (1202)
T KOG0292|consen 43 LIDRFDEHDGPVRGVDFHPTQ-PLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWN 121 (1202)
T ss_pred HHhhhhccCCccceeeecCCC-CeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEe
Confidence 445588999999999999964 5899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccc-----------------------------eeee
Q 016187 136 PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-----------------------------YLNM 186 (394)
Q Consensus 136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~-----------------------------~~~~ 186 (394)
..++++++.+.+|...|.|.+|||...+++++|-|.+|++||+...+ ....
T Consensus 122 wqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~V 201 (1202)
T KOG0292|consen 122 WQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHV 201 (1202)
T ss_pred ccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeee
Confidence 99999999999999999999999999999999999999999974211 1234
Q ss_pred ecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 016187 187 FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT 266 (394)
Q Consensus 187 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~ 266 (394)
+.||...|+.++|+|.-..++||+.|+.|++|.+..-+.. .+.....|...|+++-|+|...++++.++|++|++||+.
T Consensus 202 LEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaW-EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~ 280 (1202)
T KOG0292|consen 202 LEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW-EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMT 280 (1202)
T ss_pred ecccccccceEEecCCcceEEecCCcceeeEEEeccccce-eehhhhcccCCcceEEecCccceeEecCCCccEEEEecc
Confidence 6789999999999999999999999999999998654432 222233467889999999999999999999999999999
Q ss_pred CCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 016187 267 TGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVW 346 (394)
Q Consensus 267 ~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iw 346 (394)
..+.++++....+.-..++-+|...++|.|- |+-+.+|-+....+ ..|+ .++.|+-. .|..|+.+
T Consensus 281 kRt~v~tfrrendRFW~laahP~lNLfAAgH-DsGm~VFkleRErp---------a~~v----~~n~LfYv-kd~~i~~~ 345 (1202)
T KOG0292|consen 281 KRTSVQTFRRENDRFWILAAHPELNLFAAGH-DSGMIVFKLERERP---------AYAV----NGNGLFYV-KDRFIRSY 345 (1202)
T ss_pred cccceeeeeccCCeEEEEEecCCcceeeeec-CCceEEEEEcccCc---------eEEE----cCCEEEEE-ccceEEee
Confidence 9999999987788899999999999888765 55566666553322 2222 22233322 38899999
Q ss_pred ECCCCeEE--EEeecc---cCceeEEEEccCCCEEEEEe--CCCcEEEEec
Q 016187 347 DSLSGDCV--RTFSGH---RDAIQAISVSAHQDFLVSVS--LDGTARVFEI 390 (394)
Q Consensus 347 d~~~~~~~--~~~~~h---~~~v~~l~~~~~~~~l~s~s--~dg~i~iw~~ 390 (394)
|.++.+-. ..++.- ..+..++.++|..+.+.-++ +.|.-.++.+
T Consensus 346 d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~i 396 (1202)
T KOG0292|consen 346 DLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQI 396 (1202)
T ss_pred eccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEe
Confidence 98885533 334432 36788999999877666553 3344444443
No 61
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.1e-36 Score=252.90 Aligned_cols=286 Identities=24% Similarity=0.363 Sum_probs=249.0
Q ss_pred eeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEee--------cCcccCEEEEEEcCCCCEEEEEeCCCc
Q 016187 59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI--------QGHKDSVSSLAFSMDGQLLASGGLDGL 130 (394)
Q Consensus 59 ~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~--------~~h~~~V~~v~~s~~g~~l~t~s~d~~ 130 (394)
+--|.+..+.|..|+| ++++|+||+.||-+.+|++.+|++...+ .-|.++|.|+.||.|...||+|+.||.
T Consensus 208 IKFg~KSh~EcA~FSP-DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGk 286 (508)
T KOG0275|consen 208 IKFGQKSHVECARFSP-DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGK 286 (508)
T ss_pred eecccccchhheeeCC-CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCc
Confidence 3346677889999999 5789999999999999999998866543 457899999999999999999999999
Q ss_pred EEEEeCCCCceEEEEe-cCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEE
Q 016187 131 VQIWDPSSGNLKCTLE-GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG 209 (394)
Q Consensus 131 i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 209 (394)
|+||.+.+|.++..+. .|...|+++.|+.++..+++++.|.++++.-+.++++++.+.||.+.|+.+.|.++|..++++
T Consensus 287 IKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisa 366 (508)
T KOG0275|consen 287 IKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISA 366 (508)
T ss_pred EEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEe
Confidence 9999999999988776 788999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeccC---CCCEEEEE
Q 016187 210 SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTGKVVSSLVSH---TDSIECIG 285 (394)
Q Consensus 210 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h---~~~i~~v~ 285 (394)
+.||+|++|+.++.+++.+++... ...+|.++..-| +...++++....++.+.++ .|+.++++... .+..-+..
T Consensus 367 SsDgtvkvW~~KtteC~~Tfk~~~-~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~ 444 (508)
T KOG0275|consen 367 SSDGTVKVWHGKTTECLSTFKPLG-TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAI 444 (508)
T ss_pred cCCccEEEecCcchhhhhhccCCC-CcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEE
Confidence 999999999999999988887543 345677777666 4568888999999999998 56778777542 23344567
Q ss_pred ECCCCCeEEEEeCCCcEEEEeCCCCCc-ceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 016187 286 FSRSSPWAATGSMDQKLIIWDLQHSLP-RSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWD 347 (394)
Q Consensus 286 ~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd 347 (394)
.+|.|.|+.+.+.|+.+..|...+... +....|+..|..++.+|..+.|++-+.||.+++|.
T Consensus 445 lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 445 LSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 899999999999999999999876543 44556888899999999999999999999999994
No 62
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=1.9e-34 Score=269.98 Aligned_cols=288 Identities=27% Similarity=0.525 Sum_probs=252.0
Q ss_pred eeeec-cCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEe-ecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 016187 58 HIFSG-HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASE-IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135 (394)
Q Consensus 58 ~~~~~-h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~-~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd 135 (394)
..+.+ |...+.+..|++ ..+.+++.|.++++|+..++..+.. +.||.+.|++++|..-+.+|++|+.|.++++||
T Consensus 201 ~~~~~~~~~~~~~~q~~~---~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd 277 (537)
T KOG0274|consen 201 KVLLGTDDHVVLCLQLHD---GFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWD 277 (537)
T ss_pred eeecccCcchhhhheeec---CeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEe
Confidence 44454 566788888873 3688999999999999999988887 999999999999988788999999999999999
Q ss_pred CCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcE
Q 016187 136 PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATL 215 (394)
Q Consensus 136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i 215 (394)
..+|++.+.+.+|...+.++...+ .++++|+.|.+|++|++.++.++..+.+|..+|.++.++ +.++++|+.|++|
T Consensus 278 ~~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v 353 (537)
T KOG0274|consen 278 CSTGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTV 353 (537)
T ss_pred cCCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceE
Confidence 999999999999999998887654 467889999999999999999999999999999999987 8899999999999
Q ss_pred EEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-cEEEEeccCCCCEEEEEECCCCCeEE
Q 016187 216 RVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG-KVVSSLVSHTDSIECIGFSRSSPWAA 294 (394)
Q Consensus 216 ~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~-~~~~~~~~h~~~i~~v~~~~~~~~l~ 294 (394)
++||+.++++++.+.+ |...|.++.+.+. ..+++|+.|++|++||+++. +++.++..|..-+..+.+ .+++|+
T Consensus 354 ~VW~~~~~~cl~sl~g---H~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lv 427 (537)
T KOG0274|consen 354 KVWDPRTGKCLKSLSG---HTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLV 427 (537)
T ss_pred EEEEhhhceeeeeecC---CcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeE
Confidence 9999999999999887 5778999988766 89999999999999999999 999999999988866554 467899
Q ss_pred EEeCCCcEEEEeCCCCCcceecc--CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecc
Q 016187 295 TGSMDQKLIIWDLQHSLPRSTCD--HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGH 360 (394)
Q Consensus 295 s~s~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h 360 (394)
+++.|++|++||.....+..... |...|.++.+. ...+++++.+|++++||++++++.+.+-.+
T Consensus 428 s~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l~~~ 493 (537)
T KOG0274|consen 428 SSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTLLST 493 (537)
T ss_pred eccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhhhhc
Confidence 99999999999998776655443 34677777765 468899999999999999999998876433
No 63
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=1.5e-34 Score=248.45 Aligned_cols=282 Identities=21% Similarity=0.349 Sum_probs=253.1
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeee
Q 016187 108 DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF 187 (394)
Q Consensus 108 ~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~ 187 (394)
..+.++...|....++||+.|..+.++|..+++.+.++++|...|+++.|+|+...+++++.|..|++|...........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 56888888888789999999999999999999999999999999999999999999999999999999999877777778
Q ss_pred cccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 016187 188 SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT 267 (394)
Q Consensus 188 ~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~ 267 (394)
..|..+|+.+..+|.|.||++++.||+..+.|++++.++...... ...-.+++..|+|||.++.+|..|+.++|||+.+
T Consensus 300 ~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~-~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks 378 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE-TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS 378 (506)
T ss_pred ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec-cccceeEEeeEcCCceEEeccCCCceEEEEEcCC
Confidence 899999999999999999999999999999999999987665431 1223589999999999999999999999999999
Q ss_pred CcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceec--cCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 016187 268 GKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTC--DHEDGVTCLMWLGTSKYVVTGCVDGKVRV 345 (394)
Q Consensus 268 ~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~sg~~dg~i~i 345 (394)
+..+..|.+|+++|.+++|+.+|-|||+++.|+.|++||+++......+ ....++.++.|.+.|.||+.++.|=.|++
T Consensus 379 ~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~ 458 (506)
T KOG0289|consen 379 QTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYI 458 (506)
T ss_pred ccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEE
Confidence 9999999999999999999999999999999999999999876443333 23346999999999999999988877887
Q ss_pred EE--CCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEec
Q 016187 346 WD--SLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEI 390 (394)
Q Consensus 346 wd--~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~ 390 (394)
++ ...+.++..+..|.+..+.+.|..+.++++++|.|...+++.+
T Consensus 459 ~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 459 CKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 76 3467788899999999999999999999999999999999875
No 64
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.9e-35 Score=232.85 Aligned_cols=246 Identities=22% Similarity=0.391 Sum_probs=219.3
Q ss_pred eEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcC
Q 016187 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP 220 (394)
Q Consensus 141 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 220 (394)
....+..++++|..+.|+.+|++.++++.|.++++|+...+.+++++.+|...|..++.+.|...|++|+.|+.+.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC--cEEEEeccCCCCEEEEEECCCCCeEEEEeC
Q 016187 221 KSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG--KVVSSLVSHTDSIECIGFSRSSPWAATGSM 298 (394)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~--~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~ 298 (394)
.+|+.+..+++| ...|+.+.|+.+...+++|+-|.++++||.++. ++++.+....+.|.++.+.. ..+++||.
T Consensus 89 ~TGkv~Rr~rgH---~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~--heIvaGS~ 163 (307)
T KOG0316|consen 89 NTGKVDRRFRGH---LAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE--HEIVAGSV 163 (307)
T ss_pred ccCeeeeecccc---cceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc--cEEEeecc
Confidence 999999998874 567999999999999999999999999999864 57777777788999988874 46899999
Q ss_pred CCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEE--EEccCCCEE
Q 016187 299 DQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAI--SVSAHQDFL 376 (394)
Q Consensus 299 dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l--~~~~~~~~l 376 (394)
||+++.||++...... -....+|+|+.|+++++.+++++.|+++++.|-.+|++++.++||.+.-..+ .++.....+
T Consensus 164 DGtvRtydiR~G~l~s-Dy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV 242 (307)
T KOG0316|consen 164 DGTVRTYDIRKGTLSS-DYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHV 242 (307)
T ss_pred CCcEEEEEeecceeeh-hhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeE
Confidence 9999999998764322 2235679999999999999999999999999999999999999998765444 455666789
Q ss_pred EEEeCCCcEEEEeccC
Q 016187 377 VSVSLDGTARVFEIAD 392 (394)
Q Consensus 377 ~s~s~dg~i~iw~~~~ 392 (394)
++||.||.|.+||+.+
T Consensus 243 ~sgSEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 243 FSGSEDGKVYFWDLVD 258 (307)
T ss_pred EeccCCceEEEEEecc
Confidence 9999999999999865
No 65
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.5e-36 Score=252.48 Aligned_cols=289 Identities=18% Similarity=0.317 Sum_probs=240.6
Q ss_pred eeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 016187 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDP 136 (394)
Q Consensus 57 ~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~ 136 (394)
+..+.||.+.|+|+|=+|.....+|||+.||.|++||+.+.+++.++++|.+.|+.++++. ..+++++.|.+|+.|..
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 4556899999999999997657899999999999999999999999999999999999987 67889999999999987
Q ss_pred CCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCC-CeEEEEeCCCcE
Q 016187 137 SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG-KTICTGSDDATL 215 (394)
Q Consensus 137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i 215 (394)
.. ....++.+. ..+..+.-+..+..+++|+. .|-|||.+...+++.+.-....+.++.|+|.. ..|++|+.|++|
T Consensus 137 ~~-~p~~tilg~-s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsI 212 (433)
T KOG0268|consen 137 DG-PPLHTILGK-SVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSI 212 (433)
T ss_pred cC-Ccceeeecc-ccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCce
Confidence 64 455555432 34555666666777888765 58899999888888888788889999999954 567888899999
Q ss_pred EEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-cEEEEeccCCCCEEEEEECCCCCeEE
Q 016187 216 RVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG-KVVSSLVSHTDSIECIGFSRSSPWAA 294 (394)
Q Consensus 216 ~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~-~~~~~~~~h~~~i~~v~~~~~~~~l~ 294 (394)
.+||+++++.++.+.. .-.-+.++|+|++-.+++|++|..++.+|++.. .++....+|...|.+|+|||.|+-++
T Consensus 213 vLyD~R~~~Pl~KVi~----~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efv 288 (433)
T KOG0268|consen 213 VLYDLRQASPLKKVIL----TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFV 288 (433)
T ss_pred EEEecccCCccceeee----eccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhc
Confidence 9999999988766542 223457899998889999999999999999875 46677788999999999999999999
Q ss_pred EEeCCCcEEEEeCCCCCcceec--cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEE
Q 016187 295 TGSMDQKLIIWDLQHSLPRSTC--DHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVR 355 (394)
Q Consensus 295 s~s~dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~ 355 (394)
+||.|.+|+||.......+... ..-..|.|+.|+.|.+|+++||.|+.|++|.....+.+.
T Consensus 289 sgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklg 351 (433)
T KOG0268|consen 289 SGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLG 351 (433)
T ss_pred cccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcC
Confidence 9999999999998765433221 122458999999999999999999999999876655444
No 66
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=4.9e-34 Score=267.23 Aligned_cols=274 Identities=28% Similarity=0.549 Sum_probs=244.9
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEE-EecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcccee
Q 016187 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT-LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL 184 (394)
Q Consensus 106 h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~ 184 (394)
|...+.+..|. +.++++++.|.+|++|+..++..+.. +.+|.+.|..+++..-+.+|++|+.|.++++||..++.+.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~ 284 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT 284 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence 56678888888 56899999999999999999998877 9999999999999987889999999999999999999999
Q ss_pred eeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 016187 185 NMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN 264 (394)
Q Consensus 185 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d 264 (394)
..+.+|...+.++... ...+++|+.|.+|++|++.+++.+..+.+ |...|.++.++ +.++++|+.|++|++||
T Consensus 285 ~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~---h~~~V~~v~~~--~~~lvsgs~d~~v~VW~ 357 (537)
T KOG0274|consen 285 HSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRG---HTGPVNCVQLD--EPLLVSGSYDGTVKVWD 357 (537)
T ss_pred EEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEecc---ccccEEEEEec--CCEEEEEecCceEEEEE
Confidence 9999999999988764 45788899999999999999999998886 67889999987 88999999999999999
Q ss_pred CCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC-Ccceec-cCCCCEEEEEEeCCCCEEEEEeCCCe
Q 016187 265 ITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHS-LPRSTC-DHEDGVTCLMWLGTSKYVVTGCVDGK 342 (394)
Q Consensus 265 ~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~dg~ 342 (394)
+.+++++.++.+|...|.++.+.+. ..+++|+.|++|++||+.+. .+.... +|...+..+. ..+++|++++.|++
T Consensus 358 ~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~--~~~~~Lvs~~aD~~ 434 (537)
T KOG0274|consen 358 PRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLL--LRDNFLVSSSADGT 434 (537)
T ss_pred hhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccc--cccceeEecccccc
Confidence 9999999999999999999988876 89999999999999999887 554443 4555554443 46789999999999
Q ss_pred EEEEECCCCeEEEEeec-ccCceeEEEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 343 VRVWDSLSGDCVRTFSG-HRDAIQAISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 343 i~iwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
|++||..++++++.+.+ |...|..+++. .+.+++++.||++++||+.+.
T Consensus 435 Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~ 484 (537)
T KOG0274|consen 435 IKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSG 484 (537)
T ss_pred EEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccC
Confidence 99999999999999998 67889888877 578899999999999999875
No 67
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-33 Score=227.46 Aligned_cols=285 Identities=19% Similarity=0.305 Sum_probs=239.9
Q ss_pred eeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 016187 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS 137 (394)
Q Consensus 58 ~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~ 137 (394)
..+.||..+++-|.++. ++.||.|++.|.++.||-..+|+.+.++.||++.|+|+..+.+.++|+||+.|.++++||+.
T Consensus 4 i~l~GHERplTqiKyN~-eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNR-EGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred cccccCccccceEEecC-CCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence 34679999999999997 57899999999999999998999999999999999999999999999999999999999999
Q ss_pred CCceEEEEecCCCCEEEEEEcCCCCEEEEecC-----CCeEEEEeCC-------ccceeeeecccCcCeEEEEECCCCCe
Q 016187 138 SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-----DSTVWMWNAD-------RAAYLNMFSGHGSSVTCGDFTPDGKT 205 (394)
Q Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~-----d~~i~iw~~~-------~~~~~~~~~~h~~~v~~~~~~~~~~~ 205 (394)
+|+.+.+++. ..+|..+.|++.+++++.+.. .+.|.+++++ ...+...+..+.+.++.+-|.|-+++
T Consensus 83 tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ 161 (327)
T KOG0643|consen 83 TGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGET 161 (327)
T ss_pred CCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCE
Confidence 9999988874 467999999999998877654 3578899987 33445666778889999999999999
Q ss_pred EEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEE
Q 016187 206 ICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIG 285 (394)
Q Consensus 206 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~ 285 (394)
|++|..||.|..||.++|+.+... ...|...|+.+.++++..++++++.|.+-++||..+-++++++. -..|+++.+
T Consensus 162 ii~Ghe~G~is~~da~~g~~~v~s--~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aa 238 (327)
T KOG0643|consen 162 IIAGHEDGSISIYDARTGKELVDS--DEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAA 238 (327)
T ss_pred EEEecCCCcEEEEEcccCceeeec--hhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee-eccccccee
Confidence 999999999999999998754332 23467789999999999999999999999999999999998886 467999999
Q ss_pred ECCCCCeEEEEeCCCcEEEEeCCCC---------------CcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 016187 286 FSRSSPWAATGSMDQKLIIWDLQHS---------------LPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWD 347 (394)
Q Consensus 286 ~~~~~~~l~s~s~dg~i~iwd~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd 347 (394)
++|....++.|+.....-+=-...+ ......+|-.+|++++|+|+|+-.++|+.||.|++.-
T Consensus 239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~ 315 (327)
T KOG0643|consen 239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHH 315 (327)
T ss_pred cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEE
Confidence 9998887776653322222111111 1122346889999999999999999999999999863
No 68
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=3.3e-34 Score=236.75 Aligned_cols=293 Identities=20% Similarity=0.325 Sum_probs=242.6
Q ss_pred CCCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCC------------------CeeeEeecCcccCEEEEE
Q 016187 53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ------------------GDWASEIQGHKDSVSSLA 114 (394)
Q Consensus 53 ~~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~------------------~~~~~~~~~h~~~V~~v~ 114 (394)
+.-.+..++.|+.++.+.+|+| ++.++||||.|..|+|.|++. ...+++|-.|.++|+++.
T Consensus 101 ~~yEt~ylt~HK~~cR~aafs~-DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~ 179 (430)
T KOG0640|consen 101 SEYETKYLTSHKSPCRAAAFSP-DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLD 179 (430)
T ss_pred cccceEEEeecccceeeeeeCC-CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCccccee
Confidence 3345677889999999999999 578999999999999999761 135677888999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCceEEEE--ecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeee---cc
Q 016187 115 FSMDGQLLASGGLDGLVQIWDPSSGNLKCTL--EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF---SG 189 (394)
Q Consensus 115 ~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~---~~ 189 (394)
|+|....|++|+.|++|+++|.........+ -....+|.+++|||.|.+|+.|..-..+++||+++-++.... .+
T Consensus 180 FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~q 259 (430)
T KOG0640|consen 180 FHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQ 259 (430)
T ss_pred ecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccc
Confidence 9999999999999999999998765433222 234568999999999999999999999999999987765432 46
Q ss_pred cCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 016187 190 HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK 269 (394)
Q Consensus 190 h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~ 269 (394)
|...|+++.+++.+++-++++.||.|++||-.+++++.++.... ....|.+..|..+++++++.+.|..+++|.+.+++
T Consensus 260 ht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH-~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R 338 (430)
T KOG0640|consen 260 HTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAH-GGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR 338 (430)
T ss_pred cccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhc-CCceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence 89999999999999999999999999999999999887775421 23468899999999999999999999999999999
Q ss_pred EEEEeccC-----CCCEEEEEECCCCCeEEEEeC-CCcEEEEeCCCCCc--ceeccCCCCEEEEEEeCCCCEEEEEeCCC
Q 016187 270 VVSSLVSH-----TDSIECIGFSRSSPWAATGSM-DQKLIIWDLQHSLP--RSTCDHEDGVTCLMWLGTSKYVVTGCVDG 341 (394)
Q Consensus 270 ~~~~~~~h-----~~~i~~v~~~~~~~~l~s~s~-dg~i~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~sg~~dg 341 (394)
.+..+.+- ..--+...|+....|++.-.. .+.+.-||.++... ....+|++.+.++..+|.+.-+++++.|.
T Consensus 339 ~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~ 418 (430)
T KOG0640|consen 339 MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDF 418 (430)
T ss_pred eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccc
Confidence 99887652 111233457777777665443 46788999887533 34568999999999999999999999999
Q ss_pred eEEEEE
Q 016187 342 KVRVWD 347 (394)
Q Consensus 342 ~i~iwd 347 (394)
++++|-
T Consensus 419 raRFWy 424 (430)
T KOG0640|consen 419 RARFWY 424 (430)
T ss_pred eeeeee
Confidence 999994
No 69
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.9e-34 Score=250.32 Aligned_cols=278 Identities=24% Similarity=0.384 Sum_probs=242.3
Q ss_pred CCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEE
Q 016187 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC 143 (394)
Q Consensus 64 ~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~ 143 (394)
.+.|.+|+|+|..++-+|..+ .-++.+|+..+...+..+.-.++.|+++.|-.||++||.|...|.|+|+|..+...+.
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR 104 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILR 104 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHH
Confidence 358999999998887777654 3688899988877777777788999999999999999999999999999977766677
Q ss_pred EEecCCCCEEEEEEcCCCC-EEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCC-CCeEEEEeCCCcEEEEcCC
Q 016187 144 TLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPD-GKTICTGSDDATLRVWNPK 221 (394)
Q Consensus 144 ~~~~~~~~v~~~~~~~~~~-~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~ 221 (394)
.+..|+.++..+.|+|+++ .+++|+.|+.+++||+.+......+.+|.+.|.|.+|+|- +..++||+.||+||+||++
T Consensus 105 ~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR 184 (487)
T KOG0310|consen 105 QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTR 184 (487)
T ss_pred HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEec
Confidence 8889999999999999765 6788899999999999998876689999999999999994 5689999999999999998
Q ss_pred CC-ceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-cEEEEeccCCCCEEEEEECCCCCeEEEEeCC
Q 016187 222 SG-ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG-KVVSSLVSHTDSIECIGFSRSSPWAATGSMD 299 (394)
Q Consensus 222 ~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~-~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~d 299 (394)
.. ..+..+. |..+|..+.+-|.|..+++++. ..+++||+.+| +.+..+..|...|+|+.+..++..|++++.|
T Consensus 185 ~~~~~v~eln----hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD 259 (487)
T KOG0310|consen 185 SLTSRVVELN----HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLD 259 (487)
T ss_pred cCCceeEEec----CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccc
Confidence 77 4444443 6778999999999999888764 57999999955 5555566699999999999999999999999
Q ss_pred CcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 016187 300 QKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWD 347 (394)
Q Consensus 300 g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd 347 (394)
+.+++||+...+.........+|.+++.+|+++.++.|..+|.+.+=.
T Consensus 260 ~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 260 RHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRR 307 (487)
T ss_pred cceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeeeeh
Confidence 999999988877777788899999999999999999999999988774
No 70
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=2.3e-33 Score=258.78 Aligned_cols=338 Identities=22% Similarity=0.363 Sum_probs=290.3
Q ss_pred CCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCC-EEEEEeCCCcEE
Q 016187 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQ 132 (394)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~-~l~t~s~d~~i~ 132 (394)
.+-..+|.++.+.|+++.-+|. -.++|-|-.+|+|.++++..++.+.+++--.+.|++++|..||+ .||+|+..|.+.
T Consensus 192 ~K~v~~f~~~~s~IT~ieqsPa-LDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~ 270 (910)
T KOG1539|consen 192 GKVVYTFQEFFSRITAIEQSPA-LDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMA 270 (910)
T ss_pred CcEEEEecccccceeEeccCCc-ceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEE
Confidence 3557778899999999999994 56899999999999999999999999985469999999999997 567788889999
Q ss_pred EEeCCCCceEEEEe-cCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcc----ceeeeecccCcCeEEEEEC-CCCCeE
Q 016187 133 IWDPSSGNLKCTLE-GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA----AYLNMFSGHGSSVTCGDFT-PDGKTI 206 (394)
Q Consensus 133 vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~----~~~~~~~~h~~~v~~~~~~-~~~~~l 206 (394)
+||++..+....+. .|.+.+....|.|....+++++.|+.+++|-.+++ ..++.-.||..+..|+.|. .+|..+
T Consensus 271 ~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~i 350 (910)
T KOG1539|consen 271 FWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFI 350 (910)
T ss_pred EEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEE
Confidence 99999888776665 67789999999999999999999999998865532 4556667999999999997 688999
Q ss_pred EEEeCCCcEEEEcCCCC-------c--------e-------------EEEEc----------------------------
Q 016187 207 CTGSDDATLRVWNPKSG-------E--------N-------------IHVIR---------------------------- 230 (394)
Q Consensus 207 ~s~~~dg~i~vwd~~~~-------~--------~-------------~~~~~---------------------------- 230 (394)
.+++.|++++.+++... + . +..+.
T Consensus 351 lsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~ 430 (910)
T KOG1539|consen 351 LSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFR 430 (910)
T ss_pred EecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEecc
Confidence 99999999988875321 0 0 00000
Q ss_pred -----CC---CC----cccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEe---ccCCCCEEEEEECCCCCeEEE
Q 016187 231 -----GH---PY----HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL---VSHTDSIECIGFSRSSPWAAT 295 (394)
Q Consensus 231 -----~~---~~----~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~---~~h~~~i~~v~~~~~~~~l~s 295 (394)
.+ +. ....+++++.++.|++.+.|+..|+|.+|++++|....++ ..|..+|..++....++.+++
T Consensus 431 n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vs 510 (910)
T KOG1539|consen 431 NKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVS 510 (910)
T ss_pred CcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEE
Confidence 00 00 1135788999999999999999999999999999888888 589999999999999999999
Q ss_pred EeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCE
Q 016187 296 GSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDF 375 (394)
Q Consensus 296 ~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 375 (394)
++.+|-+++||..+........-...+.++.++.....++.+..|-.|+++|+.+.+.++.|.||.+.|+++.|||||++
T Consensus 511 a~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrW 590 (910)
T KOG1539|consen 511 AGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRW 590 (910)
T ss_pred ccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcE
Confidence 99999999999988776666666677889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcEEEEeccC
Q 016187 376 LVSVSLDGTARVFEIAD 392 (394)
Q Consensus 376 l~s~s~dg~i~iw~~~~ 392 (394)
|++++.|++||+||+.+
T Consensus 591 lisasmD~tIr~wDlpt 607 (910)
T KOG1539|consen 591 LISASMDSTIRTWDLPT 607 (910)
T ss_pred EEEeecCCcEEEEeccC
Confidence 99999999999999875
No 71
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.9e-33 Score=254.56 Aligned_cols=339 Identities=23% Similarity=0.342 Sum_probs=272.1
Q ss_pred CceeeeeccCCcEEEEEEcCCC--CcEEEEecCCCeEEEEEcCCCe-------------------------ee------E
Q 016187 55 DSTHIFSGHSDEVYSVACSPTD--ATLVATGGGDDKGFFWRINQGD-------------------------WA------S 101 (394)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~p~~--~~~lasg~~d~~v~~w~~~~~~-------------------------~~------~ 101 (394)
.....+.||++.|.+|+|...+ ..+|||+|+|.+||||.+.-+. .. .
T Consensus 182 ~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ea 261 (764)
T KOG1063|consen 182 ARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEA 261 (764)
T ss_pred eEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhh
Confidence 3456678999999999997654 3689999999999999964221 01 1
Q ss_pred eecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC--CceEEEE-----ecCCCCEEEEEEcCCCCEEEEecCCCeEE
Q 016187 102 EIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS--GNLKCTL-----EGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174 (394)
Q Consensus 102 ~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~--~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~s~d~~i~ 174 (394)
.+.||.+.|+++.|+|.+..|+++|.|.++.+|...+ |-.+..+ .+..++.....|+|+++.+++-+..|.++
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence 2359999999999999999999999999999997653 4444333 34456789999999999999999999999
Q ss_pred EEeCCcc---ceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCC-CCceEEEEcCCCCcccCeEEEEEcCCCCE
Q 016187 175 MWNADRA---AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPK-SGENIHVIRGHPYHTEGLTCLTISADSTL 250 (394)
Q Consensus 175 iw~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 250 (394)
+|..... .....+.||...|+.++|.|.|++|++.+.|.+-|++-.- ..+..+.+...+.|...++|+++-+....
T Consensus 342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~ 421 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQ 421 (764)
T ss_pred EEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCce
Confidence 9984332 2344578999999999999999999999999999998765 23345667667788889999999887777
Q ss_pred EEEEeCCCcEEEEECCC-------------------------------------------CcE-----------------
Q 016187 251 ALSGSKDGSVHMVNITT-------------------------------------------GKV----------------- 270 (394)
Q Consensus 251 l~~g~~dg~i~i~d~~~-------------------------------------------~~~----------------- 270 (394)
+++|.....+|+|+... |..
T Consensus 422 FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ 501 (764)
T KOG1063|consen 422 FVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELT 501 (764)
T ss_pred eeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhcc
Confidence 88888888888887421 000
Q ss_pred ----------------EEEeccCCCCEEEEEECCCCCeEEEEeCCC-----cEEEEeCCCCCcce-eccCCCCEEEEEEe
Q 016187 271 ----------------VSSLVSHTDSIECIGFSRSSPWAATGSMDQ-----KLIIWDLQHSLPRS-TCDHEDGVTCLMWL 328 (394)
Q Consensus 271 ----------------~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg-----~i~iwd~~~~~~~~-~~~~~~~v~~~~~~ 328 (394)
++++.+|...|.+++.+|++.++||++... .|++|+..+..... ...|.-.|+.++|+
T Consensus 502 ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FS 581 (764)
T KOG1063|consen 502 EPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFS 581 (764)
T ss_pred CCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEEC
Confidence 011224667899999999999999998764 48999988764443 66899999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeE----EEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 329 GTSKYVVTGCVDGKVRVWDSLSGDC----VRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 329 ~~~~~l~sg~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
|+++||++.|.|.++.+|....... ....+.|+.-|++..|+|++.+++|+|.|.+|++|...+.
T Consensus 582 pdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 582 PDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred CCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 9999999999999999998643322 2236789999999999999999999999999999998764
No 72
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=7.9e-32 Score=213.50 Aligned_cols=285 Identities=20% Similarity=0.366 Sum_probs=232.9
Q ss_pred ccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCC------C-----ee----eEeecCcccCEEEEEEcCCCCEEEEEe
Q 016187 62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ------G-----DW----ASEIQGHKDSVSSLAFSMDGQLLASGG 126 (394)
Q Consensus 62 ~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~------~-----~~----~~~~~~h~~~V~~v~~s~~g~~l~t~s 126 (394)
..+..|.+++|+|.+ .+-|.|+..++.++--+.. + .. ...-+.|++.|+|.+|||+|++|+||+
T Consensus 30 ~dsqairav~fhp~g-~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgs 108 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAG-GLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGS 108 (350)
T ss_pred cchhheeeEEecCCC-ceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecC
Confidence 456789999999964 5778899999999865421 1 01 112356899999999999999999999
Q ss_pred CCCcEEEEeCCCC--ce---EEEEecCCCCEEEEEEcCC----CCEEEEec-CCCeEEEEeCCccceeeeecccCcCeEE
Q 016187 127 LDGLVQIWDPSSG--NL---KCTLEGPGGGVEWVSWHPR----GHIVLAGS-EDSTVWMWNADRAAYLNMFSGHGSSVTC 196 (394)
Q Consensus 127 ~d~~i~vwd~~~~--~~---~~~~~~~~~~v~~~~~~~~----~~~l~~~s-~d~~i~iw~~~~~~~~~~~~~h~~~v~~ 196 (394)
.|.+|++.-++.. +. ...+..|.+.|..++|-.+ +.+|++++ .|-.|++=|-.+++..+.+.||.+-|.+
T Consensus 109 ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghila 188 (350)
T KOG0641|consen 109 NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILA 188 (350)
T ss_pred CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEE
Confidence 9999999755432 11 2346678899999999754 34666655 4677888888899999999999998876
Q ss_pred EEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCC----CCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE
Q 016187 197 GDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH----PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVS 272 (394)
Q Consensus 197 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~ 272 (394)
+ ++-+|-++++|++|.+||+||++.+.++..+... ......+..+++.|.|+++++|..|.+..+||++.++.++
T Consensus 189 l-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq 267 (350)
T KOG0641|consen 189 L-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQ 267 (350)
T ss_pred E-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceee
Confidence 5 4557889999999999999999998888776431 1223468899999999999999999999999999999999
Q ss_pred EeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcc-----eeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 016187 273 SLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPR-----STCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWD 347 (394)
Q Consensus 273 ~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd 347 (394)
.+..|+..|.|+.|+|..-|+++++.|.+|++=|++..... ....|.+.+..+.|+|..--+++.+.|.++.+|-
T Consensus 268 ~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa 347 (350)
T KOG0641|consen 268 RFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWA 347 (350)
T ss_pred eeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEec
Confidence 99999999999999999999999999999999998754222 2346888888999999998899999999999996
Q ss_pred C
Q 016187 348 S 348 (394)
Q Consensus 348 ~ 348 (394)
+
T Consensus 348 ~ 348 (350)
T KOG0641|consen 348 L 348 (350)
T ss_pred c
Confidence 4
No 73
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=2.7e-33 Score=265.86 Aligned_cols=287 Identities=27% Similarity=0.408 Sum_probs=240.8
Q ss_pred cCCcEEEEEEcCCCCcEEEEec--CCCeEEEEEcCC------------CeeeEeecCcccCEEEEEEcCCCCEEEEEeCC
Q 016187 63 HSDEVYSVACSPTDATLVATGG--GDDKGFFWRINQ------------GDWASEIQGHKDSVSSLAFSMDGQLLASGGLD 128 (394)
Q Consensus 63 h~~~v~~~~~~p~~~~~lasg~--~d~~v~~w~~~~------------~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d 128 (394)
+...|++|..||+ +..+|||| .|+.+++|+... .+.+.++..|.+.|.|+.|+|||++||+||.|
T Consensus 12 ~~~~IfSIdv~pd-g~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 12 NEKSIFSIDVHPD-GVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred CCeeEEEEEecCC-ceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 3457899999995 67899999 899999999532 23455677899999999999999999999999
Q ss_pred CcEEEEeCCC----------C--------ceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeeccc
Q 016187 129 GLVQIWDPSS----------G--------NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH 190 (394)
Q Consensus 129 ~~i~vwd~~~----------~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h 190 (394)
+.|.||.... | +....+.+|...|..++|+|++.+|++++.|++|.+|+..+.+.++.+.+|
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H 170 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGH 170 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecc
Confidence 9999998662 1 245678899999999999999999999999999999999999999999999
Q ss_pred CcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCC---cccCeEEEEEcCCCCEEEEEe----CCCcEEEE
Q 016187 191 GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPY---HTEGLTCLTISADSTLALSGS----KDGSVHMV 263 (394)
Q Consensus 191 ~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~g~----~dg~i~i~ 263 (394)
.+.|..+.|.|-|++||+-+.|++|+||++.+-...+.+..+-. ......-+.|+|||.+|++.. .-.++.|.
T Consensus 171 ~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Ii 250 (942)
T KOG0973|consen 171 QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAII 250 (942)
T ss_pred cccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEE
Confidence 99999999999999999999999999999877555555544321 233467789999999998853 34578899
Q ss_pred ECCCCcEEEEeccCCCCEEEEEECCC-----CC------------eEEEEeCCCcEEEEeCCCCCcceec--cCCCCEEE
Q 016187 264 NITTGKVVSSLVSHTDSIECIGFSRS-----SP------------WAATGSMDQKLIIWDLQHSLPRSTC--DHEDGVTC 324 (394)
Q Consensus 264 d~~~~~~~~~~~~h~~~i~~v~~~~~-----~~------------~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~v~~ 324 (394)
+-.+.+.-..+.+|..+++++.|+|. .. .+|+|+.|++|.||......+.... -....|..
T Consensus 251 eR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~D 330 (942)
T KOG0973|consen 251 ERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVD 330 (942)
T ss_pred ecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceee
Confidence 88777878889999999999999983 11 5899999999999998654443322 23567999
Q ss_pred EEEeCCCCEEEEEeCCCeEEEEECCC
Q 016187 325 LMWLGTSKYVVTGCVDGKVRVWDSLS 350 (394)
Q Consensus 325 ~~~~~~~~~l~sg~~dg~i~iwd~~~ 350 (394)
+.|+|+|..|+++|.||+|.++....
T Consensus 331 msWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 331 MSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred eeEcCCCCeEEEEecCCeEEEEEcch
Confidence 99999999999999999999997653
No 74
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=5.8e-33 Score=224.22 Aligned_cols=277 Identities=20% Similarity=0.311 Sum_probs=242.4
Q ss_pred eeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeE--eecCcccCEEEEEEcCCC-CEEEEEeCCCcEEEE
Q 016187 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWAS--EIQGHKDSVSSLAFSMDG-QLLASGGLDGLVQIW 134 (394)
Q Consensus 58 ~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~--~~~~h~~~V~~v~~s~~g-~~l~t~s~d~~i~vw 134 (394)
..+.+|...|.+|+|.- ++..||+|+.|+++.+|+++..++.. ..++|.+.|-.++|+|.. .+|++++.|.+|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~-~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNC-DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcc-cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 55778999999999997 57789999999999999998776554 457899999999999854 689999999999999
Q ss_pred eCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCc
Q 016187 135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT 214 (394)
Q Consensus 135 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 214 (394)
|...++....+....+.+. +.|+|++.+++.+..|..|...|.++-+.....+ ....+.-+.|+.++.+++....-|+
T Consensus 93 d~r~~k~~~~i~~~~eni~-i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGENIN-ITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred EeccCcEEEEeeccCcceE-EEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCce
Confidence 9999999888776666554 7999999999999999999999998776655433 3445667788888888888788899
Q ss_pred EEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEE
Q 016187 215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAA 294 (394)
Q Consensus 215 i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~ 294 (394)
|.|-....-+.+..++.| .....|+.|+|+|+++++|+.|..+.+||+...-+++.+..+.-+|..+.|+.++++||
T Consensus 171 v~ILsypsLkpv~si~AH---~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lA 247 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIKAH---PSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLA 247 (313)
T ss_pred EEEEeccccccccccccC---CcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceee
Confidence 999988877777777764 56789999999999999999999999999999888899999999999999999999999
Q ss_pred EEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCC
Q 016187 295 TGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVD 340 (394)
Q Consensus 295 s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d 340 (394)
++|.|..|-|-++.++.......++.+...++|+|...+||-++.|
T Consensus 248 SaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 248 SASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecC
Confidence 9999999999999988888888889999999999999999988765
No 75
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.2e-33 Score=243.11 Aligned_cols=276 Identities=24% Similarity=0.372 Sum_probs=233.8
Q ss_pred cccCEEEEEEcCCCCE-EEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcccee
Q 016187 106 HKDSVSSLAFSMDGQL-LASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL 184 (394)
Q Consensus 106 h~~~V~~v~~s~~g~~-l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~ 184 (394)
...+|.+++|||...+ +|+.+ .-.+.+|+..+.....++......+.++.|-.+|.+|++|...|.++++|..+...+
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL 103 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL 103 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence 4468999999997654 44333 457999998887777767767788999999999999999999999999997777778
Q ss_pred eeecccCcCeEEEEECCC-CCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCC-CCEEEEEeCCCcEEE
Q 016187 185 NMFSGHGSSVTCGDFTPD-GKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD-STLALSGSKDGSVHM 262 (394)
Q Consensus 185 ~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~g~~dg~i~i 262 (394)
+.+.+|..++..+.|+|. +..|++|+.|+.+++||+.+......+.+ |++.|+|.+++|. +.++++|+.||+|++
T Consensus 104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~---htDYVR~g~~~~~~~hivvtGsYDg~vrl 180 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSG---HTDYVRCGDISPANDHIVVTGSYDGKVRL 180 (487)
T ss_pred HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecC---CcceeEeeccccCCCeEEEecCCCceEEE
Confidence 899999999999999995 56778899999999999988775334443 7889999999996 458999999999999
Q ss_pred EECCCC-cEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC-Ccc-eeccCCCCEEEEEEeCCCCEEEEEeC
Q 016187 263 VNITTG-KVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHS-LPR-STCDHEDGVTCLMWLGTSKYVVTGCV 339 (394)
Q Consensus 263 ~d~~~~-~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~-~~~~~~~~v~~~~~~~~~~~l~sg~~ 339 (394)
||+++. ..+.++ .|..+|..+.+-|.+..+|+++ ...+++||+.++ +.. ....|...|+|+.+..++..|++|+-
T Consensus 181 ~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sL 258 (487)
T KOG0310|consen 181 WDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSL 258 (487)
T ss_pred EEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeeccc
Confidence 999987 444454 5999999999999999999887 567999999743 222 23449999999999999999999999
Q ss_pred CCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEE
Q 016187 340 DGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVF 388 (394)
Q Consensus 340 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw 388 (394)
|+.|++||+.+.+.+..++- .++|.+++.+|+++.++.|..+|.+.+=
T Consensus 259 D~~VKVfd~t~~Kvv~s~~~-~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 259 DRHVKVFDTTNYKVVHSWKY-PGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred ccceEEEEccceEEEEeeec-ccceeeEEecCCCceEEEecccceeeee
Confidence 99999999988998888874 7799999999999999999999987653
No 76
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-33 Score=261.83 Aligned_cols=285 Identities=25% Similarity=0.372 Sum_probs=215.8
Q ss_pred Eeec-CcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecC----------CCCEEEEEEcC---CCC--EE
Q 016187 101 SEIQ-GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGP----------GGGVEWVSWHP---RGH--IV 164 (394)
Q Consensus 101 ~~~~-~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~----------~~~v~~~~~~~---~~~--~l 164 (394)
+.+. +|.+.|.++.||+||+|||+||.|+.|+||.+...+....-.+. .+.+..+.-.+ .++ ..
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 3456 89999999999999999999999999999987653321100000 00010011111 001 11
Q ss_pred EEecCCCeEEEEeCC----ccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeE
Q 016187 165 LAGSEDSTVWMWNAD----RAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLT 240 (394)
Q Consensus 165 ~~~s~d~~i~iw~~~----~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~ 240 (394)
-.+..... .+.+.. ..++++.+.||.+.|..+.|+.+ ++|++++.|++||||++...++++++. |.+.||
T Consensus 340 ~~~~~s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~----HndfVT 413 (712)
T KOG0283|consen 340 RKGSQSPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS----HNDFVT 413 (712)
T ss_pred ccccCCcc-ccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe----cCCeeE
Confidence 11222222 122211 23567889999999999999965 589999999999999999999999987 788899
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCccee----
Q 016187 241 CLTISA-DSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRST---- 315 (394)
Q Consensus 241 ~~~~~~-~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~---- 315 (394)
|++|+| |.+++++|+-||+++||++...+++.-... .+-|++++|.|+|++.+.|+.+|.+++|++........
T Consensus 414 cVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~ 492 (712)
T KOG0283|consen 414 CVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR 492 (712)
T ss_pred EEEecccCCCcEeecccccceEEeecCcCeeEeehhh-hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEe
Confidence 999999 789999999999999999988876654443 38899999999999999999999999999875432221
Q ss_pred ------ccCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCeEEEEeecccCc--eeEEEEccCCCEEEEEeCCCcEE
Q 016187 316 ------CDHEDGVTCLMWLGTS-KYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDA--IQAISVSAHQDFLVSVSLDGTAR 386 (394)
Q Consensus 316 ------~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~--v~~l~~~~~~~~l~s~s~dg~i~ 386 (394)
..|. .|+.+.|.|.. ..|++.+.|.+|+|+|.++.+++..|+|+... =....|+.||++|+++++|..|+
T Consensus 493 ~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VY 571 (712)
T KOG0283|consen 493 LHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVY 571 (712)
T ss_pred eccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEE
Confidence 1233 79999998754 35777789999999999999999999976533 24667999999999999999999
Q ss_pred EEeccCC
Q 016187 387 VFEIADF 393 (394)
Q Consensus 387 iw~~~~~ 393 (394)
+|+.+.+
T Consensus 572 iW~~~~~ 578 (712)
T KOG0283|consen 572 IWKNDSF 578 (712)
T ss_pred EEeCCCC
Confidence 9998654
No 77
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.2e-34 Score=252.36 Aligned_cols=249 Identities=24% Similarity=0.423 Sum_probs=219.0
Q ss_pred ceEEEEecCCCCEEEEEEcC-CCCEEEEecCCCeEEEEeCCc-cceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEE
Q 016187 140 NLKCTLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADR-AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 217 (394)
Q Consensus 140 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~d~~i~iw~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~v 217 (394)
+..+++.+|...|+++.|.| .+++|++++.|+.|+||++.. +.+++++.+|..+|..+.|+++|..++|++.|+.|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 45677889999999999999 789999999999999999876 8899999999999999999999999999999999999
Q ss_pred EcCCCCceEEEEcCCCCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEE
Q 016187 218 WNPKSGENIHVIRGHPYHTEGLTCLTISADS-TLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATG 296 (394)
Q Consensus 218 wd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~ 296 (394)
||+++|+++..+.. ...++|+.+.|++ +.+++|+.|+.|+.||++++++++.+..|-++|..+.|-+++..+++.
T Consensus 285 wDtETG~~~~~f~~----~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 285 WDTETGQVLSRFHL----DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred eccccceEEEEEec----CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence 99999999888763 3468899999998 899999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEeCCCCCcceecc--CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCe---EEEEeeccc--CceeEEEE
Q 016187 297 SMDQKLIIWDLQHSLPRSTCD--HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGD---CVRTFSGHR--DAIQAISV 369 (394)
Q Consensus 297 s~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~---~~~~~~~h~--~~v~~l~~ 369 (394)
+.|++++||+.+...+..... ......|+..+|+++++++-+.|..|.++.+...- ..+.|+||. +--..+.|
T Consensus 361 SDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f 440 (503)
T KOG0282|consen 361 SDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF 440 (503)
T ss_pred ccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence 999999999987664443322 22345688899999999999999999999865432 234688885 33457899
Q ss_pred ccCCCEEEEEeCCCcEEEEeccC
Q 016187 370 SAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 370 ~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
||||.+|+||..||.+.+||..+
T Consensus 441 SpDG~~l~SGdsdG~v~~wdwkt 463 (503)
T KOG0282|consen 441 SPDGRTLCSGDSDGKVNFWDWKT 463 (503)
T ss_pred cCCCCeEEeecCCccEEEeechh
Confidence 99999999999999999999764
No 78
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.9e-34 Score=254.66 Aligned_cols=319 Identities=20% Similarity=0.393 Sum_probs=260.1
Q ss_pred EEEEcCCCCcEEEEecCCCeEEEEEcCCCe------eeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--c
Q 016187 69 SVACSPTDATLVATGGGDDKGFFWRINQGD------WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG--N 140 (394)
Q Consensus 69 ~~~~~p~~~~~lasg~~d~~v~~w~~~~~~------~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~--~ 140 (394)
++..++.++++|.|||.|+.+++|++.... .+..++.|.+.|..+....+|+.|+++|.|.+|++|+...+ -
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 555666677789999999999999975432 36678999999999999999999999999999999998877 3
Q ss_pred eEEEEecCCCCEEEEEE-cCCCCEEEEecCCCeEEEEeCCccce----------eeeec-ccCcCeEEEEECCCCCeEEE
Q 016187 141 LKCTLEGPGGGVEWVSW-HPRGHIVLAGSEDSTVWMWNADRAAY----------LNMFS-GHGSSVTCGDFTPDGKTICT 208 (394)
Q Consensus 141 ~~~~~~~~~~~v~~~~~-~~~~~~l~~~s~d~~i~iw~~~~~~~----------~~~~~-~h~~~v~~~~~~~~~~~l~s 208 (394)
.+.++..|.+.|.++++ .++..++++|+-|+.|.+||++++.. ...+. |+..+|.+++-++.|..+++
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivs 188 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVS 188 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEe
Confidence 56678889999999999 77788999999999999999986622 12223 88899999999999999999
Q ss_pred EeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECC
Q 016187 209 GSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSR 288 (394)
Q Consensus 209 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~ 288 (394)
|+..+.+++||.++++.+..+++ |...|.++.+++||+.+++++.||+|++||+...+++.++..|.+.|.++..+|
T Consensus 189 Ggtek~lr~wDprt~~kimkLrG---HTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~ 265 (735)
T KOG0308|consen 189 GGTEKDLRLWDPRTCKKIMKLRG---HTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP 265 (735)
T ss_pred cCcccceEEeccccccceeeeec---cccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC
Confidence 99999999999999999888886 678899999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCCcEEEEeCCCC-CcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC-------CeEEEE----
Q 016187 289 SSPWAATGSMDQKLIIWDLQHS-LPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLS-------GDCVRT---- 356 (394)
Q Consensus 289 ~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~-------~~~~~~---- 356 (394)
+-..+.+|+.||.|..=|++.. .....|....+|..+......+-+-+++.|+.|+-|...- +.+...
T Consensus 266 sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~ 345 (735)
T KOG0308|consen 266 SFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDS 345 (735)
T ss_pred CcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCccccccccCCCCCcccccC
Confidence 9999999999999999998874 3334455556666666654444445677899999995431 111110
Q ss_pred --------------eecccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 357 --------------FSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 357 --------------~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
++| ..+|..-+.-.|.+.++|=...|.+.+||+-
T Consensus 346 ~~~~~~~~~tp~~vi~G-g~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl 393 (735)
T KOG0308|consen 346 NNHSCDLTNTPDSVIPG-GAAIKKHAMLNDKRHVLTKDAKGNVALWDIL 393 (735)
T ss_pred CCccccccCCCceeccC-chhhhhhhhhcCcceEeeecCCCCEEEEEee
Confidence 111 1123333334577899999999999999963
No 79
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-33 Score=232.88 Aligned_cols=289 Identities=25% Similarity=0.436 Sum_probs=244.7
Q ss_pred eeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEe--
Q 016187 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD-- 135 (394)
Q Consensus 58 ~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd-- 135 (394)
..|.||.+.|+.++.... ..++.|++.|.+.+||.++++.++.++.||.+.|++++|++.+.+++|+|.|++..||.
T Consensus 142 re~~GHkDGiW~Vaa~~t-qpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~a 220 (481)
T KOG0300|consen 142 RELEGHKDGIWHVAADST-QPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAA 220 (481)
T ss_pred hhhcccccceeeehhhcC-CcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHh
Confidence 346799999999998764 44899999999999999999999999999999999999999999999999999999996
Q ss_pred ----CCC--------C--------------------------ceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEe
Q 016187 136 ----PSS--------G--------------------------NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177 (394)
Q Consensus 136 ----~~~--------~--------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~ 177 (394)
+.. + -.++.+.+|.+.|.+..|...++.+++++.|.+..+||
T Consensus 221 v~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwD 300 (481)
T KOG0300|consen 221 VNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWD 300 (481)
T ss_pred hcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeee
Confidence 110 0 02345678889999999999999999999999999999
Q ss_pred CCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCC
Q 016187 178 ADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD 257 (394)
Q Consensus 178 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~d 257 (394)
++++..+..+.||....+.+.-+|..+++++.+.|.+.|+||++. .++.+...+.|.+.++++.|.-+. .+++|+.|
T Consensus 301 VEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe--aI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDD 377 (481)
T KOG0300|consen 301 VETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE--AIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDD 377 (481)
T ss_pred eccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchh--hcceeeeecccccceeEEEEecCC-ceeecCCC
Confidence 999999999999999999999999999999999999999999983 333333334578889999998765 56899999
Q ss_pred CcEEEEECCCCc-EEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC----cc-eeccCCCCEEEEEEeCCC
Q 016187 258 GSVHMVNITTGK-VVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSL----PR-STCDHEDGVTCLMWLGTS 331 (394)
Q Consensus 258 g~i~i~d~~~~~-~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~----~~-~~~~~~~~v~~~~~~~~~ 331 (394)
.+|++||+++.+ ++.++. -..+++.++++..++++|.--....|+|||+.... ++ ...+|...|+|++|..+.
T Consensus 378 rTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eeh 456 (481)
T KOG0300|consen 378 RTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEH 456 (481)
T ss_pred ceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccC
Confidence 999999999875 455554 46789999999999999998888999999997542 22 234688889999998553
Q ss_pred --CEEEEEeCCCeEEEEECCCC
Q 016187 332 --KYVVTGCVDGKVRVWDSLSG 351 (394)
Q Consensus 332 --~~l~sg~~dg~i~iwd~~~~ 351 (394)
.-|++++.|..+.-|++.+.
T Consensus 457 p~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 457 PACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cccccccccccceeeeeEeccc
Confidence 46889999999999987654
No 80
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-32 Score=249.36 Aligned_cols=275 Identities=21% Similarity=0.340 Sum_probs=239.7
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecc-c
Q 016187 112 SLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG-H 190 (394)
Q Consensus 112 ~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~-h 190 (394)
-+.|+ ..+.||+|. ...|.+|+..+++.......+...|+++.|+++|.+|++|..+|.+.|||..+.+.++.+.+ |
T Consensus 182 lldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h 259 (484)
T KOG0305|consen 182 LLDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSH 259 (484)
T ss_pred Hhhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCc
Confidence 35677 345677665 45799999999987665555578999999999999999999999999999999988999888 9
Q ss_pred CcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE
Q 016187 191 GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV 270 (394)
Q Consensus 191 ~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~ 270 (394)
...|.+++|. +..+.+|+.|+.|..+|++..+..... ...|...|..+.|++++.++++|+.|+.+.|||.....+
T Consensus 260 ~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~--~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p 335 (484)
T KOG0305|consen 260 ASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVST--LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP 335 (484)
T ss_pred CceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhh--hhcccceeeeeEECCCCCeeccCCCccceEeccCCCccc
Confidence 9999999998 678999999999999999987765441 234677899999999999999999999999999988888
Q ss_pred EEEeccCCCCEEEEEECCC-CCeEEEE--eCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEE--eCCCeEEE
Q 016187 271 VSSLVSHTDSIECIGFSRS-SPWAATG--SMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTG--CVDGKVRV 345 (394)
Q Consensus 271 ~~~~~~h~~~i~~v~~~~~-~~~l~s~--s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg--~~dg~i~i 345 (394)
+..+..|...|.+++|+|- ..+||+| +.|+.|++||..+........-...|..+.|++..+.|+++ -.+..|.|
T Consensus 336 ~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~l 415 (484)
T KOG0305|consen 336 KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITL 415 (484)
T ss_pred cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEE
Confidence 9999999999999999995 4578876 56999999999877666666667789999999998777764 45778999
Q ss_pred EECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 346 WDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 346 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
|+..+.+.+..+.||...|..++++||+..+++|+.|.++++|++-+
T Consensus 416 w~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 416 WKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred EeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 99999999999999999999999999999999999999999998743
No 81
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=2.7e-31 Score=248.55 Aligned_cols=264 Identities=19% Similarity=0.316 Sum_probs=211.8
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceE-------------EEEecCCCCEEEEEEcC-CCCEEEEecCCC
Q 016187 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK-------------CTLEGPGGGVEWVSWHP-RGHIVLAGSEDS 171 (394)
Q Consensus 106 h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~-------------~~~~~~~~~v~~~~~~~-~~~~l~~~s~d~ 171 (394)
|-..|+....++++..+++++.+.....|+...+..+ ..+.+|.+.|.+++|+| ++++|++|+.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 4455666777778777778887777778876544322 13668999999999999 788999999999
Q ss_pred eEEEEeCCcc-------ceeeeecccCcCeEEEEECCCC-CeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEE
Q 016187 172 TVWMWNADRA-------AYLNMFSGHGSSVTCGDFTPDG-KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLT 243 (394)
Q Consensus 172 ~i~iw~~~~~-------~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~ 243 (394)
+|++|++... ..+..+.+|...|.+++|+|++ ++|++|+.|++|+|||+.+++.+..+.. |...|.+++
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~---h~~~V~sla 175 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKC---HSDQITSLE 175 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcC---CCCceEEEE
Confidence 9999998754 2456788999999999999975 6899999999999999999887777764 566799999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCC-EEEEEECCCCCeEEEEe----CCCcEEEEeCCCCC-cceec-
Q 016187 244 ISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDS-IECIGFSRSSPWAATGS----MDQKLIIWDLQHSL-PRSTC- 316 (394)
Q Consensus 244 ~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~-i~~v~~~~~~~~l~s~s----~dg~i~iwd~~~~~-~~~~~- 316 (394)
|+|++.++++++.|++|++||+++++.+.++..|... +..+.|.+++..+++++ .|+.|++||++... +....
T Consensus 176 ~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~ 255 (493)
T PTZ00421 176 WNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVD 255 (493)
T ss_pred EECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEec
Confidence 9999999999999999999999999999999888765 44677888877777654 47899999997643 22221
Q ss_pred -cCCCCEEEEEEeCCCCEEEEEe-CCCeEEEEECCCCeEEEEeec-ccCceeEEEEccC
Q 016187 317 -DHEDGVTCLMWLGTSKYVVTGC-VDGKVRVWDSLSGDCVRTFSG-HRDAIQAISVSAH 372 (394)
Q Consensus 317 -~~~~~v~~~~~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~~~ 372 (394)
.....+....|++++++|++|+ .||.|++||+.+++++..+.. +..++..++|.|.
T Consensus 256 ~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 256 LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 2334566677899999999887 499999999999988776543 4567888989884
No 82
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=2.8e-32 Score=234.58 Aligned_cols=280 Identities=19% Similarity=0.356 Sum_probs=241.8
Q ss_pred CcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEE
Q 016187 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT 144 (394)
Q Consensus 65 ~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~ 144 (394)
..+.++...|. ...+.|||.|.++.++|...++.+..++||...|+.+.|+|+...+++++.|..|+||..........
T Consensus 220 pgi~ald~~~s-~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~ 298 (506)
T KOG0289|consen 220 PGITALDIIPS-SSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS 298 (506)
T ss_pred CCeeEEeecCC-CCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccc
Confidence 56788888876 56789999999999999999999999999999999999999999999999999999999887776667
Q ss_pred EecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeeccc--CcCeEEEEECCCCCeEEEEeCCCcEEEEcCCC
Q 016187 145 LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH--GSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222 (394)
Q Consensus 145 ~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 222 (394)
...|.++|+.+..+|.|.||++++.|+.....|.+++..+...... .-.+++++|+|||..|.+|..||.|++||++.
T Consensus 299 ~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks 378 (506)
T KOG0289|consen 299 SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS 378 (506)
T ss_pred cccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC
Confidence 7889999999999999999999999999999999998877655432 34589999999999999999999999999998
Q ss_pred CceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCC-CCEEEEEECCCCCeEEEEeCCCc
Q 016187 223 GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHT-DSIECIGFSRSSPWAATGSMDQK 301 (394)
Q Consensus 223 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~-~~i~~v~~~~~~~~l~s~s~dg~ 301 (394)
+..+..+.+ |..+|..++|+.+|.++++++.|+.|++||++..+.+.++.... ..+.++.|.+.|.+|+.++.|=+
T Consensus 379 ~~~~a~Fpg---ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~ 455 (506)
T KOG0289|consen 379 QTNVAKFPG---HTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQ 455 (506)
T ss_pred ccccccCCC---CCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeE
Confidence 887666654 78899999999999999999999999999999988777775433 36999999999999999988767
Q ss_pred EEEEeCCCC---CcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 016187 302 LIIWDLQHS---LPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDS 348 (394)
Q Consensus 302 i~iwd~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~ 348 (394)
|.+++-.+. .......|.+..+++.|....+++++++.|..++++.+
T Consensus 456 Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 456 VYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 766663322 22223456667889999999999999999999888753
No 83
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=4.7e-31 Score=246.90 Aligned_cols=264 Identities=16% Similarity=0.214 Sum_probs=204.9
Q ss_pred CCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeee-------------EeecCcccCEEEEEEcC-CCCEEEEEeCCC
Q 016187 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA-------------SEIQGHKDSVSSLAFSM-DGQLLASGGLDG 129 (394)
Q Consensus 64 ~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~-------------~~~~~h~~~V~~v~~s~-~g~~l~t~s~d~ 129 (394)
-..|.....++++.. +++++.+..+..|+...+..+ ..+.||.+.|++++|+| ++++|++|+.|+
T Consensus 20 ~~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 20 FLNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred eeccccccccCCCCC-cEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 345555566664343 456777888888875433221 24789999999999999 889999999999
Q ss_pred cEEEEeCCCCc-------eEEEEecCCCCEEEEEEcCCC-CEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECC
Q 016187 130 LVQIWDPSSGN-------LKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP 201 (394)
Q Consensus 130 ~i~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~ 201 (394)
+|++||+.++. .+..+.+|...|.+++|+|.+ ++|++++.|++|++||+.+++.+..+.+|...|.+++|+|
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp 178 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL 178 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC
Confidence 99999987652 456788999999999999985 6999999999999999999988888999999999999999
Q ss_pred CCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEe----CCCcEEEEECCCCc-EEEEecc
Q 016187 202 DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS----KDGSVHMVNITTGK-VVSSLVS 276 (394)
Q Consensus 202 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~----~dg~i~i~d~~~~~-~~~~~~~ 276 (394)
+|.+|++++.|++|++||+++++.+..+.+|.. .....+.|.+++..+++++ .|+.|++||+++.. ++.....
T Consensus 179 dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~--~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~ 256 (493)
T PTZ00421 179 DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHAS--AKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDL 256 (493)
T ss_pred CCCEEEEecCCCEEEEEECCCCcEEEEEecCCC--CcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEecc
Confidence 999999999999999999999988877765421 1234567788877777654 47899999998754 4443333
Q ss_pred C-CCCEEEEEECCCCCeEEEEe-CCCcEEEEeCCCCCccee--ccCCCCEEEEEEeCC
Q 016187 277 H-TDSIECIGFSRSSPWAATGS-MDQKLIIWDLQHSLPRST--CDHEDGVTCLMWLGT 330 (394)
Q Consensus 277 h-~~~i~~v~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~--~~~~~~v~~~~~~~~ 330 (394)
+ ...+....|++++.+|++++ .|+.|++||+........ ..+..++..++|.|.
T Consensus 257 d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 257 DQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred CCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 3 34566677999999998887 599999999987644332 233445667777764
No 84
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-32 Score=221.25 Aligned_cols=279 Identities=24% Similarity=0.363 Sum_probs=226.6
Q ss_pred EEEEEEcCCCCcE--EEEe-----cCCCeEEEEEcCCCeeeEeec--CcccCEEEEEEcCCC-CEEEEEeCCCcEEEEeC
Q 016187 67 VYSVACSPTDATL--VATG-----GGDDKGFFWRINQGDWASEIQ--GHKDSVSSLAFSMDG-QLLASGGLDGLVQIWDP 136 (394)
Q Consensus 67 v~~~~~~p~~~~~--lasg-----~~d~~v~~w~~~~~~~~~~~~--~h~~~V~~v~~s~~g-~~l~t~s~d~~i~vwd~ 136 (394)
-+++.|+|--... +|++ .+.|+++|-++...+-+..+. .-.+.+..++|++.. +.+++++.||++++||+
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 4788999953333 3443 257888998886444343332 246889999999875 57889999999999996
Q ss_pred CC-CceEEEEecCCCCEEEEEEcCCC-CEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECC-CCCeEEEEeCCC
Q 016187 137 SS-GNLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDA 213 (394)
Q Consensus 137 ~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg 213 (394)
.. ...+..++.|...|.++.|++.. ..++++|-|++|++|+......++++.||...|...+|+| ..+.+++++.|+
T Consensus 91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~ 170 (311)
T KOG0277|consen 91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDG 170 (311)
T ss_pred CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCc
Confidence 43 34677788999999999999864 4678889999999999999999999999999999999999 678999999999
Q ss_pred cEEEEcCCCCceEEEEcCCCCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCc-EEEEeccCCCCEEEEEECCCC-
Q 016187 214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTGK-VVSSLVSHTDSIECIGFSRSS- 290 (394)
Q Consensus 214 ~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~g~~dg~i~i~d~~~~~-~~~~~~~h~~~i~~v~~~~~~- 290 (394)
++++||++.......+.. |...+.|+.|+. +..++++|+.|+.|+.||+++.+ ++..+.+|.-.|..+.|||..
T Consensus 171 ~l~lwdvr~~gk~~~i~a---h~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~ 247 (311)
T KOG0277|consen 171 TLRLWDVRSPGKFMSIEA---HNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHA 247 (311)
T ss_pred eEEEEEecCCCceeEEEe---ccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchh
Confidence 999999986544444544 556799999987 56788999999999999998764 678889999999999999974
Q ss_pred CeEEEEeCCCcEEEEeCCCC--CcceeccCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEEC
Q 016187 291 PWAATGSMDQKLIIWDLQHS--LPRSTCDHEDGVTCLMWLG-TSKYVVTGCVDGKVRVWDS 348 (394)
Q Consensus 291 ~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~iwd~ 348 (394)
..||+++.|-+++|||.... .......|.+-+..+.|++ +..++|+.+.|+.++||+.
T Consensus 248 ~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 248 SLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 58999999999999998643 2333345777788899986 4678999999999999973
No 85
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-32 Score=221.00 Aligned_cols=277 Identities=20% Similarity=0.292 Sum_probs=225.3
Q ss_pred EEEEEcCC-CCEEEEEe-------CCCcEEEEeCCCCceEEEE--ecCCCCEEEEEEcCC-CCEEEEecCCCeEEEEeCC
Q 016187 111 SSLAFSMD-GQLLASGG-------LDGLVQIWDPSSGNLKCTL--EGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNAD 179 (394)
Q Consensus 111 ~~v~~s~~-g~~l~t~s-------~d~~i~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~-~~~l~~~s~d~~i~iw~~~ 179 (394)
+++.|||- .++||.+. ..|++.|.++..++-+..+ -.-.+.+..++|++. .+.+++++.||++++||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 67899983 23443332 4688999998644333222 234567899999996 4688999999999999964
Q ss_pred -ccceeeeecccCcCeEEEEECC-CCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcC-CCCEEEEEeC
Q 016187 180 -RAAYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSK 256 (394)
Q Consensus 180 -~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~g~~ 256 (394)
...++..++.|...|.++.|++ .++.+++++.|++|++|+...++.+.++.+ |..-|....|+| .+.++++++.
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~g---h~~~Iy~a~~sp~~~nlfas~Sg 168 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNG---HNSCIYQAAFSPHIPNLFASASG 168 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecC---CccEEEEEecCCCCCCeEEEccC
Confidence 3457888999999999999998 566788889999999999999999988887 566789999999 5789999999
Q ss_pred CCcEEEEECCCCcEEEEeccCCCCEEEEEECCC-CCeEEEEeCCCcEEEEeCCCCCcc--eeccCCCCEEEEEEeCCC-C
Q 016187 257 DGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS-SPWAATGSMDQKLIIWDLQHSLPR--STCDHEDGVTCLMWLGTS-K 332 (394)
Q Consensus 257 dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~-~ 332 (394)
|+++++||++..-....+..|...|.|+.|+.- ...|+||+.|+.|+.||++..... ...+|.-+|..+.|+|.. .
T Consensus 169 d~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~ 248 (311)
T KOG0277|consen 169 DGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHAS 248 (311)
T ss_pred CceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhh
Confidence 999999999864333348899999999999975 457899999999999999864322 235789999999999974 6
Q ss_pred EEEEEeCCCeEEEEECCCC-eEEEEeecccCceeEEEEcc-CCCEEEEEeCCCcEEEEec
Q 016187 333 YVVTGCVDGKVRVWDSLSG-DCVRTFSGHRDAIQAISVSA-HQDFLVSVSLDGTARVFEI 390 (394)
Q Consensus 333 ~l~sg~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~dg~i~iw~~ 390 (394)
.|++++.|-+++|||...+ .++.+..-|++.|-.+.|++ ++.++|+++.|+.++||+-
T Consensus 249 lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 249 LLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred HhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 8999999999999998744 45667788999999999986 5679999999999999983
No 86
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.7e-33 Score=237.03 Aligned_cols=283 Identities=19% Similarity=0.310 Sum_probs=232.9
Q ss_pred eeeEeecCcccCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEE
Q 016187 98 DWASEIQGHKDSVSSLAFSMDG-QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMW 176 (394)
Q Consensus 98 ~~~~~~~~h~~~V~~v~~s~~g-~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw 176 (394)
.++..|.||.+.|.|++=+|.. ..+|+|+.||.|++||+.+.++..+++.|.+.|..+++.. ..+++++.|.+|+.|
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQW 134 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeee
Confidence 4566789999999999999987 7899999999999999999999999999999999999987 568899999999999
Q ss_pred eCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCC-EEEEEe
Q 016187 177 NADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST-LALSGS 255 (394)
Q Consensus 177 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~g~ 255 (394)
..+. +.++.+.+. +.+..+.-+..+..++||+. .|.|||.....++..+. .....|.++.++|-.. +|++++
T Consensus 135 k~~~-~p~~tilg~-s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~sms---wG~Dti~svkfNpvETsILas~~ 207 (433)
T KOG0268|consen 135 KIDG-PPLHTILGK-SVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMS---WGADSISSVKFNPVETSILASCA 207 (433)
T ss_pred eccC-Ccceeeecc-ccccccccccccccccccCc--eeeecccccCCccceee---cCCCceeEEecCCCcchheeeec
Confidence 8775 345555432 34556666666778888875 58999987766665554 2356789999999654 666777
Q ss_pred CCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC--cceeccCCCCEEEEEEeCCCCE
Q 016187 256 KDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSL--PRSTCDHEDGVTCLMWLGTSKY 333 (394)
Q Consensus 256 ~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~ 333 (394)
.|++|.++|++.+++++++. -....+.++|+|..-.+++++.|..+..||++... .....+|..+|..++|+|.|+-
T Consensus 208 sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~E 286 (433)
T KOG0268|consen 208 SDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQE 286 (433)
T ss_pred cCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcch
Confidence 99999999999998887654 24456789999988889999999999999997542 2334678889999999999999
Q ss_pred EEEEeCCCeEEEEECCCCeEEEEee-cccCceeEEEEccCCCEEEEEeCCCcEEEEec
Q 016187 334 VVTGCVDGKVRVWDSLSGDCVRTFS-GHRDAIQAISVSAHQDFLVSVSLDGTARVFEI 390 (394)
Q Consensus 334 l~sg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~ 390 (394)
+++||.|.+|+||.++.+.....+. .--..|.+|.|+.|.+|++|||+|+.||+|.-
T Consensus 287 fvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 287 FVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred hccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence 9999999999999998776554432 22356999999999999999999999999974
No 87
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.1e-32 Score=225.86 Aligned_cols=291 Identities=22% Similarity=0.402 Sum_probs=248.9
Q ss_pred eeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEe
Q 016187 98 DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177 (394)
Q Consensus 98 ~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~ 177 (394)
.+.+.+.||++.|+.++.......+.++|.|.+.+||.+++|+++.++.+|.+.|++++|++.+.++++++.|++-.||.
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK 218 (481)
T ss_pred eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHH
Confidence 34567899999999999887777999999999999999999999999999999999999999999999999999999996
Q ss_pred ------CCc----------------------------------cceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEE
Q 016187 178 ------ADR----------------------------------AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 217 (394)
Q Consensus 178 ------~~~----------------------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~v 217 (394)
+.. ..++..+.+|...|.+..|...|+.+++++.|.+..+
T Consensus 219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnl 298 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANL 298 (481)
T ss_pred HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccccee
Confidence 110 0024457899999999999999999999999999999
Q ss_pred EcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-cEEEEeccCCCCEEEEEECCCCCeEEEE
Q 016187 218 WNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG-KVVSSLVSHTDSIECIGFSRSSPWAATG 296 (394)
Q Consensus 218 wd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~-~~~~~~~~h~~~i~~v~~~~~~~~l~s~ 296 (394)
||+++++.++.+.+| ...++.++-+|..+++++++.|.+.++||.+.. ..+..|++|++.|+++.|..+. .+++|
T Consensus 299 wDVEtge~v~~LtGH---d~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSg 374 (481)
T KOG0300|consen 299 WDVETGEVVNILTGH---DSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSG 374 (481)
T ss_pred eeeccCceeccccCc---chhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeec
Confidence 999999999988874 567888899999999999999999999999843 3567789999999999998765 47899
Q ss_pred eCCCcEEEEeCCCC-CcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEe-----ecccCceeEEEEc
Q 016187 297 SMDQKLIIWDLQHS-LPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTF-----SGHRDAIQAISVS 370 (394)
Q Consensus 297 s~dg~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~-----~~h~~~v~~l~~~ 370 (394)
+.|.+|++||++.. .+...+.-..+++.++.+..++.++.--.+..|++||+. |..+.++ .||...|.+.+|.
T Consensus 375 SDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrRMV~c~AW~ 453 (481)
T KOG0300|consen 375 SDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRRMVTCCAWL 453 (481)
T ss_pred CCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecC-CCccccCCcccccccceeeeeeecc
Confidence 99999999999864 334445556778888888888888888888999999985 4333333 4899999999998
Q ss_pred cCC--CEEEEEeCCCcEEEEeccCC
Q 016187 371 AHQ--DFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 371 ~~~--~~l~s~s~dg~i~iw~~~~~ 393 (394)
.+. .-|++||-|+.+.-|++...
T Consensus 454 eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 454 EEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ccCcccccccccccceeeeeEeccc
Confidence 654 45889999999999998754
No 88
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=1.5e-31 Score=253.95 Aligned_cols=284 Identities=23% Similarity=0.349 Sum_probs=236.0
Q ss_pred cccCEEEEEEcCCCCEEEEEe--CCCcEEEEeCCC------------CceEEEEecCCCCEEEEEEcCCCCEEEEecCCC
Q 016187 106 HKDSVSSLAFSMDGQLLASGG--LDGLVQIWDPSS------------GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS 171 (394)
Q Consensus 106 h~~~V~~v~~s~~g~~l~t~s--~d~~i~vwd~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~ 171 (394)
+...|.++..+|+|..+|||+ .|+.++||+... .+.++++..|.+.|+|+.|+|+|.+||+||.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 345699999999999999999 999999997532 345677888999999999999999999999999
Q ss_pred eEEEEeCCc------------------cceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCC
Q 016187 172 TVWMWNADR------------------AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHP 233 (394)
Q Consensus 172 ~i~iw~~~~------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 233 (394)
.|.+|.... -+....+.+|...|..+.|+|++.+|++++.|++|.+|+.++.+.+..+++|
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H- 170 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGH- 170 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecc-
Confidence 999998662 1245678899999999999999999999999999999999999888888875
Q ss_pred CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccC------CCCEEEEEECCCCCeEEEEe----CCCcEE
Q 016187 234 YHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSH------TDSIECIGFSRSSPWAATGS----MDQKLI 303 (394)
Q Consensus 234 ~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h------~~~i~~v~~~~~~~~l~s~s----~dg~i~ 303 (394)
...|..+.|.|-|+++++-+.|++|++|++.+-.+.+.+..+ ......+.|||+|.+|++.. .-.++.
T Consensus 171 --~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~ 248 (942)
T KOG0973|consen 171 --QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIA 248 (942)
T ss_pred --cccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeE
Confidence 455777899999999999999999999998776666665543 23467899999999998863 234577
Q ss_pred EEeCCCCC-cceeccCCCCEEEEEEeCC-----CC------------EEEEEeCCCeEEEEECCCCeEEEEee-cccCce
Q 016187 304 IWDLQHSL-PRSTCDHEDGVTCLMWLGT-----SK------------YVVTGCVDGKVRVWDSLSGDCVRTFS-GHRDAI 364 (394)
Q Consensus 304 iwd~~~~~-~~~~~~~~~~v~~~~~~~~-----~~------------~l~sg~~dg~i~iwd~~~~~~~~~~~-~h~~~v 364 (394)
|.+-.+.. .....+|..++.++.|+|. .+ .+|+|+.|++|.||.....+++.... --...|
T Consensus 249 IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI 328 (942)
T KOG0973|consen 249 IIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSI 328 (942)
T ss_pred EEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCce
Confidence 76654443 3456799999999999972 11 68899999999999987766654432 345679
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 365 QAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 365 ~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
.++.|+|||-.|+.+|.||+|.++.++.
T Consensus 329 ~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 329 VDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred eeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 9999999999999999999999998764
No 89
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-32 Score=234.17 Aligned_cols=251 Identities=24% Similarity=0.365 Sum_probs=209.5
Q ss_pred ceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeec-CcccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 016187 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFSMDGQLLASGGLDGLVQIW 134 (394)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~-~h~~~V~~v~~s~~g~~l~t~s~d~~i~vw 134 (394)
-.+++.||..+|..|.|+|++ ++|.++|.|..+++||+.+++....+. +|...+.+++|.|||..+++|+.|+++..|
T Consensus 261 l~~tlvgh~~~V~yi~wSPDd-ryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~w 339 (519)
T KOG0293|consen 261 LKKTLVGHSQPVSYIMWSPDD-RYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMW 339 (519)
T ss_pred eeeeeecccCceEEEEECCCC-CeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEe
Confidence 367788999999999999965 566778999999999999999887664 457899999999999999999999999999
Q ss_pred eCCCCceEEEEecCC-CCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCC
Q 016187 135 DPSSGNLKCTLEGPG-GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA 213 (394)
Q Consensus 135 d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg 213 (394)
|+. |+.+...++.. ..|.+++..++|+++++...|..|++++.+......... ...+|++..++.+++++++--.+.
T Consensus 340 dlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~q 417 (519)
T KOG0293|consen 340 DLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQ 417 (519)
T ss_pred cCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccC
Confidence 986 44444444432 458899999999999999999999999988765444333 346899999999999999999999
Q ss_pred cEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCC-e
Q 016187 214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSP-W 292 (394)
Q Consensus 214 ~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~-~ 292 (394)
.+++||++....+..+.+|.....-|.++--..+..++++|++|+.|+||+..+++++..+.+|...|+||+|+|..+ .
T Consensus 418 ei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m 497 (519)
T KOG0293|consen 418 EIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEM 497 (519)
T ss_pred eeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHH
Confidence 999999997776666666543333344433334668999999999999999999999999999999999999999765 6
Q ss_pred EEEEeCCCcEEEEeCCC
Q 016187 293 AATGSMDQKLIIWDLQH 309 (394)
Q Consensus 293 l~s~s~dg~i~iwd~~~ 309 (394)
+|+++.||+|+||.+..
T Consensus 498 ~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 498 FASASDDGTIRIWGPSD 514 (519)
T ss_pred hhccCCCCeEEEecCCc
Confidence 89999999999998754
No 90
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=1.4e-30 Score=240.51 Aligned_cols=331 Identities=20% Similarity=0.314 Sum_probs=279.6
Q ss_pred eeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeec-CcccCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 016187 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135 (394)
Q Consensus 57 ~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~-~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd 135 (394)
...|.-..+.|++++|..++..++|+|+..|.+.+||++..+.+..++ .|.+.|....|-|....|+|++.|..+++|-
T Consensus 237 l~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~v 316 (910)
T KOG1539|consen 237 LMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWV 316 (910)
T ss_pred EEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEE
Confidence 334443348999999999888899999999999999999988888776 7999999999999999999999999999986
Q ss_pred CCCC----ceEEEEecCCCCEEEEEEc-CCCCEEEEecCCCeEEEEeCCcc-------c--------e------------
Q 016187 136 PSSG----NLKCTLEGPGGGVEWVSWH-PRGHIVLAGSEDSTVWMWNADRA-------A--------Y------------ 183 (394)
Q Consensus 136 ~~~~----~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s~d~~i~iw~~~~~-------~--------~------------ 183 (394)
..++ +.+..-.+|..+..+++|. .++..+++++.|++++.+++... + .
T Consensus 317 fD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p 396 (910)
T KOG1539|consen 317 FDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLP 396 (910)
T ss_pred eeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCC
Confidence 5544 3455567899999999998 67889999999998887764210 0 0
Q ss_pred -eee-------------------------------------------ecccCcCeEEEEECCCCCeEEEEeCCCcEEEEc
Q 016187 184 -LNM-------------------------------------------FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219 (394)
Q Consensus 184 -~~~-------------------------------------------~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 219 (394)
+.. ++.....+++++.++-|++.+.|+..|+|-+|+
T Consensus 397 ~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fN 476 (910)
T KOG1539|consen 397 PIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFN 476 (910)
T ss_pred cceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEE
Confidence 000 001124578889999999999999999999999
Q ss_pred CCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCC
Q 016187 220 PKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMD 299 (394)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~d 299 (394)
+.+|-....+...+.|..+|+.++...-++.+++++.+|.+++||..+..++.++. -..++.++..+.....+|.+..|
T Consensus 477 mQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr~s~l~a~~~dd 555 (910)
T KOG1539|consen 477 MQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHRVSDLLAIALDD 555 (910)
T ss_pred cccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeeehhhhhhhhcCc
Confidence 99998777776667789999999999999999999999999999999888777665 35678888899888999999999
Q ss_pred CcEEEEeCCCC-CcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEE
Q 016187 300 QKLIIWDLQHS-LPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVS 378 (394)
Q Consensus 300 g~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s 378 (394)
-.|+++|+.+. ..+...+|...|+.++|+|+|++|++++.|++|++||+.++.++..+.- ..+.+.+.|+|+|.+||+
T Consensus 556 f~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v-d~~~~sls~SPngD~LAT 634 (910)
T KOG1539|consen 556 FSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV-DSPCTSLSFSPNGDFLAT 634 (910)
T ss_pred eeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec-CCcceeeEECCCCCEEEE
Confidence 99999998765 4456678999999999999999999999999999999999999987764 668899999999999999
Q ss_pred EeCC-CcEEEEe
Q 016187 379 VSLD-GTARVFE 389 (394)
Q Consensus 379 ~s~d-g~i~iw~ 389 (394)
+..| .-|.+|.
T Consensus 635 ~Hvd~~gIylWs 646 (910)
T KOG1539|consen 635 VHVDQNGIYLWS 646 (910)
T ss_pred EEecCceEEEEE
Confidence 9988 6799995
No 91
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=1.1e-30 Score=245.66 Aligned_cols=249 Identities=13% Similarity=0.176 Sum_probs=196.9
Q ss_pred EecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCc--------eEEEEecCCCCE
Q 016187 82 TGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD-GQLLASGGLDGLVQIWDPSSGN--------LKCTLEGPGGGV 152 (394)
Q Consensus 82 sg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~-g~~l~t~s~d~~i~vwd~~~~~--------~~~~~~~~~~~v 152 (394)
+||.++.+++|+......+..+.+|.++|.+++|+|+ +.+||||+.|++|+|||+.++. .+..+.+|...|
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V 128 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence 4778899999998877788899999999999999997 7899999999999999997642 234678899999
Q ss_pred EEEEEcCCCCE-EEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcC
Q 016187 153 EWVSWHPRGHI-VLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRG 231 (394)
Q Consensus 153 ~~~~~~~~~~~-l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 231 (394)
.+++|+|++.. +++++.|++|++||+.+++....+. |...|.+++|+|+|.+|++++.|+.|+|||+++++.+..+.+
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~g 207 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHI 207 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 99999999875 5789999999999999887766664 567899999999999999999999999999999988887776
Q ss_pred CCCcc--cCeEEEEEcCCCCEEEEEeCCC----cEEEEECCC-CcEEEEec--cCCCCEEEEEECCCCCeEEEEeCCCcE
Q 016187 232 HPYHT--EGLTCLTISADSTLALSGSKDG----SVHMVNITT-GKVVSSLV--SHTDSIECIGFSRSSPWAATGSMDQKL 302 (394)
Q Consensus 232 ~~~~~--~~i~~~~~~~~~~~l~~g~~dg----~i~i~d~~~-~~~~~~~~--~h~~~i~~v~~~~~~~~l~s~s~dg~i 302 (394)
|.... ..+....+++++.++++++.|+ .|++||+++ ++++..+. .+...+......+++.++++|+.|++|
T Consensus 208 H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tI 287 (568)
T PTZ00420 208 HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNC 287 (568)
T ss_pred ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeE
Confidence 53211 1122334568989999887764 799999985 55555432 333444444456678899999999999
Q ss_pred EEEeCCCCCcce--eccCCCCEEEEEEeCCC
Q 016187 303 IIWDLQHSLPRS--TCDHEDGVTCLMWLGTS 331 (394)
Q Consensus 303 ~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~ 331 (394)
++|++....... ...+..+..+++|.|..
T Consensus 288 r~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 288 RYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEEEccCCcEEeecccccCCCccceEEcccc
Confidence 999997653222 22355667788888864
No 92
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=4.1e-30 Score=225.16 Aligned_cols=328 Identities=20% Similarity=0.325 Sum_probs=263.6
Q ss_pred CceeeeeccCCcEEEEEEcCCCCcEEEEecCCC--------eEEEEEcCCCeeeEeecCcccCEEEEEEcC--CCCEEEE
Q 016187 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDD--------KGFFWRINQGDWASEIQGHKDSVSSLAFSM--DGQLLAS 124 (394)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~--------~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~--~g~~l~t 124 (394)
...+.+.||++.|.|++.|| +.-++|+|-.-+ .+++||..+-..+..+..-...|.|++||+ .|.+|+.
T Consensus 95 ~~Qr~y~GH~ddikc~~vHP-dri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~ 173 (626)
T KOG2106|consen 95 RSQRHYLGHNDDIKCMAVHP-DRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCA 173 (626)
T ss_pred hhcccccCCCCceEEEeecC-CceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEE
Confidence 35566789999999999999 466788875555 389999877777777777778899999997 3556554
Q ss_pred E--eCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceee---eeccc-CcCeEEEE
Q 016187 125 G--GLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN---MFSGH-GSSVTCGD 198 (394)
Q Consensus 125 ~--s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~---~~~~h-~~~v~~~~ 198 (394)
. +.+..+.|||...+......+...+.|..+.|+|.+..++.....+.+..|+.+.+...+ .+.++ ...|.|+.
T Consensus 174 vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~ 253 (626)
T KOG2106|consen 174 VDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVT 253 (626)
T ss_pred ecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEE
Confidence 4 455678899998888777777778889999999988767666677999999988765543 23333 36789999
Q ss_pred ECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---------
Q 016187 199 FTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK--------- 269 (394)
Q Consensus 199 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~--------- 269 (394)
|.++|. +++|.++|.|.||+..+.+..+... .|..+|.+++.-.+|+++- |+.|..|..||-.-.+
T Consensus 254 F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~---aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~ 328 (626)
T KOG2106|consen 254 FLENGD-VITGDSGGNILIWSKGTNRISKQVH---AHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQ 328 (626)
T ss_pred EcCCCC-EEeecCCceEEEEeCCCceEEeEee---ecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchh
Confidence 999886 6799999999999987666544433 5889999999999998765 9999999999831100
Q ss_pred ----------------------EE---------EEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccC
Q 016187 270 ----------------------VV---------SSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDH 318 (394)
Q Consensus 270 ----------------------~~---------~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 318 (394)
++ ...++|.+....++.+|+...+++++.|+.++||+ ..++.....-
T Consensus 329 ~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~ 406 (626)
T KOG2106|consen 329 FGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKII 406 (626)
T ss_pred cCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEe
Confidence 00 01234777788899999999999999999999999 3444555556
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 319 EDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 319 ~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
.+++.|+.|+|.+ .|+.|+..|...+.|..+...+...+. +.+++.|+|+|+|.+||.|+.|+.|.||.+..
T Consensus 407 ~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~ 478 (626)
T KOG2106|consen 407 EDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSA 478 (626)
T ss_pred cCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECC
Confidence 7789999999999 999999999999999999777765555 88999999999999999999999999999874
No 93
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-29 Score=210.54 Aligned_cols=287 Identities=16% Similarity=0.258 Sum_probs=237.0
Q ss_pred ceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeC--CCcEEE
Q 016187 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL--DGLVQI 133 (394)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~--d~~i~v 133 (394)
+.+.|..-.+.|+++.|+++ +.++++++.|.+++|||..+++...++..++-.|..++|......++-++. |.+||.
T Consensus 6 ~ak~f~~~~~~i~sl~fs~~-G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 6 PAKVFRETNGKINSLDFSDD-GLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred cccccccCCCceeEEEecCC-CCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence 34455556778999999996 556777899999999999999999999999999999999887777776766 899999
Q ss_pred EeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCC
Q 016187 134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA 213 (394)
Q Consensus 134 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg 213 (394)
.++.+.+.+..+.+|...|..++.+|-+..+++++.|++|++||++..++...+..-..+ .++|.|.|-.+|++....
T Consensus 85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~~~ 162 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANGSE 162 (311)
T ss_pred EEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecCCC
Confidence 999999999999999999999999999999999999999999999977776655433333 468999999999999888
Q ss_pred cEEEEcCCCCc--eEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCE---EEEEECC
Q 016187 214 TLRVWNPKSGE--NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSI---ECIGFSR 288 (394)
Q Consensus 214 ~i~vwd~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i---~~v~~~~ 288 (394)
.|++||++.-. ....+..........+.+.|+|+|++++.+...+.+++.|.-+|..+.++..+...- -...|+|
T Consensus 163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftP 242 (311)
T KOG1446|consen 163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTP 242 (311)
T ss_pred eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECC
Confidence 99999998642 222332222234568899999999999999999999999999999988887765432 4667999
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCCccee-cc-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 016187 289 SSPWAATGSMDQKLIIWDLQHSLPRST-CD-HEDGVTCLMWLGTSKYVVTGCVDGKVRVWD 347 (394)
Q Consensus 289 ~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd 347 (394)
+++++++|+.||+|.+|++.+...... .+ +...+.|+.|+|...+++++ +..+-+|=
T Consensus 243 ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~ 301 (311)
T KOG1446|consen 243 DSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWL 301 (311)
T ss_pred CCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEe
Confidence 999999999999999999987654433 23 56788999999987777765 56688884
No 94
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1e-30 Score=216.96 Aligned_cols=283 Identities=22% Similarity=0.268 Sum_probs=218.2
Q ss_pred EeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceE--EEE--ecCCCCEEEEEEcCCCCE-EEEecCCCeEEE
Q 016187 101 SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK--CTL--EGPGGGVEWVSWHPRGHI-VLAGSEDSTVWM 175 (394)
Q Consensus 101 ~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~--~~~--~~~~~~v~~~~~~~~~~~-l~~~s~d~~i~i 175 (394)
..|+||.+.|++|+||.||++|||++.|++|++|++...... ..+ .-..+..+.+.|.|+-+. ++++-...++++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 458999999999999999999999999999999998764321 011 112235678999999774 455556678999
Q ss_pred EeCCcc---ce---------eeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEE
Q 016187 176 WNADRA---AY---------LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLT 243 (394)
Q Consensus 176 w~~~~~---~~---------~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~ 243 (394)
|.+... .. ...-..|...+..+-...++++|++++.|..|.+|+++ |+.+..+...+ ..-...+
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq---~~n~~aa 235 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQ---SSNYDAA 235 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccc---cccccee
Confidence 976432 11 11123466677777777889999999999999999998 88877765432 2344568
Q ss_pred EcCCCCEEEEEeCCCcEEEEECC---CC-----cEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC----
Q 016187 244 ISADSTLALSGSKDGSVHMVNIT---TG-----KVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSL---- 311 (394)
Q Consensus 244 ~~~~~~~l~~g~~dg~i~i~d~~---~~-----~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~---- 311 (394)
++|+|+++++++----+++|.+- .| +.+.++.+|...|..++|+++...+++.|.||+++|||+.-..
T Consensus 236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~q 315 (420)
T KOG2096|consen 236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQ 315 (420)
T ss_pred eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCC
Confidence 99999999999999999999863 22 2356788999999999999999999999999999999974210
Q ss_pred --------cceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEee-cccCceeEEEEccCCCEEEEEeCC
Q 016187 312 --------PRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFS-GHRDAIQAISVSAHQDFLVSVSLD 382 (394)
Q Consensus 312 --------~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~s~d 382 (394)
+...+........+..+|.++.|+.. ....++++..++|+....++ .|...|.+++|+++|++++|+| |
T Consensus 316 Dpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s-~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-d 393 (420)
T KOG2096|consen 316 DPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVS-FGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-D 393 (420)
T ss_pred CchHhhcCCcchhhcCCCceEEEeCCCCcEEEee-cCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-c
Confidence 11122223344578899999887764 46689999999998887775 7999999999999999999998 6
Q ss_pred CcEEEEe
Q 016187 383 GTARVFE 389 (394)
Q Consensus 383 g~i~iw~ 389 (394)
+.++++.
T Consensus 394 r~vrv~~ 400 (420)
T KOG2096|consen 394 RYVRVIR 400 (420)
T ss_pred eeeeeec
Confidence 7777765
No 95
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=3.9e-30 Score=241.81 Aligned_cols=244 Identities=17% Similarity=0.306 Sum_probs=195.8
Q ss_pred EeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCC-CCEEEEecCCCeEEEEeCCccc--------eeeeecccCcCeE
Q 016187 125 GGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNADRAA--------YLNMFSGHGSSVT 195 (394)
Q Consensus 125 ~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~s~d~~i~iw~~~~~~--------~~~~~~~h~~~v~ 195 (394)
|+.++.|++|+......+..+.+|.++|.+++|+|. +.+|++|+.|++|++|++.+.. .+..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 667889999998877778889999999999999997 7899999999999999987532 2346788999999
Q ss_pred EEEECCCCCe-EEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 016187 196 CGDFTPDGKT-ICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL 274 (394)
Q Consensus 196 ~~~~~~~~~~-l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~ 274 (394)
+++|+|++.. |++++.|++|++||+++++.+..+. +...+.+++|+|+|.++++++.|+.|++||+++++.+.++
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~----~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN----MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF 205 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe----cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence 9999998876 5789999999999999988766554 2356999999999999999999999999999999999999
Q ss_pred ccCCCCEEE-----EEECCCCCeEEEEeCCC----cEEEEeCCC-CCcceeccCCCC---EEEEEEeCCCCEEEEEeCCC
Q 016187 275 VSHTDSIEC-----IGFSRSSPWAATGSMDQ----KLIIWDLQH-SLPRSTCDHEDG---VTCLMWLGTSKYVVTGCVDG 341 (394)
Q Consensus 275 ~~h~~~i~~-----v~~~~~~~~l~s~s~dg----~i~iwd~~~-~~~~~~~~~~~~---v~~~~~~~~~~~l~sg~~dg 341 (394)
.+|.+.+.+ ..|++++.++++++.|+ +|+|||++. ..+.....+... +......+++.++++|+.|+
T Consensus 206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~ 285 (568)
T PTZ00420 206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDG 285 (568)
T ss_pred ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCC
Confidence 999876543 34568888999888774 799999985 333333333322 22333345588899999999
Q ss_pred eEEEEECCCCeEE--EEeecccCceeEEEEccCC
Q 016187 342 KVRVWDSLSGDCV--RTFSGHRDAIQAISVSAHQ 373 (394)
Q Consensus 342 ~i~iwd~~~~~~~--~~~~~h~~~v~~l~~~~~~ 373 (394)
.|++|++..+.+. ..+. +..++.+++|.|+.
T Consensus 286 tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 286 NCRYYQHSLGSIRKVNEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred eEEEEEccCCcEEeecccc-cCCCccceEEcccc
Confidence 9999999877532 2233 56788999999964
No 96
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.1e-31 Score=247.01 Aligned_cols=244 Identities=19% Similarity=0.324 Sum_probs=201.2
Q ss_pred ee-ccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCC--------------------------------C---------
Q 016187 60 FS-GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ--------------------------------G--------- 97 (394)
Q Consensus 60 ~~-~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~--------------------------------~--------- 97 (394)
+. +|.+.|+++.|+| ++++|||||.|+.|+||.+.. .
T Consensus 262 ~~~ah~gaIw~mKFS~-DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 262 ISNAHKGAIWAMKFSH-DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred cccccCCcEEEEEeCC-CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 44 8999999999999 578999999999999999754 0
Q ss_pred -------------------eeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEc
Q 016187 98 -------------------DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWH 158 (394)
Q Consensus 98 -------------------~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 158 (394)
+++..+.||.+.|..+.||.++ +|+++|.|.+||+|++...++++.+. |..-|+||+|+
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFn 418 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFN 418 (712)
T ss_pred cccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEec
Confidence 0223457999999999999864 88899999999999999999998887 78899999999
Q ss_pred C-CCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEc-----CC
Q 016187 159 P-RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR-----GH 232 (394)
Q Consensus 159 ~-~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-----~~ 232 (394)
| |.+++++|+-|+.++||++...+...-... ..-|+++.|.|+|+..+.|+.+|.+++|++...+...... ..
T Consensus 419 PvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K 497 (712)
T KOG0283|consen 419 PVDDRYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK 497 (712)
T ss_pred ccCCCcEeecccccceEEeecCcCeeEeehhh-hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence 9 567999999999999999988775544333 3789999999999999999999999999998765433221 11
Q ss_pred CCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEeccCCC--CEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 016187 233 PYHTEGLTCLTISADS-TLALSGSKDGSVHMVNITTGKVVSSLVSHTD--SIECIGFSRSSPWAATGSMDQKLIIWDL 307 (394)
Q Consensus 233 ~~~~~~i~~~~~~~~~-~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~--~i~~v~~~~~~~~l~s~s~dg~i~iwd~ 307 (394)
......|+.+.+.|.. ..+++.+.|..|+|+|++...++..++++.. .-....|+.+|+++++++.|..|.+|++
T Consensus 498 k~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 498 KKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred cccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeC
Confidence 1112379999998754 3588889999999999988888888876432 2235678999999999999999999997
No 97
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=100.00 E-value=2.9e-29 Score=225.16 Aligned_cols=286 Identities=16% Similarity=0.169 Sum_probs=222.7
Q ss_pred cEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEE
Q 016187 78 TLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLL-ASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVS 156 (394)
Q Consensus 78 ~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l-~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~ 156 (394)
.+++|++.|+.+++||+.+++.+..+.+|.. +.+++|+|+|+.+ ++++.++.|++||..+++....+..+. .+..++
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~ 79 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFA 79 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEE
Confidence 4788999999999999999988888876644 6789999999976 567788999999999988877665443 356789
Q ss_pred EcCCCCEEEE-ecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCC-cEEEEcCCCCceEEEEcCCCC
Q 016187 157 WHPRGHIVLA-GSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA-TLRVWNPKSGENIHVIRGHPY 234 (394)
Q Consensus 157 ~~~~~~~l~~-~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~ 234 (394)
|+|+++.+++ ++.++.+++||+.+.+.+..+.. ...+.+++|+|+|+++++++.++ .+.+||..+++....+..
T Consensus 80 ~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~--- 155 (300)
T TIGR03866 80 LHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV--- 155 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc---
Confidence 9999987655 45689999999988776666543 23467899999999999988775 467789987766544321
Q ss_pred cccCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCcEEEEeccCC-----C--CEEEEEECCCCCeEEE-EeCCCcEEEE
Q 016187 235 HTEGLTCLTISADSTLALSG-SKDGSVHMVNITTGKVVSSLVSHT-----D--SIECIGFSRSSPWAAT-GSMDQKLIIW 305 (394)
Q Consensus 235 ~~~~i~~~~~~~~~~~l~~g-~~dg~i~i~d~~~~~~~~~~~~h~-----~--~i~~v~~~~~~~~l~s-~s~dg~i~iw 305 (394)
.....++.++|++++++++ ..++.|++||+.+++.+..+..+. . ....++|+|++++++. .+.++++.+|
T Consensus 156 -~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~ 234 (300)
T TIGR03866 156 -DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVV 234 (300)
T ss_pred -CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEE
Confidence 2245678999999988654 469999999999998776654321 1 2346889999998544 4556789999
Q ss_pred eCCCCCcceeccCCCCEEEEEEeCCCCEEEEE-eCCCeEEEEECCCCeEEEEeecccCceeEEEEcc
Q 016187 306 DLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTG-CVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSA 371 (394)
Q Consensus 306 d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~ 371 (394)
|+.+........+...+.+++|+|++++|+++ ..+|.|++||+.+++++.++... ...+.++|+|
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 235 DAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred ECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 99876554444455678899999999999886 46899999999999999999865 4458898875
No 98
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.3e-30 Score=225.94 Aligned_cols=295 Identities=23% Similarity=0.372 Sum_probs=237.7
Q ss_pred eeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeee----Ee------------e--cCcccCEEEEEEcCC
Q 016187 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWA----SE------------I--QGHKDSVSSLAFSMD 118 (394)
Q Consensus 57 ~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~----~~------------~--~~h~~~V~~v~~s~~ 118 (394)
......|.-+|.+++++|++. +..+++.|++|.-|++.+++-. .. . ++|.+.|.+++.|+|
T Consensus 135 ~~~~~~H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D 213 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD 213 (479)
T ss_pred ceeeccccCcceEEEeecccc-ceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence 456678999999999999755 5668999999999998776522 11 1 278899999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEE
Q 016187 119 GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGD 198 (394)
Q Consensus 119 g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~ 198 (394)
|+|||+|+.|..|.||+..+.+.+..+.+|.+.|.+++|-...+.+++++.|+++++|+++...++.++.||.+.|..+.
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred CcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999998
Q ss_pred ECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEecc-C
Q 016187 199 FTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS-H 277 (394)
Q Consensus 199 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~-h 277 (394)
...-++.+-.|+.|+++++|++....++ .+.+ +...+-|+++-. ...+++|+.+|.|.+|++.+.+++.+... |
T Consensus 294 aL~reR~vtVGgrDrT~rlwKi~eesql-ifrg---~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AH 368 (479)
T KOG0299|consen 294 ALSRERCVTVGGRDRTVRLWKIPEESQL-IFRG---GEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAH 368 (479)
T ss_pred hhcccceEEeccccceeEEEecccccee-eeeC---CCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeeccc
Confidence 8878888888889999999999654443 3333 355688888865 45679999999999999999888876532 2
Q ss_pred CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC----eE
Q 016187 278 TDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSG----DC 353 (394)
Q Consensus 278 ~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~----~~ 353 (394)
. ..|.. ....++..|++++..|...++++|+.+|.|++|-+..+ .+
T Consensus 369 g-------v~~~~-----------------------~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~ 418 (479)
T KOG0299|consen 369 G-------VIPEL-----------------------DPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINL 418 (479)
T ss_pred c-------ccCCc-----------------------cccccccceeeeEecccCceEEecCCCCceEEEEecCCccccce
Confidence 1 01110 01122356889999999999999999999999987766 44
Q ss_pred EEEeecccCceeEEEEccCCCE-EEEEeCCCcEEEE
Q 016187 354 VRTFSGHRDAIQAISVSAHQDF-LVSVSLDGTARVF 388 (394)
Q Consensus 354 ~~~~~~h~~~v~~l~~~~~~~~-l~s~s~dg~i~iw 388 (394)
+..+. -.+.|++|+|+++|+. ++..+....+--|
T Consensus 419 l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 419 LYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred eeecc-cccEEEEEEEccCCCEEEEeccccccccee
Confidence 55555 5678999999999995 4455555544434
No 99
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-30 Score=215.86 Aligned_cols=246 Identities=20% Similarity=0.357 Sum_probs=206.5
Q ss_pred CceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCC--EEEEEeCCCcEE
Q 016187 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ--LLASGGLDGLVQ 132 (394)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~--~l~t~s~d~~i~ 132 (394)
.+...|..|.+++++||.+ +.++||||.|.+|+|||+.....+..+-.|.+.|+++.|.+.-. .|++|+.||.|.
T Consensus 34 ~~lF~~~aH~~sitavAVs---~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~ 110 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAVS---GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHII 110 (362)
T ss_pred eccccccccccceeEEEec---ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEE
Confidence 3456678999999999985 56899999999999999999888889999999999999998775 899999999999
Q ss_pred EEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCC
Q 016187 133 IWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD 212 (394)
Q Consensus 133 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 212 (394)
+|+....+.+.+++.|.+.|+.++.||.+++.++.+.|+.+++||+-+++.-..+.- ....+.+.|+|.|.+++.+..+
T Consensus 111 iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~ 189 (362)
T KOG0294|consen 111 IWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRN 189 (362)
T ss_pred EEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEecc
Confidence 999999999999999999999999999999999999999999999987764433322 1223448999999999888775
Q ss_pred CcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEE--CCCC
Q 016187 213 ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGF--SRSS 290 (394)
Q Consensus 213 g~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~--~~~~ 290 (394)
+ |-+|.+.+......+.. ...+.|+.|- ++..+++|..|+.|.+||..+..++..+.+|...|.++.+ .|.+
T Consensus 190 ~-i~i~q~d~A~v~~~i~~----~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~ 263 (362)
T KOG0294|consen 190 K-IDIYQLDNASVFREIEN----PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEH 263 (362)
T ss_pred E-EEEEecccHhHhhhhhc----cccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCc
Confidence 4 78898766543333221 1335555554 5678899999999999999999999999999999999984 4678
Q ss_pred CeEEEEeCCCcEEEEeCCCC
Q 016187 291 PWAATGSMDQKLIIWDLQHS 310 (394)
Q Consensus 291 ~~l~s~s~dg~i~iwd~~~~ 310 (394)
.+|+|+|.||.|++||+...
T Consensus 264 ~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 264 EYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eEEEEeccCceEEEEEcccc
Confidence 89999999999999998754
No 100
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-30 Score=234.24 Aligned_cols=274 Identities=23% Similarity=0.385 Sum_probs=232.6
Q ss_pred EEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEec-
Q 016187 69 SVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG- 147 (394)
Q Consensus 69 ~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~- 147 (394)
-+.|+. .+.||.|. ...+++|+..+++......-+.+.|+++.|+++|++|++|..+|.|.|||..+.+....+.+
T Consensus 182 lldWss--~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~ 258 (484)
T KOG0305|consen 182 LLDWSS--ANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS 258 (484)
T ss_pred Hhhccc--CCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC
Confidence 346774 34666553 46899999999887666665689999999999999999999999999999999988888888
Q ss_pred CCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeee-ecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceE
Q 016187 148 PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM-FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENI 226 (394)
Q Consensus 148 ~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 226 (394)
|...|-+++|. +..+.+|+.++.|..+|++..+.... +.+|...|-.++|+++++++|+|+.|..+.|||......+
T Consensus 259 h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~ 336 (484)
T KOG0305|consen 259 HASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPK 336 (484)
T ss_pred cCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcccc
Confidence 88999999999 67899999999999999987655444 8899999999999999999999999999999999776666
Q ss_pred EEEcCCCCcccCeEEEEEcC-CCCEEEEE--eCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEE--eCCCc
Q 016187 227 HVIRGHPYHTEGLTCLTISA-DSTLALSG--SKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATG--SMDQK 301 (394)
Q Consensus 227 ~~~~~~~~~~~~i~~~~~~~-~~~~l~~g--~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~--s~dg~ 301 (394)
..+.. |...|..++|+| ...+||+| +.|++|++||..+++.+..+.. ...|..+.|++..+-|+++ ..++.
T Consensus 337 ~~~~~---H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~ 412 (484)
T KOG0305|consen 337 FTFTE---HTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQ 412 (484)
T ss_pred EEEec---cceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCc
Confidence 66655 567899999999 45677775 4799999999999998887753 5789999999998665553 45778
Q ss_pred EEEEeCCCC-CcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Q 016187 302 LIIWDLQHS-LPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSG 351 (394)
Q Consensus 302 i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~ 351 (394)
|.||+..+. ......+|...|..++++|++.++++|+.|.++++|++-..
T Consensus 413 i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 413 ITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 999998654 34456789999999999999999999999999999997654
No 101
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=100.00 E-value=1.4e-30 Score=236.01 Aligned_cols=277 Identities=26% Similarity=0.409 Sum_probs=235.0
Q ss_pred eeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeE--eecCcccCEEE-EEEcC-CCCEEEEEeCCCcEE
Q 016187 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWAS--EIQGHKDSVSS-LAFSM-DGQLLASGGLDGLVQ 132 (394)
Q Consensus 57 ~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~--~~~~h~~~V~~-v~~s~-~g~~l~t~s~d~~i~ 132 (394)
.+.+.||...|..++.-+ ...++++|.|+++++|+-...+++. .+.+|.+.|.. ++|-+ ++.+|++|+.|.++.
T Consensus 7 s~~l~gH~~DVr~v~~~~--~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~ 84 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTD--GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTII 84 (745)
T ss_pred EEEeccCccchheeEecC--CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEE
Confidence 567889999999998865 3468899999999999987666654 57788888877 88875 555799999999999
Q ss_pred EEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCC
Q 016187 133 IWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD 212 (394)
Q Consensus 133 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 212 (394)
+|.+.+.....++.+|...|.+++...++. +++||.|.++++|..... ...+.+|..+|.++++-|.+ .++||+.|
T Consensus 85 v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l--~~~l~gH~asVWAv~~l~e~-~~vTgsaD 160 (745)
T KOG0301|consen 85 VFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGEL--VYSLQGHTASVWAVASLPEN-TYVTGSAD 160 (745)
T ss_pred EEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhh--hcccCCcchheeeeeecCCC-cEEeccCc
Confidence 999999999999999999999998777776 999999999999987543 34588999999999999987 88999999
Q ss_pred CcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCe
Q 016187 213 ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPW 292 (394)
Q Consensus 213 g~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~ 292 (394)
++||+|.- ++.++++.+ |.+-|+.+++-+++. +++++.||.|++|++ +|.++..+.+|+.-|+++...+++..
T Consensus 161 KtIklWk~--~~~l~tf~g---HtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~ 233 (745)
T KOG0301|consen 161 KTIKLWKG--GTLLKTFSG---HTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGL 233 (745)
T ss_pred ceeeeccC--Cchhhhhcc---chhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCe
Confidence 99999974 566667765 678899999887655 588999999999999 78889999999999999998888999
Q ss_pred EEEEeCCCcEEEEeCCCCCcceeccCCC-CEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 016187 293 AATGSMDQKLIIWDLQHSLPRSTCDHED-GVTCLMWLGTSKYVVTGCVDGKVRVWDSL 349 (394)
Q Consensus 293 l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~sg~~dg~i~iwd~~ 349 (394)
+++++.|++++||+.. .+.....|+. .++++.+.++|. +++|+.||.||||...
T Consensus 234 Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 234 IVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred EEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 9999999999999976 3444445554 688888777775 6788899999999754
No 102
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=1.7e-30 Score=225.22 Aligned_cols=247 Identities=21% Similarity=0.404 Sum_probs=208.9
Q ss_pred eccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCe----------eeEeecCcccCEEEEEEcCCC-CEEEEEeCCC
Q 016187 61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD----------WASEIQGHKDSVSSLAFSMDG-QLLASGGLDG 129 (394)
Q Consensus 61 ~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~----------~~~~~~~h~~~V~~v~~s~~g-~~l~t~s~d~ 129 (394)
-.|.++|+.+...|++..++||++..+.++|||+.+.. +...|.||.+.-++++|++.. -+|++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 46999999999999999999999999999999976432 223789999988999999865 4789999999
Q ss_pred cEEEEeCCCCc-------eEEEEecCCCCEEEEEEcCCC-CEEEEecCCCeEEEEeCC--ccceeeeecccCcCeEEEEE
Q 016187 130 LVQIWDPSSGN-------LKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNAD--RAAYLNMFSGHGSSVTCGDF 199 (394)
Q Consensus 130 ~i~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~d~~i~iw~~~--~~~~~~~~~~h~~~v~~~~~ 199 (394)
+|.+||+.... ....+.+|...|..++|++.. .++++++.|+.+.|||++ +.+......+|.+++.|++|
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f 280 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF 280 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence 99999987542 245678899999999999965 578899999999999999 56666778899999999999
Q ss_pred CC-CCCeEEEEeCCCcEEEEcCCCCc-eEEEEcCCCCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCC--------
Q 016187 200 TP-DGKTICTGSDDATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISAD-STLALSGSKDGSVHMVNITTG-------- 268 (394)
Q Consensus 200 ~~-~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~g~~dg~i~i~d~~~~-------- 268 (394)
+| ++..||||+.|++|++||+|+.. +++.+.+ |...|.++.|+|. .+++++++.|+.+.+||+..-
T Consensus 281 np~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~---H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~ed 357 (422)
T KOG0264|consen 281 NPFNEFILATGSADKTVALWDLRNLNKPLHTFEG---HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPED 357 (422)
T ss_pred CCCCCceEEeccCCCcEEEeechhcccCceeccC---CCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhh
Confidence 99 56778999999999999998754 4455544 6788999999996 578889999999999998641
Q ss_pred ------cEEEEeccCCCCEEEEEECCCCCe-EEEEeCCCcEEEEeCCCC
Q 016187 269 ------KVVSSLVSHTDSIECIGFSRSSPW-AATGSMDQKLIIWDLQHS 310 (394)
Q Consensus 269 ------~~~~~~~~h~~~i~~v~~~~~~~~-l~s~s~dg~i~iwd~~~~ 310 (394)
+++...-+|+..|..+.|+|+.++ ++|.+.|+.+.||.+...
T Consensus 358 a~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 358 AEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred hccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 235666789999999999999887 678899999999998644
No 103
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.98 E-value=3.9e-30 Score=233.78 Aligned_cols=321 Identities=17% Similarity=0.304 Sum_probs=253.4
Q ss_pred EEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeee---EeecCcccCEEEEEEcCC-----------CCEEEEEeCCCcEE
Q 016187 67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWA---SEIQGHKDSVSSLAFSMD-----------GQLLASGGLDGLVQ 132 (394)
Q Consensus 67 v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~---~~~~~h~~~V~~v~~s~~-----------g~~l~t~s~d~~i~ 132 (394)
.-++.|.|+.. .|.-...|..++|||+..-+.+ ..+-.|...|+.+.--|- ..-+.|++.|++||
T Consensus 327 ~IA~~Fdet~~-klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIR 405 (1080)
T KOG1408|consen 327 AIACQFDETTD-KLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIR 405 (1080)
T ss_pred eeEEEecCCCc-eEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEE
Confidence 34667888644 5666788999999998654322 334458887877765441 22588999999999
Q ss_pred EEeCCCCc---eE----------EEE------------------------ecCCCCEEEEEEcCCCCEEEEecCCCeEEE
Q 016187 133 IWDPSSGN---LK----------CTL------------------------EGPGGGVEWVSWHPRGHIVLAGSEDSTVWM 175 (394)
Q Consensus 133 vwd~~~~~---~~----------~~~------------------------~~~~~~v~~~~~~~~~~~l~~~s~d~~i~i 175 (394)
+|++..+. .. ... -+..-++.+++.+|++++|++|..-|++++
T Consensus 406 lW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrV 485 (1080)
T KOG1408|consen 406 LWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRV 485 (1080)
T ss_pred EeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEE
Confidence 99986521 10 000 012336899999999999999999999999
Q ss_pred EeCCccceeeeecccCcCeEEEEECC---CCCeEEEEeCCCcEEEEcCCCCc-eEEEEcCCCCcccCeEEEEEcCCC--C
Q 016187 176 WNADRAAYLNMFSGHGSSVTCGDFTP---DGKTICTGSDDATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISADS--T 249 (394)
Q Consensus 176 w~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~--~ 249 (394)
|++........+.+|...|.|+.|+. ..++||+++.|+.|.|+|+..+- .+.++.+ |...|+++.|...| .
T Consensus 486 y~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~---HSssITsvKFa~~gln~ 562 (1080)
T KOG1408|consen 486 YDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDG---HSSSITSVKFACNGLNR 562 (1080)
T ss_pred EEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcc---cccceeEEEEeecCCce
Confidence 99999999999999999999999985 35789999999999999986542 2334443 67789999998877 7
Q ss_pred EEEEEeCCCcEEEEECCC---CcEEEE--eccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCccee----ccCCC
Q 016187 250 LALSGSKDGSVHMVNITT---GKVVSS--LVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRST----CDHED 320 (394)
Q Consensus 250 ~l~~g~~dg~i~i~d~~~---~~~~~~--~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~----~~~~~ 320 (394)
.+++++.|..|.+=-.+. +.+... -......++.|+..|..+++++++.|..|+||++...+.... ..|++
T Consensus 563 ~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG 642 (1080)
T KOG1408|consen 563 KMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEG 642 (1080)
T ss_pred EEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCC
Confidence 888999998886533321 221110 111235688999999999999999999999999987654443 34667
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 321 GVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 321 ~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
....+...|.+-||++.+.|.++.++|..+|+|+.+..||...|+.|.|.+|-+.|+|++.||.|.+|.+.
T Consensus 643 ~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 643 DLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred ceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECc
Confidence 78888899999999999999999999999999999999999999999999999999999999999999985
No 104
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=3.2e-30 Score=212.50 Aligned_cols=267 Identities=22% Similarity=0.363 Sum_probs=216.6
Q ss_pred cccCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCC-CceE-EEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccc
Q 016187 106 HKDSVSSLAFSM-DGQLLASGGLDGLVQIWDPSS-GNLK-CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA 182 (394)
Q Consensus 106 h~~~V~~v~~s~-~g~~l~t~s~d~~i~vwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~ 182 (394)
..+.|.+|+||| ...+|+.+|.|++||+|++.. |... .....+.++|.+++|+.+|..+++|+.|+.+++||+.+++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ 105 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence 578899999999 455677899999999999876 3332 2345688999999999999999999999999999999986
Q ss_pred eeeeecccCcCeEEEEECCCCC--eEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcE
Q 016187 183 YLNMFSGHGSSVTCGDFTPDGK--TICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260 (394)
Q Consensus 183 ~~~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i 260 (394)
...+..|..+|.++.|.+... .|+|||.|++||.||++....+..+.. .+.+.++. -...+++++..++.|
T Consensus 106 -~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L----PeRvYa~D--v~~pm~vVata~r~i 178 (347)
T KOG0647|consen 106 -VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL----PERVYAAD--VLYPMAVVATAERHI 178 (347)
T ss_pred -eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec----cceeeehh--ccCceeEEEecCCcE
Confidence 456678999999999987655 899999999999999998888777653 23444443 335688899999999
Q ss_pred EEEECCCCcEEEE-ecc-CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcce---eccCC---------CCEEEEE
Q 016187 261 HMVNITTGKVVSS-LVS-HTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRS---TCDHE---------DGVTCLM 326 (394)
Q Consensus 261 ~i~d~~~~~~~~~-~~~-h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~---~~~~~---------~~v~~~~ 326 (394)
.+++|+++..... +.. -.-.+.||++.++....|.|+..|++.|..+....+.. ..-|. ..|+.++
T Consensus 179 ~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~ 258 (347)
T KOG0647|consen 179 AVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIA 258 (347)
T ss_pred EEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceE
Confidence 9999987643221 111 23468899999998888999999999999887642211 11121 2478899
Q ss_pred EeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEE
Q 016187 327 WLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSV 379 (394)
Q Consensus 327 ~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~ 379 (394)
|+|....|+|++.||+..+||......+++...|..+|++-.|+.+|.++|-+
T Consensus 259 FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 259 FHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred eecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 99999999999999999999999888899999999999999999999998854
No 105
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=2.2e-31 Score=239.65 Aligned_cols=286 Identities=18% Similarity=0.337 Sum_probs=240.2
Q ss_pred cccCEE---EEEEc-CCCCEEEEEeCCCcEEEEeCCCCc------eEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEE
Q 016187 106 HKDSVS---SLAFS-MDGQLLASGGLDGLVQIWDPSSGN------LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWM 175 (394)
Q Consensus 106 h~~~V~---~v~~s-~~g~~l~t~s~d~~i~vwd~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~i 175 (394)
|...|. ++..+ |.+++|+|||.||.|++|+...-. ....++.|.+.|+.+....+++.|+++|.|.+|++
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~ 99 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV 99 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence 444555 55555 456789999999999999875432 35567788899999999999999999999999999
Q ss_pred EeCCcc--ceeeeecccCcCeEEEEE-CCCCCeEEEEeCCCcEEEEcCCCCce--EEEEc------CCCCcccCeEEEEE
Q 016187 176 WNADRA--AYLNMFSGHGSSVTCGDF-TPDGKTICTGSDDATLRVWNPKSGEN--IHVIR------GHPYHTEGLTCLTI 244 (394)
Q Consensus 176 w~~~~~--~~~~~~~~h~~~v~~~~~-~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~------~~~~~~~~i~~~~~ 244 (394)
|+.... -++..+..|.+.|.|+++ .++...+|||+-|+.|.+||+.++.. +..+. ....+..++.+++.
T Consensus 100 W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~ 179 (735)
T KOG0308|consen 100 WNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAM 179 (735)
T ss_pred eecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeec
Confidence 998776 567788899999999999 77888999999999999999998732 22211 11135678999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcce-eccCCCCEE
Q 016187 245 SADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRS-TCDHEDGVT 323 (394)
Q Consensus 245 ~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~v~ 323 (394)
.+.+..+++|+..+.|++||.++++.+..+++|++.|.++..+++|..++++|.||+|++||+....+.. ...|...|+
T Consensus 180 N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VW 259 (735)
T KOG0308|consen 180 NQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVW 259 (735)
T ss_pred CCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceE
Confidence 9999999999999999999999999999999999999999999999999999999999999998765544 456889999
Q ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 324 CLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 324 ~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
++..+|+-.++.+|+.||.|+.=|+++......+-....+|..+..+.+.+-+-++..|+.|+-|...
T Consensus 260 aL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 260 ALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred EEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCc
Confidence 99999999999999999999999998854444444456788888888766666788999999999764
No 106
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=7.6e-30 Score=210.28 Aligned_cols=271 Identities=20% Similarity=0.302 Sum_probs=215.9
Q ss_pred ccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCC-Ceee-EeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 016187 62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-GDWA-SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG 139 (394)
Q Consensus 62 ~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~-~~~~-~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~ 139 (394)
.-.+.|.+|+|||....+++.|+-|++||+|+++. +.+. .....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 34678999999997778888999999999999976 3433 345679999999999999999999999999999999999
Q ss_pred ceEEEEecCCCCEEEEEEcCCCC--EEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEE
Q 016187 140 NLKCTLEGPGGGVEWVSWHPRGH--IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 217 (394)
Q Consensus 140 ~~~~~~~~~~~~v~~~~~~~~~~--~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~v 217 (394)
+ ...+..|.++|..++|-+... .|++||.|.+|+.||.+....+..+.- ...+.++.. ...+++.+..++.|.+
T Consensus 105 Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv--~~pm~vVata~r~i~v 180 (347)
T KOG0647|consen 105 Q-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADV--LYPMAVVATAERHIAV 180 (347)
T ss_pred C-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cceeeehhc--cCceeEEEecCCcEEE
Confidence 5 456778999999999988665 899999999999999998877666542 334444433 3457888899999999
Q ss_pred EcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC--cEEEEeccCCC---------CEEEEEE
Q 016187 218 WNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG--KVVSSLVSHTD---------SIECIGF 286 (394)
Q Consensus 218 wd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~--~~~~~~~~h~~---------~i~~v~~ 286 (394)
|+++.+.........+ ..-.++|+++.++....+.|+-.|.+.+..+..+ +.-.+++.|.. .|++|+|
T Consensus 181 ynL~n~~te~k~~~Sp-Lk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~F 259 (347)
T KOG0647|consen 181 YNLENPPTEFKRIESP-LKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAF 259 (347)
T ss_pred EEcCCCcchhhhhcCc-ccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEe
Confidence 9998765432221111 2345889999999888899999999999988776 43445666652 4788999
Q ss_pred CCCCCeEEEEeCCCcEEEEeCCCCCcc-eeccCCCCEEEEEEeCCCCEEEEE
Q 016187 287 SRSSPWAATGSMDQKLIIWDLQHSLPR-STCDHEDGVTCLMWLGTSKYVVTG 337 (394)
Q Consensus 287 ~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~sg 337 (394)
+|....|++++.||+..+||-...... ....|..+|+|+.|+.+|.+++-+
T Consensus 260 hP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 260 HPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred ecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 999999999999999999997544322 235688899999999999887754
No 107
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.98 E-value=4.5e-30 Score=232.79 Aligned_cols=281 Identities=24% Similarity=0.406 Sum_probs=239.7
Q ss_pred CeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceE--EEEecCCCCEEE-EEEcCC-CCEEEEecCCCe
Q 016187 97 GDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK--CTLEGPGGGVEW-VSWHPR-GHIVLAGSEDST 172 (394)
Q Consensus 97 ~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~--~~~~~~~~~v~~-~~~~~~-~~~l~~~s~d~~ 172 (394)
-++...+.||...|..+++.+. ..++++|.|+++++|+-...+.+ +.+.+|.+-|.. ++|.+. +-.+++|+.|.+
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred ceeEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence 3556789999999999987664 47889999999999998766654 356777777776 888763 346999999999
Q ss_pred EEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEE
Q 016187 173 VWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL 252 (394)
Q Consensus 173 i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 252 (394)
+.+|...+..++..+.+|...|.|++...++. ++|||.|.++++|-. ++....+.+ |...|..+..-|++ .++
T Consensus 83 i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~g---H~asVWAv~~l~e~-~~v 155 (745)
T KOG0301|consen 83 IIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQG---HTASVWAVASLPEN-TYV 155 (745)
T ss_pred EEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCC---cchheeeeeecCCC-cEE
Confidence 99999999999999999999999998877776 999999999999975 455555554 56778888888888 789
Q ss_pred EEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCC
Q 016187 253 SGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSK 332 (394)
Q Consensus 253 ~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 332 (394)
+|+.|.+|++|.- ++.++++.+|++.|..+++-+++. ++|++.||.|++|++.........+|..-|.++....+++
T Consensus 156 TgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~ 232 (745)
T KOG0301|consen 156 TGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDG 232 (745)
T ss_pred eccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCC
Confidence 9999999999984 788999999999999999998754 7799999999999998777788889999999999888899
Q ss_pred EEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 333 YVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 333 ~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
.+++++.|++++||+.. +|.+.+.--.-.|+++.+=++|.. ++||.||.||||...
T Consensus 233 ~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDI-vvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 233 LIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDI-VVGGSDGRVRVFTVD 288 (745)
T ss_pred eEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCE-EEeccCceEEEEEec
Confidence 99999999999999865 777777755558999999888775 678899999999764
No 108
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.98 E-value=1e-30 Score=228.85 Aligned_cols=281 Identities=21% Similarity=0.367 Sum_probs=235.4
Q ss_pred eccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCe---eeEeecC--cccCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 016187 61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD---WASEIQG--HKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135 (394)
Q Consensus 61 ~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~---~~~~~~~--h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd 135 (394)
..|.+.|.+++.+. ..+.+.||| .+.|+|||+.... .+..|.. ....|+++.+.|||+.|++|+.-.++.|||
T Consensus 416 L~HGEvVcAvtIS~-~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWD 493 (705)
T KOG0639|consen 416 LAHGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWD 493 (705)
T ss_pred hccCcEEEEEEecC-CcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeee
Confidence 36888889999886 356677765 5899999986532 3333432 346799999999999999999999999999
Q ss_pred CCCCce--EEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCC
Q 016187 136 PSSGNL--KCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA 213 (394)
Q Consensus 136 ~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg 213 (394)
+..... ...+......+..++.+|+.++.+++..||.|.|||+.+...++.++||.+.+.|+.++++|..|.+|+-|.
T Consensus 494 LAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDn 573 (705)
T KOG0639|consen 494 LAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDN 573 (705)
T ss_pred ccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCcc
Confidence 976543 333444445678899999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeE
Q 016187 214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWA 293 (394)
Q Consensus 214 ~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l 293 (394)
+||-||++++..+.. |.+ ...|.++..+|++.++++|.+++.+.+...... ....+.-|...|.++.|.+.|+|+
T Consensus 574 tvRcWDlregrqlqq---hdF-~SQIfSLg~cP~~dWlavGMens~vevlh~skp-~kyqlhlheScVLSlKFa~cGkwf 648 (705)
T KOG0639|consen 574 TVRCWDLREGRQLQQ---HDF-SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP-EKYQLHLHESCVLSLKFAYCGKWF 648 (705)
T ss_pred ceeehhhhhhhhhhh---hhh-hhhheecccCCCccceeeecccCcEEEEecCCc-cceeecccccEEEEEEecccCcee
Confidence 999999998876533 322 456999999999999999999999999886544 344566689999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 016187 294 ATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDS 348 (394)
Q Consensus 294 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~ 348 (394)
++.+.|+.+..|.+-.............|.++..+.+.+||+||+.|.+..+|.+
T Consensus 649 vStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 649 VSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 9999999999999876655555566778999999999999999999999888864
No 109
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.98 E-value=1.3e-28 Score=215.85 Aligned_cols=317 Identities=19% Similarity=0.368 Sum_probs=250.6
Q ss_pred CCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeE---eecCc-ccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 016187 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWAS---EIQGH-KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG 139 (394)
Q Consensus 64 ~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~---~~~~h-~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~ 139 (394)
.+.|....|+|.+.++++|.|. +.+.+|+.+.+.+.. .++.+ +..|.||+|.++|.. +||..+|.|.||+..+.
T Consensus 200 ne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdv-iTgDS~G~i~Iw~~~~~ 277 (626)
T KOG2106|consen 200 NEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDV-ITGDSGGNILIWSKGTN 277 (626)
T ss_pred cceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCE-EeecCCceEEEEeCCCc
Confidence 4567888999999999999865 889999998876554 34443 367999999999975 58999999999999877
Q ss_pred ceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccc-------------------------------------
Q 016187 140 NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA------------------------------------- 182 (394)
Q Consensus 140 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~------------------------------------- 182 (394)
+.......|.+.|.+++...+|.+| +|+.|..|..||-.-.+
T Consensus 278 ~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~ 356 (626)
T KOG2106|consen 278 RISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTL 356 (626)
T ss_pred eEEeEeeecCCceEEEEEecCccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeee
Confidence 7776666899999999999998755 59999999999832100
Q ss_pred ---eeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCc
Q 016187 183 ---YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGS 259 (394)
Q Consensus 183 ---~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~ 259 (394)
......+|......++.+|+.+++++++.|+.+++|+ ..+...... -.++..|+.|+|.| .++.|...|.
T Consensus 357 ~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~----~~d~~~~~~fhpsg-~va~Gt~~G~ 429 (626)
T KOG2106|consen 357 ENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI----IEDPAECADFHPSG-VVAVGTATGR 429 (626)
T ss_pred cCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE----ecCceeEeeccCcc-eEEEeeccce
Confidence 0112357888888999999999999999999999999 333332222 34578899999999 9999999999
Q ss_pred EEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcce---eccCCCCEEEEEEeCCCCEEEE
Q 016187 260 VHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRS---TCDHEDGVTCLMWLGTSKYVVT 336 (394)
Q Consensus 260 i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~s 336 (394)
..+.|.++...+..-.. .+++++++|+|+|.+||.|+.|+.|.||.+....... -.-+..+++.+.|++|+++|.+
T Consensus 430 w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~ 508 (626)
T KOG2106|consen 430 WFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVS 508 (626)
T ss_pred EEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEe
Confidence 99999998666554444 8899999999999999999999999999986542211 1123478999999999999999
Q ss_pred EeCCCeEEEEECCCCeEEE--------------Ee----ecccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 337 GCVDGKVRVWDSLSGDCVR--------------TF----SGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 337 g~~dg~i~iwd~~~~~~~~--------------~~----~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
-+.|-.|..|.....+.+. -| ..|+..|+.++-+..++++|+|.+.|+|++|.-.
T Consensus 509 ~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yP 581 (626)
T KOG2106|consen 509 NSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYP 581 (626)
T ss_pred ccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccc
Confidence 9999999999432221111 11 1345567888888889999999999999999743
No 110
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.3e-29 Score=208.64 Aligned_cols=242 Identities=21% Similarity=0.360 Sum_probs=203.0
Q ss_pred EEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCC--eEEEEeCCCcEEEEcC
Q 016187 143 CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK--TICTGSDDATLRVWNP 220 (394)
Q Consensus 143 ~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~vwd~ 220 (394)
..+..|.+++++++.+ +.++++|+.|-+|+|||+.+.+.+..+..|.+.|+++.|.+.-. .|++|+.||.|.+|+.
T Consensus 37 F~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~ 114 (362)
T KOG0294|consen 37 FAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRV 114 (362)
T ss_pred ccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEc
Confidence 4456788999998865 78999999999999999999988888889999999999998654 8999999999999999
Q ss_pred CCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCC
Q 016187 221 KSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQ 300 (394)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg 300 (394)
..-..+..+++| ...|+.++++|.+++.++-+.|+.+++||+-.|+.-..+.- ....+-|.|+|.|.+++.++.+
T Consensus 115 ~~W~~~~slK~H---~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~- 189 (362)
T KOG0294|consen 115 GSWELLKSLKAH---KGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRN- 189 (362)
T ss_pred CCeEEeeeeccc---ccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEecc-
Confidence 888888888864 55699999999999999999999999999998875444322 2223348999999988877755
Q ss_pred cEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEE--ccCCCEEEE
Q 016187 301 KLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISV--SAHQDFLVS 378 (394)
Q Consensus 301 ~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~~~l~s 378 (394)
.|-+|.+...........+..+.|+.|. ++.+|++|..|+.|++||.....++..+.+|...|.++.+ .|++.||+|
T Consensus 190 ~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvT 268 (362)
T KOG0294|consen 190 KIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVT 268 (362)
T ss_pred EEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEE
Confidence 5889988765443334444557777765 5678999999999999999999999999999999999974 467889999
Q ss_pred EeCCCcEEEEeccC
Q 016187 379 VSLDGTARVFEIAD 392 (394)
Q Consensus 379 ~s~dg~i~iw~~~~ 392 (394)
+|.||.|++||++.
T Consensus 269 aSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 269 ASSDGFIKVWDIDM 282 (362)
T ss_pred eccCceEEEEEccc
Confidence 99999999999875
No 111
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=2e-29 Score=208.58 Aligned_cols=267 Identities=17% Similarity=0.291 Sum_probs=216.9
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceee
Q 016187 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN 185 (394)
Q Consensus 106 h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~ 185 (394)
..+.|++|.|+|.++.|+.++.||++++|+......+..+. +..++.+++|.+ ...+++|+.||.|+.+|+.++....
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~ 89 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQ 89 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCccee
Confidence 36889999999999999999999999999998776555544 778999999997 4568999999999999999887543
Q ss_pred eecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 016187 186 MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI 265 (394)
Q Consensus 186 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~ 265 (394)
+..|..++.|+.+.+....+++|+.|++|++||++.......+. ....|.|+... +..|++|+.+..+.+||+
T Consensus 90 -igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d----~~kkVy~~~v~--g~~LvVg~~~r~v~iyDL 162 (323)
T KOG1036|consen 90 -IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD----QGKKVYCMDVS--GNRLVVGTSDRKVLIYDL 162 (323)
T ss_pred -eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc----cCceEEEEecc--CCEEEEeecCceEEEEEc
Confidence 45699999999999988899999999999999998643333322 23467776654 778999999999999999
Q ss_pred CCCcEEEEec--cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC----Ccce-eccC---------CCCEEEEEEeC
Q 016187 266 TTGKVVSSLV--SHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHS----LPRS-TCDH---------EDGVTCLMWLG 329 (394)
Q Consensus 266 ~~~~~~~~~~--~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~----~~~~-~~~~---------~~~v~~~~~~~ 329 (394)
++.....+.. .-.-.+.||++-|++.=.+.+|.||++.+=.+... ..+. +.-| -.+|++++|+|
T Consensus 163 Rn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp 242 (323)
T KOG1036|consen 163 RNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP 242 (323)
T ss_pred ccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc
Confidence 9876443221 23457899999998888899999999987555432 1110 1111 13689999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeC
Q 016187 330 TSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSL 381 (394)
Q Consensus 330 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~ 381 (394)
-.+.++||+.||.|.+||..+.+.++.|......|.+++|+.+|..||.++.
T Consensus 243 ~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 243 IHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 9999999999999999999999999999988888999999999999998875
No 112
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.97 E-value=3e-29 Score=206.14 Aligned_cols=300 Identities=18% Similarity=0.344 Sum_probs=233.5
Q ss_pred eeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCe------ee----E-----eecCcccCEEEEEEcC-CCC
Q 016187 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD------WA----S-----EIQGHKDSVSSLAFSM-DGQ 120 (394)
Q Consensus 57 ~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~------~~----~-----~~~~h~~~V~~v~~s~-~g~ 120 (394)
..+...|.+.|+++...|..++++.+|+.|+.+.+||++... ++ . .-.+|+-.|.++.|-| |..
T Consensus 36 ~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG 115 (397)
T KOG4283|consen 36 KDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG 115 (397)
T ss_pred cceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc
Confidence 344567999999999999999999999999999999986532 11 1 1146888999999998 456
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCC---CEEEEecCCCeEEEEeCCccceeeeecccCcCeEEE
Q 016187 121 LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRG---HIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCG 197 (394)
Q Consensus 121 ~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~ 197 (394)
.+.++|.|.+++|||.++-+....++. .+.|..-+++|-. .++++|..+-.|++.|+.++.+...++||.+.|.++
T Consensus 116 mFtssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV 194 (397)
T KOG4283|consen 116 MFTSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAV 194 (397)
T ss_pred eeecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEE
Confidence 888999999999999998887766653 4568888888843 367888889999999999999999999999999999
Q ss_pred EECCCCCe-EEEEeCCCcEEEEcCCCC-ceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 016187 198 DFTPDGKT-ICTGSDDATLRVWNPKSG-ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV 275 (394)
Q Consensus 198 ~~~~~~~~-l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~ 275 (394)
.|+|...+ |++|+.||.||+||++.. .+...+..|. + .....+++-.
T Consensus 195 ~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn--------------~-----------------k~~p~~~~n~ 243 (397)
T KOG4283|consen 195 EWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHN--------------T-----------------KRPPILKTNT 243 (397)
T ss_pred EeccCceeEEEecCCCceEEEEEeecccceeEEeeccc--------------C-----------------ccCccccccc
Confidence 99998776 689999999999998743 2222222110 0 0112233345
Q ss_pred cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcc----eeccCCC----CEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 016187 276 SHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPR----STCDHED----GVTCLMWLGTSKYVVTGCVDGKVRVWD 347 (394)
Q Consensus 276 ~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~----~~~~~~~----~v~~~~~~~~~~~l~sg~~dg~i~iwd 347 (394)
+|.+.++.++|+.++.++++++.|.++++|+....... ....|+. .+. +. +.+...++---.++.+.+++
T Consensus 244 ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~ 321 (397)
T KOG4283|consen 244 AHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLN 321 (397)
T ss_pred cccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEE
Confidence 68999999999999999999999999999998654211 1111211 121 22 33344444445679999999
Q ss_pred CCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEec
Q 016187 348 SLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEI 390 (394)
Q Consensus 348 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~ 390 (394)
+..+..++.+.+|...|.+.++.|+-+...+|..|+.|..|-.
T Consensus 322 ~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 322 LLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ccCceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 9999999999999999999999999999999999999999965
No 113
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.97 E-value=4.5e-29 Score=226.27 Aligned_cols=325 Identities=22% Similarity=0.354 Sum_probs=254.8
Q ss_pred EEEEEcC-CCCcEEEEecCCCeEEEEEcCCCe--eeEeecCcccCEEEEEEcCCCC---EEEEEeCCCcEEEEeCCCCc-
Q 016187 68 YSVACSP-TDATLVATGGGDDKGFFWRINQGD--WASEIQGHKDSVSSLAFSMDGQ---LLASGGLDGLVQIWDPSSGN- 140 (394)
Q Consensus 68 ~~~~~~p-~~~~~lasg~~d~~v~~w~~~~~~--~~~~~~~h~~~V~~v~~s~~g~---~l~t~s~d~~i~vwd~~~~~- 140 (394)
.|+++.| .+..++|-|+.+..+.++.-..++ ....+.||.+.|++++|...+. +||++|.|..||||.+.-+.
T Consensus 149 LcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~ 228 (764)
T KOG1063|consen 149 LCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDD 228 (764)
T ss_pred HHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCC
Confidence 3455566 344577888888888888866544 4567899999999999987554 78999999999999753221
Q ss_pred --------------------eEE----------EEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccc-------e
Q 016187 141 --------------------LKC----------TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-------Y 183 (394)
Q Consensus 141 --------------------~~~----------~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~-------~ 183 (394)
... .+.+|.+-|.++.|+|.+..|+++|.|.++.+|...+.. .
T Consensus 229 ~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vR 308 (764)
T KOG1063|consen 229 EDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVR 308 (764)
T ss_pred ccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEE
Confidence 010 123899999999999999999999999999999876542 1
Q ss_pred eeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 016187 184 LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMV 263 (394)
Q Consensus 184 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~ 263 (394)
+-.+.|.......+.|+|+++.+++-+..|..++|..+.............|..+|+.++|+|.|.++++.+.|.+-|+|
T Consensus 309 lGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlF 388 (764)
T KOG1063|consen 309 LGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLF 388 (764)
T ss_pred eecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeee
Confidence 22233445567888999999999999999999999854433333333445688899999999999999999999999998
Q ss_pred ECCCC----cEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC-----------------------------
Q 016187 264 NITTG----KVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHS----------------------------- 310 (394)
Q Consensus 264 d~~~~----~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~----------------------------- 310 (394)
-.-.. ..+..-+-|.-.+.|++|-+....+++|.....+++|+....
T Consensus 389 a~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLG 468 (764)
T KOG1063|consen 389 ARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALG 468 (764)
T ss_pred cccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccccccccccc
Confidence 65411 123334557788999999987677888888888899874200
Q ss_pred ------C------------------------------------------cceeccCCCCEEEEEEeCCCCEEEEEeCCC-
Q 016187 311 ------L------------------------------------------PRSTCDHEDGVTCLMWLGTSKYVVTGCVDG- 341 (394)
Q Consensus 311 ------~------------------------------------------~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg- 341 (394)
. ..+..+|...|.+++.+|+++++|+++...
T Consensus 469 LSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~ 548 (764)
T KOG1063|consen 469 LSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSL 548 (764)
T ss_pred ccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCC
Confidence 0 011235788899999999999999998654
Q ss_pred ----eEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 342 ----KVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 342 ----~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
.|++|+..+...++.+.+|.-.|+.|+||||+++|+++|.|+++.+|+..+
T Consensus 549 ~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~ 603 (764)
T KOG1063|consen 549 KEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQE 603 (764)
T ss_pred ccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeec
Confidence 599999999999999999999999999999999999999999999998753
No 114
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.4e-29 Score=201.54 Aligned_cols=245 Identities=22% Similarity=0.328 Sum_probs=201.7
Q ss_pred ecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC---ceEEEEecCCCCEEEEEEcC--CCCEEEEecCCCeEEEEe
Q 016187 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG---NLKCTLEGPGGGVEWVSWHP--RGHIVLAGSEDSTVWMWN 177 (394)
Q Consensus 103 ~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~l~~~s~d~~i~iw~ 177 (394)
...|.+.|..+...--|++|||++.|++|||+...+. +++.++.+|.++|..++|.. .|.+|++++.||.+.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 4579999999999889999999999999999998754 46788999999999999976 689999999999999999
Q ss_pred CCccce--eeeecccCcCeEEEEECCC--CCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCC---C--
Q 016187 178 ADRAAY--LNMFSGHGSSVTCGDFTPD--GKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD---S-- 248 (394)
Q Consensus 178 ~~~~~~--~~~~~~h~~~v~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~-- 248 (394)
-++++- ...+..|...|++++|.|. |-.|++++.||.|.|.+.+.......-+-...|.-+++++++.|. |
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 887743 3456789999999999985 678999999999999987654111111222357778999999886 4
Q ss_pred ---------CEEEEEeCCCcEEEEECCCCc--EEEEeccCCCCEEEEEECCCC----CeEEEEeCCCcEEEEeCCCCCc-
Q 016187 249 ---------TLALSGSKDGSVHMVNITTGK--VVSSLVSHTDSIECIGFSRSS----PWAATGSMDQKLIIWDLQHSLP- 312 (394)
Q Consensus 249 ---------~~l~~g~~dg~i~i~d~~~~~--~~~~~~~h~~~i~~v~~~~~~----~~l~s~s~dg~i~iwd~~~~~~- 312 (394)
+.|++|+.|..++||+..+++ .-.++.+|.+.|..++|.|.- .++|++|.||++.||.......
T Consensus 167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~ 246 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP 246 (299)
T ss_pred cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence 569999999999999998763 334588999999999999974 4799999999999998753211
Q ss_pred ---ceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 016187 313 ---RSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWD 347 (394)
Q Consensus 313 ---~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd 347 (394)
.........+..+.|+..|+.|+.++.|.+|++|-
T Consensus 247 wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 247 WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 11223456799999999999999999999999995
No 115
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=8.9e-29 Score=215.05 Aligned_cols=292 Identities=23% Similarity=0.396 Sum_probs=230.4
Q ss_pred cEEEEecCCCe-EEEEEcCCCeeeEeecCc-ccCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceEEEEecCCCCEEE
Q 016187 78 TLVATGGGDDK-GFFWRINQGDWASEIQGH-KDSVSSLAFSMDGQLLASGG-LDGLVQIWDPSSGNLKCTLEGPGGGVEW 154 (394)
Q Consensus 78 ~~lasg~~d~~-v~~w~~~~~~~~~~~~~h-~~~V~~v~~s~~g~~l~t~s-~d~~i~vwd~~~~~~~~~~~~~~~~v~~ 154 (394)
.++.+++.|-. +.+||+.+|....++++- ...-.++..- .+.+++++. .-..|.+|.+..........--.++|.+
T Consensus 8 ~~~sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~a 86 (476)
T KOG0646|consen 8 TVCSSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHA 86 (476)
T ss_pred EEEeccCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceee
Confidence 34555566655 889999999888777764 1111111111 235666664 3457889998765544322334578999
Q ss_pred EEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCC---------Cce
Q 016187 155 VSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS---------GEN 225 (394)
Q Consensus 155 ~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~---------~~~ 225 (394)
++-+|.|.+|+.|+..+.|++|.+.++..+..+.+|-..|+|+.|+-||.+|+||+.||.|.+|.+.. -+.
T Consensus 87 l~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p 166 (476)
T KOG0646|consen 87 LASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKP 166 (476)
T ss_pred eecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999998632 123
Q ss_pred EEEEcCCCCcccCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEE
Q 016187 226 IHVIRGHPYHTEGLTCLTISAD--STLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLI 303 (394)
Q Consensus 226 ~~~~~~~~~~~~~i~~~~~~~~--~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~ 303 (394)
++.+.. |.-+|+.+.+.+. ..++++++.|.++++||+..+.++.++. ....+.+++++|....+..|+.+|.|.
T Consensus 167 ~~~f~~---HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~ 242 (476)
T KOG0646|consen 167 LHIFSD---HTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIF 242 (476)
T ss_pred eeeecc---CcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEE
Confidence 334433 5667888877764 4689999999999999999999888775 457899999999999999999999999
Q ss_pred EEeCCCCC-----------------cceeccCCC--CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCce
Q 016187 304 IWDLQHSL-----------------PRSTCDHED--GVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAI 364 (394)
Q Consensus 304 iwd~~~~~-----------------~~~~~~~~~--~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v 364 (394)
+.++.... .....+|.. .|+|++.+.|+..|++|+.||+|+|||+.+.++++++.--.++|
T Consensus 243 ~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpV 322 (476)
T KOG0646|consen 243 QNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPV 322 (476)
T ss_pred eeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhcccc
Confidence 88764321 122346777 89999999999999999999999999999999999888668899
Q ss_pred eEEEEccCCC
Q 016187 365 QAISVSAHQD 374 (394)
Q Consensus 365 ~~l~~~~~~~ 374 (394)
+.+.+.|-.+
T Consensus 323 tnL~i~~~~~ 332 (476)
T KOG0646|consen 323 TNLQINPLER 332 (476)
T ss_pred ceeEeecccc
Confidence 9999965433
No 116
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=2.6e-29 Score=215.10 Aligned_cols=245 Identities=21% Similarity=0.352 Sum_probs=209.3
Q ss_pred ceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 016187 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135 (394)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd 135 (394)
...++.|-.++|+++.|.+.+...| +.+.|+.+++|++...+...+|.||++.|+++.|......+++|+.|.+|++||
T Consensus 211 ~~~tLaGs~g~it~~d~d~~~~~~i-Aas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WD 289 (459)
T KOG0288|consen 211 LISTLAGSLGNITSIDFDSDNKHVI-AASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWD 289 (459)
T ss_pred hhhhhhccCCCcceeeecCCCceEE-eecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhh
Confidence 4566778888999999999766555 468999999999999999999999999999999998877799999999999999
Q ss_pred CCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcE
Q 016187 136 PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATL 215 (394)
Q Consensus 136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i 215 (394)
+....+..++- +...+..+..+ ...+++|-.|+.|+.||.+...+......++ .|+++..++++..|++++.|.++
T Consensus 290 l~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl 365 (459)
T KOG0288|consen 290 LQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTL 365 (459)
T ss_pred hhhhheecccc-ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCce
Confidence 98877665432 33445555555 4567888899999999999998888887776 89999999999999999999999
Q ss_pred EEEcCCCCceEEEEcCCCC-cccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCC--CEEEEEECCCCCe
Q 016187 216 RVWNPKSGENIHVIRGHPY-HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTD--SIECIGFSRSSPW 292 (394)
Q Consensus 216 ~vwd~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~--~i~~v~~~~~~~~ 292 (394)
.+.|+++.+....+....+ .....+.+.|||++.|+++|+.||.|+||++.++++.+.+..... .|+++.|+|.|..
T Consensus 366 ~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~ 445 (459)
T KOG0288|consen 366 KVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSG 445 (459)
T ss_pred eeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCch
Confidence 9999999887776654322 123478899999999999999999999999999999888766544 4999999999999
Q ss_pred EEEEeCCCcEEEE
Q 016187 293 AATGSMDQKLIIW 305 (394)
Q Consensus 293 l~s~s~dg~i~iw 305 (394)
|++++.++.+.+|
T Consensus 446 Llsadk~~~v~lW 458 (459)
T KOG0288|consen 446 LLSADKQKAVTLW 458 (459)
T ss_pred hhcccCCcceEec
Confidence 9999999999998
No 117
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=6.5e-27 Score=185.68 Aligned_cols=281 Identities=20% Similarity=0.348 Sum_probs=225.6
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEeC------CCCc--------eEEE-EecCCCCEEEEEEcCCCCEEEEecCC
Q 016187 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDP------SSGN--------LKCT-LEGPGGGVEWVSWHPRGHIVLAGSED 170 (394)
Q Consensus 106 h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~------~~~~--------~~~~-~~~~~~~v~~~~~~~~~~~l~~~s~d 170 (394)
....|++++|+|.|.+.+.|+...+++|.-. ..+. .+++ -+.|.+.|.+.+|+|.|.++++|+.|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 4567999999999999999999999998742 1111 1121 24578899999999999999999999
Q ss_pred CeEEEEeCCccce-----eeeecccCcCeEEEEECCC----CCeEEEEe-CCCcEEEEcCCCCceEEEEcCCCCcccCeE
Q 016187 171 STVWMWNADRAAY-----LNMFSGHGSSVTCGDFTPD----GKTICTGS-DDATLRVWNPKSGENIHVIRGHPYHTEGLT 240 (394)
Q Consensus 171 ~~i~iw~~~~~~~-----~~~~~~h~~~v~~~~~~~~----~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~ 240 (394)
.+|++...+...+ -..+.-|.+.|..++|..+ +..|++++ .|..|.+-|..+|+..+.+.+|.. .|.
T Consensus 111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtg---hil 187 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTG---HIL 187 (350)
T ss_pred ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcc---cEE
Confidence 9999986654322 2346678999999999643 45677665 466777788888998888877544 455
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEecc--C-----CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcc
Q 016187 241 CLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS--H-----TDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPR 313 (394)
Q Consensus 241 ~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~--h-----~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 313 (394)
.+ ++-++-++++|+.|.+|++||++-..++.++.. | ...|.+++..|.+++|++|-.|....+||++...+.
T Consensus 188 al-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~i 266 (350)
T KOG0641|consen 188 AL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMI 266 (350)
T ss_pred EE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCcee
Confidence 44 445688999999999999999998888777642 2 356899999999999999999999999999876544
Q ss_pred -eeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeE-----EEEeecccCceeEEEEccCCCEEEEEeCCCcEEE
Q 016187 314 -STCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDC-----VRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARV 387 (394)
Q Consensus 314 -~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~-----~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~i 387 (394)
....|...|.|+.|+|..-|+++++.|.+|++=|+. |.+ +-....|...+..+.|+|..--++|.|.|.++.+
T Consensus 267 q~f~phsadir~vrfsp~a~yllt~syd~~ikltdlq-gdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tl 345 (350)
T KOG0641|consen 267 QRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ-GDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATL 345 (350)
T ss_pred eeeCCCccceeEEEeCCCceEEEEecccceEEEeecc-cchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEE
Confidence 456788999999999999999999999999999875 332 2234578888889999999999999999999999
Q ss_pred Eecc
Q 016187 388 FEIA 391 (394)
Q Consensus 388 w~~~ 391 (394)
|-+.
T Consensus 346 wa~~ 349 (350)
T KOG0641|consen 346 WALN 349 (350)
T ss_pred eccC
Confidence 9764
No 118
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.2e-28 Score=213.93 Aligned_cols=264 Identities=24% Similarity=0.369 Sum_probs=218.5
Q ss_pred eEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEE-EEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeC
Q 016187 100 ASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC-TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178 (394)
Q Consensus 100 ~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~ 178 (394)
...+..|.-+|.+|+++|++.+.++++.+++|.-|++.+|+... .++.. .|....+.|
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~--ev~k~~~~~------------------- 193 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD--EVLKSHGNP------------------- 193 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccc--hhhhhccCC-------------------
Confidence 34567899999999999999999999999999999999887542 22211 110001111
Q ss_pred CccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCC
Q 016187 179 DRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG 258 (394)
Q Consensus 179 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg 258 (394)
.+. .. .+|...+.+++.++||++|++|+.|..|.||+..+.+.++.+++ |...|.+++|-....-+++++.|+
T Consensus 194 --~k~-~r-~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~g---hr~~V~~L~fr~gt~~lys~s~Dr 266 (479)
T KOG0299|consen 194 --LKE-SR-KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKG---HRGAVSSLAFRKGTSELYSASADR 266 (479)
T ss_pred --CCc-cc-ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccc---cccceeeeeeecCccceeeeecCC
Confidence 000 11 37999999999999999999999999999999999998888776 577899999998888999999999
Q ss_pred cEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEe
Q 016187 259 SVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGC 338 (394)
Q Consensus 259 ~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~ 338 (394)
++++|++.....+.++.+|.+.|.++......+.+-.|+.|.++++|++.........++...+-|++|-.+ ..+++|+
T Consensus 267 svkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGS 345 (479)
T KOG0299|consen 267 SVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGS 345 (479)
T ss_pred ceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeecc
Confidence 999999999989999999999999998887777777778999999999966555566778888999998755 5788999
Q ss_pred CCCeEEEEECCCCeEEEEee-ccc-----------CceeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 339 VDGKVRVWDSLSGDCVRTFS-GHR-----------DAIQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 339 ~dg~i~iwd~~~~~~~~~~~-~h~-----------~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
.+|.|.+|++...+++.+.. .|. ..|++|+..|..+++||||.+|.||+|.+.+
T Consensus 346 dnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~ 411 (479)
T KOG0299|consen 346 DNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIED 411 (479)
T ss_pred CCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecC
Confidence 99999999999888877543 231 2689999999999999999999999999864
No 119
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.97 E-value=7.8e-29 Score=217.08 Aligned_cols=281 Identities=21% Similarity=0.369 Sum_probs=237.8
Q ss_pred CcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc---eEEEE--ecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCC
Q 016187 105 GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN---LKCTL--EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179 (394)
Q Consensus 105 ~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~---~~~~~--~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~ 179 (394)
.|.+-|-++.+|...++++||+. |.|+|||+.... .+..+ ......++++.++|+++.|++|+.-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 48888999999999999999985 679999986542 12222 2345678999999999999999999999999987
Q ss_pred ccc--eeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCC
Q 016187 180 RAA--YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD 257 (394)
Q Consensus 180 ~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~d 257 (394)
... ....+......+..++.+||.+..++++.||.|+|||+.+...+..+.+ |.++..|+.++++|..|.+|+.|
T Consensus 496 apTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqG---htDGascIdis~dGtklWTGGlD 572 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQG---HTDGASCIDISKDGTKLWTGGLD 572 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccC---CCCCceeEEecCCCceeecCCCc
Confidence 543 2223333345567789999999999999999999999998777766665 67899999999999999999999
Q ss_pred CcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEE
Q 016187 258 GSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTG 337 (394)
Q Consensus 258 g~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg 337 (394)
.+++-||++.++.+.... ....|.++..+|++.|||.|=..+.+.+-............|+..|.++.|.+-|+++++.
T Consensus 573 ntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvSt 651 (705)
T KOG0639|consen 573 NTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVST 651 (705)
T ss_pred cceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeec
Confidence 999999999987665432 3578999999999999999999999999887766666667789999999999999999999
Q ss_pred eCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 338 CVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 338 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
+.|..+..|....|..+...+. ..+|.+..++.|.+||+|||.|....+|.+.
T Consensus 652 GkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~ddkyIVTGSGdkkATVYeV~ 704 (705)
T KOG0639|consen 652 GKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISFDDKYIVTGSGDKKATVYEVI 704 (705)
T ss_pred CchhhhhhccCccccceeeccc-cCcceeeeeccCceEEEecCCCcceEEEEEe
Confidence 9999999999998988877764 5689999999999999999999999999864
No 120
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=3.6e-28 Score=217.11 Aligned_cols=319 Identities=18% Similarity=0.286 Sum_probs=246.1
Q ss_pred CCCCCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCE-EEEEeCCC
Q 016187 51 EQPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQL-LASGGLDG 129 (394)
Q Consensus 51 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~-l~t~s~d~ 129 (394)
..|.....+|.||++.|.+|...| .+..||+|+.||+++||.+.++.++.++. -.+.|.||+|+|.+.. ++.++...
T Consensus 387 PFPt~~~lvyrGHtg~Vr~iSvdp-~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~ 464 (733)
T KOG0650|consen 387 PFPTRCALVYRGHTGLVRSISVDP-SGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGE 464 (733)
T ss_pred CCcceeeeeEeccCCeEEEEEecC-CcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecC
Confidence 356667888999999999999999 56799999999999999999999998775 3457999999998763 33334445
Q ss_pred cEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEe----cCCCeEEEEeCCc----cceeeeecccCcCeEEEEECC
Q 016187 130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAG----SEDSTVWMWNADR----AAYLNMFSGHGSSVTCGDFTP 201 (394)
Q Consensus 130 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----s~d~~i~iw~~~~----~~~~~~~~~h~~~v~~~~~~~ 201 (394)
.+.|-+..-|..+.... ....|+++ ..+..+..|.-.. ..-++..-.|..+|..+.|+.
T Consensus 465 ~~~ivnp~~G~~~e~~~-------------t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr 531 (733)
T KOG0650|consen 465 CVLIVNPIFGDRLEVGP-------------TKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR 531 (733)
T ss_pred ceEEeCccccchhhhcc-------------hhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec
Confidence 57777766553221100 00111121 2345677786542 122345556889999999999
Q ss_pred CCCeEEEEeCC---CcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCC
Q 016187 202 DGKTICTGSDD---ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHT 278 (394)
Q Consensus 202 ~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~ 278 (394)
.|.||++...+ ..|.|+++........++. ..+.+.++.|+|...++++++. ..|++||+..+.+++.+....
T Consensus 532 kGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~k---skG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~ 607 (733)
T KOG0650|consen 532 KGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRK---SKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGS 607 (733)
T ss_pred CCceEEEeccCCCcceEEEEecccccccCchhh---cCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCC
Confidence 99999988664 5688999876654433322 2345788999999999888865 679999999988888887788
Q ss_pred CCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC--CcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC-------
Q 016187 279 DSIECIGFSRSSPWAATGSMDQKLIIWDLQHS--LPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSL------- 349 (394)
Q Consensus 279 ~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~------- 349 (394)
..|..++++|.|.-|+.++.|+++..||+.-. -......|...++.++|++.-.++++|+.||++.||...
T Consensus 608 kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~q 687 (733)
T KOG0650|consen 608 KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQ 687 (733)
T ss_pred eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhc
Confidence 89999999999999999999999999998644 233445688999999999999999999999999999532
Q ss_pred C--CeEEEEeecccCc----eeEEEEccCCCEEEEEeCCCcEEEE
Q 016187 350 S--GDCVRTFSGHRDA----IQAISVSAHQDFLVSVSLDGTARVF 388 (394)
Q Consensus 350 ~--~~~~~~~~~h~~~----v~~l~~~~~~~~l~s~s~dg~i~iw 388 (394)
+ -..++.+.||... |....|+|...+|+|++.||+||+|
T Consensus 688 npliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 688 NPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred CCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 1 1346778898755 8889999999999999999999998
No 121
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.96 E-value=2.4e-26 Score=206.22 Aligned_cols=268 Identities=12% Similarity=0.169 Sum_probs=205.2
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEE-EEecCCCeEEEEeCCccceeeeecccCcCeEEE
Q 016187 119 GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIV-LAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCG 197 (394)
Q Consensus 119 g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~ 197 (394)
+..+++++.|+.|++||+.+++.+..+..+. .+..++|+|++..+ ++++.++.+++|+..+++....+..+.. +..+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~ 78 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELF 78 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEE
Confidence 3578899999999999999998888877554 46779999999866 5677899999999998877766655443 4678
Q ss_pred EECCCCCeEEE-EeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCC-cEEEEECCCCcEEEEec
Q 016187 198 DFTPDGKTICT-GSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG-SVHMVNITTGKVVSSLV 275 (394)
Q Consensus 198 ~~~~~~~~l~s-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg-~i~i~d~~~~~~~~~~~ 275 (394)
+|+|+++.+++ ++.++.|++||+.+++.+..+.. ...+..+.++|++.++++++.++ .+.+||..+++.+..+.
T Consensus 79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~----~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~ 154 (300)
T TIGR03866 79 ALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV----GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL 154 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC----CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE
Confidence 89999997755 45689999999998776665542 12356789999999999988775 46778998887766543
Q ss_pred cCCCCEEEEEECCCCCeEE-EEeCCCcEEEEeCCCCCcceecc------CCC--CEEEEEEeCCCCEEEE-EeCCCeEEE
Q 016187 276 SHTDSIECIGFSRSSPWAA-TGSMDQKLIIWDLQHSLPRSTCD------HED--GVTCLMWLGTSKYVVT-GCVDGKVRV 345 (394)
Q Consensus 276 ~h~~~i~~v~~~~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~------~~~--~v~~~~~~~~~~~l~s-g~~dg~i~i 345 (394)
. ...+.+++|+|++.+++ ++..++.|++||+.+........ +.. ....++|+|++++++. .+.++.|.+
T Consensus 155 ~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v 233 (300)
T TIGR03866 155 V-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAV 233 (300)
T ss_pred c-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEE
Confidence 2 33457899999999875 44569999999998654322211 111 2346789999998654 355778999
Q ss_pred EECCCCeEEEEeecccCceeEEEEccCCCEEEEE-eCCCcEEEEeccCCC
Q 016187 346 WDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSV-SLDGTARVFEIADFK 394 (394)
Q Consensus 346 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-s~dg~i~iw~~~~~~ 394 (394)
||..+++.+..+. +...+.+++|+|++++|+++ +.+|.|++||+...+
T Consensus 234 ~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 234 VDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred EECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 9999998876654 34578999999999999876 569999999988653
No 122
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=4.5e-27 Score=194.68 Aligned_cols=268 Identities=19% Similarity=0.326 Sum_probs=213.0
Q ss_pred CCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEE
Q 016187 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC 143 (394)
Q Consensus 64 ~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~ 143 (394)
.+.|.++.|+|....||++ +.|+.+++|++...++...++ |..++.+++|.++ ..+++|+.||.|+++|+++++..
T Consensus 13 ~d~IS~v~f~~~~~~LLvs-sWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~- 88 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVS-SWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNED- 88 (323)
T ss_pred hhceeeEEEcCcCCcEEEE-eccCcEEEEeccchhhhhhee-cCCceeeeeccCC-ceEEEeccCceEEEEEecCCcce-
Confidence 6789999999977766665 699999999998887666665 9999999999874 57889999999999999988754
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCC
Q 016187 144 TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSG 223 (394)
Q Consensus 144 ~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 223 (394)
.+..|.+++.++.+.+....+++|+.|++|++||.+.......+. ....|.++.. .|+.|+.|+.|..|.+||+++.
T Consensus 89 ~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEec--cCCEEEEeecCceEEEEEcccc
Confidence 455688999999999988999999999999999998754444333 2337777655 4778999999999999999987
Q ss_pred ceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC----cEEEEeccCC---------CCEEEEEECCCC
Q 016187 224 ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG----KVVSSLVSHT---------DSIECIGFSRSS 290 (394)
Q Consensus 224 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~----~~~~~~~~h~---------~~i~~v~~~~~~ 290 (394)
......+.. .....++|+++-|++.-+++++-||.+.+=.+... +.-..+..|. -+|++++|+|-.
T Consensus 166 ~~~~q~reS-~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~ 244 (323)
T KOG1036|consen 166 DEPFQRRES-SLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH 244 (323)
T ss_pred cchhhhccc-cceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecccc
Confidence 654432222 22345889999998888899999999887555443 2233455564 279999999999
Q ss_pred CeEEEEeCCCcEEEEeCCCCCcce-eccCCCCEEEEEEeCCCCEEEEEeC
Q 016187 291 PWAATGSMDQKLIIWDLQHSLPRS-TCDHEDGVTCLMWLGTSKYVVTGCV 339 (394)
Q Consensus 291 ~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~sg~~ 339 (394)
..||||+.||.|.+||+..++... ....+..|.+++|+.+|..||.|+.
T Consensus 245 ~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 245 GTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 999999999999999997654332 2334567999999999999999873
No 123
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=4e-27 Score=220.05 Aligned_cols=280 Identities=18% Similarity=0.269 Sum_probs=232.1
Q ss_pred eccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCC-eeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 016187 61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG-DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG 139 (394)
Q Consensus 61 ~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~-~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~ 139 (394)
.+|+..-+.|+|.|++ .+|.++|.|+.|++|+.... +...++.-|...|.+++. .+.+|++|+.+++|.+|...++
T Consensus 10 yaht~G~t~i~~d~~g-efi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDG-EFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcCCC-CEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCC
Confidence 3789999999999965 48899999999999997665 444455557888887765 4569999999999999999988
Q ss_pred ceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEc
Q 016187 140 NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219 (394)
Q Consensus 140 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 219 (394)
+.-..+....-+++.++++.+|++++.||.|-.|++.++......+.+.+|..+|.++.|+|.+++||+.+.||.|++||
T Consensus 87 ~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 87 EEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred CccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence 77656666667899999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred CCCCceEEEEcCCCC----c-ccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEecc--CCCCEEEEEECCCCCe
Q 016187 220 PKSGENIHVIRGHPY----H-TEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS--HTDSIECIGFSRSSPW 292 (394)
Q Consensus 220 ~~~~~~~~~~~~~~~----~-~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~--h~~~i~~v~~~~~~~~ 292 (394)
+.++...+.+.+... . ...+..++|+|++..+++-..|+.|++|+.........+.. +...+.+++|+|+|.|
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Y 246 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKY 246 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcE
Confidence 998887766654321 1 33456789999998889999999999999998887776643 4455999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 016187 293 AATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVW 346 (394)
Q Consensus 293 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iw 346 (394)
||+++.+|.|.|||..+-.. ......|+|++|.|+.+-+-.-...|...+|
T Consensus 247 iAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 247 IAASTLDGQILVWNVDTHER---HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred EeeeccCCcEEEEecccchh---ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 99999999999999986211 2234579999999998766555555555554
No 124
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=4.1e-27 Score=195.29 Aligned_cols=280 Identities=15% Similarity=0.251 Sum_probs=220.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecc
Q 016187 110 VSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG 189 (394)
Q Consensus 110 V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~ 189 (394)
-.|+.|++.|.+||+|..||.|.|||+.+...-..+.+|-.+|.+++|+++|+.|+++|.|..+.+||+..+.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 6789999999999999999999999999998888888999999999999999999999999999999999998877764
Q ss_pred cCcCeEEEEECCCCC-eEEEEeCCCcEEEEcCCCCceEEEEcCCC-C-cccCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 016187 190 HGSSVTCGDFTPDGK-TICTGSDDATLRVWNPKSGENIHVIRGHP-Y-HTEGLTCLTISADSTLALSGSKDGSVHMVNIT 266 (394)
Q Consensus 190 h~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~-~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~ 266 (394)
..++|+.+.|+|..+ .++..-.+..-.+-++..+.. ..+.... . ......+..|.+.|+++++|...|.+.+++..
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 567899999999543 333333344444444443221 1111110 0 01112334688999999999999999999999
Q ss_pred CCcEEEEeccCC-CCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcc-------ee-----ccCCCCEEEEEEeCCCCE
Q 016187 267 TGKVVSSLVSHT-DSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPR-------ST-----CDHEDGVTCLMWLGTSKY 333 (394)
Q Consensus 267 ~~~~~~~~~~h~-~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-------~~-----~~~~~~v~~~~~~~~~~~ 333 (394)
+.+++..+.--. ..|..+.++..+.+|+..+.|..|+.|+++.-... .. ........+++|+.+|.|
T Consensus 184 t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeY 263 (405)
T KOG1273|consen 184 TLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEY 263 (405)
T ss_pred hheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccE
Confidence 999988876655 78999999999999999999999999998632111 00 011223567889999999
Q ss_pred EEEEeC-CCeEEEEECCCCeEEEEeeccc-CceeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 334 VVTGCV-DGKVRVWDSLSGDCVRTFSGHR-DAIQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 334 l~sg~~-dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
+++|+. -..++||....|.+++.+.|-. .....+.|+|-.+.++|- ..|.++||....
T Consensus 264 v~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 264 VCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred EEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeec
Confidence 998874 3569999999999999999987 556789999999999988 789999998653
No 125
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.5e-27 Score=207.49 Aligned_cols=265 Identities=21% Similarity=0.304 Sum_probs=214.0
Q ss_pred EEeCC-CcEEEEeCCCCceEEEEecCCCCE-EEEEEcCCCCEEEEec-CCCeEEEEeCCccceeeeecccCcCeEEEEEC
Q 016187 124 SGGLD-GLVQIWDPSSGNLKCTLEGPGGGV-EWVSWHPRGHIVLAGS-EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT 200 (394)
Q Consensus 124 t~s~d-~~i~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~s-~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~ 200 (394)
+++.| .++.+||+.+|....++++..... ..+.. -.+.+++++. .-..+.+|.+..........--.+++.+++-+
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~-l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~ 90 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTA-LNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASS 90 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccccchhhhh-hchhheeeecccCccccccccCchhhhhhhcccccceeeeecC
Confidence 34444 459999999999888887652211 11111 1224555554 44578899987665444333446789999999
Q ss_pred CCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECC---------CCcEE
Q 016187 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT---------TGKVV 271 (394)
Q Consensus 201 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~---------~~~~~ 271 (394)
|.|.+|+.|+..|.|.+|.+.+|..+..+.. |-..|+|+.|+.|+.++++|+.||.|.+|.+. +-+++
T Consensus 91 n~G~~l~ag~i~g~lYlWelssG~LL~v~~a---HYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~ 167 (476)
T KOG0646|consen 91 NLGYFLLAGTISGNLYLWELSSGILLNVLSA---HYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPL 167 (476)
T ss_pred CCceEEEeecccCcEEEEEeccccHHHHHHh---hccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccce
Confidence 9999999999999999999999998877754 56789999999999999999999999999874 23567
Q ss_pred EEeccCCCCEEEEEECCC--CCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 016187 272 SSLVSHTDSIECIGFSRS--SPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSL 349 (394)
Q Consensus 272 ~~~~~h~~~i~~v~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~ 349 (394)
..+..|+-+|+.+.+.+. ..+++|+|.|.++++||+...........+..+.+++..|..+.+..|+.+|.|.+.++.
T Consensus 168 ~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~ 247 (476)
T KOG0646|consen 168 HIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLF 247 (476)
T ss_pred eeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehh
Confidence 888899999999988765 468999999999999999888766667778889999999999999999999999998753
Q ss_pred C----------------CeEEEEeecccC--ceeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 350 S----------------GDCVRTFSGHRD--AIQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 350 ~----------------~~~~~~~~~h~~--~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
. +..+..+.||.+ .|++|+++.||.+|+||+.||.|+|||+..
T Consensus 248 ~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 248 KLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYS 308 (476)
T ss_pred cCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecch
Confidence 2 334567889998 999999999999999999999999999753
No 126
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=6.1e-27 Score=213.17 Aligned_cols=291 Identities=20% Similarity=0.301 Sum_probs=233.6
Q ss_pred eeeeccCCcEEEEEEcCCC----------CcEEEEecCCCeEEEEEcCCCe---e----------eEe------------
Q 016187 58 HIFSGHSDEVYSVACSPTD----------ATLVATGGGDDKGFFWRINQGD---W----------ASE------------ 102 (394)
Q Consensus 58 ~~~~~h~~~v~~~~~~p~~----------~~~lasg~~d~~v~~w~~~~~~---~----------~~~------------ 102 (394)
..+.-|...|+.+.--|.+ ..-|.|++.|++|++|++.... . +..
T Consensus 363 ~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d 442 (1080)
T KOG1408|consen 363 SSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHD 442 (1080)
T ss_pred eeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhh
Confidence 3345688888887655511 1237899999999999986421 0 000
Q ss_pred ------------ecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCC---CCEEEEe
Q 016187 103 ------------IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPR---GHIVLAG 167 (394)
Q Consensus 103 ------------~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~ 167 (394)
.-+-+-.+++++.||+|++||+|..-|+++||++..-+.++++..|...|.++.|+.. .++|+++
T Consensus 443 ~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASa 522 (1080)
T KOG1408|consen 443 ASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASA 522 (1080)
T ss_pred ccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhc
Confidence 0112457999999999999999999999999999999999999999999999999853 4689999
Q ss_pred cCCCeEEEEeCCcc-ceeeeecccCcCeEEEEECCCC--CeEEEEeCCCcEEEEcCCC-Cc--eEEEEcCCCCcccCeEE
Q 016187 168 SEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTPDG--KTICTGSDDATLRVWNPKS-GE--NIHVIRGHPYHTEGLTC 241 (394)
Q Consensus 168 s~d~~i~iw~~~~~-~~~~~~~~h~~~v~~~~~~~~~--~~l~s~~~dg~i~vwd~~~-~~--~~~~~~~~~~~~~~i~~ 241 (394)
+.|.-|.+||+... .+++++.+|...|+++.|...| ..+++++.|+.|. ++... .. .+..-..+......+.-
T Consensus 523 srdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksim-Fr~~qk~~~g~~f~r~t~t~~ktTlYD 601 (1080)
T KOG1408|consen 523 SRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIM-FRVNQKASSGRLFPRHTQTLSKTTLYD 601 (1080)
T ss_pred cCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhh-eehhccccCceeccccccccccceEEE
Confidence 99999999998764 4567889999999999999877 6789999999874 33321 11 11111111222345778
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEecc---CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcc-eecc
Q 016187 242 LTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS---HTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPR-STCD 317 (394)
Q Consensus 242 ~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~---h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~ 317 (394)
+.+.|..+++++++.|..|+||++.+++..+.+++ |.+..-.+...|.+-|+|+...|.++.++|.-+..+. ...+
T Consensus 602 m~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~G 681 (1080)
T KOG1408|consen 602 MAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTG 681 (1080)
T ss_pred eeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcC
Confidence 89999999999999999999999999999988865 6667778899999999999999999999998776554 4578
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 016187 318 HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSL 349 (394)
Q Consensus 318 ~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~ 349 (394)
|...|+.+.|.+|-+.|++.+.||-|.||.+.
T Consensus 682 HsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 682 HSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred cchheeeeeecccchhheeecCCceEEEEECc
Confidence 99999999999999999999999999999864
No 127
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=2.7e-29 Score=228.71 Aligned_cols=253 Identities=25% Similarity=0.439 Sum_probs=224.6
Q ss_pred EEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEc
Q 016187 79 LVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWH 158 (394)
Q Consensus 79 ~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 158 (394)
++..+..+..+++|+... +-.|...|.++..-..++.+++|+.|..+-+|.......+..+.+|..+|.++.|+
T Consensus 6 ~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~ 79 (825)
T KOG0267|consen 6 FLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFD 79 (825)
T ss_pred ccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecC
Confidence 445555666677888643 56688889999887788999999999999999988777777889999999999999
Q ss_pred CCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccC
Q 016187 159 PRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEG 238 (394)
Q Consensus 159 ~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 238 (394)
+...+|++|+.+|+|++||++..+.++.+.||...+.+++|+|-+.++++|+.|+-+++||.+...+.+.+++ |...
T Consensus 80 ~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s---~~~v 156 (825)
T KOG0267|consen 80 TSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS---HTRV 156 (825)
T ss_pred cchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecC---Ccce
Confidence 9999999999999999999999999999999999999999999999999999999999999998888888776 5677
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCccee-cc
Q 016187 239 LTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRST-CD 317 (394)
Q Consensus 239 i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~ 317 (394)
+.++.++|+|++++.|++|.++++||+..|+.+..|..|+..+..+.|+|..-++++|+.|+++++||+++...... ..
T Consensus 157 v~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~ 236 (825)
T KOG0267|consen 157 VDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKP 236 (825)
T ss_pred eEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986543322 23
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCC
Q 016187 318 HEDGVTCLMWLGTSKYVVTGCVD 340 (394)
Q Consensus 318 ~~~~v~~~~~~~~~~~l~sg~~d 340 (394)
....|.|+.|+|++..+++|...
T Consensus 237 ~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 237 ETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ccCCceeeeecCCceeeecCchh
Confidence 35679999999999999888654
No 128
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.8e-26 Score=215.64 Aligned_cols=272 Identities=18% Similarity=0.296 Sum_probs=221.4
Q ss_pred CcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-ceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccce
Q 016187 105 GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG-NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY 183 (394)
Q Consensus 105 ~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~ 183 (394)
+|+..-+.|+|.|+|++|+|++.|+.|++|+..+- +...++..+...|.+++- .+.+|++|+.+++|..|....+..
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEE 88 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCCc
Confidence 68999999999999999999999999999997665 333333335666666654 455899999999999999987765
Q ss_pred eeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 016187 184 LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMV 263 (394)
Q Consensus 184 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~ 263 (394)
-..+....-++++++|+-+|+++|.|+.|-.|++-++.+......+++ |..+|.++.++|.+.+|++.+-||.|++|
T Consensus 89 ~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrg---h~apVl~l~~~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 89 DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRG---HDAPVLQLSYDPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred cceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecc---cCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence 555555677899999999999999999999999999988887777776 56789999999999999999999999999
Q ss_pred ECCCCcEEEEecc--------CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceec---cCCCCEEEEEEeCCCC
Q 016187 264 NITTGKVVSSLVS--------HTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTC---DHEDGVTCLMWLGTSK 332 (394)
Q Consensus 264 d~~~~~~~~~~~~--------h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~ 332 (394)
++.++.+..++.. ....+..++|+|++..++..+.|+.|++|+.......... .+...++++.|+|.|+
T Consensus 166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~ 245 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGK 245 (933)
T ss_pred EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCc
Confidence 9999887666543 1345678999999888899999999999998766444332 2344589999999999
Q ss_pred EEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcE
Q 016187 333 YVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTA 385 (394)
Q Consensus 333 ~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i 385 (394)
|||+++.+|.|.|||+.+-.. +.-...|.+++|.|+++.+-.-...|+.
T Consensus 246 YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~ 294 (933)
T KOG1274|consen 246 YIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTL 294 (933)
T ss_pred EEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeecccc
Confidence 999999999999999987222 2234579999999998876554444443
No 129
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.96 E-value=3.9e-27 Score=211.96 Aligned_cols=313 Identities=19% Similarity=0.333 Sum_probs=231.7
Q ss_pred CCCCcEEEEecCCCeEEEEEcCCCeee------EeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEE--E
Q 016187 74 PTDATLVATGGGDDKGFFWRINQGDWA------SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT--L 145 (394)
Q Consensus 74 p~~~~~lasg~~d~~v~~w~~~~~~~~------~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~--~ 145 (394)
|...++||-+..||.|.++|.....+. .....|...|..+.|.|....|++++.|.++++||++++++... +
T Consensus 61 ~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~ 140 (720)
T KOG0321|consen 61 PNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLN 140 (720)
T ss_pred CCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceee
Confidence 344678999999999999997654433 44568999999999999667899999999999999999988766 8
Q ss_pred ecCCCCEEEEEEcCCCC-EEEEecCCCeEEEEeCCccc---------------------------eeeeecccCcCeEE-
Q 016187 146 EGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAA---------------------------YLNMFSGHGSSVTC- 196 (394)
Q Consensus 146 ~~~~~~v~~~~~~~~~~-~l~~~s~d~~i~iw~~~~~~---------------------------~~~~~~~h~~~v~~- 196 (394)
.+|.+.|.+++|+|.+. .+++|+.||.|.|||.+-.. .+.....+...+.+
T Consensus 141 ~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ss 220 (720)
T KOG0321|consen 141 LGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSS 220 (720)
T ss_pred cccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeee
Confidence 89999999999999765 78999999999999974211 11122344445555
Q ss_pred --EEECCCCCeEEEEeC-CCcEEEEcCCCCceEEEEc-----CCCCc---ccCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 016187 197 --GDFTPDGKTICTGSD-DATLRVWNPKSGENIHVIR-----GHPYH---TEGLTCLTISADSTLALSGSKDGSVHMVNI 265 (394)
Q Consensus 197 --~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~-----~~~~~---~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~ 265 (394)
+-+..|...||+++. |+.|+|||+++........ ..+.+ ..+++++.....|.++++.+.|++|++||+
T Consensus 221 vTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm 300 (720)
T KOG0321|consen 221 VTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNM 300 (720)
T ss_pred eEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEec
Confidence 556678889999888 9999999999876543322 11122 346888999999999999999999999999
Q ss_pred CCCc--EEEEeccCCC---CEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC--cceeccCCCCEEEEEEeCCC-CEEEEE
Q 016187 266 TTGK--VVSSLVSHTD---SIECIGFSRSSPWAATGSMDQKLIIWDLQHSL--PRSTCDHEDGVTCLMWLGTS-KYVVTG 337 (394)
Q Consensus 266 ~~~~--~~~~~~~h~~---~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~-~~l~sg 337 (394)
.+.. ++..+.++.. .+. -..+|++.++++|+.|....+|.+.+.. +....+|...|++++|.|.. .-++++
T Consensus 301 ~s~s~sP~~~~sg~~~~sf~vk-s~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~Tc 379 (720)
T KOG0321|consen 301 RSLSISPVAEFSGKLNSSFYVK-SELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATC 379 (720)
T ss_pred cccCcCchhhccCcccceeeee-eecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceee
Confidence 8643 2333332221 122 2368999999999999999999997653 33456899999999998754 457777
Q ss_pred eCCCeEEEEECCCCe--------------EEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 338 CVDGKVRVWDSLSGD--------------CVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 338 ~~dg~i~iwd~~~~~--------------~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
+.|..+++|++..+- ..++|++|...+..+.++..+.+.... .+..++|.
T Consensus 380 SdD~~~kiW~l~~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss~~~t~~~pR--~~~~r~~s 443 (720)
T KOG0321|consen 380 SDDFRVKIWRLSNGLEEIYAADKDSIVYEYSRRFKGHLPQVLNVNSSLRKTYKDPR--EGMNRISS 443 (720)
T ss_pred ccCcceEEEeccCchhhccccccchhhhhhhhhhhccccccccccccccccccchh--hhcccccc
Confidence 999999999975432 234567787777777666544443332 44444443
No 130
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=2.2e-27 Score=205.98 Aligned_cols=245 Identities=20% Similarity=0.340 Sum_probs=196.1
Q ss_pred cCCCCEEEEEEcCCCC-EEEEecCCCeEEEEeCCccc----------eeeeecccCcCeEEEEECCC-CCeEEEEeCCCc
Q 016187 147 GPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAA----------YLNMFSGHGSSVTCGDFTPD-GKTICTGSDDAT 214 (394)
Q Consensus 147 ~~~~~v~~~~~~~~~~-~l~~~s~d~~i~iw~~~~~~----------~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~ 214 (394)
.|.+.|+.+++-|+.. ++++.+..+.++|||..+-. +...+.||...-.++.|++. .-+|++++.|++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 4788899999999875 66777888999999975321 11257789887788999984 457899999999
Q ss_pred EEEEcCCCCce----EEEEcCCCCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEECC--CCcEEEEeccCCCCEEEEEEC
Q 016187 215 LRVWNPKSGEN----IHVIRGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNIT--TGKVVSSLVSHTDSIECIGFS 287 (394)
Q Consensus 215 i~vwd~~~~~~----~~~~~~~~~~~~~i~~~~~~~-~~~~l~~g~~dg~i~i~d~~--~~~~~~~~~~h~~~i~~v~~~ 287 (394)
|++||+..... +........|...|.-++|++ ...++.+.+.|+.+.|||++ +.++.+...+|...|+|++|+
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN 281 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence 99999875432 111111234677788899998 45678889999999999999 566677788999999999999
Q ss_pred CCC-CeEEEEeCCCcEEEEeCCCC--CcceeccCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCC------------
Q 016187 288 RSS-PWAATGSMDQKLIIWDLQHS--LPRSTCDHEDGVTCLMWLGTS-KYVVTGCVDGKVRVWDSLSG------------ 351 (394)
Q Consensus 288 ~~~-~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~iwd~~~~------------ 351 (394)
|-+ .+||+||.|++|++||++.. ......+|...|.++.|+|.. ..||+++.|+++.+||+..-
T Consensus 282 p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dg 361 (422)
T KOG0264|consen 282 PFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDG 361 (422)
T ss_pred CCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccC
Confidence 965 56899999999999999864 334456899999999999975 57888899999999997431
Q ss_pred --eEEEEeecccCceeEEEEccCCCE-EEEEeCCCcEEEEecc
Q 016187 352 --DCVRTFSGHRDAIQAISVSAHQDF-LVSVSLDGTARVFEIA 391 (394)
Q Consensus 352 --~~~~~~~~h~~~v~~l~~~~~~~~-l~s~s~dg~i~iw~~~ 391 (394)
+++....||...|..+.|+|+.+. |+|++.|+.+.||++.
T Consensus 362 ppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 362 PPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 234556799999999999998775 7799999999999976
No 131
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.9e-26 Score=200.34 Aligned_cols=282 Identities=18% Similarity=0.257 Sum_probs=226.1
Q ss_pred CCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCC--CeeeEeecCcccCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCc
Q 016187 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQ--GDWASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDPSSGN 140 (394)
Q Consensus 64 ~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~--~~~~~~~~~h~~~V~~v~~s~~g~-~l~t~s~d~~i~vwd~~~~~ 140 (394)
.+.|+++.|||. ..+|.++|.|++++||.+.. ...+..+.--.-+|.+.+|.|+|. .+++++.-..++.||+.+.+
T Consensus 213 ~~~I~sv~FHp~-~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHPT-APLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecCC-CceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 468999999995 66888999999999998753 345566655678999999999998 89999999999999999887
Q ss_pred eEEE--EecC-CCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEE
Q 016187 141 LKCT--LEGP-GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV 217 (394)
Q Consensus 141 ~~~~--~~~~-~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~v 217 (394)
.... +.++ ...+.....+|++++++..+..|.|.+....++..+..++ -.+.|..+.|+.+++.|++++.+|.|.+
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYV 370 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEE
Confidence 5432 2222 2356667788999999999999999999999888877765 3457889999999999999999999999
Q ss_pred EcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC------CcEEEEeccCCCCEEEEEECCCCC
Q 016187 218 WNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT------GKVVSSLVSHTDSIECIGFSRSSP 291 (394)
Q Consensus 218 wd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~------~~~~~~~~~h~~~i~~v~~~~~~~ 291 (394)
||++...+++.+.... .-.-++++.++++.++++|+..|.|.|||..+ .+++.++..-...|+.++|+++.+
T Consensus 371 ~nl~~~~~~~rf~D~G--~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q 448 (514)
T KOG2055|consen 371 WNLRQNSCLHRFVDDG--SVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ 448 (514)
T ss_pred EecCCcceEEEEeecC--ccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchh
Confidence 9999998887775321 12346788899999999999999999999654 456777777788999999999999
Q ss_pred eEEEEeC--CCcEEEEeCCCCCcceec----cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 016187 292 WAATGSM--DQKLIIWDLQHSLPRSTC----DHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSL 349 (394)
Q Consensus 292 ~l~s~s~--dg~i~iwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~ 349 (394)
+||.+|. ...+++--+.....-... ..-..|+|++|+|.+.+++.|-.+|++.+|.+.
T Consensus 449 iLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 449 ILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 9887765 567888766432111111 112348999999999999999999999999753
No 132
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.2e-27 Score=219.64 Aligned_cols=275 Identities=22% Similarity=0.384 Sum_probs=215.9
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc--eEEEEe--cC---CCCEEEEEEcC-CCCEEEEecCCCeEEEEeCCc-
Q 016187 110 VSSLAFSMDGQLLASGGLDGLVQIWDPSSGN--LKCTLE--GP---GGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADR- 180 (394)
Q Consensus 110 V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~--~~~~~~--~~---~~~v~~~~~~~-~~~~l~~~s~d~~i~iw~~~~- 180 (394)
..+|...++-..++.++. ..++||..+... ..+.+. .. .-.+..|+|+. ..++|++++..|.|.+||+..
T Consensus 42 ~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~ 120 (839)
T KOG0269|consen 42 ANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKS 120 (839)
T ss_pred cceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCcc
Confidence 455666788878877764 467888765432 122221 11 11345577874 357899999999999999987
Q ss_pred --cceeeeecccCcCeEEEEECC-CCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcC-CCCEEEEEeC
Q 016187 181 --AAYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-DSTLALSGSK 256 (394)
Q Consensus 181 --~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~g~~ 256 (394)
.+.+..|..|...+.++.|++ .-.+|++|++||+|++||++..+...++.+ ..+.|+-+.|+| .+..++++..
T Consensus 121 ~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~---nSESiRDV~fsp~~~~~F~s~~d 197 (839)
T KOG0269|consen 121 IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS---NSESIRDVKFSPGYGNKFASIHD 197 (839)
T ss_pred ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccc---cchhhhceeeccCCCceEEEecC
Confidence 566778889999999999998 456889999999999999998887776665 456799999999 5678899999
Q ss_pred CCcEEEEECCCC-cEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcc--eeccCCCCEEEEEEeCCCCE
Q 016187 257 DGSVHMVNITTG-KVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPR--STCDHEDGVTCLMWLGTSKY 333 (394)
Q Consensus 257 dg~i~i~d~~~~-~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~~ 333 (394)
.|.+++||++.. ++..++.+|.++|.|+.|+|++.|||||+.|+.|+|||+...... ....-..+|.++.|-|..++
T Consensus 198 sG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 198 SGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSY 277 (839)
T ss_pred CceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccc
Confidence 999999999875 466778899999999999999999999999999999999854332 23334567999999998876
Q ss_pred E-EEEe--CCCeEEEEECCCCe-EEEEeecccCceeEEEEcc-CCCEEEEEeCCCcEEEE
Q 016187 334 V-VTGC--VDGKVRVWDSLSGD-CVRTFSGHRDAIQAISVSA-HQDFLVSVSLDGTARVF 388 (394)
Q Consensus 334 l-~sg~--~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~dg~i~iw 388 (394)
. ++++ .|..|+|||++..- +..+|..|+..++.++|.. |...+.+++.||+|..-
T Consensus 278 hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh 337 (839)
T KOG0269|consen 278 HLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQH 337 (839)
T ss_pred hhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHh
Confidence 4 4443 47889999987654 4568899999999999975 56788999999987543
No 133
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.3e-25 Score=202.03 Aligned_cols=283 Identities=21% Similarity=0.357 Sum_probs=231.3
Q ss_pred cCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCee-eEeecCcc-cCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 016187 63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW-ASEIQGHK-DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN 140 (394)
Q Consensus 63 h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~-~~~~~~h~-~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~ 140 (394)
-..+|.++|++...+ -||.+-.|+.|.+|++...=+ ...+.|+. ..|.+++|+ +|..|++.+.+|.|.-||+.+++
T Consensus 24 ~Ps~I~slA~s~kS~-~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk 101 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSN-QLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLK 101 (691)
T ss_pred eccceEEEEEeccCC-ceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCc
Confidence 357899999998644 578889999999999977543 34566665 579999999 46678899999999999999999
Q ss_pred eEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcccee--eeecccCcCeEEEEECCCCCeEEEEeCCCcEEEE
Q 016187 141 LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL--NMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVW 218 (394)
Q Consensus 141 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vw 218 (394)
.+..+....+.|++++.+|.+..++.|+.||.++.++...++.. +.+....+.+.+++|+|++..+++|+.||.|++|
T Consensus 102 ~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriw 181 (691)
T KOG2048|consen 102 QKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIW 181 (691)
T ss_pred eeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEE
Confidence 99999999999999999999999999999998888887765543 3444456899999999999999999999999999
Q ss_pred cCCCCceEEEEcC--CCC---cccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeE
Q 016187 219 NPKSGENIHVIRG--HPY---HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWA 293 (394)
Q Consensus 219 d~~~~~~~~~~~~--~~~---~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l 293 (394)
|..+++.++.... ... ...-+.++.+-.+ ..+++|...|+|.+||...+.++.++..|...|.|++..++..++
T Consensus 182 d~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~v 260 (691)
T KOG2048|consen 182 DVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRV 260 (691)
T ss_pred EcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeE
Confidence 9999988773321 111 1112445555444 467899999999999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCCc-----ceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 016187 294 ATGSMDQKLIIWDLQHSLP-----RSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLS 350 (394)
Q Consensus 294 ~s~s~dg~i~iwd~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~ 350 (394)
.+++.|+++..|...+... .....|...|.+++..++ .+++|+.|..+.+-.++.
T Consensus 261 fsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 261 FSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred EEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence 9999999999988765532 223457778999988876 899999999999876543
No 134
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=7e-29 Score=226.04 Aligned_cols=242 Identities=25% Similarity=0.460 Sum_probs=220.8
Q ss_pred CceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 016187 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW 134 (394)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vw 134 (394)
..++.+..|...|.++..- ...+.+++||.|..+-+|.+.....+..|.+|..+|.++.|+++..+|+.|+.+|+|++|
T Consensus 19 ~~~~~~~~hsaav~~lk~~-~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~w 97 (825)
T KOG0267|consen 19 WDTREFVAHSAAVGCLKIR-KSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVW 97 (825)
T ss_pred ccchhhhhhhhhhceeeee-ccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeee
Confidence 3456677899999888873 356789999999999999998888888899999999999999999999999999999999
Q ss_pred eCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCc
Q 016187 135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT 214 (394)
Q Consensus 135 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 214 (394)
|+..++.+.++.+|...+..+.|+|-+.+.+.|+.|..+.+||.+...+...+.+|...+.+++|+|+|+++++|+.|.+
T Consensus 98 DleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~t 177 (825)
T KOG0267|consen 98 DLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNT 177 (825)
T ss_pred ehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcce
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred EEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEE
Q 016187 215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAA 294 (394)
Q Consensus 215 i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~ 294 (394)
++|||...|+.+..+.. |...+.++.++|..-++++|+.|+++++||+++-..+.+.......|.+.+|+|++..++
T Consensus 178 vki~d~~agk~~~ef~~---~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~ 254 (825)
T KOG0267|consen 178 VKIWDLTAGKLSKEFKS---HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVL 254 (825)
T ss_pred eeeeccccccccccccc---ccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeee
Confidence 99999998887777665 566788889999999999999999999999999888888877789999999999999998
Q ss_pred EEeCCC
Q 016187 295 TGSMDQ 300 (394)
Q Consensus 295 s~s~dg 300 (394)
+|....
T Consensus 255 ~G~q~s 260 (825)
T KOG0267|consen 255 SGEQIS 260 (825)
T ss_pred cCchhh
Confidence 886553
No 135
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=5.5e-26 Score=197.47 Aligned_cols=283 Identities=16% Similarity=0.250 Sum_probs=229.0
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC--CceEEEEecCCCCEEEEEEcCCCC-EEEEecCCCeEEEEeCCccce
Q 016187 107 KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS--GNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAY 183 (394)
Q Consensus 107 ~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~d~~i~iw~~~~~~~ 183 (394)
...|++|.|+|....|++|+.|++++||-+.. ...+..+....-+|.+.+|+|+|+ .+++++....++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 46899999999999999999999999997653 234555555677899999999999 889999999999999988765
Q ss_pred ee--eecccC-cCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcE
Q 016187 184 LN--MFSGHG-SSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260 (394)
Q Consensus 184 ~~--~~~~h~-~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i 260 (394)
.+ ...++. ..+....++|++++|+..+..|.|.+.-..+++.+..++. .+.+..++|+.+++.+++.+.+|.|
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki----eG~v~~~~fsSdsk~l~~~~~~GeV 368 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI----EGVVSDFTFSSDSKELLASGGTGEV 368 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee----ccEEeeEEEecCCcEEEEEcCCceE
Confidence 43 333443 3456678899999999999999999999999887777662 4568889999999999999999999
Q ss_pred EEEECCCCcEEEEeccCC-CCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC------cce-eccCCCCEEEEEEeCCCC
Q 016187 261 HMVNITTGKVVSSLVSHT-DSIECIGFSRSSPWAATGSMDQKLIIWDLQHSL------PRS-TCDHEDGVTCLMWLGTSK 332 (394)
Q Consensus 261 ~i~d~~~~~~~~~~~~h~-~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~------~~~-~~~~~~~v~~~~~~~~~~ 332 (394)
.+||++...+++.+.... -.-++++.++++.|||+||..|.|.|||..+.. +.. .......|+.+.|+++.+
T Consensus 369 ~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q 448 (514)
T KOG2055|consen 369 YVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ 448 (514)
T ss_pred EEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchh
Confidence 999999999888876421 123567788999999999999999999965321 111 123446799999999999
Q ss_pred EEEEEeC--CCeEEEEECCCCeEEEEeecc---cCceeEEEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 333 YVVTGCV--DGKVRVWDSLSGDCVRTFSGH---RDAIQAISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 333 ~l~sg~~--dg~i~iwd~~~~~~~~~~~~h---~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
.|+.+|. +..+++-.+.+......+..- -+.|+||+|+|.+-+||.|-.+|.+.+|.+.-|
T Consensus 449 iLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~hy 514 (514)
T KOG2055|consen 449 ILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLHHY 514 (514)
T ss_pred hhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeeccC
Confidence 9988764 567888888777666655433 246899999999999999999999999998643
No 136
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=5.9e-26 Score=188.71 Aligned_cols=285 Identities=20% Similarity=0.267 Sum_probs=206.8
Q ss_pred ceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeE--eec--CcccCEEEEEEcCCCCEE-EEEeCCCc
Q 016187 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWAS--EIQ--GHKDSVSSLAFSMDGQLL-ASGGLDGL 130 (394)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~--~~~--~h~~~V~~v~~s~~g~~l-~t~s~d~~ 130 (394)
...++.||.++|++++|+. ++..|||+++|++|++|++...+... .++ -.-+--+.+.|+||-+-+ +++-...+
T Consensus 78 ~~~~LKgH~~~vt~~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~ 156 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSS-DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNK 156 (420)
T ss_pred hhhhhhccCCceeeeEEcC-CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCE
Confidence 3456789999999999997 56789999999999999986532110 011 012345789999998754 45555668
Q ss_pred EEEEeCCC---CceEEE---------EecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEE
Q 016187 131 VQIWDPSS---GNLKCT---------LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGD 198 (394)
Q Consensus 131 i~vwd~~~---~~~~~~---------~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~ 198 (394)
+++|.+.. |..... -+.|.-.+-.+-....+.++++++.|..|.+|++. ++.+..+......-...+
T Consensus 157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aa 235 (420)
T KOG2096|consen 157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAA 235 (420)
T ss_pred EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccccccee
Confidence 99997532 221111 12244455566666778899999999999999998 777777766666667789
Q ss_pred ECCCCCeEEEEeCCCcEEEEcCC---CCc-----eEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC---
Q 016187 199 FTPDGKTICTGSDDATLRVWNPK---SGE-----NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT--- 267 (394)
Q Consensus 199 ~~~~~~~l~s~~~dg~i~vwd~~---~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~--- 267 (394)
.+|+|+++++++..--|++|.+- .|. .+..+++ |...|.+++|+++...+++.+.||++++||..-
T Consensus 236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkG---H~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~ 312 (420)
T KOG2096|consen 236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKG---HQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYE 312 (420)
T ss_pred eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheecc---chhheeeeeeCCCcceeEEEecCCcEEEeeccceEe
Confidence 99999999999999999999863 221 2233444 677899999999999999999999999999742
Q ss_pred ----CcEEEEe----ccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc--ceeccCCCCEEEEEEeCCCCEEEEE
Q 016187 268 ----GKVVSSL----VSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLP--RSTCDHEDGVTCLMWLGTSKYVVTG 337 (394)
Q Consensus 268 ----~~~~~~~----~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~sg 337 (394)
.+.++.. ..-......+.++|++..||.+. ...+++|..+.... .....|...|.+++|+++|++++++
T Consensus 313 ~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atc 391 (420)
T KOG2096|consen 313 AGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATC 391 (420)
T ss_pred cCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeee
Confidence 1222222 11122233789999999887654 55799998776432 2234688899999999999999987
Q ss_pred eCCCeEEEEE
Q 016187 338 CVDGKVRVWD 347 (394)
Q Consensus 338 ~~dg~i~iwd 347 (394)
+ |..++++.
T Consensus 392 G-dr~vrv~~ 400 (420)
T KOG2096|consen 392 G-DRYVRVIR 400 (420)
T ss_pred c-ceeeeeec
Confidence 6 67777764
No 137
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.95 E-value=1.8e-26 Score=202.09 Aligned_cols=290 Identities=16% Similarity=0.207 Sum_probs=227.2
Q ss_pred EEEEecCCCeEEEEEcCCCeeeEeecCcc--cCEEEEEEcCCCCEEEEE--eCCCcEEEEeCCC--CceEEEEecCCCCE
Q 016187 79 LVATGGGDDKGFFWRINQGDWASEIQGHK--DSVSSLAFSMDGQLLASG--GLDGLVQIWDPSS--GNLKCTLEGPGGGV 152 (394)
Q Consensus 79 ~lasg~~d~~v~~w~~~~~~~~~~~~~h~--~~V~~v~~s~~g~~l~t~--s~d~~i~vwd~~~--~~~~~~~~~~~~~v 152 (394)
++|++| .++++||+...+....+-.|+ ..+.++.|+.... |+++ +.|..+++|.-.. ++....-+.....-
T Consensus 6 ~~aS~g--d~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~ 82 (673)
T KOG4378|consen 6 HVASTG--DKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNA 82 (673)
T ss_pred eeeccC--CceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccchH
Confidence 455544 578899987766555554343 3489999987654 4444 5678899996322 22211111112234
Q ss_pred EEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCC
Q 016187 153 EWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH 232 (394)
Q Consensus 153 ~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 232 (394)
.|++......++++|+..+.++|||++...+.+.+++|...|+++.++....+||+++..|.|.|..+.+++....+...
T Consensus 83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~ 162 (673)
T KOG4378|consen 83 FCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTID 162 (673)
T ss_pred HHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecC
Confidence 45555556689999999999999999988888899999999999999999999999999999999999998776665532
Q ss_pred CCcccCeEEEEEcCCCCE-EEEEeCCCcEEEEECCCCcEEEE-eccCCCCEEEEEECCCCC-eEEEEeCCCcEEEEeCCC
Q 016187 233 PYHTEGLTCLTISADSTL-ALSGSKDGSVHMVNITTGKVVSS-LVSHTDSIECIGFSRSSP-WAATGSMDQKLIIWDLQH 309 (394)
Q Consensus 233 ~~~~~~i~~~~~~~~~~~-l~~g~~dg~i~i~d~~~~~~~~~-~~~h~~~i~~v~~~~~~~-~l~s~s~dg~i~iwd~~~ 309 (394)
....++-+.++|..++ |.+++.+|.+.+||+....++.. ...|..+...|+|+|... +|++.+.|.+|.+||++.
T Consensus 163 --sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s 240 (673)
T KOG4378|consen 163 --SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS 240 (673)
T ss_pred --CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccc
Confidence 1234678999997764 55688999999999988776655 456999999999999765 688999999999999987
Q ss_pred CCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-eEEEEeecccCceeEEEEccCC
Q 016187 310 SLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSG-DCVRTFSGHRDAIQAISVSAHQ 373 (394)
Q Consensus 310 ~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~ 373 (394)
...........+.+.++|.++|.+|++|...|.|..||++.. ..+..+..|...|++|+|-|..
T Consensus 241 ~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 241 QASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred ccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 665555667778999999999999999999999999999865 4688899999999999998754
No 138
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4.5e-27 Score=188.54 Aligned_cols=243 Identities=17% Similarity=0.276 Sum_probs=196.4
Q ss_pred ecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcc---ceeeeecccCcCeEEEEECC--CCCeEEEEeCCCcEEEEcC
Q 016187 146 EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA---AYLNMFSGHGSSVTCGDFTP--DGKTICTGSDDATLRVWNP 220 (394)
Q Consensus 146 ~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~---~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~dg~i~vwd~ 220 (394)
..|.+.|..+...--|+.|++++.|++|+|+.++.. +.+..+.||.++|..++|.. -|.+||+++.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 346666666666666889999999999999998653 56778999999999999964 7999999999999999997
Q ss_pred CCCceEEEEcCCCCcccCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCC-c--EEEEeccCCCCEEEEEECCC---C--
Q 016187 221 KSGENIHVIRGHPYHTEGLTCLTISAD--STLALSGSKDGSVHMVNITTG-K--VVSSLVSHTDSIECIGFSRS---S-- 290 (394)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~g~~dg~i~i~d~~~~-~--~~~~~~~h~~~i~~v~~~~~---~-- 290 (394)
..+ .......+..|...+++++|.|. |-.|++++.||.|.+++.++. . .-+....|.-.++++.|.|. +
T Consensus 88 ~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 88 ENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred CCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 766 33344445668889999999996 468899999999999988754 1 12234679999999999986 3
Q ss_pred ---------CeEEEEeCCCcEEEEeCCCC---CcceeccCCCCEEEEEEeCCC----CEEEEEeCCCeEEEEECCCC--e
Q 016187 291 ---------PWAATGSMDQKLIIWDLQHS---LPRSTCDHEDGVTCLMWLGTS----KYVVTGCVDGKVRVWDSLSG--D 352 (394)
Q Consensus 291 ---------~~l~s~s~dg~i~iwd~~~~---~~~~~~~~~~~v~~~~~~~~~----~~l~sg~~dg~i~iwd~~~~--~ 352 (394)
+.|++|+.|..|+||+.... ......+|.+-|..++|.|.- .++++++.||+|.||-.... .
T Consensus 167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~ 246 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP 246 (299)
T ss_pred cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence 45999999999999998763 334466899999999999974 58999999999999975421 1
Q ss_pred -EEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 353 -CVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 353 -~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
....++.....++.+.|+..|+.|+.++.|+.|.+|.
T Consensus 247 wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 247 WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 1223445667899999999999999999999999997
No 139
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.4e-25 Score=185.67 Aligned_cols=266 Identities=23% Similarity=0.344 Sum_probs=197.6
Q ss_pred ecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC--Cc--eEEEEecCCCCEEEEEEcCC--CCEEEEecCCCeEEEE
Q 016187 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS--GN--LKCTLEGPGGGVEWVSWHPR--GHIVLAGSEDSTVWMW 176 (394)
Q Consensus 103 ~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~--~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~s~d~~i~iw 176 (394)
-.+|.+-|.++.|.+-|+++|||+.|++|+|||... +. +....+.|.+.|..+.|.+. |+.+++++.|+++.||
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 357999999999999999999999999999999643 33 44567889999999999764 7899999999999999
Q ss_pred eCCcc---------ceeeeecccCcCeEEEEECC--CCCeEEEEeCCCcEEEEcCCCCceEEEE------c----CCCCc
Q 016187 177 NADRA---------AYLNMFSGHGSSVTCGDFTP--DGKTICTGSDDATLRVWNPKSGENIHVI------R----GHPYH 235 (394)
Q Consensus 177 ~~~~~---------~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~------~----~~~~~ 235 (394)
.-... .....+....+.|+.+.|.| -|-.||+++.||.||||+....-.+... . ....+
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 75211 12344556678999999999 5778999999999999986543322211 1 11123
Q ss_pred ccCeEEEEEcCC---CCEEEEEeCC-----CcEEEEECCCC----cEEEEeccCCCCEEEEEECCCC----CeEEEEeCC
Q 016187 236 TEGLTCLTISAD---STLALSGSKD-----GSVHMVNITTG----KVVSSLVSHTDSIECIGFSRSS----PWAATGSMD 299 (394)
Q Consensus 236 ~~~i~~~~~~~~---~~~l~~g~~d-----g~i~i~d~~~~----~~~~~~~~h~~~i~~v~~~~~~----~~l~s~s~d 299 (394)
..+..|+.|+|. ..++++|+.+ +.++||....+ ..+.++..|.++|++++|.|+- .+||+++.|
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence 456788999874 4577888766 47888865432 3456778999999999999973 368999999
Q ss_pred CcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEE
Q 016187 300 QKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSV 379 (394)
Q Consensus 300 g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~ 379 (394)
| |+||.++...... .+..+. .|+. -+. ..-+.+..|.+|++.|+.+.|+-.|..|+|.
T Consensus 249 g-v~I~~v~~~~s~i---~~ee~~----~~~~--------~~~------l~v~~vs~~~~H~~~VWrv~wNmtGtiLsSt 306 (361)
T KOG2445|consen 249 G-VRIFKVKVARSAI---EEEEVL----APDL--------MTD------LPVEKVSELDDHNGEVWRVRWNMTGTILSST 306 (361)
T ss_pred c-EEEEEEeeccchh---hhhccc----CCCC--------ccc------cceEEeeeccCCCCceEEEEEeeeeeEEeec
Confidence 9 9999986432111 011110 1111 011 1234567789999999999999999999999
Q ss_pred eCCCcEEEEec
Q 016187 380 SLDGTARVFEI 390 (394)
Q Consensus 380 s~dg~i~iw~~ 390 (394)
|+||.||+|+.
T Consensus 307 GdDG~VRLWka 317 (361)
T KOG2445|consen 307 GDDGCVRLWKA 317 (361)
T ss_pred CCCceeeehhh
Confidence 99999999974
No 140
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=1.7e-26 Score=203.11 Aligned_cols=241 Identities=20% Similarity=0.306 Sum_probs=189.0
Q ss_pred CCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeE------------eecCcccCEEEEEEcCCC-CEEEEEeCCCc
Q 016187 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWAS------------EIQGHKDSVSSLAFSMDG-QLLASGGLDGL 130 (394)
Q Consensus 64 ~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~------------~~~~h~~~V~~v~~s~~g-~~l~t~s~d~~ 130 (394)
...|++++|+|++..+|+. ++...++|+|-...++.. .-+||...++|.+|+|+. +.++|++.||+
T Consensus 214 ~h~i~sl~ys~Tg~~iLvv-sg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgt 292 (641)
T KOG0772|consen 214 THQINSLQYSVTGDQILVV-SGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGT 292 (641)
T ss_pred ccccceeeecCCCCeEEEE-ecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCc
Confidence 4579999999987766543 455778888865444332 236899999999999976 57889999999
Q ss_pred EEEEeCCCCceE-EEEe-----cCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcc---ceeeeecccCc--CeEEEEE
Q 016187 131 VQIWDPSSGNLK-CTLE-----GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA---AYLNMFSGHGS--SVTCGDF 199 (394)
Q Consensus 131 i~vwd~~~~~~~-~~~~-----~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~---~~~~~~~~h~~--~v~~~~~ 199 (394)
+|+|++...+.. ..++ +..-+++.++|+|+++.+|+|..||.|.+|+.... ...+.-.+|.. .|+|+.|
T Consensus 293 lRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~F 372 (641)
T KOG0772|consen 293 LRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISF 372 (641)
T ss_pred EEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEe
Confidence 999999876532 2222 22236889999999999999999999999997542 22334456765 8999999
Q ss_pred CCCCCeEEEEeCCCcEEEEcCCCCc-eEEEEcCCCCcccCeEEEEEcCCCCEEEEEeC------CCcEEEEECCCCcEEE
Q 016187 200 TPDGKTICTGSDDATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISADSTLALSGSK------DGSVHMVNITTGKVVS 272 (394)
Q Consensus 200 ~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~------dg~i~i~d~~~~~~~~ 272 (394)
+++|++|++-+.|.++++||++..+ ++....+.+ ...+-+.++|+|+.+++++|.. .|+|.+||..+-..+.
T Consensus 373 S~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~-t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ 451 (641)
T KOG0772|consen 373 SYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLP-TPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVY 451 (641)
T ss_pred ccccchhhhccCCCceeeeeccccccchhhhcCCC-ccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEE
Confidence 9999999999999999999998754 333333322 2234567889999999999864 5789999999988888
Q ss_pred EeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEe
Q 016187 273 SLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWD 306 (394)
Q Consensus 273 ~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd 306 (394)
++.-....|..+.|+|.-..+..|+.||++++|-
T Consensus 452 ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 452 KIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred EecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 8877788899999999988888899999999864
No 141
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.95 E-value=4.8e-26 Score=205.95 Aligned_cols=280 Identities=19% Similarity=0.328 Sum_probs=215.5
Q ss_pred cEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEE
Q 016187 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL 145 (394)
Q Consensus 66 ~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~ 145 (394)
.|+.++|-|++..++..+ +.++.+||.+.|....+++||++.|+|++|+.||+++|+|+.|..|.+|...-...+ .
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-k- 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-K- 89 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-e-
Confidence 799999999988877654 478999999999999999999999999999999999999999999999985432222 1
Q ss_pred ecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCce
Q 016187 146 EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN 225 (394)
Q Consensus 146 ~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 225 (394)
..|.+.|.++.|+|-.+.|++++- +..-+|........+. .....+.+++|..||++|+.|-.+|+|.+-+-. ++.
T Consensus 90 YSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V~K~--kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEe 165 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSVSKH--KSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEE 165 (1081)
T ss_pred eccCCeeeEeecCchHHHhhhcch-hhccccChhhhhHHhh--hhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCc
Confidence 248889999999999999999876 3466788765543321 124567788999999999999999999988643 333
Q ss_pred EEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEE
Q 016187 226 IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIW 305 (394)
Q Consensus 226 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iw 305 (394)
...+.......++|.+++|+|.... +. ...++......++.++
T Consensus 166 k~~I~Rpgg~Nspiwsi~~~p~sg~----G~---------------------------------~di~aV~DW~qTLSFy 208 (1081)
T KOG1538|consen 166 KVKIERPGGSNSPIWSICWNPSSGE----GR---------------------------------NDILAVADWGQTLSFY 208 (1081)
T ss_pred ceEEeCCCCCCCCceEEEecCCCCC----Cc---------------------------------cceEEEEeccceeEEE
Confidence 3333322234556777777764330 00 1235555556666666
Q ss_pred eCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcE
Q 016187 306 DLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTA 385 (394)
Q Consensus 306 d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i 385 (394)
.+...........+....|+.+.++|.|++.|+.|+.+++| .+.|..+.++......|+.++..|++++++.|+.||+|
T Consensus 209 ~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~f-TR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTi 287 (1081)
T KOG1538|consen 209 QLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLF-TRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTI 287 (1081)
T ss_pred EecceeecccccCCCCchhheeccCCcEEEEccCCCceEEE-eecCeEEeeccccceeEEEEEEccCCceEEEEEccCee
Confidence 66554443333334456799999999999999999999999 57788888888788899999999999999999999999
Q ss_pred EEEecc
Q 016187 386 RVFEIA 391 (394)
Q Consensus 386 ~iw~~~ 391 (394)
.-|++.
T Consensus 288 ACyNl~ 293 (1081)
T KOG1538|consen 288 ACYNLI 293 (1081)
T ss_pred ehhhhH
Confidence 988763
No 142
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.95 E-value=6.8e-23 Score=191.75 Aligned_cols=332 Identities=32% Similarity=0.594 Sum_probs=264.9
Q ss_pred ceeeeeccC-CcEEEEEE-cCCCCcEEEE-ecCCCeEEEEEcCC-CeeeEeecCcccCEEEEEEcCCCCEEEEEeC-CCc
Q 016187 56 STHIFSGHS-DEVYSVAC-SPTDATLVAT-GGGDDKGFFWRINQ-GDWASEIQGHKDSVSSLAFSMDGQLLASGGL-DGL 130 (394)
Q Consensus 56 ~~~~~~~h~-~~v~~~~~-~p~~~~~las-g~~d~~v~~w~~~~-~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~-d~~ 130 (394)
....+.++. ..+..+.+ ++....+++. +..|+.+++|+... ......+..|...|..++|+|++.++++++. |+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 179 (466)
T COG2319 100 LIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGT 179 (466)
T ss_pred eEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCc
Confidence 344455533 36777777 7755534444 44499999999988 7888889999999999999999999988885 999
Q ss_pred EEEEeCCCCceEEEEecCCCCEEEEEEcCCCC-EEEEecCCCeEEEEeCCccceee-eecccCcCeEEEEECCCCCeEEE
Q 016187 131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLN-MFSGHGSSVTCGDFTPDGKTICT 208 (394)
Q Consensus 131 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~d~~i~iw~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s 208 (394)
+++|+...+.....+.+|...+..++|+|++. .+++++.|+.+++|+...+..+. .+.+|.... ...|+|++..+++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 258 (466)
T COG2319 180 IKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLAS 258 (466)
T ss_pred eEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEE
Confidence 99999999888888888999999999999998 55566999999999988777777 688888775 4489999989999
Q ss_pred EeCCCcEEEEcCCCCce-EEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEec--cCCCCEEEEE
Q 016187 209 GSDDATLRVWNPKSGEN-IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV--SHTDSIECIG 285 (394)
Q Consensus 209 ~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~--~h~~~i~~v~ 285 (394)
++.|+.+++|+...... +..+ ..|...+.++.+.|++..+++++.|+.+++|++.+........ .|...+..+.
T Consensus 259 ~~~d~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (466)
T COG2319 259 GSSDGTIRLWDLRSSSSLLRTL---SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLS 335 (466)
T ss_pred ecCCCcEEEeeecCCCcEEEEE---ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEE
Confidence 99999999999987665 4443 2356789999999988888889999999999998887766665 7887899999
Q ss_pred ECCCCCeEEEE-eCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEE-EeCCCeEEEEECCCCeEEEEeecccCc
Q 016187 286 FSRSSPWAATG-SMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVT-GCVDGKVRVWDSLSGDCVRTFSGHRDA 363 (394)
Q Consensus 286 ~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-g~~dg~i~iwd~~~~~~~~~~~~h~~~ 363 (394)
+.+++..++.+ ..|+.+.+|++..............+..+.+.+ ...++. +..++.+.+|+.........+..+...
T Consensus 336 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (466)
T COG2319 336 FSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSR 414 (466)
T ss_pred ECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCc
Confidence 94332455555 688999999987765222222222278888888 544444 688999999999998888777765478
Q ss_pred eeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 364 IQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 364 v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
+....+.+++.++++++.++.+++|++..
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 415 VTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred EEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 89999999999999999999999998753
No 143
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.4e-27 Score=215.92 Aligned_cols=236 Identities=20% Similarity=0.328 Sum_probs=197.8
Q ss_pred EEEEEEcCCCCcEEEEecCCCeEEEEEcCC---CeeeEeecCcccCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceE
Q 016187 67 VYSVACSPTDATLVATGGGDDKGFFWRINQ---GDWASEIQGHKDSVSSLAFSMDG-QLLASGGLDGLVQIWDPSSGNLK 142 (394)
Q Consensus 67 v~~~~~~p~~~~~lasg~~d~~v~~w~~~~---~~~~~~~~~h~~~V~~v~~s~~g-~~l~t~s~d~~i~vwd~~~~~~~ 142 (394)
+..|.|+.-..++|||++..|.|.+||+.. .+++..|..|+..|+++.|++.. .+|++||.||+|++||+...+..
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~ 169 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK 169 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc
Confidence 445677766788999999999999999987 56667889999999999999865 68899999999999999998888
Q ss_pred EEEecCCCCEEEEEEcCC-CCEEEEecCCCeEEEEeCCcc-ceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcC
Q 016187 143 CTLEGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP 220 (394)
Q Consensus 143 ~~~~~~~~~v~~~~~~~~-~~~l~~~s~d~~i~iw~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 220 (394)
.++.+..+.|+.|+|+|. +..++++...|.+++||++.. ++...+.+|.++|.|+.|+|++.+||||+.|+.|+|||+
T Consensus 170 ~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~ 249 (839)
T KOG0269|consen 170 STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDM 249 (839)
T ss_pred ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEec
Confidence 888888899999999995 568899999999999999864 567788999999999999999999999999999999999
Q ss_pred CCCce--EEEEcCCCCcccCeEEEEEcCCCCEE-EEEe--CCCcEEEEECCCCc-EEEEeccCCCCEEEEEECC-CCCeE
Q 016187 221 KSGEN--IHVIRGHPYHTEGLTCLTISADSTLA-LSGS--KDGSVHMVNITTGK-VVSSLVSHTDSIECIGFSR-SSPWA 293 (394)
Q Consensus 221 ~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l-~~g~--~dg~i~i~d~~~~~-~~~~~~~h~~~i~~v~~~~-~~~~l 293 (394)
.+++. +.++. ...++.++.|-|+..+. ++++ .|..|+|||++..- +..++..|++.++.++|.. +...+
T Consensus 250 t~~~~~~~~tIn----Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l 325 (839)
T KOG0269|consen 250 TDSRAKPKHTIN----TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINL 325 (839)
T ss_pred cCCCccceeEEe----ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceee
Confidence 76543 33333 24578999999987644 4443 58899999998654 5677889999999999976 45578
Q ss_pred EEEeCCCcEEEEe
Q 016187 294 ATGSMDQKLIIWD 306 (394)
Q Consensus 294 ~s~s~dg~i~iwd 306 (394)
.+++.||++..-.
T Consensus 326 ~s~sKD~tv~qh~ 338 (839)
T KOG0269|consen 326 WSCSKDGTVLQHL 338 (839)
T ss_pred EeecCccHHHHhh
Confidence 8899998876533
No 144
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.95 E-value=9.3e-23 Score=190.81 Aligned_cols=329 Identities=32% Similarity=0.610 Sum_probs=260.3
Q ss_pred eeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCe-eeEeecCcc-cCEEEEEE-cCCCC-EEEEEeC-CCcEE
Q 016187 58 HIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD-WASEIQGHK-DSVSSLAF-SMDGQ-LLASGGL-DGLVQ 132 (394)
Q Consensus 58 ~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~-~~~~~~~h~-~~V~~v~~-s~~g~-~l~t~s~-d~~i~ 132 (394)
..+.+|...+.++.+.+. +..++.++.|+.+.+|+...+. ....+.++. ..+..+.+ ++++. +++..+. |+.++
T Consensus 59 ~~~~~~~~~i~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 59 LLLRGHEDSITSIAFSPD-GELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVK 137 (466)
T ss_pred heeeeccceEEEEEECCC-CcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEE
Confidence 367789999999999985 5567778899999999998876 666676644 37888888 88887 5555444 99999
Q ss_pred EEeCCC-CceEEEEecCCCCEEEEEEcCCCCEEEEecC-CCeEEEEeCCccceeeeecccCcCeEEEEECCCCC-eEEEE
Q 016187 133 IWDPSS-GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK-TICTG 209 (394)
Q Consensus 133 vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~-d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~ 209 (394)
+|+... ......+..|...|..++|+|++..+++++. ++.+++|+......+..+.+|...+.+++|+|++. .++++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 217 (466)
T COG2319 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASG 217 (466)
T ss_pred EEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEe
Confidence 999988 7777888899999999999999998888886 99999999998888888889999999999999998 55666
Q ss_pred eCCCcEEEEcCCCCceEE-EEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE-EEEeccCCCCEEEEEEC
Q 016187 210 SDDATLRVWNPKSGENIH-VIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV-VSSLVSHTDSIECIGFS 287 (394)
Q Consensus 210 ~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~-~~~~~~h~~~i~~v~~~ 287 (394)
+.|+.|++||...+.... .+..+ .... ...++|++.++++++.|+.+++|++..... +..+..|...+.++.|+
T Consensus 218 ~~d~~i~~wd~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 293 (466)
T COG2319 218 SSDGTIRLWDLSTGKLLRSTLSGH---SDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFS 293 (466)
T ss_pred cCCCcEEEEECCCCcEEeeecCCC---Ccce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEEC
Confidence 999999999988776666 34443 3332 227999998899999999999999987664 44446788999999999
Q ss_pred CCCCeEEEEeCCCcEEEEeCCCCCccee---ccCCCCEEEEEEeCCCCEEEEE-eCCCeEEEEECCCCeEEEEeecccCc
Q 016187 288 RSSPWAATGSMDQKLIIWDLQHSLPRST---CDHEDGVTCLMWLGTSKYVVTG-CVDGKVRVWDSLSGDCVRTFSGHRDA 363 (394)
Q Consensus 288 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~h~~~ 363 (394)
|++..+++++.|+.+++|++........ ..|...+..+.|.+++..++.+ ..|+.+++|+...............
T Consensus 294 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~- 372 (466)
T COG2319 294 PDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN- 372 (466)
T ss_pred CCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCce-
Confidence 9888888899999999998876543333 2566678888883232455555 6889999999887773333333222
Q ss_pred eeEEEEccCCCEEEE-EeCCCcEEEEeccCC
Q 016187 364 IQAISVSAHQDFLVS-VSLDGTARVFEIADF 393 (394)
Q Consensus 364 v~~l~~~~~~~~l~s-~s~dg~i~iw~~~~~ 393 (394)
+..+.+++ ...+++ +..++.+.+|+....
T Consensus 373 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 402 (466)
T COG2319 373 VLSVSFSP-DGRVVSSGSTDGTVRLWDLSTG 402 (466)
T ss_pred EEEEEECC-CCCEEEEecCCCceEEEecccC
Confidence 88899988 544554 789999999997653
No 145
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.4e-24 Score=179.85 Aligned_cols=248 Identities=21% Similarity=0.336 Sum_probs=195.2
Q ss_pred eeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCC----eeeEeecCcccCEEEEEEcC--CCCEEEEEeCCCcEE
Q 016187 59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG----DWASEIQGHKDSVSSLAFSM--DGQLLASGGLDGLVQ 132 (394)
Q Consensus 59 ~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~----~~~~~~~~h~~~V~~v~~s~--~g~~l~t~s~d~~i~ 132 (394)
+-.+|.+-|.++.|.+. ++.+||++.|.+++|||.+.. .+....+.|.+.|..|.|.+ -|+.+|+++.|++++
T Consensus 8 i~s~h~DlihdVs~D~~-GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~ 86 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFY-GRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVS 86 (361)
T ss_pred cccCCcceeeeeeeccc-CceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCcee
Confidence 34689999999999984 678999999999999996432 34456789999999999975 489999999999999
Q ss_pred EEeCCC------C---ceEEEEecCCCCEEEEEEcCC--CCEEEEecCCCeEEEEeCCccc------eeeeec-------
Q 016187 133 IWDPSS------G---NLKCTLEGPGGGVEWVSWHPR--GHIVLAGSEDSTVWMWNADRAA------YLNMFS------- 188 (394)
Q Consensus 133 vwd~~~------~---~~~~~~~~~~~~v~~~~~~~~--~~~l~~~s~d~~i~iw~~~~~~------~~~~~~------- 188 (394)
||.-.. + ....++......|+.++|.|. |..+++++.||.+|||+....- +...++
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 997411 1 234567778889999999996 6689999999999999864321 122222
Q ss_pred ccCcCeEEEEECCC---CCeEEEEeCC-----CcEEEEcCCCCc-eEEEEcCCCCcccCeEEEEEcCCC----CEEEEEe
Q 016187 189 GHGSSVTCGDFTPD---GKTICTGSDD-----ATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISADS----TLALSGS 255 (394)
Q Consensus 189 ~h~~~v~~~~~~~~---~~~l~s~~~d-----g~i~vwd~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~----~~l~~g~ 255 (394)
.+..+..|+.|+|. ..+||.|+.+ +.++||....+. ....+...+-+..+|+.++|.|.- .++++++
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~ 246 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVAT 246 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEee
Confidence 46677889999973 4578888766 478899765443 444444444578899999999963 5889999
Q ss_pred CCCcEEEEECCCC--------------------cEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 016187 256 KDGSVHMVNITTG--------------------KVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQ 308 (394)
Q Consensus 256 ~dg~i~i~d~~~~--------------------~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~ 308 (394)
.|| |+||.++.. +.+..+..|...|..+.|+-.|..|++.+.||.|++|...
T Consensus 247 kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 247 KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 999 999998731 2345677899999999999999999999999999999753
No 146
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=7.2e-24 Score=192.37 Aligned_cols=283 Identities=18% Similarity=0.268 Sum_probs=228.1
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceE-EEEec-CCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcccee
Q 016187 107 KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK-CTLEG-PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL 184 (394)
Q Consensus 107 ~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~ 184 (394)
..+|.+|||+.+.+.||.+-.+|.|.+|++..+-.. ..+.+ ....|..++|.+ +..|++.+.+|.|.-||+.+.+.+
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~ 103 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQK 103 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCcee
Confidence 567999999999999999999999999999875332 33444 456899999994 556889999999999999999999
Q ss_pred eeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 016187 185 NMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN 264 (394)
Q Consensus 185 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d 264 (394)
..+..-++.|++++.+|.+..++.|+.||.+..++...+........ .-....+.+++|+|++..+++|+.||.|++||
T Consensus 104 ~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l-~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd 182 (691)
T KOG2048|consen 104 YNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSL-MRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWD 182 (691)
T ss_pred EEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeec-ccccceEEEEEecCCccEEEecccCceEEEEE
Confidence 99998999999999999999999999999888887766554333221 12356799999999999999999999999999
Q ss_pred CCCCcEEEEecc--------CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC-cceeccCCCCEEEEEEeCCCCEEE
Q 016187 265 ITTGKVVSSLVS--------HTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSL-PRSTCDHEDGVTCLMWLGTSKYVV 335 (394)
Q Consensus 265 ~~~~~~~~~~~~--------h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~ 335 (394)
..++..+..... ...-|.++.|-.++ .+++|..-|+|++||..... ......|...|.|++-.+++.+++
T Consensus 183 ~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vf 261 (691)
T KOG2048|consen 183 VKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVF 261 (691)
T ss_pred cCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEE
Confidence 999876652111 12346777777544 68999999999999987653 344556888999999999999999
Q ss_pred EEeCCCeEEEEECCCCeE----EEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccCCC
Q 016187 336 TGCVDGKVRVWDSLSGDC----VRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADFK 394 (394)
Q Consensus 336 sg~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~~ 394 (394)
+++.|+.|..+...+.+. ......|...|.+++..++ .+++||.|.++.+=....||
T Consensus 262 saGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~ 322 (691)
T KOG2048|consen 262 SAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFK 322 (691)
T ss_pred EccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccccC
Confidence 999999999998665533 2334578888999998875 89999999999887665543
No 147
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.94 E-value=3e-25 Score=199.92 Aligned_cols=282 Identities=15% Similarity=0.241 Sum_probs=208.5
Q ss_pred EEEEEcC---CCCEEEEEeCCCcEEEEeCCCCce------EEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcc
Q 016187 111 SSLAFSM---DGQLLASGGLDGLVQIWDPSSGNL------KCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA 181 (394)
Q Consensus 111 ~~v~~s~---~g~~l~t~s~d~~i~vwd~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~ 181 (394)
.+..|++ ...+|+.+..||.|.++|...... +.....|...|..+.|.|-...|++++.|.++++||+++.
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence 3466764 235799999999999999865432 2445678899999999996678999999999999999988
Q ss_pred ceeee--ecccCcCeEEEEECCC-CCeEEEEeCCCcEEEEcCCCCce--------------------EE----EEcCCCC
Q 016187 182 AYLNM--FSGHGSSVTCGDFTPD-GKTICTGSDDATLRVWNPKSGEN--------------------IH----VIRGHPY 234 (394)
Q Consensus 182 ~~~~~--~~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~--------------------~~----~~~~~~~ 234 (394)
.+... +.||...|.+++|.|. ...|++|+.||.|.|||++-... .. .+....+
T Consensus 133 ~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA 212 (720)
T KOG0321|consen 133 RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA 212 (720)
T ss_pred eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence 87765 8899999999999995 45789999999999999874320 00 0000112
Q ss_pred cccCeEE---EEEcCCCCEEEEEeC-CCcEEEEECCCCcEEEE--------eccC---CCCEEEEEECCCCCeEEEEeCC
Q 016187 235 HTEGLTC---LTISADSTLALSGSK-DGSVHMVNITTGKVVSS--------LVSH---TDSIECIGFSRSSPWAATGSMD 299 (394)
Q Consensus 235 ~~~~i~~---~~~~~~~~~l~~g~~-dg~i~i~d~~~~~~~~~--------~~~h---~~~i~~v~~~~~~~~l~s~s~d 299 (394)
+...|.+ +.+..|...|++++. |+.|++||+++...... +..| .-.+.++.....|.+|...+.|
T Consensus 213 ~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD 292 (720)
T KOG0321|consen 213 ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD 292 (720)
T ss_pred ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC
Confidence 2233433 555667778888776 99999999987653322 2223 2346677778888998888889
Q ss_pred CcEEEEeCCCCCcceeccCCCC-----EEEEEEeCCCCEEEEEeCCCeEEEEECCCCeE-EEEeecccCceeEEEEccCC
Q 016187 300 QKLIIWDLQHSLPRSTCDHEDG-----VTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDC-VRTFSGHRDAIQAISVSAHQ 373 (394)
Q Consensus 300 g~i~iwd~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~~~~~ 373 (394)
+.|..|++..........+... -..-..+|++.+|++|+.|...++|.+.+.+. ...+.||.-.|++++|.|..
T Consensus 293 ~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~ 372 (720)
T KOG0321|consen 293 NSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSA 372 (720)
T ss_pred CcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecccc
Confidence 9999999976533322211111 11223579999999999999999999877654 55688999999999998743
Q ss_pred -CEEEEEeCCCcEEEEeccC
Q 016187 374 -DFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 374 -~~l~s~s~dg~i~iw~~~~ 392 (394)
.-++++++|.+++||++.+
T Consensus 373 ~t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 373 TTPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred CCCceeeccCcceEEEeccC
Confidence 3477789999999999854
No 148
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.94 E-value=2.8e-25 Score=188.57 Aligned_cols=243 Identities=19% Similarity=0.315 Sum_probs=189.9
Q ss_pred ceeeeeccCCcEEEEEEcCC-CCcEEEEecCCCeEEEEEcCC----------------CeeeEeecCcccCEEEEEEcCC
Q 016187 56 STHIFSGHSDEVYSVACSPT-DATLVATGGGDDKGFFWRINQ----------------GDWASEIQGHKDSVSSLAFSMD 118 (394)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~p~-~~~~lasg~~d~~v~~w~~~~----------------~~~~~~~~~h~~~V~~v~~s~~ 118 (394)
......+|.+.++.+..+|- +..+.|+-+..|.|+||++.. .+.+.++.+|...-++++|||-
T Consensus 143 ~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~ 222 (440)
T KOG0302|consen 143 IEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPI 222 (440)
T ss_pred ccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccc
Confidence 34445678999999988875 456889999999999999742 2456778899999999999993
Q ss_pred C-CEEEEEeCCCcEEEEeCCCCceEE---EEecCCCCEEEEEEcCCC-CEEEEecCCCeEEEEeCCcccee--eeecccC
Q 016187 119 G-QLLASGGLDGLVQIWDPSSGNLKC---TLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNADRAAYL--NMFSGHG 191 (394)
Q Consensus 119 g-~~l~t~s~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~-~~l~~~s~d~~i~iw~~~~~~~~--~~~~~h~ 191 (394)
. ..|+||..-+.|++|...+|.... .+.+|...|..++|+|.. ..+++||.|++|+|||++.++.. ...+.|.
T Consensus 223 ~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~ 302 (440)
T KOG0302|consen 223 KTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHN 302 (440)
T ss_pred cccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccC
Confidence 3 357889888999999999887653 456799999999999975 48899999999999999877322 2237899
Q ss_pred cCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCc---eEEEEcCCCCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEECCC
Q 016187 192 SSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE---NIHVIRGHPYHTEGLTCLTISAD-STLALSGSKDGSVHMVNITT 267 (394)
Q Consensus 192 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~g~~dg~i~i~d~~~ 267 (394)
+.|+-+.|+..-.+||+|+.||+++|||++.-+ .+..++ +|..+|+++.|+|. ...+++++.|..|.+||+.-
T Consensus 303 sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk---~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 303 SDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFK---YHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred CceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEE---eccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 999999999988899999999999999998643 344444 57889999999994 57888899999999999853
Q ss_pred CcE--------E--------EEeccC--CCCEEEEEECCCCC-eEEEEeCCCc
Q 016187 268 GKV--------V--------SSLVSH--TDSIECIGFSRSSP-WAATGSMDQK 301 (394)
Q Consensus 268 ~~~--------~--------~~~~~h--~~~i~~v~~~~~~~-~l~s~s~dg~ 301 (394)
..- . +-+..| ...+..+.|++.-+ ++++.+.||-
T Consensus 380 E~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 380 EADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred cCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence 210 0 112224 33577788888754 6777777773
No 149
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.94 E-value=1.1e-24 Score=189.33 Aligned_cols=289 Identities=20% Similarity=0.238 Sum_probs=219.6
Q ss_pred eeccCCcEEEEEEcCCCC-cEEEEecCCCeEEEEEcCCC----eeeEeecCcccCEEEEEEcCCC-CEEEEEeCCCcEEE
Q 016187 60 FSGHSDEVYSVACSPTDA-TLVATGGGDDKGFFWRINQG----DWASEIQGHKDSVSSLAFSMDG-QLLASGGLDGLVQI 133 (394)
Q Consensus 60 ~~~h~~~v~~~~~~p~~~-~~lasg~~d~~v~~w~~~~~----~~~~~~~~h~~~V~~v~~s~~g-~~l~t~s~d~~i~v 133 (394)
..-|...|++++|||+.. .++|.|..-|.|-+||+.+. +-+..+..|..+|.+|.|+|.. ..+++.|+||+|++
T Consensus 182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~ 261 (498)
T KOG4328|consen 182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL 261 (498)
T ss_pred eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeee
Confidence 445788999999999877 78999999999999999422 2334567899999999999965 68889999999999
Q ss_pred EeCCCCceE--EEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccce-eeeecccCcCeEEEEECCC-CCeEEEE
Q 016187 134 WDPSSGNLK--CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY-LNMFSGHGSSVTCGDFTPD-GKTICTG 209 (394)
Q Consensus 134 wd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~-~~~~~~h~~~v~~~~~~~~-~~~l~s~ 209 (394)
-|++.+... ..+......+..+.|+.+...++.+..=|.+.+||++.... ...+.-|...|..++++|. -.+|||+
T Consensus 262 ~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~ 341 (498)
T KOG4328|consen 262 QDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATA 341 (498)
T ss_pred eeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeec
Confidence 999876432 23332444567778888888888888878999999987654 4556678889999999995 4578999
Q ss_pred eCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCC
Q 016187 210 SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS 289 (394)
Q Consensus 210 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~ 289 (394)
+.|++++|||++.-.. .. +| +-....|...|.++.|||.
T Consensus 342 s~D~T~kIWD~R~l~~------K~-----------sp------------------------~lst~~HrrsV~sAyFSPs 380 (498)
T KOG4328|consen 342 SLDQTAKIWDLRQLRG------KA-----------SP------------------------FLSTLPHRRSVNSAYFSPS 380 (498)
T ss_pred ccCcceeeeehhhhcC------CC-----------Cc------------------------ceecccccceeeeeEEcCC
Confidence 9999999999864221 00 01 1122358889999999999
Q ss_pred CCeEEEEeCCCcEEEEeCC----CCCcceeccCCCC------EEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeec
Q 016187 290 SPWAATGSMDQKLIIWDLQ----HSLPRSTCDHEDG------VTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSG 359 (394)
Q Consensus 290 ~~~l~s~s~dg~i~iwd~~----~~~~~~~~~~~~~------v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 359 (394)
+..|++.+.|..|+|||.. ...+...+.|... ....+|.|+..++++|-.-..|-|+|...++.+.++..
T Consensus 381 ~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~ 460 (498)
T KOG4328|consen 381 GGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHD 460 (498)
T ss_pred CCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccC
Confidence 8889999999999999973 2233333444322 23468999999999999999999999998888877665
Q ss_pred ccC-ceeE-EEEccCCCEEEEEe-CCCcEEEEe
Q 016187 360 HRD-AIQA-ISVSAHQDFLVSVS-LDGTARVFE 389 (394)
Q Consensus 360 h~~-~v~~-l~~~~~~~~l~s~s-~dg~i~iw~ 389 (394)
-.. .|.+ ..|+|-+..+++|| .-|.|.+|-
T Consensus 461 P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 461 PESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred ccccccccceeecccccceeccCCccceEEEEe
Confidence 433 5655 48999888666665 568888884
No 150
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.94 E-value=9.5e-25 Score=196.59 Aligned_cols=166 Identities=19% Similarity=0.307 Sum_probs=129.3
Q ss_pred ceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCee--e---EeecCc-ccCEEEEEEcCCCCEEEEEeCCC
Q 016187 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDW--A---SEIQGH-KDSVSSLAFSMDGQLLASGGLDG 129 (394)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~--~---~~~~~h-~~~V~~v~~s~~g~~l~t~s~d~ 129 (394)
-..++-+|.+.|+.+.|+|-...+||||+.|..|+||.+..+-- + ...-+| .-.|.++.|+|...-|+..+.-|
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g 150 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHG 150 (1012)
T ss_pred ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCc
Confidence 35567899999999999998778999999999999999974321 1 122334 45688999999765555555679
Q ss_pred cEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCc-cceeeeecccCcC-eEEEEECCCCCeEE
Q 016187 130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR-AAYLNMFSGHGSS-VTCGDFTPDGKTIC 207 (394)
Q Consensus 130 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~-~~~~~~~~~h~~~-v~~~~~~~~~~~l~ 207 (394)
+++|||+.+++....+.+|.+.|.++.|+.+|.+|++.+.|.+|+|||.+. +..++...+|.+. =..+.|.-+-..|+
T Consensus 151 ~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rli 230 (1012)
T KOG1445|consen 151 SVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERLI 230 (1012)
T ss_pred eEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhhh
Confidence 999999999999999999999999999999999999999999999999875 4667777888653 12455654444565
Q ss_pred EEeCC----CcEEEEcCC
Q 016187 208 TGSDD----ATLRVWNPK 221 (394)
Q Consensus 208 s~~~d----g~i~vwd~~ 221 (394)
+.+.+ ..|++||++
T Consensus 231 sTGF~~~R~reV~~~Dtr 248 (1012)
T KOG1445|consen 231 STGFTTKRIREVRAYDTR 248 (1012)
T ss_pred hcccchhhheeeeeeecc
Confidence 55443 457788765
No 151
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.7e-24 Score=178.69 Aligned_cols=290 Identities=19% Similarity=0.279 Sum_probs=213.0
Q ss_pred CCCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEE
Q 016187 53 PDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ 132 (394)
Q Consensus 53 ~~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~ 132 (394)
|...+.++.... ..|+.|++. +.+||.|..||.+.+||+.+....+.+.+|..+|.+++||+||++|+|+|.|..|+
T Consensus 14 PEel~~tld~~~--a~~~~Fs~~-G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~ 90 (405)
T KOG1273|consen 14 PEELTHTLDNPL--AECCQFSRW-GDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIK 90 (405)
T ss_pred hHhhceeccCCc--cceEEeccC-cceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeE
Confidence 334444554222 789999995 67899999999999999999988889999999999999999999999999999999
Q ss_pred EEeCCCCceEEEEecCCCCEEEEEEcCCCC-EEEEecCCCeEEEEeCCccceeeee---ccc-CcCeEEEEECCCCCeEE
Q 016187 133 IWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMF---SGH-GSSVTCGDFTPDGKTIC 207 (394)
Q Consensus 133 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~d~~i~iw~~~~~~~~~~~---~~h-~~~v~~~~~~~~~~~l~ 207 (394)
+||+..|..++.+.. ..+|..+.|+|... ..++.-.+..-.+-++...+....- .+. .....+..|.+.|++++
T Consensus 91 lwDl~~gs~l~rirf-~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIi 169 (405)
T KOG1273|consen 91 LWDLLKGSPLKRIRF-DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYII 169 (405)
T ss_pred EEeccCCCceeEEEc-cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEE
Confidence 999999998877764 57899999999654 3444444444445554432211110 011 11223446899999999
Q ss_pred EEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-------cE--EEEecc--
Q 016187 208 TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG-------KV--VSSLVS-- 276 (394)
Q Consensus 208 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~-------~~--~~~~~~-- 276 (394)
+|...|.+.++|..+-+++..++... ...|..+.++..|.+++..+.|..|+.++++.- .+ .++++.
T Consensus 170 tGtsKGkllv~~a~t~e~vas~rits--~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvV 247 (405)
T KOG1273|consen 170 TGTSKGKLLVYDAETLECVASFRITS--VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVV 247 (405)
T ss_pred EecCcceEEEEecchheeeeeeeech--heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHH
Confidence 99999999999999988887766432 356889999999999999999999999997621 11 111111
Q ss_pred CCCCEEEEEECCCCCeEEEEe-CCCcEEEEeCCCCCccee-ccCC-CCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 016187 277 HTDSIECIGFSRSSPWAATGS-MDQKLIIWDLQHSLPRST-CDHE-DGVTCLMWLGTSKYVVTGCVDGKVRVWDSL 349 (394)
Q Consensus 277 h~~~i~~v~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~-~~~~-~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~ 349 (394)
..-+=.++.|+.+|.|++.++ ....+.||.-..+...+. .+.. .....+.|+|-...+++- ..|.|++|...
T Consensus 248 Nk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 248 NKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred hhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEee
Confidence 112234678999999987665 456799998766544333 2322 346678899988888877 78999999753
No 152
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.93 E-value=6.3e-24 Score=182.04 Aligned_cols=304 Identities=23% Similarity=0.371 Sum_probs=215.0
Q ss_pred CCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCC---------eeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 016187 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQG---------DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW 134 (394)
Q Consensus 64 ~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~---------~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vw 134 (394)
..+|+.+.|++.....+||||.|..|++|.++.. +....|..|...|+++.|+|+|.+||+|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 4589999999977669999999999999997543 3456788999999999999999999999999999999
Q ss_pred eCC--------C--------CceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEE
Q 016187 135 DPS--------S--------GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGD 198 (394)
Q Consensus 135 d~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~ 198 (394)
... + ......+.+|...+..++|+|++.++++++.|+.+++||+..+.....+..|...+..++
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva 172 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA 172 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence 765 2 123456678899999999999999999999999999999999999999999999999999
Q ss_pred ECCCCCeEEEEeCCCcEEEEcCCCCceEEEEc-----C---CC--------Cccc----CeEEEEEcCCCCEEEEEeC--
Q 016187 199 FTPDGKTICTGSDDATLRVWNPKSGENIHVIR-----G---HP--------YHTE----GLTCLTISADSTLALSGSK-- 256 (394)
Q Consensus 199 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-----~---~~--------~~~~----~i~~~~~~~~~~~l~~g~~-- 256 (394)
|.|-++++++-+.|...+.+.....+.++... . +. +|.+ -...++|+|+|.++++.+.
T Consensus 173 wDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~ 252 (434)
T KOG1009|consen 173 WDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLF 252 (434)
T ss_pred cchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccccee
Confidence 99999999999999988777765544332221 0 00 1111 1334678899998887532
Q ss_pred --CCcE-----EEEECCC-CcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEe
Q 016187 257 --DGSV-----HMVNITT-GKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWL 328 (394)
Q Consensus 257 --dg~i-----~i~d~~~-~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~ 328 (394)
.+.+ ++++-.. .++...+.....+...+.|+| ..|.++..... .. +.-.
T Consensus 253 ~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~p--------------Vy~elrp~~~~------~~---~~~l 309 (434)
T KOG1009|consen 253 KVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSP--------------VYYELRPLSSE------KF---LFVL 309 (434)
T ss_pred eeCCceeeceeEeeccccccCceeecCCCCcceEEEEeee--------------eEEEecccccc------cc---cccc
Confidence 1111 1221110 112222222233333333332 12222211100 00 1112
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEee-cccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 329 GTSKYVVTGCVDGKVRVWDSLSGDCVRTFS-GHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 329 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
|....++. .....|++||..+.+.+.... -|-..|+.++|++||.+++..|.||..-+-.++
T Consensus 310 pyrlvfai-At~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe 372 (434)
T KOG1009|consen 310 PYRLVFAI-ATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFE 372 (434)
T ss_pred ccceEEEE-eecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEc
Confidence 33333444 446689999998887776553 577889999999999999999999987765544
No 153
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.2e-23 Score=182.21 Aligned_cols=233 Identities=23% Similarity=0.381 Sum_probs=183.4
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceE---------------------EEEecCCCCEEEEEEcCC-CCEEEEecCCCeEEE
Q 016187 118 DGQLLASGGLDGLVQIWDPSSGNLK---------------------CTLEGPGGGVEWVSWHPR-GHIVLAGSEDSTVWM 175 (394)
Q Consensus 118 ~g~~l~t~s~d~~i~vwd~~~~~~~---------------------~~~~~~~~~v~~~~~~~~-~~~l~~~s~d~~i~i 175 (394)
-|+++|.|..|..|.|||+.-...+ ....+|+..|..++|+.. .++|++||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 3679999999999999997421100 012357777778888875 458999999999999
Q ss_pred EeCCccceeeeecccCcCeEEEEECC-CCCeEEEEeCCCcEEEEcCCCCceE-EEEcCCCCcccCeEEEEEcCCC-CEEE
Q 016187 176 WNADRAAYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDATLRVWNPKSGENI-HVIRGHPYHTEGLTCLTISADS-TLAL 252 (394)
Q Consensus 176 w~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~-~~l~ 252 (394)
||+.++++...+..|...|.+++|+| ....|++|+.|++|++.|.+...+. ..++ ....|-.++|.|.. ..++
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk----~~g~VEkv~w~~~se~~f~ 346 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK----FDGEVEKVAWDPHSENSFF 346 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE----eccceEEEEecCCCceeEE
Confidence 99999999999999999999999999 5678999999999999999853221 1222 23457788998865 4667
Q ss_pred EEeCCCcEEEEECCCC-cEEEEeccCCCCEEEEEECCCCC-eEEEEeCCCcEEEEeCCCCCcceeccCCC---CEEEEEE
Q 016187 253 SGSKDGSVHMVNITTG-KVVSSLVSHTDSIECIGFSRSSP-WAATGSMDQKLIIWDLQHSLPRSTCDHED---GVTCLMW 327 (394)
Q Consensus 253 ~g~~dg~i~i~d~~~~-~~~~~~~~h~~~i~~v~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---~v~~~~~ 327 (394)
++..||+++-+|+++. +++.++++|.++|.++.+++.-+ ++++++.|+.+++|++....+.....|.. ...|.++
T Consensus 347 ~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~ 426 (463)
T KOG0270|consen 347 VSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFAL 426 (463)
T ss_pred EecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeeccc
Confidence 7889999999999975 89999999999999999998754 68899999999999987665544444432 3456666
Q ss_pred eCCC-CEEEEEeCCCeEEEEECCCCeEE
Q 016187 328 LGTS-KYVVTGCVDGKVRVWDSLSGDCV 354 (394)
Q Consensus 328 ~~~~-~~l~sg~~dg~i~iwd~~~~~~~ 354 (394)
.|+- .+++.|+..+.++|||+.+...+
T Consensus 427 ~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 427 DPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred CCCcceEEEecCccceEEEeecccChhH
Confidence 6654 46778888889999998776554
No 154
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.93 E-value=5.6e-24 Score=177.71 Aligned_cols=288 Identities=24% Similarity=0.412 Sum_probs=218.0
Q ss_pred eeeccCCcEEEEEEcC----CCCcEEEEecCCCeEEEEEcCCCeeeEee-----cCcccCEEEEEEcCCC----CEEEEE
Q 016187 59 IFSGHSDEVYSVACSP----TDATLVATGGGDDKGFFWRINQGDWASEI-----QGHKDSVSSLAFSMDG----QLLASG 125 (394)
Q Consensus 59 ~~~~h~~~v~~~~~~p----~~~~~lasg~~d~~v~~w~~~~~~~~~~~-----~~h~~~V~~v~~s~~g----~~l~t~ 125 (394)
...+|+.+++.++|.+ +....+||.|+ .++.+|+....-.++.+ ..|.+.-+.++|+-+- .+||.|
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 3457889999999985 34678888776 56778886554333332 2377888999998643 478999
Q ss_pred eCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCC-CEEEEecCCCeEEEEeCCccceeeee---cccCcCeEEEEECC
Q 016187 126 GLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNADRAAYLNMF---SGHGSSVTCGDFTP 201 (394)
Q Consensus 126 s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~d~~i~iw~~~~~~~~~~~---~~h~~~v~~~~~~~ 201 (394)
+.-|.|+|.|+.+++....+.+|...|+.+.++|.. ++++++|.|.+|++|++++..++..+ .||.+.|.++.|++
T Consensus 112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~ 191 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL 191 (385)
T ss_pred cceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC
Confidence 999999999999999999999999999999999976 58899999999999999999888765 57999999999999
Q ss_pred CCCeEEEEeCCCcEEEEcCCCCceEEEEc-------------------------CCCCcccCeEEEEEcCCCCEEEEEeC
Q 016187 202 DGKTICTGSDDATLRVWNPKSGENIHVIR-------------------------GHPYHTEGLTCLTISADSTLALSGSK 256 (394)
Q Consensus 202 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-------------------------~~~~~~~~i~~~~~~~~~~~l~~g~~ 256 (394)
+|.+++|++.|.+|++|++...+-...++ ....|...|-|+.|- |.++++-+-
T Consensus 192 ~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSksc 269 (385)
T KOG1034|consen 192 DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSC 269 (385)
T ss_pred CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeeccc
Confidence 99999999999999999987432111111 011233334444333 568889888
Q ss_pred CCcEEEEECCC-C-------------cEEEEeccCCCCEEEEE--ECCCCCeEEEEeCCCcEEEEeCCCCCcce--ecc-
Q 016187 257 DGSVHMVNITT-G-------------KVVSSLVSHTDSIECIG--FSRSSPWAATGSMDQKLIIWDLQHSLPRS--TCD- 317 (394)
Q Consensus 257 dg~i~i~d~~~-~-------------~~~~~~~~h~~~i~~v~--~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~- 317 (394)
++.|..|.... + ..+..+......|.-+. |.|-+++||.|...|++.+||++...+.. ...
T Consensus 270 enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~ 349 (385)
T KOG1034|consen 270 ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTH 349 (385)
T ss_pred CceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEe
Confidence 99999998721 1 12233333344455544 56778899999999999999998765432 112
Q ss_pred --CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 016187 318 --HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSL 349 (394)
Q Consensus 318 --~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~ 349 (394)
....|...+|+.++..|+..+.|+.|--||..
T Consensus 350 s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 350 SKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 23458889999999999999999999999853
No 155
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.92 E-value=4.8e-23 Score=171.82 Aligned_cols=272 Identities=20% Similarity=0.324 Sum_probs=207.1
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc------------eEEEEe-cCCCCEEEEEEc-------CCCCEEEEecC
Q 016187 110 VSSLAFSMDGQLLASGGLDGLVQIWDPSSGN------------LKCTLE-GPGGGVEWVSWH-------PRGHIVLAGSE 169 (394)
Q Consensus 110 V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~------------~~~~~~-~~~~~v~~~~~~-------~~~~~l~~~s~ 169 (394)
...+.|||||..|++-+.|..+++|++...- ....+. .....|...+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 3467899999999999999999999875211 011111 123456666665 56779999999
Q ss_pred CCeEEEEeCCccceeeeecc--cCcC---eEEEEECCCCCeEEEEeCCCcEEEEcC-CCCceEEEE----cCCCCcccCe
Q 016187 170 DSTVWMWNADRAAYLNMFSG--HGSS---VTCGDFTPDGKTICTGSDDATLRVWNP-KSGENIHVI----RGHPYHTEGL 239 (394)
Q Consensus 170 d~~i~iw~~~~~~~~~~~~~--h~~~---v~~~~~~~~~~~l~s~~~dg~i~vwd~-~~~~~~~~~----~~~~~~~~~i 239 (394)
+.-|.+||.-+++....+.+ |... ..+++|+|||.+|++|. ...||++|+ +.|...... ++......-+
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 99999999998887766554 3333 35899999999998875 688999999 555432111 1111224457
Q ss_pred EEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeC-CCcEEEEeCCCCCc-ce-e
Q 016187 240 TCLTISADS-TLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSM-DQKLIIWDLQHSLP-RS-T 315 (394)
Q Consensus 240 ~~~~~~~~~-~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~-dg~i~iwd~~~~~~-~~-~ 315 (394)
.|++++|.. +.++.|+...++-|+.-..+.++..+-+|.+.|+.+.|.++|..|.+|+. |..|..||++.... .. .
T Consensus 211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L 290 (406)
T KOG2919|consen 211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYAL 290 (406)
T ss_pred eeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhh
Confidence 899999955 58999999999999988888999999999999999999999999999875 77899999986421 11 1
Q ss_pred ccCCCCE---EEEEEeCCCCEEEEEeCCCeEEEEECCC-CeEEEEeecccCceeEEEEccCCCEEEEEeCC
Q 016187 316 CDHEDGV---TCLMWLGTSKYVVTGCVDGKVRVWDSLS-GDCVRTFSGHRDAIQAISVSAHQDFLVSVSLD 382 (394)
Q Consensus 316 ~~~~~~v---~~~~~~~~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d 382 (394)
..|.... .-....|++++|++|+.||.|++||+.. +..+..+..|...|+.++++|--+++|+++..
T Consensus 291 ~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 291 ERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred hhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 2232211 1233458899999999999999999988 67688888899999999999999999988865
No 156
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.92 E-value=2.4e-23 Score=173.95 Aligned_cols=285 Identities=20% Similarity=0.301 Sum_probs=218.0
Q ss_pred ecCcccCEEEEEEcC-----CCCEEEEEeCCCcEEEEeCCCCc---eEEEEe--cCCCCEEEEEEcCC----CCEEEEec
Q 016187 103 IQGHKDSVSSLAFSM-----DGQLLASGGLDGLVQIWDPSSGN---LKCTLE--GPGGGVEWVSWHPR----GHIVLAGS 168 (394)
Q Consensus 103 ~~~h~~~V~~v~~s~-----~g~~l~t~s~d~~i~vwd~~~~~---~~~~~~--~~~~~v~~~~~~~~----~~~l~~~s 168 (394)
...|+.+|..++|.+ +-+.+||++.+ .+.+|.....- .+..+. .+.+....++|.-+ +.++++|+
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 467899999999984 23467777654 68888765432 222322 35567777888754 34788888
Q ss_pred CCCeEEEEeCCccceeeeecccCcCeEEEEECCCC-CeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCC
Q 016187 169 EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG-KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD 247 (394)
Q Consensus 169 ~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 247 (394)
.-|.|++.|+.++++...+.+|+..|+.+.|.|+. ++++++|.|.+||+|++++..++..+.+...|.+.|.++.|+++
T Consensus 113 ~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~ 192 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLD 192 (385)
T ss_pred ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCC
Confidence 99999999999999999999999999999999964 78899999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEE----------------------------EEeccCCCCEEEEEECCCCCeEEEEeCC
Q 016187 248 STLALSGSKDGSVHMVNITTGKVV----------------------------SSLVSHTDSIECIGFSRSSPWAATGSMD 299 (394)
Q Consensus 248 ~~~l~~g~~dg~i~i~d~~~~~~~----------------------------~~~~~h~~~i~~v~~~~~~~~l~s~s~d 299 (394)
+.++++++.|.+|++|++...+.. .+-.-|...|.|+.|- +.++++=|-+
T Consensus 193 gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSksce 270 (385)
T KOG1034|consen 193 GDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCE 270 (385)
T ss_pred CCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccC
Confidence 999999999999999999732110 0112366666666665 4689999999
Q ss_pred CcEEEEeCCCCC-------cc----eec----cCCCCEEEEEE--eCCCCEEEEEeCCCeEEEEECCCCeEEE--Eee--
Q 016187 300 QKLIIWDLQHSL-------PR----STC----DHEDGVTCLMW--LGTSKYVVTGCVDGKVRVWDSLSGDCVR--TFS-- 358 (394)
Q Consensus 300 g~i~iwd~~~~~-------~~----~~~----~~~~~v~~~~~--~~~~~~l~sg~~dg~i~iwd~~~~~~~~--~~~-- 358 (394)
+.|..|...+.. +. ... .....+.-+.| .+-+++||.|...|+|++||+....... ++.
T Consensus 271 naI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s 350 (385)
T KOG1034|consen 271 NAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHS 350 (385)
T ss_pred ceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEec
Confidence 999999862110 00 000 01122334443 4557899999999999999998765532 232
Q ss_pred cccCceeEEEEccCCCEEEEEeCCCcEEEEec
Q 016187 359 GHRDAIQAISVSAHQDFLVSVSLDGTARVFEI 390 (394)
Q Consensus 359 ~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~ 390 (394)
.-...|...+|+.|+..|+.+++|++|--||.
T Consensus 351 ~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 351 KSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred cccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 22456899999999999999999999999985
No 157
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=3.6e-23 Score=170.54 Aligned_cols=246 Identities=27% Similarity=0.408 Sum_probs=199.0
Q ss_pred eeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCC---CCEEEEEeCCCcEEEEeC
Q 016187 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD---GQLLASGGLDGLVQIWDP 136 (394)
Q Consensus 60 ~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~---g~~l~t~s~d~~i~vwd~ 136 (394)
-.+|+-.|..+.|-|-+..+|.|++-|.+++|||.++.+....+. -.+.|++-++||= ..++|+|..+-+|++.|+
T Consensus 97 ~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi 175 (397)
T KOG4283|consen 97 ENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDI 175 (397)
T ss_pred CccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEec
Confidence 357888999999999888899999999999999999877666665 4677888889884 347888889999999999
Q ss_pred CCCceEEEEecCCCCEEEEEEcCCCC-EEEEecCCCeEEEEeCCcc-cee--------------eeecccCcCeEEEEEC
Q 016187 137 SSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRA-AYL--------------NMFSGHGSSVTCGDFT 200 (394)
Q Consensus 137 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~d~~i~iw~~~~~-~~~--------------~~~~~h~~~v~~~~~~ 200 (394)
.+|...+++.+|.+.|.++.|+|... .|++|+.||.|++||++.. .+. +.-..|.+.|..++|.
T Consensus 176 ~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~t 255 (397)
T KOG4283|consen 176 ASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWT 255 (397)
T ss_pred cCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeec
Confidence 99999999999999999999999876 6789999999999998753 221 2234678889999999
Q ss_pred CCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCccc---CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccC
Q 016187 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE---GLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSH 277 (394)
Q Consensus 201 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h 277 (394)
.++.++++++.|..+++|+..+|+....-.+...+.. .-..+. +.+...++---.++++.++++-++..+..+..|
T Consensus 256 Sd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h 334 (397)
T KOG4283|consen 256 SDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH 334 (397)
T ss_pred ccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeecc
Confidence 9999999999999999999988864321111111111 111122 334444444455699999999999999999999
Q ss_pred CCCEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 016187 278 TDSIECIGFSRSSPWAATGSMDQKLIIWDL 307 (394)
Q Consensus 278 ~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~ 307 (394)
-..|.|.++-|+-+.+.+++.|+.+..|-.
T Consensus 335 ~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 335 LKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred cceeeEEeecCchhhhhccccCCccccccc
Confidence 999999999999999999999999999975
No 158
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.92 E-value=1.5e-23 Score=170.19 Aligned_cols=301 Identities=18% Similarity=0.258 Sum_probs=206.7
Q ss_pred CCCCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeec-CcccCEEEEEEcCCCCEEEEEeCCCc
Q 016187 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQ-GHKDSVSSLAFSMDGQLLASGGLDGL 130 (394)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~-~h~~~V~~v~~s~~g~~l~t~s~d~~ 130 (394)
.|+++..++++|.+.|+++.|--+ . +|.+|..-|.+++|.+.+......++ .|...|+.+.--|+ ..|.|-+.|..
T Consensus 2 ~pPdP~fvLRp~~~~v~s~~fqa~-~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~ 78 (323)
T KOG0322|consen 2 VPPDPFFVLRPHSSSVTSVLFQAN-E-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPL 78 (323)
T ss_pred CCCCCeeEeccccchheehhhccc-h-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCce
Confidence 367788899999999999999754 3 36689999999999999988888888 57889999999887 57789999999
Q ss_pred EEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCC-eEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEE
Q 016187 131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS-TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG 209 (394)
Q Consensus 131 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~-~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 209 (394)
+.+|++.-+..... |.=.++++.|.+.. +...+... .+..|+-+.... .| .--+
T Consensus 79 L~lw~ia~s~~i~i---~Si~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde-----~h---------------~~D~ 133 (323)
T KOG0322|consen 79 LILWTIAYSAFISI---HSIVVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDE-----TH---------------KQDG 133 (323)
T ss_pred EEEEEccCcceEEE---eeeeccccccccce--eccCCCcchhheecCCcccch-----hh---------------hhcc
Confidence 99999876554322 22223334443321 11111111 000111000000 00 0001
Q ss_pred eCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcC-CC--CEEEEEeCCCcEEEEECCCC----------cEEEEecc
Q 016187 210 SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-DS--TLALSGSKDGSVHMVNITTG----------KVVSSLVS 276 (394)
Q Consensus 210 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~--~~l~~g~~dg~i~i~d~~~~----------~~~~~~~~ 276 (394)
+.--.+++=|-... ...+.++|..+.. ++ -++++|.++|.+.+||+.++ +.......
T Consensus 134 g~~tqv~i~dd~~~----------~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~as 203 (323)
T KOG0322|consen 134 GDTTQVQIADDSER----------SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNAS 203 (323)
T ss_pred CccceeEccCchhc----------cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhh
Confidence 11111222221100 0122344444222 12 25667788888888888876 33334456
Q ss_pred CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc----c-eeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Q 016187 277 HTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLP----R-STCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSG 351 (394)
Q Consensus 277 h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~----~-~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~ 351 (394)
|..++.++.+.+....=++|+.+..+..|++..... + .....+.+|..+..-||++.+||++.|++||||+.++.
T Consensus 204 h~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl 283 (323)
T KOG0322|consen 204 HKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL 283 (323)
T ss_pred ccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC
Confidence 899999999998766677888888999999865421 1 12223456788889999999999999999999999999
Q ss_pred eEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEec
Q 016187 352 DCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEI 390 (394)
Q Consensus 352 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~ 390 (394)
..+..++.|++.|++++|+|+.+.+|++|.|++|.+|++
T Consensus 284 ~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 284 NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999999999999999986
No 159
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=4e-24 Score=204.80 Aligned_cols=279 Identities=18% Similarity=0.357 Sum_probs=213.5
Q ss_pred EEEEcCCCC-EEEEEe----------CCCcEEEEeCC--CCc----eEEEEecCCCCEEEEEEcCCCCE----EEEecCC
Q 016187 112 SLAFSMDGQ-LLASGG----------LDGLVQIWDPS--SGN----LKCTLEGPGGGVEWVSWHPRGHI----VLAGSED 170 (394)
Q Consensus 112 ~v~~s~~g~-~l~t~s----------~d~~i~vwd~~--~~~----~~~~~~~~~~~v~~~~~~~~~~~----l~~~s~d 170 (394)
.++|||.+. +|++|. .+.++-||.+. +.. ....+ ......+.++|.+.+.. ++.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~-~s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL-QSSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc-cccccceeeeecccCCCccceeeccccC
Confidence 467888875 444442 34455565443 222 11111 12346788999987654 8888899
Q ss_pred CeEEEEeCCcc------ceeeeecccCcCeEEEEECCCC-CeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEE
Q 016187 171 STVWMWNADRA------AYLNMFSGHGSSVTCGDFTPDG-KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLT 243 (394)
Q Consensus 171 ~~i~iw~~~~~------~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~ 243 (394)
|.|.+|+.... ..+..+..|.+.|..+.|++.+ +.||+|+.||.|.|||+...+...... .....+.|.+++
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~ls 168 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLS 168 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEec
Confidence 99999997642 3456678899999999999954 599999999999999998755443332 223456799999
Q ss_pred EcCC-CCEEEEEeCCCcEEEEECCCCcEEEEeccCCC--CEEEEEECCCCC-eEEEEeCCC---cEEEEeCCCCC-cc-e
Q 016187 244 ISAD-STLALSGSKDGSVHMVNITTGKVVSSLVSHTD--SIECIGFSRSSP-WAATGSMDQ---KLIIWDLQHSL-PR-S 314 (394)
Q Consensus 244 ~~~~-~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~--~i~~v~~~~~~~-~l~s~s~dg---~i~iwd~~~~~-~~-~ 314 (394)
|+.. .++|++++.+|+..|||++..+.+-.+..+.. .+..++|+|+.. .+++++.|. .|.+||++... +. .
T Consensus 169 WNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~ 248 (1049)
T KOG0307|consen 169 WNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKI 248 (1049)
T ss_pred cchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhh
Confidence 9875 56778889999999999999988877766544 477899999864 466665554 58999997642 22 2
Q ss_pred eccCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCC-EEEEEeCCCcEEEEeccC
Q 016187 315 TCDHEDGVTCLMWLGTS-KYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQD-FLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 315 ~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~dg~i~iw~~~~ 392 (394)
...|..+|.++.|.+.+ .+|++++.|++|.+|+..+++.+..+....+.+..+.|.|... .|+.++-||.|-||.+..
T Consensus 249 ~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 249 LEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred hcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 34799999999999876 8999999999999999999999999998889999999999776 788889999999998753
No 160
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=9e-24 Score=182.98 Aligned_cols=210 Identities=21% Similarity=0.362 Sum_probs=170.4
Q ss_pred eccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCC
Q 016187 61 SGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD-GQLLASGGLDGLVQIWDPSSG 139 (394)
Q Consensus 61 ~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~-g~~l~t~s~d~~i~vwd~~~~ 139 (394)
.+|++.|.+++|+..-.++|||||.|.+|++||+.++++..++..|.+.|.+++|+|. ..+|++|+.|++|.+.|.+..
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~ 319 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP 319 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence 3799999999999877789999999999999999999999999999999999999986 478999999999999998843
Q ss_pred ceEEEEecCCCCEEEEEEcCCC-CEEEEecCCCeEEEEeCCcc-ceeeeecccCcCeEEEEECCC-CCeEEEEeCCCcEE
Q 016187 140 NLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTPD-GKTICTGSDDATLR 216 (394)
Q Consensus 140 ~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~d~~i~iw~~~~~-~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~ 216 (394)
......-...+.|..++|.|.. +.++++..||+++-+|.+.. +++..+++|.++|.++.+++. -.++++++.|+.|+
T Consensus 320 ~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vk 399 (463)
T KOG0270|consen 320 SNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVK 399 (463)
T ss_pred cccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEE
Confidence 2222222245679999999975 47788889999999999875 888999999999999999874 45789999999999
Q ss_pred EEcCCCCceEEEEcCCCCcccCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEE
Q 016187 217 VWNPKSGENIHVIRGHPYHTEGLTCLTISADST-LALSGSKDGSVHMVNITTGKVV 271 (394)
Q Consensus 217 vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~g~~dg~i~i~d~~~~~~~ 271 (394)
+|++..... .....+.+.-....|.++.|+-. .++.|+..+.+++||+.+...+
T Consensus 400 lw~~~~~~~-~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 400 LWKFDVDSP-KSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred EEeecCCCC-cccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 999865433 22233333334466777777654 5667888889999999876544
No 161
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.91 E-value=6.4e-23 Score=174.32 Aligned_cols=172 Identities=24% Similarity=0.498 Sum_probs=148.3
Q ss_pred CCCCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeE---eecCcccCEEEEEEcCCC-CEEEEEeC
Q 016187 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWAS---EIQGHKDSVSSLAFSMDG-QLLASGGL 127 (394)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~---~~~~h~~~V~~v~~s~~g-~~l~t~s~ 127 (394)
....+...+.+|.++-|+|.|||.....|+||..-+.|++|...++.+.. .+.+|+..|..++|||.. ..||+||.
T Consensus 199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~ 278 (440)
T KOG0302|consen 199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSC 278 (440)
T ss_pred cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeec
Confidence 44567888999999999999999655567888888999999999888763 578899999999999965 58999999
Q ss_pred CCcEEEEeCCCCceE--EEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCc---cceeeeecccCcCeEEEEECCC
Q 016187 128 DGLVQIWDPSSGNLK--CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR---AAYLNMFSGHGSSVTCGDFTPD 202 (394)
Q Consensus 128 d~~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~---~~~~~~~~~h~~~v~~~~~~~~ 202 (394)
|++|+|||+..+... ...+.|.+.|+-++|+..-.+|++|+.||+++|||+++ ++.+..|+.|..+|+++.|+|.
T Consensus 279 DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~ 358 (440)
T KOG0302|consen 279 DGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPH 358 (440)
T ss_pred CceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccc
Confidence 999999999988322 22377889999999999988999999999999999875 5667889999999999999994
Q ss_pred -CCeEEEEeCCCcEEEEcCCCC
Q 016187 203 -GKTICTGSDDATLRVWNPKSG 223 (394)
Q Consensus 203 -~~~l~s~~~dg~i~vwd~~~~ 223 (394)
...|++++.|.+|.+||+...
T Consensus 359 e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 359 EDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred cCceEEeccCCCcEEEEEeecc
Confidence 567889999999999998643
No 162
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=6e-21 Score=178.56 Aligned_cols=285 Identities=20% Similarity=0.318 Sum_probs=213.3
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC--Cc--eEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcc
Q 016187 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS--GN--LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA 181 (394)
Q Consensus 106 h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~ 181 (394)
|...+++.++||.++++|+|..||.|.+|.-.. .. ....+.-|...|.+++|+++|.+|++|+..+.+.+|.+.++
T Consensus 204 Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~ 283 (792)
T KOG1963|consen 204 HTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETG 283 (792)
T ss_pred hcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCC
Confidence 455678999999999999999999999996432 11 22345668889999999999999999999999999999988
Q ss_pred ceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCc--------ccCeEEEEEcCCCCEEEE
Q 016187 182 AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYH--------TEGLTCLTISADSTLALS 253 (394)
Q Consensus 182 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~--------~~~i~~~~~~~~~~~l~~ 253 (394)
+ .+.++.-+++|..+.++||+.+.+....|..|.+-...+......+.+.... ..-.+.+.++|-.+.++-
T Consensus 284 ~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vl 362 (792)
T KOG1963|consen 284 K-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVL 362 (792)
T ss_pred C-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceee
Confidence 8 5556667889999999999999999999999999987655443333332111 233567888997777888
Q ss_pred EeCCCcEEEEECCCCcEEEEecc-----------CCCCEEEEEECCCCCeEEEEe--------CCC--cEEEEeCCCCCc
Q 016187 254 GSKDGSVHMVNITTGKVVSSLVS-----------HTDSIECIGFSRSSPWAATGS--------MDQ--KLIIWDLQHSLP 312 (394)
Q Consensus 254 g~~dg~i~i~d~~~~~~~~~~~~-----------h~~~i~~v~~~~~~~~l~s~s--------~dg--~i~iwd~~~~~~ 312 (394)
.+..|.|.+||+.+.+.+..+.. +.-.+.+++.+..+.|++|.- .|| .+|+|-......
T Consensus 363 n~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~k 442 (792)
T KOG1963|consen 363 NGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSK 442 (792)
T ss_pred cCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcc
Confidence 88999999999988776655431 233577888888899999864 233 477886543222
Q ss_pred c------eeccCCCCEEEEEEeC-CCC-EEEEEeCCCeEEEEECCC----------CeEEEEeecccCceeEEEEccCCC
Q 016187 313 R------STCDHEDGVTCLMWLG-TSK-YVVTGCVDGKVRVWDSLS----------GDCVRTFSGHRDAIQAISVSAHQD 374 (394)
Q Consensus 313 ~------~~~~~~~~v~~~~~~~-~~~-~l~sg~~dg~i~iwd~~~----------~~~~~~~~~h~~~v~~l~~~~~~~ 374 (394)
. ....|...+...++.+ ... ..++++.||.++||-... +.|...-..|..++++++|+.||.
T Consensus 443 t~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGs 522 (792)
T KOG1963|consen 443 TFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGS 522 (792)
T ss_pred eeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCc
Confidence 1 1235776655555543 333 899999999999997621 233333335889999999999995
Q ss_pred EEEEEeCCCcEEEEeccC
Q 016187 375 FLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 375 ~l~s~s~dg~i~iw~~~~ 392 (394)
. +++|.|++|.+||...
T Consensus 523 l-la~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 523 L-LAVSFDDTITIWDYDT 539 (792)
T ss_pred E-EEEecCCEEEEecCCC
Confidence 4 5688899999999765
No 163
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=2.1e-22 Score=180.44 Aligned_cols=271 Identities=21% Similarity=0.296 Sum_probs=203.4
Q ss_pred EeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCC-EEEEecCCCeEEEEeCC
Q 016187 101 SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNAD 179 (394)
Q Consensus 101 ~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~d~~i~iw~~~ 179 (394)
..++||++.|+++...|.|.+|++|+.||+|+||.+.+|+++.++.. .+.|.+++|+|.+. .+++++....+.+.+..
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~ 472 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECVLIVNPI 472 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCceEEeCcc
Confidence 45789999999999999999999999999999999999999888763 45799999999876 23344444446666543
Q ss_pred ccceeeeecccCcCeEEEEECCCCCeEEEE----eCCCcEEEEcCCCCce----EEEEcCCCCcccCeEEEEEcCCCCEE
Q 016187 180 RAAYLNMFSGHGSSVTCGDFTPDGKTICTG----SDDATLRVWNPKSGEN----IHVIRGHPYHTEGLTCLTISADSTLA 251 (394)
Q Consensus 180 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~----~~dg~i~vwd~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l 251 (394)
-+..+... +....|+++ ..++.+..|.-...+. +...- .|...|+.+.|+..|.||
T Consensus 473 ~G~~~e~~-------------~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I---~~~k~i~~vtWHrkGDYl 536 (733)
T KOG0650|consen 473 FGDRLEVG-------------PTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVI---KHPKSIRQVTWHRKGDYL 536 (733)
T ss_pred ccchhhhc-------------chhhhhhcCCCccCCcccceeechhhhhhhccceEEEE---ecCCccceeeeecCCceE
Confidence 33211110 011122222 2356777886542211 11111 256779999999999999
Q ss_pred EEEeCC---CcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcce-eccCCCCEEEEEE
Q 016187 252 LSGSKD---GSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRS-TCDHEDGVTCLMW 327 (394)
Q Consensus 252 ~~g~~d---g~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~v~~~~~ 327 (394)
++-..+ ..|.|.++...+....|.-..+.|.++.|+|..++|+.++ ...|+|||+....... .......|..++.
T Consensus 537 atV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msi 615 (733)
T KOG0650|consen 537 ATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSI 615 (733)
T ss_pred EEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeee
Confidence 986553 5688888877766555655668899999999999988876 4579999997643322 2333456889999
Q ss_pred eCCCCEEEEEeCCCeEEEEECCC-CeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 328 LGTSKYVVTGCVDGKVRVWDSLS-GDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 328 ~~~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
+|.|.-|+.|+.|+++..+|+.- .+..+++..|...|++|+|++.-++++||+.||++.+|.
T Consensus 616 hp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 616 HPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred cCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 99999999999999999999864 466788999999999999999999999999999999985
No 164
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=6.3e-23 Score=182.81 Aligned_cols=253 Identities=19% Similarity=0.326 Sum_probs=196.4
Q ss_pred eeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCC--------CeeeEeecCcccCEEEEEEcCCCCEEEEEeCC
Q 016187 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ--------GDWASEIQGHKDSVSSLAFSMDGQLLASGGLD 128 (394)
Q Consensus 57 ~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~--------~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d 128 (394)
...+..|.+.|.+++|+|..+ .|++++.|+++++|+++. -+.+.++++|.++|.|+++++.+..+++|+-|
T Consensus 287 k~tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~D 365 (577)
T KOG0642|consen 287 KFTLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGID 365 (577)
T ss_pred eeeeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccC
Confidence 345678999999999999765 578999999999999832 24677899999999999999999999999999
Q ss_pred CcEEEEeCCCC----------ceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccce--eeeecccCcCeEE
Q 016187 129 GLVQIWDPSSG----------NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY--LNMFSGHGSSVTC 196 (394)
Q Consensus 129 ~~i~vwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~--~~~~~~h~~~v~~ 196 (394)
|+|+.|++... .....+.||.+.++.+++|+....|++++.||+++.|+...... ......|. ...+
T Consensus 366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g-~Pls 444 (577)
T KOG0642|consen 366 GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHG-YPLS 444 (577)
T ss_pred ceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccC-Ccce
Confidence 99999965411 23456789999999999999999999999999999999876554 11112222 3344
Q ss_pred EEECCCC-CeEEEEeCCCcEEEEcCCCCceEEEEcCCC----CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE
Q 016187 197 GDFTPDG-KTICTGSDDATLRVWNPKSGENIHVIRGHP----YHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVV 271 (394)
Q Consensus 197 ~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~ 271 (394)
++|.... ...++...-+.-.+.++...+.+..+.... .....+.-+...|.+.+.+++..|+.|+++|..+++++
T Consensus 445 vd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l 524 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKIL 524 (577)
T ss_pred EeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccc
Confidence 5554322 222333333444455555555554443211 11234677888999999999999999999999999999
Q ss_pred EEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC
Q 016187 272 SSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSL 311 (394)
Q Consensus 272 ~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~ 311 (394)
.....|...++++++.|++.+|++++.|+.+++|.+....
T Consensus 525 ~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 525 HSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred hheeeccceecceeecCCCceEEeecCCceeehhhccchh
Confidence 9999999999999999999999999999999999886543
No 165
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.90 E-value=2.4e-22 Score=176.45 Aligned_cols=260 Identities=17% Similarity=0.291 Sum_probs=203.7
Q ss_pred EEEEEEcCCCCcEEEEecCCCeEEEEEcCCC--ee--eEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceE
Q 016187 67 VYSVACSPTDATLVATGGGDDKGFFWRINQG--DW--ASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK 142 (394)
Q Consensus 67 v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~--~~--~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~ 142 (394)
++++.|.......+|+.++|..+++|.-... +. +..+.|. .-.|++......|+++|+..+.|+|||+....+.
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~h 114 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIH 114 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHh
Confidence 7888998755456788889999999985332 22 2233333 3344544445589999999999999999966667
Q ss_pred EEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeeccc-CcCeEEEEECCCCCe-EEEEeCCCcEEEEcC
Q 016187 143 CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH-GSSVTCGDFTPDGKT-ICTGSDDATLRVWNP 220 (394)
Q Consensus 143 ~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~-l~s~~~dg~i~vwd~ 220 (394)
..+++|...|+++.++-...+|++++..|.|.+..+.++.....+... ...|.-+.|+|..+. |.+++.+|.|.+||+
T Consensus 115 r~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv 194 (673)
T KOG4378|consen 115 RFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDV 194 (673)
T ss_pred hhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEec
Confidence 788999999999999999999999999999999999888766665433 455668899997664 568899999999999
Q ss_pred CCCceEEEEcCCCCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCC
Q 016187 221 KSGENIHVIRGHPYHTEGLTCLTISADS-TLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMD 299 (394)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~d 299 (394)
......+.+. ..|..+...++|+|.+ .++++-+.|..|.+||.++.+....+. ...+..+++|+++|.+|+.|...
T Consensus 195 ~g~sp~~~~~--~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~ 271 (673)
T KOG4378|consen 195 QGMSPIFHAS--EAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSK 271 (673)
T ss_pred cCCCcccchh--hhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCC
Confidence 7665544332 3466777788999955 577788999999999999776665554 46789999999999999999999
Q ss_pred CcEEEEeCCCCC-cc-eeccCCCCEEEEEEeCCC
Q 016187 300 QKLIIWDLQHSL-PR-STCDHEDGVTCLMWLGTS 331 (394)
Q Consensus 300 g~i~iwd~~~~~-~~-~~~~~~~~v~~~~~~~~~ 331 (394)
|.|..||++... +. ....|...|++++|-+..
T Consensus 272 G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 272 GELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred ceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 999999998643 32 234688889999998764
No 166
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.90 E-value=3.4e-22 Score=170.87 Aligned_cols=234 Identities=22% Similarity=0.387 Sum_probs=181.6
Q ss_pred CCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCC-------eeeEeecCcccCEEEEEEcCCC-CEEEEE
Q 016187 54 DDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQG-------DWASEIQGHKDSVSSLAFSMDG-QLLASG 125 (394)
Q Consensus 54 ~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~-------~~~~~~~~h~~~V~~v~~s~~g-~~l~t~ 125 (394)
+...-.+.||+++|..++|+|.+.+.|||||.|.+++||.+..+ +.+..|.||...|--|+|+|.- +.|+++
T Consensus 71 d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsa 150 (472)
T KOG0303|consen 71 DASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSA 150 (472)
T ss_pred CCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhc
Confidence 44556688999999999999998899999999999999998654 4567789999999999999976 678999
Q ss_pred eCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCc-CeEEEEECCCCC
Q 016187 126 GLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGS-SVTCGDFTPDGK 204 (394)
Q Consensus 126 s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~-~v~~~~~~~~~~ 204 (394)
+.|.+|.+|++.+|+.+.++. |.+.|.+++|+.+|.++++.+.|..|++||.++++.+..-.+|.+ ....+.|..+|.
T Consensus 151 g~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~ 229 (472)
T KOG0303|consen 151 GSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK 229 (472)
T ss_pred cCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc
Confidence 999999999999999988888 899999999999999999999999999999999998887777754 445667888888
Q ss_pred eEEEEe---CCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCcEE----EEecc
Q 016187 205 TICTGS---DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLA-LSGSKDGSVHMVNITTGKVV----SSLVS 276 (394)
Q Consensus 205 ~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~g~~dg~i~i~d~~~~~~~----~~~~~ 276 (394)
.+-||. .+.++-+||...-+....+.... ...+|.-=-+.++.+++ ++|-.|+.|+.|.+....+. .++.
T Consensus 230 i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~- 307 (472)
T KOG0303|consen 230 IFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFS- 307 (472)
T ss_pred eeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccc-
Confidence 555543 47889999986544321111111 23455555677777655 56778999999999876532 2222
Q ss_pred CCCCEEEEEECCCC
Q 016187 277 HTDSIECIGFSRSS 290 (394)
Q Consensus 277 h~~~i~~v~~~~~~ 290 (394)
..++=..+.|-|..
T Consensus 308 S~epQRG~g~mPKR 321 (472)
T KOG0303|consen 308 SKEPQRGMGFMPKR 321 (472)
T ss_pred cCCccccccccccc
Confidence 23344455665543
No 167
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.90 E-value=4.3e-22 Score=173.25 Aligned_cols=248 Identities=22% Similarity=0.341 Sum_probs=191.6
Q ss_pred eEEEEecCCCCEEEEEEcCCCC--EEEEecCCCeEEEEeCCcc----ceeeeecccCcCeEEEEECC-CCCeEEEEeCCC
Q 016187 141 LKCTLEGPGGGVEWVSWHPRGH--IVLAGSEDSTVWMWNADRA----AYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDA 213 (394)
Q Consensus 141 ~~~~~~~~~~~v~~~~~~~~~~--~l~~~s~d~~i~iw~~~~~----~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg 213 (394)
.....+-+.+.|++++|||..+ ++++|..-|+|-+||+.+. ..+..+..|+.+|.++.|+| +-..+++.|.||
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence 3344556778999999999754 7889999999999999532 33566788999999999999 556899999999
Q ss_pred cEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE-EEEeccCCCCEEEEEECCCCC-
Q 016187 214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV-VSSLVSHTDSIECIGFSRSSP- 291 (394)
Q Consensus 214 ~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~-~~~~~~h~~~i~~v~~~~~~~- 291 (394)
+||+-|++.+..-..+... .....+..+.++.+...++.+..=|...+||+++++. ...+..|...|..|+++|..+
T Consensus 258 tiR~~D~~~~i~e~v~s~~-~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~ 336 (498)
T KOG4328|consen 258 TIRLQDFEGNISEEVLSLD-TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPW 336 (498)
T ss_pred eeeeeeecchhhHHHhhcC-ccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCch
Confidence 9999999876432221110 1123456677888888888888888999999998654 666777999999999999876
Q ss_pred eEEEEeCCCcEEEEeCCCCCc-----ceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC----CCeEEEEeeccc-
Q 016187 292 WAATGSMDQKLIIWDLQHSLP-----RSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSL----SGDCVRTFSGHR- 361 (394)
Q Consensus 292 ~l~s~s~dg~i~iwd~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~----~~~~~~~~~~h~- 361 (394)
+|||++.|++++|||++.... .....|...|.++.|+|.+..|++-+.|..|+|||.. .-..+..+. |+
T Consensus 337 ~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~ 415 (498)
T KOG4328|consen 337 FLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNN 415 (498)
T ss_pred heeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccC
Confidence 589999999999999975422 3346788999999999999899999999999999973 222222222 22
Q ss_pred ---C--ceeEEEEccCCCEEEEEeCCCcEEEEec
Q 016187 362 ---D--AIQAISVSAHQDFLVSVSLDGTARVFEI 390 (394)
Q Consensus 362 ---~--~v~~l~~~~~~~~l~s~s~dg~i~iw~~ 390 (394)
. .....+|.|+..+++.|-.-..|-||+-
T Consensus 416 ~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~ 449 (498)
T KOG4328|consen 416 RTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDG 449 (498)
T ss_pred cccccccchhheeCCCccEEEEeccCcceeEEcC
Confidence 1 2345679999999999998888888874
No 168
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.89 E-value=1.5e-21 Score=160.54 Aligned_cols=248 Identities=23% Similarity=0.412 Sum_probs=188.4
Q ss_pred eeeeeccCCcEEEEEEcCCCCcEEEEecCC-------CeEEEEEcCCC---------eeeEeec-CcccCEEEEEEcCCC
Q 016187 57 THIFSGHSDEVYSVACSPTDATLVATGGGD-------DKGFFWRINQG---------DWASEIQ-GHKDSVSSLAFSMDG 119 (394)
Q Consensus 57 ~~~~~~h~~~v~~~~~~p~~~~~lasg~~d-------~~v~~w~~~~~---------~~~~~~~-~h~~~V~~v~~s~~g 119 (394)
..+|..|.++|+.|+-+|.+.++|||.-.+ ..+-||.+... +++..|. .+.+.|.|+.|.|++
T Consensus 56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns 135 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS 135 (370)
T ss_pred hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence 455778999999999999999999997542 23578997543 2333444 456789999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCce-EEEEe-----cCCCCEEEEEEcC--CCCEEEEecCCCeEEEEeCCccceeee-eccc
Q 016187 120 QLLASGGLDGLVQIWDPSSGNL-KCTLE-----GPGGGVEWVSWHP--RGHIVLAGSEDSTVWMWNADRAAYLNM-FSGH 190 (394)
Q Consensus 120 ~~l~t~s~d~~i~vwd~~~~~~-~~~~~-----~~~~~v~~~~~~~--~~~~l~~~s~d~~i~iw~~~~~~~~~~-~~~h 190 (394)
..|++-. |..|.+|++..+.. ...+. .+....++-+|+| +++.+++ ..|++++.||+++.+.... -.+|
T Consensus 136 ~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~~~sI~dAH 213 (370)
T KOG1007|consen 136 DKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKKNNSIEDAH 213 (370)
T ss_pred CeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCcEEEEEccchhhhcchhhhh
Confidence 9998775 88999999987654 33322 2344677788988 5666655 5689999999998765443 3578
Q ss_pred CcCeEEEEECCCCC-eEEEEeCCCcEEEEcCCCCc-eEEEEcCCCCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEECCC
Q 016187 191 GSSVTCGDFTPDGK-TICTGSDDATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISAD-STLALSGSKDGSVHMVNITT 267 (394)
Q Consensus 191 ~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~g~~dg~i~i~d~~~ 267 (394)
...|..+.|+|+.+ +|++|+.||.||+||++.-+ .+..+. .|.-.+.++.|+|. ..++++|+.|..+.+|...+
T Consensus 214 gq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~---~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 214 GQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP---GHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred cceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC---CCceEEEEEEecCccceEEEecCCCceeEEEeccc
Confidence 99999999999865 57899999999999998654 333333 35667999999994 67889999999999986532
Q ss_pred C-----------------------------cEEEEeccCCCCEEEEEECCCCCe-EEEEeCCCcEEEEeCCC
Q 016187 268 G-----------------------------KVVSSLVSHTDSIECIGFSRSSPW-AATGSMDQKLIIWDLQH 309 (394)
Q Consensus 268 ~-----------------------------~~~~~~~~h~~~i~~v~~~~~~~~-l~s~s~dg~i~iwd~~~ 309 (394)
- ..+.++..|.+.|++++|+...+| +|+-|.||++.|=.+..
T Consensus 291 vSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 291 VSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred cccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 0 124456779999999999988776 68889999999866543
No 169
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=7.1e-23 Score=196.29 Aligned_cols=243 Identities=23% Similarity=0.373 Sum_probs=197.9
Q ss_pred CcEEEEEEcCCCCc---EEEEecCCCeEEEEEcCC------CeeeEeecCcccCEEEEEEcCCCC-EEEEEeCCCcEEEE
Q 016187 65 DEVYSVACSPTDAT---LVATGGGDDKGFFWRINQ------GDWASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIW 134 (394)
Q Consensus 65 ~~v~~~~~~p~~~~---~lasg~~d~~v~~w~~~~------~~~~~~~~~h~~~V~~v~~s~~g~-~l~t~s~d~~i~vw 134 (394)
...+.|+|.+.+.. +||.|..||.|-+|+... .+.+.+...|++.|..+.|++... .||+|+.||.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 35678899886555 799999999999999754 234566788999999999999775 99999999999999
Q ss_pred eCCCCceEEEE--ecCCCCEEEEEEcCC-CCEEEEecCCCeEEEEeCCccceeeeecccCc--CeEEEEECCCC-CeEEE
Q 016187 135 DPSSGNLKCTL--EGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNADRAAYLNMFSGHGS--SVTCGDFTPDG-KTICT 208 (394)
Q Consensus 135 d~~~~~~~~~~--~~~~~~v~~~~~~~~-~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~--~v~~~~~~~~~-~~l~s 208 (394)
|+++.+.-.+. ....+.|.+++|+.. .++|++++.+|...|||++..+.+-.+..+.. .+..++|+|+. ..|++
T Consensus 145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~ 224 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV 224 (1049)
T ss_pred ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence 99876544433 224578999999986 46789999999999999998877766665544 46789999975 45666
Q ss_pred EeCCC---cEEEEcCCCCc-eEEEEcCCCCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEE
Q 016187 209 GSDDA---TLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISADS-TLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIEC 283 (394)
Q Consensus 209 ~~~dg---~i~vwd~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~ 283 (394)
++.|. .|.+||+|.-. .++.++ .|..+|.++.|++.+ .++++++.|+.|.+|+..+++.+..+....+++..
T Consensus 225 As~dd~~PviqlWDlR~assP~k~~~---~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fd 301 (1049)
T KOG0307|consen 225 ASGDDSAPVIQLWDLRFASSPLKILE---GHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFD 301 (1049)
T ss_pred ecCCCCCceeEeecccccCCchhhhc---ccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceee
Confidence 66553 58999987543 233333 478899999999966 89999999999999999999999999888899999
Q ss_pred EEECCCCC-eEEEEeCCCcEEEEeCCCC
Q 016187 284 IGFSRSSP-WAATGSMDQKLIIWDLQHS 310 (394)
Q Consensus 284 v~~~~~~~-~l~s~s~dg~i~iwd~~~~ 310 (394)
+.|+|..+ .++.++-||+|.||.+...
T Consensus 302 v~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 302 VQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred eeecCCCcchhhhheeccceeeeeeecC
Confidence 99999877 7888999999999998643
No 170
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.1e-21 Score=164.91 Aligned_cols=269 Identities=20% Similarity=0.335 Sum_probs=198.7
Q ss_pred CEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcC--CCCEEEEecCCCeEEEEeCCcccee--eeecccC-cCe
Q 016187 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP--RGHIVLAGSEDSTVWMWNADRAAYL--NMFSGHG-SSV 194 (394)
Q Consensus 120 ~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~s~d~~i~iw~~~~~~~~--~~~~~h~-~~v 194 (394)
..+|++-..|+|++||..+++.+..++++...++.++|.. ..+.+.+|+.||+|++||++..... ..+.++. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5678888899999999999999999999999999999987 4678999999999999999865433 3444555 567
Q ss_pred EEEEECCCCCeEEEEe----CCCcEEEEcCCCCce-EEEEcCCCCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCC
Q 016187 195 TCGDFTPDGKTICTGS----DDATLRVWNPKSGEN-IHVIRGHPYHTEGLTCLTISAD-STLALSGSKDGSVHMVNITTG 268 (394)
Q Consensus 195 ~~~~~~~~~~~l~s~~----~dg~i~vwd~~~~~~-~~~~~~~~~~~~~i~~~~~~~~-~~~l~~g~~dg~i~i~d~~~~ 268 (394)
.|++....++.+++|. .+-.|.+||++..++ +..+. ..|...|+++.|+|. ..+|++|+.||-+.+||++..
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~--eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLN--ESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhh--hhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 7888887888888885 467899999998776 44433 347889999999995 579999999999999999764
Q ss_pred c---EEEEeccCCCCEEEEEECCCC-CeEEEEeCCCcEEEEeCCCCCcceeccC--------------CCCEEEEEEeCC
Q 016187 269 K---VVSSLVSHTDSIECIGFSRSS-PWAATGSMDQKLIIWDLQHSLPRSTCDH--------------EDGVTCLMWLGT 330 (394)
Q Consensus 269 ~---~~~~~~~h~~~i~~v~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~--------------~~~v~~~~~~~~ 330 (394)
. .+.....|...|.++.|...+ +.+.+.+..++..+|++........... ..-|.+. ...+
T Consensus 199 ~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~-~~~~ 277 (376)
T KOG1188|consen 199 NEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEH-SPGD 277 (376)
T ss_pred cchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecc-cCCC
Confidence 2 233334577889999998776 4577888999999999976533221111 0112221 1223
Q ss_pred CCEEEEEeC-CCeEEEEEC---CCCe---EEEEeec-ccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 331 SKYVVTGCV-DGKVRVWDS---LSGD---CVRTFSG-HRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 331 ~~~l~sg~~-dg~i~iwd~---~~~~---~~~~~~~-h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
....+.++. -++..++-+ .++. .+..+.| |...|.++.|...+.++.|||.||.+.+|..+
T Consensus 278 ~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 278 KDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred cceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 344444443 555555533 3333 3345655 67778999999999999999999999999854
No 171
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=4.2e-22 Score=177.59 Aligned_cols=260 Identities=20% Similarity=0.294 Sum_probs=196.8
Q ss_pred EeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC--------CceEEEEecCCCCEEEEEEcCCCCEEEEecCCCe
Q 016187 101 SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS--------GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDST 172 (394)
Q Consensus 101 ~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~ 172 (394)
.++..|.+.|+.++|.|....|++++.|++|++|++.. -+.+.++.+|.++|.|++..+++.++++|+.||+
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 36788999999999999999999999999999999832 1356789999999999999999999999999999
Q ss_pred EEEEeCCcc----------ceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEE
Q 016187 173 VWMWNADRA----------AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCL 242 (394)
Q Consensus 173 i~iw~~~~~----------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~ 242 (394)
|+.|++... .....+.||...++.+++++....|++++.||++|+|+...... ..+.....+ ....++
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~-g~Plsv 445 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEH-GYPLSV 445 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCcccc-CCcceE
Confidence 999965311 22346789999999999999999999999999999999876554 223222112 122334
Q ss_pred EEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEecc-------CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcc-
Q 016187 243 TISADS-TLALSGSKDGSVHMVNITTGKVVSSLVS-------HTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPR- 313 (394)
Q Consensus 243 ~~~~~~-~~l~~g~~dg~i~i~d~~~~~~~~~~~~-------h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~- 313 (394)
.+-... .+.++...-+.--+.++.....+..+.. -...+.-+..+|...+.+++..|+.|+++|..+..+.
T Consensus 446 d~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~ 525 (577)
T KOG0642|consen 446 DRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILH 525 (577)
T ss_pred eeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccch
Confidence 433222 2223222223333333333333322221 1235777889999999999999999999998776443
Q ss_pred eeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccC
Q 016187 314 STCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRD 362 (394)
Q Consensus 314 ~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~ 362 (394)
....|...++++++.|++.+|++|+.||++++|......++.....|+.
T Consensus 526 s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r~ 574 (577)
T KOG0642|consen 526 SMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHRK 574 (577)
T ss_pred heeeccceecceeecCCCceEEeecCCceeehhhccchheeeccccccc
Confidence 4567888999999999999999999999999999988888887777764
No 172
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=4.4e-21 Score=164.04 Aligned_cols=287 Identities=16% Similarity=0.239 Sum_probs=213.4
Q ss_pred EeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC------CceEEEEec-CCCCEEEEEEcCCCCEEEEecCCCeE
Q 016187 101 SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS------GNLKCTLEG-PGGGVEWVSWHPRGHIVLAGSEDSTV 173 (394)
Q Consensus 101 ~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~------~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~s~d~~i 173 (394)
..+.+|.+.|.++.||.++++|++|+.|..+++|.+.. .+.+..... |...|.+++|...+..+++|..++++
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 34678999999999999999999999999999998742 334433333 34789999999999999999999999
Q ss_pred EEEeCCccceeeeecc--cCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCce-EEEEcCCCCcccCeEEEEEcCC-CC
Q 016187 174 WMWNADRAAYLNMFSG--HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN-IHVIRGHPYHTEGLTCLTISAD-ST 249 (394)
Q Consensus 174 ~iw~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~i~~~~~~~~-~~ 249 (394)
...|+++.+.+..+.. ..+.|..+..+|..+.|++.+.+|.|.+||.+..+. ...+-. ........++-|+|. ..
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~-AN~~~~F~t~~F~P~~P~ 208 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLP-ANSGKNFYTAEFHPETPA 208 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeee-cCCCccceeeeecCCCce
Confidence 9999999887766532 234899999999999999999999999999987652 111111 112234566778885 46
Q ss_pred EEEEEeCCCcEEEEECCCCcE-E------EEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC-CCcceeccCCC-
Q 016187 250 LALSGSKDGSVHMVNITTGKV-V------SSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQH-SLPRSTCDHED- 320 (394)
Q Consensus 250 ~l~~g~~dg~i~i~d~~~~~~-~------~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~- 320 (394)
++++++..+-+.+||.+..+. + ..+......-..+.|+|+|..+.+--....-.+||+.. ........|..
T Consensus 209 Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~ 288 (609)
T KOG4227|consen 209 LILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPN 288 (609)
T ss_pred eEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCC
Confidence 788889999999999875431 1 11111111224577999999888776666667788765 33333444433
Q ss_pred ------CEEEEEEeCCCCEEEEEeCCCeEEEEECCC----------C-------------eEEEEeecccCceeEEEEcc
Q 016187 321 ------GVTCLMWLGTSKYVVTGCVDGKVRVWDSLS----------G-------------DCVRTFSGHRDAIQAISVSA 371 (394)
Q Consensus 321 ------~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~----------~-------------~~~~~~~~h~~~v~~l~~~~ 371 (394)
.+.+++|..+. .+++|+.+-.|++|.+.. | +.+..++||...++.|.|+|
T Consensus 289 GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~ 367 (609)
T KOG4227|consen 289 GYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQ 367 (609)
T ss_pred cceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecC
Confidence 24456665554 499999999999997631 1 12345789999999999999
Q ss_pred CCCEEEEEeCCCcEEEEe
Q 016187 372 HQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 372 ~~~~l~s~s~dg~i~iw~ 389 (394)
+..+|+|.|.++.++||.
T Consensus 368 H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 368 HNNLLVSSGVENSFKLWS 385 (609)
T ss_pred CcceEeccchhhheeccc
Confidence 999999999999999996
No 173
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.88 E-value=1.7e-20 Score=169.46 Aligned_cols=194 Identities=19% Similarity=0.267 Sum_probs=141.2
Q ss_pred eEEEEECC-CCCeEEEEeCCCcEEEEcCCCCce-------EEEEcCCCCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEE
Q 016187 194 VTCGDFTP-DGKTICTGSDDATLRVWNPKSGEN-------IHVIRGHPYHTEGLTCLTISAD-STLALSGSKDGSVHMVN 264 (394)
Q Consensus 194 v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~-------~~~~~~~~~~~~~i~~~~~~~~-~~~l~~g~~dg~i~i~d 264 (394)
|+.++|.| |.+.||.++.||.|++|.+..+.. -..+. .|.+.|+++.|+|- ...|++++.|-+|++||
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt---~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILT---IHGEKITSLRFHPLAADVLAVASYDSTIELWD 706 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeee---cccceEEEEEecchhhhHhhhhhccceeeeee
Confidence 66778888 778899999999999999865431 12222 46788999999994 56889999999999999
Q ss_pred CCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceecc---CCCCEEEEEEeCCCCEEEEEeCCC
Q 016187 265 ITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCD---HEDGVTCLMWLGTSKYVVTGCVDG 341 (394)
Q Consensus 265 ~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~sg~~dg 341 (394)
+++++....+.+|++.|..++|||+|+.+|+.+.||+|++|+.++......-+ -...--.+.|.-++++++..+.|.
T Consensus 707 l~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk 786 (1012)
T KOG1445|consen 707 LANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDK 786 (1012)
T ss_pred hhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccc
Confidence 99999999999999999999999999999999999999999987653322111 111223467888999988776654
Q ss_pred ----eEEEEECCCCe--EEEE--eecccCceeEEEEccCCC-EEEEEeCCCcEEEEecc
Q 016187 342 ----KVRVWDSLSGD--CVRT--FSGHRDAIQAISVSAHQD-FLVSVSLDGTARVFEIA 391 (394)
Q Consensus 342 ----~i~iwd~~~~~--~~~~--~~~h~~~v~~l~~~~~~~-~l~s~s~dg~i~iw~~~ 391 (394)
.|.+||..+-. .+.+ +..-.. +.--.+.+|.. ++++|-.|..|.+|.+-
T Consensus 787 ~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps-~LvP~YD~Ds~~lfltGKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 787 SSERQVQMYDAQTLDLRPLYTQVLDVAPS-PLVPHYDYDSNVLFLTGKGDRFVNMYEVI 844 (1012)
T ss_pred cchhhhhhhhhhhccCCcceeeeecccCc-cccccccCCCceEEEecCCCceEEEEEec
Confidence 47888765432 2222 111111 11111234433 57788899999999874
No 174
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.88 E-value=2.4e-21 Score=161.73 Aligned_cols=232 Identities=24% Similarity=0.407 Sum_probs=184.3
Q ss_pred CcEEEEEEc-------CCCCcEEEEecCCCeEEEEEcCCCeeeEeecC--cccCE---EEEEEcCCCCEEEEEeCCCcEE
Q 016187 65 DEVYSVACS-------PTDATLVATGGGDDKGFFWRINQGDWASEIQG--HKDSV---SSLAFSMDGQLLASGGLDGLVQ 132 (394)
Q Consensus 65 ~~v~~~~~~-------p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~--h~~~V---~~v~~s~~g~~l~t~s~d~~i~ 132 (394)
+.|+...|- | +..++|+.+.+..|.+||..+|++...+++ |.+.+ .+++|+|||.+|+.| ....|+
T Consensus 105 ~tvydy~wYs~M~s~qP-~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcir 182 (406)
T KOG2919|consen 105 ETVYDYCWYSRMKSDQP-STNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIR 182 (406)
T ss_pred CEEEEEEeeeccccCCC-ccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEE
Confidence 457777775 4 467899999999999999999999887765 55443 589999999999855 678999
Q ss_pred EEeC-CCCceE---EEE----ecCCCCEEEEEEcCCCC-EEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCC
Q 016187 133 IWDP-SSGNLK---CTL----EGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG 203 (394)
Q Consensus 133 vwd~-~~~~~~---~~~----~~~~~~v~~~~~~~~~~-~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~ 203 (394)
++|+ ..|+.- .++ .+..+-+.+++|+|... .++.|+....+-||.-....++..+.+|.+.|+.+.|.++|
T Consensus 183 vFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edG 262 (406)
T KOG2919|consen 183 VFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDG 262 (406)
T ss_pred EeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCc
Confidence 9998 445321 111 12345678899999755 88999999999999988888888899999999999999999
Q ss_pred CeEEEEeC-CCcEEEEcCCCCc-eEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CcEEEEeccCCCC
Q 016187 204 KTICTGSD-DATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT-GKVVSSLVSHTDS 280 (394)
Q Consensus 204 ~~l~s~~~-dg~i~vwd~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~-~~~~~~~~~h~~~ 280 (394)
+.|++|+. |-.|-.||++.-. .+..+..|...+..-.-....|++.+|++|+.||.|++||++. +..+..+..|...
T Consensus 263 n~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~ 342 (406)
T KOG2919|consen 263 NKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDT 342 (406)
T ss_pred CeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccccc
Confidence 99999976 6779999998543 3334444332222333467789999999999999999999988 6767788889999
Q ss_pred EEEEEECCCCCeEEEEeC
Q 016187 281 IECIGFSRSSPWAATGSM 298 (394)
Q Consensus 281 i~~v~~~~~~~~l~s~s~ 298 (394)
++.++++|--+++|+++.
T Consensus 343 vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 343 VNGVSLNPIMPILATSSG 360 (406)
T ss_pred ccceecCcccceeeeccC
Confidence 999999999999988764
No 175
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=5.9e-20 Score=172.02 Aligned_cols=327 Identities=20% Similarity=0.287 Sum_probs=230.8
Q ss_pred ccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCC----CeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 016187 62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ----GDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS 137 (394)
Q Consensus 62 ~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~----~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~ 137 (394)
.|+-.+++.++||+ ++++|+|-.||+|.+|.-.. ......+.-|.++|.+++|+++|.+|++|+..+.+.+|.+.
T Consensus 203 ~Htf~~t~~~~spn-~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 203 HHTFNITCVALSPN-ERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhcccceeEEeccc-cceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 47777899999996 67899999999999998432 12345688899999999999999999999999999999999
Q ss_pred CCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecc-----------cCcCeEEEEECCCCCeE
Q 016187 138 SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSG-----------HGSSVTCGDFTPDGKTI 206 (394)
Q Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~-----------h~~~v~~~~~~~~~~~l 206 (394)
+++ ...++.-.++|..+.++|++.+.+....|+.|.+....+......++| ..+-.+.+.++|.-+.+
T Consensus 282 T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~ 360 (792)
T KOG1963|consen 282 TGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSL 360 (792)
T ss_pred CCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCce
Confidence 998 556677788999999999999999999999999987654433222222 23345677889977788
Q ss_pred EEEeCCCcEEEEcCCCCceEEEEcCC--C------CcccCeEEEEEcCCCCEEEEEe--------CC--CcEEEEECCCC
Q 016187 207 CTGSDDATLRVWNPKSGENIHVIRGH--P------YHTEGLTCLTISADSTLALSGS--------KD--GSVHMVNITTG 268 (394)
Q Consensus 207 ~s~~~dg~i~vwd~~~~~~~~~~~~~--~------~~~~~i~~~~~~~~~~~l~~g~--------~d--g~i~i~d~~~~ 268 (394)
+-.+..|.|.+||+-+...+..+... . .+.-+++.++.+..|.++++.- .| -.+++|-....
T Consensus 361 vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~ 440 (792)
T KOG1963|consen 361 VLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPN 440 (792)
T ss_pred eecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCC
Confidence 88899999999999888766554321 1 1223567777777888887753 23 35678865432
Q ss_pred c---EEEE--eccCCCCEEEEEEC-CCCC-eEEEEeCCCcEEEEeCCCC------Ccceec-----cCCCCEEEEEEeCC
Q 016187 269 K---VVSS--LVSHTDSIECIGFS-RSSP-WAATGSMDQKLIIWDLQHS------LPRSTC-----DHEDGVTCLMWLGT 330 (394)
Q Consensus 269 ~---~~~~--~~~h~~~i~~v~~~-~~~~-~l~s~s~dg~i~iwd~~~~------~~~~~~-----~~~~~v~~~~~~~~ 330 (394)
. .+.+ ...|...+.+..+. +... .+++++.||.++||-+... .....| .|..++++++|+.|
T Consensus 441 ~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~d 520 (792)
T KOG1963|consen 441 SKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQD 520 (792)
T ss_pred cceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCC
Confidence 2 2222 24577665555544 3333 7999999999999987321 111111 26778899999999
Q ss_pred CCEEEEEeCCCeEEEEECCC-CeEEEEeecccCceeEEEEccCC--CEEEEEeCCCcEEEEecc
Q 016187 331 SKYVVTGCVDGKVRVWDSLS-GDCVRTFSGHRDAIQAISVSAHQ--DFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 331 ~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~~~~~--~~l~s~s~dg~i~iw~~~ 391 (394)
|.. ++.+.+++|.+||..+ ..++.....-..++..+.|.... ...+.....+.+.+|++-
T Consensus 521 Gsl-la~s~~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll 583 (792)
T KOG1963|consen 521 GSL-LAVSFDDTITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGALVHATQQRLSVWNLL 583 (792)
T ss_pred CcE-EEEecCCEEEEecCCChhhhhccccccccchHhHhhhcccccccceeeccCceEehHhhh
Confidence 955 4556799999999988 33333333333344444444321 223344556677778764
No 176
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.87 E-value=5.5e-22 Score=183.94 Aligned_cols=281 Identities=21% Similarity=0.369 Sum_probs=221.8
Q ss_pred eeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 016187 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDP 136 (394)
Q Consensus 57 ~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~ 136 (394)
...+.||...|||++|.-+ ++++.||+.|..++||..+++.++..++||.+.|+.++.+....+++++|.|..|++|.+
T Consensus 183 ikrLlgH~naVyca~fDrt-g~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl 261 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRT-GRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL 261 (1113)
T ss_pred HHHHHhhhhheeeeeeccc-cceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence 3446799999999999875 678999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeee---ec-ccCcCeEEEEECCCCCeEEEEeCC
Q 016187 137 SSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM---FS-GHGSSVTCGDFTPDGKTICTGSDD 212 (394)
Q Consensus 137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~---~~-~h~~~v~~~~~~~~~~~l~s~~~d 212 (394)
.++..+..+.+|.+.|++++|+|.- +.+.||++++||.+-...+.. .. .....+-.+.|-.++..++|++.|
T Consensus 262 ~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d 337 (1113)
T KOG0644|consen 262 PDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRD 337 (1113)
T ss_pred CCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCC
Confidence 9999999999999999999999964 778899999999872211111 11 122445566777788899999999
Q ss_pred CcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCC
Q 016187 213 ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD-STLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSP 291 (394)
Q Consensus 213 g~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~ 291 (394)
+.-+.|.+..... +...+..+..+.+ ..+.+++-.+-.+.+|++.+|+..+.+.+|.+.+..+.++|-.+
T Consensus 338 ~ea~n~e~~~l~~---------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ 408 (1113)
T KOG0644|consen 338 GEARNHEFEQLAW---------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNP 408 (1113)
T ss_pred cccccchhhHhhh---------hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCc
Confidence 9999987642111 1111112222222 24566677788899999999999999999999999999999765
Q ss_pred -eEEEEeCCCcEEEEeCCCCCccee--ccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCe
Q 016187 292 -WAATGSMDQKLIIWDLQHSLPRST--CDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGD 352 (394)
Q Consensus 292 -~l~s~s~dg~i~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~ 352 (394)
+..+++.||...|||+-...+... .+| ..+....|+++|..++....-|.++|...-.++
T Consensus 409 ri~msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 409 RIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred HhhhhccCCCceEeeecccCCcceeeeccc-ceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 456889999999999976654432 343 445566899999999888888999998754443
No 177
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=5.4e-20 Score=157.43 Aligned_cols=290 Identities=16% Similarity=0.246 Sum_probs=215.7
Q ss_pred ceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCC------CeeeEeecC-cccCEEEEEEcCCCCEEEEEeCC
Q 016187 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ------GDWASEIQG-HKDSVSSLAFSMDGQLLASGGLD 128 (394)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~------~~~~~~~~~-h~~~V~~v~~s~~g~~l~t~s~d 128 (394)
..+-+.+|.+.|++|.|+.+ +++||+||.|..+++|++.. .+.+..... |...|.|++|....++|++|+.+
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N-~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHN-DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW 126 (609)
T ss_pred hhhhhhhhccccceeeeccC-CeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence 44556799999999999985 78999999999999999753 344444433 55899999999999999999999
Q ss_pred CcEEEEeCCCCceEEEEec--CCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccc-ee--eeecccCcCeEEEEECCC-
Q 016187 129 GLVQIWDPSSGNLKCTLEG--PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-YL--NMFSGHGSSVTCGDFTPD- 202 (394)
Q Consensus 129 ~~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~-~~--~~~~~h~~~v~~~~~~~~- 202 (394)
++|.+.|+.+.+.+..+.. ..+.|+.+.-+|..+.|++.+.++.+.+||.+..+ .+ ............+-|+|.
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~ 206 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET 206 (609)
T ss_pred ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence 9999999999887765542 34689999999999999999999999999987654 21 122223455667889995
Q ss_pred CCeEEEEeCCCcEEEEcCCCCceEEE----EcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCC
Q 016187 203 GKTICTGSDDATLRVWNPKSGENIHV----IRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHT 278 (394)
Q Consensus 203 ~~~l~s~~~dg~i~vwd~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~ 278 (394)
-.+|++.+..+-+.+||.+..+.... ..+.+........+.|+|.|+.+++--....-.+||+-+.++..--..|.
T Consensus 207 P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N 286 (609)
T KOG4227|consen 207 PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHN 286 (609)
T ss_pred ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCC
Confidence 45778888899999999886543111 11111112234567899999988877666677788887755432222232
Q ss_pred -------CCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC------------------------CcceeccCCCCEEEEEE
Q 016187 279 -------DSIECIGFSRSSPWAATGSMDQKLIIWDLQHS------------------------LPRSTCDHEDGVTCLMW 327 (394)
Q Consensus 279 -------~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~------------------------~~~~~~~~~~~v~~~~~ 327 (394)
..+.++.|..+.. +++|+.+=.|.+|.+... ......+|...++.+.|
T Consensus 287 ~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF 365 (609)
T KOG4227|consen 287 PNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRF 365 (609)
T ss_pred CCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceee
Confidence 2356677776554 899999999999987421 00112468888899999
Q ss_pred eCCCCEEEEEeCCCeEEEEE
Q 016187 328 LGTSKYVVTGCVDGKVRVWD 347 (394)
Q Consensus 328 ~~~~~~l~sg~~dg~i~iwd 347 (394)
+|...+|++.+....++||.
T Consensus 366 ~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 366 SQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred cCCcceEeccchhhheeccc
Confidence 99999999999999999996
No 178
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.87 E-value=4.3e-22 Score=184.65 Aligned_cols=281 Identities=21% Similarity=0.349 Sum_probs=215.9
Q ss_pred eeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeC
Q 016187 99 WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA 178 (394)
Q Consensus 99 ~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~ 178 (394)
.+..|.||..+|+|+.|...|.+++||+.|..++||...++.++..+.+|.+.++.++.+.+...++++|.|..|++|.+
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl 261 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL 261 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence 44567899999999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred CccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCc-ccCeEEEEEcCCCCEEEEEeCC
Q 016187 179 DRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYH-TEGLTCLTISADSTLALSGSKD 257 (394)
Q Consensus 179 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~g~~d 257 (394)
..+..+..+.||.+.|++++|+|-. +.+.||++++||.+-.-.+..-+...+. ..-+.++.+...+.-+++|+.|
T Consensus 262 ~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d 337 (1113)
T KOG0644|consen 262 PDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRD 337 (1113)
T ss_pred CCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCC
Confidence 9999999999999999999999964 7789999999998721111110111111 1234556667778888999999
Q ss_pred CcEEEEECCCCcEEEEeccCCCCEEEEEECCC-CCeEEEEeCCCcEEEEeCCCCC-cceeccCCCCEEEEEEeCCCCE-E
Q 016187 258 GSVHMVNITTGKVVSSLVSHTDSIECIGFSRS-SPWAATGSMDQKLIIWDLQHSL-PRSTCDHEDGVTCLMWLGTSKY-V 334 (394)
Q Consensus 258 g~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~-~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~v~~~~~~~~~~~-l 334 (394)
+.-..|.+.... .+...+.-+.++.+ ..+.+++-.+-.+++|++...+ .....+|...+..+.++|-+.. .
T Consensus 338 ~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~ 411 (1113)
T KOG0644|consen 338 GEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIA 411 (1113)
T ss_pred cccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhh
Confidence 988777653211 11111111112211 2466677778889999987764 3445678899999999997654 4
Q ss_pred EEEeCCCeEEEEECCCCeEEEEee-cccCceeEEEEccCCCEEEEEeCCCcEEEEec
Q 016187 335 VTGCVDGKVRVWDSLSGDCVRTFS-GHRDAIQAISVSAHQDFLVSVSLDGTARVFEI 390 (394)
Q Consensus 335 ~sg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~ 390 (394)
.+++.||+..|||+..|..++.+. +|. .+..-+|++||..++...+-|.+.|...
T Consensus 412 msag~dgst~iwdi~eg~pik~y~~gh~-kl~d~kFSqdgts~~lsd~hgql~i~g~ 467 (1113)
T KOG0644|consen 412 MSAGYDGSTIIWDIWEGIPIKHYFIGHG-KLVDGKFSQDGTSIALSDDHGQLYILGT 467 (1113)
T ss_pred hhccCCCceEeeecccCCcceeeecccc-eeeccccCCCCceEecCCCCCceEEecc
Confidence 578999999999999998887654 555 4557789999998877666677777653
No 179
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2.4e-20 Score=156.93 Aligned_cols=270 Identities=18% Similarity=0.235 Sum_probs=192.9
Q ss_pred cEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCceEEE--EecCC-CCE
Q 016187 78 TLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM--DGQLLASGGLDGLVQIWDPSSGNLKCT--LEGPG-GGV 152 (394)
Q Consensus 78 ~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~--~g~~l~t~s~d~~i~vwd~~~~~~~~~--~~~~~-~~v 152 (394)
..+|++-..+.|++||..+++.+..+++|...+..+.|.. ....+.+|+.||+||+||+.+...... ..++. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 4678888899999999999999999999999999999987 456789999999999999987654332 23333 466
Q ss_pred EEEEEcCCCCEEEEecC----CCeEEEEeCCccce-ee-eecccCcCeEEEEECC-CCCeEEEEeCCCcEEEEcCCCCce
Q 016187 153 EWVSWHPRGHIVLAGSE----DSTVWMWNADRAAY-LN-MFSGHGSSVTCGDFTP-DGKTICTGSDDATLRVWNPKSGEN 225 (394)
Q Consensus 153 ~~~~~~~~~~~l~~~s~----d~~i~iw~~~~~~~-~~-~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~ 225 (394)
.+++.+..++++++|.. +-.+.+||++..+. ++ ....|...|+++.|+| +-++|+|||.||.|.|+|++....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 77777767888888764 56899999987654 43 3467999999999999 567899999999999999875432
Q ss_pred EEEEcCCCCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEeccCC------------CC-EEEEEECCCCC
Q 016187 226 IHVIRGHPYHTEGLTCLTISADS-TLALSGSKDGSVHMVNITTGKVVSSLVSHT------------DS-IECIGFSRSSP 291 (394)
Q Consensus 226 ~~~~~~~~~~~~~i~~~~~~~~~-~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~------------~~-i~~v~~~~~~~ 291 (394)
--.+...-.+...|.++.|..++ +.+.+-+...+..+|++..+.....+.... .. |.+. ...+..
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~-~~~~~~ 279 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEH-SPGDKD 279 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecc-cCCCcc
Confidence 11111111244568888888776 457888899999999998876544332110 01 1111 122333
Q ss_pred eEEEEeC-CCcEEEEeCCC---CC-----cceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 016187 292 WAATGSM-DQKLIIWDLQH---SL-----PRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDS 348 (394)
Q Consensus 292 ~l~s~s~-dg~i~iwd~~~---~~-----~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~ 348 (394)
.++.++. -++..++-+.. .. .....+|...|..+.|...+.++.||+.||.+.+|..
T Consensus 280 ~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 280 TCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred eEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 4444443 66776665432 11 1112236666888888888999999999999999974
No 180
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=3.3e-21 Score=169.04 Aligned_cols=292 Identities=20% Similarity=0.308 Sum_probs=224.6
Q ss_pred eeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEE-ecCCCCEEEEEEcCCC--CEEEEecCCCeEEE
Q 016187 99 WASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL-EGPGGGVEWVSWHPRG--HIVLAGSEDSTVWM 175 (394)
Q Consensus 99 ~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~--~~l~~~s~d~~i~i 175 (394)
+...|..|.+.|..|.|...|..|++||.|..|.+||...+..+..+ .+|...|....|-|.. ..+++++.||.+++
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 34567889999999999999999999999999999999988876655 4677777777888853 57899999999998
Q ss_pred EeCCccce---eeeecccCcCeEEEEECCCC-CeEEEEeCCCcEEEEcCCCCceEEEEcCCCCccc---CeEEEEEcCCC
Q 016187 176 WNADRAAY---LNMFSGHGSSVTCGDFTPDG-KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTE---GLTCLTISADS 248 (394)
Q Consensus 176 w~~~~~~~---~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~ 248 (394)
=.+....+ .+.+..|.++|..++.-|+. .-|.+++.|+.+.-.|++.+.....+.....+.. ....++..|-.
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 77543222 34456799999999999965 4688999999999999987754333321112222 56778888866
Q ss_pred C-EEEEEeCCCcEEEEECCCCc------EEEEeccC------CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC----
Q 016187 249 T-LALSGSKDGSVHMVNITTGK------VVSSLVSH------TDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSL---- 311 (394)
Q Consensus 249 ~-~l~~g~~dg~i~i~d~~~~~------~~~~~~~h------~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~---- 311 (394)
. .+++|+.|..+++||.+.-. .+.++..| .-.|++++|+.++.-|+++-.|-.|.+|.-....
T Consensus 294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p 373 (559)
T KOG1334|consen 294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEP 373 (559)
T ss_pred ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCC
Confidence 5 88999999999999986522 23333222 3469999999887777777778889998532111
Q ss_pred ----------cceeccCCCC--EEEEE-EeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEE
Q 016187 312 ----------PRSTCDHEDG--VTCLM-WLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVS 378 (394)
Q Consensus 312 ----------~~~~~~~~~~--v~~~~-~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s 378 (394)
+....+|... |.++- |.|...|+++|+.-|.|.||+-.+++.++.++|-+..|+||.-+|.-+.|||
T Consensus 374 ~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAs 453 (559)
T KOG1334|consen 374 DPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLAS 453 (559)
T ss_pred CCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhc
Confidence 1112345432 55554 4688999999999999999999999999999987779999999999999999
Q ss_pred EeCCCcEEEEec
Q 016187 379 VSLDGTARVFEI 390 (394)
Q Consensus 379 ~s~dg~i~iw~~ 390 (394)
.|.|..||||.-
T Consensus 454 SGid~DVKIWTP 465 (559)
T KOG1334|consen 454 SGIDHDVKIWTP 465 (559)
T ss_pred cCCccceeeecC
Confidence 999999999964
No 181
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.86 E-value=7.7e-20 Score=150.59 Aligned_cols=260 Identities=20% Similarity=0.330 Sum_probs=190.5
Q ss_pred CCCeEEEEEcCCC--ee-eEeecCcccCEEEEEEcCCC-CEEEEEeCC-------CcEEEEeCCCCc---------eEEE
Q 016187 85 GDDKGFFWRINQG--DW-ASEIQGHKDSVSSLAFSMDG-QLLASGGLD-------GLVQIWDPSSGN---------LKCT 144 (394)
Q Consensus 85 ~d~~v~~w~~~~~--~~-~~~~~~h~~~V~~v~~s~~g-~~l~t~s~d-------~~i~vwd~~~~~---------~~~~ 144 (394)
.|..|.+-++..+ ++ ...|..|.+.|+.++-+|-. +.|+|+-.+ ..+.||.+.... .+..
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 3455555444322 22 23567788999999999965 566666543 246789865321 2223
Q ss_pred Ee-cCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccce-eeee-----cccCcCeEEEEECC--CCCeEEEEeCCCcE
Q 016187 145 LE-GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY-LNMF-----SGHGSSVTCGDFTP--DGKTICTGSDDATL 215 (394)
Q Consensus 145 ~~-~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~-~~~~-----~~h~~~v~~~~~~~--~~~~l~s~~~dg~i 215 (394)
+. .+.+.+.++-|.|++..+++-. |..|.+|++..++. ...+ ..|....++.+|+| +|+.+++. .|+++
T Consensus 118 Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl 195 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTL 195 (370)
T ss_pred CCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcE
Confidence 32 3446899999999998887755 89999999987654 2222 23566788899999 67777765 57999
Q ss_pred EEEcCCCCceEEEEcCCCCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCC-cEEEEeccCCCCEEEEEECCC-CCe
Q 016187 216 RVWNPKSGENIHVIRGHPYHTEGLTCLTISADS-TLALSGSKDGSVHMVNITTG-KVVSSLVSHTDSIECIGFSRS-SPW 292 (394)
Q Consensus 216 ~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~g~~dg~i~i~d~~~~-~~~~~~~~h~~~i~~v~~~~~-~~~ 292 (394)
+.||+++..+...++. +|...+..+.|+|+- .+|++++.||.|++||.+.- .++.++.+|..+|.+|.|+|. .++
T Consensus 196 ~~~D~RT~~~~~sI~d--AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqL 273 (370)
T KOG1007|consen 196 QFWDLRTMKKNNSIED--AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQL 273 (370)
T ss_pred EEEEccchhhhcchhh--hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceE
Confidence 9999999887766653 466779999999975 47788999999999999865 478889999999999999996 567
Q ss_pred EEEEeCCCcEEEEeCCCC------------------------------CcceeccCCCCEEEEEEeCCCCEE-EEEeCCC
Q 016187 293 AATGSMDQKLIIWDLQHS------------------------------LPRSTCDHEDGVTCLMWLGTSKYV-VTGCVDG 341 (394)
Q Consensus 293 l~s~s~dg~i~iwd~~~~------------------------------~~~~~~~~~~~v~~~~~~~~~~~l-~sg~~dg 341 (394)
+++++.|..|.+|..... .......|++.|.+++|+....++ |+-+.||
T Consensus 274 iLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDG 353 (370)
T KOG1007|consen 274 ILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDG 353 (370)
T ss_pred EEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCc
Confidence 899999999999965311 011223588899999999877765 5568999
Q ss_pred eEEEEEC
Q 016187 342 KVRVWDS 348 (394)
Q Consensus 342 ~i~iwd~ 348 (394)
++.|=.+
T Consensus 354 RviIs~V 360 (370)
T KOG1007|consen 354 RVIISSV 360 (370)
T ss_pred eEEeecC
Confidence 9988654
No 182
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.86 E-value=8.9e-19 Score=159.33 Aligned_cols=242 Identities=19% Similarity=0.310 Sum_probs=188.1
Q ss_pred CceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 016187 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIW 134 (394)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vw 134 (394)
...+.+.||++.|+++||+. ++.++|||+.|+.|.+|+......+. + .|.+.|.||.|+|-...|+|++-. ..-+|
T Consensus 44 ~llqtLKgHKDtVycVAys~-dGkrFASG~aDK~VI~W~~klEG~Lk-Y-SH~D~IQCMsFNP~~h~LasCsLs-dFglW 119 (1081)
T KOG1538|consen 44 TLLQPLKGHKDTVYCVAYAK-DGKRFASGSADKSVIIWTSKLEGILK-Y-SHNDAIQCMSFNPITHQLASCSLS-DFGLW 119 (1081)
T ss_pred ccccccccccceEEEEEEcc-CCceeccCCCceeEEEecccccceee-e-ccCCeeeEeecCchHHHhhhcchh-hcccc
Confidence 34677899999999999998 56789999999999999865433222 2 499999999999999999999865 35678
Q ss_pred eCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcccee--eeecccCcCeEEEEECCCC-----CeEE
Q 016187 135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL--NMFSGHGSSVTCGDFTPDG-----KTIC 207 (394)
Q Consensus 135 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~--~~~~~h~~~v~~~~~~~~~-----~~l~ 207 (394)
........ .. .....+.+++|..+|.+++.|-.+|+|.+-+-...+.. ...-|...+|.+++|+|.. ..++
T Consensus 120 S~~qK~V~-K~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~a 197 (1081)
T KOG1538|consen 120 SPEQKSVS-KH-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILA 197 (1081)
T ss_pred ChhhhhHH-hh-hhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEE
Confidence 76543322 11 12346788999999999999999999999876543332 3334567899999999953 4677
Q ss_pred EEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEEC
Q 016187 208 TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS 287 (394)
Q Consensus 208 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~ 287 (394)
......++..+.+. |+.+..-+. ..-...|+.+.++|.+++.|+.|+.+++|. +.|-.+.++-....+|..++..
T Consensus 198 V~DW~qTLSFy~Ls-G~~Igk~r~---L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~ 272 (1081)
T KOG1538|consen 198 VADWGQTLSFYQLS-GKQIGKDRA---LNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAK 272 (1081)
T ss_pred EEeccceeEEEEec-ceeeccccc---CCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEc
Confidence 88888888888764 444332221 223456899999999999999999999996 5677777776678899999999
Q ss_pred CCCCeEEEEeCCCcEEEEeC
Q 016187 288 RSSPWAATGSMDQKLIIWDL 307 (394)
Q Consensus 288 ~~~~~l~s~s~dg~i~iwd~ 307 (394)
|++++++.|+.||+|..|++
T Consensus 273 PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 273 PNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred cCCceEEEEEccCeeehhhh
Confidence 99999999999999998875
No 183
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.86 E-value=1.3e-18 Score=158.12 Aligned_cols=261 Identities=12% Similarity=0.143 Sum_probs=176.1
Q ss_pred EEEeCCCcEEEEeCCC-Cc--eEEEEecCCCCEEEEEEcCCCCEEEEec-CCCeEEEEeCCc-cce--eeeecccCcCeE
Q 016187 123 ASGGLDGLVQIWDPSS-GN--LKCTLEGPGGGVEWVSWHPRGHIVLAGS-EDSTVWMWNADR-AAY--LNMFSGHGSSVT 195 (394)
Q Consensus 123 ~t~s~d~~i~vwd~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~d~~i~iw~~~~-~~~--~~~~~~h~~~v~ 195 (394)
++...++.|++|++.+ ++ .+..+. ..+....++++|++++|++++ .++.|.+|++.. +.. ..... ....+.
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~ 83 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPT 83 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCce
Confidence 4446789999999964 43 334443 335577899999999886654 578999999863 322 22221 233456
Q ss_pred EEEECCCCCeEEEEeC-CCcEEEEcCCCCc----eEEEEcCCCCcccCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCc
Q 016187 196 CGDFTPDGKTICTGSD-DATLRVWNPKSGE----NIHVIRGHPYHTEGLTCLTISADSTLALSG-SKDGSVHMVNITTGK 269 (394)
Q Consensus 196 ~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g-~~dg~i~i~d~~~~~ 269 (394)
.++|+|++++|++++. ++.|.+|++.+.. .+..+. ......++.++|++++++++ ..++.|.+||+.+..
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~----~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g 159 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE----GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG 159 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc----CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC
Confidence 7999999998887764 8899999986432 122221 12345678899999888654 466999999997643
Q ss_pred EEE-------EeccCCCCEEEEEECCCCCeEEEEeC-CCcEEEEeCCCC--Ccce--ec-c------CCCCEEEEEEeCC
Q 016187 270 VVS-------SLVSHTDSIECIGFSRSSPWAATGSM-DQKLIIWDLQHS--LPRS--TC-D------HEDGVTCLMWLGT 330 (394)
Q Consensus 270 ~~~-------~~~~h~~~i~~v~~~~~~~~l~s~s~-dg~i~iwd~~~~--~~~~--~~-~------~~~~v~~~~~~~~ 330 (394)
.+. ... .......++|+|++++++++.. +++|.+|++... .... .. . +......+.++|+
T Consensus 160 ~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd 238 (330)
T PRK11028 160 HLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD 238 (330)
T ss_pred cccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC
Confidence 221 111 1234567999999999988776 899999998632 1111 11 0 1112335789999
Q ss_pred CCEEEEEeC-CCeEEEEECCCCe----EEEEeecccCceeEEEEccCCCEEEEEeC-CCcEEEEecc
Q 016187 331 SKYVVTGCV-DGKVRVWDSLSGD----CVRTFSGHRDAIQAISVSAHQDFLVSVSL-DGTARVFEIA 391 (394)
Q Consensus 331 ~~~l~sg~~-dg~i~iwd~~~~~----~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-dg~i~iw~~~ 391 (394)
+++|+++.. ++.|.+|++.... .+..+.. ......+.|+|++++|+++.. +++|.+|+++
T Consensus 239 g~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 239 GRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 999999854 7899999985432 2222222 124568999999999997775 8999999874
No 184
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=1.9e-19 Score=171.27 Aligned_cols=281 Identities=16% Similarity=0.276 Sum_probs=205.9
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEec---CCCCEEEEEEcC--CCCEEEEecCCCeEEEEeCCc--
Q 016187 108 DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG---PGGGVEWVSWHP--RGHIVLAGSEDSTVWMWNADR-- 180 (394)
Q Consensus 108 ~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~---~~~~v~~~~~~~--~~~~l~~~s~d~~i~iw~~~~-- 180 (394)
.+-..+.|+|-...++++.....|+|||...++.+..+.. ....|+.+.+-. +..++++|+.||.|+||+--.
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 3456788999888999998788999999999888766543 335677777754 345889999999999997422
Q ss_pred ---cceeeeecc---c----CcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcC-CCC
Q 016187 181 ---AAYLNMFSG---H----GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-DST 249 (394)
Q Consensus 181 ---~~~~~~~~~---h----~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~ 249 (394)
.+.+..+.+ + .+.-.-++|.....+|++++.-..|||||....+....+... ....+++++-+. .|+
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~--s~t~vTaLS~~~~~gn 1222 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYG--SSTLVTALSADLVHGN 1222 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccC--CCccceeecccccCCc
Confidence 222222221 1 111122467776666666666899999999877766555422 234466665443 468
Q ss_pred EEEEEeCCCcEEEEECCCCc---EEEEeccCCCC--EEEEEECCCCCe-EEEEeCCCcEEEEeCCCCCccee---cc---
Q 016187 250 LALSGSKDGSVHMVNITTGK---VVSSLVSHTDS--IECIGFSRSSPW-AATGSMDQKLIIWDLQHSLPRST---CD--- 317 (394)
Q Consensus 250 ~l~~g~~dg~i~i~d~~~~~---~~~~~~~h~~~--i~~v~~~~~~~~-l~s~s~dg~i~iwd~~~~~~~~~---~~--- 317 (394)
.+++|..||.|++||.+... .+.....|... |..+.+-+.|-- |++|+.+|.|++||++....... ..
T Consensus 1223 ~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~ 1302 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWE 1302 (1387)
T ss_pred eEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccc
Confidence 99999999999999987542 45666778877 999999887654 99999999999999987422111 11
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecc-------cCceeEEEEccCCCEEEEEeCCCcEEEEec
Q 016187 318 HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGH-------RDAIQAISVSAHQDFLVSVSLDGTARVFEI 390 (394)
Q Consensus 318 ~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h-------~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~ 390 (394)
....++++..++....+|+|+. +.|+||++. |+++..++.+ .+.+.+++|+|..-++|.|+.|.+|.||..
T Consensus 1303 yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1303 YGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSC 1380 (1387)
T ss_pred cCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeec
Confidence 2235899999999999999998 999999974 5555544432 356799999999999999999999999987
Q ss_pred cC
Q 016187 391 AD 392 (394)
Q Consensus 391 ~~ 392 (394)
..
T Consensus 1381 ~k 1382 (1387)
T KOG1517|consen 1381 EK 1382 (1387)
T ss_pred CC
Confidence 64
No 185
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=1.2e-19 Score=172.49 Aligned_cols=285 Identities=19% Similarity=0.352 Sum_probs=204.0
Q ss_pred CCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcc---cCEEEEEEcC--CCCEEEEEeCCCcEEEEeCC-
Q 016187 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHK---DSVSSLAFSM--DGQLLASGGLDGLVQIWDPS- 137 (394)
Q Consensus 64 ~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~---~~V~~v~~s~--~g~~l~t~s~d~~i~vwd~~- 137 (394)
..+-..+.|+|-... ++++.....++|||.+.++....+..+. ..|+.+.+-. |..+|++|+.||.||||+--
T Consensus 1064 ~~~pk~~~~hpf~p~-i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQ-IAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred CCCCceeeecCCCce-eEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence 334566778886554 5566667889999999998877776543 5688888864 45689999999999999742
Q ss_pred C----CceEEEEe-------cCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeeccc-CcCeEEEEEC-CCCC
Q 016187 138 S----GNLKCTLE-------GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH-GSSVTCGDFT-PDGK 204 (394)
Q Consensus 138 ~----~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h-~~~v~~~~~~-~~~~ 204 (394)
+ .+.+.... +..+.-.-+.|.....+|++++.-..|+|||.....+...+... ...++++.-. +.|+
T Consensus 1143 ~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn 1222 (1387)
T KOG1517|consen 1143 DKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGN 1222 (1387)
T ss_pred cccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCc
Confidence 2 22222221 11111134678877777777777899999999988777665443 4455655433 3579
Q ss_pred eEEEEeCCCcEEEEcCCCCce---EEEEcCCCCcccCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcE--EEEeccCC
Q 016187 205 TICTGSDDATLRVWNPKSGEN---IHVIRGHPYHTEGLTCLTISADST-LALSGSKDGSVHMVNITTGKV--VSSLVSHT 278 (394)
Q Consensus 205 ~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~-~l~~g~~dg~i~i~d~~~~~~--~~~~~~h~ 278 (394)
.+++|..||+||+||.+.... +...+.|.. ..+|..+.+.+.|- .+++|+.+|.|++||++.... ..++..|.
T Consensus 1223 ~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~-~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~ 1301 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPDSLVCVYREHND-VEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHW 1301 (1387)
T ss_pred eEEEeecCCceEEeecccCCccccceeecccCC-cccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecc
Confidence 999999999999999876543 333444322 22388899988765 499999999999999987422 22233343
Q ss_pred --C-CEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceec-------cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 016187 279 --D-SIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTC-------DHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDS 348 (394)
Q Consensus 279 --~-~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~ 348 (394)
+ ..+++..++..+.+|+|+. +.|+||++...+..... .....+.|++|+|...++|+|+.|..|.||..
T Consensus 1302 ~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1302 EYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSC 1380 (1387)
T ss_pred ccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeec
Confidence 3 4899999999999999998 99999998754322211 22345799999999999999999999999976
Q ss_pred CCC
Q 016187 349 LSG 351 (394)
Q Consensus 349 ~~~ 351 (394)
...
T Consensus 1381 ~k~ 1383 (1387)
T KOG1517|consen 1381 EKP 1383 (1387)
T ss_pred CCc
Confidence 543
No 186
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=3.4e-19 Score=154.18 Aligned_cols=194 Identities=24% Similarity=0.293 Sum_probs=153.0
Q ss_pred EEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 016187 195 TCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL 274 (394)
Q Consensus 195 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~ 274 (394)
.+++|+++|..|++|+.||++|+|+......+... ..|...|..+.|+|||+++++-+.| ..++|+..++..+...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e---~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEE---IAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhh---HhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 67899999999999999999999996555433322 2356789999999999999999999 9999999999766555
Q ss_pred cc--CCCCEEEEEECCCC-----CeEEEEeCCCcEEEEeCCCC------CcceeccCCCCEEEEEEeCCCCEEEEEeCCC
Q 016187 275 VS--HTDSIECIGFSRSS-----PWAATGSMDQKLIIWDLQHS------LPRSTCDHEDGVTCLMWLGTSKYVVTGCVDG 341 (394)
Q Consensus 275 ~~--h~~~i~~v~~~~~~-----~~l~s~s~dg~i~iwd~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg 341 (394)
.. -......+.|+.+. ..++.....+.|+.|++... ..+........+++++.+++|++++.|+.||
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dG 303 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDG 303 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCC
Confidence 42 22345567787766 33444455667777776432 1122223345799999999999999999999
Q ss_pred eEEEEECCCCeEEEEe-ecccCceeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 342 KVRVWDSLSGDCVRTF-SGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 342 ~i~iwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
.|-|+++.+-++++-. +.|...|+.|.|+||.+++++.+.|..+++..+.-
T Consensus 304 sVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 304 SVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred cEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999999988887755 48999999999999999999999999999988753
No 187
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.85 E-value=5.1e-18 Score=154.25 Aligned_cols=265 Identities=14% Similarity=0.182 Sum_probs=179.5
Q ss_pred EEEecCCCeEEEEEcCC-Ce--eeEeecCcccCEEEEEEcCCCCEEEEEe-CCCcEEEEeCC-CCceE--EEEecCCCCE
Q 016187 80 VATGGGDDKGFFWRINQ-GD--WASEIQGHKDSVSSLAFSMDGQLLASGG-LDGLVQIWDPS-SGNLK--CTLEGPGGGV 152 (394)
Q Consensus 80 lasg~~d~~v~~w~~~~-~~--~~~~~~~h~~~V~~v~~s~~g~~l~t~s-~d~~i~vwd~~-~~~~~--~~~~~~~~~v 152 (394)
.++...++.|.+|++.+ ++ .+..++ +.+....++++|++++|++++ .++.|.+|++. ++... .... ..+..
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p 82 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSP 82 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCc
Confidence 44456789999999963 33 444554 345677899999999887664 57889999986 34432 2222 23356
Q ss_pred EEEEEcCCCCEEEEec-CCCeEEEEeCCccc----eeeeecccCcCeEEEEECCCCCeEEE-EeCCCcEEEEcCCCCceE
Q 016187 153 EWVSWHPRGHIVLAGS-EDSTVWMWNADRAA----YLNMFSGHGSSVTCGDFTPDGKTICT-GSDDATLRVWNPKSGENI 226 (394)
Q Consensus 153 ~~~~~~~~~~~l~~~s-~d~~i~iw~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~l~s-~~~dg~i~vwd~~~~~~~ 226 (394)
..++|+|+++++++++ .++.+.+|++++.. .+..+. +...+.+++++|+++++++ ...++.|.+||+.+...+
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l 161 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHL 161 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcc
Confidence 7899999999887766 48899999986421 222222 2234567889999998854 456699999999764322
Q ss_pred EE-----EcCCCCcccCeEEEEEcCCCCEEEEEeC-CCcEEEEECCC--Cc--EEEEeccC------CCCEEEEEECCCC
Q 016187 227 HV-----IRGHPYHTEGLTCLTISADSTLALSGSK-DGSVHMVNITT--GK--VVSSLVSH------TDSIECIGFSRSS 290 (394)
Q Consensus 227 ~~-----~~~~~~~~~~i~~~~~~~~~~~l~~g~~-dg~i~i~d~~~--~~--~~~~~~~h------~~~i~~v~~~~~~ 290 (394)
.. ... ........+.++|++++++++.. +++|.+|++.. ++ .+.++..+ ......+.++|++
T Consensus 162 ~~~~~~~~~~--~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg 239 (330)
T PRK11028 162 VAQEPAEVTT--VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG 239 (330)
T ss_pred cccCCCceec--CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence 11 111 11234678899999999988776 89999999973 32 33333221 1223468899999
Q ss_pred CeEEEEeC-CCcEEEEeCCCCCc-ceeccC---CCCEEEEEEeCCCCEEEEEeC-CCeEEEEECC
Q 016187 291 PWAATGSM-DQKLIIWDLQHSLP-RSTCDH---EDGVTCLMWLGTSKYVVTGCV-DGKVRVWDSL 349 (394)
Q Consensus 291 ~~l~s~s~-dg~i~iwd~~~~~~-~~~~~~---~~~v~~~~~~~~~~~l~sg~~-dg~i~iwd~~ 349 (394)
++++++.. ++.|.+|++..... .....+ ......+.++|++++|+++.. +++|.+|++.
T Consensus 240 ~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 240 RHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 99888854 78999999854321 111111 123457889999999998775 8999999763
No 188
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.2e-18 Score=140.22 Aligned_cols=271 Identities=16% Similarity=0.238 Sum_probs=188.3
Q ss_pred cEEEEEEcCCCCcEEEEecCCCeEEEEEcCCC----------eeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 016187 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQG----------DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135 (394)
Q Consensus 66 ~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~----------~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd 135 (394)
.|++-+++|. +++|+.|..+|++.+..+++- ..+...++|..+|+.++|. ..+|++|+ ||.|+-|.
T Consensus 12 tvf~qa~sp~-~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 12 TVFAQAISPS-KQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHhhCCc-ceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 4566688995 567888999999999987531 2344568999999999998 34666665 69999887
Q ss_pred CCCCce------EEEE--ec-----CCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCC
Q 016187 136 PSSGNL------KCTL--EG-----PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPD 202 (394)
Q Consensus 136 ~~~~~~------~~~~--~~-----~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~ 202 (394)
.+.... +..+ +. .-..|+++...|..+.++.++.|+.++.||+++++..+.+.||.+.+.++.--..
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 543321 1111 11 1235888999999888888889999999999999999999999999999987555
Q ss_pred CCeEEEEeCCCcEEEEcCCCCceEEEEcCCCC-------cccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 016187 203 GKTICTGSDDATLRVWNPKSGENIHVIRGHPY-------HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV 275 (394)
Q Consensus 203 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~ 275 (394)
...+++|+.||++|+||+++++.+..+..... ....|.+++.+ ...+++| ....+.+|++++.++...+.
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCG-gGp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCG-GGPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEec-CCCceeEEeccCCCceEEEe
Confidence 66789999999999999999999887764221 12234555543 4566554 45689999999987765553
Q ss_pred cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCC-CEEEEEeCCCeEEEE
Q 016187 276 SHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTS-KYVVTGCVDGKVRVW 346 (394)
Q Consensus 276 ~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~iw 346 (394)
-..++..+.|-.+ .+++++..+.+.-|.+...............++..|+... ++|..++...++.|+
T Consensus 245 -ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 245 -IPARVHLVDFVDD--CVLIGGEGNHVQSYTLNGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred -cccceeEeeeecc--eEEEeccccceeeeeeccEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 3456667777654 5778888888888876543222211112233444444332 344445555556555
No 189
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.85 E-value=1.1e-18 Score=143.87 Aligned_cols=277 Identities=18% Similarity=0.312 Sum_probs=197.8
Q ss_pred cEEEEEEc--CCCCcEEEEecC----CCeEEEEEc--CCCeeeEee-cCcccCEEEEEEcCCC-----CEEEEEeCCCcE
Q 016187 66 EVYSVACS--PTDATLVATGGG----DDKGFFWRI--NQGDWASEI-QGHKDSVSSLAFSMDG-----QLLASGGLDGLV 131 (394)
Q Consensus 66 ~v~~~~~~--p~~~~~lasg~~----d~~v~~w~~--~~~~~~~~~-~~h~~~V~~v~~s~~g-----~~l~t~s~d~~i 131 (394)
..+++.|+ |+.+..||-|+- ...|.|-.+ .+++.+..- ..|.-+++.+.|.|+. .+|||.+ ..+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~L 123 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFL 123 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--CeE
Confidence 67888887 444567888873 334444333 344443321 3588999999999986 3566654 479
Q ss_pred EEEeCCC--CceE--EEE-----ecCCCCEEEEEEcCC-CCEEEEecCCCeEEEEeCCccc---eeeeecccCcCeEEEE
Q 016187 132 QIWDPSS--GNLK--CTL-----EGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNADRAA---YLNMFSGHGSSVTCGD 198 (394)
Q Consensus 132 ~vwd~~~--~~~~--~~~-----~~~~~~v~~~~~~~~-~~~l~~~s~d~~i~iw~~~~~~---~~~~~~~h~~~v~~~~ 198 (394)
|+|.+.. .+.. ..+ ..+.+++++..|+.- -+++.+.|-|.+..+||++++. ....+-+|..+|..++
T Consensus 124 RlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIa 203 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIA 203 (364)
T ss_pred EEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEE
Confidence 9998873 2221 111 234568888889864 4688899999999999998863 3556778999999999
Q ss_pred ECCCC-CeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCC-CEEEE-EeCCCcEEEEECCC-CcEEEEe
Q 016187 199 FTPDG-KTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADS-TLALS-GSKDGSVHMVNITT-GKVVSSL 274 (394)
Q Consensus 199 ~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~-g~~dg~i~i~d~~~-~~~~~~~ 274 (394)
|...+ +.||+.+.||+||++|++..+....+-..+....+..-+++++.. +++++ +.....|.+.|++. ..++..+
T Consensus 204 f~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L 283 (364)
T KOG0290|consen 204 FLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL 283 (364)
T ss_pred eccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehh
Confidence 99855 478999999999999999876555554444445567778888754 45554 34556799999986 4678899
Q ss_pred ccCCCCEEEEEECCCC-CeEEEEeCCCcEEEEeCCCCCc------ceeccCCCCEEEEEEeCC-CCEEEEEeCCCeEEE
Q 016187 275 VSHTDSIECIGFSRSS-PWAATGSMDQKLIIWDLQHSLP------RSTCDHEDGVTCLMWLGT-SKYVVTGCVDGKVRV 345 (394)
Q Consensus 275 ~~h~~~i~~v~~~~~~-~~l~s~s~dg~i~iwd~~~~~~------~~~~~~~~~v~~~~~~~~-~~~l~sg~~dg~i~i 345 (394)
+.|.+.|+.++|.|.. ..+++++.|..+.|||+..... .........|+.+.|++. +.+++.+ .+.++.+
T Consensus 284 ~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~-~~kklei 361 (364)
T KOG0290|consen 284 RNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAIC-FGKKLEI 361 (364)
T ss_pred hcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEE-ecCeeeE
Confidence 9999999999999975 5799999999999999975322 122335567999999965 4555544 3444433
No 190
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.85 E-value=5.3e-19 Score=170.61 Aligned_cols=296 Identities=18% Similarity=0.289 Sum_probs=208.6
Q ss_pred EEcCCCeeeEeecCcccCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCC-------ceEEEEecCCCCEEEEEEcCCCCE
Q 016187 92 WRINQGDWASEIQGHKDSVSSLAFSMDG-QLLASGGLDGLVQIWDPSSG-------NLKCTLEGPGGGVEWVSWHPRGHI 163 (394)
Q Consensus 92 w~~~~~~~~~~~~~h~~~V~~v~~s~~g-~~l~t~s~d~~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~ 163 (394)
|+. .|..+..+..|...|..++.++.. .+++|||.||+||+|++..- +...++......+..+...+.++.
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 443 466778888999999999988765 99999999999999997532 223344445678899999999999
Q ss_pred EEEecCCCeEEEEeCCcc--c-----eeeee--cccCcCeEEEEECC-CCC-eEEEEeCCCcEEEEcCCCCceEEEEcCC
Q 016187 164 VLAGSEDSTVWMWNADRA--A-----YLNMF--SGHGSSVTCGDFTP-DGK-TICTGSDDATLRVWNPKSGENIHVIRGH 232 (394)
Q Consensus 164 l~~~s~d~~i~iw~~~~~--~-----~~~~~--~~h~~~v~~~~~~~-~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 232 (394)
+|.++.||.|++..++.. + ..+.. ...+..|..-+|.. .+. .|+-+..-+.|..||++.......++..
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 999999999999988651 1 11111 22233344445554 233 6777888899999999887665555543
Q ss_pred CCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEec-cCCCCEEEEEECCCC---CeEEEEe--CCCcEEEEe
Q 016187 233 PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV-SHTDSIECIGFSRSS---PWAATGS--MDQKLIIWD 306 (394)
Q Consensus 233 ~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-~h~~~i~~v~~~~~~---~~l~s~s--~dg~i~iwd 306 (394)
. ..+.|++++++|.+..+++|+..|.+.+||++-+.++.+.. .+..+|+.+..+|-. .+.++++ .-+.|.+|+
T Consensus 1193 ~-~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1193 L-RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWN 1271 (1431)
T ss_pred c-cccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeee
Confidence 3 34579999999999999999999999999999988877653 345778888877653 3444444 467899999
Q ss_pred CCCCCcceecc--------------------CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEE------------
Q 016187 307 LQHSLPRSTCD--------------------HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCV------------ 354 (394)
Q Consensus 307 ~~~~~~~~~~~--------------------~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~------------ 354 (394)
+.++......- +.-....+.+...+.++.+|+.|..|+.||..+.+..
T Consensus 1272 ~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~ 1351 (1431)
T KOG1240|consen 1272 METGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYS 1351 (1431)
T ss_pred cccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCcccccc
Confidence 87654332210 0011122233345678999999999999986321111
Q ss_pred ------------------------------------EE--------eecccCceeEEEEccC-CCEEEEEeCCCcEEEEe
Q 016187 355 ------------------------------------RT--------FSGHRDAIQAISVSAH-QDFLVSVSLDGTARVFE 389 (394)
Q Consensus 355 ------------------------------------~~--------~~~h~~~v~~l~~~~~-~~~l~s~s~dg~i~iw~ 389 (394)
.. -..|..+|++|++-.. ..+|++++.||.|+||.
T Consensus 1352 ~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1352 TNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred ccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 00 0136778888887654 46899999999999995
No 191
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2.3e-19 Score=159.68 Aligned_cols=212 Identities=19% Similarity=0.310 Sum_probs=158.8
Q ss_pred ceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEee-cCcccCEEEEEEcCC--CCEEEEEeCCCcEE
Q 016187 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI-QGHKDSVSSLAFSMD--GQLLASGGLDGLVQ 132 (394)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~-~~h~~~V~~v~~s~~--g~~l~t~s~d~~i~ 132 (394)
..+.+.||++.|+|++|+. ++.+||||+.|-.+.|||....+++..+ .||...|.++.|-|. .++++||+.|..|+
T Consensus 42 lE~eL~GH~GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNA-DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred hhhhhccccceecceeecC-CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 4566899999999999997 5779999999999999999887777665 689999999999984 46889999999999
Q ss_pred EEeCCCC----------ceEEEEecCCCCEEEEEEcCCC-CEEEEecCCCeEEEEeCCccce----------eeeecccC
Q 016187 133 IWDPSSG----------NLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNADRAAY----------LNMFSGHG 191 (394)
Q Consensus 133 vwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~d~~i~iw~~~~~~~----------~~~~~~h~ 191 (394)
++|+... +....+..|...|..++-.|++ +.+.+++.||+++-+|++.... +..+.+.-
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 9998742 1233445677888889999988 7899999999999999875211 11122222
Q ss_pred cCeEEEEECCC-CCeEEEEeCCCcEEEEcCCCC--------c----------eEEEEc-CCCCcc--------cCeEEEE
Q 016187 192 SSVTCGDFTPD-GKTICTGSDDATLRVWNPKSG--------E----------NIHVIR-GHPYHT--------EGLTCLT 243 (394)
Q Consensus 192 ~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~--------~----------~~~~~~-~~~~~~--------~~i~~~~ 243 (394)
-...|+.++|. ..+|+.|+.|-..++||.+.. . ++..+. +|.... ..++.++
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vt 280 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVT 280 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEE
Confidence 35678899994 568999999999999994321 0 111111 111001 1256688
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCC
Q 016187 244 ISADSTLALSGSKDGSVHMVNITTG 268 (394)
Q Consensus 244 ~~~~~~~l~~g~~dg~i~i~d~~~~ 268 (394)
|+|+|.-+++.-....|+++|+..+
T Consensus 281 fnpNGtElLvs~~gEhVYlfdvn~~ 305 (758)
T KOG1310|consen 281 FNPNGTELLVSWGGEHVYLFDVNED 305 (758)
T ss_pred ECCCCcEEEEeeCCeEEEEEeecCC
Confidence 9999998888777778899887654
No 192
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.84 E-value=4e-18 Score=143.03 Aligned_cols=306 Identities=19% Similarity=0.243 Sum_probs=219.9
Q ss_pred EEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceEEEEecC
Q 016187 70 VACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLL-ASGGLDGLVQIWDPSSGNLKCTLEGP 148 (394)
Q Consensus 70 ~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l-~t~s~d~~i~vwd~~~~~~~~~~~~~ 148 (394)
..|+|+ ++++|+.+. .++.|-|.++-+..+.+. --+.|.-+.|..|..++ .....++.|.+|++...+..+++...
T Consensus 14 c~fSp~-g~yiAs~~~-yrlviRd~~tlq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 14 CSFSPC-GNYIASLSR-YRLVIRDSETLQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred eeECCC-CCeeeeeee-eEEEEeccchhhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 468995 678998865 478888887765444332 25678889999888665 45678889999999999999999988
Q ss_pred CCCEEEEEEcCCCC-EEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeC----------------
Q 016187 149 GGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD---------------- 211 (394)
Q Consensus 149 ~~~v~~~~~~~~~~-~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---------------- 211 (394)
..++.+++|+|+|+ +|.+..-+-.|.+|.+.+.+.... +--...+..++|+|+|++.+.++.
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ 169 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWI 169 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHH
Confidence 89999999999995 556666789999999987764332 112334577899999998776542
Q ss_pred --------------------CCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE
Q 016187 212 --------------------DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVV 271 (394)
Q Consensus 212 --------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~ 271 (394)
+..+.+||..-.-.+.... ..-++..+.++|.++++++|+.|+.+++.+--+.+.+
T Consensus 170 ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe----~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f 245 (447)
T KOG4497|consen 170 LLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE----RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPF 245 (447)
T ss_pred HHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee----eccceeEEEeccccceEEeeccchhhhhhceeeeeeh
Confidence 1234455432111111111 2346889999999999999999999987552211110
Q ss_pred EE------------------------------------------------------------ecc------CCCCEEEEE
Q 016187 272 SS------------------------------------------------------------LVS------HTDSIECIG 285 (394)
Q Consensus 272 ~~------------------------------------------------------------~~~------h~~~i~~v~ 285 (394)
.. ++. ..-.+.-++
T Consensus 246 ~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~la 325 (447)
T KOG4497|consen 246 GEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLA 325 (447)
T ss_pred hhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceee
Confidence 00 000 011345689
Q ss_pred ECCCCCeEEEEeC--CCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCc
Q 016187 286 FSRSSPWAATGSM--DQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDA 363 (394)
Q Consensus 286 ~~~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~ 363 (394)
|++|..++++-.. -+.+-+||++............+|....|.|....|+......++++|......++.. .+.+-.
T Consensus 326 fs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~v-P~~GF~ 404 (447)
T KOG4497|consen 326 FSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV-PKKGFN 404 (447)
T ss_pred ecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEec-CCCCce
Confidence 9999999998643 4678999999876666666778899999999999999888888899997655455543 223356
Q ss_pred eeEEEEccCCCEEEEEeCCCc
Q 016187 364 IQAISVSAHQDFLVSVSLDGT 384 (394)
Q Consensus 364 v~~l~~~~~~~~l~s~s~dg~ 384 (394)
|..+.|.-+|..++-++.|..
T Consensus 405 i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 405 IQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred eeeEEecCCCcEEEEEcCCce
Confidence 999999999999999988864
No 193
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.84 E-value=1.4e-18 Score=162.41 Aligned_cols=264 Identities=19% Similarity=0.234 Sum_probs=193.7
Q ss_pred CCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCce--EE----EEecCCCCEEEEEEc
Q 016187 86 DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG-QLLASGGLDGLVQIWDPSSGNL--KC----TLEGPGGGVEWVSWH 158 (394)
Q Consensus 86 d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g-~~l~t~s~d~~i~vwd~~~~~~--~~----~~~~~~~~v~~~~~~ 158 (394)
++.+.||++.........-.-...|+|++|+|.. .+||.|..+|+|.+||+..+.. .. ....|..++..+.|.
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred CceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 3478899987653222223346789999999955 6788899999999999987654 21 223577899999997
Q ss_pred CCCC--EEEEecCCCeEEEEeCCccce------eeeec------ccCcCeEEEEECC-CCCeEEEEeCCCcEEEEc---C
Q 016187 159 PRGH--IVLAGSEDSTVWMWNADRAAY------LNMFS------GHGSSVTCGDFTP-DGKTICTGSDDATLRVWN---P 220 (394)
Q Consensus 159 ~~~~--~l~~~s~d~~i~iw~~~~~~~------~~~~~------~h~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd---~ 220 (394)
.+.. -+++++.||.|..|+++.... ..... .....+++++|.+ +-..++.|+..|.|..=. .
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 7544 499999999999998754221 00000 1234578899988 556789999999987633 2
Q ss_pred CCCc-eE-EEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCcEEEEeccCCCCEEEEEECCCCC-eEEEE
Q 016187 221 KSGE-NI-HVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT-TGKVVSSLVSHTDSIECIGFSRSSP-WAATG 296 (394)
Q Consensus 221 ~~~~-~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~-~~~~~~~~~~h~~~i~~v~~~~~~~-~l~s~ 296 (394)
+... .+ .....+..|..+++++.++|-+..++..+.|-+++||... ...++..+..+...+++++|||..+ .++++
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~ 460 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATV 460 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEE
Confidence 2221 01 1122445678899999999988766666669999999987 6677888888888999999999876 67888
Q ss_pred eCCCcEEEEeCCCCCcceec---cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 016187 297 SMDQKLIIWDLQHSLPRSTC---DHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSL 349 (394)
Q Consensus 297 s~dg~i~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~ 349 (394)
..||.|.|||+......... .+....+.+.|++.++.|+.|...|++.+|++.
T Consensus 461 d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 461 DGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred cCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 88999999999654332221 124556778888889999999999999999974
No 194
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.84 E-value=3.3e-19 Score=158.33 Aligned_cols=262 Identities=18% Similarity=0.246 Sum_probs=188.7
Q ss_pred CcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEE-EEEcC-------CCCEEEEecCCCeEEEE
Q 016187 105 GHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEW-VSWHP-------RGHIVLAGSEDSTVWMW 176 (394)
Q Consensus 105 ~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~-~~~~~-------~~~~l~~~s~d~~i~iw 176 (394)
.|...|.|+.|+.....+.+++.+..++-||+.+. ....+..+...+.. +..-+ ....++.++.||.+.+.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~-s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRD-SVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccch-hhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 46677789999988777766654444444454332 22222222222211 11111 23478899999999988
Q ss_pred eCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeC
Q 016187 177 NADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK 256 (394)
Q Consensus 177 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~ 256 (394)
+-. ++..+...+|.+.+.+..|+|+|.-|++++.||.|++|.- +|-...++. ....+|.|++|.|+...++-+.
T Consensus 91 ~k~-~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~---Q~~~~v~c~~W~p~S~~vl~c~- 164 (737)
T KOG1524|consen 91 NKS-ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVV---QNEESIRCARWAPNSNSIVFCQ- 164 (737)
T ss_pred ccc-chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHh---hcCceeEEEEECCCCCceEEec-
Confidence 643 4556778899999999999999999999999999999974 332211221 1356799999999987766553
Q ss_pred CCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEE
Q 016187 257 DGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVT 336 (394)
Q Consensus 257 dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 336 (394)
.+.+.|=.+.....+-...+|.+-|.++.|++...++++|+.|-+.++||-..........|+.+|++++|.|+ ...+.
T Consensus 165 g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v 243 (737)
T KOG1524|consen 165 GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLL 243 (737)
T ss_pred CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cceee
Confidence 35566666666656667889999999999999999999999999999999876655556678999999999999 45555
Q ss_pred EeCCCeEEEEECCCCeEEEEe-ecccCceeEEEEccCCCEEEEEeCCCcEEE
Q 016187 337 GCVDGKVRVWDSLSGDCVRTF-SGHRDAIQAISVSAHQDFLVSVSLDGTARV 387 (394)
Q Consensus 337 g~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~s~dg~i~i 387 (394)
||.+ +++ | +...+.|..++|++||..++.|...|.+.+
T Consensus 244 ~S~n-t~R------------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 244 WSYN-TAR------------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeee-eee------------ecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 5422 222 3 234578999999999999999998887654
No 195
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=2.1e-18 Score=138.96 Aligned_cols=230 Identities=14% Similarity=0.227 Sum_probs=171.1
Q ss_pred EEEEEEcCCCCEEEEecCCCeEEEEeCCc----------cceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCC
Q 016187 152 VEWVSWHPRGHIVLAGSEDSTVWMWNADR----------AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPK 221 (394)
Q Consensus 152 v~~~~~~~~~~~l~~~s~d~~i~iw~~~~----------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 221 (394)
|..-+|+|.+++|++|+.+|.|.+..+++ ...+...++|.+++..++|. ..+|++|+ ||.|+=|..+
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~ 89 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWN 89 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeeh
Confidence 34457899999999999999999998753 23345568999999999998 34667766 5999998765
Q ss_pred CCce-EE---EEc-CCCC-----cccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCC
Q 016187 222 SGEN-IH---VIR-GHPY-----HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSP 291 (394)
Q Consensus 222 ~~~~-~~---~~~-~~~~-----~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~ 291 (394)
.... .. .++ ..+. ....|+.+...|..+-++.++.|+.++-||+.+|+....+.+|++.|.++.--....
T Consensus 90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~ 169 (325)
T KOG0649|consen 90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANG 169 (325)
T ss_pred hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCc
Confidence 4321 00 000 0111 224588999999887777777999999999999999999999999999999877777
Q ss_pred eEEEEeCCCcEEEEeCCCCCcceecc---CC--------CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecc
Q 016187 292 WAATGSMDQKLIIWDLQHSLPRSTCD---HE--------DGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGH 360 (394)
Q Consensus 292 ~l~s~s~dg~i~iwd~~~~~~~~~~~---~~--------~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h 360 (394)
.+++|+.||++++||+++.+...... |+ ..|-+++ .+..+++.|+ .-.+.+|+++..++...|.-
T Consensus 170 qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGg-Gp~lslwhLrsse~t~vfpi- 245 (325)
T KOG0649|consen 170 QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGG-GPKLSLWHLRSSESTCVFPI- 245 (325)
T ss_pred ceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecC-CCceeEEeccCCCceEEEec-
Confidence 89999999999999998875544332 11 1234443 3556777664 56799999999988877763
Q ss_pred cCceeEEEEccCCCEEEEEeCCCcEEEEec
Q 016187 361 RDAIQAISVSAHQDFLVSVSLDGTARVFEI 390 (394)
Q Consensus 361 ~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~ 390 (394)
..+|..+.|-. +.++++|..+.|.-|.+
T Consensus 246 pa~v~~v~F~~--d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 246 PARVHLVDFVD--DCVLIGGEGNHVQSYTL 273 (325)
T ss_pred ccceeEeeeec--ceEEEeccccceeeeee
Confidence 55677777753 67778887777777764
No 196
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.83 E-value=4.4e-18 Score=145.89 Aligned_cols=205 Identities=20% Similarity=0.327 Sum_probs=159.9
Q ss_pred eecCcccCEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCC-------ceEEEEecCCCCEEEEEEcCCC-CEEEEecCCCe
Q 016187 102 EIQGHKDSVSSLAFSMD-GQLLASGGLDGLVQIWDPSSG-------NLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDST 172 (394)
Q Consensus 102 ~~~~h~~~V~~v~~s~~-g~~l~t~s~d~~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~d~~ 172 (394)
.+.||+++|..++|+|- ...+|+||.|.+|+||.+..+ +....+.+|...|.-++|||.. +.|++++.|++
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 35789999999999995 468999999999999997654 3456788999999999999975 58899999999
Q ss_pred EEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEE
Q 016187 173 VWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL 252 (394)
Q Consensus 173 i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 252 (394)
|.+|++.++..+-.+. |...|.++.|+.+|.+|++++.|+.|||||.++++.+..-..|..+ .-.-+.|-.++.++-
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~--k~~Raifl~~g~i~t 232 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA--KPARAIFLASGKIFT 232 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCC--CcceeEEeccCceee
Confidence 9999999998777776 9999999999999999999999999999999999887665444322 222344556777555
Q ss_pred EEe---CCCcEEEEECCCCc---EEEEeccCCCCEEEEEECCCCCeEEE-EeCCCcEEEEeCCCC
Q 016187 253 SGS---KDGSVHMVNITTGK---VVSSLVSHTDSIECIGFSRSSPWAAT-GSMDQKLIIWDLQHS 310 (394)
Q Consensus 253 ~g~---~dg~i~i~d~~~~~---~~~~~~~h~~~i~~v~~~~~~~~l~s-~s~dg~i~iwd~~~~ 310 (394)
+|- .+..+-+||..+.. .+..+. -...|.---+.++..++.. |=.|+.|+.|.+...
T Consensus 233 TGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 233 TGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred eccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 553 57789999876543 233333 2344555557888776654 556899999988654
No 197
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.82 E-value=2.2e-18 Score=148.28 Aligned_cols=250 Identities=23% Similarity=0.296 Sum_probs=178.7
Q ss_pred ceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcC--------C------C--eeeEeecCcccCEEEEEEcCCC
Q 016187 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRIN--------Q------G--DWASEIQGHKDSVSSLAFSMDG 119 (394)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~--------~------~--~~~~~~~~h~~~V~~v~~s~~g 119 (394)
....+..|..+|+++.|+|+ +.+||||+.++.+.+|... + . .....+.+|.+.|+.++|+|++
T Consensus 57 y~s~Ls~H~~aVN~vRf~p~-gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~ 135 (434)
T KOG1009|consen 57 YLSSLSRHTRAVNVVRFSPD-GELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS 135 (434)
T ss_pred EeecccCCcceeEEEEEcCC-cCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC
Confidence 45667899999999999995 6799999999999999876 2 1 1335688999999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeec-----------
Q 016187 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS----------- 188 (394)
Q Consensus 120 ~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~----------- 188 (394)
.++++++.|.++++||+..|.....+..|...+..++|.|-++++++-+.|...+.+.....+.++...
T Consensus 136 ~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~ 215 (434)
T KOG1009|consen 136 NFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNE 215 (434)
T ss_pred ceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCC
Confidence 999999999999999999999999999999999999999999999999999877776654332221110
Q ss_pred --------ccC----cCeEEEEECCCCCeEEEEeC----CCcE-----EEEcCCCCc-eEEEEcCCCCcccCeEEEEEc-
Q 016187 189 --------GHG----SSVTCGDFTPDGKTICTGSD----DATL-----RVWNPKSGE-NIHVIRGHPYHTEGLTCLTIS- 245 (394)
Q Consensus 189 --------~h~----~~v~~~~~~~~~~~l~s~~~----dg~i-----~vwd~~~~~-~~~~~~~~~~~~~~i~~~~~~- 245 (394)
.|. .-...++|+|+|.+|++.+. .+.+ .+++-+.-+ ....+. ....+...+.++
T Consensus 216 ~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp---~~~k~~lavr~~p 292 (434)
T KOG1009|consen 216 REGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLP---SPKKPALAVRFSP 292 (434)
T ss_pred CCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecC---CCCcceEEEEeee
Confidence 011 12345789999999887642 2222 233221111 111111 111112222222
Q ss_pred -----------------CCCCEEEEEeCCCcEEEEECCCCcEEEEec-cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 016187 246 -----------------ADSTLALSGSKDGSVHMVNITTGKVVSSLV-SHTDSIECIGFSRSSPWAATGSMDQKLIIWDL 307 (394)
Q Consensus 246 -----------------~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~ 307 (394)
|-.-.++.+ ....+.+||.++..++.... -|-..|+.++|++++..|+..|.||...+.-+
T Consensus 293 Vy~elrp~~~~~~~~~lpyrlvfaiA-t~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtf 371 (434)
T KOG1009|consen 293 VYYELRPLSSEKFLFVLPYRLVFAIA-TKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTF 371 (434)
T ss_pred eEEEeccccccccccccccceEEEEe-ecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEE
Confidence 222234444 45679999998877665543 37789999999999999999999998877655
Q ss_pred CCC
Q 016187 308 QHS 310 (394)
Q Consensus 308 ~~~ 310 (394)
...
T Consensus 372 e~~ 374 (434)
T KOG1009|consen 372 EPW 374 (434)
T ss_pred cch
Confidence 443
No 198
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.82 E-value=1.4e-17 Score=155.64 Aligned_cols=263 Identities=17% Similarity=0.253 Sum_probs=188.8
Q ss_pred CcEEEEeCCCCceEEEEecCCCCEEEEEEcCCC-CEEEEecCCCeEEEEeCCccce--e----eeecccCcCeEEEEECC
Q 016187 129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNADRAAY--L----NMFSGHGSSVTCGDFTP 201 (394)
Q Consensus 129 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~d~~i~iw~~~~~~~--~----~~~~~h~~~v~~~~~~~ 201 (394)
+.+.||++.........-.....|.++.|+|.. ++++.|..+|+|.+||+..... . .....|..+++.+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 468899988763222233356789999999965 5778888999999999986544 1 22345888999999876
Q ss_pred CC--CeEEEEeCCCcEEEEcCCCCceE-E--EEc--C----CCCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC--
Q 016187 202 DG--KTICTGSDDATLRVWNPKSGENI-H--VIR--G----HPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITT-- 267 (394)
Q Consensus 202 ~~--~~l~s~~~dg~i~vwd~~~~~~~-~--~~~--~----~~~~~~~i~~~~~~~-~~~~l~~g~~dg~i~i~d~~~-- 267 (394)
+. .-+++++.||.|..|+++.-... . ... . .......++++.|.+ +...+++|+..|.|..-+-..
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence 44 44999999999999987643221 0 000 0 001234688899988 456789999999998744322
Q ss_pred -Cc-----EEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCC-CCCcce-eccCCCCEEEEEEeCCCC-EEEEEe
Q 016187 268 -GK-----VVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQ-HSLPRS-TCDHEDGVTCLMWLGTSK-YVVTGC 338 (394)
Q Consensus 268 -~~-----~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~-~~~~~~~v~~~~~~~~~~-~l~sg~ 338 (394)
.. .+..+..|.++|+++.++|=+..+...+.|-+++||... ...+.. ...+...|++++|+|... .++++.
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d 461 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVD 461 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEc
Confidence 21 233556789999999999987654444449999999876 333332 234555699999999864 566777
Q ss_pred CCCeEEEEECCCC--eEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 339 VDGKVRVWDSLSG--DCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 339 ~dg~i~iwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
.||.|.+||+... +.+.+..-+....+.+.|++.++.|+.|...|++.+|++.
T Consensus 462 ~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 462 GDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred CCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 8999999998643 3445555556667888888899999999999999999985
No 199
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.81 E-value=3.5e-16 Score=133.42 Aligned_cols=278 Identities=15% Similarity=0.200 Sum_probs=197.9
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecC--CCeEEEEeCCcccee
Q 016187 107 KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE--DSTVWMWNADRAAYL 184 (394)
Q Consensus 107 ~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~--d~~i~iw~~~~~~~~ 184 (394)
...+..+.|..+...|..|+.|| -+++.................|--+-|+. .+++..+. -+.+++++.+....+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceE
Confidence 45577788999999999999998 57777665443222222222343444553 34444443 346899999888777
Q ss_pred eeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEE--eCCCcEEE
Q 016187 185 NMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSG--SKDGSVHM 262 (394)
Q Consensus 185 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g--~~dg~i~i 262 (394)
+.+. ...+|.++.++. ++|+.+-.+. |.|||+++.+.++++...+.+..++..+++++.+.+++.= ...|.|.+
T Consensus 82 Ce~~-fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l 157 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVL 157 (391)
T ss_pred EEEe-cCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEE
Confidence 7654 355788888864 4566655544 9999999999998887665566678777777777787753 34689999
Q ss_pred EECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCc-EEEEeCCCCCcceecc---CCCCEEEEEEeCCCCEEEEEe
Q 016187 263 VNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQK-LIIWDLQHSLPRSTCD---HEDGVTCLMWLGTSKYVVTGC 338 (394)
Q Consensus 263 ~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~sg~ 338 (394)
||+.+-+.+..+.+|.+++.|++|+++|.+|||+|..|+ ||+|.+..+....... ....|.+++|+|++++|++.|
T Consensus 158 ~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS 237 (391)
T KOG2110|consen 158 FDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASS 237 (391)
T ss_pred EEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEec
Confidence 999999999999999999999999999999999999998 6899987654433221 134588999999999999999
Q ss_pred CCCeEEEEECCCCe---------------------------E-------EEEee---cccCce-eEEEEc--cCCCEEEE
Q 016187 339 VDGKVRVWDSLSGD---------------------------C-------VRTFS---GHRDAI-QAISVS--AHQDFLVS 378 (394)
Q Consensus 339 ~dg~i~iwd~~~~~---------------------------~-------~~~~~---~h~~~v-~~l~~~--~~~~~l~s 378 (394)
..++|.+|.+.... + .+.|. .-.... ....+. +..+.+..
T Consensus 238 ~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~v 317 (391)
T KOG2110|consen 238 NTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLV 317 (391)
T ss_pred CCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEE
Confidence 99999999753211 0 01110 001111 122333 46788999
Q ss_pred EeCCCcEEEEecc
Q 016187 379 VSLDGTARVFEIA 391 (394)
Q Consensus 379 ~s~dg~i~iw~~~ 391 (394)
++.||....|.+.
T Consensus 318 as~dG~~y~y~l~ 330 (391)
T KOG2110|consen 318 ASYDGHLYSYRLP 330 (391)
T ss_pred EEcCCeEEEEEcC
Confidence 9999999999875
No 200
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.80 E-value=2.8e-17 Score=137.48 Aligned_cols=205 Identities=18% Similarity=0.236 Sum_probs=165.5
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc---eEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeC-Ccc
Q 016187 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN---LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNA-DRA 181 (394)
Q Consensus 106 h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~-~~~ 181 (394)
-.++|+|.+|++|++.+|.+-....|.||.....+ ..+++..|...|+.+.|+|..+.|++|+.|..-++|.. ..+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 35789999999999999999999999999877654 56788999999999999999999999999999999998 443
Q ss_pred c--eeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcC-CCCcccCeEEEEEcCCCCEEEEEeCCC
Q 016187 182 A--YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRG-HPYHTEGLTCLTISADSTLALSGSKDG 258 (394)
Q Consensus 182 ~--~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~g~~dg 258 (394)
+ ....+..+....+++.|+|.++.||+|+..+.|.||-.+.....-.-+. ..-....|++++|+|++-++++|+.|+
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~ 168 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG 168 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc
Confidence 3 2233455788899999999999999999999999998765443211110 011345699999999999999999999
Q ss_pred cEEEEECC------------------CCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 016187 259 SVHMVNIT------------------TGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHS 310 (394)
Q Consensus 259 ~i~i~d~~------------------~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~ 310 (394)
..++|..- -|+++.++....+.+..+.|+|+|..|+-.+.|+++.+-|....
T Consensus 169 k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 169 KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 99998631 12333344345678999999999999999999999999887654
No 201
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.80 E-value=6.4e-18 Score=158.43 Aligned_cols=233 Identities=17% Similarity=0.149 Sum_probs=162.0
Q ss_pred CCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCC
Q 016187 86 DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD---GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162 (394)
Q Consensus 86 d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d---~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (394)
+..+++||..... ...+..|...+.+++|||||++|+.++.+ ..|++||+.+++.... ....+....++|+|+++
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG~ 260 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDGS 260 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCCC
Confidence 5789999986555 45677788899999999999999887754 3699999988764322 21222344689999999
Q ss_pred EEEEec-CCCeEEE--EeCCccceeeeecccCcCeEEEEECCCCCeEEEEe-CCCcEEEEcCCCC-ceEEEEcCCCCccc
Q 016187 163 IVLAGS-EDSTVWM--WNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS-DDATLRVWNPKSG-ENIHVIRGHPYHTE 237 (394)
Q Consensus 163 ~l~~~s-~d~~i~i--w~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~-~~~~~~~~~~~~~~ 237 (394)
.|+.++ .++.+.+ |++.++.. ..+..+...+....|+|||+.|+.++ .++..+||++... .....+ .+ .
T Consensus 261 ~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~---~- 334 (429)
T PRK01742 261 RLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GG---R- 334 (429)
T ss_pred EEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cC---C-
Confidence 887654 6776554 56665553 44555666778899999999877554 5788888876432 222222 21 1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC---CCCCcce
Q 016187 238 GLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDL---QHSLPRS 314 (394)
Q Consensus 238 ~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~---~~~~~~~ 314 (394)
. .+..++|+++.++..+.++ +.+||+.+++.......+ ....+.|+|++.+++.++.++...+|.+ .....+.
T Consensus 335 ~-~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~ 410 (429)
T PRK01742 335 G-YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKAR 410 (429)
T ss_pred C-CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEE
Confidence 1 3467999999998887765 556999888654322222 3356789999999999999998887765 3333333
Q ss_pred eccCCCCEEEEEEeCC
Q 016187 315 TCDHEDGVTCLMWLGT 330 (394)
Q Consensus 315 ~~~~~~~v~~~~~~~~ 330 (394)
...|...+...+|+|-
T Consensus 411 l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 411 LPGSDGQVKFPAWSPY 426 (429)
T ss_pred ccCCCCCCCCcccCCC
Confidence 4456666778888874
No 202
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.80 E-value=7.8e-18 Score=157.87 Aligned_cols=232 Identities=16% Similarity=0.146 Sum_probs=164.5
Q ss_pred CCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCC---CeEEEEeCCccce--eeeecccCcCeEEEEECCC
Q 016187 128 DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED---STVWMWNADRAAY--LNMFSGHGSSVTCGDFTPD 202 (394)
Q Consensus 128 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---~~i~iw~~~~~~~--~~~~~~h~~~v~~~~~~~~ 202 (394)
+..|.+||..... ...+..+...+...+|+|+++.|+.++.+ ..|++||+.+++. +..+.+|. ...+|+||
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~---~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN---GAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc---CceeECCC
Confidence 4689999986554 44566677789999999999988877643 4799999987653 33344443 35799999
Q ss_pred CCeEEEEe-CCCcEEEE--cCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCC-cEEEEeccC
Q 016187 203 GKTICTGS-DDATLRVW--NPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSG-SKDGSVHMVNITTG-KVVSSLVSH 277 (394)
Q Consensus 203 ~~~l~s~~-~dg~i~vw--d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g-~~dg~i~i~d~~~~-~~~~~~~~h 277 (394)
|+.|+.++ .+|.+.|| |+.+++. ..+.. +...+....|+|+|+.++.. ..++...+|++... .....+ .+
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~---~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~ 333 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTP-SQLTS---GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GG 333 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCe-Eeecc---CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cC
Confidence 99888764 67876655 6655543 33332 23346678999999976654 46788888876432 222222 33
Q ss_pred CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC--CCCeEEE
Q 016187 278 TDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDS--LSGDCVR 355 (394)
Q Consensus 278 ~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~--~~~~~~~ 355 (394)
.. ....|+|++++++..+.++ +.+||+.+......... .......|+|++++|+.++.+|.+++|.+ .+|+.++
T Consensus 334 ~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~ 409 (429)
T PRK01742 334 RG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKA 409 (429)
T ss_pred CC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceE
Confidence 33 4578999999998887765 55699876543322211 12345789999999999999998888875 4688899
Q ss_pred EeecccCceeEEEEccC
Q 016187 356 TFSGHRDAIQAISVSAH 372 (394)
Q Consensus 356 ~~~~h~~~v~~l~~~~~ 372 (394)
.+.+|.+.+...+|+|-
T Consensus 410 ~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 410 RLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EccCCCCCCCCcccCCC
Confidence 99999988999999984
No 203
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.80 E-value=4.2e-16 Score=141.79 Aligned_cols=309 Identities=17% Similarity=0.149 Sum_probs=197.4
Q ss_pred EEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcC
Q 016187 80 VATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP 159 (394)
Q Consensus 80 lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 159 (394)
+.+-..++.+.+.|..+.+.+..+......-..+.|+|||+++++++.|+.|.++|+.+++.+.+++.. .....+++++
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~ 87 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSP 87 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcC
Confidence 345667899999999999999999865554456789999999999999999999999999998888754 3467799999
Q ss_pred CCCEEEEec-CCCeEEEEeCCccceeeeeccc-------CcCeEEEEECCCCCeEEEE-eCCCcEEEEcCCCCceEE--E
Q 016187 160 RGHIVLAGS-EDSTVWMWNADRAAYLNMFSGH-------GSSVTCGDFTPDGKTICTG-SDDATLRVWNPKSGENIH--V 228 (394)
Q Consensus 160 ~~~~l~~~s-~d~~i~iw~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~--~ 228 (394)
+|++++++. .++.+.++|.++.+.++.+... ...+..+..+|....++.. -..+.|-+-|....+.+. .
T Consensus 88 DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~ 167 (369)
T PF02239_consen 88 DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTT 167 (369)
T ss_dssp TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEE
T ss_pred CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceee
Confidence 999887665 6899999999998888776543 2356677778887755554 445888888877655432 2
Q ss_pred EcCCCCcccCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCcEEEEec----cCCCCEEEEEECCCC-CeEEE-------
Q 016187 229 IRGHPYHTEGLTCLTISADSTLALSG-SKDGSVHMVNITTGKVVSSLV----SHTDSIECIGFSRSS-PWAAT------- 295 (394)
Q Consensus 229 ~~~~~~~~~~i~~~~~~~~~~~l~~g-~~dg~i~i~d~~~~~~~~~~~----~h~~~i~~v~~~~~~-~~l~s------- 295 (394)
+.. .....-..++|++++++++ ..+..|-++|..+++.+..+. .|..+...+ .+|.. ..-++
T Consensus 168 i~~----g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~ 242 (369)
T PF02239_consen 168 IKV----GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFA 242 (369)
T ss_dssp EE------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSE
T ss_pred ecc----cccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeecccccee
Confidence 221 2235567899999987664 567799999999988776553 233444433 23322 21222
Q ss_pred --EeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEE----eCCCeEEEEECCCCeEEEEeecc-cCceeEEE
Q 016187 296 --GSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTG----CVDGKVRVWDSLSGDCVRTFSGH-RDAIQAIS 368 (394)
Q Consensus 296 --~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg----~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~ 368 (394)
.-....+.+||...............-.-+..+|++++|.+. ...+.|.++|..+.+.+..+... ...+.++.
T Consensus 243 ~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~e 322 (369)
T PF02239_consen 243 IPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHME 322 (369)
T ss_dssp EEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEE
T ss_pred cccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccE
Confidence 222223444555544433333322222566779999999987 44589999999999888887632 23588999
Q ss_pred EccCCCEEEEEeCC--CcEEEEeccCCC
Q 016187 369 VSAHQDFLVSVSLD--GTARVFEIADFK 394 (394)
Q Consensus 369 ~~~~~~~l~s~s~d--g~i~iw~~~~~~ 394 (394)
|+++|+.+.....+ +.|.+||-+++|
T Consensus 323 f~~dG~~v~vS~~~~~~~i~v~D~~Tl~ 350 (369)
T PF02239_consen 323 FNPDGKEVWVSVWDGNGAIVVYDAKTLK 350 (369)
T ss_dssp E-TTSSEEEEEEE--TTEEEEEETTTTE
T ss_pred ECCCCCEEEEEEecCCCEEEEEECCCcE
Confidence 99999976544433 379999988764
No 204
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=2.1e-18 Score=149.30 Aligned_cols=196 Identities=23% Similarity=0.266 Sum_probs=151.9
Q ss_pred EEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEe-
Q 016187 68 YSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE- 146 (394)
Q Consensus 68 ~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~- 146 (394)
.+++|+++ +.++|+|+.||++|+|+..+...+.....|...|.++.|||||++|++-+.| ..+||++.+|..+....
T Consensus 148 k~vaf~~~-gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGD-GSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCC-CCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 67889884 5689999999999999998888888888999999999999999999999999 89999999995544333
Q ss_pred -cCCCCEEEEEEcCCC---CEEEEe--cCCCeEEEEeCCccc---e--eeeecccCcCeEEEEECCCCCeEEEEeCCCcE
Q 016187 147 -GPGGGVEWVSWHPRG---HIVLAG--SEDSTVWMWNADRAA---Y--LNMFSGHGSSVTCGDFTPDGKTICTGSDDATL 215 (394)
Q Consensus 147 -~~~~~v~~~~~~~~~---~~l~~~--s~d~~i~iw~~~~~~---~--~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i 215 (394)
.....+..+.|+.++ .+++.+ ..-+.++.|++.... . .+....-...|++++.+++|++++.|+.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 223345667888776 333333 334566666543211 1 11111223468999999999999999999999
Q ss_pred EEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 016187 216 RVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT 267 (394)
Q Consensus 216 ~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~ 267 (394)
-|++..+-+.++.++. .|...|+.+.|+|+.+++++-+.+....+..+.-
T Consensus 306 ai~~~~~lq~~~~vk~--aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKE--AHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEeceeeeeEeehh--hheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999998888777663 4778899999999999999988888888776643
No 205
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.80 E-value=1.7e-16 Score=135.30 Aligned_cols=272 Identities=18% Similarity=0.203 Sum_probs=179.5
Q ss_pred EEEEecCC--CeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecC---CCCEE
Q 016187 79 LVATGGGD--DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGP---GGGVE 153 (394)
Q Consensus 79 ~lasg~~d--~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~---~~~v~ 153 (394)
|+|-.+.+ +.+++.++..+..+..+. -..+|.+|.++. ++|+.+-.+ .|.|||+++.+.++++... ...+.
T Consensus 58 LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~ 133 (391)
T KOG2110|consen 58 LVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLC 133 (391)
T ss_pred eeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceE
Confidence 44444433 447788887766665554 345788888865 467766655 4999999999999887643 33455
Q ss_pred EEEEcCCCCEEEEec--CCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCc-EEEEcCCCCceEEEEc
Q 016187 154 WVSWHPRGHIVLAGS--EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT-LRVWNPKSGENIHVIR 230 (394)
Q Consensus 154 ~~~~~~~~~~l~~~s--~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~-i~vwd~~~~~~~~~~~ 230 (394)
++++++.+.+++--+ ..|.|.+||..+.+....+..|.+++.+++|+++|.+|||++..|+ |||+.+.+|+.+..++
T Consensus 134 AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFR 213 (391)
T KOG2110|consen 134 ALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFR 213 (391)
T ss_pred eeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeee
Confidence 555555566776532 3689999999999999999999999999999999999999999998 6999999999998887
Q ss_pred CCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEE-CCCCCeEEEEeC-CCcEEEEeCC
Q 016187 231 GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGF-SRSSPWAATGSM-DQKLIIWDLQ 308 (394)
Q Consensus 231 ~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~-~~~~~~l~s~s~-dg~i~iwd~~ 308 (394)
.... ...|.+++|+|++++|.+.+..++|++|.+.... ... ...+-....+ .+-.+. +++-. .+....||..
T Consensus 214 RG~~-~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~-~~~---~~~p~~~~~~~~~~sk~-~~sylps~V~~~~~~~ 287 (391)
T KOG2110|consen 214 RGTY-PVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS-NNP---PESPTAGTSWFGKVSKA-ATSYLPSQVSSVLDQS 287 (391)
T ss_pred CCce-eeEEEEEEECCCCCeEEEecCCCeEEEEEecccc-cCC---CCCCCCCCcccchhhhh-hhhhcchhhhhhhhhc
Confidence 5433 4568899999999999999999999999987543 111 1100000000 000000 00000 1112234544
Q ss_pred CCCcceeccCCC--CEEEEEEeCCCCEEEEEeCCCeEEEEECC--CCeEEEEeecc
Q 016187 309 HSLPRSTCDHED--GVTCLMWLGTSKYVVTGCVDGKVRVWDSL--SGDCVRTFSGH 360 (394)
Q Consensus 309 ~~~~~~~~~~~~--~v~~~~~~~~~~~l~sg~~dg~i~iwd~~--~~~~~~~~~~h 360 (394)
............ .+..+.-.+..+++..++.||.++.|.+. +|.....++.|
T Consensus 288 R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~gGec~lik~h 343 (391)
T KOG2110|consen 288 RKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPKEGGECALIKRH 343 (391)
T ss_pred cceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCCCCceeEEEEee
Confidence 332222222122 23333333577899999999999999753 34444444434
No 206
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=2.4e-18 Score=151.25 Aligned_cols=295 Identities=19% Similarity=0.276 Sum_probs=219.5
Q ss_pred eeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEee-cCcccCEEEEEEcCC--CCEEEEEeCCCcEEE
Q 016187 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI-QGHKDSVSSLAFSMD--GQLLASGGLDGLVQI 133 (394)
Q Consensus 57 ~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~-~~h~~~V~~v~~s~~--g~~l~t~s~d~~i~v 133 (394)
...|.+|.+.|+.|.|.. .+.+|+|||.|..+.+||...+.....+ .||...|....|-|. .+.+++++.||.|++
T Consensus 135 ~~kL~~H~GcVntV~FN~-~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQ-RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhcccCCCCccceeeecc-cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 334678999999999986 5789999999999999999887766554 579999999999884 367999999999998
Q ss_pred EeCC-CCce--EEEEecCCCCEEEEEEcCCCC-EEEEecCCCeEEEEeCCccceeee---ecccCc---CeEEEEECCCC
Q 016187 134 WDPS-SGNL--KCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNM---FSGHGS---SVTCGDFTPDG 203 (394)
Q Consensus 134 wd~~-~~~~--~~~~~~~~~~v~~~~~~~~~~-~l~~~s~d~~i~iw~~~~~~~~~~---~~~h~~---~v~~~~~~~~~ 203 (394)
=.+. ++.+ ...+..|.++|..++.-|... .|++++.|+.+.-+|++....... -..+.. ....++..|..
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 7654 3332 234567889999999999764 689999999999999876432211 122222 45678888854
Q ss_pred -CeEEEEeCCCcEEEEcCCCCce------EEEEcCCC---CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--C---
Q 016187 204 -KTICTGSDDATLRVWNPKSGEN------IHVIRGHP---YHTEGLTCLTISADSTLALSGSKDGSVHMVNITT--G--- 268 (394)
Q Consensus 204 -~~l~s~~~dg~i~vwd~~~~~~------~~~~~~~~---~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~--~--- 268 (394)
..+++++.|..+|+||.+.-.. +..+..+. -..-.|+|++++.++.-++++..|-.|+++.-.- |
T Consensus 294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p 373 (559)
T KOG1334|consen 294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEP 373 (559)
T ss_pred ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCC
Confidence 4899999999999999865321 12221111 1223599999999999899999999999995321 2
Q ss_pred -------cEEEE-eccCCCC--EEEEE-ECCCCCeEEEEeCCCcEEEEeCCCCCcceec-cCCCCEEEEEEeCCCCEEEE
Q 016187 269 -------KVVSS-LVSHTDS--IECIG-FSRSSPWAATGSMDQKLIIWDLQHSLPRSTC-DHEDGVTCLMWLGTSKYVVT 336 (394)
Q Consensus 269 -------~~~~~-~~~h~~~--i~~v~-~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s 336 (394)
..+.. +++|... |..+- |.|...|+++||.-|.|.||+-.+....... +-...|+|+.-+|.-..||+
T Consensus 374 ~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAs 453 (559)
T KOG1334|consen 374 DPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLAS 453 (559)
T ss_pred CCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhc
Confidence 22233 5677543 55554 5789999999999999999997766444332 33337999999999999999
Q ss_pred EeCCCeEEEEECCCCe
Q 016187 337 GCVDGKVRVWDSLSGD 352 (394)
Q Consensus 337 g~~dg~i~iwd~~~~~ 352 (394)
.+.|..||||...+.+
T Consensus 454 SGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 454 SGIDHDVKIWTPLTAE 469 (559)
T ss_pred cCCccceeeecCCccc
Confidence 9999999999764433
No 207
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.79 E-value=1.4e-17 Score=147.98 Aligned_cols=264 Identities=17% Similarity=0.227 Sum_probs=186.7
Q ss_pred ccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEE----c----CCCCEEEEEeCCCcEEE
Q 016187 62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAF----S----MDGQLLASGGLDGLVQI 133 (394)
Q Consensus 62 ~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~----s----~~g~~l~t~s~d~~i~v 133 (394)
.|+.-|.++.|..+..-+ ..+.|..+.+|.-.+.+....+.-..+.|....+ + .....|+.++.||.+.+
T Consensus 12 r~~e~vc~v~w~~~eei~--~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~i 89 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIY--FVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVI 89 (737)
T ss_pred ccceeEEeecccccceEE--EeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEE
Confidence 466777888888755433 3456777777764333322222222222211111 0 12247888999999999
Q ss_pred EeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCC
Q 016187 134 WDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDA 213 (394)
Q Consensus 134 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg 213 (394)
.+ ..++....+..|.+.+.+-.|+|+|.-|++++.||.|++|.-...- ...+.....+|.|++|.|+.+.++-+.. +
T Consensus 90 l~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGML-RStl~Q~~~~v~c~~W~p~S~~vl~c~g-~ 166 (737)
T KOG1524|consen 90 LN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGML-RSTVVQNEESIRCARWAPNSNSIVFCQG-G 166 (737)
T ss_pred ec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchH-HHHHhhcCceeEEEEECCCCCceEEecC-C
Confidence 86 5677777888899999999999999999999999999999865432 2233345678999999998776655433 4
Q ss_pred cEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeE
Q 016187 214 TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWA 293 (394)
Q Consensus 214 ~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l 293 (394)
.+.+=-+.-+..+..++. |.+-|.++.|++.+.++++|++|-..++||. .|+.+.+-..|.-+|++++|.|+ ..+
T Consensus 167 h~~IKpL~~n~k~i~WkA---HDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd-~~~ 241 (737)
T KOG1524|consen 167 HISIKPLAANSKIIRWRA---HDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPE-KDY 241 (737)
T ss_pred eEEEeecccccceeEEec---cCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccceeeeeeccc-cce
Confidence 454444444444444554 5677899999999999999999999999996 56677777789999999999999 555
Q ss_pred EEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 016187 294 ATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVW 346 (394)
Q Consensus 294 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iw 346 (394)
+.+|. +++++ .....+.|..++|++||..++.|+..|.+.+=
T Consensus 242 ~v~S~-nt~R~----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 242 LLWSY-NTARF----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred eeeee-eeeee----------cCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 55542 33442 11224568899999999999999999987653
No 208
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.78 E-value=7.1e-19 Score=153.67 Aligned_cols=266 Identities=17% Similarity=0.289 Sum_probs=204.8
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeec
Q 016187 109 SVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS 188 (394)
Q Consensus 109 ~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~ 188 (394)
.-+.+.++.+|++|+.|+.-|.|..+|..++++.+.+.- ...|..+.|..+..++++ .+...+++||-...+ +..+.
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AV-AQK~y~yvYD~~GtE-lHClk 207 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAV-AQKKYVYVYDNNGTE-LHCLK 207 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHh-hhhceEEEecCCCcE-Eeehh
Confidence 346789999999999999999999999999998877653 356888888887776655 567889999976443 44444
Q ss_pred ccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 016187 189 GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG 268 (394)
Q Consensus 189 ~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~ 268 (394)
.| ..|..+.|.|.--+|++++..|.++.-|+.+|+.+..+.. ..+.+..+.-+|-+..+-+|...|+|.+|.....
T Consensus 208 ~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t---~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk 283 (545)
T KOG1272|consen 208 RH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRT---GAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK 283 (545)
T ss_pred hc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHc---cCCccchhhcCCccceEEEcCCCceEEecCCCCc
Confidence 44 4678899999988999999999999999999987766543 2445777888999999999999999999999999
Q ss_pred cEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE-
Q 016187 269 KVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWD- 347 (394)
Q Consensus 269 ~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd- 347 (394)
.++..+..|.++|.++++.++|.|+||.+.|..++|||++............+...+++|..+ +++.+....|.||.
T Consensus 284 ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg--lLA~~~G~~v~iw~d 361 (545)
T KOG1272|consen 284 EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG--LLALSYGDHVQIWKD 361 (545)
T ss_pred chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc--ceeeecCCeeeeehh
Confidence 999999999999999999999999999999999999999876433222223456667776554 34455667899994
Q ss_pred CCC--CeEEEEeecc--cCceeEEEEccCCCEEEEEeCCC
Q 016187 348 SLS--GDCVRTFSGH--RDAIQAISVSAHQDFLVSVSLDG 383 (394)
Q Consensus 348 ~~~--~~~~~~~~~h--~~~v~~l~~~~~~~~l~s~s~dg 383 (394)
... +.+...+-.| .++|..|.|.|-...|-.|-.-|
T Consensus 362 ~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 362 ALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred hhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 222 2222223333 35889999998777665544433
No 209
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=9.6e-18 Score=149.51 Aligned_cols=238 Identities=22% Similarity=0.318 Sum_probs=168.0
Q ss_pred eEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEE-ecCCCCEEEEEEcCC--CCEEEEecCCCeEEEE
Q 016187 100 ASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL-EGPGGGVEWVSWHPR--GHIVLAGSEDSTVWMW 176 (394)
Q Consensus 100 ~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~l~~~s~d~~i~iw 176 (394)
...|.||++.|.|+.|+.+|.+|++||.|-.+.|||....++++.+ .+|.+.|.+++|-|. +.++++|+.|..|+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 3578999999999999999999999999999999999888877765 589999999999995 4589999999999999
Q ss_pred eCCc----------cceeeeecccCcCeEEEEECCCC-CeEEEEeCCCcEEEEcCCCCceEEE-------EcCCCCcccC
Q 016187 177 NADR----------AAYLNMFSGHGSSVTCGDFTPDG-KTICTGSDDATLRVWNPKSGENIHV-------IRGHPYHTEG 238 (394)
Q Consensus 177 ~~~~----------~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~-------~~~~~~~~~~ 238 (394)
|+.. ......+..|...|..++-.|++ +.+.+++.||+||-+|++....... +...-...-.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 9874 23345677899999999999988 7899999999999999986421110 0000001124
Q ss_pred eEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEecc---CC----CCEEEEE-ECCCCCeEEEEeCCCcEEEEeCCC
Q 016187 239 LTCLTISADS-TLALSGSKDGSVHMVNITTGKVVSSLVS---HT----DSIECIG-FSRSSPWAATGSMDQKLIIWDLQH 309 (394)
Q Consensus 239 i~~~~~~~~~-~~l~~g~~dg~i~i~d~~~~~~~~~~~~---h~----~~i~~v~-~~~~~~~l~s~s~dg~i~iwd~~~ 309 (394)
..|+.++|.. .+|++|+.|--.++||.+.. +..+.. +. .+..|+. |+|... ...+|.+.
T Consensus 203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~--lks~~s~~~~~~~pp~~~~cv~yf~p~hl----kn~~gn~~------ 270 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRV--LKSFRSDGTMNTCPPKDCRCVRYFSPGHL----KNSQGNLD------ 270 (758)
T ss_pred eeeeeecCCCCceEEecCCCchhhhhhhhhh--ccCCCCCccccCCCCcccchhheecCccc----cCcccccc------
Confidence 6789999964 68889999999999996432 111111 11 1111221 223211 01111100
Q ss_pred CCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 016187 310 SLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRT 356 (394)
Q Consensus 310 ~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~ 356 (394)
.....++-+.|+|+|.-|+..-..-.|+++|+..++....
T Consensus 271 -------~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 271 -------RYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred -------cceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 0111256678999998777665566899999987765543
No 210
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.75 E-value=2.7e-17 Score=134.11 Aligned_cols=245 Identities=18% Similarity=0.252 Sum_probs=166.7
Q ss_pred eeee-ccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCC-----CC----EEEEEeC
Q 016187 58 HIFS-GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD-----GQ----LLASGGL 127 (394)
Q Consensus 58 ~~~~-~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~-----g~----~l~t~s~ 127 (394)
..+. .|...|+.+.--|.+ -+.|-|.|.++.+|++.-+.++. .|.-.+.++.|.+. ++ .++.-+.
T Consensus 49 ~~~r~~g~~~it~lq~~p~d--~l~tqgRd~~L~lw~ia~s~~i~---i~Si~~nslgFCrfSl~~~~k~~eqll~yp~r 123 (323)
T KOG0322|consen 49 PLIRLFGRLFITNLQSIPND--SLDTQGRDPLLILWTIAYSAFIS---IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSR 123 (323)
T ss_pred hhhhhhccceeeceeecCCc--chhhcCCCceEEEEEccCcceEE---EeeeeccccccccceeccCCCcchhheecCCc
Confidence 3344 577888888888853 46788999999999997755433 24444555555432 11 1111110
Q ss_pred CC-cEEEEeCCCCceEEEEe----cCCCCEEEEEEcCC-CC--EEEEecCCCeEEEEeCCccc----------eeeeecc
Q 016187 128 DG-LVQIWDPSSGNLKCTLE----GPGGGVEWVSWHPR-GH--IVLAGSEDSTVWMWNADRAA----------YLNMFSG 189 (394)
Q Consensus 128 d~-~i~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~-~~--~l~~~s~d~~i~iw~~~~~~----------~~~~~~~ 189 (394)
.. .+.+-|......+.... ...+.+.+..+... +. ++++|.++|.+.+||+.++. .......
T Consensus 124 gsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~as 203 (323)
T KOG0322|consen 124 GSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNAS 203 (323)
T ss_pred ccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhh
Confidence 00 01111211111111111 12345666664332 32 56888899999999998862 2333456
Q ss_pred cCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCc-eEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 016187 190 HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG 268 (394)
Q Consensus 190 h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~ 268 (394)
|..+|.++.|.+.-..=++|+.+..+..|.+.... .+..-..+.....++..+.+-||++++++++.|+.|++|+.++.
T Consensus 204 h~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl 283 (323)
T KOG0322|consen 204 HKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL 283 (323)
T ss_pred ccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC
Confidence 89999999998866666888888899999875431 11110111112346778899999999999999999999999999
Q ss_pred cEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 016187 269 KVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDL 307 (394)
Q Consensus 269 ~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~ 307 (394)
+++..+..|.+.|++++|+|+..++|.++.|++|.+|++
T Consensus 284 ~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 284 NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999999999999999986
No 211
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.75 E-value=1e-15 Score=148.39 Aligned_cols=247 Identities=19% Similarity=0.266 Sum_probs=169.9
Q ss_pred eeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCC-----CeeeE--eecCcccCEEEEEEcCCCCEEEEEeCCCcEE
Q 016187 60 FSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-----GDWAS--EIQGHKDSVSSLAFSMDGQLLASGGLDGLVQ 132 (394)
Q Consensus 60 ~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~-----~~~~~--~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~ 132 (394)
+-.|...|..++.++.++.+|+|||.||+|++|+... +.... ++.-....+.++...+.|..+|.++.||.|+
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~ 1123 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVR 1123 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEE
Confidence 4468889999999887778999999999999999753 22222 2332356789999999999999999999999
Q ss_pred EEeCCCCce--E-E----E--EecCCCCEEEEEEcC--CCCEEEEecCCCeEEEEeCCccceeeee--cccCcCeEEEEE
Q 016187 133 IWDPSSGNL--K-C----T--LEGPGGGVEWVSWHP--RGHIVLAGSEDSTVWMWNADRAAYLNMF--SGHGSSVTCGDF 199 (394)
Q Consensus 133 vwd~~~~~~--~-~----~--~~~~~~~v~~~~~~~--~~~~l~~~s~d~~i~iw~~~~~~~~~~~--~~h~~~v~~~~~ 199 (394)
+.++...+. . . . .......|..-+|.. ....++.+..-+.|..||++.......+ ....+.|++++.
T Consensus 1124 ~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~i 1203 (1431)
T KOG1240|consen 1124 VLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVI 1203 (1431)
T ss_pred EEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEe
Confidence 998765221 1 1 1 111222222233332 2347788888899999998765433222 233567999999
Q ss_pred CCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCC---CCEEEEE-e-CCCcEEEEECCCCcEEEEe
Q 016187 200 TPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD---STLALSG-S-KDGSVHMVNITTGKVVSSL 274 (394)
Q Consensus 200 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~g-~-~dg~i~i~d~~~~~~~~~~ 274 (394)
+|.+.+++.|+..|.+.+||++=+..+..+. ++. ..+++.+..+|- ....+++ + ..+-|.+|++.+|.....+
T Consensus 1204 dp~~~WlviGts~G~l~lWDLRF~~~i~sw~-~P~-~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl 1281 (1431)
T KOG1240|consen 1204 DPWCNWLVIGTSRGQLVLWDLRFRVPILSWE-HPA-RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVL 1281 (1431)
T ss_pred cCCceEEEEecCCceEEEEEeecCceeeccc-Ccc-cCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEE
Confidence 9999999999999999999998776665544 232 355666666653 2344444 4 5778999999988655544
Q ss_pred ccC--------CCC-----------EEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 016187 275 VSH--------TDS-----------IECIGFSRSSPWAATGSMDQKLIIWDLQ 308 (394)
Q Consensus 275 ~~h--------~~~-----------i~~v~~~~~~~~l~s~s~dg~i~iwd~~ 308 (394)
... ..+ ....++..-+.++.+|+.|..|+.||..
T Consensus 1282 ~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1282 WASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred EcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCC
Confidence 322 111 1122334446789999999999999964
No 212
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.75 E-value=1.3e-14 Score=132.06 Aligned_cols=298 Identities=15% Similarity=0.139 Sum_probs=188.2
Q ss_pred eeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEe-CCCcEEEEe
Q 016187 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG-LDGLVQIWD 135 (394)
Q Consensus 57 ~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s-~d~~i~vwd 135 (394)
...+......-..+.++|++ +++...+.|+.+.++|+.+.+.+.+++.-. ...++++|+||++++++. ..+.+.++|
T Consensus 29 ~~~i~~~~~~h~~~~~s~Dg-r~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D 106 (369)
T PF02239_consen 29 VARIPTGGAPHAGLKFSPDG-RYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVID 106 (369)
T ss_dssp EEEEE-STTEEEEEE-TT-S-SEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEE
T ss_pred EEEEcCCCCceeEEEecCCC-CEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEec
Confidence 34444333333346788864 455556789999999999999998887544 457899999999988775 689999999
Q ss_pred CCCCceEEEEec-------CCCCEEEEEEcCCCCEEEEec-CCCeEEEEeCCccceee-eecccCcCeEEEEECCCCCeE
Q 016187 136 PSSGNLKCTLEG-------PGGGVEWVSWHPRGHIVLAGS-EDSTVWMWNADRAAYLN-MFSGHGSSVTCGDFTPDGKTI 206 (394)
Q Consensus 136 ~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~s-~d~~i~iw~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l 206 (394)
..+.+.+..+.. ....+..+..+|....++..- ..+.|.+.|....+.+. .............|+|+++++
T Consensus 107 ~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~ 186 (369)
T PF02239_consen 107 AETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYF 186 (369)
T ss_dssp TTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEE
T ss_pred cccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCccccee
Confidence 999988877653 234567777788888555544 45888888876544332 222234456678999999987
Q ss_pred EEE-eCCCcEEEEcCCCCceEEEEcC-CCCcccCeEEEEEcCC----------CCEEEEEeCCCcEEEEECCCCcEEEEe
Q 016187 207 CTG-SDDATLRVWNPKSGENIHVIRG-HPYHTEGLTCLTISAD----------STLALSGSKDGSVHMVNITTGKVVSSL 274 (394)
Q Consensus 207 ~s~-~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~i~~~~~~~~----------~~~l~~g~~dg~i~i~d~~~~~~~~~~ 274 (394)
+.+ ..+..|-++|.++++....+.. ...|..+...+ .+|. +...++.-....+.+|+..+.+.+.++
T Consensus 187 ~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I 265 (369)
T PF02239_consen 187 LVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTI 265 (369)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEE
T ss_pred eecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEE
Confidence 654 5567899999998877665532 22222233222 1222 222222223345567888899999998
Q ss_pred ccCCCCEEEEEECCCCCeEEEE----eCCCcEEEEeCCCCCcceeccC--CCCEEEEEEeCCCCEEEEEeC--CCeEEEE
Q 016187 275 VSHTDSIECIGFSRSSPWAATG----SMDQKLIIWDLQHSLPRSTCDH--EDGVTCLMWLGTSKYVVTGCV--DGKVRVW 346 (394)
Q Consensus 275 ~~h~~~i~~v~~~~~~~~l~s~----s~dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~sg~~--dg~i~iw 346 (394)
.....+ ..+..+|+++++... ...++|.++|.++......+.. ...+..+.|+++|+++..... +|.|.+|
T Consensus 266 ~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~ 344 (369)
T PF02239_consen 266 PTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVY 344 (369)
T ss_dssp E-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEE
T ss_pred ECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEE
Confidence 876666 778889999999887 4558999999987644433322 234889999999997766544 4469999
Q ss_pred ECCCCeEEEEee
Q 016187 347 DSLSGDCVRTFS 358 (394)
Q Consensus 347 d~~~~~~~~~~~ 358 (394)
|..|.+.++++.
T Consensus 345 D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 345 DAKTLKEKKRIP 356 (369)
T ss_dssp ETTTTEEEEEEE
T ss_pred ECCCcEEEEEEE
Confidence 999999999887
No 213
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1e-15 Score=137.38 Aligned_cols=281 Identities=15% Similarity=0.192 Sum_probs=209.4
Q ss_pred ccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcc--cCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 016187 62 GHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHK--DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG 139 (394)
Q Consensus 62 ~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~--~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~ 139 (394)
+|...-+.|..+|++.+++|||-.--.|++||+.+..+ .+.-|. +.|.-.-++-|-..++---.|.+|-+.... |
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL--KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~-G 125 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL--KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY-G 125 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEccccee--eeeecccccceeEEEeccchhhheEeecCceeeehhhc-C
Confidence 46777889999999888999999999999999876543 344454 456666667676666666778887775422 2
Q ss_pred ceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEc
Q 016187 140 NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219 (394)
Q Consensus 140 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 219 (394)
. ...+.-+ ..-..++++.-..-|+.++....|+-++++.+..+..+....+.++++..++-..+|++|+.+|.|..||
T Consensus 126 ~-hy~~RIP-~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 126 R-HYRTRIP-KFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD 203 (703)
T ss_pred e-eeeeecC-cCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEec
Confidence 2 1122211 1223456664444455666667899999999999998888889999999999999999999999999999
Q ss_pred CCCCceEEEEcCCC---Ccc-----cCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEe-ccCCCCEEEEEECCCC
Q 016187 220 PKSGENIHVIRGHP---YHT-----EGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL-VSHTDSIECIGFSRSS 290 (394)
Q Consensus 220 ~~~~~~~~~~~~~~---~~~-----~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~-~~h~~~i~~v~~~~~~ 290 (394)
+++...+..+.... .+. ..|+++.|+.+|-.+++|..+|.+.|+|+++.+++..- ....-+|..+.|.+..
T Consensus 204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~ 283 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTD 283 (703)
T ss_pred chhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccC
Confidence 99877665554221 122 24899999999999999999999999999998876432 2345678889997763
Q ss_pred --CeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 016187 291 --PWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDS 348 (394)
Q Consensus 291 --~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~ 348 (394)
..++|. ....++|||-.++.+.........++-+++.|++.++++|-.++.+..|=+
T Consensus 284 ~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyi 342 (703)
T KOG2321|consen 284 QQNKVVSM-DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYI 342 (703)
T ss_pred CCceEEec-chHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeEEc
Confidence 344443 345689999888777776667777889999999999999998888776643
No 214
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=7.1e-15 Score=125.18 Aligned_cols=298 Identities=17% Similarity=0.242 Sum_probs=187.9
Q ss_pred CcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecC-cccCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCC---
Q 016187 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG-HKDSVSSLAFSMDG-QLLASGGLDGLVQIWDPSSG--- 139 (394)
Q Consensus 65 ~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~-h~~~V~~v~~s~~g-~~l~t~s~d~~i~vwd~~~~--- 139 (394)
-.+..++||+ .-.-+|.+..|.+|++|+-.. +....++. -...|+|++|-|.+ ..|+.|... -|.+|.....
T Consensus 99 ~dlr~~aWhq-H~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~ 175 (445)
T KOG2139|consen 99 IDLRGVAWHQ-HIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNA 175 (445)
T ss_pred cceeeEeech-hhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccc
Confidence 4678899998 455688999999999999766 44445543 34679999999976 456666654 5999975421
Q ss_pred -ce----------EEEEecCCCCEEEEEEcCCCCEEEEecC-CCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEE
Q 016187 140 -NL----------KCTLEGPGGGVEWVSWHPRGHIVLAGSE-DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC 207 (394)
Q Consensus 140 -~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~s~-d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 207 (394)
+. +...++| -+|++++|++++..+++++- |..|.+||..++..+.......+.++-+.|+|||.+|+
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF 254 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence 11 1111233 58999999999999998884 67999999998877666544556778899999999999
Q ss_pred EEeCCCcEEEEcCCCC-ceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEE
Q 016187 208 TGSDDATLRVWNPKSG-ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGF 286 (394)
Q Consensus 208 s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~ 286 (394)
.+.-|+..++|+.... .+..-. .....+...+|+|+|++++..... .-+++. +.|
T Consensus 255 aAt~davfrlw~e~q~wt~erw~----lgsgrvqtacWspcGsfLLf~~sg-sp~lys-------------------l~f 310 (445)
T KOG2139|consen 255 AATCDAVFRLWQENQSWTKERWI----LGSGRVQTACWSPCGSFLLFACSG-SPRLYS-------------------LTF 310 (445)
T ss_pred Eecccceeeeehhcccceeccee----ccCCceeeeeecCCCCEEEEEEcC-CceEEE-------------------Eee
Confidence 9999999999964322 111111 123478889999999987655432 222222 223
Q ss_pred CCCCCeEE-EEeCCCcEEEEeCCCCCc-ceeccCCCCEEEEEEeCCCCEEEEEeCCCe--------EEEEECCCCeEEEE
Q 016187 287 SRSSPWAA-TGSMDQKLIIWDLQHSLP-RSTCDHEDGVTCLMWLGTSKYVVTGCVDGK--------VRVWDSLSGDCVRT 356 (394)
Q Consensus 287 ~~~~~~l~-s~s~dg~i~iwd~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~--------i~iwd~~~~~~~~~ 356 (394)
+.....+. .++.-..+.+-|+..... .......++..+++|.|.|.|||+--..+. |.+||.+..-.+.-
T Consensus 311 ~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vel 390 (445)
T KOG2139|consen 311 DGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVEL 390 (445)
T ss_pred cCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEE
Confidence 22211111 222222233344432100 001112356789999999999998765443 67787654433322
Q ss_pred e-ecc--cCceeEEEEcc---CCCEEEEEeCCCcEEEEec
Q 016187 357 F-SGH--RDAIQAISVSA---HQDFLVSVSLDGTARVFEI 390 (394)
Q Consensus 357 ~-~~h--~~~v~~l~~~~---~~~~l~s~s~dg~i~iw~~ 390 (394)
. -|- ...-.-+.|+| ++.+|..+=.-|.+.-|.+
T Consensus 391 s~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 391 SYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred EecccccCCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 1 111 11123455654 4556666666788877765
No 215
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=7e-16 Score=132.48 Aligned_cols=260 Identities=16% Similarity=0.225 Sum_probs=187.4
Q ss_pred CcEEEEEEcCCCC-cEEEEecCCCeEEEEEcCCCeeeEee------cCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 016187 65 DEVYSVACSPTDA-TLVATGGGDDKGFFWRINQGDWASEI------QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS 137 (394)
Q Consensus 65 ~~v~~~~~~p~~~-~~lasg~~d~~v~~w~~~~~~~~~~~------~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~ 137 (394)
+.|..++|..++. ..+...+.|..+....++...+...+ ..-+++|..++... ..|++|-.+|.+.+|...
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d--g~Litc~~sG~l~~~~~k 133 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD--GTLITCVSSGNLQVRHDK 133 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcC--CEEEEEecCCcEEEEecc
Confidence 4556666654332 24444446666666666655544432 34466777776542 367788899999999987
Q ss_pred CCce----EEEEecCCCCEEEEEEcCCCC-EEEEecCC--CeEEEEeCCccceeeeec-------cc--CcCeEEEEECC
Q 016187 138 SGNL----KCTLEGPGGGVEWVSWHPRGH-IVLAGSED--STVWMWNADRAAYLNMFS-------GH--GSSVTCGDFTP 201 (394)
Q Consensus 138 ~~~~----~~~~~~~~~~v~~~~~~~~~~-~l~~~s~d--~~i~iw~~~~~~~~~~~~-------~h--~~~v~~~~~~~ 201 (394)
.+.. +..+. ...++..+.-++... ++++|+.. ..+.+||+++.+.+..-+ +- .-.++.+.|.+
T Consensus 134 ~~d~hss~l~~la-~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~ 212 (412)
T KOG3881|consen 134 SGDLHSSKLIKLA-TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLE 212 (412)
T ss_pred CCccccccceeee-cCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecC
Confidence 5542 22222 224566666677655 45668888 899999998774332211 11 12356788988
Q ss_pred C--CCeEEEEeCCCcEEEEcCCCCce-EEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE-eccC
Q 016187 202 D--GKTICTGSDDATLRVWNPKSGEN-IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSS-LVSH 277 (394)
Q Consensus 202 ~--~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~-~~~h 277 (394)
. ...||+++.-+.||+||++.++. +..+ .+...+++++...|.++++++|..-|.+..||+++++.+.. +.+-
T Consensus 213 g~~~~~fat~T~~hqvR~YDt~~qRRPV~~f---d~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~ 289 (412)
T KOG3881|consen 213 GSPNYKFATITRYHQVRLYDTRHQRRPVAQF---DFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI 289 (412)
T ss_pred CCCCceEEEEecceeEEEecCcccCcceeEe---ccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc
Confidence 7 78999999999999999987653 2233 34567899999999999999999999999999999998877 8888
Q ss_pred CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCC
Q 016187 278 TDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGT 330 (394)
Q Consensus 278 ~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~ 330 (394)
++.|.++..+|..+++|+++.|..++|+|+++......+.-...++++.+.++
T Consensus 290 tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 290 TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred cCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 99999999999999999999999999999998655554444555677766544
No 216
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.74 E-value=2.7e-15 Score=126.23 Aligned_cols=274 Identities=19% Similarity=0.321 Sum_probs=194.7
Q ss_pred CcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceEE
Q 016187 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKC 143 (394)
Q Consensus 65 ~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~-~l~t~s~d~~i~vwd~~~~~~~~ 143 (394)
+.|..|.|.-+.-..|.....|+.|++|++...++-..+..-.+++.+++|||||+ .|.+...+-.|.||.+.+.+...
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~ 128 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL 128 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence 56777888875556778888999999999999999999998899999999999996 55677789999999998766542
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEecC------------------------------------CCeEEEEeCCccceeeee
Q 016187 144 TLEGPGGGVEWVSWHPRGHIVLAGSE------------------------------------DSTVWMWNADRAAYLNMF 187 (394)
Q Consensus 144 ~~~~~~~~v~~~~~~~~~~~l~~~s~------------------------------------d~~i~iw~~~~~~~~~~~ 187 (394)
++.+...+..++|+|+|++.+.++. +..+.+||.--.- +.+
T Consensus 129 -~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Ley--kv~ 205 (447)
T KOG4497|consen 129 -LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEY--KVY 205 (447)
T ss_pred -ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhh--eee
Confidence 3445556778889998887654432 1123334321111 111
Q ss_pred ccc-CcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceE----------------------------------------
Q 016187 188 SGH-GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENI---------------------------------------- 226 (394)
Q Consensus 188 ~~h-~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~---------------------------------------- 226 (394)
..| +-.+..++|+|.+++|+.|+.|+.+|+-+-.+-+..
T Consensus 206 aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~ 285 (447)
T KOG4497|consen 206 AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLE 285 (447)
T ss_pred eeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccc
Confidence 223 246778899999999999999999998653221100
Q ss_pred --------------------EEEc---CCCCcccCeEEEEEcCCCCEEEEEeCC--CcEEEEECCCCcEEEEeccCCCCE
Q 016187 227 --------------------HVIR---GHPYHTEGLTCLTISADSTLALSGSKD--GSVHMVNITTGKVVSSLVSHTDSI 281 (394)
Q Consensus 227 --------------------~~~~---~~~~~~~~i~~~~~~~~~~~l~~g~~d--g~i~i~d~~~~~~~~~~~~h~~~i 281 (394)
+.++ ..+....++.-++|++|..++++-... ..+.+||++..++.. ......+|
T Consensus 286 a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~a-vLiQk~pi 364 (447)
T KOG4497|consen 286 AHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHA-VLIQKHPI 364 (447)
T ss_pred cCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhh-hhhhccce
Confidence 0000 000112245668999999998886543 578999998776433 33356799
Q ss_pred EEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCe
Q 016187 282 ECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGK 342 (394)
Q Consensus 282 ~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~ 342 (394)
.+..|+|..+.|+.+....++.+|..........-.....|..+.|..+|..++..+.|.-
T Consensus 365 raf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 365 RAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred eEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCce
Confidence 9999999999999988888899998876443333344466889999999998888777753
No 217
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.73 E-value=8.9e-16 Score=126.98 Aligned_cols=236 Identities=17% Similarity=0.246 Sum_probs=172.8
Q ss_pred ccCCcEEEEEEcCCC----CcEEEEecCCCeEEEEEcCCCeee----Eee-----cCcccCEEEEEEcC-CCCEEEEEeC
Q 016187 62 GHSDEVYSVACSPTD----ATLVATGGGDDKGFFWRINQGDWA----SEI-----QGHKDSVSSLAFSM-DGQLLASGGL 127 (394)
Q Consensus 62 ~h~~~v~~~~~~p~~----~~~lasg~~d~~v~~w~~~~~~~~----~~~-----~~h~~~V~~v~~s~-~g~~l~t~s~ 127 (394)
.|.-+++.+.|.|+. ..+|||.| ..+|+|.+...+.. ..| ..+..++++..|+. +-+++.++|-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 577789999999953 46888754 68999998743211 112 23567899999986 5578999999
Q ss_pred CCcEEEEeCCCCc---eEEEEecCCCCEEEEEEcCCC-CEEEEecCCCeEEEEeCCccceeeee---cccCcCeEEEEEC
Q 016187 128 DGLVQIWDPSSGN---LKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWNADRAAYLNMF---SGHGSSVTCGDFT 200 (394)
Q Consensus 128 d~~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~d~~i~iw~~~~~~~~~~~---~~h~~~v~~~~~~ 200 (394)
|-+..|||+.++. +...+-.|...|..++|...+ ..+++.+.||.+|++|++.......+ .....+...++|+
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswn 251 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWN 251 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccC
Confidence 9999999999873 356678899999999999865 48899999999999999876543322 1224567788888
Q ss_pred C-CCCeEEEEeCCC-cEEEEcCCCCc-eEEEEcCCCCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCcE------
Q 016187 201 P-DGKTICTGSDDA-TLRVWNPKSGE-NIHVIRGHPYHTEGLTCLTISAD-STLALSGSKDGSVHMVNITTGKV------ 270 (394)
Q Consensus 201 ~-~~~~l~s~~~dg-~i~vwd~~~~~-~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~g~~dg~i~i~d~~~~~~------ 270 (394)
+ |-+++|+-..|. .|.+-|++... .+..+++ |...|+.++|.|. ...+.+++.|....+||+.+.-.
T Consensus 252 kqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~---H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dP 328 (364)
T KOG0290|consen 252 KQDPNYMATFAMDSNKVVILDIRVPCTPVARLRN---HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDP 328 (364)
T ss_pred cCCchHHhhhhcCCceEEEEEecCCCcceehhhc---CcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCc
Confidence 7 556788766654 58999998754 3444554 5678999999996 46889999999999999976421
Q ss_pred EEEeccCCCCEEEEEECCC-CCeEEEEeCCCcEEE
Q 016187 271 VSSLVSHTDSIECIGFSRS-SPWAATGSMDQKLII 304 (394)
Q Consensus 271 ~~~~~~h~~~i~~v~~~~~-~~~l~s~s~dg~i~i 304 (394)
+.... -...|+.++|++. +.+++.+. ++++.|
T Consensus 329 ilay~-a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 329 ILAYT-AGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred hhhhh-ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 11122 3567999999965 55777664 334433
No 218
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=1.1e-14 Score=136.29 Aligned_cols=234 Identities=15% Similarity=0.093 Sum_probs=158.1
Q ss_pred CeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEe---CCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCE
Q 016187 87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG---LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHI 163 (394)
Q Consensus 87 ~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 163 (394)
..+++||....+. ..+..+...+.+.+|||||+.|+..+ .+..|.+|++.+++.... ....+.+...+|+|+|+.
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSK 256 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCE
Confidence 3688888765543 34445677899999999999988654 245799999988865432 222233456899999997
Q ss_pred EEEe-cCCC--eEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCC-CcEEEE--cCCCCceEEEEcCCCCccc
Q 016187 164 VLAG-SEDS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD-ATLRVW--NPKSGENIHVIRGHPYHTE 237 (394)
Q Consensus 164 l~~~-s~d~--~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-g~i~vw--d~~~~~~~~~~~~~~~~~~ 237 (394)
|+.. +.++ .|++||+.+++..+.. .+...+....|+|+|+.|+..+.+ +..++| |+.+++.. .+.. ...
T Consensus 257 La~~~~~~g~~~I~~~d~~tg~~~~lt-~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~---~~~ 331 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW---EGS 331 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCCCEEEcc-CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec---CCC
Confidence 7654 4444 5889999887654443 334456788999999988776654 444454 66655432 2321 122
Q ss_pred CeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCc---EEEEeCCCCC
Q 016187 238 GLTCLTISADSTLALSGSKD---GSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQK---LIIWDLQHSL 311 (394)
Q Consensus 238 ~i~~~~~~~~~~~l~~g~~d---g~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~---i~iwd~~~~~ 311 (394)
......|+|+|+.++..+.+ ..|.+||+.+++.. .+.. ........|+|++.+++.++.++. +.++++....
T Consensus 332 ~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~ 409 (429)
T PRK03629 332 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF 409 (429)
T ss_pred CccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC
Confidence 34567899999988776543 35888999887643 3332 122346789999999999887764 6677776555
Q ss_pred cceeccCCCCEEEEEEeC
Q 016187 312 PRSTCDHEDGVTCLMWLG 329 (394)
Q Consensus 312 ~~~~~~~~~~v~~~~~~~ 329 (394)
......|...+...+|+|
T Consensus 410 ~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 410 KARLPATDGQVKFPAWSP 427 (429)
T ss_pred eEECccCCCCcCCcccCC
Confidence 555555666777788876
No 219
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=3.5e-15 Score=134.07 Aligned_cols=278 Identities=17% Similarity=0.243 Sum_probs=193.2
Q ss_pred CcccCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceEEEEecC--CCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcc
Q 016187 105 GHKDSVSSLAFSMDGQLL-ASGGLDGLVQIWDPSSGNLKCTLEGP--GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA 181 (394)
Q Consensus 105 ~h~~~V~~v~~s~~g~~l-~t~s~d~~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~ 181 (394)
+|...-+.|..+|||+|+ |||.+--.|++||+.+-.+. +..| ...|...-++.+-..++.--.|.+|.+-.-...
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~ 126 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR 126 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEeccchhhheEeecCceeeehhhcCe
Confidence 477888999999999985 67888899999998765433 3322 233444444444333333344555544322111
Q ss_pred ceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEE
Q 016187 182 AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVH 261 (394)
Q Consensus 182 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~ 261 (394)
-.-..++ ..-..+.++.-.--|+.++....|.-.++..|+-+..+.. ....++++.+++...++++|+.+|.+.
T Consensus 127 hy~~RIP---~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~---~~~~lN~v~in~~hgLla~Gt~~g~VE 200 (703)
T KOG2321|consen 127 HYRTRIP---KFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET---DSGELNVVSINEEHGLLACGTEDGVVE 200 (703)
T ss_pred eeeeecC---cCCccccccCCCccEEEeecCcceEEEEcccccccccccc---ccccceeeeecCccceEEecccCceEE
Confidence 1000011 1112334443222345555556688888888876655543 346799999999999999999999999
Q ss_pred EEECCCCcEEEEecc------CCC-----CEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCC--CEEEEEEe
Q 016187 262 MVNITTGKVVSSLVS------HTD-----SIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHED--GVTCLMWL 328 (394)
Q Consensus 262 i~d~~~~~~~~~~~~------h~~-----~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~v~~~~~~ 328 (394)
+||.+....+.++.. |.+ .|+++.|+.+|-.+++|...|.+.|||++...+.....|.. +|..+.|.
T Consensus 201 fwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~ 280 (703)
T KOG2321|consen 201 FWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQ 280 (703)
T ss_pred EecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccc
Confidence 999988766555432 333 49999999999999999999999999999887776666654 57788887
Q ss_pred CC--CCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 329 GT--SKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 329 ~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
+. .+.|++ .....++|||-.+|+....+..- ..++.+++-|+.-+++++-.+..+..|=+..
T Consensus 281 ~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEpt-~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 281 DTDQQNKVVS-MDKRILKIWDECTGKPMASIEPT-SDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred ccCCCceEEe-cchHHhhhcccccCCceeecccc-CCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 65 334444 34567999999999998888753 3499999999999999999988887776553
No 220
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=1.2e-14 Score=136.08 Aligned_cols=232 Identities=17% Similarity=0.119 Sum_probs=159.5
Q ss_pred CcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEec---CCCeEEEEeCCccceee--eecccCcCeEEEEECCCC
Q 016187 129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS---EDSTVWMWNADRAAYLN--MFSGHGSSVTCGDFTPDG 203 (394)
Q Consensus 129 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s---~d~~i~iw~~~~~~~~~--~~~~h~~~v~~~~~~~~~ 203 (394)
..|.+||...+... .+..+...+...+|+|+|+.|+..+ .+..+++|++.+++... .+.++ +...+|+|||
T Consensus 179 ~~l~~~d~dg~~~~-~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~---~~~~~~SPDG 254 (429)
T PRK03629 179 YELRVSDYDGYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH---NGAPAFSPDG 254 (429)
T ss_pred eeEEEEcCCCCCCE-EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCC---cCCeEECCCC
Confidence 36888988755443 3444566789999999999887654 34579999998775432 23333 3457899999
Q ss_pred CeEEEE-eCCC--cEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCC-Cc--EEEEECCCCcEEEEeccC
Q 016187 204 KTICTG-SDDA--TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-GS--VHMVNITTGKVVSSLVSH 277 (394)
Q Consensus 204 ~~l~s~-~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~d-g~--i~i~d~~~~~~~~~~~~h 277 (394)
+.|+.. +.+| .|.+||+.+++...... ....+....|+|+|+.++..+.+ +. |.++|+.+++. ..+..+
T Consensus 255 ~~La~~~~~~g~~~I~~~d~~tg~~~~lt~----~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~ 329 (429)
T PRK03629 255 SKLAFALSKTGSLNLYVMDLASGQIRQVTD----GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWE 329 (429)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCEEEccC----CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecC
Confidence 988754 4455 48889998876543322 12346678999999988766653 44 55557766653 334334
Q ss_pred CCCEEEEEECCCCCeEEEEeCC---CcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCe---EEEEECCCC
Q 016187 278 TDSIECIGFSRSSPWAATGSMD---QKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGK---VRVWDSLSG 351 (394)
Q Consensus 278 ~~~i~~v~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~---i~iwd~~~~ 351 (394)
........|+|++.+++..+.+ ..|.+||+.+........ ........|+|++++|+.++.++. ++++++ +|
T Consensus 330 ~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G 407 (429)
T PRK03629 330 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DG 407 (429)
T ss_pred CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CC
Confidence 4455678899999998876543 357889987664433221 122345679999999999887764 677776 57
Q ss_pred eEEEEeecccCceeEEEEcc
Q 016187 352 DCVRTFSGHRDAIQAISVSA 371 (394)
Q Consensus 352 ~~~~~~~~h~~~v~~l~~~~ 371 (394)
+..+.+.+|.+.+...+|+|
T Consensus 408 ~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 408 RFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred CCeEECccCCCCcCCcccCC
Confidence 77778888888898899987
No 221
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.71 E-value=1.2e-15 Score=136.09 Aligned_cols=242 Identities=20% Similarity=0.247 Sum_probs=159.1
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEE------EEecCCCCEEEEEE-----cCCCCEEEEecCCCeEEEEe
Q 016187 109 SVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC------TLEGPGGGVEWVSW-----HPRGHIVLAGSEDSTVWMWN 177 (394)
Q Consensus 109 ~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~------~~~~~~~~v~~~~~-----~~~~~~l~~~s~d~~i~iw~ 177 (394)
.++...++-.|.+|+-. ....+.+|+...+..++ .+.+. ...+-.| .|.+.-++.|-.-|.+.+.+
T Consensus 125 ~~~~~~~~~~gd~lcFn-vg~~lyv~~~~g~~~~~~pi~k~~y~gt--~P~cHdfn~~~a~~~g~dllIGf~tGqvq~id 201 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFN-VGRELYVYSYRGAADLSKPIDKREYKGT--SPTCHDFNSFTATPKGLDLLIGFTTGQVQLID 201 (636)
T ss_pred ceeeccccCCCCEEEEe-cCCeEEEEEccCcchhccchhhhcccCC--CCceecccccccCCCCcceEEeeccCceEEec
Confidence 34555556667666433 23468888876442221 12222 2223333 34556788888889999988
Q ss_pred CCccceeeeecc----cCcCeEEEEECCC-CCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEE
Q 016187 178 ADRAAYLNMFSG----HGSSVTCGDFTPD-GKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL 252 (394)
Q Consensus 178 ~~~~~~~~~~~~----h~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 252 (394)
....+..+.+.. ....|+|+.|.|. ...++.+..+|.+.+||..-. .+. .. .+-...+++..+.
T Consensus 202 p~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~------~~~----t~-p~~~~~k~~~~f~ 270 (636)
T KOG2394|consen 202 PINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV------CGA----TA-PSYQALKDGDQFA 270 (636)
T ss_pred chhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc------ccC----CC-CcccccCCCCeeE
Confidence 765443332221 2478999999994 456677788999999986211 000 00 0111223343333
Q ss_pred EEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceec-cCCCCEEEEEEeCCC
Q 016187 253 SGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTC-DHEDGVTCLMWLGTS 331 (394)
Q Consensus 253 ~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~ 331 (394)
....-+ ..+..++....--...|+..+|+||+++||+.+.||.++|||..+....... ..-.+..|++|+||+
T Consensus 271 i~t~ks------k~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDG 344 (636)
T KOG2394|consen 271 ILTSKS------KKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDG 344 (636)
T ss_pred Eeeeec------cccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCc
Confidence 221111 1111334444334568999999999999999999999999998764333221 234578999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEc
Q 016187 332 KYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVS 370 (394)
Q Consensus 332 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~ 370 (394)
+||++|+.|..|.||....++.+.+=.||+..|..|+|.
T Consensus 345 KyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 345 KYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred cEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 999999999999999999999999999999999999997
No 222
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.71 E-value=9.6e-16 Score=128.43 Aligned_cols=202 Identities=17% Similarity=0.215 Sum_probs=163.3
Q ss_pred cCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-
Q 016187 190 HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG- 268 (394)
Q Consensus 190 h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~- 268 (394)
-..+|+|-+|++|+..+|.+-....|.||.....+..........|...++.+.|+|..+.+++++.|..-++|....+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 3568999999999999999999999999998776633333333346778999999999999999999999999998443
Q ss_pred --cEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcce-----eccCCCCEEEEEEeCCCCEEEEEeCCC
Q 016187 269 --KVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRS-----TCDHEDGVTCLMWLGTSKYVVTGCVDG 341 (394)
Q Consensus 269 --~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~sg~~dg 341 (394)
++.-.+..+....++|.|+|....+|+||....|.+|-......-. ...+...|+++.|+|++-+|++|+.|+
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~ 168 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG 168 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc
Confidence 3344456688899999999999999999999999999876543221 223456789999999999999999999
Q ss_pred eEEEEECC------------------CCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 342 KVRVWDSL------------------SGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 342 ~i~iwd~~------------------~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
+.++|..- -|++..++....+.|..+.|+|.|..|+-.+.|.++.+=|-.
T Consensus 169 k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~ 236 (361)
T KOG1523|consen 169 KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAA 236 (361)
T ss_pred ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecC
Confidence 99999641 133444555567789999999999999999999999886643
No 223
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.71 E-value=7.1e-14 Score=117.30 Aligned_cols=274 Identities=18% Similarity=0.299 Sum_probs=179.7
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEE-EEecCC------CeEEEEeCCccc
Q 016187 110 VSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIV-LAGSED------STVWMWNADRAA 182 (394)
Q Consensus 110 V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~d------~~i~iw~~~~~~ 182 (394)
..+++|+.|..-++.|..+| .+||+.+.-+.....+...+.+.-+..--..++| +.|+.+ +.+.|||-...+
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~ 86 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKER 86 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCc
Confidence 44599999998888887666 8999987643322222222222222222223444 444443 579999976666
Q ss_pred eeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCC-CCceEEEEcCCCCcccCeEEEEEcCCCCEEEE-EeCCCcE
Q 016187 183 YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPK-SGENIHVIRGHPYHTEGLTCLTISADSTLALS-GSKDGSV 260 (394)
Q Consensus 183 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-g~~dg~i 260 (394)
++..+. ...+|.++.+.++ .++.. ....|.||... ..+.++.+.... ...++.+++-..+..+|+. |-.-|.|
T Consensus 87 ~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~-NPkGlC~~~~~~~k~~LafPg~k~Gqv 161 (346)
T KOG2111|consen 87 CIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRS-NPKGLCSLCPTSNKSLLAFPGFKTGQV 161 (346)
T ss_pred EEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeeccc-CCCceEeecCCCCceEEEcCCCccceE
Confidence 666553 4678999988865 34443 35789999987 345555554322 2234444443333334433 5566999
Q ss_pred EEEECCCCcE--EEEeccCCCCEEEEEECCCCCeEEEEeCCCc-EEEEeCCCCCcceec---cCCCCEEEEEEeCCCCEE
Q 016187 261 HMVNITTGKV--VSSLVSHTDSIECIGFSRSSPWAATGSMDQK-LIIWDLQHSLPRSTC---DHEDGVTCLMWLGTSKYV 334 (394)
Q Consensus 261 ~i~d~~~~~~--~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~l 334 (394)
+|.|+...+. ...+.+|...|.|++++.+|..+||+|..|+ |+|||..++...... .....+.|++|+|+..+|
T Consensus 162 Qi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~L 241 (346)
T KOG2111|consen 162 QIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWL 241 (346)
T ss_pred EEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEE
Confidence 9999987654 3667899999999999999999999999998 689999876544332 234569999999999999
Q ss_pred EEEeCCCeEEEEECCCCe---E-----------E-E---------EeecccCceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 335 VTGCVDGKVRVWDSLSGD---C-----------V-R---------TFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 335 ~sg~~dg~i~iwd~~~~~---~-----------~-~---------~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
+++|..|+|.||.++... . + + .+.--.+..--++|..+.+.++..+.||+-+-+.
T Consensus 242 avsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~ 320 (346)
T KOG2111|consen 242 AVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFK 320 (346)
T ss_pred EEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEE
Confidence 999999999999875422 1 0 0 1111123344566776656777777787655443
No 224
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=7.1e-15 Score=138.20 Aligned_cols=234 Identities=16% Similarity=0.153 Sum_probs=156.3
Q ss_pred CeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCE
Q 016187 87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD---GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHI 163 (394)
Q Consensus 87 ~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d---~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 163 (394)
..+++||....+ ...+..|...+.+.+|+|||++|+..+.. ..|.+||+.+++... +....+.....+|+|+++.
T Consensus 184 ~~l~i~D~~g~~-~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSDGYN-PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCCCCC-ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence 468889985443 44566677889999999999999887743 469999998886543 2333344557899999986
Q ss_pred EE-EecCCC--eEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeC-CCc--EEEEcCCCCceEEEEcCCCCccc
Q 016187 164 VL-AGSEDS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-DAT--LRVWNPKSGENIHVIRGHPYHTE 237 (394)
Q Consensus 164 l~-~~s~d~--~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg~--i~vwd~~~~~~~~~~~~~~~~~~ 237 (394)
++ +.+.++ .|++|++.+++.. .+..+.......+|+|+|+.|+.++. +|. |.++|+.+++.. .+.. ...
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~---~g~ 336 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTF---QGN 336 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-Eeec---CCC
Confidence 64 445555 6999999877643 34455555567899999998887664 444 666677666532 2221 112
Q ss_pred CeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCC---CcEEEEeCCCCC
Q 016187 238 GLTCLTISADSTLALSGSKDG---SVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMD---QKLIIWDLQHSL 311 (394)
Q Consensus 238 ~i~~~~~~~~~~~l~~g~~dg---~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~d---g~i~iwd~~~~~ 311 (394)
.....+|+|+|+.++..+.++ .|.+||+.+++.. .+. +........|+|++++++..+.+ +.|.++++....
T Consensus 337 ~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~ 414 (433)
T PRK04922 337 YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV 414 (433)
T ss_pred CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 234678999999988765433 6999999887654 333 32344567899999987776653 357777776544
Q ss_pred cceeccCCCCEEEEEEeC
Q 016187 312 PRSTCDHEDGVTCLMWLG 329 (394)
Q Consensus 312 ~~~~~~~~~~v~~~~~~~ 329 (394)
......+...+...+|+|
T Consensus 415 ~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 415 RQRLVSADGEVREPAWSP 432 (433)
T ss_pred eEEcccCCCCCCCCccCC
Confidence 333333344455566665
No 225
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=7.7e-15 Score=124.97 Aligned_cols=185 Identities=19% Similarity=0.335 Sum_probs=136.6
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEe-cCCCCEEEEEEcCCCC-EEEEecCCCeEEEEeCCcc----
Q 016187 108 DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE-GPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRA---- 181 (394)
Q Consensus 108 ~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~~s~d~~i~iw~~~~~---- 181 (394)
-.++.++|++.-..+|++..|-.|++|+-+. +....++ ..+..|++++|-|.+. .|+.|+ -+-|.+|.....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgC-r~gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGC-RAGICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeee-cceeEEEEcCcccccc
Confidence 3477899999767789999999999999776 3333443 3456899999999765 455554 466889976421
Q ss_pred ce----------eeeecccCcCeEEEEECCCCCeEEEEeC-CCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCE
Q 016187 182 AY----------LNMFSGHGSSVTCGDFTPDGKTICTGSD-DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTL 250 (394)
Q Consensus 182 ~~----------~~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 250 (394)
.. +...++| .+|++++|.+||..+++++. |..|.|||+.+++.+... +....+++-+.||||+.+
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~---~~glgg~slLkwSPdgd~ 252 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI---PKGLGGFSLLKWSPDGDV 252 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc---ccCCCceeeEEEcCCCCE
Confidence 11 1123455 68999999999999998876 567999999998876543 224567889999999999
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeC
Q 016187 251 ALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSM 298 (394)
Q Consensus 251 l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~ 298 (394)
++++.-|+..++|+.........-.-..+.|....|+|.|++|+....
T Consensus 253 lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 253 LFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS 300 (445)
T ss_pred EEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc
Confidence 999999999999976544322222234458899999999998765543
No 226
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.70 E-value=8.9e-17 Score=140.69 Aligned_cols=229 Identities=16% Similarity=0.260 Sum_probs=190.5
Q ss_pred CEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEc
Q 016187 151 GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230 (394)
Q Consensus 151 ~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 230 (394)
+...+.++.+|.+++.|+..|.+-.+|..++++...+.. ...|.++.|..+.+++|.+ +...+.||| ..|..+++++
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~~GtElHClk 207 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVA-QKKYVYVYD-NNGTELHCLK 207 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhh-hhceEEEec-CCCcEEeehh
Confidence 345688999999999999999999999999887776643 3467788888777776665 567899999 4578888887
Q ss_pred CCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 016187 231 GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHS 310 (394)
Q Consensus 231 ~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~ 310 (394)
.+ ..+..+.|-|---+|++++..|.++.-|+.+|+++..+....+.+..+.-+|-...+-+|...|+|.+|.....
T Consensus 208 ~~----~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk 283 (545)
T KOG1272|consen 208 RH----IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK 283 (545)
T ss_pred hc----CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc
Confidence 53 45778889898888999999999999999999999988888888999999999999999999999999998766
Q ss_pred Ccc-eeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 311 LPR-STCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 311 ~~~-~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
.+. ....|..+|.++++.++|+|.+|.+.|..++|||++....+.++.. .-+...++||..| ++.+|....|.||.
T Consensus 284 ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 284 EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIWK 360 (545)
T ss_pred chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeeeeeh
Confidence 554 3456899999999999999999999999999999999887777665 4456788888644 45566666788884
No 227
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=1.8e-14 Score=135.09 Aligned_cols=235 Identities=20% Similarity=0.241 Sum_probs=150.9
Q ss_pred CCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCC
Q 016187 86 DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD---GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162 (394)
Q Consensus 86 d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d---~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (394)
...+.+||.. +.....+..+...+.+.+|||||+.|+..+.. ..|.+||+.+++... +....+.....+|+|+++
T Consensus 175 ~~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 175 RYQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGR 252 (427)
T ss_pred ccEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCC
Confidence 4567777764 44445566788899999999999999877643 359999999887543 333345566889999998
Q ss_pred EEE-EecCCCeEEEE--eCCccceeeeecccCcCeEEEEECCCCCeEEEEeC-CCcEEEEcC--CCCceEEEEcCCCCcc
Q 016187 163 IVL-AGSEDSTVWMW--NADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-DATLRVWNP--KSGENIHVIRGHPYHT 236 (394)
Q Consensus 163 ~l~-~~s~d~~i~iw--~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~--~~~~~~~~~~~~~~~~ 236 (394)
.|+ +.+.++...+| ++..+. ...+..+........|+|||+.|+..+. +|...+|.+ .+++. ..+.. ..
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~---~g 327 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTF---TG 327 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEec---CC
Confidence 775 56777765555 454444 3444445555566789999998876554 466666654 34432 22221 11
Q ss_pred cCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCC-c--EEEEeCCCC
Q 016187 237 EGLTCLTISADSTLALSGSKDG---SVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQ-K--LIIWDLQHS 310 (394)
Q Consensus 237 ~~i~~~~~~~~~~~l~~g~~dg---~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg-~--i~iwd~~~~ 310 (394)
.......|+|+|++++..+.++ .|.+||+.+++.. .+... .......|+|++++|+..+.++ . +.+.++...
T Consensus 328 ~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~ 405 (427)
T PRK02889 328 SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGR 405 (427)
T ss_pred CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEECCCC
Confidence 2233568999999988776554 6999999887644 33322 3346789999999888776544 2 444455333
Q ss_pred CcceeccCCCCEEEEEEeC
Q 016187 311 LPRSTCDHEDGVTCLMWLG 329 (394)
Q Consensus 311 ~~~~~~~~~~~v~~~~~~~ 329 (394)
.......+...+...+|+|
T Consensus 406 ~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 406 IKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred ceEEeecCCCCCCCCccCC
Confidence 2222223344455566665
No 228
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=1.4e-14 Score=136.23 Aligned_cols=234 Identities=15% Similarity=0.108 Sum_probs=158.3
Q ss_pred CcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecC---CCeEEEEeCCccceeeeecccCcCeEEEEECCCCCe
Q 016187 129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE---DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKT 205 (394)
Q Consensus 129 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~---d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 205 (394)
..|.+||...+. ...+..+...+...+|+|+++.|+..+. ...|++|++.+++... +........+.+|+|+|+.
T Consensus 184 ~~l~i~D~~g~~-~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSDGYN-PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCCCCC-ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence 468899986443 3445556677889999999998887763 3479999998776433 2233334456799999997
Q ss_pred EE-EEeCCC--cEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEe-CCCc--EEEEECCCCcEEEEeccCCC
Q 016187 206 IC-TGSDDA--TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS-KDGS--VHMVNITTGKVVSSLVSHTD 279 (394)
Q Consensus 206 l~-s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~-~dg~--i~i~d~~~~~~~~~~~~h~~ 279 (394)
|+ +.+.+| .|.+||+.+++.. .+..+ .......+|+|+++.++..+ .+|. |.++++.+++.. .+..+..
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~---~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~ 336 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQLT-RLTNH---FGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGN 336 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCeE-ECccC---CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-EeecCCC
Confidence 75 455555 5999999887643 23222 22345678999999887665 3444 777787776533 2322333
Q ss_pred CEEEEEECCCCCeEEEEeCCC---cEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCC---CeEEEEECCCCeE
Q 016187 280 SIECIGFSRSSPWAATGSMDQ---KLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVD---GKVRVWDSLSGDC 353 (394)
Q Consensus 280 ~i~~v~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d---g~i~iwd~~~~~~ 353 (394)
.....+|+|++++++..+.++ .|.+||+.....+.. .+........|+|++++|+..+.+ +.|+++++. +..
T Consensus 337 ~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~L-t~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~ 414 (433)
T PRK04922 337 YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTL-TPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRV 414 (433)
T ss_pred CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEEC-CCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCc
Confidence 445689999999988765443 589999876654432 233234456899999988876653 468888874 555
Q ss_pred EEEeecccCceeEEEEcc
Q 016187 354 VRTFSGHRDAIQAISVSA 371 (394)
Q Consensus 354 ~~~~~~h~~~v~~l~~~~ 371 (394)
.+.+..+.+.+...+|+|
T Consensus 415 ~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 415 RQRLVSADGEVREPAWSP 432 (433)
T ss_pred eEEcccCCCCCCCCccCC
Confidence 666766667777778876
No 229
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=4.8e-14 Score=132.79 Aligned_cols=234 Identities=15% Similarity=0.075 Sum_probs=156.6
Q ss_pred CCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCC
Q 016187 86 DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL---DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162 (394)
Q Consensus 86 d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~---d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (394)
...+++||.... ....+..|...+.+.+|||||+.|+..+. +..|.+||+.+++.. .+....+.+...+|+|+|+
T Consensus 181 ~~~l~~~d~dg~-~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 181 IKRLAIMDQDGA-NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred ceEEEEECCCCC-CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCC
Confidence 347888887544 44556778889999999999999887764 468999999888654 3444556677889999998
Q ss_pred EEE-EecCCCe--EEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeC-CC--cEEEEcCCCCceEEEEcCCCCcc
Q 016187 163 IVL-AGSEDST--VWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-DA--TLRVWNPKSGENIHVIRGHPYHT 236 (394)
Q Consensus 163 ~l~-~~s~d~~--i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~ 236 (394)
.|+ +.+.++. |++|++.++... .+..+........|+|||+.|+..+. +| .|.+||+.+++. ..+.. ..
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~---~~ 333 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISF---GG 333 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeec---CC
Confidence 764 5555554 777788877653 34455555667899999998887664 33 578888766543 33321 12
Q ss_pred cCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCC------CcEEEEeC
Q 016187 237 EGLTCLTISADSTLALSGSKD---GSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMD------QKLIIWDL 307 (394)
Q Consensus 237 ~~i~~~~~~~~~~~l~~g~~d---g~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~d------g~i~iwd~ 307 (394)
.......|+|+|+.++..+.+ ..|.+||+..+.. ..+. ....+....|+|++++++..+.+ ..+.++|+
T Consensus 334 ~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl 411 (435)
T PRK05137 334 GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL 411 (435)
T ss_pred CcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence 335567899999998876543 3688889865543 3332 22356778999999988765543 25777777
Q ss_pred CCCCcceeccCCCCEEEEEEeC
Q 016187 308 QHSLPRSTCDHEDGVTCLMWLG 329 (394)
Q Consensus 308 ~~~~~~~~~~~~~~v~~~~~~~ 329 (394)
........ .....+...+|+|
T Consensus 412 ~g~~~~~l-~~~~~~~~p~Wsp 432 (435)
T PRK05137 412 TGRNEREV-PTPGDASDPAWSP 432 (435)
T ss_pred CCCceEEc-cCCCCccCcccCC
Confidence 65433322 1223344455655
No 230
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=7.4e-15 Score=126.28 Aligned_cols=236 Identities=18% Similarity=0.223 Sum_probs=167.3
Q ss_pred CEEEEEEcCCCC--EEEEecCCCeEEEEeCCccceee------eecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCC
Q 016187 151 GVEWVSWHPRGH--IVLAGSEDSTVWMWNADRAAYLN------MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222 (394)
Q Consensus 151 ~v~~~~~~~~~~--~l~~~s~d~~i~iw~~~~~~~~~------~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 222 (394)
.+..++|..++. .+...+.+..+..+......+.. ...+...+|..++.. ...|++|-.+|.+.+|..+.
T Consensus 57 ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~ 134 (412)
T KOG3881|consen 57 RISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKS 134 (412)
T ss_pred hhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEeccC
Confidence 344455544332 34444455555555544333222 223334455544432 34788889999999999874
Q ss_pred Cc----eEEEEcCCCCcccCeEEEEEcCCCC-EEEEEeCC--CcEEEEECCCCcEEEEeccC---------CCCEEEEEE
Q 016187 223 GE----NIHVIRGHPYHTEGLTCLTISADST-LALSGSKD--GSVHMVNITTGKVVSSLVSH---------TDSIECIGF 286 (394)
Q Consensus 223 ~~----~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~g~~d--g~i~i~d~~~~~~~~~~~~h---------~~~i~~v~~ 286 (394)
+. .+..+.. ..++..+.-++... ++++|+.. ..+++||+.+.+.+.+-..- .-+++++.|
T Consensus 135 ~d~hss~l~~la~----g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 135 GDLHSSKLIKLAT----GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred Cccccccceeeec----CCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 43 1222221 13455555555444 55558888 78999999988766554321 225678889
Q ss_pred CCC--CCeEEEEeCCCcEEEEeCCCCC-cceec-cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEE-eeccc
Q 016187 287 SRS--SPWAATGSMDQKLIIWDLQHSL-PRSTC-DHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRT-FSGHR 361 (394)
Q Consensus 287 ~~~--~~~l~s~s~dg~i~iwd~~~~~-~~~~~-~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~-~~~h~ 361 (394)
-+. ...||+++.-+.+++||+++.. +...+ ..+.+++++...|.+++|++|..-|.+..||.+.++.+.. |.|..
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~t 290 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGIT 290 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCcc
Confidence 887 7789999999999999998642 22222 3467899999999999999999999999999999999887 89999
Q ss_pred CceeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 362 DAIQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 362 ~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
+.|.++..+|.++++|+||.|+.+||+|+++
T Consensus 291 Gsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 291 GSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred CCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 9999999999999999999999999999876
No 231
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.68 E-value=6.2e-16 Score=137.78 Aligned_cols=136 Identities=25% Similarity=0.415 Sum_probs=115.8
Q ss_pred CcEEEEEEcCCCCcEEEEecCCCeEEEEEcCC--------------Ceee--------------EeecCcccCEEEEEEc
Q 016187 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQ--------------GDWA--------------SEIQGHKDSVSSLAFS 116 (394)
Q Consensus 65 ~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~--------------~~~~--------------~~~~~h~~~V~~v~~s 116 (394)
..|+|+.|-|.+..++...-.++..++++.+. +... ..+.--.+.|...+||
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS 299 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS 299 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence 68999999997777777778889999997421 1110 1111124578899999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEE
Q 016187 117 MDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTC 196 (394)
Q Consensus 117 ~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~ 196 (394)
|||++||+.|.||.+||+|..+.+++..++.-.+...|++|+|||+++++|+.|--|.+|.+...+.+..-+||.+.|+.
T Consensus 300 ~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~ 379 (636)
T KOG2394|consen 300 PDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSV 379 (636)
T ss_pred CCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceee
Confidence 99999999999999999999999988888888889999999999999999999999999999999999999999999999
Q ss_pred EEEC
Q 016187 197 GDFT 200 (394)
Q Consensus 197 ~~~~ 200 (394)
++|.
T Consensus 380 VaFD 383 (636)
T KOG2394|consen 380 VAFD 383 (636)
T ss_pred Eeec
Confidence 9998
No 232
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.67 E-value=6.6e-15 Score=124.59 Aligned_cols=246 Identities=17% Similarity=0.326 Sum_probs=186.2
Q ss_pred CeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEe-CCCCceEEEE-ecCCCCEEEEEEcCCCCEEEEecCCCeEE
Q 016187 97 GDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD-PSSGNLKCTL-EGPGGGVEWVSWHPRGHIVLAGSEDSTVW 174 (394)
Q Consensus 97 ~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd-~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~s~d~~i~ 174 (394)
..+.+.++||.+.|+....-|...-+++.+.|.++|||- ...++.-..+ .....+++++.+++....|+.|-..|++.
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEE
Confidence 345567899999999999989888899999999999994 3334332222 22346788999999999999999999998
Q ss_pred EEeC----CccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCE
Q 016187 175 MWNA----DRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTL 250 (394)
Q Consensus 175 iw~~----~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 250 (394)
-+.+ +.....+.+..|...+..+-|+-..+++++.+.|..+.---.+.+..+.... .....+.+.+.- .+
T Consensus 94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~----~~~~~t~~~~d~--~~ 167 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN----FETPASALQFDA--LY 167 (404)
T ss_pred EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE----eeccCCCCceee--EE
Confidence 8865 4456677888999999999999888999999999988655455544332111 000111111111 15
Q ss_pred EEEEeCCCcEEEEEC--CCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC--CcceeccCCCCEEEEE
Q 016187 251 ALSGSKDGSVHMVNI--TTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHS--LPRSTCDHEDGVTCLM 326 (394)
Q Consensus 251 l~~g~~dg~i~i~d~--~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~v~~~~ 326 (394)
...|...|.+....+ ....++.++.+|.+++.++.|.+....|.+|..|..+..||+-.. ......+|...|..+.
T Consensus 168 ~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~ 247 (404)
T KOG1409|consen 168 AFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALS 247 (404)
T ss_pred EEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhh
Confidence 666777777666544 445678899999999999999999999999999999999998543 3344567888888888
Q ss_pred EeCCCCEEEEEeCCCeEEEEEC
Q 016187 327 WLGTSKYVVTGCVDGKVRVWDS 348 (394)
Q Consensus 327 ~~~~~~~l~sg~~dg~i~iwd~ 348 (394)
+.+--+.+++++.||.|-+|+.
T Consensus 248 ~~~~t~~l~S~~edg~i~~w~m 269 (404)
T KOG1409|consen 248 YAQHTRQLISCGEDGGIVVWNM 269 (404)
T ss_pred hhhhheeeeeccCCCeEEEEec
Confidence 8888889999999999999986
No 233
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.67 E-value=8.2e-14 Score=116.91 Aligned_cols=233 Identities=15% Similarity=0.246 Sum_probs=156.2
Q ss_pred EEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEE-EEeCC------CcEEEEcCCCCc
Q 016187 152 VEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC-TGSDD------ATLRVWNPKSGE 224 (394)
Q Consensus 152 v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~d------g~i~vwd~~~~~ 224 (394)
...++|+.+...+++|. |.-.+||+.+--+....-+.+...+.-+...-..++|+ .|+.+ ..|.|||=...+
T Consensus 8 ~lsvs~NQD~ScFava~-~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~ 86 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVAT-DTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKER 86 (346)
T ss_pred eeEEEEccCCceEEEEe-cCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCc
Confidence 44589998877666654 55588998764322111111111111111111234444 33332 479999966666
Q ss_pred eEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCcEEEEeccCC--CCEEEEEECCCCCeEEE-EeCCC
Q 016187 225 NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT-TGKVVSSLVSHT--DSIECIGFSRSSPWAAT-GSMDQ 300 (394)
Q Consensus 225 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~-~~~~~~~~~~h~--~~i~~v~~~~~~~~l~s-~s~dg 300 (394)
++..+. ...+|..+.+.++--.++ ..+.|++|... +.+.++.+.-.. ....++.-..+..+||. |-.-|
T Consensus 87 ~i~el~----f~~~I~~V~l~r~riVvv---l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~G 159 (346)
T KOG2111|consen 87 CIIELS----FNSEIKAVKLRRDRIVVV---LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTG 159 (346)
T ss_pred EEEEEE----eccceeeEEEcCCeEEEE---ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccc
Confidence 666554 345788888887643332 46789999987 445555543222 22333332333344544 34468
Q ss_pred cEEEEeCCCCCc---ceeccCCCCEEEEEEeCCCCEEEEEeCCCe-EEEEECCCCeEEEEeec--ccCceeEEEEccCCC
Q 016187 301 KLIIWDLQHSLP---RSTCDHEDGVTCLMWLGTSKYVVTGCVDGK-VRVWDSLSGDCVRTFSG--HRDAIQAISVSAHQD 374 (394)
Q Consensus 301 ~i~iwd~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~-i~iwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~ 374 (394)
.|+|-|+..... .....|...|.|++.+.+|..|||+|..|+ |||||..+|+.+.++.- ....|.+++|+|+..
T Consensus 160 qvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s 239 (346)
T KOG2111|consen 160 QVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS 239 (346)
T ss_pred eEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc
Confidence 999999876544 455689999999999999999999999997 89999999999999873 345699999999999
Q ss_pred EEEEEeCCCcEEEEeccC
Q 016187 375 FLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 375 ~l~s~s~dg~i~iw~~~~ 392 (394)
+||..|+-|++.||.+.+
T Consensus 240 ~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 240 WLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEEEcCCCeEEEEEeec
Confidence 999999999999999865
No 234
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=5.3e-14 Score=131.89 Aligned_cols=235 Identities=15% Similarity=0.141 Sum_probs=154.1
Q ss_pred CcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCC---CeEEEEeCCccceeeeecccCcCeEEEEECCCCCe
Q 016187 129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED---STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKT 205 (394)
Q Consensus 129 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 205 (394)
..|.++|.. |.....+..+...+...+|+|+++.|+..+.+ ..|++||+.+++.... ..........+|+|||+.
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-ANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCE
Confidence 467777764 44434455566788899999999988776643 4699999988765432 223344567899999998
Q ss_pred EE-EEeCCCcEEEEc--CCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeC-CCcEEEEE--CCCCcEEEEeccCCC
Q 016187 206 IC-TGSDDATLRVWN--PKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK-DGSVHMVN--ITTGKVVSSLVSHTD 279 (394)
Q Consensus 206 l~-s~~~dg~i~vwd--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~-dg~i~i~d--~~~~~~~~~~~~h~~ 279 (394)
|+ +.+.+|...||. +..+. ...+..+ ........|+|||+.++..+. ++...+|. +.+++. ..+..+..
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~---~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~ 328 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSG-LRRLTQS---SGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGS 328 (427)
T ss_pred EEEEEccCCCceEEEEECCCCC-cEECCCC---CCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCC
Confidence 86 567788766665 44333 3333322 223456789999998776553 45666664 444443 22222223
Q ss_pred CEEEEEECCCCCeEEEEeCCC---cEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCC---eEEEEECCCCeE
Q 016187 280 SIECIGFSRSSPWAATGSMDQ---KLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDG---KVRVWDSLSGDC 353 (394)
Q Consensus 280 ~i~~v~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg---~i~iwd~~~~~~ 353 (394)
......|+|++++++..+.++ .|.+||+.....+.... ........|+|++++|+.++.++ .+++.++ +++.
T Consensus 329 ~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~ 406 (427)
T PRK02889 329 YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRI 406 (427)
T ss_pred CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCc
Confidence 344578999999998777654 59999987665443322 22345678999999988877544 3555566 5666
Q ss_pred EEEeecccCceeEEEEccC
Q 016187 354 VRTFSGHRDAIQAISVSAH 372 (394)
Q Consensus 354 ~~~~~~h~~~v~~l~~~~~ 372 (394)
.+.+..+.+.+...+|+|-
T Consensus 407 ~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 407 KQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred eEEeecCCCCCCCCccCCC
Confidence 6677767777778888873
No 235
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=3.9e-13 Score=120.89 Aligned_cols=315 Identities=12% Similarity=0.138 Sum_probs=208.1
Q ss_pred cEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEe-----CC-----CcEEEEe
Q 016187 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG-----LD-----GLVQIWD 135 (394)
Q Consensus 66 ~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s-----~d-----~~i~vwd 135 (394)
+++..++++ +++++|- +.+..++|++....+.+.+...- .++++.|||-|.+|.|-- .+ -.+++|+
T Consensus 36 ~~~v~~~S~-~G~lfA~-~~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ 111 (566)
T KOG2315|consen 36 PCNVFAYSN-NGRLFAY-SDNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN 111 (566)
T ss_pred cceeEEEcC-CCcEEEE-EcCCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence 356677887 5677875 46688899998877543333322 689999999999987642 12 3577999
Q ss_pred CCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCC--eEE-----E
Q 016187 136 PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK--TIC-----T 208 (394)
Q Consensus 136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~-----s 208 (394)
+.++.....+......-+...|+++..+.+ =-..+.+.+|+....+.+. -.-|...++...++|.+. .+| .
T Consensus 112 vet~~~~s~~q~k~Q~~W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~ 189 (566)
T KOG2315|consen 112 VETGVQRSQIQKKMQNGWVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEK 189 (566)
T ss_pred eccceehhheehhhhcCcccccccchhhhh-hhhcceEEEEecCCcccee-eeeeccceeeEEecCCCCCceEEEEccCC
Confidence 998655544443222225778888775332 2234789999987643222 123677788889998633 333 2
Q ss_pred EeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCE-EEEEe-----------CCCcEEEEECCCCcEEEEecc
Q 016187 209 GSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTL-ALSGS-----------KDGSVHMVNITTGKVVSSLVS 276 (394)
Q Consensus 209 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~g~-----------~dg~i~i~d~~~~~~~~~~~~ 276 (394)
.+.-+.||||.......-..+....+....-..+.|.+-|+- |+.++ ...+++++++....+...+.
T Consensus 190 kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~- 268 (566)
T KOG2315|consen 190 KGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL- 268 (566)
T ss_pred CCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-
Confidence 456678999987632221111111122222334566665542 22222 23578888887444444443
Q ss_pred CCCCEEEEEECCCCCeEE--EEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeC---CCeEEEEECCCC
Q 016187 277 HTDSIECIGFSRSSPWAA--TGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCV---DGKVRVWDSLSG 351 (394)
Q Consensus 277 h~~~i~~v~~~~~~~~l~--s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~---dg~i~iwd~~~~ 351 (394)
-.++|.++.|+|++.-++ .|-+-.++.|||++.... .. --+++-+++.|+|.|++|+.++- -|.|-|||+.+.
T Consensus 269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v-~d-f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~ 346 (566)
T KOG2315|consen 269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPV-FD-FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR 346 (566)
T ss_pred CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEe-Ee-CCCCCccceEECCCCCEEEEeecCCCCCceEEEeccch
Confidence 478999999999997554 456778899999875422 11 22455678899999999988775 488999999999
Q ss_pred eEEEEeecccCceeEEEEccCCCEEEEEeC------CCcEEEEecc
Q 016187 352 DCVRTFSGHRDAIQAISVSAHQDFLVSVSL------DGTARVFEIA 391 (394)
Q Consensus 352 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~------dg~i~iw~~~ 391 (394)
+++..+..-.. +-..|+|||++|+|+.. |+.++||+..
T Consensus 347 K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 347 KLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred hhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 99988886443 45789999999998864 7889999853
No 236
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=2.7e-13 Score=127.69 Aligned_cols=233 Identities=13% Similarity=0.061 Sum_probs=157.1
Q ss_pred CcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecC---CCeEEEEeCCccceeeeecccCcCeEEEEECCCCCe
Q 016187 129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE---DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKT 205 (394)
Q Consensus 129 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~---d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 205 (394)
..|.+||.... ....+..+...+...+|+|+++.|+..+. +..|++|++.+++.. .+..+...+...+|+|||+.
T Consensus 182 ~~l~~~d~dg~-~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQDGA-NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCCCC-CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence 47888887544 34456667788999999999998877653 468999999877643 34445556677899999998
Q ss_pred EE-EEeCCCc--EEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCcEEEEeccCCC
Q 016187 206 IC-TGSDDAT--LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK-DG--SVHMVNITTGKVVSSLVSHTD 279 (394)
Q Consensus 206 l~-s~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~-dg--~i~i~d~~~~~~~~~~~~h~~ 279 (394)
|+ +.+.++. |.+||+.+++.. .+..+ ........|+|+++.++..+. +| .|+++|+..++. ..+..+..
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~---~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~ 334 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTTT-RLTDS---PAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGG 334 (435)
T ss_pred EEEEEecCCCceEEEEECCCCceE-EccCC---CCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCC
Confidence 75 5555655 777788876543 33322 223456789999998876653 33 688889876654 34433445
Q ss_pred CEEEEEECCCCCeEEEEeCC---CcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCC------CeEEEEECCC
Q 016187 280 SIECIGFSRSSPWAATGSMD---QKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVD------GKVRVWDSLS 350 (394)
Q Consensus 280 ~i~~v~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d------g~i~iwd~~~ 350 (394)
.+....|+|++++++..+.+ ..|.+||+.....+. ......+....|+|++++|+..+.+ ..++++++..
T Consensus 335 ~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~-lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 335 RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERI-LTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG 413 (435)
T ss_pred cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEe-ccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence 56678899999999877654 357888875543322 2222345678899999988765543 3578888765
Q ss_pred CeEEEEeecccCceeEEEEcc
Q 016187 351 GDCVRTFSGHRDAIQAISVSA 371 (394)
Q Consensus 351 ~~~~~~~~~h~~~v~~l~~~~ 371 (394)
+.. +.+.. .+.+...+|+|
T Consensus 414 ~~~-~~l~~-~~~~~~p~Wsp 432 (435)
T PRK05137 414 RNE-REVPT-PGDASDPAWSP 432 (435)
T ss_pred Cce-EEccC-CCCccCcccCC
Confidence 544 45542 44456667765
No 237
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.63 E-value=9.3e-14 Score=115.15 Aligned_cols=154 Identities=18% Similarity=0.368 Sum_probs=109.4
Q ss_pred EEEEcCCCCcEEEEecC--C-------CeEEEEEcCC-CeeeEeecC-cccCEEEEEEcCCCCEEEEE--eCCCcEEEEe
Q 016187 69 SVACSPTDATLVATGGG--D-------DKGFFWRINQ-GDWASEIQG-HKDSVSSLAFSMDGQLLASG--GLDGLVQIWD 135 (394)
Q Consensus 69 ~~~~~p~~~~~lasg~~--d-------~~v~~w~~~~-~~~~~~~~~-h~~~V~~v~~s~~g~~l~t~--s~d~~i~vwd 135 (394)
.+.|+|.+..+++.... | +...+|.++. +.....+.- ..++|.+++|+|+|+.||+. ..+..|.+||
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 46789987776665541 1 1234454422 222333332 34579999999999987654 4667999999
Q ss_pred CCCCceEEEEecCCCCEEEEEEcCCCCEEEEecC---CCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeC-
Q 016187 136 PSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE---DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD- 211 (394)
Q Consensus 136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~---d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~- 211 (394)
+. ++.+..+. ...++.+.|+|+|+++++++. .|.+.+||.++.+.+.... | ..++.++|+|+|++|+++..
T Consensus 90 ~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~ 164 (194)
T PF08662_consen 90 VK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATTS 164 (194)
T ss_pred Cc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEec
Confidence 96 55555553 567889999999999988764 4679999999887776654 3 34688999999999998864
Q ss_pred -----CCcEEEEcCCCCceEEE
Q 016187 212 -----DATLRVWNPKSGENIHV 228 (394)
Q Consensus 212 -----dg~i~vwd~~~~~~~~~ 228 (394)
|..++||+.. |+.+..
T Consensus 165 ~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 165 PRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred cceeccccEEEEEec-CeEeEe
Confidence 7788999974 555544
No 238
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.61 E-value=2.2e-12 Score=114.92 Aligned_cols=314 Identities=14% Similarity=0.148 Sum_probs=211.3
Q ss_pred cCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCC-------------
Q 016187 63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG------------- 129 (394)
Q Consensus 63 h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~------------- 129 (394)
-.-++..+.+||.+ ++|++. .-..|.+|.......+..+. | ..|.-+.|||.+.||.|-+...
T Consensus 31 ~~~p~~~~~~SP~G-~~l~~~-~~~~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~ 106 (561)
T COG5354 31 ENWPVAYVSESPLG-TYLFSE-HAAGVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTS 106 (561)
T ss_pred cCcchhheeecCcc-hheehh-hccceEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCccc
Confidence 34567888999975 556653 34567899987766555554 3 4589999999999999987654
Q ss_pred --cEEEEeCCCCceEEEEecCCCC--EE-EEEEcCCCCEEEEecCCCeEEEEeCCccceeeeeccc---CcCeEEEEECC
Q 016187 130 --LVQIWDPSSGNLKCTLEGPGGG--VE-WVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH---GSSVTCGDFTP 201 (394)
Q Consensus 130 --~i~vwd~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h---~~~v~~~~~~~ 201 (394)
.+.+||..+|..+..+.....+ .. -+.|+-+.+++|-- -...++++++ +.... ....+ ...+....|+|
T Consensus 107 ~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~-~~p~~~lr~~gi~dFsisP 183 (561)
T COG5354 107 KNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIE-EHPFKNLRPVGILDFSISP 183 (561)
T ss_pred cCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccc-cCchhhccccceeeEEecC
Confidence 4999999999998887765544 33 57888888776544 3457888886 22111 11111 24566778888
Q ss_pred CCC--eEEE-----EeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEe-----------CCCcEEEE
Q 016187 202 DGK--TICT-----GSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS-----------KDGSVHMV 263 (394)
Q Consensus 202 ~~~--~l~s-----~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~-----------~dg~i~i~ 263 (394)
.++ .||. ...++++++|.+..+..+..... ..-.-..+.|.+.|.+++.-- ....+.++
T Consensus 184 ~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l---fk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~ 260 (561)
T COG5354 184 EGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL---FKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLL 260 (561)
T ss_pred CCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeee---EeecccEEEEecCCceEEEEEEEeeecccceeccceEEEE
Confidence 543 3332 46678899998876654433211 111223467777777654311 13467888
Q ss_pred ECCCCcEEEEeccCCCCEEEEEECCCCCeEEEE--eCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCC-
Q 016187 264 NITTGKVVSSLVSHTDSIECIGFSRSSPWAATG--SMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVD- 340 (394)
Q Consensus 264 d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~--s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d- 340 (394)
+++...+... ..-.++|...+|.|.+..+++. -.+..+.++|++... .....+..-+.+.|+|..++++.++-|
T Consensus 261 ~~~e~~i~V~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl--~~~~Pe~~rNT~~fsp~~r~il~agF~n 337 (561)
T COG5354 261 RITERSIPVE-KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNL--RFYFPEQKRNTIFFSPHERYILFAGFDN 337 (561)
T ss_pred eeccccccee-ccccccceeeeecccCCceeEEecccccceeecccccce--EEecCCcccccccccCcccEEEEecCCc
Confidence 8874332222 2457899999999998876554 478889999998762 233334455677899999999987765
Q ss_pred --CeEEEEECCCCeE-EEEeecccCceeEEEEccCCCEEEEEe------CCCcEEEEecc
Q 016187 341 --GKVRVWDSLSGDC-VRTFSGHRDAIQAISVSAHQDFLVSVS------LDGTARVFEIA 391 (394)
Q Consensus 341 --g~i~iwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~l~s~s------~dg~i~iw~~~ 391 (394)
|.|-+||...... +..+.+-+. .-..|+||++++.+.- .|..|+||++.
T Consensus 338 l~gni~i~~~~~rf~~~~~~~~~n~--s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 338 LQGNIEIFDPAGRFKVAGAFNGLNT--SYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY 395 (561)
T ss_pred cccceEEeccCCceEEEEEeecCCc--eEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence 7899999765544 446776443 3467999999988763 38899999975
No 239
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.61 E-value=4.4e-14 Score=135.32 Aligned_cols=272 Identities=18% Similarity=0.197 Sum_probs=188.5
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEc-C------CCCEEEEecCCCeEEEEeC
Q 016187 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWH-P------RGHIVLAGSEDSTVWMWNA 178 (394)
Q Consensus 106 h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~------~~~~l~~~s~d~~i~iw~~ 178 (394)
|-.++.+.++-. .+|+.|+ --.|.+||..++..+..+.... .+.+| + .+.+++++..-..+..-+.
T Consensus 6 ~~~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~----~~~~H~~e~~~~l~~~~~v~~~~~~~v~~~~~ 78 (967)
T KOG0974|consen 6 SLGPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSK----ILEVHRGEGKVKLLSGKIVTCAKSDEVYVKEA 78 (967)
T ss_pred ccccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhc----ccccccccccceeccceEEEEEeecceeecch
Confidence 334555555544 5665443 4579999999887654332211 11112 1 1234445444333332222
Q ss_pred CccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCC-cccCeEEEEEcCCCCEEEEEeCC
Q 016187 179 DRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPY-HTEGLTCLTISADSTLALSGSKD 257 (394)
Q Consensus 179 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~g~~d 257 (394)
... ... .-...+....+..+.+.++.++.+..+-+||...+.....+..... ......-+..+++.-++++|+.-
T Consensus 79 ~~~-~~~---~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~ 154 (967)
T KOG0974|consen 79 SNQ-IIE---RFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVF 154 (967)
T ss_pred hhh-hhh---hccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEecccc
Confidence 111 111 1223344455666778899999999999999876654433321110 00112223456777789999999
Q ss_pred CcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcc--eeccCCCCEEEEEEeCCCCEEE
Q 016187 258 GSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPR--STCDHEDGVTCLMWLGTSKYVV 335 (394)
Q Consensus 258 g~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~ 335 (394)
+.|.+|+....+.-..+.+|.+.|..+.++.++.++++.|.|.++++|++.+.... .-.+|..+|..++++|. +++
T Consensus 155 ~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~ 232 (967)
T KOG0974|consen 155 GEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RII 232 (967)
T ss_pred ccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeE
Confidence 99999998744433468899999999999999999999999999999999875433 45689999999999998 999
Q ss_pred EEeCCCeEEEEECCCCeEEEEeeccc-CceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 336 TGCVDGKVRVWDSLSGDCVRTFSGHR-DAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 336 sg~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
+++.|.+.++|+. .++.+..+.+|. ..|+.++..++...++|++.|+.+++|++.
T Consensus 233 t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 233 TVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred EeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence 9999999999954 566777899886 569999999999999999999999999865
No 240
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.61 E-value=1.9e-13 Score=113.24 Aligned_cols=148 Identities=17% Similarity=0.326 Sum_probs=106.2
Q ss_pred EEEEcCCCCEEEEecC----------CCeEEEEeC--Cccceeeeecc-cCcCeEEEEECCCCCeEEEE--eCCCcEEEE
Q 016187 154 WVSWHPRGHIVLAGSE----------DSTVWMWNA--DRAAYLNMFSG-HGSSVTCGDFTPDGKTICTG--SDDATLRVW 218 (394)
Q Consensus 154 ~~~~~~~~~~l~~~s~----------d~~i~iw~~--~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~--~~dg~i~vw 218 (394)
.+.|+|+|.+|+.-.. -+...+|-+ .... ...+.- ..++|.+++|+|+|+.||.. ..++.|.+|
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~-~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIP-VESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCc-cceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 4778888886654322 123444444 3322 333322 34579999999999987554 467899999
Q ss_pred cCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEE
Q 016187 219 NPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK---DGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAAT 295 (394)
Q Consensus 219 d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~---dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s 295 (394)
|++ ++.+..+. ...+..+.|+|+|+++++|+. .|.|.+||+++.+.+.+.. | ..+..++|+|+|+++++
T Consensus 89 d~~-~~~i~~~~-----~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 89 DVK-GKKIFSFG-----TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLAT 160 (194)
T ss_pred cCc-ccEeEeec-----CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEE
Confidence 996 55555543 345778999999999999874 4679999999988887764 3 35789999999999998
Q ss_pred EeC------CCcEEEEeCCCC
Q 016187 296 GSM------DQKLIIWDLQHS 310 (394)
Q Consensus 296 ~s~------dg~i~iwd~~~~ 310 (394)
+.. |+.++||+....
T Consensus 161 a~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred EEeccceeccccEEEEEecCe
Confidence 864 678889987643
No 241
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.59 E-value=3.2e-11 Score=107.61 Aligned_cols=262 Identities=13% Similarity=0.138 Sum_probs=173.7
Q ss_pred CeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeC----------CCcEEEEeCCCCceEEEEecCCC------
Q 016187 87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL----------DGLVQIWDPSSGNLKCTLEGPGG------ 150 (394)
Q Consensus 87 ~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~----------d~~i~vwd~~~~~~~~~~~~~~~------ 150 (394)
+++.+.|..+++.+..+..-..+- .+ +||||+.|+++.. +..|.+||+.+.+.+..+..+..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 889999999999888876433332 24 9999998877765 78999999999999888764322
Q ss_pred -CEEEEEEcCCCCEEEEec-C-CCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCC-CceE
Q 016187 151 -GVEWVSWHPRGHIVLAGS-E-DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS-GENI 226 (394)
Q Consensus 151 -~v~~~~~~~~~~~l~~~s-~-d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~ 226 (394)
....++++|+|++|+... . +..+-+.|+.+++.+..+.--.. ..-...+++. .+ +-+.||........+ |+..
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~-~~vy~t~e~~-~~-~~~~Dg~~~~v~~d~~g~~~ 181 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC-YHIFPTANDT-FF-MHCRDGSLAKVGYGTKGNPK 181 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC-cEEEEecCCc-cE-EEeecCceEEEEecCCCceE
Confidence 223688999999888766 3 68999999999988877654221 1111122222 12 223445444332221 2111
Q ss_pred -E---EEcC--CCCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-----cEEEEecc-------CCCCEEEEEEC
Q 016187 227 -H---VIRG--HPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITTG-----KVVSSLVS-------HTDSIECIGFS 287 (394)
Q Consensus 227 -~---~~~~--~~~~~~~i~~~~~~~-~~~~l~~g~~dg~i~i~d~~~~-----~~~~~~~~-------h~~~i~~v~~~ 287 (394)
. .+.. .+....+ .+.+ +++++++... |+|.+.|+... +.+..+.. ..+.+.-++++
T Consensus 182 ~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~ 256 (352)
T TIGR02658 182 IKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYH 256 (352)
T ss_pred EeeeeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEc
Confidence 0 0100 0000111 2344 8888888777 99999996443 23332211 12334459999
Q ss_pred CCCCeEEEEe----------CCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCC-EEEEEe-CCCeEEEEECCCCeEEE
Q 016187 288 RSSPWAATGS----------MDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSK-YVVTGC-VDGKVRVWDSLSGDCVR 355 (394)
Q Consensus 288 ~~~~~l~s~s----------~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~-~dg~i~iwd~~~~~~~~ 355 (394)
++++.+.... ..+.|.++|+.+........-...+..++++|+++ +|++.. .++.|.+.|+.+++.++
T Consensus 257 ~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 257 RARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELS 336 (352)
T ss_pred CCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEe
Confidence 9998877642 22579999998877666555566889999999999 777666 57889999999999999
Q ss_pred Eee
Q 016187 356 TFS 358 (394)
Q Consensus 356 ~~~ 358 (394)
++.
T Consensus 337 ~i~ 339 (352)
T TIGR02658 337 SVN 339 (352)
T ss_pred eec
Confidence 884
No 242
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.59 E-value=3.9e-13 Score=114.02 Aligned_cols=244 Identities=20% Similarity=0.387 Sum_probs=166.9
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-----eEEEEecCC------------CCEEEEEEcCCCC--EEEE
Q 016187 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN-----LKCTLEGPG------------GGVEWVSWHPRGH--IVLA 166 (394)
Q Consensus 106 h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~~--~l~~ 166 (394)
..+-|.+|.|...|.+||||..+|.|.++.-.... ....++.|. ..|..+.|.++++ .++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 35678999999999999999999999998643221 223333332 3578899998765 6777
Q ss_pred ecCCCeEEEEeCCcccee-----------------------------------ee-ecccCcCeEEEEECCCCCeEEEEe
Q 016187 167 GSEDSTVWMWNADRAAYL-----------------------------------NM-FSGHGSSVTCGDFTPDGKTICTGS 210 (394)
Q Consensus 167 ~s~d~~i~iw~~~~~~~~-----------------------------------~~-~~~h~~~v~~~~~~~~~~~l~s~~ 210 (394)
...|.+|++|.+...... +. -.+|..-|.++.++.|++.++++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA- 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA- 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-
Confidence 789999999986432100 00 13677788999999999988886
Q ss_pred CCCcEEEEcCCCC-ceEEEEcCCCC----cccCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCcEEE---E-e------
Q 016187 211 DDATLRVWNPKSG-ENIHVIRGHPY----HTEGLTCLTISAD-STLALSGSKDGSVHMVNITTGKVVS---S-L------ 274 (394)
Q Consensus 211 ~dg~i~vwd~~~~-~~~~~~~~~~~----~~~~i~~~~~~~~-~~~l~~g~~dg~i~i~d~~~~~~~~---~-~------ 274 (394)
.|=.|.+|++.-- +....+...|. ...-|++..|+|. ...++-.+..|+|++-|++...+.- + +
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 4778999998643 33332222111 1234777788885 5677888899999999998542210 0 1
Q ss_pred ------ccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC-CCcceec-cC------------CCCE---EEEEEeCCC
Q 016187 275 ------VSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQH-SLPRSTC-DH------------EDGV---TCLMWLGTS 331 (394)
Q Consensus 275 ------~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~-~~------------~~~v---~~~~~~~~~ 331 (394)
..--..|..+.|+++|+|+++-+. -+|++||+.. ..+.... .| .+.| ..++|+.++
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~ 341 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND 341 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence 111246888999999999987643 5899999832 2222211 11 1122 457899999
Q ss_pred CEEEEEeCCCeEEEEECCCC
Q 016187 332 KYVVTGCVDGKVRVWDSLSG 351 (394)
Q Consensus 332 ~~l~sg~~dg~i~iwd~~~~ 351 (394)
.+++||+.....++++...|
T Consensus 342 ~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 342 SYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred ceEecccccceEEEecCCCC
Confidence 99999999999999985433
No 243
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.59 E-value=5.3e-13 Score=128.06 Aligned_cols=147 Identities=22% Similarity=0.361 Sum_probs=127.0
Q ss_pred EcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEE-EEecCCC
Q 016187 72 CSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC-TLEGPGG 150 (394)
Q Consensus 72 ~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~-~~~~~~~ 150 (394)
+++ ...++++|+.-+.+.+|+....+....+.||.+.|.++.|+-||+++++.|.|.++|+|++.+.+... +.-+|.+
T Consensus 141 ~s~-~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsa 219 (967)
T KOG0974|consen 141 DSA-EELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSA 219 (967)
T ss_pred ccC-cEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccc
Confidence 455 46789999999999999987544444689999999999999999999999999999999999988765 6678999
Q ss_pred CEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccC-cCeEEEEECCCCCeEEEEeCCCcEEEEcCCC
Q 016187 151 GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHG-SSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222 (394)
Q Consensus 151 ~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 222 (394)
.+..+.|+|+ .+++++.|-+.++|..+..+ +..+.+|. ..+..++..++...++|++.|+.+++|+...
T Consensus 220 Rvw~~~~~~n--~i~t~gedctcrvW~~~~~~-l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 220 RVWACCFLPN--RIITVGEDCTCRVWGVNGTQ-LEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred eeEEEEeccc--eeEEeccceEEEEEecccce-ehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 9999999998 89999999999999766544 34677774 5688899999999999999999999999754
No 244
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.58 E-value=1.5e-12 Score=122.47 Aligned_cols=213 Identities=17% Similarity=0.170 Sum_probs=143.7
Q ss_pred CCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCC
Q 016187 86 DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD---GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162 (394)
Q Consensus 86 d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d---~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (394)
...+.++|....+ ...+..+...+.+.+|+|||++|+.++.. ..|++||+.+++.... ....+.+..++|+|+++
T Consensus 169 ~~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 169 RYELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGS 246 (417)
T ss_pred cceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCC
Confidence 4457778875443 34455677789999999999999877654 4799999998865432 33445566789999998
Q ss_pred EEE-EecCCC--eEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeC-CC--cEEEEcCCCCceEEEEcCCCCcc
Q 016187 163 IVL-AGSEDS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-DA--TLRVWNPKSGENIHVIRGHPYHT 236 (394)
Q Consensus 163 ~l~-~~s~d~--~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~ 236 (394)
.|+ +.+.++ .|++|++.+++... +..+........|+|+|++|+..+. .+ .|.++|+.+++.. .+.. +.
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~---~~ 321 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTF---RG 321 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEE-CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Eeec---CC
Confidence 665 445444 58889988765433 3344444456789999998876654 33 5777888766543 2221 22
Q ss_pred cCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCC---cEEEEeC
Q 016187 237 EGLTCLTISADSTLALSGSKDG---SVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQ---KLIIWDL 307 (394)
Q Consensus 237 ~~i~~~~~~~~~~~l~~g~~dg---~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg---~i~iwd~ 307 (394)
.......++|++++++.++.++ .|.+||+.++... .+... .......|+|++.+|+..+.++ .+.+.+.
T Consensus 322 ~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 322 GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 3456678999999998887776 7899999876532 22222 2334568999999888776654 3444443
No 245
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.58 E-value=3.3e-13 Score=122.18 Aligned_cols=189 Identities=17% Similarity=0.250 Sum_probs=149.4
Q ss_pred CCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEE--------------------cCCCCEEEEEeCCCcE
Q 016187 201 PDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTI--------------------SADSTLALSGSKDGSV 260 (394)
Q Consensus 201 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~--------------------~~~~~~l~~g~~dg~i 260 (394)
|...++|....||.+|+|++..++....+.......+..++..| +.+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 45678999999999999999988766555432222333334333 2234577889999999
Q ss_pred EEEECCCCcEEEEec--cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCccee-ccCCCCEEEEEEeCCCCEEEEE
Q 016187 261 HMVNITTGKVVSSLV--SHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRST-CDHEDGVTCLMWLGTSKYVVTG 337 (394)
Q Consensus 261 ~i~d~~~~~~~~~~~--~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~sg 337 (394)
.++++..+++-..+. .|.+.|+++.++.+...+.|++.|..+..|+.+....... ......+.+++.+||+..|++|
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a 162 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA 162 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence 999999998877765 5899999999999999999999999999999876543322 2345568889999999999988
Q ss_pred eCCCeEEEEECCCCeEEEEeecccCceeEEEEccC-----CCEEEE-EeCCCcEEEEecc
Q 016187 338 CVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAH-----QDFLVS-VSLDGTARVFEIA 391 (394)
Q Consensus 338 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~-----~~~l~s-~s~dg~i~iw~~~ 391 (394)
+ +.|++||+.+++.+..|+||.++|.++.|... |.++++ ...+.-|.+|-+.
T Consensus 163 s--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 163 S--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred c--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 6 78999999999999999999999999999877 666554 4567778888654
No 246
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.58 E-value=2.7e-11 Score=112.25 Aligned_cols=299 Identities=16% Similarity=0.129 Sum_probs=185.3
Q ss_pred EEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEc
Q 016187 79 LVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWH 158 (394)
Q Consensus 79 ~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 158 (394)
.+..++.++.+.-+|..+++.+-...-.......+. .++..++.++.++.+..+|..+|+.+....... .+......
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v 143 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLV 143 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCEE
Confidence 455567788999999988887654433222112222 246778888899999999999999876554322 22211111
Q ss_pred CCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEE-ECC--CCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCc
Q 016187 159 PRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGD-FTP--DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYH 235 (394)
Q Consensus 159 ~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~-~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 235 (394)
.+..++.++.++.++.||.++++.+-.+........... -+| .+..++.+..++.+..+|+++|+.+.........
T Consensus 144 -~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~ 222 (377)
T TIGR03300 144 -ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPK 222 (377)
T ss_pred -ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCC
Confidence 245677788899999999998876654433221111000 011 2346788888999999999998765433211000
Q ss_pred -cc---CeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC
Q 016187 236 -TE---GLTCLTISA--DSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQH 309 (394)
Q Consensus 236 -~~---~i~~~~~~~--~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~ 309 (394)
.. .+..+.-+| .+..+++++.+|.+..+|+.+|+.+-..... ...... ..+..++.++.+|.+..+|..+
T Consensus 223 g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~--~~~~~vyv~~~~G~l~~~d~~t 298 (377)
T TIGR03300 223 GRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPA--VDDNRLYVTDADGVVVALDRRS 298 (377)
T ss_pred CCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCce--EeCCEEEEECCCCeEEEEECCC
Confidence 00 000000111 2457777888999999999999876554311 111111 2355777788899999999876
Q ss_pred CCcceec-cCCC-CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEE
Q 016187 310 SLPRSTC-DHED-GVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARV 387 (394)
Q Consensus 310 ~~~~~~~-~~~~-~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~i 387 (394)
....... .... ...+... .+.+|++++.+|.|+++|..+|+.+.+++.+...+..--.-.+ +.|+.++.||.|..
T Consensus 299 G~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~-~~l~v~~~dG~l~~ 375 (377)
T TIGR03300 299 GSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVG-DGLLVQTRDGDLYA 375 (377)
T ss_pred CcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEEC-CEEEEEeCCceEEE
Confidence 6544322 1111 1111111 3568899999999999999999999988876654433222233 45778999998876
Q ss_pred E
Q 016187 388 F 388 (394)
Q Consensus 388 w 388 (394)
|
T Consensus 376 ~ 376 (377)
T TIGR03300 376 F 376 (377)
T ss_pred e
Confidence 6
No 247
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.56 E-value=4.6e-12 Score=119.18 Aligned_cols=232 Identities=14% Similarity=0.116 Sum_probs=151.7
Q ss_pred CcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCC---CeEEEEeCCccceeeeecccCcCeEEEEECCCCCe
Q 016187 129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED---STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKT 205 (394)
Q Consensus 129 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 205 (394)
..|.++|...++ ...+..+...+...+|+|+++.|+.++.. ..|++|++.+++... +..+...+.+.+|+|+|+.
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 357888875443 34455566678889999999988776543 479999998775433 2334455667899999987
Q ss_pred EE-EEeCCC--cEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCcEEEEeccCCC
Q 016187 206 IC-TGSDDA--TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK-DG--SVHMVNITTGKVVSSLVSHTD 279 (394)
Q Consensus 206 l~-s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~-dg--~i~i~d~~~~~~~~~~~~h~~ 279 (394)
|+ +.+.++ .|.+||+.+++.. .+..+ ........|+|+++.++..+. .+ .|.++++.+++.. .+..+..
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~---~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~ 322 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLT-RLTNG---PGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGG 322 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEE-ECCCC---CCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCC
Confidence 76 444444 5888998876543 22221 122345689999998776554 33 5888888777643 4444556
Q ss_pred CEEEEEECCCCCeEEEEeCCC---cEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCC---eEEEEECCCCeE
Q 016187 280 SIECIGFSRSSPWAATGSMDQ---KLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDG---KVRVWDSLSGDC 353 (394)
Q Consensus 280 ~i~~v~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg---~i~iwd~~~~~~ 353 (394)
.+..+.|+|++.+++..+.++ .|.+||+.......... ........|+|++++|+..+.++ .+++.+ .+++.
T Consensus 323 ~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~-~~g~~ 400 (417)
T TIGR02800 323 YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTD-TGLDESPSFAPNGRMILYATTRGGRGVLGLVS-TDGRF 400 (417)
T ss_pred CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccC-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEE-CCCce
Confidence 677889999999999888776 78889987644332222 12234457999999888877654 355555 34555
Q ss_pred EEEeecccCceeEEEE
Q 016187 354 VRTFSGHRDAIQAISV 369 (394)
Q Consensus 354 ~~~~~~h~~~v~~l~~ 369 (394)
...+..+.+.+..+.|
T Consensus 401 ~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 401 RARLPLGNGDVREPAW 416 (417)
T ss_pred eeECCCCCCCcCCCCC
Confidence 5555544444444433
No 248
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=6e-12 Score=118.69 Aligned_cols=233 Identities=15% Similarity=0.127 Sum_probs=147.6
Q ss_pred eEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEE
Q 016187 88 KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD---GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIV 164 (394)
Q Consensus 88 ~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d---~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 164 (394)
.+.++|...++. ..+..+...+....|||||++|+..+.+ ..|.+|++.+++... +....+.....+|+|+|+.|
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence 466777765543 4455677889999999999998876644 368899998886543 23333445568999999877
Q ss_pred E-EecCCC--eEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeC-CC--cEEEEcCCCCceEEEEcCCCCcccC
Q 016187 165 L-AGSEDS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-DA--TLRVWNPKSGENIHVIRGHPYHTEG 238 (394)
Q Consensus 165 ~-~~s~d~--~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~ 238 (394)
+ +.+.++ .|++||+.+++..+ +..+........|+|+|+.|+..+. +| .|.++++.+++... +.. ....
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~---~~~~ 332 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTF---VGNY 332 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eec---CCCC
Confidence 5 444454 68888998776433 4445555566789999998776553 33 57777877766432 221 1112
Q ss_pred eEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCC-C--cEEEEeCCCCCc
Q 016187 239 LTCLTISADSTLALSGSKD-G--SVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMD-Q--KLIIWDLQHSLP 312 (394)
Q Consensus 239 i~~~~~~~~~~~l~~g~~d-g--~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~d-g--~i~iwd~~~~~~ 312 (394)
.....|+|+++.++..+.. + .|.++|+.+++.. .+. +........|+|++++++..+.+ + .+.++++.....
T Consensus 333 ~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~ 410 (430)
T PRK00178 333 NARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVR 410 (430)
T ss_pred ccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-Ecc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 3346799999988776543 3 5888999887642 222 22222356899999988776543 3 455666654333
Q ss_pred ceeccCCCCEEEEEEeC
Q 016187 313 RSTCDHEDGVTCLMWLG 329 (394)
Q Consensus 313 ~~~~~~~~~v~~~~~~~ 329 (394)
.....+...+...+|+|
T Consensus 411 ~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 411 LPLPTAQGEVREPSWSP 427 (430)
T ss_pred EECcCCCCCcCCCccCC
Confidence 22222233344455554
No 249
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=1.4e-11 Score=110.93 Aligned_cols=315 Identities=15% Similarity=0.162 Sum_probs=193.3
Q ss_pred EEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCC-----------CcEEEEeC
Q 016187 68 YSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD-----------GLVQIWDP 136 (394)
Q Consensus 68 ~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d-----------~~i~vwd~ 136 (394)
+-+.|||. +.+|+|-- -.-|.+|--++...++.+. |. .|.-+.|||..+||+|-|.- ..++|||+
T Consensus 214 tyv~wSP~-GTYL~t~H-k~GI~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 214 TYVRWSPK-GTYLVTFH-KQGIALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeEEecCC-ceEEEEEe-ccceeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 56789996 56777754 4556789766655555554 54 48889999999999998742 57899999
Q ss_pred CCCceEEEEecCCC---CEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEe---
Q 016187 137 SSGNLKCTLEGPGG---GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS--- 210 (394)
Q Consensus 137 ~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~--- 210 (394)
.+|..+..+....+ .-.-..|+.+++++|.-.. .+|.||+..+..++-.-.-.-..|....|+|.++.||-=.
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~ 368 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPET 368 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccc
Confidence 99998877765322 1233689999999877655 6788888765333222122234566778999877665211
Q ss_pred --CCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEE----------eCCCcEEEEECCCCcEEEEeccCC
Q 016187 211 --DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSG----------SKDGSVHMVNITTGKVVSSLVSHT 278 (394)
Q Consensus 211 --~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g----------~~dg~i~i~d~~~~~~~~~~~~h~ 278 (394)
.-..+.+-.+.+++.+.....+. -.=..+-|-.+|.+|..- +.=..+.|+.++...+--....-.
T Consensus 369 ~~~parvtL~evPs~~~iRt~nlfn---VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velk 445 (698)
T KOG2314|consen 369 NNIPARVTLMEVPSKREIRTKNLFN---VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELK 445 (698)
T ss_pred cCCcceEEEEecCccceeeecccee---eeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecc
Confidence 11233344444444333322110 011124455566665432 111234555555443222222345
Q ss_pred CCEEEEEECCCCCeEEEEeC---CCcEEEEeCCCCCcce-ec--cCCCCEEEEEEeCCCCEEEEE---eCCCeEEEEECC
Q 016187 279 DSIECIGFSRSSPWAATGSM---DQKLIIWDLQHSLPRS-TC--DHEDGVTCLMWLGTSKYVVTG---CVDGKVRVWDSL 349 (394)
Q Consensus 279 ~~i~~v~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~-~~--~~~~~v~~~~~~~~~~~l~sg---~~dg~i~iwd~~ 349 (394)
+.|-..+|-|.|..+++-+. ..++.+|-+.+..... .. -.....+.+.|+|.|++++.+ |..|.+.++|..
T Consensus 446 e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 446 ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTD 525 (698)
T ss_pred hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecc
Confidence 77888999999987665442 3567888776321111 10 112345778999999998876 457899999987
Q ss_pred CCeEEEE-eecccCceeEEEEccCCCEEEEEeC------CCcEEEEecc
Q 016187 350 SGDCVRT-FSGHRDAIQAISVSAHQDFLVSVSL------DGTARVFEIA 391 (394)
Q Consensus 350 ~~~~~~~-~~~h~~~v~~l~~~~~~~~l~s~s~------dg~i~iw~~~ 391 (394)
...+... ...|. ..+.+.|.|.|+|+++++. |.--+||+++
T Consensus 526 ~a~~k~~~~~eh~-~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 526 YADLKDTASPEHF-AATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred hhhhhhccCcccc-ccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence 5333322 22344 3578999999999999875 4456677653
No 250
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.52 E-value=5.1e-10 Score=102.11 Aligned_cols=270 Identities=16% Similarity=0.237 Sum_probs=173.8
Q ss_pred EEEEeCC----CcEEEEeC--CCCceEEEE-ecCCCCEEEEEEcCCCCEEEEecC----CCeEEEEeCCcc----ceeee
Q 016187 122 LASGGLD----GLVQIWDP--SSGNLKCTL-EGPGGGVEWVSWHPRGHIVLAGSE----DSTVWMWNADRA----AYLNM 186 (394)
Q Consensus 122 l~t~s~d----~~i~vwd~--~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~s~----d~~i~iw~~~~~----~~~~~ 186 (394)
++.|+.. +.|.+|.+ .++++...- ........+++++|++++|++... .+.|..|.+... ..+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 4456655 67888776 555543211 123455678999999998888766 568888887543 23333
Q ss_pred ecccCcCeEEEEECCCCCeEEEEe-CCCcEEEEcCCCCceEEE----EcC-----C--CCcccCeEEEEEcCCCCEEEEE
Q 016187 187 FSGHGSSVTCGDFTPDGKTICTGS-DDATLRVWNPKSGENIHV----IRG-----H--PYHTEGLTCLTISADSTLALSG 254 (394)
Q Consensus 187 ~~~h~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~----~~~-----~--~~~~~~i~~~~~~~~~~~l~~g 254 (394)
..........++++|++++|+++. .+|+|.++++.....+.. +.. . ........++.++|+++++++.
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 333344556789999999988876 489999999977422221 110 0 1123457789999999988776
Q ss_pred e-CCCcEEEEECCCCc--EE--EEec-cCCCCEEEEEECCCCCeEEEE-eCCCcEEEEeCC--CCCcce-----ec----
Q 016187 255 S-KDGSVHMVNITTGK--VV--SSLV-SHTDSIECIGFSRSSPWAATG-SMDQKLIIWDLQ--HSLPRS-----TC---- 316 (394)
Q Consensus 255 ~-~dg~i~i~d~~~~~--~~--~~~~-~h~~~i~~v~~~~~~~~l~s~-s~dg~i~iwd~~--~~~~~~-----~~---- 316 (394)
. ....|.+|++.... +. ..+. ........+.|+|+++++... -.+++|.++++. ...... ..
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 241 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF 241 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence 4 34589999987654 32 2222 234567889999999987554 567889999876 221110 01
Q ss_pred cCCCCEEEEEEeCCCCEEEEEe-CCCeEEEEECC--CCeE--EEEeecccCceeEEEEccCCCEEEEEe-CCCcEEEEec
Q 016187 317 DHEDGVTCLMWLGTSKYVVTGC-VDGKVRVWDSL--SGDC--VRTFSGHRDAIQAISVSAHQDFLVSVS-LDGTARVFEI 390 (394)
Q Consensus 317 ~~~~~v~~~~~~~~~~~l~sg~-~dg~i~iwd~~--~~~~--~~~~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iw~~ 390 (394)
........+.++|++++|.++. ....|.+|++. ++++ +..+......-..++++|++++|+.+. .++.|.+|++
T Consensus 242 ~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 242 TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence 1112577899999999988765 46789999983 3433 334443344468999999999999776 5679999987
Q ss_pred c
Q 016187 391 A 391 (394)
Q Consensus 391 ~ 391 (394)
+
T Consensus 322 d 322 (345)
T PF10282_consen 322 D 322 (345)
T ss_dssp E
T ss_pred e
Confidence 5
No 251
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.52 E-value=9.1e-10 Score=100.43 Aligned_cols=280 Identities=16% Similarity=0.190 Sum_probs=175.4
Q ss_pred CeEEEEEc--CCCeeeE--eecCcccCEEEEEEcCCCCEEEEEeC----CCcEEEEeCCC--Cce--EEEEecCCCCEEE
Q 016187 87 DKGFFWRI--NQGDWAS--EIQGHKDSVSSLAFSMDGQLLASGGL----DGLVQIWDPSS--GNL--KCTLEGPGGGVEW 154 (394)
Q Consensus 87 ~~v~~w~~--~~~~~~~--~~~~h~~~V~~v~~s~~g~~l~t~s~----d~~i~vwd~~~--~~~--~~~~~~~~~~v~~ 154 (394)
+.|.+|++ .++++.. .+. -......++++|++++|.++.. .+.|..|.+.. +.+ +............
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~ 91 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCH 91 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEE
T ss_pred CcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEE
Confidence 67777776 4444322 221 3345667899999999988876 46888887665 443 2333334455667
Q ss_pred EEEcCCCCEEEEec-CCCeEEEEeCCc-cceee---ee--c--------ccCcCeEEEEECCCCCeEEEEeC-CCcEEEE
Q 016187 155 VSWHPRGHIVLAGS-EDSTVWMWNADR-AAYLN---MF--S--------GHGSSVTCGDFTPDGKTICTGSD-DATLRVW 218 (394)
Q Consensus 155 ~~~~~~~~~l~~~s-~d~~i~iw~~~~-~~~~~---~~--~--------~h~~~v~~~~~~~~~~~l~s~~~-dg~i~vw 218 (394)
++++|++++|+++. .++.+.++++.. +.... .+ . .......++.|+|+|+++++... ...|.+|
T Consensus 92 i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~ 171 (345)
T PF10282_consen 92 IAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVY 171 (345)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred EEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEE
Confidence 99999999887775 589999999875 22211 11 1 12344678999999998877643 3568999
Q ss_pred cCCCCce-E---EEEcCCCCcccCeEEEEEcCCCCEEEEE-eCCCcEEEEECC--CCc--EEEEecc------CCCCEEE
Q 016187 219 NPKSGEN-I---HVIRGHPYHTEGLTCLTISADSTLALSG-SKDGSVHMVNIT--TGK--VVSSLVS------HTDSIEC 283 (394)
Q Consensus 219 d~~~~~~-~---~~~~~~~~~~~~i~~~~~~~~~~~l~~g-~~dg~i~i~d~~--~~~--~~~~~~~------h~~~i~~ 283 (394)
++..... + ..+.. ....+.+.+.|+|+++++++. -.+++|.++++. +++ .+..+.. .......
T Consensus 172 ~~~~~~~~l~~~~~~~~--~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 249 (345)
T PF10282_consen 172 DIDDDTGKLTPVDSIKV--PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAE 249 (345)
T ss_dssp EE-TTS-TEEEEEEEEC--STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEE
T ss_pred EEeCCCceEEEeecccc--ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCcee
Confidence 8866541 2 22222 134568899999999877554 567889999987 443 2222211 1225788
Q ss_pred EEECCCCCeEEEEe-CCCcEEEEeCCCC--Ccce--ec-cCCCCEEEEEEeCCCCEEEEEe-CCCeEEEEEC--CCCeEE
Q 016187 284 IGFSRSSPWAATGS-MDQKLIIWDLQHS--LPRS--TC-DHEDGVTCLMWLGTSKYVVTGC-VDGKVRVWDS--LSGDCV 354 (394)
Q Consensus 284 v~~~~~~~~l~s~s-~dg~i~iwd~~~~--~~~~--~~-~~~~~v~~~~~~~~~~~l~sg~-~dg~i~iwd~--~~~~~~ 354 (394)
++++|++++|.++. ..+.|.+|++... .... .. ........++++|++++|+++. .++.|.+|++ .+|.+.
T Consensus 250 i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~ 329 (345)
T PF10282_consen 250 IAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLT 329 (345)
T ss_dssp EEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred EEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEE
Confidence 99999999877665 4678999998432 2211 11 1233478899999999999886 5678999864 677654
Q ss_pred EEee-cccCceeEEEE
Q 016187 355 RTFS-GHRDAIQAISV 369 (394)
Q Consensus 355 ~~~~-~h~~~v~~l~~ 369 (394)
..-. ..-....||.|
T Consensus 330 ~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 330 PVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEEEEESSSEEEEEE
T ss_pred EecccccCCCCEEEeC
Confidence 4322 11223346655
No 252
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=2.2e-11 Score=114.88 Aligned_cols=233 Identities=15% Similarity=0.083 Sum_probs=149.4
Q ss_pred cEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCC---CeEEEEeCCccceeeeecccCcCeEEEEECCCCCeE
Q 016187 130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED---STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI 206 (394)
Q Consensus 130 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 206 (394)
.|.++|...++. ..+..+...+...+|+|+++.|+..+.+ ..|++|++.+++.... ..........+|+|+|+.|
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l-~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI-TNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc-cCCCCCcCCeEECCCCCEE
Confidence 477788775544 3444566778899999999988766543 4689999987754332 2223334467899999988
Q ss_pred E-EEeCCC--cEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCcEEEEeccCCCC
Q 016187 207 C-TGSDDA--TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK-DG--SVHMVNITTGKVVSSLVSHTDS 280 (394)
Q Consensus 207 ~-s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~-dg--~i~i~d~~~~~~~~~~~~h~~~ 280 (394)
+ +.+.+| .|.+||+.+++.. .+... ........|+|+++.++..+. ++ .|.++++.+++... +......
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~-~lt~~---~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~ 332 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLS-RVTNH---PAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNY 332 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeE-EcccC---CCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCC
Confidence 6 454555 5888899877643 33322 223445689999987766553 33 57778887776432 2212223
Q ss_pred EEEEEECCCCCeEEEEeCC-C--cEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCC---CeEEEEECCCCeEE
Q 016187 281 IECIGFSRSSPWAATGSMD-Q--KLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVD---GKVRVWDSLSGDCV 354 (394)
Q Consensus 281 i~~v~~~~~~~~l~s~s~d-g--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d---g~i~iwd~~~~~~~ 354 (394)
.....|+|++.+++..+.. + .|.+||+.+...+... .........|+|++++++..+.+ ..|++++.. +...
T Consensus 333 ~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~ 410 (430)
T PRK00178 333 NARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVR 410 (430)
T ss_pred ccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEcc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCce
Confidence 3456899999998877653 3 4778898765443322 12122245799999998876643 347777764 4445
Q ss_pred EEeecccCceeEEEEcc
Q 016187 355 RTFSGHRDAIQAISVSA 371 (394)
Q Consensus 355 ~~~~~h~~~v~~l~~~~ 371 (394)
+.+..+.+.+...+|+|
T Consensus 411 ~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 411 LPLPTAQGEVREPSWSP 427 (430)
T ss_pred EECcCCCCCcCCCccCC
Confidence 55665556677777776
No 253
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.52 E-value=3.1e-12 Score=108.67 Aligned_cols=246 Identities=17% Similarity=0.255 Sum_probs=173.7
Q ss_pred ceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEc-CCCeee-EeecCcccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 016187 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRI-NQGDWA-SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQI 133 (394)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~-~~~~~~-~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~v 133 (394)
..+.+.||.+.|++...-|.+.. +.+.+.|.+++||-- ..++.- .....-..+++++.+.++...|+.|-..|++.-
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~g-v~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEEG-VISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTE 94 (404)
T ss_pred hhhhhcCchhhhhhheeccCCCC-eEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEE
Confidence 35567899999999988886654 568899999999963 444432 233334678999999999999999999999988
Q ss_pred EeCC----CCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEE
Q 016187 134 WDPS----SGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTG 209 (394)
Q Consensus 134 wd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 209 (394)
+.+. ..........|...+..+-|+.....+++.+.|..+.---.+.+..+..+.- ....++..|.- .+...|
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~--~~~fvG 171 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDA--LYAFVG 171 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceee--EEEEec
Confidence 7543 3334445567888999999998888999999888765433443332211110 00111111111 134445
Q ss_pred eCCCcEEEEcCC--CCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-EEEEeccCCCCEEEEEE
Q 016187 210 SDDATLRVWNPK--SGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK-VVSSLVSHTDSIECIGF 286 (394)
Q Consensus 210 ~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~-~~~~~~~h~~~i~~v~~ 286 (394)
...|.|.+-.+. .-..+..+.+ |...+++++|.|...++++|..|..+.+||+.-.+ ....+++|...|..+..
T Consensus 172 d~~gqvt~lr~~~~~~~~i~~~~~---h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~ 248 (404)
T KOG1409|consen 172 DHSGQITMLKLEQNGCQLITTFNG---HTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSY 248 (404)
T ss_pred ccccceEEEEEeecCCceEEEEcC---cccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhh
Confidence 555555444332 2233444444 67789999999999999999999999999997554 34567789999998888
Q ss_pred CCCCCeEEEEeCCCcEEEEeCC
Q 016187 287 SRSSPWAATGSMDQKLIIWDLQ 308 (394)
Q Consensus 287 ~~~~~~l~s~s~dg~i~iwd~~ 308 (394)
-+.-..+.+++.||.|.+|++.
T Consensus 249 ~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 249 AQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred hhhheeeeeccCCCeEEEEecc
Confidence 8888889999999999999974
No 254
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=2.2e-11 Score=114.67 Aligned_cols=233 Identities=16% Similarity=0.136 Sum_probs=143.8
Q ss_pred eEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCC-C--cEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEE
Q 016187 88 KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD-G--LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIV 164 (394)
Q Consensus 88 ~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d-~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 164 (394)
.+.++|....+. ..+..+...+.+..|||||++|+..+.+ + .|.+||+.+++... +....+.....+|+|+++.|
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEE
Confidence 566667655443 3455567789999999999998866543 2 58889998876532 22222334467999999976
Q ss_pred EE-ecCCCe--EEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeC-CC--cEEEEcCCCCceEEEEcCCCCcccC
Q 016187 165 LA-GSEDST--VWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-DA--TLRVWNPKSGENIHVIRGHPYHTEG 238 (394)
Q Consensus 165 ~~-~s~d~~--i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~ 238 (394)
+. .+.++. |+++++.+++..+ +..+.......+|+|||+.|+..+. ++ .|.++|+.+++... +... ...
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~~~-lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~---g~~ 351 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKALTR-ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFE---GEQ 351 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecC---CCC
Confidence 54 555664 7778887766433 3445455567889999998876553 34 46666777665432 2211 112
Q ss_pred eEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeC-CCc--EEEEeCCCCCc
Q 016187 239 LTCLTISADSTLALSGSK-DG--SVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSM-DQK--LIIWDLQHSLP 312 (394)
Q Consensus 239 i~~~~~~~~~~~l~~g~~-dg--~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~-dg~--i~iwd~~~~~~ 312 (394)
.....|+|+|++++..+. ++ .|.++|+.+++.. .+... .......|+|+++.++..+. ++. +.+++......
T Consensus 352 ~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~ 429 (448)
T PRK04792 352 NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFK 429 (448)
T ss_pred CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 234689999998876654 34 4566788877643 23222 12234579999998776554 333 56667654433
Q ss_pred ceeccCCCCEEEEEEeC
Q 016187 313 RSTCDHEDGVTCLMWLG 329 (394)
Q Consensus 313 ~~~~~~~~~v~~~~~~~ 329 (394)
.....+...+...+|+|
T Consensus 430 ~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 430 ARLPAGQGEVKSPAWSP 446 (448)
T ss_pred EECcCCCCCcCCCccCC
Confidence 33333334455566665
No 255
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=2.7e-11 Score=113.14 Aligned_cols=298 Identities=17% Similarity=0.259 Sum_probs=197.6
Q ss_pred CceeeeeccCCcEEEEEEcCCC-----------CcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcC---CC-
Q 016187 55 DSTHIFSGHSDEVYSVACSPTD-----------ATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSM---DG- 119 (394)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~p~~-----------~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~---~g- 119 (394)
+-.+.+..|...|+.+.|.|.. .-+||++...|.|-+||+..+..+..+..|.++|..++|-+ +.
T Consensus 46 q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Sr 125 (1062)
T KOG1912|consen 46 QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSR 125 (1062)
T ss_pred hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcch
Confidence 4456677899999999998731 23678888999999999999888888999999999999975 33
Q ss_pred CEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCC-CEEEEecCCCeEEEEe---------------------
Q 016187 120 QLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRG-HIVLAGSEDSTVWMWN--------------------- 177 (394)
Q Consensus 120 ~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~d~~i~iw~--------------------- 177 (394)
..|+.-....+|.+|+..+|+...+.........++.+.|-+ ..+..-+..|.+.+-+
T Consensus 126 d~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~S 205 (1062)
T KOG1912|consen 126 DVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHS 205 (1062)
T ss_pred heeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCcc
Confidence 456666677899999999998766555444555555555522 2222222223333222
Q ss_pred -----------------------------------------------------CCccceeeeecccCcCeEEEEECCCC-
Q 016187 178 -----------------------------------------------------ADRAAYLNMFSGHGSSVTCGDFTPDG- 203 (394)
Q Consensus 178 -----------------------------------------------------~~~~~~~~~~~~h~~~v~~~~~~~~~- 203 (394)
++-..++....-..+.+.-+.+-|++
T Consensus 206 dl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~ 285 (1062)
T KOG1912|consen 206 DLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPR 285 (1062)
T ss_pred chhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCC
Confidence 21111111111222223345666654
Q ss_pred -CeEEEEeCCCcEEEEcCCC----------------CceEEEEcCC----------------------------------
Q 016187 204 -KTICTGSDDATLRVWNPKS----------------GENIHVIRGH---------------------------------- 232 (394)
Q Consensus 204 -~~l~s~~~dg~i~vwd~~~----------------~~~~~~~~~~---------------------------------- 232 (394)
..|+....||.+.+|-.+. +.+.+.++..
T Consensus 286 rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~ 365 (1062)
T KOG1912|consen 286 RDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSN 365 (1062)
T ss_pred cceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhc
Confidence 4688889999999996543 2222211100
Q ss_pred --------------------------------------CCcccCeEEEEEcC-----------CC-------CEEEEEeC
Q 016187 233 --------------------------------------PYHTEGLTCLTISA-----------DS-------TLALSGSK 256 (394)
Q Consensus 233 --------------------------------------~~~~~~i~~~~~~~-----------~~-------~~l~~g~~ 256 (394)
..|..+.++....| .+ .+++.|..
T Consensus 366 ~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~ 445 (1062)
T KOG1912|consen 366 GRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTN 445 (1062)
T ss_pred CCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecC
Confidence 00122222222221 11 26788999
Q ss_pred CCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEE---------EEeCCCcEEEEeCCCCCcceec----cCCCCEE
Q 016187 257 DGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAA---------TGSMDQKLIIWDLQHSLPRSTC----DHEDGVT 323 (394)
Q Consensus 257 dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~---------s~s~dg~i~iwd~~~~~~~~~~----~~~~~v~ 323 (394)
.|+|.++|+.++.+...+..|+..|.++.|-....++- +++.-+.+.+-|++++..+... ..+.+|.
T Consensus 446 sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~ 525 (1062)
T KOG1912|consen 446 SGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIR 525 (1062)
T ss_pred CceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcce
Confidence 99999999999999889999999999999987766542 2333345777888877555443 2345789
Q ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCCCe
Q 016187 324 CLMWLGTSKYVVTGCVDGKVRVWDSLSGD 352 (394)
Q Consensus 324 ~~~~~~~~~~l~sg~~dg~i~iwd~~~~~ 352 (394)
.+.-+..++||+..-.+.-+.+||+++..
T Consensus 526 ~irvS~~~~yLai~Fr~~plEiwd~kt~~ 554 (1062)
T KOG1912|consen 526 AIRVSSSGRYLAILFRREPLEIWDLKTLR 554 (1062)
T ss_pred eeeecccCceEEEEecccchHHHhhccch
Confidence 99999999999999999999999986543
No 256
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.50 E-value=7.4e-10 Score=98.92 Aligned_cols=256 Identities=17% Similarity=0.117 Sum_probs=164.8
Q ss_pred CcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecC----------CCeEEEEeCCccceeeeeccc-------C
Q 016187 129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE----------DSTVWMWNADRAAYLNMFSGH-------G 191 (394)
Q Consensus 129 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~----------d~~i~iw~~~~~~~~~~~~~h-------~ 191 (394)
++|.+.|..+++.+.++.....+-- + ++|+++.++.+.. +..|.+||..+.+.+..+..- .
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 7899999999999888775443332 4 9999997766555 789999999999888766532 1
Q ss_pred cCeEEEEECCCCCeEEEEe-C-CCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-C
Q 016187 192 SSVTCGDFTPDGKTICTGS-D-DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT-G 268 (394)
Q Consensus 192 ~~v~~~~~~~~~~~l~s~~-~-dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~-~ 268 (394)
......+++|||++|+... . +..|-+.|+.+++.+..+... . ...+-..++..++ +-+.||......+.. |
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp----~-~~~vy~t~e~~~~-~~~~Dg~~~~v~~d~~g 178 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP----D-CYHIFPTANDTFF-MHCRDGSLAKVGYGTKG 178 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC----C-CcEEEEecCCccE-EEeecCceEEEEecCCC
Confidence 2233678999999998765 3 789999999999887776531 1 1111112222222 122344444433321 2
Q ss_pred cEE-EEec-cCC--CCEEEE-EECC-CCCeEEEEeCCCcEEEEeCCCCC-----cceec--------cCCCCEEEEEEeC
Q 016187 269 KVV-SSLV-SHT--DSIECI-GFSR-SSPWAATGSMDQKLIIWDLQHSL-----PRSTC--------DHEDGVTCLMWLG 329 (394)
Q Consensus 269 ~~~-~~~~-~h~--~~i~~v-~~~~-~~~~l~s~s~dg~i~iwd~~~~~-----~~~~~--------~~~~~v~~~~~~~ 329 (394)
+.. .+.. -+. .++..- .|.+ ++.++..... |+|.+.|+.... ..... -....+.-+++++
T Consensus 179 ~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~ 257 (352)
T TIGR02658 179 NPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR 257 (352)
T ss_pred ceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC
Confidence 211 1100 011 111000 3344 7777766665 999999964321 11111 1233445589999
Q ss_pred CCCEEEEEe----------CCCeEEEEECCCCeEEEEeecccCceeEEEEccCCC-EEEEEe-CCCcEEEEeccCCC
Q 016187 330 TSKYVVTGC----------VDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQD-FLVSVS-LDGTARVFEIADFK 394 (394)
Q Consensus 330 ~~~~l~sg~----------~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s-~dg~i~iw~~~~~~ 394 (394)
+++++.... ..+.|.++|..+++.+..+.- ...+..++++||++ +|++.. .++.|.++|....|
T Consensus 258 dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 258 ARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred CCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence 999888743 225799999999999998874 44789999999999 777555 67889999987653
No 257
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.49 E-value=4e-11 Score=107.01 Aligned_cols=294 Identities=16% Similarity=0.201 Sum_probs=201.1
Q ss_pred EEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEec
Q 016187 89 GFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS 168 (394)
Q Consensus 89 v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s 168 (394)
-.+|+..+...-..+..-.-++..++|||.|.+|++.... .|.+|.-..+..+..+. ...|..+.|+|.+++|.+=+
T Consensus 14 ~~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~ 90 (561)
T COG5354 14 SVFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWS 90 (561)
T ss_pred EEeecCccccccccccccCcchhheeecCcchheehhhcc-ceEEccccchhheeeee--cCCceecccCcccceeeeec
Confidence 3467766655545555566789999999999999877654 59999988777554444 34688999999999998855
Q ss_pred CCC---------------eEEEEeCCccceeeeecccCcC--eE-EEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEc
Q 016187 169 EDS---------------TVWMWNADRAAYLNMFSGHGSS--VT-CGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230 (394)
Q Consensus 169 ~d~---------------~i~iw~~~~~~~~~~~~~h~~~--v~-~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 230 (394)
... .+.+||..++..+..+.+-..+ .. -+.|+.+.+++|=- ....+.|+++ ++. +....
T Consensus 91 ~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n-~~~~p 167 (561)
T COG5354 91 REPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDN-IEEHP 167 (561)
T ss_pred cCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCc-cccCc
Confidence 433 4899999999988887766554 33 56888888776644 3356899997 322 11111
Q ss_pred CCCCcccCeEEEEEcCCCC--EEEE-----EeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEe------
Q 016187 231 GHPYHTEGLTCLTISADST--LALS-----GSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGS------ 297 (394)
Q Consensus 231 ~~~~~~~~i~~~~~~~~~~--~l~~-----g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s------ 297 (394)
.+.....++....++|.+. .++. .+..+.+++|.+..++.+.+-.-....=-.+.|.+.+.+|+.--
T Consensus 168 ~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ks 247 (561)
T COG5354 168 FKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKS 247 (561)
T ss_pred hhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeec
Confidence 1112235678888888743 2222 56778999999987776654322222223567788887765321
Q ss_pred -----CCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEE--EeCCCeEEEEECCCCeEEEEeecccCceeEEEEc
Q 016187 298 -----MDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVT--GCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVS 370 (394)
Q Consensus 298 -----~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s--g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~ 370 (394)
....+.|++++...++......++|...+|.|.++.+++ |-....+.++|++.. .. +..-.+.=+.+.|+
T Consensus 248 nKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~--~~~Pe~~rNT~~fs 324 (561)
T COG5354 248 NKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LR--FYFPEQKRNTIFFS 324 (561)
T ss_pred ccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eE--EecCCccccccccc
Confidence 124688888886655555466788999999998876554 457889999998754 33 23333444678899
Q ss_pred cCCCEEEEEeCC---CcEEEEecc
Q 016187 371 AHQDFLVSVSLD---GTARVFEIA 391 (394)
Q Consensus 371 ~~~~~l~s~s~d---g~i~iw~~~ 391 (394)
|.+++++.++-| |.|-+|+..
T Consensus 325 p~~r~il~agF~nl~gni~i~~~~ 348 (561)
T COG5354 325 PHERYILFAGFDNLQGNIEIFDPA 348 (561)
T ss_pred CcccEEEEecCCccccceEEeccC
Confidence 999999998765 678888854
No 258
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.49 E-value=1.2e-11 Score=105.12 Aligned_cols=241 Identities=17% Similarity=0.303 Sum_probs=168.6
Q ss_pred CCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccc-----eeeeecccCc------------CeEEEEECCCCC--eEEEE
Q 016187 149 GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-----YLNMFSGHGS------------SVTCGDFTPDGK--TICTG 209 (394)
Q Consensus 149 ~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~-----~~~~~~~h~~------------~v~~~~~~~~~~--~l~s~ 209 (394)
.+-+.++.|...|.+|++|..+|.+.++.-.... ....++.|.. .|..+.|.++++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 3457889999999999999999999999754322 2333444432 466788887654 57777
Q ss_pred eCCCcEEEEcCCCCce--------------------EEEEcC-------------CCCcccCeEEEEEcCCCCEEEEEeC
Q 016187 210 SDDATLRVWNPKSGEN--------------------IHVIRG-------------HPYHTEGLTCLTISADSTLALSGSK 256 (394)
Q Consensus 210 ~~dg~i~vwd~~~~~~--------------------~~~~~~-------------~~~~~~~i~~~~~~~~~~~l~~g~~ 256 (394)
+.|++|++|.+..... +..+.. ...|...|++++++.|+..++++ .
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-D 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-D 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-c
Confidence 8899999998753211 001110 12356668999999999888765 5
Q ss_pred CCcEEEEECCCCc---EEEEeccC-----CCCEEEEEECCC-CCeEEEEeCCCcEEEEeCCCCCc-ce---ec-------
Q 016187 257 DGSVHMVNITTGK---VVSSLVSH-----TDSIECIGFSRS-SPWAATGSMDQKLIIWDLQHSLP-RS---TC------- 316 (394)
Q Consensus 257 dg~i~i~d~~~~~---~~~~~~~h-----~~~i~~v~~~~~-~~~l~s~s~dg~i~iwd~~~~~~-~~---~~------- 316 (394)
|=.|.+|++.--. .+..++.+ +.-|++..|+|. ...++..+..|+|+|.|++.... -. ..
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 7789999986322 12222322 345888899986 56788889999999999974311 00 00
Q ss_pred ------cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC-CCCeEEEEeeccc------------Cce---eEEEEccCCC
Q 016187 317 ------DHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDS-LSGDCVRTFSGHR------------DAI---QAISVSAHQD 374 (394)
Q Consensus 317 ------~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~-~~~~~~~~~~~h~------------~~v---~~l~~~~~~~ 374 (394)
.--..|..+.|++.|+|+++-.. -+|++||+ ...+.+..+.-|. ..| ..++|+.++.
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~ 342 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDS 342 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcc
Confidence 01124677899999999987542 58999998 5667777777663 233 3578888999
Q ss_pred EEEEEeCCCcEEEEecc
Q 016187 375 FLVSVSLDGTARVFEIA 391 (394)
Q Consensus 375 ~l~s~s~dg~i~iw~~~ 391 (394)
+++|||.....++|+++
T Consensus 343 ~v~TGsy~n~frvf~~~ 359 (433)
T KOG1354|consen 343 YVMTGSYNNVFRVFNLA 359 (433)
T ss_pred eEecccccceEEEecCC
Confidence 99999999999999855
No 259
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.48 E-value=4.9e-13 Score=134.33 Aligned_cols=189 Identities=18% Similarity=0.293 Sum_probs=154.8
Q ss_pred cCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 016187 190 HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGK 269 (394)
Q Consensus 190 h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~ 269 (394)
+-..|.++.=+|...+-+||+.||.|++|....++.+..++.. ....++.+.|+.+|+.+..+..||.|.+|... .+
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~--g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk 2283 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA--GNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PK 2283 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc--CcchhhhhhhcccCCceeeeccCCceeecccC-Cc
Confidence 4456677777888888999999999999999888888877643 23678888999999999999999999999986 66
Q ss_pred EEEEeccCCCCEEEEEECCCCCeEEEEe---CCCcEEEEeCCCC--CcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEE
Q 016187 270 VVSSLVSHTDSIECIGFSRSSPWAATGS---MDQKLIIWDLQHS--LPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVR 344 (394)
Q Consensus 270 ~~~~~~~h~~~i~~v~~~~~~~~l~s~s---~dg~i~iwd~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~ 344 (394)
+....+.|......+.|-. ..+++++ .++.+.+||.... .......|..+++++++.|..+.|++|+.+|.|+
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~ 2361 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVC 2361 (2439)
T ss_pred ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEE
Confidence 7778888998888888875 4566553 4678999996432 1122256889999999999999999999999999
Q ss_pred EEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 345 VWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 345 iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
+||++..++++.+.. +. ...++++|+..|.|+||++..|
T Consensus 2362 l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2362 LFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred EeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEcccc
Confidence 999998888876664 33 5689999999999999998865
No 260
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=3.5e-11 Score=113.34 Aligned_cols=233 Identities=15% Similarity=0.089 Sum_probs=146.2
Q ss_pred cEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecC-C--CeEEEEeCCccceeeeecccCcCeEEEEECCCCCeE
Q 016187 130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-D--STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI 206 (394)
Q Consensus 130 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~-d--~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 206 (394)
.|.++|....+. ..+......+....|+|+|+.|+..+. + ..|++||+.+++.... ..........+|+|||+.|
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCEE
Confidence 567778655443 344445667888999999998876543 2 3688899887654322 1112223457899999987
Q ss_pred EE-EeCCCc--EEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCcEEEEeccCCCC
Q 016187 207 CT-GSDDAT--LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK-DG--SVHMVNITTGKVVSSLVSHTDS 280 (394)
Q Consensus 207 ~s-~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~-dg--~i~i~d~~~~~~~~~~~~h~~~ 280 (394)
+. .+.+|. |.++|+.+++.. .+.. +........|+|+++.++..+. ++ .|.++|+.+++... +......
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~~-~lt~---~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~ 351 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKALT-RITR---HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQ 351 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCeE-ECcc---CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCC
Confidence 64 556665 777788776543 3322 1223456789999997766543 33 46777887776432 2222222
Q ss_pred EEEEEECCCCCeEEEEeC-CCc--EEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCC-C--eEEEEECCCCeEE
Q 016187 281 IECIGFSRSSPWAATGSM-DQK--LIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVD-G--KVRVWDSLSGDCV 354 (394)
Q Consensus 281 i~~v~~~~~~~~l~s~s~-dg~--i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d-g--~i~iwd~~~~~~~ 354 (394)
.....|+|++++++..+. ++. |.++|+.+......... .......|+|++++|+..+.+ | .+++++. +|+..
T Consensus 352 ~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~ 429 (448)
T PRK04792 352 NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFK 429 (448)
T ss_pred CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCce
Confidence 345689999998877655 343 45567766543322211 111234799999988765543 3 3777776 67777
Q ss_pred EEeecccCceeEEEEcc
Q 016187 355 RTFSGHRDAIQAISVSA 371 (394)
Q Consensus 355 ~~~~~h~~~v~~l~~~~ 371 (394)
+.+..+.+.+...+|+|
T Consensus 430 ~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 430 ARLPAGQGEVKSPAWSP 446 (448)
T ss_pred EECcCCCCCcCCCccCC
Confidence 77777666777788876
No 261
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=5.9e-11 Score=110.93 Aligned_cols=238 Identities=12% Similarity=0.093 Sum_probs=142.7
Q ss_pred CeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEE---EEEeCCC--cEEEEeCCCCceEEEEecCCCCEEEEEEcCCC
Q 016187 87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLL---ASGGLDG--LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRG 161 (394)
Q Consensus 87 ~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l---~t~s~d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (394)
..+++.|...++. ..+......+.+-.|||||+.+ ++...++ .|.+.++.+++... +....+.....+|+|+|
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCC
Confidence 3566666655443 3344455667788999999752 2443443 57777888776443 22233445568999999
Q ss_pred CEEEEecC-CC----eEEEEeCCc---cceeeeecccCcCeEEEEECCCCCeEEEEe-CCCcEEEEc--CCC-CceEEEE
Q 016187 162 HIVLAGSE-DS----TVWMWNADR---AAYLNMFSGHGSSVTCGDFTPDGKTICTGS-DDATLRVWN--PKS-GENIHVI 229 (394)
Q Consensus 162 ~~l~~~s~-d~----~i~iw~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd--~~~-~~~~~~~ 229 (394)
+.|+..+. ++ .+..|++.. ++..+...++.......+|+|||+.|+..+ .+|..++|. +.. +.....+
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l 322 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL 322 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe
Confidence 87765442 23 334466654 232233323323345678999999887655 467666664 321 2223333
Q ss_pred cCCCCcccCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeC---CCcEE
Q 016187 230 RGHPYHTEGLTCLTISADSTLALSGSKD---GSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSM---DQKLI 303 (394)
Q Consensus 230 ~~~~~~~~~i~~~~~~~~~~~l~~g~~d---g~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~---dg~i~ 303 (394)
.. ....+....|+|+|+.++..+.+ ..|.+||+.+++.. .+......+....|+|++++|+.... ...|.
T Consensus 323 t~---~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~ 398 (428)
T PRK01029 323 TK---KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSLHLVYSAGNSNESELY 398 (428)
T ss_pred cc---CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence 22 12345678899999988766543 46999999888754 33333345677899999998775433 34577
Q ss_pred EEeCCCCCcceeccCCCCEEEEEEeCC
Q 016187 304 IWDLQHSLPRSTCDHEDGVTCLMWLGT 330 (394)
Q Consensus 304 iwd~~~~~~~~~~~~~~~v~~~~~~~~ 330 (394)
++|+..............+...+|+|.
T Consensus 399 ~vdl~~g~~~~Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 399 LISLITKKTRKIVIGSGEKRFPSWGAF 425 (428)
T ss_pred EEECCCCCEEEeecCCCcccCceecCC
Confidence 888876554433333334555666654
No 262
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=3.2e-13 Score=121.33 Aligned_cols=281 Identities=17% Similarity=0.248 Sum_probs=191.1
Q ss_pred ceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCC-------CeeeEeecCcccCEEEEEEcCCCCEEEEEeCC
Q 016187 56 STHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ-------GDWASEIQGHKDSVSSLAFSMDGQLLASGGLD 128 (394)
Q Consensus 56 ~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~-------~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d 128 (394)
..+.|.||+..|..++.-.+ .+-+++++.|++|++|.+.. ..+..+++.|+.+|..+.|-.+-++++++ |
T Consensus 727 rL~nf~GH~~~iRai~AidN-ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D 803 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDN-ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--D 803 (1034)
T ss_pred eeecccCcHHHhHHHHhccc-ccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--c
Confidence 35568899999988875443 44577899999999999753 23556789999999999999998888655 8
Q ss_pred CcEEEEeCCCCceEEEEec--CCCCEEEEEEcC--CCCEEEE-ecCCCeEEEEeCCccceeeee-----cccCcCeEEEE
Q 016187 129 GLVQIWDPSSGNLKCTLEG--PGGGVEWVSWHP--RGHIVLA-GSEDSTVWMWNADRAAYLNMF-----SGHGSSVTCGD 198 (394)
Q Consensus 129 ~~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~--~~~~l~~-~s~d~~i~iw~~~~~~~~~~~-----~~h~~~v~~~~ 198 (394)
+-|++||.--|+.+..+.. ..+.+.-+..-+ +.+++++ ++...+++++|.+.......+ .+...-+.+++
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 9999999887776653321 122233333333 3444444 478999999999887655444 34456688999
Q ss_pred ECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEE-EECCCCcEEEEeccC
Q 016187 199 FTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM-VNITTGKVVSSLVSH 277 (394)
Q Consensus 199 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i-~d~~~~~~~~~~~~h 277 (394)
..+.|+.++.+-..|.|.+.|.++|+.+..++.... ....++ .|..+.++....|.++.+ |....+....+....
T Consensus 884 Va~~GN~lAa~LSnGci~~LDaR~G~vINswrpmec---dllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpp 959 (1034)
T KOG4190|consen 884 VADKGNKLAAALSNGCIAILDARNGKVINSWRPMEC---DLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPP 959 (1034)
T ss_pred eccCcchhhHHhcCCcEEEEecCCCceeccCCcccc---hhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCC
Confidence 999999999999999999999999998776664321 111222 355667777778899988 887766554444332
Q ss_pred CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC-C------CcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 016187 278 TDSIECIGFSRSSPWAATGSMDQKLIIWDLQH-S------LPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRV 345 (394)
Q Consensus 278 ~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~-~------~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~i 345 (394)
..+..-+ -.-|+-|+++.....+.+|.-.. . .....-...+..++++-.|-+.-+.+|...|.|.+
T Consensus 960 pepahfl--qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 960 PEPAHFL--QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred Ccchhhh--hccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 2222111 12256688888778888884211 0 00111123455677777787777778888888875
No 263
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.47 E-value=1.6e-11 Score=111.40 Aligned_cols=189 Identities=17% Similarity=0.299 Sum_probs=148.8
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCceEEEEec---CCCCEEEEEEc------C--------------CCCEEEEecCCCe
Q 016187 116 SMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG---PGGGVEWVSWH------P--------------RGHIVLAGSEDST 172 (394)
Q Consensus 116 s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~---~~~~v~~~~~~------~--------------~~~~l~~~s~d~~ 172 (394)
.|-+.++|....||.+++|++.++++...+.. -.+...+..|. | +...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 35567999999999999999998887655532 22344444443 2 1235777888999
Q ss_pred EEEEeCCccceeeeec--ccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCE
Q 016187 173 VWMWNADRAAYLNMFS--GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTL 250 (394)
Q Consensus 173 i~iw~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 250 (394)
|.+|++..++....+. .|.+.|.++.++.+-..|.|++.|+.+..|+....+.+...+.. ...+.+++++||+..
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~---~~~~~sl~is~D~~~ 158 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQ---KPLVSSLCISPDGKI 158 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccC---CCccceEEEcCCCCE
Confidence 9999999888766654 68899999999999999999999999999999988877766643 445788999999999
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCC-----CCeEEEE-eCCCcEEEEeCCC
Q 016187 251 ALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRS-----SPWAATG-SMDQKLIIWDLQH 309 (394)
Q Consensus 251 l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~-----~~~l~s~-s~dg~i~iwd~~~ 309 (394)
+++++ +.|++||+.+++.+.++.+|.++|+++.|... |.+++++ ..+.-+.+|-+..
T Consensus 159 l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 159 LLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 98875 68999999999999999999999999999876 5665554 4455566776543
No 264
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.46 E-value=5.4e-13 Score=134.05 Aligned_cols=193 Identities=18% Similarity=0.329 Sum_probs=155.9
Q ss_pred ecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEec-CCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcc
Q 016187 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG-PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA 181 (394)
Q Consensus 103 ~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~ 181 (394)
++.|-..|.++.=+|...+.+||+.||.|++|....+..+..+.. ....|+.+.|+.+|+.+..+..||.+-+|... .
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-C
Confidence 444667899999899999999999999999999988887766542 23788999999999999999999999999988 4
Q ss_pred ceeeeecccCcCeEEEEECCCCCeEEEEe---CCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCC
Q 016187 182 AYLNMFSGHGSSVTCGDFTPDGKTICTGS---DDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG 258 (394)
Q Consensus 182 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg 258 (394)
+.....+.|........|-. ..+++++ .++.+.+||.........+ |..|..+.+++++.|..+++++|+.+|
T Consensus 2283 k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v--~~~H~~gaT~l~~~P~~qllisggr~G 2358 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLV--HTCHDGGATVLAYAPKHQLLISGGRKG 2358 (2439)
T ss_pred cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCccccee--eeecCCCceEEEEcCcceEEEecCCcC
Confidence 44556677888878777764 5566553 4688999997543322222 256889999999999999999999999
Q ss_pred cEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 016187 259 SVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHS 310 (394)
Q Consensus 259 ~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~ 310 (394)
.+++||++..++++.++. ++ ...++++|+..|.++||++...
T Consensus 2359 ~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2359 EVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred cEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEcccc
Confidence 999999999887766654 33 5678999999999999998754
No 265
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=8.9e-11 Score=109.75 Aligned_cols=238 Identities=15% Similarity=0.135 Sum_probs=145.8
Q ss_pred CcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCE--E-EEecCC--CeEEEEeCCccceeeeecccCcCeEEEEECCCC
Q 016187 129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHI--V-LAGSED--STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDG 203 (394)
Q Consensus 129 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l-~~~s~d--~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~ 203 (394)
..|.+.|...++.. .+.........-+|+|+|+. + ++...+ ..|++.++.+++..+.. .........+|+|||
T Consensus 165 ~~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-ALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee-cCCCCccceEECCCC
Confidence 35667776655443 34434455667799999874 2 244444 36777788766543322 223333457899999
Q ss_pred CeEEEEeC-----CCcEEEEcCCCC---ceEEEEcCCCCcccCeEEEEEcCCCCEEEEEe-CCCcEEEE--ECCC-CcEE
Q 016187 204 KTICTGSD-----DATLRVWNPKSG---ENIHVIRGHPYHTEGLTCLTISADSTLALSGS-KDGSVHMV--NITT-GKVV 271 (394)
Q Consensus 204 ~~l~s~~~-----dg~i~vwd~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~-~dg~i~i~--d~~~-~~~~ 271 (394)
+.|+..+. +..+.+|++..+ +........ .......+|+|||+.++..+ .+|...+| ++.. +...
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~---~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~ 319 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEA---FGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP 319 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCC---CCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce
Confidence 98876543 333455776643 222222211 11234578999999776554 46655554 4432 2333
Q ss_pred EEeccCCCCEEEEEECCCCCeEEEEeCC---CcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeC---CCeEEE
Q 016187 272 SSLVSHTDSIECIGFSRSSPWAATGSMD---QKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCV---DGKVRV 345 (394)
Q Consensus 272 ~~~~~h~~~i~~v~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~---dg~i~i 345 (394)
..+..+...+....|+|++++|+..+.+ ..|.+||+..............+....|+|++++|+..+. ...|++
T Consensus 320 ~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~ 399 (428)
T PRK01029 320 RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYL 399 (428)
T ss_pred EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEE
Confidence 4444445567788999999988876543 3689999987765544333335667899999998875433 356889
Q ss_pred EECCCCeEEEEeecccCceeEEEEccC
Q 016187 346 WDSLSGDCVRTFSGHRDAIQAISVSAH 372 (394)
Q Consensus 346 wd~~~~~~~~~~~~h~~~v~~l~~~~~ 372 (394)
+|+.+++...... ..+.+...+|+|-
T Consensus 400 vdl~~g~~~~Lt~-~~g~~~~p~Ws~~ 425 (428)
T PRK01029 400 ISLITKKTRKIVI-GSGEKRFPSWGAF 425 (428)
T ss_pred EECCCCCEEEeec-CCCcccCceecCC
Confidence 9988776544333 3455667778764
No 266
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.42 E-value=5.1e-09 Score=90.33 Aligned_cols=285 Identities=12% Similarity=0.138 Sum_probs=182.8
Q ss_pred CCeEEEEEcCCC--ee-eEeecCcccCEEEEEEcCCCCEEEEEeCC---CcEEEEeC--CCCceEE--EEecCCCCEEEE
Q 016187 86 DDKGFFWRINQG--DW-ASEIQGHKDSVSSLAFSMDGQLLASGGLD---GLVQIWDP--SSGNLKC--TLEGPGGGVEWV 155 (394)
Q Consensus 86 d~~v~~w~~~~~--~~-~~~~~~h~~~V~~v~~s~~g~~l~t~s~d---~~i~vwd~--~~~~~~~--~~~~~~~~v~~~ 155 (394)
+.-|++|++.+. +. ...+-.+...++-|+|+|++++|.++-.+ |.|..|.+ .+|++.. .......+...+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 677899998632 22 12334567788999999999999888655 56666554 4466532 222233445789
Q ss_pred EEcCCCCEEEEecC-CCeEEEEeCCc-ccee--eeecccCcC----------eEEEEECCCCCeEEEEeCC-CcEEEEcC
Q 016187 156 SWHPRGHIVLAGSE-DSTVWMWNADR-AAYL--NMFSGHGSS----------VTCGDFTPDGKTICTGSDD-ATLRVWNP 220 (394)
Q Consensus 156 ~~~~~~~~l~~~s~-d~~i~iw~~~~-~~~~--~~~~~h~~~----------v~~~~~~~~~~~l~s~~~d-g~i~vwd~ 220 (394)
+.++++++++++.. .|.|.++-++. +... .....|... +.+..|.|++++|++..-. -.|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999998888764 58899998854 2211 112234333 6778899999999887642 35889999
Q ss_pred CCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCC-cEEEEecc---------CCCCEEEEEECCC
Q 016187 221 KSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS-KDGSVHMVNITTG-KVVSSLVS---------HTDSIECIGFSRS 289 (394)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~-~dg~i~i~d~~~~-~~~~~~~~---------h~~~i~~v~~~~~ 289 (394)
..++....-...-....+.+.+.|+|+++++..-. .+++|.+|..... ..+..++. ...+..+|.++++
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 87653222111112345688999999999877654 6899999998763 33333332 2346778999999
Q ss_pred CCeEEEEeCC-CcEEEEeCCCCCc--c---eeccCCCCEEEEEEeCCCCEEEEEeCC-CeEEEEE--CCCCeEEEEee-c
Q 016187 290 SPWAATGSMD-QKLIIWDLQHSLP--R---STCDHEDGVTCLMWLGTSKYVVTGCVD-GKVRVWD--SLSGDCVRTFS-G 359 (394)
Q Consensus 290 ~~~l~s~s~d-g~i~iwd~~~~~~--~---~~~~~~~~v~~~~~~~~~~~l~sg~~d-g~i~iwd--~~~~~~~~~~~-~ 359 (394)
|++|..+... ..|.+|.+..... . ....+........+++.+++|+++..+ ..|.+|. -.+|++-.... .
T Consensus 255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~ 334 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYA 334 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEeccccc
Confidence 9999887543 3577776653311 1 111223335667788999999888765 4578875 45665543322 2
Q ss_pred ccCceeEEEEc
Q 016187 360 HRDAIQAISVS 370 (394)
Q Consensus 360 h~~~v~~l~~~ 370 (394)
....-.||.|.
T Consensus 335 ~~p~Pvcv~f~ 345 (346)
T COG2706 335 VVPEPVCVKFL 345 (346)
T ss_pred CCCCcEEEEEc
Confidence 22233466664
No 267
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=1.4e-10 Score=107.60 Aligned_cols=276 Identities=14% Similarity=0.163 Sum_probs=185.1
Q ss_pred CcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCe---------------eeEeecCcccCEEEEEEcCCCCEEEEEeCCC
Q 016187 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGD---------------WASEIQGHKDSVSSLAFSMDGQLLASGGLDG 129 (394)
Q Consensus 65 ~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~---------------~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~ 129 (394)
....|++|... ..++|.||.||.+++-.+.+.. .-+++.||++.|.-+.|+...+.|-|...+|
T Consensus 15 vkL~c~~WNke-~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 15 VKLHCAEWNKE-SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred ceEEEEEEccc-CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 45689999974 5689999999999999875431 2246899999999999999999999999999
Q ss_pred cEEEEeCCCCceEEEE--ecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcccee-eeecccCcCeEEEEECCCCCeE
Q 016187 130 LVQIWDPSSGNLKCTL--EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL-NMFSGHGSSVTCGDFTPDGKTI 206 (394)
Q Consensus 130 ~i~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l 206 (394)
-|.||-+-.|.+...+ ......|.+++|+.+|..++....||.|.+=.++....- +.+++ .....+.|++|.+.+
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~ 171 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQA 171 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccHHHH
Confidence 9999988777543222 224456889999999999999999999987666543321 11221 123357899999998
Q ss_pred EEEeCCCcEEEEcCCCCc-------eEEEEcC-CCCcccCeEEEE--------EcCCCCEEEEEeCCCcEEEEECCCCcE
Q 016187 207 CTGSDDATLRVWNPKSGE-------NIHVIRG-HPYHTEGLTCLT--------ISADSTLALSGSKDGSVHMVNITTGKV 270 (394)
Q Consensus 207 ~s~~~dg~i~vwd~~~~~-------~~~~~~~-~~~~~~~i~~~~--------~~~~~~~l~~g~~dg~i~i~d~~~~~~ 270 (394)
+.+-..|.+.++|...+- +.....+ .+.....+..+. ..|+...++++...|.+.+..-.+...
T Consensus 172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~ 251 (1189)
T KOG2041|consen 172 LFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE 251 (1189)
T ss_pred HhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC
Confidence 888899999999975431 1111111 000011122222 246888999999999988865433221
Q ss_pred EEEeccCCCCEEEEEECCCCCeEEEEeCCC---------cEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCC
Q 016187 271 VSSLVSHTDSIECIGFSRSSPWAATGSMDQ---------KLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDG 341 (394)
Q Consensus 271 ~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg---------~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg 341 (394)
..-+ .-.-.+..+.|+++|..||.++.+. .|.+|..-.............|+.+.|-..|-.++.+ .|+
T Consensus 252 Pvv~-dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~gLriA~A-vds 329 (1189)
T KOG2041|consen 252 PVVV-DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEGTGLRIAIA-VDS 329 (1189)
T ss_pred CeEE-ecccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEcCCceEEEEE-ecc
Confidence 1111 1124677889999999999987653 4555544333333333445668888887776555543 244
Q ss_pred eEEE
Q 016187 342 KVRV 345 (394)
Q Consensus 342 ~i~i 345 (394)
.|++
T Consensus 330 fiyf 333 (1189)
T KOG2041|consen 330 FIYF 333 (1189)
T ss_pred eEEE
Confidence 4444
No 268
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.40 E-value=6.8e-09 Score=104.97 Aligned_cols=279 Identities=14% Similarity=0.233 Sum_probs=182.1
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEE----eCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCC--
Q 016187 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIW----DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD-- 179 (394)
Q Consensus 106 h~~~V~~v~~s~~g~~l~t~s~d~~i~vw----d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~-- 179 (394)
..+.|.++.|-++...++.+..+|.|.+. +..+.... .+-.-..+|.+++|+||+.+|+..+.++++.+.+..
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E-~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd 152 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIE-IVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFD 152 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeE-EEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccce
Confidence 45789999999999999999999999998 55444332 122234679999999999999999988888765321
Q ss_pred -------------c--------cceeeeecc------------------------cCcCeEEEEECCCCCeEEEEeC---
Q 016187 180 -------------R--------AAYLNMFSG------------------------HGSSVTCGDFTPDGKTICTGSD--- 211 (394)
Q Consensus 180 -------------~--------~~~~~~~~~------------------------h~~~v~~~~~~~~~~~l~s~~~--- 211 (394)
. |+....|.| +...-..++|-.||+++|+.+.
T Consensus 153 ~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~ 232 (928)
T PF04762_consen 153 PISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPE 232 (928)
T ss_pred EEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcC
Confidence 0 111111111 1223346789999999998764
Q ss_pred C---CcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCcEEEEe----ccCCCCE
Q 016187 212 D---ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK---DGSVHMVNITTGKVVSSL----VSHTDSI 281 (394)
Q Consensus 212 d---g~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~---dg~i~i~d~~~~~~~~~~----~~h~~~i 281 (394)
. +.+|||+-. |.....-+.. .+--.+++|.|.|+++++... ...|.+|.- +|-....+ ......|
T Consensus 233 ~~~~R~iRVy~Re-G~L~stSE~v---~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v 307 (928)
T PF04762_consen 233 TGSRRVIRVYSRE-GELQSTSEPV---DGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKV 307 (928)
T ss_pred CCceeEEEEECCC-ceEEeccccC---CCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCcee
Confidence 2 579999954 5433222211 111236799999999988754 345666663 33322222 2345679
Q ss_pred EEEEECCCCCeEEEEeCCCcEEEEeCCCC--Ccc--eeccCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEE----CCCC-
Q 016187 282 ECIGFSRSSPWAATGSMDQKLIIWDLQHS--LPR--STCDHEDGVTCLMWLGTS-KYVVTGCVDGKVRVWD----SLSG- 351 (394)
Q Consensus 282 ~~v~~~~~~~~l~s~s~dg~i~iwd~~~~--~~~--~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~iwd----~~~~- 351 (394)
..+.|++++..||..-.|. |.+|-.... ..+ ..+.....+..+.|+|.. ..|...+.+|.+..++ +..+
T Consensus 308 ~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~ 386 (928)
T PF04762_consen 308 IELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSP 386 (928)
T ss_pred eEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecC
Confidence 9999999999999977555 999987653 111 112223345558899854 4466666667665543 2111
Q ss_pred -------eEEEEeec-----------------------ccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 352 -------DCVRTFSG-----------------------HRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 352 -------~~~~~~~~-----------------------h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
..+..+.| -..+|.+++|++++..++....||+|.+|.+.
T Consensus 387 ~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~ 456 (928)
T PF04762_consen 387 GSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWD 456 (928)
T ss_pred CCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEec
Confidence 11112221 24679999999999889999999999999854
No 269
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.40 E-value=1.2e-09 Score=112.47 Aligned_cols=240 Identities=15% Similarity=0.213 Sum_probs=163.6
Q ss_pred EEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecC--------------cccCEEEEEEcCCCCEEEEEe-CCCcEEE
Q 016187 69 SVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQG--------------HKDSVSSLAFSMDGQLLASGG-LDGLVQI 133 (394)
Q Consensus 69 ~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~--------------h~~~V~~v~~s~~g~~l~t~s-~d~~i~v 133 (394)
.+++++.++.++++-...++|++||.. ++.+..+.+ +-.....|+++++++.|+.+. ..+.|++
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 567777667777788888999999975 444433322 112357899999988766554 4578999
Q ss_pred EeCCCCceEEEEecC-----------------CCCEEEEEEcC-CCCEEEEecCCCeEEEEeCCccceeeeeccc-----
Q 016187 134 WDPSSGNLKCTLEGP-----------------GGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMFSGH----- 190 (394)
Q Consensus 134 wd~~~~~~~~~~~~~-----------------~~~v~~~~~~~-~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h----- 190 (394)
+|+.++... ++.+. -.....++++| ++.++++.+.++.|++|+..++... .+.+.
T Consensus 651 id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~ 728 (1057)
T PLN02919 651 IDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERN 728 (1057)
T ss_pred EecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCcccc
Confidence 998776543 22210 01235789999 5667778888899999998765432 11111
Q ss_pred ----------CcCeEEEEECCCCCeE-EEEeCCCcEEEEcCCCCceEEEEcCCC------------------CcccCeEE
Q 016187 191 ----------GSSVTCGDFTPDGKTI-CTGSDDATLRVWNPKSGENIHVIRGHP------------------YHTEGLTC 241 (394)
Q Consensus 191 ----------~~~v~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~------------------~~~~~i~~ 241 (394)
-.....++++|++++| ++-+.++.|++||+.++.......+.+ ..-.....
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G 808 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG 808 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence 1234678999998854 555667899999998765322111100 00112457
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEec-------------cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 016187 242 LTISADSTLALSGSKDGSVHMVNITTGKVVSSLV-------------SHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQ 308 (394)
Q Consensus 242 ~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-------------~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~ 308 (394)
++++++|.++++-..+++|++||..++....... +.-.....+++++++.++++-+.+++|++||+.
T Consensus 809 vavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 809 VLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred eeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 8899999999999999999999998876543221 111246789999999999998999999999997
Q ss_pred CCC
Q 016187 309 HSL 311 (394)
Q Consensus 309 ~~~ 311 (394)
+..
T Consensus 889 ~~~ 891 (1057)
T PLN02919 889 KGE 891 (1057)
T ss_pred CCc
Confidence 653
No 270
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=7.6e-10 Score=99.93 Aligned_cols=272 Identities=13% Similarity=0.206 Sum_probs=187.1
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecC-----------CCeEEEEeCC
Q 016187 111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-----------DSTVWMWNAD 179 (394)
Q Consensus 111 ~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~-----------d~~i~iw~~~ 179 (394)
+-+.|||-|.||+|--.-| |.+|--.+......+. +..|..+.|+|..++|++=+. ...++|||+.
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~--Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY--HPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc--CCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 5689999999999998776 8899765555444443 345888999999999998553 2579999999
Q ss_pred ccceeeeecccC--cCe-EEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeC
Q 016187 180 RAAYLNMFSGHG--SSV-TCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK 256 (394)
Q Consensus 180 ~~~~~~~~~~h~--~~v-~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~ 256 (394)
++...+.+..-. ..+ .-..||.|++++|--.. .+|.||+..+ ...+...+....+|....|+|.+.+||--..
T Consensus 291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtps---f~lld~Kslki~gIr~FswsP~~~llAYwtp 366 (698)
T KOG2314|consen 291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPS---FMLLDKKSLKISGIRDFSWSPTSNLLAYWTP 366 (698)
T ss_pred ccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCc---eeeecccccCCccccCcccCCCcceEEEEcc
Confidence 998877766522 222 24589999999987665 5688998765 3344444555678889999999988875432
Q ss_pred -----CCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEE----------eCCCcEEEEeCCCC-CcceeccCCC
Q 016187 257 -----DGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATG----------SMDQKLIIWDLQHS-LPRSTCDHED 320 (394)
Q Consensus 257 -----dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~----------s~dg~i~iwd~~~~-~~~~~~~~~~ 320 (394)
-..+.+..+.+++.+++-.-|.-.=..+.|-.+|.+|+.- +.-..+.|+.++.. .+........
T Consensus 367 e~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke 446 (698)
T KOG2314|consen 367 ETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKE 446 (698)
T ss_pred cccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecch
Confidence 2356677777777766544433222345566677777642 22224666766554 3334445567
Q ss_pred CEEEEEEeCCCCEEEEEeC---CCeEEEEECCC----CeEEEEeecccCceeEEEEccCCCEEEEE---eCCCcEEEEec
Q 016187 321 GVTCLMWLGTSKYVVTGCV---DGKVRVWDSLS----GDCVRTFSGHRDAIQAISVSAHQDFLVSV---SLDGTARVFEI 390 (394)
Q Consensus 321 ~v~~~~~~~~~~~l~sg~~---dg~i~iwd~~~----~~~~~~~~~h~~~v~~l~~~~~~~~l~s~---s~dg~i~iw~~ 390 (394)
.|...+|-|.|..+++-+. ..++.+|.+.+ .++++.|.. ...+.|.|+|.|++++.+ |..|.+.++|.
T Consensus 447 ~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~ 524 (698)
T KOG2314|consen 447 SVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDT 524 (698)
T ss_pred heeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEec
Confidence 7889999999987765543 35688887652 234445543 456889999999998865 45788998886
Q ss_pred c
Q 016187 391 A 391 (394)
Q Consensus 391 ~ 391 (394)
.
T Consensus 525 ~ 525 (698)
T KOG2314|consen 525 D 525 (698)
T ss_pred c
Confidence 5
No 271
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=7.2e-10 Score=100.26 Aligned_cols=295 Identities=14% Similarity=0.199 Sum_probs=189.3
Q ss_pred CeEEEEEcCCCeeeEeecCc---ccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCE
Q 016187 87 DKGFFWRINQGDWASEIQGH---KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHI 163 (394)
Q Consensus 87 ~~v~~w~~~~~~~~~~~~~h---~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 163 (394)
..+.+|+............+ ..+++..++|++|+++|-+ .+..++|++..++..+.+.... .+..+.|+|.+++
T Consensus 11 e~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~y 87 (566)
T KOG2315|consen 11 EGFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYS-DNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNY 87 (566)
T ss_pred ceeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEE-cCCeEEEEEccCCcEEEEeccc--eeeeeeecccccc
Confidence 34556765432222222223 3457788999999888755 4678999998888655444433 6889999999988
Q ss_pred EEEe-----cC-----CCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCC
Q 016187 164 VLAG-----SE-----DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHP 233 (394)
Q Consensus 164 l~~~-----s~-----d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 233 (394)
|.+= .. .-.+.+|++.++.....++.....-++..|++|..+.| --..+.+.+|++...+.+ .+.
T Consensus 88 L~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~----~~k 162 (566)
T KOG2315|consen 88 LLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAA-RLVSNEVQFYDLGSFKTI----QHK 162 (566)
T ss_pred cccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhh-hhhcceEEEEecCCccce----eee
Confidence 7751 12 23577999988544444443332225778888765432 233467999998763322 233
Q ss_pred CcccCeEEEEEcCCC--CEEEE-----EeCCCcEEEEECCCCcEE-----EEeccCCCCEEEEEECCCCC-e--EEEEeC
Q 016187 234 YHTEGLTCLTISADS--TLALS-----GSKDGSVHMVNITTGKVV-----SSLVSHTDSIECIGFSRSSP-W--AATGSM 298 (394)
Q Consensus 234 ~~~~~i~~~~~~~~~--~~l~~-----g~~dg~i~i~d~~~~~~~-----~~~~~h~~~i~~v~~~~~~~-~--l~s~s~ 298 (394)
.+..+++.+.++|.+ ..+++ ++.-+.++||.......- +++. ...--.+.|++-+. + |++...
T Consensus 163 l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdV 240 (566)
T KOG2315|consen 163 LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF--KADKVQMKWNKLGTALLVLASTDV 240 (566)
T ss_pred eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc--ccceeEEEeccCCceEEEEEEEee
Confidence 456778888888863 33333 455668999987632111 1111 11122456766554 2 233333
Q ss_pred CC---------cEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEE--EEeCCCeEEEEECCCCeEEEEeecccCceeEE
Q 016187 299 DQ---------KLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVV--TGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAI 367 (394)
Q Consensus 299 dg---------~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l 367 (394)
|. ++.+.+++....+......++|.++.|+++++.++ -|-+=.++.|||++ ++.+..|. .++=+++
T Consensus 241 Dktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~ 317 (566)
T KOG2315|consen 241 DKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTA 317 (566)
T ss_pred cCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccce
Confidence 33 57777777555555556678999999999996544 45677889999975 55665543 4566789
Q ss_pred EEccCCCEEEEEeC---CCcEEEEeccCCC
Q 016187 368 SVSAHQDFLVSVSL---DGTARVFEIADFK 394 (394)
Q Consensus 368 ~~~~~~~~l~s~s~---dg~i~iw~~~~~~ 394 (394)
-|+|.|++|+-+|- -|.|.+||+.++|
T Consensus 318 ~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K 347 (566)
T KOG2315|consen 318 FFNPHGNIILLAGFGNLPGDMEVWDVPNRK 347 (566)
T ss_pred EECCCCCEEEEeecCCCCCceEEEeccchh
Confidence 99999999998875 5899999998865
No 272
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.37 E-value=4.4e-12 Score=114.08 Aligned_cols=282 Identities=13% Similarity=0.231 Sum_probs=184.5
Q ss_pred EeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-------ceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeE
Q 016187 101 SEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG-------NLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTV 173 (394)
Q Consensus 101 ~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i 173 (394)
..+.||...|+.++--.+.+-+++++.|++|++|.+... .+..+++.|..+|..+.|-.+.+++++ .|+.|
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~gi 806 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGI 806 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcc
Confidence 457899999999877667788999999999999987532 245577889999999999988777664 68999
Q ss_pred EEEeCCccceeeeec-----ccCcCeEEEEECCCCCeEEEE-eCCCcEEEEcCCCCceEEEEcCC--CCcccCeEEEEEc
Q 016187 174 WMWNADRAAYLNMFS-----GHGSSVTCGDFTPDGKTICTG-SDDATLRVWNPKSGENIHVIRGH--PYHTEGLTCLTIS 245 (394)
Q Consensus 174 ~iw~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~--~~~~~~i~~~~~~ 245 (394)
.+||.=.+..+..+. +..+.|.|+. +-+...+..| +...+|+++|.+..+-...++.. +....-++++++.
T Consensus 807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred eeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 999975554443221 1223344432 1134444444 78899999999988765555432 3344568899999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEE-EeCCCCCcceeccCCCCEEE
Q 016187 246 ADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLII-WDLQHSLPRSTCDHEDGVTC 324 (394)
Q Consensus 246 ~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~i-wd~~~~~~~~~~~~~~~v~~ 324 (394)
+.|+.++++-.+|+|.+.|.++|+.+.+...-.-....++ .|..+.|+....|.++.+ |-...+..............
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppepah 964 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAH 964 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchh
Confidence 9999999999999999999999998876654333332232 355667888888888888 75433322111110000000
Q ss_pred EEEeCCCCEEEEEeCCCeEEEEE-CCC---CeEEEEe--ecccCceeEEEEccCCCEEEEEeCCCcEEE
Q 016187 325 LMWLGTSKYVVTGCVDGKVRVWD-SLS---GDCVRTF--SGHRDAIQAISVSAHQDFLVSVSLDGTARV 387 (394)
Q Consensus 325 ~~~~~~~~~l~sg~~dg~i~iwd-~~~---~~~~~~~--~~h~~~v~~l~~~~~~~~l~s~s~dg~i~i 387 (394)
-.-.-|.-|+++.....+.+|- ... ...+..+ ....+..++++.-|=...++.|..-|.|++
T Consensus 965 -flqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 965 -FLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred -hhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 0011245566666666677772 110 0111111 123456778887787777778888888875
No 273
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=2.9e-10 Score=106.41 Aligned_cols=308 Identities=17% Similarity=0.229 Sum_probs=199.5
Q ss_pred CcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCC------C------CEEEEEeCCCcEE
Q 016187 65 DEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMD------G------QLLASGGLDGLVQ 132 (394)
Q Consensus 65 ~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~------g------~~l~t~s~d~~i~ 132 (394)
..-.++.|+|.+ +||-|+. ..|.+-|..+.+.++.++-|...|+.+.|.|- + -+||++...|.|.
T Consensus 16 sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 16 SNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred ccccccccCccc--eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 335677899853 7888765 56778888888899999999999999999872 1 2567777889999
Q ss_pred EEeCCCCceEEEEecCCCCEEEEEEcC---CC-CEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECC-CCCeEE
Q 016187 133 IWDPSSGNLKCTLEGPGGGVEWVSWHP---RG-HIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTP-DGKTIC 207 (394)
Q Consensus 133 vwd~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~ 207 (394)
+||...+.....+..+..++..++|-+ ++ .+|++-...+++.+|+..++..+-.+........|+.+.| |.+.+.
T Consensus 93 l~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~ 172 (1062)
T KOG1912|consen 93 LVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFC 172 (1062)
T ss_pred EEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEE
Confidence 999999988888888888888888865 34 4777888889999999999887766655556667788877 555555
Q ss_pred EEeCCCcEEEEcCCC-------CceEEEEcCC------------------------------------------------
Q 016187 208 TGSDDATLRVWNPKS-------GENIHVIRGH------------------------------------------------ 232 (394)
Q Consensus 208 s~~~dg~i~vwd~~~-------~~~~~~~~~~------------------------------------------------ 232 (394)
.-+..|.+-+-+... ++..+.-..+
T Consensus 173 ~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~pr 252 (1062)
T KOG1912|consen 173 VLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPR 252 (1062)
T ss_pred EEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEecc
Confidence 555556555554311 1111110000
Q ss_pred ----------------CCcccCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCCcEEEEe-----cc-CCCCEE------
Q 016187 233 ----------------PYHTEGLTCLTISADS--TLALSGSKDGSVHMVNITTGKVVSSL-----VS-HTDSIE------ 282 (394)
Q Consensus 233 ----------------~~~~~~i~~~~~~~~~--~~l~~g~~dg~i~i~d~~~~~~~~~~-----~~-h~~~i~------ 282 (394)
+....++..+.+-|++ ..+++...||.+.+|-.+......+. .. -...+.
T Consensus 253 ellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~ 332 (1062)
T KOG1912|consen 253 ELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPME 332 (1062)
T ss_pred ceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeech
Confidence 0011122234444543 47888999999999976542111110 00 011122
Q ss_pred -----EEEECCC-CCeEEEEeCCCcEEEEeCCCCCcce--------------------------------eccCCCCEEE
Q 016187 283 -----CIGFSRS-SPWAATGSMDQKLIIWDLQHSLPRS--------------------------------TCDHEDGVTC 324 (394)
Q Consensus 283 -----~v~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~--------------------------------~~~~~~~v~~ 324 (394)
.....|. ...++.--.+|.+.+|.++.+.... ...|..+.++
T Consensus 333 ~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~ 412 (1062)
T KOG1912|consen 333 EFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTC 412 (1062)
T ss_pred hcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCcee
Confidence 2223343 2333334456777778765221000 0124445554
Q ss_pred EEEeC-----------CC-------CEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCE
Q 016187 325 LMWLG-----------TS-------KYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDF 375 (394)
Q Consensus 325 ~~~~~-----------~~-------~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 375 (394)
....| .+ ..+|.|...|+|.++|+.++..-+.|..|...|.++.|.....+
T Consensus 413 ~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~ssl 481 (1062)
T KOG1912|consen 413 VRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSL 481 (1062)
T ss_pred eecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeE
Confidence 43332 11 37889999999999999999999999999999999999765443
No 274
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.36 E-value=3.1e-10 Score=94.72 Aligned_cols=260 Identities=15% Similarity=0.223 Sum_probs=169.4
Q ss_pred CCeEEEEEcCCCeeeE--ee-cCcccCEEEEEEcC---CCC-EEEEEeCCCcEEEEeCCCCceEEEEecCCC------CE
Q 016187 86 DDKGFFWRINQGDWAS--EI-QGHKDSVSSLAFSM---DGQ-LLASGGLDGLVQIWDPSSGNLKCTLEGPGG------GV 152 (394)
Q Consensus 86 d~~v~~w~~~~~~~~~--~~-~~h~~~V~~v~~s~---~g~-~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~------~v 152 (394)
.|.+.++++...+... ++ ..-+..+..|.|.. +|. .|+-+-..|.|.++..........+.+-.. ..
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 4567788876655433 11 12334566777763 455 566777889999987654444444433211 23
Q ss_pred EEEEEcCCCCEEEEecCCCeEEEEeCCccce--eeeecccCcCeEEEEECC-CCCeEEEEeCCCcEEEEcCCCCceEEEE
Q 016187 153 EWVSWHPRGHIVLAGSEDSTVWMWNADRAAY--LNMFSGHGSSVTCGDFTP-DGKTICTGSDDATLRVWNPKSGENIHVI 229 (394)
Q Consensus 153 ~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~--~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 229 (394)
.++.|++.+..++++-.+|.+.+-+...... .+.+++|..++.-++|+. +.+.+.+|+.|+.+.-||++..+. ..+
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~-~i~ 203 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT-FIW 203 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc-eee
Confidence 4677888898999998999998666554433 347899999999899986 456889999999999999994442 233
Q ss_pred cCCCCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CcEEEEeccCCCCEEEEEECCCCC-eEEEEeCCCcEEEEe
Q 016187 230 RGHPYHTEGLTCLTISA-DSTLALSGSKDGSVHMVNITT-GKVVSSLVSHTDSIECIGFSRSSP-WAATGSMDQKLIIWD 306 (394)
Q Consensus 230 ~~~~~~~~~i~~~~~~~-~~~~l~~g~~dg~i~i~d~~~-~~~~~~~~~h~~~i~~v~~~~~~~-~l~s~s~dg~i~iwd 306 (394)
.....|..+|.++.-+| .+.++++|+.|..|++||.++ ++++..-. -.+.|..+..+|.-. .++.+..-.-.+|-+
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~ 282 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILD 282 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEE
Confidence 33445788899988776 578999999999999999985 45554432 347888888888643 223333333456665
Q ss_pred CCCCCcc------eeccCCCCEEEEEEeCCCCEEEEEe-CCCeEE-EEE
Q 016187 307 LQHSLPR------STCDHEDGVTCLMWLGTSKYVVTGC-VDGKVR-VWD 347 (394)
Q Consensus 307 ~~~~~~~------~~~~~~~~v~~~~~~~~~~~l~sg~-~dg~i~-iwd 347 (394)
+...... ....|..-+....|.....+|+|++ .|..++ +|-
T Consensus 283 ~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 283 SSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred ecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeee
Confidence 5443222 1223444455555644456677754 455544 664
No 275
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.36 E-value=8.6e-09 Score=104.24 Aligned_cols=323 Identities=11% Similarity=0.140 Sum_probs=196.7
Q ss_pred CCcEEEEEEcCCCCcEEEEecCCCeEEEE----EcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCC--
Q 016187 64 SDEVYSVACSPTDATLVATGGGDDKGFFW----RINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS-- 137 (394)
Q Consensus 64 ~~~v~~~~~~p~~~~~lasg~~d~~v~~w----~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~-- 137 (394)
.+.|.++.+.++... ++-+..+|.|.+. +....+ +.....-...|.+++||||++.|+.+..+++|.+-+..
T Consensus 75 ~~~ivs~~yl~d~~~-l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd 152 (928)
T PF04762_consen 75 NDKIVSFQYLADSES-LCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFD 152 (928)
T ss_pred CCcEEEEEeccCCCc-EEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccce
Confidence 467888888885443 3445567788777 433322 12222234689999999999999999999888775311
Q ss_pred -----------CC----------ceEEEEe------------c------------CCCCEEEEEEcCCCCEEEEecC---
Q 016187 138 -----------SG----------NLKCTLE------------G------------PGGGVEWVSWHPRGHIVLAGSE--- 169 (394)
Q Consensus 138 -----------~~----------~~~~~~~------------~------------~~~~v~~~~~~~~~~~l~~~s~--- 169 (394)
-| +....+. . ....-..++|-.||.++++.+-
T Consensus 153 ~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~ 232 (928)
T PF04762_consen 153 PISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPE 232 (928)
T ss_pred EEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcC
Confidence 00 0000110 0 1123356889999999988764
Q ss_pred C---CeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeC---CCcEEEEcCCCCceEEEEcCC-CCcccCeEEE
Q 016187 170 D---STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD---DATLRVWNPKSGENIHVIRGH-PYHTEGLTCL 242 (394)
Q Consensus 170 d---~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~-~~~~~~i~~~ 242 (394)
. ..+++|+-+ +.....-..-.+--.+++|-|.|+++|+... ...|.+|. ++|..-..+... ......+..+
T Consensus 233 ~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l 310 (928)
T PF04762_consen 233 TGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIEL 310 (928)
T ss_pred CCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEE
Confidence 2 578999876 3322221111222236799999999998764 34566776 334332222221 1134568999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCcEE--EEecc-CCCCEEEEEECCCCCe-EEEEeCCCcEEEEeCC----CCC---
Q 016187 243 TISADSTLALSGSKDGSVHMVNITTGKVV--SSLVS-HTDSIECIGFSRSSPW-AATGSMDQKLIIWDLQ----HSL--- 311 (394)
Q Consensus 243 ~~~~~~~~l~~g~~dg~i~i~d~~~~~~~--~~~~~-h~~~i~~v~~~~~~~~-l~s~s~dg~i~iwd~~----~~~--- 311 (394)
.|++++.+|+.--.|. |.+|-..+..-. +.+.. ....+..+.|+|..++ |...+.+|.+..++.. ...
T Consensus 311 ~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~ 389 (928)
T PF04762_consen 311 AWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSS 389 (928)
T ss_pred EECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCC
Confidence 9999999999977655 999998776422 22221 2334555889987553 5555555666554431 000
Q ss_pred -----------------------------cceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCe--------EE
Q 016187 312 -----------------------------PRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGD--------CV 354 (394)
Q Consensus 312 -----------------------------~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~--------~~ 354 (394)
..........|.+++|++++..+++-..||.|.+|...... ..
T Consensus 390 ~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~ 469 (928)
T PF04762_consen 390 PNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLL 469 (928)
T ss_pred ccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchh
Confidence 00111245678999999999889999999999999743221 11
Q ss_pred EEeec----------ccCceeEEEEccCCCEEEEEeCC---CcEEEEecc
Q 016187 355 RTFSG----------HRDAIQAISVSAHQDFLVSVSLD---GTARVFEIA 391 (394)
Q Consensus 355 ~~~~~----------h~~~v~~l~~~~~~~~l~s~s~d---g~i~iw~~~ 391 (394)
..+.. -...+..++|..+..+++....+ ..+.++++.
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 519 (928)
T PF04762_consen 470 SSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDID 519 (928)
T ss_pred hhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEec
Confidence 11211 13456788887777666655554 567777663
No 276
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.36 E-value=3.9e-10 Score=94.12 Aligned_cols=224 Identities=16% Similarity=0.195 Sum_probs=145.3
Q ss_pred EEEEecCCCeEEEEeCCccceeeeecc---cC---cCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCc--eEEEEcCCCC
Q 016187 163 IVLAGSEDSTVWMWNADRAAYLNMFSG---HG---SSVTCGDFTPDGKTICTGSDDATLRVWNPKSGE--NIHVIRGHPY 234 (394)
Q Consensus 163 ~l~~~s~d~~i~iw~~~~~~~~~~~~~---h~---~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~ 234 (394)
.++-+-..|.|.++..........+.+ .. ....++.|++.+..++++-.+|.+.+-+..... ..+.++.
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~--- 163 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKV--- 163 (339)
T ss_pred eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccc---
Confidence 456667788888887654332222222 11 124577899999999999999999855543322 1223443
Q ss_pred cccCeEEEEEcC-CCCEEEEEeCCCcEEEEECC-CCcEEEE-eccCCCCEEEEEECCC-CCeEEEEeCCCcEEEEeCCC-
Q 016187 235 HTEGLTCLTISA-DSTLALSGSKDGSVHMVNIT-TGKVVSS-LVSHTDSIECIGFSRS-SPWAATGSMDQKLIIWDLQH- 309 (394)
Q Consensus 235 ~~~~i~~~~~~~-~~~~l~~g~~dg~i~i~d~~-~~~~~~~-~~~h~~~i~~v~~~~~-~~~l~s~s~dg~i~iwd~~~- 309 (394)
|........|+. +..++++|+.|+.+..||++ .++.+.. .+.|+..|.++.-+|. +.++++|+.|..|++||++.
T Consensus 164 He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm 243 (339)
T KOG0280|consen 164 HEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNM 243 (339)
T ss_pred cceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcc
Confidence 455566666765 44688999999999999998 3344433 5668899999988864 66899999999999999984
Q ss_pred CCcceeccCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCC--e---EEEEeecccCceeEEEEccCCCEEEEEe-CC
Q 016187 310 SLPRSTCDHEDGVTCLMWLGTSK-YVVTGCVDGKVRVWDSLSG--D---CVRTFSGHRDAIQAISVSAHQDFLVSVS-LD 382 (394)
Q Consensus 310 ~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~~dg~i~iwd~~~~--~---~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~d 382 (394)
.++.....-.++|..+.++|.-. .|+.++.-.-.+|-+.... + .+..++.|..-+..-.|......||||+ .|
T Consensus 244 ~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYD 323 (339)
T KOG0280|consen 244 GKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYD 323 (339)
T ss_pred cCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccc
Confidence 34444444457899999988643 3333444444566654432 2 3344556664444444433345688876 68
Q ss_pred CcEE-EEe
Q 016187 383 GTAR-VFE 389 (394)
Q Consensus 383 g~i~-iw~ 389 (394)
+.++ +|-
T Consensus 324 k~~~~~Wl 331 (339)
T KOG0280|consen 324 KKIRQLWL 331 (339)
T ss_pred cceeeeee
Confidence 8766 774
No 277
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.35 E-value=2.9e-09 Score=98.71 Aligned_cols=264 Identities=16% Similarity=0.120 Sum_probs=164.8
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEE
Q 016187 119 GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGD 198 (394)
Q Consensus 119 g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~ 198 (394)
+.++++++.++.|..+|..+|+.+-............. .++..++.++.++.++.+|..+++.+-...... .+.+.-
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCC
Confidence 66888888999999999999998765543332111121 246678888899999999998887665433222 221110
Q ss_pred ECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcc--cCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEecc
Q 016187 199 FTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHT--EGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS 276 (394)
Q Consensus 199 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~ 276 (394)
.. .+..++.++.+|.|..||.++++.+.......... ....+..+. +..++.+..++.+..+|+.+|+.+-+...
T Consensus 142 ~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~ 218 (377)
T TIGR03300 142 LV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRV 218 (377)
T ss_pred EE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecc
Confidence 11 34567778889999999999998766554321000 000011111 24677888899999999999986643321
Q ss_pred CCC----C---EEEEEECC--CCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 016187 277 HTD----S---IECIGFSR--SSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWD 347 (394)
Q Consensus 277 h~~----~---i~~v~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd 347 (394)
... . ...+.-+| .+..++.++.+|.+..||..+........... .... ...+..|+.++.+|.|+.+|
T Consensus 219 ~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~-~~~p--~~~~~~vyv~~~~G~l~~~d 295 (377)
T TIGR03300 219 ALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS-YQGP--AVDDNRLYVTDADGVVVALD 295 (377)
T ss_pred ccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC-ccCc--eEeCCEEEEECCCCeEEEEE
Confidence 100 0 00000011 24567778889999999998765444332211 1111 12456788888999999999
Q ss_pred CCCCeEEEEeecccC-ceeEEEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 348 SLSGDCVRTFSGHRD-AIQAISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 348 ~~~~~~~~~~~~h~~-~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
..+|+.+-++..... ....... .+..|+.++.+|.+.+++..+.
T Consensus 296 ~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG 340 (377)
T TIGR03300 296 RRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDG 340 (377)
T ss_pred CCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCC
Confidence 999988766532222 2222222 3568888999999999987654
No 278
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.34 E-value=2.7e-11 Score=112.50 Aligned_cols=280 Identities=19% Similarity=0.265 Sum_probs=186.8
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----ceEEEEecCCCCEEEEEEcCCC--CEEEEecCCCeEEEEeCCc
Q 016187 107 KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG----NLKCTLEGPGGGVEWVSWHPRG--HIVLAGSEDSTVWMWNADR 180 (394)
Q Consensus 107 ~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~--~~l~~~s~d~~i~iw~~~~ 180 (394)
..++.++..+|.|+-+|.++.-|- .+-|+... +.+..+.. -.|-.+.|+|.. .+-++......-.+|++..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~h~tp--w~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ 100 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLHHITP--WQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAK 100 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCe-EEEeccCCCCCceeeeccCc--chhcceecccCCCCceeEEecCcchhhhhhhhc
Confidence 456788999999999999988774 44454432 22322221 134456777653 3444444445566787643
Q ss_pred ---cceeeeecccCcCeEEEEECCCC-CeEEEEeCCCcEEEEcCCCCceE-EEEcCCCCcccCeEEEEEcCCCCEEEEEe
Q 016187 181 ---AAYLNMFSGHGSSVTCGDFTPDG-KTICTGSDDATLRVWNPKSGENI-HVIRGHPYHTEGLTCLTISADSTLALSGS 255 (394)
Q Consensus 181 ---~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~g~ 255 (394)
......+.||+..++.+.|+|.. ..+++++.|..+..||+++.... .... ....+.+.+.|+-....+++.+
T Consensus 101 ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~---~w~s~asqVkwnyk~p~vlass 177 (1081)
T KOG0309|consen 101 SSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTS---SWRSAASQVKWNYKDPNVLASS 177 (1081)
T ss_pred CCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeee---cccccCceeeecccCcchhhhc
Confidence 23344567899999999999854 57899999999999999876532 2211 1123456678887766777778
Q ss_pred CCCcEEEEECCCC-cEEEEeccCCCCEEEEEECCC-CCeEEEEeCCCcEEEEeCCCCCc--ceeccCCCCEEEEEEeCCC
Q 016187 256 KDGSVHMVNITTG-KVVSSLVSHTDSIECIGFSRS-SPWAATGSMDQKLIIWDLQHSLP--RSTCDHEDGVTCLMWLGTS 331 (394)
Q Consensus 256 ~dg~i~i~d~~~~-~~~~~~~~h~~~i~~v~~~~~-~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~ 331 (394)
...-|++||++.| .++..++.|...|+.+.|..- ...+.+.+.|++|++||-.+... ........++.--.+.|-+
T Consensus 178 hg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg 257 (1081)
T KOG0309|consen 178 HGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFG 257 (1081)
T ss_pred cCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccC
Confidence 8889999999876 577888899999999988753 34578899999999999765422 2222233444444444443
Q ss_pred CEEEE-----------EeCCCeEEEEECCCC-eEEEEeecccCceeEEEEccCCC----------EEEEEeCCCcEEEEe
Q 016187 332 KYVVT-----------GCVDGKVRVWDSLSG-DCVRTFSGHRDAIQAISVSAHQD----------FLVSVSLDGTARVFE 389 (394)
Q Consensus 332 ~~l~s-----------g~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~----------~l~s~s~dg~i~iw~ 389 (394)
.-... ---+.....|++.++ +.+.+|.||.+.|....|-..+. .|+|=|.|.++|+|.
T Consensus 258 ~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWp 337 (1081)
T KOG0309|consen 258 EGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWP 337 (1081)
T ss_pred ceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeee
Confidence 21111 112233344555444 56889999999998777753222 689999999999998
Q ss_pred ccC
Q 016187 390 IAD 392 (394)
Q Consensus 390 ~~~ 392 (394)
+.+
T Consensus 338 I~~ 340 (1081)
T KOG0309|consen 338 IDS 340 (1081)
T ss_pred ccH
Confidence 763
No 279
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.33 E-value=5.6e-09 Score=107.47 Aligned_cols=240 Identities=14% Similarity=0.145 Sum_probs=161.2
Q ss_pred EEEEEcCC-CCEEEEEeCCCcEEEEeCCCCceEEEEec--C------------CCCEEEEEEcCCCCEEEEe-cCCCeEE
Q 016187 111 SSLAFSMD-GQLLASGGLDGLVQIWDPSSGNLKCTLEG--P------------GGGVEWVSWHPRGHIVLAG-SEDSTVW 174 (394)
Q Consensus 111 ~~v~~s~~-g~~l~t~s~d~~i~vwd~~~~~~~~~~~~--~------------~~~v~~~~~~~~~~~l~~~-s~d~~i~ 174 (394)
..+++++. |+++++-+.++.|+++|.. +.....+.. . -.....+++.++++.|+.+ ...+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46788875 5667777788899999975 444433322 1 0124678899888765554 4457899
Q ss_pred EEeCCccceeeeeccc-----------------CcCeEEEEECC-CCCeEEEEeCCCcEEEEcCCCCceEEEEcCCC---
Q 016187 175 MWNADRAAYLNMFSGH-----------------GSSVTCGDFTP-DGKTICTGSDDATLRVWNPKSGENIHVIRGHP--- 233 (394)
Q Consensus 175 iw~~~~~~~~~~~~~h-----------------~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--- 233 (394)
.+|..++.. ..+.+- -.....++|+| ++..+++.+.++.|++||..++... .+.+..
T Consensus 650 ~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER 727 (1057)
T ss_pred EEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence 999876542 222110 11345789999 5666677788899999998776532 221110
Q ss_pred ---------CcccCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEe-------------ccC--------CCCEE
Q 016187 234 ---------YHTEGLTCLTISADST-LALSGSKDGSVHMVNITTGKVVSSL-------------VSH--------TDSIE 282 (394)
Q Consensus 234 ---------~~~~~i~~~~~~~~~~-~l~~g~~dg~i~i~d~~~~~~~~~~-------------~~h--------~~~i~ 282 (394)
..-.....++++|++. ++++.+.++.|++||+.++...... -.+ -....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 0112355689999987 5566677899999999876532110 000 11245
Q ss_pred EEEECCCCCeEEEEeCCCcEEEEeCCCCCcceecc--------------CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 016187 283 CIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCD--------------HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDS 348 (394)
Q Consensus 283 ~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~ 348 (394)
.+++++++.++++-+.+++|++||..+.......+ .-.....++++++++.+++-+.++.|++||+
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 78999999988888999999999987654332221 1124678899999999899899999999999
Q ss_pred CCCeE
Q 016187 349 LSGDC 353 (394)
Q Consensus 349 ~~~~~ 353 (394)
.+++.
T Consensus 888 ~~~~~ 892 (1057)
T PLN02919 888 NKGEA 892 (1057)
T ss_pred CCCcc
Confidence 88765
No 280
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.33 E-value=6.9e-10 Score=103.07 Aligned_cols=276 Identities=17% Similarity=0.237 Sum_probs=194.8
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc---------------eEEEEecCCCCEEEEEEcCCCCEEEEecCCCe
Q 016187 108 DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN---------------LKCTLEGPGGGVEWVSWHPRGHIVLAGSEDST 172 (394)
Q Consensus 108 ~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~ 172 (394)
....|++|+....++|.|+.||.++|..+.+.. .-.++.+|.+.|.-+.|+.+...|-+...+|-
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL 94 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence 457899999999999999999999998765321 11356789999999999999999999999999
Q ss_pred EEEEeCCccceeeeec--ccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceE-EEEcCCCCcccCeEEEEEcCCCC
Q 016187 173 VWMWNADRAAYLNMFS--GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENI-HVIRGHPYHTEGLTCLTISADST 249 (394)
Q Consensus 173 i~iw~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~ 249 (394)
|.+|-+-.+.-...+- ...+.|.++.|+.+|..++....||.|.+=.+..++.. +.+++ .-...+.|++|..
T Consensus 95 IiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg-----~~l~hv~ws~D~~ 169 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG-----QLLAHVLWSEDLE 169 (1189)
T ss_pred EEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch-----heccceeecccHH
Confidence 9999987665332221 23456789999999999999999999887665443221 11222 1245678999999
Q ss_pred EEEEEeCCCcEEEEECCCCc-------EEEE----eccCCCCEEEEEE--------CCCCCeEEEEeCCCcEEEEeCCCC
Q 016187 250 LALSGSKDGSVHMVNITTGK-------VVSS----LVSHTDSIECIGF--------SRSSPWAATGSMDQKLIIWDLQHS 310 (394)
Q Consensus 250 ~l~~g~~dg~i~i~d~~~~~-------~~~~----~~~h~~~i~~v~~--------~~~~~~l~s~s~dg~i~iwd~~~~ 310 (394)
.++.+-..|.++++|....- +... +......|..+.| -|+.+.||.+-..|.+.|-.-...
T Consensus 170 ~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND 249 (1189)
T KOG2041|consen 170 QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEND 249 (1189)
T ss_pred HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCC
Confidence 99999999999999975421 1111 1111112333333 368889999999999887543322
Q ss_pred CcceeccCCCCEEEEEEeCCCCEEEEEeCCC---------eEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeC
Q 016187 311 LPRSTCDHEDGVTCLMWLGTSKYVVTGCVDG---------KVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSL 381 (394)
Q Consensus 311 ~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg---------~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~ 381 (394)
.......-.-.+..+.|+++|..|+.++.+. .|.++. .-|+.+..++.....|+++.|-..|-.+|-+ .
T Consensus 250 ~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~A-v 327 (1189)
T KOG2041|consen 250 PEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAIA-V 327 (1189)
T ss_pred CCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEEEE-e
Confidence 2222222334577889999999999887542 466664 4688888898888889999998777666543 4
Q ss_pred CCcEEEEec
Q 016187 382 DGTARVFEI 390 (394)
Q Consensus 382 dg~i~iw~~ 390 (394)
|+.|.+=++
T Consensus 328 dsfiyfanI 336 (1189)
T KOG2041|consen 328 DSFIYFANI 336 (1189)
T ss_pred cceEEEEee
Confidence 666665544
No 281
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.31 E-value=1.6e-08 Score=89.91 Aligned_cols=304 Identities=16% Similarity=0.214 Sum_probs=182.3
Q ss_pred EcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCC-cEEEEeCCCCceEEEEecCCC
Q 016187 72 CSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG-LVQIWDPSSGNLKCTLEGPGG 150 (394)
Q Consensus 72 ~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~-~i~vwd~~~~~~~~~~~~~~~ 150 (394)
|++.++.++|..|. |.+++.+...+-.+. -+|...|+-..+..+++-++.|..|| .+-|+|..+++... +...-+
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg 402 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLG 402 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCcc
Confidence 55556778877765 677776654443332 35788899999999999999999999 89999998887554 455678
Q ss_pred CEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCC----CcEEEEcCCCCceE
Q 016187 151 GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD----ATLRVWNPKSGENI 226 (394)
Q Consensus 151 ~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~ 226 (394)
.|.++..+|+|+.++.+.....+++.|+.++.....-+..-+-|+..+|+|+++++|-+--+ ..|+++|+..++..
T Consensus 403 ~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy 482 (668)
T COG4946 403 NIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIY 482 (668)
T ss_pred ceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEE
Confidence 89999999999999999999999999999887654444456778999999999999976555 47899999887654
Q ss_pred EEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEe--ccCCCCEEEEE----ECCCCCeEE-EEeCC
Q 016187 227 HVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL--VSHTDSIECIG----FSRSSPWAA-TGSMD 299 (394)
Q Consensus 227 ~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~--~~h~~~i~~v~----~~~~~~~l~-s~s~d 299 (394)
.... ...+ =.+-+|.|++++|.--+. +-.|....+.+..+ ..+..+-..+. .+|-.+..- .-+.+
T Consensus 483 ~vTT-~ta~---DfsPaFD~d~ryLYfLs~----RsLdPs~Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~~~~ea 554 (668)
T COG4946 483 DVTT-PTAY---DFSPAFDPDGRYLYFLSA----RSLDPSNDRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDEANSEA 554 (668)
T ss_pred EecC-Cccc---ccCcccCCCCcEEEEEec----cccCCCCCeeEEEEEEeeeccceEEEecCCCCChhhcCchhcCccc
Confidence 3322 1111 223468889987754332 11233333333222 22222211111 111111110 11223
Q ss_pred CcEEEEeCCCCCcc---------eeccCCCC-EEEEEEeCCC---CEEEEEeCCCeEEEEECCCCeEEEEeecccCceeE
Q 016187 300 QKLIIWDLQHSLPR---------STCDHEDG-VTCLMWLGTS---KYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQA 366 (394)
Q Consensus 300 g~i~iwd~~~~~~~---------~~~~~~~~-v~~~~~~~~~---~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 366 (394)
+.+-+=++...... ...+.... |.-..+--.| .+.-.+-..|.+.+||+.+.+.- .-...+.+
T Consensus 555 ~e~dle~ie~r~eP~pVee~dY~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~l~~ydletkk~~----e~k~nvss 630 (668)
T COG4946 555 GEVDLEGIEDRVEPFPVEEGDYRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGRLEKYDLETKKVE----EYKDNVSS 630 (668)
T ss_pred cceehhhhcccccccccCccceeEeeecCCCeEEEEEeeccchhhhhhcCCCccceEEEEecchhhHH----HHhcccce
Confidence 33322222111000 00000000 1000000001 11112233456666665544321 22356889
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 367 ISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 367 l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
+..|+|+.+++. -.||.+++++++-
T Consensus 631 ~rlS~D~s~ilv-k~d~kl~~f~vek 655 (668)
T COG4946 631 FRLSSDGSKILV-KLDGKLRLFDVEK 655 (668)
T ss_pred EEEcCCCCEEEE-EeCCeEEEEeccc
Confidence 999999999987 8899999999863
No 282
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.28 E-value=5.6e-08 Score=84.02 Aligned_cols=264 Identities=11% Similarity=0.166 Sum_probs=168.7
Q ss_pred CCcEEEEeCCCC--ceE-EEEecCCCCEEEEEEcCCCCEEEEecCC---CeEEEEeCCc--cce--eeeecccCcCeEEE
Q 016187 128 DGLVQIWDPSSG--NLK-CTLEGPGGGVEWVSWHPRGHIVLAGSED---STVWMWNADR--AAY--LNMFSGHGSSVTCG 197 (394)
Q Consensus 128 d~~i~vwd~~~~--~~~-~~~~~~~~~v~~~~~~~~~~~l~~~s~d---~~i~iw~~~~--~~~--~~~~~~h~~~v~~~ 197 (394)
+.-|.+|++.+. +.. ..+....+.++.++|+|+.+.|.++-.+ +.+.-|.++. +.. +........+...+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 467999987633 221 1222345678899999999988877654 6666665543 332 22222233444778
Q ss_pred EECCCCCeEEEEeC-CCcEEEEcCCCCceEEEEcCCCCccc----------CeEEEEEcCCCCEEEEEeC-CCcEEEEEC
Q 016187 198 DFTPDGKTICTGSD-DATLRVWNPKSGENIHVIRGHPYHTE----------GLTCLTISADSTLALSGSK-DGSVHMVNI 265 (394)
Q Consensus 198 ~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~----------~i~~~~~~~~~~~l~~g~~-dg~i~i~d~ 265 (394)
+++++|++|+++.. -|.|.++-+...-.+....+...|.. .+-+..+.|+++++++... --+|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999999988865 47899998865322111100001111 2677889999999888753 347999999
Q ss_pred CCCcEEEEec---cCCCCEEEEEECCCCCeEEEEe-CCCcEEEEeCCCCCcc--ee---------ccCCCCEEEEEEeCC
Q 016187 266 TTGKVVSSLV---SHTDSIECIGFSRSSPWAATGS-MDQKLIIWDLQHSLPR--ST---------CDHEDGVTCLMWLGT 330 (394)
Q Consensus 266 ~~~~~~~~~~---~h~~~i~~v~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~--~~---------~~~~~~v~~~~~~~~ 330 (394)
..|++...-. .......-|.|+|++++..... .+++|.+|........ .. ..-......+..+++
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 8776432211 2334567899999999876554 5889999987653111 00 112334567778999
Q ss_pred CCEEEEEeC-CCeEEEEECC--CCeE--EEEeecccCceeEEEEccCCCEEEEEeCC-CcEEEEecc
Q 016187 331 SKYVVTGCV-DGKVRVWDSL--SGDC--VRTFSGHRDAIQAISVSAHQDFLVSVSLD-GTARVFEIA 391 (394)
Q Consensus 331 ~~~l~sg~~-dg~i~iwd~~--~~~~--~~~~~~h~~~v~~l~~~~~~~~l~s~s~d-g~i~iw~~~ 391 (394)
|++|.+.-. ...|-+|.+. ++++ +.....+...-..+.|++.+++|+.+.++ ..|.+|.++
T Consensus 255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence 999988643 2367777654 3432 22223344445789999999999988875 568888764
No 283
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.23 E-value=1.2e-07 Score=82.37 Aligned_cols=218 Identities=17% Similarity=0.193 Sum_probs=145.9
Q ss_pred EEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEc-CCCCEEEEEeCCCcEEEEeCCCCceEEEEec
Q 016187 69 SVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFS-MDGQLLASGGLDGLVQIWDPSSGNLKCTLEG 147 (394)
Q Consensus 69 ~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s-~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~ 147 (394)
+..|.+.++.++.+--..+.|..|+..+++... +.... ...+++. ++|.++ .+... .+.++|..+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~-v~~~~-~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLY-VADSG-GIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEE-EEETT-CEEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEE-EEEcC-ceEEEecCCCcEEEEeec
Confidence 567888677888888888999999988876543 22111 6677787 665544 45544 456669998876544432
Q ss_pred -----CCCCEEEEEEcCCCCEEEEecCC--------CeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEE-EEeCCC
Q 016187 148 -----PGGGVEWVSWHPRGHIVLAGSED--------STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTIC-TGSDDA 213 (394)
Q Consensus 148 -----~~~~v~~~~~~~~~~~l~~~s~d--------~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~dg 213 (394)
.....+.+++.|+|++.++.... +.++.++.. ++..... ..-...+.++|+|+++.|+ +-+..+
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEEEEEETTTT
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceEECCcchheeecccccc
Confidence 33467889999999988776543 557777777 4433332 2345568899999999775 566778
Q ss_pred cEEEEcCCCCce-E---EEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEE-CC
Q 016187 214 TLRVWNPKSGEN-I---HVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGF-SR 288 (394)
Q Consensus 214 ~i~vwd~~~~~~-~---~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~-~~ 288 (394)
.|..+++..... + ..+...+......-.+++..+|+++++....+.|.+++.. |+.+..+......+++++| .+
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~ 235 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGP 235 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEEST
T ss_pred eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECC
Confidence 898888753221 1 1221111111236778999999999988899999999987 8888887766668999999 45
Q ss_pred CCCeEE
Q 016187 289 SSPWAA 294 (394)
Q Consensus 289 ~~~~l~ 294 (394)
+...|.
T Consensus 236 ~~~~L~ 241 (246)
T PF08450_consen 236 DGKTLY 241 (246)
T ss_dssp TSSEEE
T ss_pred CCCEEE
Confidence 655443
No 284
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.23 E-value=4.7e-08 Score=91.12 Aligned_cols=298 Identities=14% Similarity=0.091 Sum_probs=175.0
Q ss_pred EEEecCCCeEEEEEcCCCeeeEeecCcc--c--------CEE-EEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecC
Q 016187 80 VATGGGDDKGFFWRINQGDWASEIQGHK--D--------SVS-SLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGP 148 (394)
Q Consensus 80 lasg~~d~~v~~w~~~~~~~~~~~~~h~--~--------~V~-~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~ 148 (394)
+..++.++.+.-+|..+++.+-...-.. . .+. .+.. ++..++.++.++.+..+|..+|+.+-.....
T Consensus 72 vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~ 149 (394)
T PRK11138 72 VYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQTKVA 149 (394)
T ss_pred EEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccccCC
Confidence 3445667777778887777554332111 0 000 1111 3556777888999999999999987665433
Q ss_pred CCCEEE-EEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeE-EEEECC--CCCeEEEEeCCCcEEEEcCCCCc
Q 016187 149 GGGVEW-VSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVT-CGDFTP--DGKTICTGSDDATLRVWNPKSGE 224 (394)
Q Consensus 149 ~~~v~~-~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~-~~~~~~--~~~~l~s~~~dg~i~vwd~~~~~ 224 (394)
.. +.+ ... .+..++.++.++.+..+|..+++.+-.+........ ...-+| .+..++.++.+|.+...|..+|+
T Consensus 150 ~~-~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~ 226 (394)
T PRK11138 150 GE-ALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQ 226 (394)
T ss_pred Cc-eecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCCh
Confidence 22 211 111 244667788899999999998887655432211100 000122 23456777888999999998887
Q ss_pred eEEEEcCCCC-ccc---CeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeC
Q 016187 225 NIHVIRGHPY-HTE---GLTCLTISA--DSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSM 298 (394)
Q Consensus 225 ~~~~~~~~~~-~~~---~i~~~~~~~--~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~ 298 (394)
.+........ ... ....+..+| .+..++.++.+|.+..+|+.+|+.+=+.... ....+.. .+..++.++.
T Consensus 227 ~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~~--~~~~vy~~~~ 302 (394)
T PRK11138 227 LIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFAV--DGGRIYLVDQ 302 (394)
T ss_pred hhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcEE--ECCEEEEEcC
Confidence 6544321100 000 000111122 2456667778999999999999866443211 1111111 3456777788
Q ss_pred CCcEEEEeCCCCCcceeccC-C-CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeE-EEEccCCCE
Q 016187 299 DQKLIIWDLQHSLPRSTCDH-E-DGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQA-ISVSAHQDF 375 (394)
Q Consensus 299 dg~i~iwd~~~~~~~~~~~~-~-~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~-l~~~~~~~~ 375 (394)
+|.+..+|..+......... . ....+... .+.+|+.++.+|.|++.|..+|+.+.+++-....+.+ ..+ .+..
T Consensus 303 ~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~ 378 (394)
T PRK11138 303 NDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDK 378 (394)
T ss_pred CCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCE
Confidence 99999999876644332211 1 11111111 2567888999999999999999998877643333332 222 2457
Q ss_pred EEEEeCCCcEEEEec
Q 016187 376 LVSVSLDGTARVFEI 390 (394)
Q Consensus 376 l~s~s~dg~i~iw~~ 390 (394)
|+.++.||.+..+++
T Consensus 379 l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 379 LLIQARDGTVYAITR 393 (394)
T ss_pred EEEEeCCceEEEEeC
Confidence 888899999888765
No 285
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=6.2e-10 Score=98.09 Aligned_cols=280 Identities=18% Similarity=0.206 Sum_probs=188.3
Q ss_pred cCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCC---CeeeEeecCcccCEEEEEEcCCCCEEEEEeC-CCcEEEEeCCC
Q 016187 63 HSDEVYSVACSPTDATLVATGGGDDKGFFWRINQ---GDWASEIQGHKDSVSSLAFSMDGQLLASGGL-DGLVQIWDPSS 138 (394)
Q Consensus 63 h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~---~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~-d~~i~vwd~~~ 138 (394)
|.+.|+.+.... ..++.+++.|+.+++|.-.. -+++..+..|...|.+++.+-+|.++.|.+. |..++++|+.+
T Consensus 8 hrd~i~hv~~tk--a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 8 HRDVITHVFPTK--AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred ccceeeeEeeeh--hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 888898887654 56889999999999998533 3566677889999999999999999999887 99999999887
Q ss_pred CceEE--EEecCCCCEEEEEEcCCC---CEEEEecCCCeEEEEeCCccc--eeeeecccCcCeEEEEECCCCCeEEEEeC
Q 016187 139 GNLKC--TLEGPGGGVEWVSWHPRG---HIVLAGSEDSTVWMWNADRAA--YLNMFSGHGSSVTCGDFTPDGKTICTGSD 211 (394)
Q Consensus 139 ~~~~~--~~~~~~~~v~~~~~~~~~---~~l~~~s~d~~i~iw~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 211 (394)
..... .+....+.+.++. ++.. .+.++...++.+.++|-.... ....-.-|..+|.++.++|.+..+++...
T Consensus 86 ~DminmiKL~~lPg~a~wv~-skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~ 164 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWVT-SKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI 164 (558)
T ss_pred cchhhhcccccCCCceEEec-CCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence 65442 2222233333321 2221 233344467899999965432 22333458999999999999999999999
Q ss_pred CCcEEEEcCCC-Cc-----eEEEEc------CCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEecc---
Q 016187 212 DATLRVWNPKS-GE-----NIHVIR------GHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS--- 276 (394)
Q Consensus 212 dg~i~vwd~~~-~~-----~~~~~~------~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~--- 276 (394)
.|.|.-|.... -+ ....++ +.+-.....+++.++|++..+.+-+.|.+|++++.++|++++.+..
T Consensus 165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t 244 (558)
T KOG0882|consen 165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLT 244 (558)
T ss_pred cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccch
Confidence 99999998762 11 101111 0111223467899999999999999999999999999876554321
Q ss_pred -----------------------------CC-CCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCC-----
Q 016187 277 -----------------------------HT-DSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDG----- 321 (394)
Q Consensus 277 -----------------------------h~-~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~----- 321 (394)
|. ..-..+.|...+.+|+.++.=| |++.++.+.......+....
T Consensus 245 ~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk~e~ir~~~ 323 (558)
T KOG0882|consen 245 DAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGKDEAIRFTR 323 (558)
T ss_pred hhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEeccchhhhhhh
Confidence 10 1123456888888888876554 67777655433222211100
Q ss_pred --------------E-------EEEEEeCCCCEEEEEeCCCeEEEE
Q 016187 322 --------------V-------TCLMWLGTSKYVVTGCVDGKVRVW 346 (394)
Q Consensus 322 --------------v-------~~~~~~~~~~~l~sg~~dg~i~iw 346 (394)
. ..+.+.+|...+.++-...+.++|
T Consensus 324 ~sl~q~~~k~~~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 324 LSLYQGAQKSNLAALEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred HHHHhhhhhccchhhhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence 0 112245566677777777888888
No 286
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.18 E-value=1.2e-08 Score=84.43 Aligned_cols=207 Identities=13% Similarity=0.089 Sum_probs=141.4
Q ss_pred EEEEEcCC----CCcEEEEecCCCeEEEEEcCCCeee-EeecCcccCEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCce
Q 016187 68 YSVACSPT----DATLVATGGGDDKGFFWRINQGDWA-SEIQGHKDSVSSLAFSMD-GQLLASGGLDGLVQIWDPSSGNL 141 (394)
Q Consensus 68 ~~~~~~p~----~~~~lasg~~d~~v~~w~~~~~~~~-~~~~~h~~~V~~v~~s~~-g~~l~t~s~d~~i~vwd~~~~~~ 141 (394)
..+.|-|. .-.+||.||.-|...+|...+.+.. .....|...|+-+.=..+ ...+..++.|.++++.++..+-.
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~ 150 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN 150 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc
Confidence 34556663 1247899999999999998865432 333445444432222222 23567789999999998875544
Q ss_pred EEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcc-ce-eee-ecccCcCeEEEEECCCCCeEEEEeCCCcEEEE
Q 016187 142 KCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA-AY-LNM-FSGHGSSVTCGDFTPDGKTICTGSDDATLRVW 218 (394)
Q Consensus 142 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~-~~-~~~-~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vw 218 (394)
...+....-.+..++++++++++++.+....|..|.+... .+ .+. ...-.+.-.+..|+.....+|++.+||++.||
T Consensus 151 ~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~ 230 (344)
T KOG4532|consen 151 KFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIY 230 (344)
T ss_pred cceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEE
Confidence 3333222233788999999999999999999999988643 22 221 22233444678899999999999999999999
Q ss_pred cCCCCceEEEE--cCCCCcccCeEEEEEcCCCC--EEEEEeCCCcEEEEECCCCcEEEEe
Q 016187 219 NPKSGENIHVI--RGHPYHTEGLTCLTISADST--LALSGSKDGSVHMVNITTGKVVSSL 274 (394)
Q Consensus 219 d~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~--~l~~g~~dg~i~i~d~~~~~~~~~~ 274 (394)
|++........ ...+.|.+.++.+.|++-|. +|+..-.=+.+++.|+++++-.+.+
T Consensus 231 DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I 290 (344)
T KOG4532|consen 231 DVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVI 290 (344)
T ss_pred EecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEE
Confidence 99876543322 22344788899999998654 5555556678999999998755443
No 287
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=5.5e-08 Score=90.57 Aligned_cols=211 Identities=11% Similarity=0.066 Sum_probs=128.2
Q ss_pred CeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCE-EEEEeCC---CcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCC
Q 016187 87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQL-LASGGLD---GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162 (394)
Q Consensus 87 ~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~-l~t~s~d---~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (394)
..+.+=|.........+.+ . .+....|||||+. ++..+.. ..|.++|+.+++...... ..+......|+|+|+
T Consensus 169 ~~l~~~d~dg~~~~~~~~~-~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVKG-G-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS 245 (419)
T ss_pred ceEEEECCCCCceeEEccC-C-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence 3444444433332223333 3 7788999999985 6544433 568889998887654333 445566788999998
Q ss_pred EEE-EecCC--CeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeC-CC--cEEEEcCCCCceEEEEcCCCCcc
Q 016187 163 IVL-AGSED--STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-DA--TLRVWNPKSGENIHVIRGHPYHT 236 (394)
Q Consensus 163 ~l~-~~s~d--~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~ 236 (394)
.++ +.+.+ ..|+++++.++...+ +..+........|+|||+.|+-.+. .+ .|.+.|+.+++....... .
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~----g 320 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH----G 320 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC----C
Confidence 654 44333 568888887766433 3333332334579999998776553 33 577778877664332211 1
Q ss_pred cCeEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCC-Cc--EEE
Q 016187 237 EGLTCLTISADSTLALSGSKD---------GSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMD-QK--LII 304 (394)
Q Consensus 237 ~~i~~~~~~~~~~~l~~g~~d---------g~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~d-g~--i~i 304 (394)
. ....|+|+|+.++..+.. ..|.+.|+.++.. ..+... .......|+|+++.++..+.. +. +.+
T Consensus 321 ~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~ 396 (419)
T PRK04043 321 K--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGI 396 (419)
T ss_pred C--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEE
Confidence 1 123799999988766543 3688889887764 334332 233457899999987665533 22 444
Q ss_pred EeCCC
Q 016187 305 WDLQH 309 (394)
Q Consensus 305 wd~~~ 309 (394)
.++..
T Consensus 397 ~~l~g 401 (419)
T PRK04043 397 IRLNY 401 (419)
T ss_pred EecCC
Confidence 45443
No 288
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.15 E-value=4.4e-08 Score=84.65 Aligned_cols=222 Identities=18% Similarity=0.193 Sum_probs=140.1
Q ss_pred CCcEEEEeCCCCceEEEEecC--CCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCe
Q 016187 128 DGLVQIWDPSSGNLKCTLEGP--GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKT 205 (394)
Q Consensus 128 d~~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 205 (394)
+++|..||..+|+.+-..... ....... ..+.+..+++++.++.++.||..+++.+-.+... ..+.... ...+..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLP-GPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECS-SCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecc-cccccee-eecccc
Confidence 688999999999988766531 1222211 2335667777789999999999988876555431 1111111 224556
Q ss_pred EEEEeCCCcEEEEcCCCCceEEEE-cCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCC----
Q 016187 206 ICTGSDDATLRVWNPKSGENIHVI-RGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDS---- 280 (394)
Q Consensus 206 l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~---- 280 (394)
++.++.++.|+.+|..+|+.+... ..................+..++++..++.|..+|+++|+.+-........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~ 158 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP 158 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence 777778889999999999987763 321100011122222233778888888999999999999988776553322
Q ss_pred ------EEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEE
Q 016187 281 ------IECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCV 354 (394)
Q Consensus 281 ------i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~ 354 (394)
+..-....++ .+..++.++.+..+|+.+........ ...+.. .....+..|+.++.++.|.+||+.+|+.+
T Consensus 159 ~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 159 ISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred eeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence 1122222234 66667777754334988776443222 222222 13567788888889999999999999876
Q ss_pred E
Q 016187 355 R 355 (394)
Q Consensus 355 ~ 355 (394)
-
T Consensus 236 W 236 (238)
T PF13360_consen 236 W 236 (238)
T ss_dssp E
T ss_pred e
Confidence 4
No 289
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.15 E-value=3.3e-10 Score=105.42 Aligned_cols=237 Identities=20% Similarity=0.296 Sum_probs=156.7
Q ss_pred EEEEEEcCCC--CcEEEEecCCCeEEEEEcCCC---eeeEeecCcccCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCc
Q 016187 67 VYSVACSPTD--ATLVATGGGDDKGFFWRINQG---DWASEIQGHKDSVSSLAFSMDG-QLLASGGLDGLVQIWDPSSGN 140 (394)
Q Consensus 67 v~~~~~~p~~--~~~lasg~~d~~v~~w~~~~~---~~~~~~~~h~~~V~~v~~s~~g-~~l~t~s~d~~i~vwd~~~~~ 140 (394)
|-.+.|+|.. ...+++.+..+. .+|++... .....+.||...|+.+.|.|.. ..|++++.|..+..||+.+..
T Consensus 70 vad~qws~h~a~~~wiVsts~qka-iiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~ 148 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKA-IIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH 148 (1081)
T ss_pred hcceecccCCCCceeEEecCcchh-hhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC
Confidence 4445666542 345555554444 47887532 3345678999999999999876 579999999999999998764
Q ss_pred e-EEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcc-ceeeeecccCcCeEEEEECC-CCCeEEEEeCCCcEEE
Q 016187 141 L-KCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA-AYLNMFSGHGSSVTCGDFTP-DGKTICTGSDDATLRV 217 (394)
Q Consensus 141 ~-~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~-~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~v 217 (394)
. ......-...-..|+|+-....+++.+..+.+++||.+.+ ..+..+++|...+..++|.. --..+.+++.||+|+.
T Consensus 149 ~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkf 228 (1081)
T KOG0309|consen 149 RPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKF 228 (1081)
T ss_pred cceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceee
Confidence 3 3333333444567889887777777788899999998754 56778888999999998876 3346789999999999
Q ss_pred EcCCCCceE--EEEcCCCCcccCeEEEEEcCCC--CEEEE---------EeCCCcEEEEECCC-CcEEEEeccCCCCEEE
Q 016187 218 WNPKSGENI--HVIRGHPYHTEGLTCLTISADS--TLALS---------GSKDGSVHMVNITT-GKVVSSLVSHTDSIEC 283 (394)
Q Consensus 218 wd~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~--~~l~~---------g~~dg~i~i~d~~~-~~~~~~~~~h~~~i~~ 283 (394)
||......- +.+. ...++.--.+-|-| .++.- --.+.....|+..+ .+++.++.+|.+.|..
T Consensus 229 w~y~kSt~e~~~~vt----t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~e 304 (1081)
T KOG0309|consen 229 WDYSKSTTESKRTVT----TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLE 304 (1081)
T ss_pred ecccccccccceecc----ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHH
Confidence 997643211 1111 11122222233322 22211 11122233344433 3678999999988766
Q ss_pred EEECCC----------CCeEEEEeCCCcEEEEeCC
Q 016187 284 IGFSRS----------SPWAATGSMDQKLIIWDLQ 308 (394)
Q Consensus 284 v~~~~~----------~~~l~s~s~dg~i~iwd~~ 308 (394)
..|-.. .-.|++=|.|.++++|-+.
T Consensus 305 FlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 305 FLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred HhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 555332 2259999999999999875
No 290
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.13 E-value=5.5e-10 Score=97.12 Aligned_cols=159 Identities=14% Similarity=0.220 Sum_probs=107.4
Q ss_pred EEECCCCCeEEEEeCCCcEEEEcCCCCce-EEEEcCCCCcccCeEEEEEcCCCCEEEE---EeCCCcEEEEECCCCcEEE
Q 016187 197 GDFTPDGKTICTGSDDATLRVWNPKSGEN-IHVIRGHPYHTEGLTCLTISADSTLALS---GSKDGSVHMVNITTGKVVS 272 (394)
Q Consensus 197 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~---g~~dg~i~i~d~~~~~~~~ 272 (394)
+..++.+++||.+..+....++++..... .+.+.... .....+.+.+..+...+.. ++....+.+|....+.+ .
T Consensus 68 ~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~-~ 145 (390)
T KOG3914|consen 68 VLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC-E 145 (390)
T ss_pred cccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccCc-c
Confidence 45677888888888888877777654432 11111100 1112233333333333333 44555666676655443 3
Q ss_pred EeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC-CCcc-eeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 016187 273 SLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQH-SLPR-STCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLS 350 (394)
Q Consensus 273 ~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~-~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~ 350 (394)
.+.+|-..+..|+++||+++++++..|..|++-.... .... ...+|..-|..++..++ ..|++||.|++|++||+++
T Consensus 146 ~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~s 224 (390)
T KOG3914|consen 146 PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITS 224 (390)
T ss_pred hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEeccc
Confidence 4568999999999999999999999999999855432 2222 33579999998887655 4589999999999999999
Q ss_pred CeEEEEee
Q 016187 351 GDCVRTFS 358 (394)
Q Consensus 351 ~~~~~~~~ 358 (394)
|+++..+.
T Consensus 225 gk~L~t~d 232 (390)
T KOG3914|consen 225 GKLLDTCD 232 (390)
T ss_pred CCcccccc
Confidence 99987654
No 291
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.12 E-value=1.1e-09 Score=95.21 Aligned_cols=151 Identities=17% Similarity=0.168 Sum_probs=108.0
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCc----EEEEeccCCCCEEEEEECCCCCeEEEE---eCCCcEEEEeCCCCCcce
Q 016187 242 LTISADSTLALSGSKDGSVHMVNITTGK----VVSSLVSHTDSIECIGFSRSSPWAATG---SMDQKLIIWDLQHSLPRS 314 (394)
Q Consensus 242 ~~~~~~~~~l~~g~~dg~i~i~d~~~~~----~~~~~~~h~~~i~~v~~~~~~~~l~s~---s~dg~i~iwd~~~~~~~~ 314 (394)
+..++.+++++++..+....+++..... ++.... -...-+++.|..+......+ +....+.+|.......+.
T Consensus 68 ~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~ 146 (390)
T KOG3914|consen 68 VLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEP 146 (390)
T ss_pred cccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccCcch
Confidence 3456778888888888877777765432 222221 12223344444444444433 344455566555566677
Q ss_pred eccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEe-ecccCceeEEEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 315 TCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTF-SGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 315 ~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
..+|-..++.++++||+++|+++..|..|++-.....-.+..| -||+..|..++..++ ..|+|+|.|+++++|++..+
T Consensus 147 ~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sg 225 (390)
T KOG3914|consen 147 ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSG 225 (390)
T ss_pred hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEecccC
Confidence 7899999999999999999999999999999876655556665 489999999999765 45899999999999999876
Q ss_pred C
Q 016187 394 K 394 (394)
Q Consensus 394 ~ 394 (394)
|
T Consensus 226 k 226 (390)
T KOG3914|consen 226 K 226 (390)
T ss_pred C
Confidence 5
No 292
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.12 E-value=3.8e-08 Score=87.66 Aligned_cols=213 Identities=14% Similarity=0.213 Sum_probs=144.7
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCceEEEEec-C-----CC-----CEEEEE-EcC-CCCEEEEecCCCeEEEEeCCccc
Q 016187 116 SMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG-P-----GG-----GVEWVS-WHP-RGHIVLAGSEDSTVWMWNADRAA 182 (394)
Q Consensus 116 s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~-~-----~~-----~v~~~~-~~~-~~~~l~~~s~d~~i~iw~~~~~~ 182 (394)
+.||+.++ -+..|.|.++|..+.++...--+ + .. +...+. |++ +|.+++..|. |...+.+...+.
T Consensus 275 nsDGkrIv-Fq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~ 352 (668)
T COG4946 275 NSDGKRIV-FQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGY 352 (668)
T ss_pred CCCCcEEE-EecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCe
Confidence 45777664 34567899999887654321111 0 00 111111 232 4677777665 555565555554
Q ss_pred eeeeecccCcCeEEEEECCCCCeEEEEeCCC-cEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEE
Q 016187 183 YLNMFSGHGSSVTCGDFTPDGKTICTGSDDA-TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVH 261 (394)
Q Consensus 183 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~ 261 (394)
.++. +|...|.-..+.-+++-++.|..|| .+-|+|..+++.-...+ .-+.|..+..+++|++++++.....|.
T Consensus 353 ~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~----~lg~I~av~vs~dGK~~vvaNdr~el~ 426 (668)
T COG4946 353 SIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK----DLGNIEAVKVSPDGKKVVVANDRFELW 426 (668)
T ss_pred eEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC----CccceEEEEEcCCCcEEEEEcCceEEE
Confidence 4443 5777788888888888899999999 89999998876433322 345689999999999999999999999
Q ss_pred EEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCC----cEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEE
Q 016187 262 MVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQ----KLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVT 336 (394)
Q Consensus 262 i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 336 (394)
+.|+.+++...--+...+-|....|+|+++|+|-+--+| .|+++|+..............=.+-+|.|++++|.-
T Consensus 427 vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYf 505 (668)
T COG4946 427 VIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYF 505 (668)
T ss_pred EEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEE
Confidence 999999987655556678899999999999999876655 689999876543322211111123366777776654
No 293
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.11 E-value=9.1e-07 Score=76.85 Aligned_cols=217 Identities=18% Similarity=0.190 Sum_probs=143.1
Q ss_pred EEEEEcC-CCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEEC-CCCCeEEEEeCCCcEEEEcCCCCceEEEEc
Q 016187 153 EWVSWHP-RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFT-PDGKTICTGSDDATLRVWNPKSGENIHVIR 230 (394)
Q Consensus 153 ~~~~~~~-~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 230 (394)
..+.|.+ ++.++++-...+.|+.|+..++.... +.... ...+++. +++ .|+.+... .+.++|+.+++......
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG-RLYVADSG-GIAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS-EEEEEETT-CEEEEETTTTEEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC-EEEEEEcC-ceEEEecCCCcEEEEee
Confidence 3567887 66677777788999999998776433 22222 5667777 565 45555544 45566988875443333
Q ss_pred C--CCCcccCeEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEE-EEeCC
Q 016187 231 G--HPYHTEGLTCLTISADSTLALSGSKD--------GSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAA-TGSMD 299 (394)
Q Consensus 231 ~--~~~~~~~i~~~~~~~~~~~l~~g~~d--------g~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~-s~s~d 299 (394)
. ........+.+++.|+|++.++.... |.|..++.. ++.. .+...-...+.++|+|+++.|+ +-+..
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~-~~~~~~~~pNGi~~s~dg~~lyv~ds~~ 155 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVT-VVADGLGFPNGIAFSPDGKTLYVADSFN 155 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEE-EEEEEESSEEEEEEETTSSEEEEEETTT
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEE-EEecCcccccceEECCcchheeeccccc
Confidence 2 11123457789999999988876644 567778877 5433 3333345678999999998765 66777
Q ss_pred CcEEEEeCCCCCc-----ceecc--CC-CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEc-
Q 016187 300 QKLIIWDLQHSLP-----RSTCD--HE-DGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVS- 370 (394)
Q Consensus 300 g~i~iwd~~~~~~-----~~~~~--~~-~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~- 370 (394)
++|..|++..... +.... .. ...-.+++..++++.++.-..+.|.+++.. |+.+..+.--...+++++|.
T Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg 234 (246)
T PF08450_consen 156 GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGG 234 (246)
T ss_dssp TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEES
T ss_pred ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEEC
Confidence 8888888753221 11111 11 236778999999988888889999999987 99888887555588999994
Q ss_pred cCCCEEE
Q 016187 371 AHQDFLV 377 (394)
Q Consensus 371 ~~~~~l~ 377 (394)
++.+.|.
T Consensus 235 ~~~~~L~ 241 (246)
T PF08450_consen 235 PDGKTLY 241 (246)
T ss_dssp TTSSEEE
T ss_pred CCCCEEE
Confidence 5655443
No 294
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.08 E-value=9.5e-09 Score=86.68 Aligned_cols=240 Identities=18% Similarity=0.356 Sum_probs=158.6
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-----eEEEEecCC------------CCEEEEEEcCCC--CEEEE
Q 016187 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN-----LKCTLEGPG------------GGVEWVSWHPRG--HIVLA 166 (394)
Q Consensus 106 h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~--~~l~~ 166 (394)
..+.|+++.|...|.||++|...|.|.++.-.... ....+++|. ..|..+.|..++ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45779999999999999999999999999754332 112233332 246677777654 35667
Q ss_pred ecCCCeEEEEeCCccc--------------------e-----------------e-----eee-cccCcCeEEEEECCCC
Q 016187 167 GSEDSTVWMWNADRAA--------------------Y-----------------L-----NMF-SGHGSSVTCGDFTPDG 203 (394)
Q Consensus 167 ~s~d~~i~iw~~~~~~--------------------~-----------------~-----~~~-~~h~~~v~~~~~~~~~ 203 (394)
.+.|.+|++|.+.... . + +.+ ..|..-+.++.|..|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 7899999999764320 0 0 011 3566778889999988
Q ss_pred CeEEEEeCCCcEEEEcCCCCceEE---EEcCCCC--cccCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCcE------E
Q 016187 204 KTICTGSDDATLRVWNPKSGENIH---VIRGHPY--HTEGLTCLTISAD-STLALSGSKDGSVHMVNITTGKV------V 271 (394)
Q Consensus 204 ~~l~s~~~dg~i~vwd~~~~~~~~---~~~~~~~--~~~~i~~~~~~~~-~~~l~~g~~dg~i~i~d~~~~~~------~ 271 (394)
+.++++ .|-.|.+|++....... -++.+.. ...-|++..|+|. ...+...+..|.|++-|++...+ +
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 888775 56789999986543222 2222211 1234777888885 45667788899999999985321 1
Q ss_pred EE----------eccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC-Ccceec-c------------CCCCE---EE
Q 016187 272 SS----------LVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHS-LPRSTC-D------------HEDGV---TC 324 (394)
Q Consensus 272 ~~----------~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~-~------------~~~~v---~~ 324 (394)
.. +.+-...|..+.|+++++++++-+. -+++|||.... .+.... - ..+.| ..
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe 342 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE 342 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence 11 1112356889999999999987654 57999998642 222211 1 12223 34
Q ss_pred EEEeCCCCEEEEEeCCCeEEEEE
Q 016187 325 LMWLGTSKYVVTGCVDGKVRVWD 347 (394)
Q Consensus 325 ~~~~~~~~~l~sg~~dg~i~iwd 347 (394)
+.|+.+...+++|+.....-++-
T Consensus 343 isfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 343 ISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred EEecCCcccccccccccceeeec
Confidence 67888889999998888777775
No 295
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.04 E-value=4.3e-07 Score=76.34 Aligned_cols=238 Identities=16% Similarity=0.212 Sum_probs=139.4
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCC--ce--EEEE-ecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeee
Q 016187 113 LAFSMDGQLLASGGLDGLVQIWDPSSG--NL--KCTL-EGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF 187 (394)
Q Consensus 113 v~~s~~g~~l~t~s~d~~i~vwd~~~~--~~--~~~~-~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~ 187 (394)
++.+.+|+.||.- .|..|.|-..+.. .. .+.+ +.+...-+.++|+|++.+||.+...|+|+++|+........-
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~ 81 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIP 81 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcC
Confidence 5677889888755 5677777654432 11 2222 223344577999999999999999999999998754332211
Q ss_pred ccc------CcCeEEEEECCCC------CeEEEEeCCCcEEEEcCCCC-----ceEEEEcCCCCcccCeEEEEEcCCCCE
Q 016187 188 SGH------GSSVTCGDFTPDG------KTICTGSDDATLRVWNPKSG-----ENIHVIRGHPYHTEGLTCLTISADSTL 250 (394)
Q Consensus 188 ~~h------~~~v~~~~~~~~~------~~l~s~~~dg~i~vwd~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~ 250 (394)
.++ ...|..+.|.+.. ..|+.-...|.++-|-+..+ +..+.+........+|+++.++|.-++
T Consensus 82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~L 161 (282)
T PF15492_consen 82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRL 161 (282)
T ss_pred cccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCE
Confidence 111 2455666665421 24666677888887765332 333444443445678999999999888
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeE--EEEeCCC------cEEEEeCCCCCc-ceeccCCCC
Q 016187 251 ALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWA--ATGSMDQ------KLIIWDLQHSLP-RSTCDHEDG 321 (394)
Q Consensus 251 l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l--~s~s~dg------~i~iwd~~~~~~-~~~~~~~~~ 321 (394)
|++|+.... ..+. -.+-...+++=.+-.+.++. ++...|+ +..+|.+-.... .........
T Consensus 162 LlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~ 231 (282)
T PF15492_consen 162 LLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDG 231 (282)
T ss_pred EEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCc
Confidence 887764322 0000 00111122222222222211 1111111 112233221100 011223567
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeeccc
Q 016187 322 VTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHR 361 (394)
Q Consensus 322 v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~ 361 (394)
|..+..+|++..||+...+|.|.+|++.+-++.++++-+.
T Consensus 232 i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~e 271 (282)
T PF15492_consen 232 IFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDE 271 (282)
T ss_pred eEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhh
Confidence 8999999999999999999999999999888887766444
No 296
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.04 E-value=1.8e-07 Score=77.55 Aligned_cols=244 Identities=13% Similarity=0.022 Sum_probs=156.5
Q ss_pred CcEEEEeCCCCc--eEEEEecCCCCEEEEEEcC-----CCCEEEEecCCCeEEEEeCCccc-eeeeecccCcCeEEEEEC
Q 016187 129 GLVQIWDPSSGN--LKCTLEGPGGGVEWVSWHP-----RGHIVLAGSEDSTVWMWNADRAA-YLNMFSGHGSSVTCGDFT 200 (394)
Q Consensus 129 ~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~-----~~~~l~~~s~d~~i~iw~~~~~~-~~~~~~~h~~~v~~~~~~ 200 (394)
..+.+|+.-+.. .+... +.+.|.| ...+|+.|+..|.+.+|...+.+ ..+....|...|+-+.=.
T Consensus 52 ~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~ 124 (344)
T KOG4532|consen 52 ISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRY 124 (344)
T ss_pred eeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhh
Confidence 456777765433 22222 2244555 33588999999999999987543 333344444333211111
Q ss_pred CC-CCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC--cEEE-Eecc
Q 016187 201 PD-GKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG--KVVS-SLVS 276 (394)
Q Consensus 201 ~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~--~~~~-~~~~ 276 (394)
.+ .-.+..++.|.++++.++..+.....+.. ..-.+.++.++++++++++-+....|..|.+... ..+. ....
T Consensus 125 cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~---~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~ 201 (344)
T KOG4532|consen 125 CDLKFPLNIASNDHTGKTMVVSGDSNKFAVHN---QNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAP 201 (344)
T ss_pred cccccceeeccCCcceeEEEEecCcccceeec---cccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecc
Confidence 11 22466778899999998765443222211 1123788999999999999999999999988643 2333 2233
Q ss_pred CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc------ceeccCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEEC
Q 016187 277 HTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLP------RSTCDHEDGVTCLMWLGTSK--YVVTGCVDGKVRVWDS 348 (394)
Q Consensus 277 h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~------~~~~~~~~~v~~~~~~~~~~--~l~sg~~dg~i~iwd~ 348 (394)
-++.-.+..|+.....+|++..||++.|||++.... ...-.|.+.+..+.|++.|. +|+-.-.-+.+.+.|+
T Consensus 202 t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~ 281 (344)
T KOG4532|consen 202 TSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDT 281 (344)
T ss_pred cCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEc
Confidence 345566788999999999999999999999875321 11234788899999998653 4444444578999999
Q ss_pred CCCeEEEEee-------ccc-CceeEEEEccCCCEEEEEeCC
Q 016187 349 LSGDCVRTFS-------GHR-DAIQAISVSAHQDFLVSVSLD 382 (394)
Q Consensus 349 ~~~~~~~~~~-------~h~-~~v~~l~~~~~~~~l~s~s~d 382 (394)
++++..+.+. .|. ..|..-.|+.++..+.+...+
T Consensus 282 R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 282 RNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL 323 (344)
T ss_pred ccCceeeEEecCccccccccccccccccccCCCcccccccch
Confidence 9987665432 222 337777777766655544443
No 297
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.01 E-value=3.8e-07 Score=78.75 Aligned_cols=219 Identities=18% Similarity=0.165 Sum_probs=137.0
Q ss_pred CCeEEEEEcCCCeeeEeecC---cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCC
Q 016187 86 DDKGFFWRINQGDWASEIQG---HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH 162 (394)
Q Consensus 86 d~~v~~w~~~~~~~~~~~~~---h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (394)
++++..||..+++.+-...- ....+ +. ..+++.++++++.++.|..||..+|+.+........ +.... ...+.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~-~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~~~-~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPV-AT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP-ISGAP-VVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEE-ET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSC-GGSGE-EEETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCcc-ce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc-cccee-eeccc
Confidence 56778888888876655532 22222 11 233567788889999999999999998877664222 11111 22345
Q ss_pred EEEEecCCCeEEEEeCCccceeeee-cccC---cCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcc-c
Q 016187 163 IVLAGSEDSTVWMWNADRAAYLNMF-SGHG---SSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHT-E 237 (394)
Q Consensus 163 ~l~~~s~d~~i~iw~~~~~~~~~~~-~~h~---~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~ 237 (394)
.++.++.++.++.+|..+++.+... .... ...........+..++.+..++.|..+|+++|+.+.......... .
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSS 157 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCc
Confidence 5666668889999999988877653 2221 111122222347888888889999999999999877665422111 1
Q ss_pred ------CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC
Q 016187 238 ------GLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSL 311 (394)
Q Consensus 238 ------~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~ 311 (394)
.+..-.+..++ .++.++.++.+..+|+.+++.+-+.. ...+... ....+..|+.++.++.+..||+++..
T Consensus 158 ~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 158 PISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp -EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTE
T ss_pred ceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 12222233344 77777777764444999998654332 2223221 34566777877799999999998765
Q ss_pred c
Q 016187 312 P 312 (394)
Q Consensus 312 ~ 312 (394)
.
T Consensus 234 ~ 234 (238)
T PF13360_consen 234 V 234 (238)
T ss_dssp E
T ss_pred E
Confidence 4
No 298
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.00 E-value=5.8e-07 Score=83.77 Aligned_cols=200 Identities=12% Similarity=0.042 Sum_probs=121.9
Q ss_pred CeEEEEeCCccceeeeecccCcCeEEEEECCCCCe-EEEEeC---CCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcC
Q 016187 171 STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKT-ICTGSD---DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA 246 (394)
Q Consensus 171 ~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~ 246 (394)
..|.+-|..... .+.+.... ....-.|+|+|+. ++..+. ...|.++|+.+++...... .........|+|
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~----~~g~~~~~~~SP 242 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS----SQGMLVVSDVSK 242 (419)
T ss_pred ceEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec----CCCcEEeeEECC
Confidence 345554544332 22222223 6677899999985 554333 3468889998887544332 123345678999
Q ss_pred CCCEEEE-EeC--CCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeC-CC--cEEEEeCCCCCcceeccCCC
Q 016187 247 DSTLALS-GSK--DGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSM-DQ--KLIIWDLQHSLPRSTCDHED 320 (394)
Q Consensus 247 ~~~~l~~-g~~--dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~ 320 (394)
||+.++. .+. +..|.++|+.+++. ..+..+........|+|+++.++-.+. .+ .|.+.|+.....+.......
T Consensus 243 DG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~ 321 (419)
T PRK04043 243 DGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK 321 (419)
T ss_pred CCCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC
Confidence 9986654 333 35688889877763 344444333334579999987766553 34 46667776654433222111
Q ss_pred CEEEEEEeCCCCEEEEEeCC---------CeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeC
Q 016187 321 GVTCLMWLGTSKYVVTGCVD---------GKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSL 381 (394)
Q Consensus 321 ~v~~~~~~~~~~~l~sg~~d---------g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~ 381 (394)
....|+|++++|+..+.. ..|.+.|+.++.. +.++... ......|+|||+.|+-.+.
T Consensus 322 --~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~~-~~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 322 --NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTANG-VNQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred --cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCCC-CcCCeEECCCCCEEEEEEc
Confidence 124899999988876543 3688889887764 4454332 3346889999998776554
No 299
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.99 E-value=2.3e-06 Score=72.07 Aligned_cols=229 Identities=16% Similarity=0.181 Sum_probs=125.1
Q ss_pred EEEcCCCCEEEEecCCCeEEEEeCCcc--ceeeeeccc---CcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEE
Q 016187 155 VSWHPRGHIVLAGSEDSTVWMWNADRA--AYLNMFSGH---GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVI 229 (394)
Q Consensus 155 ~~~~~~~~~l~~~s~d~~i~iw~~~~~--~~~~~~~~h---~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 229 (394)
++.+.+|++||. -+|..|.|=..+.. ..+...+-. ...-..++|+||+..||.+...|+|+++|+.. ..+..+
T Consensus 3 ~~~~~~Gk~lAi-~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAI-LQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVI 80 (282)
T ss_pred eeecCCCcEEEE-EeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEc
Confidence 344556665544 45666665543321 111222212 22346789999999999999999999999864 444444
Q ss_pred cCCCC----cccCeEEEEEcCC------CCEEEEEeCCCcEEEEECCC-----CcEEEE--ecc-CCCCEEEEEECCCCC
Q 016187 230 RGHPY----HTEGLTCLTISAD------STLALSGSKDGSVHMVNITT-----GKVVSS--LVS-HTDSIECIGFSRSSP 291 (394)
Q Consensus 230 ~~~~~----~~~~i~~~~~~~~------~~~l~~g~~dg~i~i~d~~~-----~~~~~~--~~~-h~~~i~~v~~~~~~~ 291 (394)
..... ....|..+.|-+- ...|++-...|.++-+-+.. .+...+ +.. +...|.++.++|..+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 32110 1223444444321 12455555667666555422 122222 322 367899999999988
Q ss_pred eEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEE--EEEeCCCe------EEEEECCCCeEEEEeecccCc
Q 016187 292 WAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYV--VTGCVDGK------VRVWDSLSGDCVRTFSGHRDA 363 (394)
Q Consensus 292 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l--~sg~~dg~------i~iwd~~~~~~~~~~~~h~~~ 363 (394)
+|+.|+.... +. ........++++=....+..+. ++...|+. -.+|.+.+.+...........
T Consensus 161 LLlVgG~~~~------~~---~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~ 231 (282)
T PF15492_consen 161 LLLVGGCEQN------QD---GMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDG 231 (282)
T ss_pred EEEEeccCCC------CC---ccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCc
Confidence 8777764322 00 0000111222222222222111 12222221 233443333332222334567
Q ss_pred eeEEEEccCCCEEEEEeCCCcEEEEeccCCC
Q 016187 364 IQAISVSAHQDFLVSVSLDGTARVFEIADFK 394 (394)
Q Consensus 364 v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~~ 394 (394)
|..|..|||+..||+..-.|.|.+|++..++
T Consensus 232 i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 232 IFKMSLSPDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred eEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence 9999999999999999999999999998754
No 300
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.98 E-value=6.4e-10 Score=105.59 Aligned_cols=263 Identities=16% Similarity=0.207 Sum_probs=175.3
Q ss_pred eEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCC--eEEEEe
Q 016187 100 ASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDS--TVWMWN 177 (394)
Q Consensus 100 ~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~--~i~iw~ 177 (394)
..+++.|...-+|++|+-+.++|+.|+..|.|+++++.+|.......+|..+|+-+.-+.+|..+++.+... -..+|+
T Consensus 1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhc
Confidence 356778999999999999999999999999999999999999888999999999999888998777766544 356898
Q ss_pred CCc-cceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEE-EcCCCCcccCeEEEEEcCCCCEEEEEe
Q 016187 178 ADR-AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHV-IRGHPYHTEGLTCLTISADSTLALSGS 255 (394)
Q Consensus 178 ~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~g~ 255 (394)
... +.....|. .-.++.|+...+.-+.|..-....+||+.++..+.+ +.+.......-++..|+|+..+++
T Consensus 1174 ~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl--- 1246 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL--- 1246 (1516)
T ss_pred cccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---
Confidence 754 23333332 335678887655545555556788999999876554 222111222346788999999887
Q ss_pred CCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEE
Q 016187 256 KDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVV 335 (394)
Q Consensus 256 ~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 335 (394)
.||. +||.+..+.++.+...+..+.. .|+|+|.-++..+ .|||+++.........- .-+.+.|+..|..+.
T Consensus 1247 ndGv--LWDvR~~~aIh~FD~ft~~~~G-~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~L-dqc~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1247 NDGV--LWDVRIPEAIHRFDQFTDYGGG-GFHPSGNEVIINS-----EIWDMRTFKLLHSVPSL-DQCAVTFNSTGDVMY 1317 (1516)
T ss_pred eCce--eeeeccHHHHhhhhhheecccc-cccCCCceEEeec-----hhhhhHHHHHHhcCccc-cceEEEeccCccchh
Confidence 4553 6999988777666544433322 4899998887765 58999875332211100 113445655554332
Q ss_pred EEe-----------C--C----CeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEE
Q 016187 336 TGC-----------V--D----GKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSV 379 (394)
Q Consensus 336 sg~-----------~--d----g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~ 379 (394)
+.- . + ...+-|+...-..+.++.+ ...|..++-.|...++..-
T Consensus 1318 a~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v-~R~~~Dlct~~~D~~l~vI 1377 (1516)
T KOG1832|consen 1318 AMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPV-DRCLLDLCTEPTDSFLGVI 1377 (1516)
T ss_pred hhhhhhhhhhhhcccccccchhhhhccccccccccceeeec-ccchhhhhcCCccceEEEE
Confidence 221 0 0 1234455555666666665 3456777777777776653
No 301
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.97 E-value=2.1e-09 Score=64.01 Aligned_cols=39 Identities=51% Similarity=0.854 Sum_probs=37.2
Q ss_pred CeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 351 GDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 351 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
|++++++.+|.+.|++|+|+|++++|+|++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 468899999999999999999999999999999999997
No 302
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.94 E-value=3.2e-09 Score=63.18 Aligned_cols=38 Identities=42% Similarity=0.843 Sum_probs=36.2
Q ss_pred eeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 016187 98 DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135 (394)
Q Consensus 98 ~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd 135 (394)
+++.++++|.++|++|+|+|++.+|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56788999999999999999999999999999999997
No 303
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.94 E-value=4e-06 Score=72.70 Aligned_cols=227 Identities=15% Similarity=0.209 Sum_probs=145.7
Q ss_pred EEEEEcCCCCcEEEEecCCCe-EEEEEcCCCeeeEeecCcccCE--EEEEEcCCCCEEEEEeCC-----CcEEEEeCC-C
Q 016187 68 YSVACSPTDATLVATGGGDDK-GFFWRINQGDWASEIQGHKDSV--SSLAFSMDGQLLASGGLD-----GLVQIWDPS-S 138 (394)
Q Consensus 68 ~~~~~~p~~~~~lasg~~d~~-v~~w~~~~~~~~~~~~~h~~~V--~~v~~s~~g~~l~t~s~d-----~~i~vwd~~-~ 138 (394)
..++.+|.....+|-+-.-++ ..+||..+++....+....+.- ---.||+||++|+|.-.| |.|-|||.. +
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence 356778866666776666555 4679998888776553221111 014699999999987544 789999998 5
Q ss_pred CceEEEEecCCCCEEEEEEcCCCCEEEEec------------------CCCeEEEEeCCccceeee--e--cccCcCeEE
Q 016187 139 GNLKCTLEGPGGGVEWVSWHPRGHIVLAGS------------------EDSTVWMWNADRAAYLNM--F--SGHGSSVTC 196 (394)
Q Consensus 139 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s------------------~d~~i~iw~~~~~~~~~~--~--~~h~~~v~~ 196 (394)
.+.+..+..+.-....+.+.|+++.|+.+- ++.++...|..+++.+.. + .-|..++..
T Consensus 88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH 167 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH 167 (305)
T ss_pred cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee
Confidence 556667766655566788999997666542 233455556667776655 3 337778999
Q ss_pred EEECCCCCeEEEEeCCCc-------EEEEcCCCCceEEEEcCCC----CcccCeEEEEEcCCCCEEE-EEeCCCcEEEEE
Q 016187 197 GDFTPDGKTICTGSDDAT-------LRVWNPKSGENIHVIRGHP----YHTEGLTCLTISADSTLAL-SGSKDGSVHMVN 264 (394)
Q Consensus 197 ~~~~~~~~~l~s~~~dg~-------i~vwd~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~-~g~~dg~i~i~d 264 (394)
+++.++|..++..-..|. |-+++. ++.+..+.... .....+-++++++++..++ ++-..+.+.+||
T Consensus 168 La~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d 245 (305)
T PF07433_consen 168 LAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWD 245 (305)
T ss_pred EEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEE
Confidence 999999876666544332 233332 22222222110 1234688999999998765 455778999999
Q ss_pred CCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCC
Q 016187 265 ITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMD 299 (394)
Q Consensus 265 ~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~d 299 (394)
..+++.+....- ..+..++-.+++ +++|.+..
T Consensus 246 ~~tg~~~~~~~l--~D~cGva~~~~~-f~~ssG~G 277 (305)
T PF07433_consen 246 AATGRLLGSVPL--PDACGVAPTDDG-FLVSSGQG 277 (305)
T ss_pred CCCCCEeecccc--CceeeeeecCCc-eEEeCCCc
Confidence 999998866532 344556666655 66665543
No 304
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.94 E-value=7e-06 Score=71.24 Aligned_cols=240 Identities=17% Similarity=0.234 Sum_probs=138.2
Q ss_pred EEEEEcC-CCCEEEEEeCCCc-EEEEeCCCCceEEEEecCCCCE--EEEEEcCCCCEEEEecC-----CCeEEEEeCC-c
Q 016187 111 SSLAFSM-DGQLLASGGLDGL-VQIWDPSSGNLKCTLEGPGGGV--EWVSWHPRGHIVLAGSE-----DSTVWMWNAD-R 180 (394)
Q Consensus 111 ~~v~~s~-~g~~l~t~s~d~~-i~vwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~s~-----d~~i~iw~~~-~ 180 (394)
..++.+| .+..++.+-.-|+ ..+||..+++....+....+.- -...|+++|++|++.-. .|.|-+||.. +
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence 3678888 4556667766665 5689999998887665443322 13689999999988643 4789999998 5
Q ss_pred cceeeeecccCcCeEEEEECCCCCeEEEEe------------------CCCcEEEEcCCCCceEEEEcCC-CCcccCeEE
Q 016187 181 AAYLNMFSGHGSSVTCGDFTPDGKTICTGS------------------DDATLRVWNPKSGENIHVIRGH-PYHTEGLTC 241 (394)
Q Consensus 181 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~------------------~dg~i~vwd~~~~~~~~~~~~~-~~~~~~i~~ 241 (394)
-+.+..+..|.-....+.+.|||+.|+.+- .+-++.+-|..+|+.+...... ..|...++.
T Consensus 88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH 167 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH 167 (305)
T ss_pred cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee
Confidence 567778888877777888999998887763 2223333444444443332211 112334555
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCC
Q 016187 242 LTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDG 321 (394)
Q Consensus 242 ~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 321 (394)
+++.++|..++..-..|-- ....++++.-..++.+......... .......
T Consensus 168 La~~~~G~V~~a~Q~qg~~--------------------------~~~~PLva~~~~g~~~~~~~~p~~~---~~~l~~Y 218 (305)
T PF07433_consen 168 LAVDGDGTVAFAMQYQGDP--------------------------GDAPPLVALHRRGGALRLLPAPEEQ---WRRLNGY 218 (305)
T ss_pred EEecCCCcEEEEEecCCCC--------------------------CccCCeEEEEcCCCcceeccCChHH---HHhhCCc
Confidence 5555554443332221100 0011223333333333333322111 1122345
Q ss_pred EEEEEEeCCCCEEEEEe-CCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCC
Q 016187 322 VTCLMWLGTSKYVVTGC-VDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLD 382 (394)
Q Consensus 322 v~~~~~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d 382 (394)
+-++++++++.++++.| ..+.+.+||..+++++....-.. +-.|+-.+++ +++|.+..
T Consensus 219 ~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D--~cGva~~~~~-f~~ssG~G 277 (305)
T PF07433_consen 219 IGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPD--ACGVAPTDDG-FLVSSGQG 277 (305)
T ss_pred eEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCc--eeeeeecCCc-eEEeCCCc
Confidence 77888888887775554 46678888888888877654322 3355555554 55554443
No 305
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=5.9e-09 Score=89.08 Aligned_cols=159 Identities=14% Similarity=0.219 Sum_probs=119.6
Q ss_pred EEcCC--CCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcc----ceeeee
Q 016187 114 AFSMD--GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA----AYLNMF 187 (394)
Q Consensus 114 ~~s~~--g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~----~~~~~~ 187 (394)
+|+-+ |-. ++.+.+..|-+-++.+|-... +. ..+.|.+..|+..+++++.|...|.|..+|++.. ......
T Consensus 218 awSlni~gyh-fs~G~sqqv~L~nvetg~~qs-f~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQQS-FQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred hhhhccceee-ecccccceeEEEEeecccccc-cc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 56543 323 566677788888888875432 22 5567888999999999999999999999999754 112223
Q ss_pred cccCcCeEEEEECC-CCCeEEEEeCCCcEEEEcCCCCce---EEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 016187 188 SGHGSSVTCGDFTP-DGKTICTGSDDATLRVWNPKSGEN---IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMV 263 (394)
Q Consensus 188 ~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~ 263 (394)
-.|.+.|+++.... ++++|++.+.+|+|++||.+--++ +....+|......+ -+-+.+....+++++.|-..+||
T Consensus 295 lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l-~~~v~~eeg~I~s~GdDcytRiW 373 (425)
T KOG2695|consen 295 LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYL-PAHVKEEEGSIFSVGDDCYTRIW 373 (425)
T ss_pred EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccc-ccccccccceEEEccCeeEEEEE
Confidence 35899999998776 788999999999999999986665 66666654322222 23456778889999999999999
Q ss_pred ECCCCcEEEEecc
Q 016187 264 NITTGKVVSSLVS 276 (394)
Q Consensus 264 d~~~~~~~~~~~~ 276 (394)
.+..+.++.++..
T Consensus 374 sl~~ghLl~tipf 386 (425)
T KOG2695|consen 374 SLDSGHLLCTIPF 386 (425)
T ss_pred ecccCceeeccCC
Confidence 9999999888754
No 306
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=2.3e-07 Score=87.90 Aligned_cols=185 Identities=15% Similarity=0.170 Sum_probs=130.0
Q ss_pred CCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEE
Q 016187 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC 143 (394)
Q Consensus 64 ~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~ 143 (394)
.+.++|++++ ...||-|..+|.+++.+.+. .. .+...|... ..+|.+++|||.||+|.|-.+-+.+..+
T Consensus 39 ~D~is~~av~---~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH---DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhHHHHHHhh---cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 4567777776 35788999999999988643 32 344445544 6789999999999999999988887766
Q ss_pred EEecCCCCEEEEEEcCC-----CCEEEEecCCCeEEEEeCCcc--ceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEE
Q 016187 144 TLEGPGGGVEWVSWHPR-----GHIVLAGSEDSTVWMWNADRA--AYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLR 216 (394)
Q Consensus 144 ~~~~~~~~v~~~~~~~~-----~~~l~~~s~d~~i~iw~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~ 216 (394)
++. -+.++..++++|+ .+.+++|+.-| +.++.-+=. +.........++|.++.|. |+++|-++.+| |+
T Consensus 108 ~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~ 182 (846)
T KOG2066|consen 108 QYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VK 182 (846)
T ss_pred eEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cE
Confidence 554 3467899999997 56899999888 777653211 1111234456789999885 77888888777 89
Q ss_pred EEcCCCCceEEEEcCCCC---cccCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 016187 217 VWNPKSGENIHVIRGHPY---HTEGLTCLTISADSTLALSGSKDGSVHMVNIT 266 (394)
Q Consensus 217 vwd~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~ 266 (394)
+||+.+++.+..+..... .......+.|.++.++++ |...+|++..++
T Consensus 183 vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI--GW~d~v~i~~I~ 233 (846)
T KOG2066|consen 183 VYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI--GWGDSVKICSIK 233 (846)
T ss_pred EEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE--ecCCeEEEEEEe
Confidence 999998887766543211 111233567776665544 345578888776
No 307
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.90 E-value=1.7e-06 Score=80.69 Aligned_cols=264 Identities=14% Similarity=0.082 Sum_probs=154.8
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceEEEEecCCC--CEE-----EEEEcC--CCCEEEEecCCCeEEEEeCCccceeeeecc
Q 016187 119 GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGG--GVE-----WVSWHP--RGHIVLAGSEDSTVWMWNADRAAYLNMFSG 189 (394)
Q Consensus 119 g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~--~v~-----~~~~~~--~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~ 189 (394)
+..+++++.++.+.-+|..+|+.+-....... ... .+.-.| .+..++.++.++.++.+|.++++.+-....
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 148 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKV 148 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccC
Confidence 55777788888999999999987765443220 000 000011 245677788899999999998886654433
Q ss_pred cCcCeEE-EEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCc--ccCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 016187 190 HGSSVTC-GDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYH--TEGLTCLTISADSTLALSGSKDGSVHMVNIT 266 (394)
Q Consensus 190 h~~~v~~-~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~ 266 (394)
.. .+.+ -.+ .+..++.+..++.|.-+|..+|+.+-........ .....+-.+ .+..++.++.+|.+..+|..
T Consensus 149 ~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~ 223 (394)
T PRK11138 149 AG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLME 223 (394)
T ss_pred CC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEcc
Confidence 22 1211 111 2456777888999999999999977665421100 000000011 12356677889999999999
Q ss_pred CCcEEEEeccCCC-------CEEEEEECC--CCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEE
Q 016187 267 TGKVVSSLVSHTD-------SIECIGFSR--SSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTG 337 (394)
Q Consensus 267 ~~~~~~~~~~h~~-------~i~~v~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg 337 (394)
+|+.+-+...... ....+..+| .+..++.++.+|.+..+|+.+............ ..+. ..+..|+.+
T Consensus 224 ~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~--~~~~~vy~~ 300 (394)
T PRK11138 224 QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSV-NDFA--VDGGRIYLV 300 (394)
T ss_pred CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCCc-cCcE--EECCEEEEE
Confidence 8876543221000 000111122 244566777889999999887654443221111 1111 245678888
Q ss_pred eCCCeEEEEECCCCeEEEEeecccC-ceeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 338 CVDGKVRVWDSLSGDCVRTFSGHRD-AIQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 338 ~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
+.+|.+..+|..+|+.+-+...-.. ...+..+ .+.+|+.++.||.+...|..+
T Consensus 301 ~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~t 354 (394)
T PRK11138 301 DQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINRED 354 (394)
T ss_pred cCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCC
Confidence 8999999999999987654332111 1222222 245677788889888887654
No 308
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.88 E-value=6.6e-08 Score=79.74 Aligned_cols=249 Identities=18% Similarity=0.179 Sum_probs=138.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceE------------EEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEe
Q 016187 110 VSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK------------CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177 (394)
Q Consensus 110 V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~------------~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~ 177 (394)
|+.+.|+.+ -.|+++..++.+.......+.+. ..+..+.++-.+-..+-.++-++++..||.+.+++
T Consensus 39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 555556543 34566666666655543332221 22222222211222233356789999999999998
Q ss_pred CCccce-eeee-cccCcCeEEEEECCCCCeEEEEeC-----CCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCC-CC
Q 016187 178 ADRAAY-LNMF-SGHGSSVTCGDFTPDGKTICTGSD-----DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD-ST 249 (394)
Q Consensus 178 ~~~~~~-~~~~-~~h~~~v~~~~~~~~~~~l~s~~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~ 249 (394)
.+.-.. ...+ ..|.+.. +..+...++.+.++.. -+..+.|+++-.+ .+.........+++++-+|. ++
T Consensus 118 ~~~~~~~~~~i~~~~~~~a-s~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~---t~~~~~~~~~~v~~l~~hp~qq~ 193 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSGSA-SRKICRHGNSILSGGCGNWNAQDNFYANTLDPIK---TLIPSKKALDAVTALCSHPAQQH 193 (319)
T ss_pred chHHHhhhhhccccccccc-ccceeecccEEecCCcceEeeccceeeecccccc---cccccccccccchhhhCCccccc
Confidence 765211 1111 1121111 1122223444444321 2234455543222 22211122345888888885 45
Q ss_pred EEEEEeCCCcEEEEECCCCc-EEEEeccCCCCEEEEEECCCC-CeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEE
Q 016187 250 LALSGSKDGSVHMVNITTGK-VVSSLVSHTDSIECIGFSRSS-PWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMW 327 (394)
Q Consensus 250 ~l~~g~~dg~i~i~d~~~~~-~~~~~~~h~~~i~~v~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~ 327 (394)
++++|+.||.+-+||.+... +...+..|..+|..+.|+|.. ..|++++.||.+.-||..+... ..
T Consensus 194 ~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l-------------~i 260 (319)
T KOG4714|consen 194 LVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFL-------------SI 260 (319)
T ss_pred EEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceE-------------Ee
Confidence 67788999999999998874 344567899999999999864 5799999999999999764211 11
Q ss_pred eCCCCEEEEEeCCCeEEEEECCCCeEEEE-------eecccCceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 328 LGTSKYVVTGCVDGKVRVWDSLSGDCVRT-------FSGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 328 ~~~~~~l~sg~~dg~i~iwd~~~~~~~~~-------~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
+++ ...+..|= .+..++. +..-...|+++.. .|+.|++|++-+.|++++
T Consensus 261 ~~~---------~s~~s~WL--sgD~v~s~i~i~~ll~~~~~SinsfDV--~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 261 SNQ---------ASVISSWL--SGDPVKSRIEITSLLPSRSLSINSFDV--LGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred cCc---------cccccccc--cCCcccceEeeeccccccceeeeeeec--cCceEEeccccceEEEec
Confidence 111 12344441 2222211 1222334555443 568899999999998875
No 309
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.87 E-value=8.2e-08 Score=79.18 Aligned_cols=164 Identities=21% Similarity=0.297 Sum_probs=102.3
Q ss_pred eeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCe-eeEeecC-cccCEEEEEEcCCCCEEEEEeC-----CC
Q 016187 57 THIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGD-WASEIQG-HKDSVSSLAFSMDGQLLASGGL-----DG 129 (394)
Q Consensus 57 ~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~-~~~~~~~-h~~~V~~v~~s~~g~~l~t~s~-----d~ 129 (394)
...|..|+++-.+-+.+-. .+-+++++.|+.+.+.+.+... ....+.. |.+ -.+.++-..++.+.++.. -+
T Consensus 82 ~~~~a~~sep~p~~~~s~~-~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d 159 (319)
T KOG4714|consen 82 FKVLAKNSEIDPNDACTMT-DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQD 159 (319)
T ss_pred eeeeeccCCCCCccccccc-CCceEecCCCceEEEEechHHHhhhhhccccccc-ccccceeecccEEecCCcceEeecc
Confidence 3444455544333333322 3457889999999999875411 0111111 111 112222234444444432 23
Q ss_pred cEEEEeCCCCceEEEEecCCCCEEEEEEcCC-CCEEEEecCCCeEEEEeCCccce-eeeecccCcCeEEEEECC-CCCeE
Q 016187 130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPR-GHIVLAGSEDSTVWMWNADRAAY-LNMFSGHGSSVTCGDFTP-DGKTI 206 (394)
Q Consensus 130 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~s~d~~i~iw~~~~~~~-~~~~~~h~~~v~~~~~~~-~~~~l 206 (394)
..+.|++...+.+.........|.+++-+|. .+++++|+.||.+-+||.+.... ...+..|..++..+-|+| ++..|
T Consensus 160 ~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~L 239 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHL 239 (319)
T ss_pred ceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhe
Confidence 5566766544333222223345888888885 45778899999999999987643 345778999999999999 67899
Q ss_pred EEEeCCCcEEEEcCCC
Q 016187 207 CTGSDDATLRVWNPKS 222 (394)
Q Consensus 207 ~s~~~dg~i~vwd~~~ 222 (394)
++++.||.+..||..+
T Consensus 240 ft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 240 FTCSEDGSLWHWDAST 255 (319)
T ss_pred eEecCCCcEEEEcCCC
Confidence 9999999999999754
No 310
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=9.1e-09 Score=87.97 Aligned_cols=161 Identities=16% Similarity=0.186 Sum_probs=119.2
Q ss_pred EEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----ceEE
Q 016187 68 YSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSG----NLKC 143 (394)
Q Consensus 68 ~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~----~~~~ 143 (394)
+.++|+-...-+-++.|.+-.+-+-+++++-. +.|. .+..|.++.|...+.++..|..+|.|.+.|+..+ ....
T Consensus 215 ~~CawSlni~gyhfs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a 292 (425)
T KOG2695|consen 215 WSCAWSLNIMGYHFSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA 292 (425)
T ss_pred hhhhhhhccceeeecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce
Confidence 33455532222224556677777888877643 2333 5677999999999999999999999999999765 2222
Q ss_pred EEecCCCCEEEEEEcC-CCCEEEEecCCCeEEEEeCCccce---eeeecccCcCeEEE--EECCCCCeEEEEeCCCcEEE
Q 016187 144 TLEGPGGGVEWVSWHP-RGHIVLAGSEDSTVWMWNADRAAY---LNMFSGHGSSVTCG--DFTPDGKTICTGSDDATLRV 217 (394)
Q Consensus 144 ~~~~~~~~v~~~~~~~-~~~~l~~~s~d~~i~iw~~~~~~~---~~~~~~h~~~v~~~--~~~~~~~~l~s~~~dg~i~v 217 (394)
..--|...|+++..-. ++.+|++.+.+|.|.+||.+-.++ +..+.||...-.-+ -..+....++++++|-..|+
T Consensus 293 ~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRi 372 (425)
T KOG2695|consen 293 QRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRI 372 (425)
T ss_pred EEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEE
Confidence 3334778888888766 678899999999999999876655 88899996543333 34566778899999999999
Q ss_pred EcCCCCceEEEEc
Q 016187 218 WNPKSGENIHVIR 230 (394)
Q Consensus 218 wd~~~~~~~~~~~ 230 (394)
|.++.+..+.++.
T Consensus 373 Wsl~~ghLl~tip 385 (425)
T KOG2695|consen 373 WSLDSGHLLCTIP 385 (425)
T ss_pred EecccCceeeccC
Confidence 9999998776654
No 311
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.86 E-value=2.3e-09 Score=101.88 Aligned_cols=219 Identities=17% Similarity=0.244 Sum_probs=155.6
Q ss_pred CceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCC--cEE
Q 016187 55 DSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG--LVQ 132 (394)
Q Consensus 55 ~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~--~i~ 132 (394)
.+-..|..|+...+|++|+- +.+.|+.|+..|.++++++.+|.......+|..+|+-+.-+.||..+++.+.-. -..
T Consensus 1092 r~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred ccchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence 45566778999999999997 456788899999999999999999999999999999999999999877766544 356
Q ss_pred EEeCCC-CceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeee-cc---cCcCeEEEEECCCCCeEE
Q 016187 133 IWDPSS-GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF-SG---HGSSVTCGDFTPDGKTIC 207 (394)
Q Consensus 133 vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~-~~---h~~~v~~~~~~~~~~~l~ 207 (394)
+|++.+ +...+++.. -.++.|+.....-+.|..-....+||+++...+.++ .+ ....-+++.|+|+.++++
T Consensus 1171 LW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred HhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 899764 344455443 346788876544455555567889999987655542 22 222336788999888775
Q ss_pred EEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEEC
Q 016187 208 TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFS 287 (394)
Q Consensus 208 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~ 287 (394)
- || .+||++..+.++.+....... .-.|+|.|.-++..+. |||+++-+.+++...-. -..|.|+
T Consensus 1247 n---dG--vLWDvR~~~aIh~FD~ft~~~----~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld--qc~VtFN 1310 (1516)
T KOG1832|consen 1247 N---DG--VLWDVRIPEAIHRFDQFTDYG----GGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD--QCAVTFN 1310 (1516)
T ss_pred e---Cc--eeeeeccHHHHhhhhhheecc----cccccCCCceEEeech-----hhhhHHHHHHhcCcccc--ceEEEec
Confidence 3 44 379999887766654322111 2258899998887764 89999988776543221 2346677
Q ss_pred CCCCeEE
Q 016187 288 RSSPWAA 294 (394)
Q Consensus 288 ~~~~~l~ 294 (394)
..|..+.
T Consensus 1311 stG~VmY 1317 (1516)
T KOG1832|consen 1311 STGDVMY 1317 (1516)
T ss_pred cCccchh
Confidence 7776554
No 312
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.84 E-value=2.2e-05 Score=75.11 Aligned_cols=274 Identities=15% Similarity=0.171 Sum_probs=152.9
Q ss_pred EEEecCCCeEEEEEcCCCeeeEeecCccc------CEE--EEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCC
Q 016187 80 VATGGGDDKGFFWRINQGDWASEIQGHKD------SVS--SLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG 151 (394)
Q Consensus 80 lasg~~d~~v~~w~~~~~~~~~~~~~h~~------~V~--~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~ 151 (394)
+..++.++.+.-.|..+++.+-...-... .+. .+... ++..++.++.++.|.-+|..+|+.+-........
T Consensus 64 vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~ 142 (488)
T cd00216 64 MYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQV 142 (488)
T ss_pred EEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCCCc
Confidence 33456678888888888876544432211 110 11111 2257778888999999999999988665533210
Q ss_pred --EEEEEEcC--CCCEEEEec---------CCCeEEEEeCCccceeeeecccCc--------------------Ce-EEE
Q 016187 152 --VEWVSWHP--RGHIVLAGS---------EDSTVWMWNADRAAYLNMFSGHGS--------------------SV-TCG 197 (394)
Q Consensus 152 --v~~~~~~~--~~~~l~~~s---------~d~~i~iw~~~~~~~~~~~~~h~~--------------------~v-~~~ 197 (394)
-..+.-+| .+..++.++ .++.++.+|..+++.+-.+..... .+ ...
T Consensus 143 ~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~p 222 (488)
T cd00216 143 PPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASP 222 (488)
T ss_pred CcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCe
Confidence 00011111 123444544 367888889888876544332110 01 123
Q ss_pred EECCCCCeEEEEeCCC------------------cEEEEcCCCCceEEEEcCCCC--cc-cC---eEEEEEc-CCCC---
Q 016187 198 DFTPDGKTICTGSDDA------------------TLRVWNPKSGENIHVIRGHPY--HT-EG---LTCLTIS-ADST--- 249 (394)
Q Consensus 198 ~~~~~~~~l~s~~~dg------------------~i~vwd~~~~~~~~~~~~~~~--~~-~~---i~~~~~~-~~~~--- 249 (394)
++.+.+..++.++.++ .|.-.|..+|+..-....... .. .. ....... -++.
T Consensus 223 a~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~ 302 (488)
T cd00216 223 TYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVP 302 (488)
T ss_pred eEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeE
Confidence 4445566777777665 688899999987765432110 00 00 0001110 1233
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEE------------------eCCCcEEEEeCCCCC
Q 016187 250 LALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATG------------------SMDQKLIIWDLQHSL 311 (394)
Q Consensus 250 ~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~------------------s~dg~i~iwd~~~~~ 311 (394)
.+++++.+|.+..+|.++|+.+-+.... ...++.+| ..+..+ ..+|.+.-.|+.+..
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~ 377 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK 377 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCc
Confidence 6788889999999999999877543211 01122333 112111 134566666666554
Q ss_pred cceeccCC---------CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeec
Q 016187 312 PRSTCDHE---------DGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSG 359 (394)
Q Consensus 312 ~~~~~~~~---------~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 359 (394)
........ .....-.....+..|+.|+.||.|+.+|..+|+.+-+++-
T Consensus 378 ~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 378 VVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred EeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 43322211 1110000112457889999999999999999999988764
No 313
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1.5e-07 Score=83.37 Aligned_cols=247 Identities=13% Similarity=0.127 Sum_probs=166.4
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC--C-ceEEEEecCCCCEEEEEEcCCCCEEEEecC-CCeEEEEeCCcc
Q 016187 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS--G-NLKCTLEGPGGGVEWVSWHPRGHIVLAGSE-DSTVWMWNADRA 181 (394)
Q Consensus 106 h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~-d~~i~iw~~~~~ 181 (394)
|.+.|+-+..+ -.+++.+++.||.++.|.... | +.+..+..|-+.+..++.+-++.++.+.+. |..++++|+.+-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 88888777554 357899999999999997543 1 223334456677888888889999999777 999999998764
Q ss_pred ceeeeeccc--CcCeEEEEECCCC---CeEEEEeCCCcEEEEcCCCCce-EEEEcCCCCcccCeEEEEEcCCCCEEEEEe
Q 016187 182 AYLNMFSGH--GSSVTCGDFTPDG---KTICTGSDDATLRVWNPKSGEN-IHVIRGHPYHTEGLTCLTISADSTLALSGS 255 (394)
Q Consensus 182 ~~~~~~~~h--~~~v~~~~~~~~~---~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~ 255 (394)
..+..++-. ...+. ...+|.. ..-++.-.++.+.++|-....+ ....+ ..|..+|.++.+.+.+..+++..
T Consensus 87 DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk--klH~sPV~~i~y~qa~Ds~vSiD 163 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK--KLHFSPVKKIRYNQAGDSAVSID 163 (558)
T ss_pred chhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceec--ccccCceEEEEeeccccceeecc
Confidence 433222211 11111 1122211 2233445678999999775543 22222 24778999999999999999999
Q ss_pred CCCcEEEEECCC------CcEEEEec---------cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCccee-----
Q 016187 256 KDGSVHMVNITT------GKVVSSLV---------SHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRST----- 315 (394)
Q Consensus 256 ~dg~i~i~d~~~------~~~~~~~~---------~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~----- 315 (394)
..|.|..|.... .++...+. -......++.|+|++..+++-+.|.+|+++++++......
T Consensus 164 ~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~ 243 (558)
T KOG0882|consen 164 ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVL 243 (558)
T ss_pred ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccc
Confidence 999999999863 11111111 1234567899999999999999999999998765321110
Q ss_pred ----------c------------------cCCC-CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Q 016187 316 ----------C------------------DHED-GVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTF 357 (394)
Q Consensus 316 ----------~------------------~~~~-~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 357 (394)
. .|.. .-+.+.|...+++|+-|+.=| |++.++.++.+++.+
T Consensus 244 t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 244 TDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred hhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence 0 1111 124567888889998887665 888998888877654
No 314
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.83 E-value=1.9e-07 Score=88.86 Aligned_cols=265 Identities=16% Similarity=0.208 Sum_probs=157.4
Q ss_pred EEEcCCCCEEEEEeC----CCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeec
Q 016187 113 LAFSMDGQLLASGGL----DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS 188 (394)
Q Consensus 113 v~~s~~g~~l~t~s~----d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~ 188 (394)
..|+|...+||.++. .|+|.|| ..+|++...+..+ -.+++++|||..-+|+.|-.-|.+.+|...+.+.-....
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P-~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~ 98 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTYP-VHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVE 98 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccccc-eehhhhccChHHHHHhhccccceeEEEecCCceeeeecc
Confidence 468888888888764 4788888 4566644332221 124569999999889999999999999998877666677
Q ss_pred ccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCC-Cc-------------e--EEEEcCCCC--------------cccC
Q 016187 189 GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS-GE-------------N--IHVIRGHPY--------------HTEG 238 (394)
Q Consensus 189 ~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~-------------~--~~~~~~~~~--------------~~~~ 238 (394)
.|..++..+.|+++|..++++..-|.|.+|.... |+ . +..++...- ....
T Consensus 99 th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~a 178 (1416)
T KOG3617|consen 99 THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESA 178 (1416)
T ss_pred CCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhh
Confidence 8999999999999999999999999999997541 11 0 011110000 0000
Q ss_pred e------------EE--EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEecc----------CCCCEEEEEE-CCCCCeE
Q 016187 239 L------------TC--LTISADSTLALSGSKDGSVHMVNITTGKVVSSLVS----------HTDSIECIGF-SRSSPWA 293 (394)
Q Consensus 239 i------------~~--~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~----------h~~~i~~v~~-~~~~~~l 293 (394)
+ .+ -.-.|+|..++.++.+|+|+..|-. |++...... ..+.|.++.- -.+.-++
T Consensus 179 lD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~-g~~~~V~k~dS~vQmLf~~~~eai~~i~e~lr~~l~~ 257 (1416)
T KOG3617|consen 179 LDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQN-GRQRTVHKLDSEVQMLFMGYCEAISIIIEFLRDCLIF 257 (1416)
T ss_pred hcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCC-CcEEEEEEccchHHHHHhcccceEEEEeeeceeeEEE
Confidence 0 00 1124678888899999999988843 333222111 1122222111 0000000
Q ss_pred E-----------------EEeCCCcEEEEeCC---CCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE-CCC--
Q 016187 294 A-----------------TGSMDQKLIIWDLQ---HSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWD-SLS-- 350 (394)
Q Consensus 294 ~-----------------s~s~dg~i~iwd~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd-~~~-- 350 (394)
+ .|+..|.|..=... ......-......++|++++..+..|..|...|++.+|- +..
T Consensus 258 v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f 337 (1416)
T KOG3617|consen 258 VLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGF 337 (1416)
T ss_pred ecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccc
Confidence 0 01111111110000 001111122345799999999999999999999999994 222
Q ss_pred ----CeEEEEee---cccCceeEEEEccCCCEEEEEe
Q 016187 351 ----GDCVRTFS---GHRDAIQAISVSAHQDFLVSVS 380 (394)
Q Consensus 351 ----~~~~~~~~---~h~~~v~~l~~~~~~~~l~s~s 380 (394)
+.-.-.+. .-.+.|..+.|+|-.+.++.-+
T Consensus 338 ~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~ 374 (1416)
T KOG3617|consen 338 QGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNT 374 (1416)
T ss_pred cCCCCcceEEecCchhhccceEEEEeccccchhhhhh
Confidence 12222333 2346788899988655544433
No 315
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.82 E-value=6e-08 Score=81.97 Aligned_cols=234 Identities=13% Similarity=0.216 Sum_probs=140.8
Q ss_pred CCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccc-----eeeeecccCc------------CeEEEEECCCC--CeEEEE
Q 016187 149 GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-----YLNMFSGHGS------------SVTCGDFTPDG--KTICTG 209 (394)
Q Consensus 149 ~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~-----~~~~~~~h~~------------~v~~~~~~~~~--~~l~s~ 209 (394)
...|+++-|...|.+|++|...|.+.+|.-+... ....+++|.. .|..+.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 3568899999999999999999999999765432 2334566643 35566666543 356677
Q ss_pred eCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC------cEEE-EeccCCCCEE
Q 016187 210 SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG------KVVS-SLVSHTDSIE 282 (394)
Q Consensus 210 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~------~~~~-~~~~h~~~i~ 282 (394)
+.|++|++|.+... .++.+.... ...++ -+|-+.-+.+ -..|++-.+... ++.+ ....|.-.|+
T Consensus 106 tNdktiKlWKiyek-nlk~va~nn-ls~~~----~~~~~g~~~s---~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiN 176 (460)
T COG5170 106 TNDKTIKLWKIYEK-NLKVVAENN-LSDSF----HSPMGGPLTS---TKELLLPRLSEHDEIIAAKPCRVYANAHPYHIN 176 (460)
T ss_pred cCCceeeeeeeecc-cchhhhccc-ccccc----ccccCCCcCC---HHHhhcccccccceEEEeccceeccccceeEee
Confidence 88999999998643 222221110 00000 0111110000 000111111000 0011 1145788899
Q ss_pred EEEECCCCCeEEEEeCCCcEEEEeCCCCCcce----ecc-----CCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCe
Q 016187 283 CIGFSRSSPWAATGSMDQKLIIWDLQHSLPRS----TCD-----HEDGVTCLMWLGTSK-YVVTGCVDGKVRVWDSLSGD 352 (394)
Q Consensus 283 ~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~----~~~-----~~~~v~~~~~~~~~~-~l~sg~~dg~i~iwd~~~~~ 352 (394)
++.|..+...++++ .|=+|.+|++...-... ... ....|++..|+|... .+.-.+..|.|++-|++...
T Consensus 177 SiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~a 255 (460)
T COG5170 177 SISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSA 255 (460)
T ss_pred eeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhh
Confidence 99999999888876 47789999875321111 111 123577888888754 45556778999999987322
Q ss_pred E------EE----------EeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 353 C------VR----------TFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 353 ~------~~----------~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
+ +. -|++-...|..+.|+++|+|+++-+. -+++|||+..-
T Consensus 256 lcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~ 311 (460)
T COG5170 256 LCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMA 311 (460)
T ss_pred hccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccc
Confidence 1 11 12233456889999999999987764 57999998753
No 316
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.73 E-value=8.9e-05 Score=61.80 Aligned_cols=141 Identities=11% Similarity=0.087 Sum_probs=84.4
Q ss_pred CCcEEEEecCCCeEEEEEcCCCeeeE--eecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEE
Q 016187 76 DATLVATGGGDDKGFFWRINQGDWAS--EIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVE 153 (394)
Q Consensus 76 ~~~~lasg~~d~~v~~w~~~~~~~~~--~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~ 153 (394)
.+.++.-|+..+.+.--|..+|++.- .+.+. -.-.++. -|.+++.|.+.|.+.+.+.++|.....+..-..-=.
T Consensus 22 skT~v~igSHs~~~~avd~~sG~~~We~ilg~R-iE~sa~v---vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~ 97 (354)
T KOG4649|consen 22 SKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVR-IECSAIV---VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKV 97 (354)
T ss_pred CceEEEEecCCceEEEecCCCCcEEeehhhCce-eeeeeEE---ECCEEEEEEccCcEEEEEecchhheeeeeehhhhcc
Confidence 34566666777776666666665442 22211 1111222 377899999999999999999976555443221111
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcC
Q 016187 154 WVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNP 220 (394)
Q Consensus 154 ~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 220 (394)
.....+++.++..|+.|++++..|..+..++...+-.++...+=++.|-...|..+...|.|.--..
T Consensus 98 ~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~ 164 (354)
T KOG4649|consen 98 RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTK 164 (354)
T ss_pred ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEcc
Confidence 2345678889999999999999999988777664433333333344552223333444454443333
No 317
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.73 E-value=3e-05 Score=73.62 Aligned_cols=183 Identities=13% Similarity=0.044 Sum_probs=114.2
Q ss_pred ECCCCCeEE-EEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCC----CcEEEEECCCCcEEEE
Q 016187 199 FTPDGKTIC-TGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD----GSVHMVNITTGKVVSS 273 (394)
Q Consensus 199 ~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~d----g~i~i~d~~~~~~~~~ 273 (394)
+.|||+.+. +.-..+.+.+.|..+.+....+.. ......+.++|+++++++.+.+ .++...+......+..
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V----dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vv 275 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV----DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVV 275 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEe----CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEE
Confidence 456676553 233346677888877665544432 1234557889999998887632 2333333222111111
Q ss_pred eccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC-----CCcceeccCCCCEEEEEEeCCCCEEEEEe-CCCeEEEEE
Q 016187 274 LVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQH-----SLPRSTCDHEDGVTCLMWLGTSKYVVTGC-VDGKVRVWD 347 (394)
Q Consensus 274 ~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~dg~i~iwd 347 (394)
+.- ..+ .++.+++++... .+++|.+.|.++ ........-......+.++||++++++++ .+.+|.|.|
T Consensus 276 fni--~~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVID 349 (635)
T PRK02888 276 FNI--ARI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVID 349 (635)
T ss_pred Ech--HHH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEE
Confidence 100 000 123446766554 367899999887 33333344455677889999999887765 488999999
Q ss_pred CCCCeE------------EEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 348 SLSGDC------------VRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 348 ~~~~~~------------~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
+.+.+. +.+..--.++ ...+|.++|+.+.|.-.|..|..|+++.
T Consensus 350 v~k~k~~~~~~~~~~~~vvaevevGlGP-LHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 350 VRKLDDLFDGKIKPRDAVVAEPELGLGP-LHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ChhhhhhhhccCCccceEEEeeccCCCc-ceEEECCCCCEEEeEeecceeEEEehHH
Confidence 877542 3344433344 4788999999999999999999999864
No 318
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.71 E-value=5.5e-07 Score=86.51 Aligned_cols=181 Identities=17% Similarity=0.257 Sum_probs=134.7
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEE
Q 016187 118 DGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCG 197 (394)
Q Consensus 118 ~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~ 197 (394)
++..++-|+-...+..+|+.+.+......-..+.|.-++. +++++.+|...|+|.+-|.++.+.++.+..|.+.+..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD- 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD- 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceee-
Confidence 4556777877788888999888776665544445665554 4678999999999999999999999999999999875
Q ss_pred EECCCCCeEEEEeC---------CCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEEC--
Q 016187 198 DFTPDGKTICTGSD---------DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISAD-STLALSGSKDGSVHMVNI-- 265 (394)
Q Consensus 198 ~~~~~~~~l~s~~~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~g~~dg~i~i~d~-- 265 (394)
|.-.|+.|++|+. |..|+|||++..+.+..+.. +.. ..-+.|.|. ...+++.+..|...+.|.
T Consensus 223 -fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~---~~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ 297 (1118)
T KOG1275|consen 223 -FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF---PYG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTAT 297 (1118)
T ss_pred -eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCccc---ccC-chhhhhcccccceEEEEecccceeeccccc
Confidence 5557899999874 67889999987665543332 211 234556664 356778888999999983
Q ss_pred -CCCcE-EEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEe
Q 016187 266 -TTGKV-VSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWD 306 (394)
Q Consensus 266 -~~~~~-~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd 306 (394)
.+... +..+......+.++.+++++..+|.|..+|.|.+|.
T Consensus 298 lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 298 LSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 32211 222223345599999999999999999999999997
No 319
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=3.2e-06 Score=74.17 Aligned_cols=253 Identities=12% Similarity=0.123 Sum_probs=144.8
Q ss_pred EEEEeCCCCceEEEEecCCCCEEEEEEcCCCC-EEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCC-CCeEEE
Q 016187 131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPD-GKTICT 208 (394)
Q Consensus 131 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s 208 (394)
+++.+..+.+....+..+...|..++|+|..+ ++..++.+..|.+.|+++......+..+ ..+++++|.-+ .+++..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 66666666555556677778899999999887 7889999999999999999888888877 67888899875 467889
Q ss_pred EeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEE------EEcCCCCEEEEEeCCCcEEEEECCC--C--cEEEEeccCC
Q 016187 209 GSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCL------TISADSTLALSGSKDGSVHMVNITT--G--KVVSSLVSHT 278 (394)
Q Consensus 209 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~------~~~~~~~~l~~g~~dg~i~i~d~~~--~--~~~~~~~~h~ 278 (394)
|-..|.|.+||++..+.............+|..+ ...+-+.+++....+ +..|++.- + .++..+ +..
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlel-e~p 330 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLEL-EPP 330 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCccccc-CCC
Confidence 9999999999998654321110000011122222 233345555544433 33444321 1 111111 112
Q ss_pred CCEEEEEECCCCCeEE-EEeC-----------------CCcEEEEeCCCCCcc-ee-ccCCCCEEEEEEeCCCCEEE-EE
Q 016187 279 DSIECIGFSRSSPWAA-TGSM-----------------DQKLIIWDLQHSLPR-ST-CDHEDGVTCLMWLGTSKYVV-TG 337 (394)
Q Consensus 279 ~~i~~v~~~~~~~~l~-s~s~-----------------dg~i~iwd~~~~~~~-~~-~~~~~~v~~~~~~~~~~~l~-sg 337 (394)
+...+++.++....++ +--. || --+|..+..... .. ..+. -..+.-.++.++|+ .|
T Consensus 331 G~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG-~pVc~~r~~~~Gs~~~kl~t--~~ai~~~~~nn~iv~~g 407 (463)
T KOG1645|consen 331 GICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDG-FPVCGKRRTYFGSKQTKLST--TQAIRAVEDNNYIVVVG 407 (463)
T ss_pred cceeeeeecCccceEEEEecCCCCCccceeeeeeeccccC-ceeeeecccccCCccccccc--ccceeccccccEEEEec
Confidence 3334444444333322 2111 11 111111110000 00 0000 01122234455554 45
Q ss_pred eCCCeEEEEECCCCeEEEEeecccCceeEEEEcc-CC-CEEEEEeCCCcEEEEeccC
Q 016187 338 CVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSA-HQ-DFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 338 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~-~~-~~l~s~s~dg~i~iw~~~~ 392 (394)
.....+.+||..+++.++++.- ..+|.++.... ++ .||+.-. |..++||+.+.
T Consensus 408 d~tn~lil~D~~s~evvQ~l~~-~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~es 462 (463)
T KOG1645|consen 408 DSTNELILQDPHSFEVVQTLAL-SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNES 462 (463)
T ss_pred CCcceeEEeccchhheeeeccc-CcceeecceeecCCcchhhhee-cceEEEEecCC
Confidence 5667899999999999998875 47888876653 33 4555444 66688887653
No 320
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=1.3e-05 Score=76.99 Aligned_cols=208 Identities=13% Similarity=0.164 Sum_probs=137.4
Q ss_pred EEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcC-eEEEEECCCCCeEEEEeCCC-----cEEEEcCCCC------
Q 016187 156 SWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSS-VTCGDFTPDGKTICTGSDDA-----TLRVWNPKSG------ 223 (394)
Q Consensus 156 ~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~------ 223 (394)
+|++.+..++.|+.+|.|.+.+-. .+.++.++.+... |..+....+..+|++.+.|+ .|++|++..-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 567888899999999999888753 2334566666655 44443344446788777665 4899998532
Q ss_pred ceE--EEEcCCC--CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECC--CCcEEEE--eccCCCCEEEEEECCCCCeEEE
Q 016187 224 ENI--HVIRGHP--YHTEGLTCLTISADSTLALSGSKDGSVHMVNIT--TGKVVSS--LVSHTDSIECIGFSRSSPWAAT 295 (394)
Q Consensus 224 ~~~--~~~~~~~--~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~--~~~~~~~--~~~h~~~i~~v~~~~~~~~l~s 295 (394)
+++ +.+..+. ....++.+++++.+-+.+++|-.+|.|..+.-. ..+-.+. .....++|+.+++..++..++-
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 233 1222222 235678899999999999999999999988421 1111111 2234679999999988876444
Q ss_pred EeCCCcEEEEeCCCCCcce--eccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEee-cccCcee
Q 016187 296 GSMDQKLIIWDLQHSLPRS--TCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFS-GHRDAIQ 365 (394)
Q Consensus 296 ~s~dg~i~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~ 365 (394)
+..-..|.+|.+....+.. ...|...+.|..+++....++.++ +.-+++|+....+.--.|. ||.....
T Consensus 189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~~~ 260 (933)
T KOG2114|consen 189 VATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKKEML 260 (933)
T ss_pred EEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCeEEEE
Confidence 4456679999998554332 234556788888887655344443 4569999987666666777 7765443
No 321
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.59 E-value=1.6e-06 Score=83.37 Aligned_cols=182 Identities=16% Similarity=0.229 Sum_probs=131.1
Q ss_pred cEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEE
Q 016187 78 TLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSW 157 (394)
Q Consensus 78 ~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 157 (394)
..+.-||-...+...|+++.+..+...--...|+-|. .++++|.+|...|+|.+-|+++.+..+++..|.+.+. .|
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS--Df 223 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS--DF 223 (1118)
T ss_pred cceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeecccccee--ee
Confidence 3444556556666677776665555443333465555 4578999999999999999999999999999999886 45
Q ss_pred cCCCCEEEEecC---------CCeEEEEeCCccceeeeecccCcCeEEEEECCC-CCeEEEEeCCCcEEEEcCCCCce--
Q 016187 158 HPRGHIVLAGSE---------DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPD-GKTICTGSDDATLRVWNPKSGEN-- 225 (394)
Q Consensus 158 ~~~~~~l~~~s~---------d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~-- 225 (394)
.-+|++|++|+. |..+++||++..+.+.-+.-+.++ .-+.|+|. ...++.++..|...+-|+.+-..
T Consensus 224 Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~ 302 (1118)
T KOG1275|consen 224 DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP 302 (1118)
T ss_pred eccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCc
Confidence 667889998875 456789999877665555444443 34678884 56788899999999999433211
Q ss_pred EEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 016187 226 IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI 265 (394)
Q Consensus 226 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~ 265 (394)
......++ ....+..+.+++++..++.|..+|.|.+|--
T Consensus 303 ~~~~~v~p-~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 303 AGVKMVNP-NGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred cceeEEcc-CCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 11111112 2345899999999999999999999999973
No 322
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.58 E-value=6.6e-05 Score=74.96 Aligned_cols=235 Identities=14% Similarity=0.169 Sum_probs=137.6
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCC----ccce
Q 016187 108 DSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD----RAAY 183 (394)
Q Consensus 108 ~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~----~~~~ 183 (394)
+.|.++.|..++..++.+...|.|.+-|..+..... ...-..+|.+++|+|+...++..+...++.+-.-. ..+.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence 589999999999999999999999999988775432 23345679999999999999888888887764321 1111
Q ss_pred e-eeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEE-----eCC
Q 016187 184 L-NMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSG-----SKD 257 (394)
Q Consensus 184 ~-~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g-----~~d 257 (394)
+ ..... .+....+-|-.....+ -|+ .|....-+..... +.+... .....-+++.|-.||.++++. ..-
T Consensus 148 L~~d~~~-~sk~v~VGwGrkeTqf-rgs-~gr~~~~~~~~~e--k~~~~~-~~~~~~~~IsWRgDg~~fAVs~~~~~~~~ 221 (1265)
T KOG1920|consen 148 LDADDER-KSKFVNVGWGRKETQF-RGS-EGRQAARQKIEKE--KALEQI-EQDDHKTSISWRGDGEYFAVSFVESETGT 221 (1265)
T ss_pred ccccccc-ccccceecccccceee-ecc-hhhhccccccccc--ccccch-hhccCCceEEEccCCcEEEEEEEeccCCc
Confidence 1 00000 0111122222211111 111 1111111111000 000100 012234568899999998873 233
Q ss_pred CcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEE---eCCCcEEEEeCCC---CCcceec-cCCCCEEEEEEeCC
Q 016187 258 GSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATG---SMDQKLIIWDLQH---SLPRSTC-DHEDGVTCLMWLGT 330 (394)
Q Consensus 258 g~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~---s~dg~i~iwd~~~---~~~~~~~-~~~~~v~~~~~~~~ 330 (394)
..|++||-. |.+-..-......=.+++|-|.|.++|+- ..|+.|.+|.-.. +...... .....+..++|+.+
T Consensus 222 RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~ 300 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSN 300 (1265)
T ss_pred eeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCC
Confidence 799999976 44322222223334578999999998875 3466788886432 2111111 12233889999999
Q ss_pred CCEEEE---EeCCCeEEEEECCC
Q 016187 331 SKYVVT---GCVDGKVRVWDSLS 350 (394)
Q Consensus 331 ~~~l~s---g~~dg~i~iwd~~~ 350 (394)
+..|++ ......|++|-+.+
T Consensus 301 sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 301 SDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred CCceeeeecccccceEEEEEecC
Confidence 999887 45555699997543
No 323
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.55 E-value=0.00032 Score=64.41 Aligned_cols=281 Identities=17% Similarity=0.149 Sum_probs=148.1
Q ss_pred CCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEE-EEecC----------------
Q 016187 86 DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC-TLEGP---------------- 148 (394)
Q Consensus 86 d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~-~~~~~---------------- 148 (394)
.+...++|+++++....... ...+....|||+|+.+|-.. ++.|.+++..++.... +..+.
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv 99 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEV 99 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHT
T ss_pred ceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccc
Confidence 35688999999876554443 67788999999999998775 6789999987774332 11120
Q ss_pred CCCEEEEEEcCCCCEEEEecC-CCeEEEEeCCccceeeeecccCc---CeEEEEECCCCCeEEEEeCCCcEEEEcCCCCc
Q 016187 149 GGGVEWVSWHPRGHIVLAGSE-DSTVWMWNADRAAYLNMFSGHGS---SVTCGDFTPDGKTICTGSDDATLRVWNPKSGE 224 (394)
Q Consensus 149 ~~~v~~~~~~~~~~~l~~~s~-d~~i~iw~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 224 (394)
-+.-..+-|+|++++|+.... +..+..+.+.. +..... .+..+.+-.-|..... -.+.|+|+.+++
T Consensus 100 ~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~------~~~~~~~yp~~~~~~YPk~G~~np~----v~l~v~~~~~~~ 169 (353)
T PF00930_consen 100 FDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPD------YSPPDSQYPEVESIRYPKAGDPNPR----VSLFVVDLASGK 169 (353)
T ss_dssp SSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEE------ESSSTESS-EEEEEE--BTTS---E----EEEEEEESSSTC
T ss_pred cccccceEECCCCCEEEEEEECCcCCceEEeec------cCCccccCCcccccccCCCCCcCCc----eEEEEEECCCCc
Confidence 112245789999998876543 33343332210 001111 2223333212221111 136678887776
Q ss_pred eEEEEcC--CCCcccCeEEEEEcCCCCEEEE--EeCCC---cEEEEECCCCcEEEEec-cCCCCE---EEEEEC-CCC-C
Q 016187 225 NIHVIRG--HPYHTEGLTCLTISADSTLALS--GSKDG---SVHMVNITTGKVVSSLV-SHTDSI---ECIGFS-RSS-P 291 (394)
Q Consensus 225 ~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~--g~~dg---~i~i~d~~~~~~~~~~~-~h~~~i---~~v~~~-~~~-~ 291 (394)
....-.. .......+..+.|.+++..++. ...+. .+.+.|..+++....+. .....| ....+. +++ .
T Consensus 170 ~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~ 249 (353)
T PF00930_consen 170 TTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNE 249 (353)
T ss_dssp CCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSE
T ss_pred EEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCE
Confidence 4321111 0112345788999999883333 23333 46667877664322221 122222 244443 444 4
Q ss_pred eEEEEeCCCcEEE--EeCCCCCcceeccCCCCEEE-EEEeCCCCEEE-EEeCC----CeEEEEECCCCeEEEEeecccCc
Q 016187 292 WAATGSMDQKLII--WDLQHSLPRSTCDHEDGVTC-LMWLGTSKYVV-TGCVD----GKVRVWDSLSGDCVRTFSGHRDA 363 (394)
Q Consensus 292 ~l~s~s~dg~i~i--wd~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~-sg~~d----g~i~iwd~~~~~~~~~~~~h~~~ 363 (394)
++.....+|--.| ++......+......-.|.. +.+.++++.|. +|..+ ..|+.-++..+..++.++...+.
T Consensus 250 ~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~ 329 (353)
T PF00930_consen 250 FLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGD 329 (353)
T ss_dssp EEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSST
T ss_pred EEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCC
Confidence 5555567776444 45555544433333444644 66778766554 55442 24666666634455667654433
Q ss_pred eeEEEEccCCCEEEE
Q 016187 364 IQAISVSAHQDFLVS 378 (394)
Q Consensus 364 v~~l~~~~~~~~l~s 378 (394)
-..+.|+|++++++-
T Consensus 330 ~~~~~~Spdg~y~v~ 344 (353)
T PF00930_consen 330 HYSASFSPDGKYYVD 344 (353)
T ss_dssp TEEEEE-TTSSEEEE
T ss_pred ceEEEECCCCCEEEE
Confidence 358999999998774
No 324
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.54 E-value=4e-05 Score=76.43 Aligned_cols=239 Identities=11% Similarity=0.160 Sum_probs=137.3
Q ss_pred CCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEE
Q 016187 150 GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVI 229 (394)
Q Consensus 150 ~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 229 (394)
+.|.++.|..+...++.+...|.|.+-|..+..... ...-...|.+++|+||++.++..+..+++.+-. .+-..+...
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~f~~i~E~ 146 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMT-KDFEPIAEK 146 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEe-ccccchhcc
Confidence 578899999999999999999999999887664322 222356788999999999999988888775532 221111110
Q ss_pred cC--CCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-cEEEEeccCCCCEEEEEECCCCCeEEEEe----CC-Cc
Q 016187 230 RG--HPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTG-KVVSSLVSHTDSIECIGFSRSSPWAATGS----MD-QK 301 (394)
Q Consensus 230 ~~--~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~-~~~~~~~~h~~~i~~v~~~~~~~~l~s~s----~d-g~ 301 (394)
.. ..........+-|....+.+ -| ..|.....+.... +.+.... -.+.=..|.|-.+|.++|+.. .+ .+
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqf-rg-s~gr~~~~~~~~~ek~~~~~~-~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQF-RG-SEGRQAARQKIEKEKALEQIE-QDDHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred ccccccccccccceecccccceee-ec-chhhhcccccccccccccchh-hccCCceEEEccCCcEEEEEEEeccCCcee
Confidence 00 00000111112222211111 01 1111111111000 0000000 112224578999999998732 23 78
Q ss_pred EEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEe---CCCeEEEEEC---CCCeEEEEeecccCceeEEEEccCCCE
Q 016187 302 LIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGC---VDGKVRVWDS---LSGDCVRTFSGHRDAIQAISVSAHQDF 375 (394)
Q Consensus 302 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~---~dg~i~iwd~---~~~~~~~~~~~h~~~v~~l~~~~~~~~ 375 (394)
+++||-.............--.+++|-|.|..+++-. .|+.|.+|.- +.|...-.+.....+|..++|+.++..
T Consensus 224 irV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdi 303 (1265)
T KOG1920|consen 224 IRVYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDI 303 (1265)
T ss_pred EEEecccchhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCc
Confidence 9999976322111111122235789999999988753 4667989863 223222223333445999999999999
Q ss_pred EEE---EeCCCcEEEEeccCC
Q 016187 376 LVS---VSLDGTARVFEIADF 393 (394)
Q Consensus 376 l~s---~s~dg~i~iw~~~~~ 393 (394)
||. ......|++|-+.++
T Consensus 304 LAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 304 LAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred eeeeecccccceEEEEEecCe
Confidence 887 455556999998775
No 325
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.52 E-value=0.00029 Score=67.53 Aligned_cols=267 Identities=15% Similarity=0.125 Sum_probs=153.6
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceEEEEecCCC------CEE--EEEEcCCCCEEEEecCCCeEEEEeCCccceeeeeccc
Q 016187 119 GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGG------GVE--WVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH 190 (394)
Q Consensus 119 g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~------~v~--~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h 190 (394)
+..++.++.++.|.-.|..+|+.+-.+..... .+. .+... ++..++.++.++.++-+|.++++.+-.+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 44566777789999999999987765543221 000 01111 2257778889999999999998876544332
Q ss_pred CcC--eEEEEECC--CCCeEEEEe---------CCCcEEEEcCCCCceEEEEcCCCCc----------------c-cCe-
Q 016187 191 GSS--VTCGDFTP--DGKTICTGS---------DDATLRVWNPKSGENIHVIRGHPYH----------------T-EGL- 239 (394)
Q Consensus 191 ~~~--v~~~~~~~--~~~~l~s~~---------~dg~i~vwd~~~~~~~~~~~~~~~~----------------~-~~i- 239 (394)
... -..+.-+| .+..++.++ .++.+.-+|..+|+.+-........ . ..+
T Consensus 140 ~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw 219 (488)
T cd00216 140 DQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSW 219 (488)
T ss_pred CCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCcc
Confidence 210 00011112 124455543 3678899999999876655431100 0 000
Q ss_pred EEEEEcCCCCEEEEEeCCC------------------cEEEEECCCCcEEEEecc--CCC----CEEEEEEC----CCC-
Q 016187 240 TCLTISADSTLALSGSKDG------------------SVHMVNITTGKVVSSLVS--HTD----SIECIGFS----RSS- 290 (394)
Q Consensus 240 ~~~~~~~~~~~l~~g~~dg------------------~i~i~d~~~~~~~~~~~~--h~~----~i~~v~~~----~~~- 290 (394)
...++.+.+..++.++.++ .|.-+|+.+|+.+=+++. |.. ......+. -++
T Consensus 220 ~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~ 299 (488)
T cd00216 220 ASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGK 299 (488)
T ss_pred CCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCC
Confidence 1234555567777777665 799999999987755431 210 00000111 122
Q ss_pred --CeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEE------------------eCCCeEEEEECCC
Q 016187 291 --PWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTG------------------CVDGKVRVWDSLS 350 (394)
Q Consensus 291 --~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg------------------~~dg~i~iwd~~~ 350 (394)
..++.++.+|.+...|.++.......... ...++..| ..+..+ ..+|.|...|+.+
T Consensus 300 ~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~--~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~t 375 (488)
T cd00216 300 PVPAIVHAPKNGFFYVLDRTTGKLISARPEV--EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKT 375 (488)
T ss_pred eeEEEEEECCCceEEEEECCCCcEeeEeEee--ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCC
Confidence 25778888999999999887655433211 01122233 233332 2468899999999
Q ss_pred CeEEEEeecc--c------Ccee--EEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 351 GDCVRTFSGH--R------DAIQ--AISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 351 ~~~~~~~~~h--~------~~v~--~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
|+.+-+.... . .+.. .++ ..+.+|+.++.||.++.+|.++
T Consensus 376 G~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ald~~t 425 (488)
T cd00216 376 GKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAFDATT 425 (488)
T ss_pred CcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEEEECCC
Confidence 9987765532 1 1111 122 2457788888999999888654
No 326
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=6.3e-05 Score=72.44 Aligned_cols=195 Identities=17% Similarity=0.183 Sum_probs=125.9
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCC-EEEEEEcCCCCEEEEecCCC-----eEEEEeCCcc------
Q 016187 114 AFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG-VEWVSWHPRGHIVLAGSEDS-----TVWMWNADRA------ 181 (394)
Q Consensus 114 ~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~s~d~-----~i~iw~~~~~------ 181 (394)
+|++.+..++.|+.+|.|.+.+-. -+....++.+... |..+....+..+|++.+.|. .+++|+++..
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 467889999999999998887632 2333445544444 33332222335777776654 4899998643
Q ss_pred cee--eeecc-----cCcCeEEEEECCCCCeEEEEeCCCcEEEEc--CCCCceEEEEcCCCCcccCeEEEEEcCCCCEEE
Q 016187 182 AYL--NMFSG-----HGSSVTCGDFTPDGKTICTGSDDATLRVWN--PKSGENIHVIRGHPYHTEGLTCLTISADSTLAL 252 (394)
Q Consensus 182 ~~~--~~~~~-----h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 252 (394)
.++ ..+.+ ...++.+++.+.+-+.+|.|-.+|.|..+. +...+-.+..-.+ -..++|+.+.+..+++.++
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~-~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSH-RGKEPITGLALRSDGKSVL 187 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeec-cCCCCceeeEEecCCceeE
Confidence 122 11222 345778999999999999999999998884 2111111111111 1356899999998887633
Q ss_pred EEeCCCcEEEEECCCCcE-EEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC
Q 016187 253 SGSKDGSVHMVNITTGKV-VSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSL 311 (394)
Q Consensus 253 ~g~~dg~i~i~d~~~~~~-~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~ 311 (394)
-...-..|.+|.+....+ ...+..|..+++|..+++....+++++ +.-+.+|+.....
T Consensus 188 Fv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRG 246 (933)
T ss_pred EEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcc
Confidence 344456788999874432 444777888999999998776444443 4468899876543
No 327
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=1.8e-05 Score=69.55 Aligned_cols=254 Identities=14% Similarity=0.102 Sum_probs=138.8
Q ss_pred EEEEEcCCCeeeEeecCcccCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCC-CEEEE
Q 016187 89 GFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRG-HIVLA 166 (394)
Q Consensus 89 v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~-~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~ 166 (394)
+++.+..+.+....+.+|...|+.++|||..+ +|..++.+.+|+|.|+.+......+..+ ..+++++|..+. +++.+
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 34444444444556788999999999999887 7889999999999999998887777666 789999998865 57888
Q ss_pred ecCCCeEEEEeCCccce-eeeecc--cCcCeEEEEE------CCCCCeEEEEeCCCcEEEEcCCCCc--eEEEEcCCCCc
Q 016187 167 GSEDSTVWMWNADRAAY-LNMFSG--HGSSVTCGDF------TPDGKTICTGSDDATLRVWNPKSGE--NIHVIRGHPYH 235 (394)
Q Consensus 167 ~s~d~~i~iw~~~~~~~-~~~~~~--h~~~v~~~~~------~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~ 235 (394)
|-..|.|.+||++.... +..+.+ ...+|..++. .+.|.+|+..+. .+..|+..-.. ....++.. .
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele--~ 329 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELE--P 329 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccC--C
Confidence 99999999999875432 222222 1233333332 223344443332 24566643211 11111110 1
Q ss_pred ccCeEEEEEcCCCCEEEEEeCC-C---cEE----EEECCCCcEEEEec-cCCCC-------EEEEEECCCCCe-EEEEeC
Q 016187 236 TEGLTCLTISADSTLALSGSKD-G---SVH----MVNITTGKVVSSLV-SHTDS-------IECIGFSRSSPW-AATGSM 298 (394)
Q Consensus 236 ~~~i~~~~~~~~~~~l~~g~~d-g---~i~----i~d~~~~~~~~~~~-~h~~~-------i~~v~~~~~~~~-l~s~s~ 298 (394)
.+...++...+-.+.++..... . +++ -.|-..|..+-..+ .+.+. -.++.-.++..+ +..+..
T Consensus 330 pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~ 409 (463)
T KOG1645|consen 330 PGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDS 409 (463)
T ss_pred CcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCC
Confidence 2233344444433333332221 0 011 01112222221111 11000 001111233344 445666
Q ss_pred CCcEEEEeCCCCCcceeccCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEEC
Q 016187 299 DQKLIIWDLQHSLPRSTCDHEDGVTCLMWLG--TSKYVVTGCVDGKVRVWDS 348 (394)
Q Consensus 299 dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~sg~~dg~i~iwd~ 348 (394)
.+.+.+||..+...........+|..+.... .+.||++- .|..++||..
T Consensus 410 tn~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~ 460 (463)
T KOG1645|consen 410 TNELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALL-TDDRVHIYKN 460 (463)
T ss_pred cceeEEeccchhheeeecccCcceeecceeecCCcchhhhe-ecceEEEEec
Confidence 7889999998776655555556666555442 23455543 4667777643
No 328
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.43 E-value=0.00063 Score=60.05 Aligned_cols=267 Identities=15% Similarity=0.188 Sum_probs=153.0
Q ss_pred CeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeC----------CCcEEEEeCCCCceEEEEecCCC-C----
Q 016187 87 DKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGL----------DGLVQIWDPSSGNLKCTLEGPGG-G---- 151 (394)
Q Consensus 87 ~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~----------d~~i~vwd~~~~~~~~~~~~~~~-~---- 151 (394)
+++++.|..+++++..+.. +-.-.+..||+|+.+++++. .-.|.+||..+-.....+.-+.. .
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 4789999999998877653 22334678999999887652 34689999998877766554432 1
Q ss_pred --EEEEEEcCCCCEEEEe--cCCCeEEEEeCCccceeeeecccCcCeEEEEECCC-CCeEEEEeCCCcEEEEcCC-CCce
Q 016187 152 --VEWVSWHPRGHIVLAG--SEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPD-GKTICTGSDDATLRVWNPK-SGEN 225 (394)
Q Consensus 152 --v~~~~~~~~~~~l~~~--s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~-~~~~ 225 (394)
....+++.++++++.. +--.+|-+.|+..++.+..+.--. |.-.-|. .+.+.+-|.||++.-..+. .|+.
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~ 170 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKE 170 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEEEEEETTEEEEEETTSCEEEEEETSTSSE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEEEecCCCceEEEecCCceEEEEECCCCCE
Confidence 1235667777766553 334567788888777776654322 2222232 3468888899998888776 4443
Q ss_pred EEEEcCCCCc--ccCeE-EEEEcCCCCEEEEEeCCCcEEEEECCCCcEE--EEeccC----------CCCEEEEEECCCC
Q 016187 226 IHVIRGHPYH--TEGLT-CLTISADSTLALSGSKDGSVHMVNITTGKVV--SSLVSH----------TDSIECIGFSRSS 290 (394)
Q Consensus 226 ~~~~~~~~~~--~~~i~-~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~--~~~~~h----------~~~i~~v~~~~~~ 290 (394)
...... .++ .+++. .-.+...+..++--+..|.|+-.|+...... .....- .+.-.-+++++..
T Consensus 171 ~~~~t~-~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~ 249 (342)
T PF06433_consen 171 AQKSTK-VFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAAS 249 (342)
T ss_dssp EEEEEE-ESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTT
T ss_pred eEeecc-ccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecccc
Confidence 322111 111 11221 1123333444444677888888887665422 222110 0122346677655
Q ss_pred CeEEEE-e--C-----CC--cEEEEeCCCCCcceeccCCCCEEEEEEeCCCC-EEEEEe-CCCeEEEEECCCCeEEEEee
Q 016187 291 PWAATG-S--M-----DQ--KLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSK-YVVTGC-VDGKVRVWDSLSGDCVRTFS 358 (394)
Q Consensus 291 ~~l~s~-s--~-----dg--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~sg~-~dg~i~iwd~~~~~~~~~~~ 358 (394)
..|... . . |+ .|-++|+.+.+......-...+.++..+.+.+ +|++.+ .++.+.+||..+|+.+++++
T Consensus 250 ~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 250 GRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp TEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred CeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 444332 1 1 11 36677887765544444344566888887765 565544 57999999999999999887
Q ss_pred cc
Q 016187 359 GH 360 (394)
Q Consensus 359 ~h 360 (394)
+-
T Consensus 330 ~l 331 (342)
T PF06433_consen 330 QL 331 (342)
T ss_dssp --
T ss_pred cc
Confidence 53
No 329
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.43 E-value=0.001 Score=58.72 Aligned_cols=256 Identities=19% Similarity=0.180 Sum_probs=152.8
Q ss_pred CcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecC----------CCeEEEEeCCccceeeee--cc-cCc---
Q 016187 129 GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE----------DSTVWMWNADRAAYLNMF--SG-HGS--- 192 (394)
Q Consensus 129 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~----------d~~i~iw~~~~~~~~~~~--~~-h~~--- 192 (394)
+.+.|.|..+++.+..+.... .-.+..+|+++.+++++. .-.|.+||..+......+ .. |..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~--~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF--LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES--SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeeccc--CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 478999999999887765432 334677899997776432 336889999886554432 21 111
Q ss_pred -CeEEEEECCCCCeEEEE--eCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CC
Q 016187 193 -SVTCGDFTPDGKTICTG--SDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNIT-TG 268 (394)
Q Consensus 193 -~v~~~~~~~~~~~l~s~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~-~~ 268 (394)
.....+++.++++++.. +-..+|.|-|+..++-+..+.. .++..+--+++ .-+.+-+.||++....+. .|
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-----PGC~~iyP~~~-~~F~~lC~DGsl~~v~Ld~~G 168 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT-----PGCWLIYPSGN-RGFSMLCGDGSLLTVTLDADG 168 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG-----TSEEEEEEEET-TEEEEEETTSCEEEEEETSTS
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC-----CCEEEEEecCC-CceEEEecCCceEEEEECCCC
Confidence 12235788899887654 4456789999988877666542 23333322222 456778889999999887 56
Q ss_pred cEEEEe----ccCCCCE-EEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceec-----c--------CCCCEEEEEEeCC
Q 016187 269 KVVSSL----VSHTDSI-ECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTC-----D--------HEDGVTCLMWLGT 330 (394)
Q Consensus 269 ~~~~~~----~~h~~~i-~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-----~--------~~~~v~~~~~~~~ 330 (394)
+...+. ..-.+++ ..-++...+..++-.+..|.|+-.|+......... . ...+..-+++++.
T Consensus 169 k~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~ 248 (342)
T PF06433_consen 169 KEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAA 248 (342)
T ss_dssp SEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETT
T ss_pred CEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccc
Confidence 554321 1112222 22233444445555778888887777654322110 0 0122334667766
Q ss_pred CCEEEEEe---C-----CC--eEEEEECCCCeEEEEeecccCceeEEEEccCCC-EEEEEe-CCCcEEEEeccCC
Q 016187 331 SKYVVTGC---V-----DG--KVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQD-FLVSVS-LDGTARVFEIADF 393 (394)
Q Consensus 331 ~~~l~sg~---~-----dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s-~dg~i~iw~~~~~ 393 (394)
.+.|..-- . |+ .|=++|+.+++.+.++.. ..++.+|.++.+.+ +|+..+ .++.+.+||..+-
T Consensus 249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG 322 (342)
T ss_dssp TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred cCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence 65555432 1 22 366679999999999885 34688999998754 666554 5799999997753
No 330
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=4.7e-05 Score=72.74 Aligned_cols=178 Identities=16% Similarity=0.213 Sum_probs=118.7
Q ss_pred EEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcC
Q 016187 152 VEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRG 231 (394)
Q Consensus 152 v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 231 (394)
+.+++++ ++.++-|+.+|.+++++..... +....|+.. .-+|++++||+.||+|.|--+-+.+....+.
T Consensus 42 is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d- 110 (846)
T KOG2066|consen 42 ISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD- 110 (846)
T ss_pred HHHHHhh--cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe-
Confidence 3444444 5678899999999999876543 333344433 5579999999999999999888777655443
Q ss_pred CCCcccCeEEEEEcCC-----CCEEEEEeCCCcEEEEECC--CCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEE
Q 016187 232 HPYHTEGLTCLTISAD-----STLALSGSKDGSVHMVNIT--TGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLII 304 (394)
Q Consensus 232 ~~~~~~~i~~~~~~~~-----~~~l~~g~~dg~i~i~d~~--~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~i 304 (394)
...++.+++++|+ .+.+++|+..| +.++.-+ ..+.-..+....++|.++.|. +.++|=++.+| +++
T Consensus 111 ---f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~v 183 (846)
T KOG2066|consen 111 ---FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKV 183 (846)
T ss_pred ---cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEE
Confidence 2346889999998 56889999888 6665422 111111345567899999887 55788777666 899
Q ss_pred EeCCCCCcceecc--C-----CCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 016187 305 WDLQHSLPRSTCD--H-----EDGVTCLMWLGTSKYVVTGCVDGKVRVWDSL 349 (394)
Q Consensus 305 wd~~~~~~~~~~~--~-----~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~ 349 (394)
||+.......... + +.-...+.|.++.+. +.| ...+|+|..++
T Consensus 184 yd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~L-VIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 184 YDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRL-VIG-WGDSVKICSIK 233 (846)
T ss_pred EeccccceeeccCCCCCCCCcccCCCceEecCCCeE-EEe-cCCeEEEEEEe
Confidence 9987653322221 1 112345778776554 443 55678888776
No 331
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.40 E-value=0.00043 Score=65.99 Aligned_cols=219 Identities=11% Similarity=0.031 Sum_probs=129.9
Q ss_pred EcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCC----cEEEEeCCCCceEEEEec
Q 016187 72 CSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDG----LVQIWDPSSGNLKCTLEG 147 (394)
Q Consensus 72 ~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~----~i~vwd~~~~~~~~~~~~ 147 (394)
+.|++..+..+.-..+.+.+.|.++.+...++.--. ....++++|+|+++++.+.+. ++..-+.........+.-
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni 278 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI 278 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence 445433333444455667777888777666554222 335678999999998876432 222222222221111110
Q ss_pred CCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCc-----cceeeeecccCcCeEEEEECCCCCeEEEE-eCCCcEEEEcCC
Q 016187 148 PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR-----AAYLNMFSGHGSSVTCGDFTPDGKTICTG-SDDATLRVWNPK 221 (394)
Q Consensus 148 ~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~ 221 (394)
.. + -++.++|++... .++.|.+.|..+ .+.+..+. -......++++|||++++.+ ..+.+|.|.|+.
T Consensus 279 ~~--i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~ 351 (635)
T PRK02888 279 AR--I--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVR 351 (635)
T ss_pred HH--H--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEECh
Confidence 00 0 123346776555 367899999887 34444433 44556788999999988655 458999999998
Q ss_pred CCceEE--------EEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC----------CcEEEEeccCCCCEEE
Q 016187 222 SGENIH--------VIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT----------GKVVSSLVSHTDSIEC 283 (394)
Q Consensus 222 ~~~~~~--------~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~----------~~~~~~~~~h~~~i~~ 283 (394)
+.+... .+.....-..+.....|.++|..+.+-.-|..|-.||+.+ ..++.++..|-.+-.-
T Consensus 352 k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~ 431 (635)
T PRK02888 352 KLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHN 431 (635)
T ss_pred hhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCcccee
Confidence 755311 1111111123345678899999888888999999999876 3455555554433222
Q ss_pred -----EEECCCCCeEEEEeC
Q 016187 284 -----IGFSRSSPWAATGSM 298 (394)
Q Consensus 284 -----v~~~~~~~~l~s~s~ 298 (394)
-.-.|+++||++...
T Consensus 432 ~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 432 HASMGETKEADGKWLVSLNK 451 (635)
T ss_pred eecCCCcCCCCCCEEEEccc
Confidence 223678899888653
No 332
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.38 E-value=0.0016 Score=58.72 Aligned_cols=272 Identities=17% Similarity=0.171 Sum_probs=128.4
Q ss_pred EEcCCCCEEEEEe-CCC--cEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeeccc
Q 016187 114 AFSMDGQLLASGG-LDG--LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGH 190 (394)
Q Consensus 114 ~~s~~g~~l~t~s-~d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h 190 (394)
+|.+||++|+-++ .|+ .+.+-|+.+++....-.+.........++|+++.++-......++-.|+.+.+....+...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 5788997665444 444 5677788888766443333222223566788887765556678888999888765555555
Q ss_pred CcCeEEEEEC--CCCCeEEEEeC----------------------CCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcC
Q 016187 191 GSSVTCGDFT--PDGKTICTGSD----------------------DATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA 246 (394)
Q Consensus 191 ~~~v~~~~~~--~~~~~l~s~~~----------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~ 246 (394)
...+-...|. .++..++-.-. ...|.--|+.+|+....+. ....+..+.++|
T Consensus 122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~----~~~wlgH~~fsP 197 (386)
T PF14583_consen 122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE----DTDWLGHVQFSP 197 (386)
T ss_dssp TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE----ESS-EEEEEEET
T ss_pred cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe----cCccccCcccCC
Confidence 5555444553 35555433211 1234444566665433333 123466788888
Q ss_pred CCC-EEEEEeC------CCcEEEEECCCCcEEEEeccCC--CCEEEEEECCCCCeEEEEe--C---CCcEEEEeCCCCCc
Q 016187 247 DST-LALSGSK------DGSVHMVNITTGKVVSSLVSHT--DSIECIGFSRSSPWAATGS--M---DQKLIIWDLQHSLP 312 (394)
Q Consensus 247 ~~~-~l~~g~~------dg~i~i~d~~~~~~~~~~~~h~--~~i~~v~~~~~~~~l~s~s--~---dg~i~iwd~~~~~~ 312 (394)
... +++-|.+ |..|.+.+.. +.....+..+. ..+.---|.|+|..+.--+ . +..|.-+|+.+...
T Consensus 198 ~dp~li~fCHEGpw~~Vd~RiW~i~~d-g~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~ 276 (386)
T PF14583_consen 198 TDPTLIMFCHEGPWDLVDQRIWTINTD-GSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER 276 (386)
T ss_dssp TEEEEEEEEE-S-TTTSS-SEEEEETT-S---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E
T ss_pred CCCCEEEEeccCCcceeceEEEEEEcC-CCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc
Confidence 654 4444432 2344444533 33334443332 2344456888888654422 1 22455566665433
Q ss_pred ceeccCCCCEEEEEEeCCCCEEEEEeCCC----------------eEEEEECCCCeEEE--E-------eecccCc-eeE
Q 016187 313 RSTCDHEDGVTCLMWLGTSKYVVTGCVDG----------------KVRVWDSLSGDCVR--T-------FSGHRDA-IQA 366 (394)
Q Consensus 313 ~~~~~~~~~v~~~~~~~~~~~l~sg~~dg----------------~i~iwd~~~~~~~~--~-------~~~h~~~-v~~ 366 (394)
+.. ...........++++++++-=+.|. -|+++++..++... . +.++... =-.
T Consensus 277 ~~~-~~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPh 355 (386)
T PF14583_consen 277 RRL-MEMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPH 355 (386)
T ss_dssp EEE-EEE-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT---
T ss_pred eEE-EeCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCC
Confidence 322 2222344566678888776433332 56778887766432 1 1222221 246
Q ss_pred EEEccCCCEEEEEe-CCCcEEEEecc
Q 016187 367 ISVSAHQDFLVSVS-LDGTARVFEIA 391 (394)
Q Consensus 367 l~~~~~~~~l~s~s-~dg~i~iw~~~ 391 (394)
..|+||+++|+-.| ..|...||-++
T Consensus 356 p~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 356 PSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp -EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred CccCCCCCEEEEECCCCCCccEEEEe
Confidence 88999999877544 57888877543
No 333
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=0.0024 Score=59.19 Aligned_cols=257 Identities=15% Similarity=0.147 Sum_probs=161.1
Q ss_pred EEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEec-CCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeE-EE
Q 016187 131 VQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS-EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTI-CT 208 (394)
Q Consensus 131 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s 208 (394)
+.+++..+.+....+.... ....+...+++..+.... ....+...+............-......+++++.++.+ +.
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~ 91 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVT 91 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEe
Confidence 5555555544443333222 344567777775433322 22244444444222111111111334567888888754 45
Q ss_pred EeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeC---CCcEEEEECCCCcEEEEeccCCCCEEEEE
Q 016187 209 GSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK---DGSVHMVNITTGKVVSSLVSHTDSIECIG 285 (394)
Q Consensus 209 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~---dg~i~i~d~~~~~~~~~~~~h~~~i~~v~ 285 (394)
...+..|.+.|..+.+........ .....++++|+++.+.++.. ++++.+.|..+++.+.+...-..+ ..++
T Consensus 92 ~~~~~~v~vid~~~~~~~~~~~vG----~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a 166 (381)
T COG3391 92 TGDSNTVSVIDTATNTVLGSIPVG----LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVA 166 (381)
T ss_pred cCCCCeEEEEcCcccceeeEeeec----cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEE
Confidence 555689999998777766554421 14557899999977766654 789999999999988875544445 8899
Q ss_pred ECCCCCeEEEE-eCCCcEEEEeCCCCCcce-----eccCCCCEEEEEEeCCCCEEEEEeCC---CeEEEEECCCCeEEEE
Q 016187 286 FSRSSPWAATG-SMDQKLIIWDLQHSLPRS-----TCDHEDGVTCLMWLGTSKYVVTGCVD---GKVRVWDSLSGDCVRT 356 (394)
Q Consensus 286 ~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~sg~~d---g~i~iwd~~~~~~~~~ 356 (394)
++|++..+... ..+++|.+.|........ ...-......+.+.+++.++...... +.+...|..++.....
T Consensus 167 ~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 167 VDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT 246 (381)
T ss_pred ECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence 99999966555 478899999976543331 12223334567889999877665443 5899999988877665
Q ss_pred -eecccCceeEEEEccCCCEEEEEe-CCCcEEEEeccCC
Q 016187 357 -FSGHRDAIQAISVSAHQDFLVSVS-LDGTARVFEIADF 393 (394)
Q Consensus 357 -~~~h~~~v~~l~~~~~~~~l~s~s-~dg~i~iw~~~~~ 393 (394)
+..-...-..+.++|++.++...- ..+.+.+-+...+
T Consensus 247 ~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 247 DLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred ccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 222221345788999999887773 4477777765543
No 334
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.33 E-value=0.00036 Score=65.17 Aligned_cols=218 Identities=13% Similarity=0.165 Sum_probs=112.1
Q ss_pred CCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEE
Q 016187 150 GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVI 229 (394)
Q Consensus 150 ~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 229 (394)
-....++++|+++.++. ..+|...++......... .+......|.+.+ .+|+-...++|+++.--+......+
T Consensus 33 ~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~i 105 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKSI 105 (443)
T ss_dssp S--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT---
T ss_pred cCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc-----cCceeEEEEecCc-cEEEEECCCeEEEEEcCccccceEE
Confidence 34667999999998887 567888888744333222 1223456788854 4666666888999632222222222
Q ss_pred cCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCC
Q 016187 230 RGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQH 309 (394)
Q Consensus 230 ~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~ 309 (394)
.. ...+..+- + |.+|...+.+ .|.+||..+++.+.++... +|..|.|++++.++|-.+.+ .+.|++...
T Consensus 106 ~~----~~~~~~If--~-G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 106 KL----PFSVEKIF--G-GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNL 174 (443)
T ss_dssp ------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-H
T ss_pred cC----CcccceEE--c-CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecc
Confidence 21 11122222 2 7777776554 8999999999999998643 48999999999999988755 566665432
Q ss_pred C---------Cc-ceeccC--CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEE
Q 016187 310 S---------LP-RSTCDH--EDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLV 377 (394)
Q Consensus 310 ~---------~~-~~~~~~--~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~ 377 (394)
. .. .....| ...|.+.+|..+ -++.|-. ..|+.+ ..|+. ..+..-..++.=+.+.+..+.+.
T Consensus 175 ~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~--~~lkYl--~~Ge~-~~i~~ld~~~yllgy~~~~~~ly 248 (443)
T PF04053_consen 175 EAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTS--NHLKYL--VNGET-GIIAHLDKPLYLLGYLPKENRLY 248 (443)
T ss_dssp HHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-T--TEEEEE--ETTEE-EEEEE-SS--EEEEEETTTTEEE
T ss_pred hhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcC--CeEEEE--EcCCc-ceEEEcCCceEEEEEEccCCEEE
Confidence 2 00 111112 345667777665 3333322 266653 22322 12222234566667777778888
Q ss_pred EEeCCCcEEEEecc
Q 016187 378 SVSLDGTARVFEIA 391 (394)
Q Consensus 378 s~s~dg~i~iw~~~ 391 (394)
....|+.|..+.+.
T Consensus 249 ~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 249 LIDRDGNVISYELD 262 (443)
T ss_dssp EE-TT--EEEEE--
T ss_pred EEECCCCEEEEEEC
Confidence 88888888887654
No 335
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.31 E-value=3.2e-05 Score=71.74 Aligned_cols=74 Identities=20% Similarity=0.308 Sum_probs=63.0
Q ss_pred ccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 316 CDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 316 ~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
......+.|++++|+...|+.|+.||+|.+||..++... +....-..+.++|+|+|.+++.|+..|.+.+||++
T Consensus 256 ipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 256 IPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred EecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 356778999999999999999999999999998766433 33334456889999999999999999999999976
No 336
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.31 E-value=0.004 Score=60.10 Aligned_cols=278 Identities=16% Similarity=0.212 Sum_probs=150.7
Q ss_pred EEEecCCCeEEEEEcCCCeeeEeecCcc-cCEE----------EEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecC
Q 016187 80 VATGGGDDKGFFWRINQGDWASEIQGHK-DSVS----------SLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGP 148 (394)
Q Consensus 80 lasg~~d~~v~~w~~~~~~~~~~~~~h~-~~V~----------~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~ 148 (394)
+..++.++.++-.|..+++.+-.+.-.. ..+. .+++ .+..++.++.|+.|.-.|..+|+.+-.....
T Consensus 72 vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~ 149 (527)
T TIGR03075 72 MYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSKKNG 149 (527)
T ss_pred EEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeecccc
Confidence 3345566777778888887665443111 1111 1222 2346777888999999999999987654321
Q ss_pred CCC-EEEEEEcC---CCCEEEEec------CCCeEEEEeCCccceeeeeccc----------------------------
Q 016187 149 GGG-VEWVSWHP---RGHIVLAGS------EDSTVWMWNADRAAYLNMFSGH---------------------------- 190 (394)
Q Consensus 149 ~~~-v~~~~~~~---~~~~l~~~s------~d~~i~iw~~~~~~~~~~~~~h---------------------------- 190 (394)
... -..+.-.| ++ .++.++ .++.|..+|.++++.+-.+..-
T Consensus 150 ~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~ 228 (527)
T TIGR03075 150 DYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAW 228 (527)
T ss_pred cccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCcc
Confidence 100 00011112 33 344443 2678888888877654322110
Q ss_pred ---CcCe-EEEEECCCCCeEEEEeCC-----C-----------cEEEEcCCCCceEEEEcCCC--Ccc----cCeEEEEE
Q 016187 191 ---GSSV-TCGDFTPDGKTICTGSDD-----A-----------TLRVWNPKSGENIHVIRGHP--YHT----EGLTCLTI 244 (394)
Q Consensus 191 ---~~~v-~~~~~~~~~~~l~s~~~d-----g-----------~i~vwd~~~~~~~~~~~~~~--~~~----~~i~~~~~ 244 (394)
...+ ...++.|...++..+... + +|.--|+++|+..-.++..+ ... ....-+.+
T Consensus 229 ~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~ 308 (527)
T TIGR03075 229 KTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDL 308 (527)
T ss_pred ccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEe
Confidence 0111 123566655666555422 2 56667788887654443211 110 12233344
Q ss_pred cCCCC---EEEEEeCCCcEEEEECCCCcEEEEe--cc----------CC-CCE---------------------------
Q 016187 245 SADST---LALSGSKDGSVHMVNITTGKVVSSL--VS----------HT-DSI--------------------------- 281 (394)
Q Consensus 245 ~~~~~---~l~~g~~dg~i~i~d~~~~~~~~~~--~~----------h~-~~i--------------------------- 281 (394)
..+|+ .++.+..+|.+.++|..+|+.+... .. .. .++
T Consensus 309 ~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~ 388 (527)
T TIGR03075 309 KKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKN 388 (527)
T ss_pred ccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCC
Confidence 45665 7889999999999999999876221 00 00 000
Q ss_pred -EEEEECCCCCeEEEEeCC---------------------------------CcEEEEeCCCCCcceeccCCCCEEEEEE
Q 016187 282 -ECIGFSRSSPWAATGSMD---------------------------------QKLIIWDLQHSLPRSTCDHEDGVTCLMW 327 (394)
Q Consensus 282 -~~v~~~~~~~~l~s~s~d---------------------------------g~i~iwd~~~~~~~~~~~~~~~v~~~~~ 327 (394)
..++++|...++.....+ |.|.-+|+.+...........+...-..
T Consensus 389 W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~l 468 (527)
T TIGR03075 389 WQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDFPLWGGVL 468 (527)
T ss_pred CCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCCCCCCCcce
Confidence 014566655554433322 3455566655544433222211111111
Q ss_pred eCCCCEEEEEeCCCeEEEEECCCCeEEEEeecc
Q 016187 328 LGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGH 360 (394)
Q Consensus 328 ~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h 360 (394)
.-.+..++.++.+|.++.+|.+||+.+-++.-.
T Consensus 469 ~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 469 ATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred EECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 124457778888999999999999999887643
No 337
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.29 E-value=2.4e-05 Score=75.03 Aligned_cols=70 Identities=20% Similarity=0.289 Sum_probs=62.2
Q ss_pred EEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 016187 67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPS 137 (394)
Q Consensus 67 v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~ 137 (394)
+.+++|||. ..+||.|=.-+.+-+|..++.+.-.....|+.+|..+.|||+|..|+|+..-|.|.+|...
T Consensus 62 atSLCWHpe-~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPE-EFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChH-HHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 467999994 6788999889999999998888777777899999999999999999999999999999764
No 338
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.29 E-value=0.0022 Score=56.58 Aligned_cols=228 Identities=14% Similarity=0.155 Sum_probs=128.7
Q ss_pred CCCCEEEEEeCCCcEEEEeCCC-CceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeee---------
Q 016187 117 MDGQLLASGGLDGLVQIWDPSS-GNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM--------- 186 (394)
Q Consensus 117 ~~g~~l~t~s~d~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~--------- 186 (394)
..++.|+.|..+| |.+++... .+...... ..+|..+...|+-+.+++-+ |+.++++++........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 4578899999888 89998832 33332222 22399999988877666654 49999999865332221
Q ss_pred -----ecccCcCeEEEE--ECCCCCeEEEEeCCCcEEEEcCCCC-----ceEEEEcCCCCcccCeEEEEEcCCCCEEEEE
Q 016187 187 -----FSGHGSSVTCGD--FTPDGKTICTGSDDATLRVWNPKSG-----ENIHVIRGHPYHTEGLTCLTISADSTLALSG 254 (394)
Q Consensus 187 -----~~~h~~~v~~~~--~~~~~~~l~s~~~dg~i~vwd~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g 254 (394)
.......+...+ -.+.+...+.....++|.+|..... +..+.+. ....+..+.|. +..++.|
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~----lp~~~~~i~~~--~~~i~v~ 154 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS----LPDPPSSIAFL--GNKICVG 154 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE----cCCCcEEEEEe--CCEEEEE
Confidence 001122233323 1123444444455568888877553 2233332 23557778877 5566666
Q ss_pred eCCCcEEEEECCCCcEEEEecc------------CCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcc-eeccCCCC
Q 016187 255 SKDGSVHMVNITTGKVVSSLVS------------HTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPR-STCDHEDG 321 (394)
Q Consensus 255 ~~dg~i~i~d~~~~~~~~~~~~------------h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~ 321 (394)
..+ ...+.|+.++....-+.. ...++..+... ++.+|++- +..-.+.|......+ ....-...
T Consensus 155 ~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~~G~~~r~~~i~W~~~ 230 (275)
T PF00780_consen 155 TSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNKNGEPSRKSTIQWSSA 230 (275)
T ss_pred eCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcCCCCcCcccEEEcCCc
Confidence 644 478889887654322211 11234444444 34555542 333344454433222 22222334
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeeccc
Q 016187 322 VTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHR 361 (394)
Q Consensus 322 v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~ 361 (394)
+..+++. ..||++.+. +.|.||++.++++++.+...+
T Consensus 231 p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 231 PQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLPN 267 (275)
T ss_pred hhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEECCC
Confidence 4555553 358887666 459999999999999888543
No 339
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.28 E-value=0.002 Score=55.29 Aligned_cols=200 Identities=17% Similarity=0.232 Sum_probs=115.0
Q ss_pred eecCcccCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceEEEEecC-CCCEEEEEEcCCCCEEEEecCCCeEEEEeCC
Q 016187 102 EIQGHKDSVSSLAFSMDGQ-LLASGGLDGLVQIWDPSSGNLKCTLEGP-GGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179 (394)
Q Consensus 102 ~~~~h~~~V~~v~~s~~g~-~l~t~s~d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~ 179 (394)
.+.+-.+.+..++|.|+.. ++++....+.|...+. +|+.+..+... .+....+++..++.++++--.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 5666667799999999866 5556666777877886 57877766543 3678889998888777776678999988873
Q ss_pred ccc------eeeeec-----ccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCC---CceEEEEc-----CCCCcccCeE
Q 016187 180 RAA------YLNMFS-----GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS---GENIHVIR-----GHPYHTEGLT 240 (394)
Q Consensus 180 ~~~------~~~~~~-----~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~---~~~~~~~~-----~~~~~~~~i~ 240 (394)
... ....+. .+...+-.++|.|.++.|+.+-...-.+++.+.. ...+.... ........+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 211 111111 2344578899999888888777776677776543 22222111 0112234577
Q ss_pred EEEEcCC-CCEEEEEeCCCcEEEEECCCCcEEEEeccCC---------CCEEEEEECCCCCeEEEEeCCCcEEE
Q 016187 241 CLTISAD-STLALSGSKDGSVHMVNITTGKVVSSLVSHT---------DSIECIGFSRSSPWAATGSMDQKLII 304 (394)
Q Consensus 241 ~~~~~~~-~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~---------~~i~~v~~~~~~~~l~s~s~dg~i~i 304 (394)
.+.++|. +.+++.+..+..|..+| .+|+++..+.-.. .....|+|.++|.+.++ +.-+....
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~ 246 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYR 246 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEE
Confidence 8888885 56777788889999999 6777766543222 35789999999865544 44544443
No 340
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.28 E-value=0.0037 Score=58.37 Aligned_cols=244 Identities=14% Similarity=0.173 Sum_probs=127.6
Q ss_pred eEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEe-------cCCCCEEEEEEcCC
Q 016187 88 KGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLE-------GPGGGVEWVSWHPR 160 (394)
Q Consensus 88 ~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~-------~~~~~v~~~~~~~~ 160 (394)
.|++|+. .|+.+..+.--.+.|.++.|+.+ ..|+....||.++++|+. |+....+. -....+....+..+
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCC
Confidence 5888986 45556655444488999999985 455567789999999986 33311111 01111222233335
Q ss_pred CCEEEEecCCCeEEEEeCCccc-eeeee---cccCc------CeEE-EEECCCCCeEEEEeCCCcEEEEcCCCCceEEEE
Q 016187 161 GHIVLAGSEDSTVWMWNADRAA-YLNMF---SGHGS------SVTC-GDFTPDGKTICTGSDDATLRVWNPKSGENIHVI 229 (394)
Q Consensus 161 ~~~l~~~s~d~~i~iw~~~~~~-~~~~~---~~h~~------~v~~-~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 229 (394)
|-.+++ .++.+++.+--... ..+.+ .+... .... ..++.+....+....++.+.+-+-...+. +
T Consensus 139 GivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i 213 (410)
T PF04841_consen 139 GIVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I 213 (410)
T ss_pred CEEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c
Confidence 544443 34445544322211 11111 11000 0000 12333333444444444444333211111 1
Q ss_pred cCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccC-CCCEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 016187 230 RGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSH-TDSIECIGFSRSSPWAATGSMDQKLIIWDLQ 308 (394)
Q Consensus 230 ~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h-~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~ 308 (394)
. ...++..+++||++++++.-..+|.+.+.+..-.+.+..+.-. ......+.|..+...++.- ...+.+....
T Consensus 214 ~----~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg~~ 287 (410)
T PF04841_consen 214 D----SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVGPD 287 (410)
T ss_pred c----CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEECCC
Confidence 1 1246899999999999999999999999887666665555433 3455677777654333322 3344444322
Q ss_pred CCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeec
Q 016187 309 HSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSG 359 (394)
Q Consensus 309 ~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 359 (394)
.. .+.|.-++..++..-.|| |||......+.+++...
T Consensus 288 ~~-------------~~~~~~~~~~~l~~E~DG-~riit~~~~~~l~~Vp~ 324 (410)
T PF04841_consen 288 GD-------------SISFWYDGPVILVSEIDG-VRIITSTSHEFLQRVPD 324 (410)
T ss_pred CC-------------ceEEeccCceEEeccCCc-eEEEeCCceEEEEECCH
Confidence 11 123333344445555566 88887666666666543
No 341
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.27 E-value=0.0017 Score=54.40 Aligned_cols=101 Identities=17% Similarity=0.142 Sum_probs=66.2
Q ss_pred EEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEc
Q 016187 79 LVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWH 158 (394)
Q Consensus 79 ~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 158 (394)
+++-|...+.+++-+.++|+....+..-..-=......+++..+..|+.|++....|..+...+.+.+...+-..+-+..
T Consensus 65 fVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~ 144 (354)
T KOG4649|consen 65 FVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIA 144 (354)
T ss_pred EEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceec
Confidence 45667778888888888887665544321111123457889999999999999999999888777766555444444556
Q ss_pred CCCCEEEEecCCCeEEEEeCC
Q 016187 159 PRGHIVLAGSEDSTVWMWNAD 179 (394)
Q Consensus 159 ~~~~~l~~~s~d~~i~iw~~~ 179 (394)
|-...|..+...|.+.--+.+
T Consensus 145 ~g~~sly~a~t~G~vlavt~~ 165 (354)
T KOG4649|consen 145 PGDGSLYAAITAGAVLAVTKN 165 (354)
T ss_pred CCCceEEEEeccceEEEEccC
Confidence 633445555555555444433
No 342
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.27 E-value=0.00078 Score=57.75 Aligned_cols=194 Identities=13% Similarity=0.177 Sum_probs=111.2
Q ss_pred eeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCc-ccCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 016187 59 IFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGH-KDSVSSLAFSMDGQLLASGGLDGLVQIWDPS 137 (394)
Q Consensus 59 ~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h-~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~ 137 (394)
.+.+-.+++..|+|.|+.+.++|.....+.+.-.+. .|+.++.+.-. .+-.-.|++..++.++++.-.++.+.+.++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 445666789999999988889999999999888886 47777665322 2457788888888777766668899888873
Q ss_pred CC--ce----EEEEe-----cCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCc---ccee--ee------ecccCcCeE
Q 016187 138 SG--NL----KCTLE-----GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR---AAYL--NM------FSGHGSSVT 195 (394)
Q Consensus 138 ~~--~~----~~~~~-----~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~---~~~~--~~------~~~h~~~v~ 195 (394)
.. .. ...+. .....+..++|.|.++.|+.+-...-..+|.+.. ...+ .. .......+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 22 11 11121 2345689999999988777776666556665542 1111 11 112334578
Q ss_pred EEEECCC-CCeEEEEeCCCcEEEEcCCCCceEEEEcCCCC------cccCeEEEEEcCCCCEEEEE
Q 016187 196 CGDFTPD-GKTICTGSDDATLRVWNPKSGENIHVIRGHPY------HTEGLTCLTISADSTLALSG 254 (394)
Q Consensus 196 ~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~g 254 (394)
+++++|. +++++....+..|..+| .+|+.+..+..... .....-.+++.++|++++++
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 8899985 56777778888899999 56765554432211 11235567888988776665
No 343
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=0.0051 Score=57.03 Aligned_cols=201 Identities=14% Similarity=0.160 Sum_probs=136.3
Q ss_pred EEEEEEcCCCCE-EEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecC---CCeEEEEeCCccceee
Q 016187 110 VSSLAFSMDGQL-LASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSE---DSTVWMWNADRAAYLN 185 (394)
Q Consensus 110 V~~v~~s~~g~~-l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~---d~~i~iw~~~~~~~~~ 185 (394)
-..+++++.+.. +++...+..|.+.|..+.+......-.. ....+++.|+++.+..+.. ++++.+.|..+.+.+.
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 356788888874 4555556899999987777666554322 4567899999976655544 6889999988887777
Q ss_pred eecccCcCeEEEEECCCCCeEEEEe-CCCcEEEEcCCCCceEE-EEcCCCCcccCeEEEEEcCCCCEEEEEeCC---CcE
Q 016187 186 MFSGHGSSVTCGDFTPDGKTICTGS-DDATLRVWNPKSGENIH-VIRGHPYHTEGLTCLTISADSTLALSGSKD---GSV 260 (394)
Q Consensus 186 ~~~~h~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~g~~d---g~i 260 (394)
....-..+ ..+++.|+|+.++.+. .++.|.+.|........ ..............+.++|++.++.+.... +.+
T Consensus 155 ~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v 233 (381)
T COG3391 155 TIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNV 233 (381)
T ss_pred EEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceE
Confidence 64433334 7889999999766554 78899999976654432 100000112234567899999966655433 599
Q ss_pred EEEECCCCcEEEEeccCCC-CEEEEEECCCCCeEEEEeC-CCcEEEEeCCCCCc
Q 016187 261 HMVNITTGKVVSSLVSHTD-SIECIGFSRSSPWAATGSM-DQKLIIWDLQHSLP 312 (394)
Q Consensus 261 ~i~d~~~~~~~~~~~~h~~-~i~~v~~~~~~~~l~s~s~-dg~i~iwd~~~~~~ 312 (394)
...|..++........-.. ....+.++|++.++.+... .+.+.+-|......
T Consensus 234 ~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v 287 (381)
T COG3391 234 LKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRV 287 (381)
T ss_pred EEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCce
Confidence 9999998877665221112 4566889999998877744 47888888766443
No 344
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.15 E-value=1.1e-06 Score=81.57 Aligned_cols=195 Identities=17% Similarity=0.248 Sum_probs=125.9
Q ss_pred CEEEEEEcCCC--CEEEEecCCCeEEEEeCCccce--eeeecccCcCeEEEEECC-CCCeEEEEe----CCCcEEEEcCC
Q 016187 151 GVEWVSWHPRG--HIVLAGSEDSTVWMWNADRAAY--LNMFSGHGSSVTCGDFTP-DGKTICTGS----DDATLRVWNPK 221 (394)
Q Consensus 151 ~v~~~~~~~~~--~~l~~~s~d~~i~iw~~~~~~~--~~~~~~h~~~v~~~~~~~-~~~~l~s~~----~dg~i~vwd~~ 221 (394)
.+.++++.-+. .+++.|..+|.|-+-.++...- -....+|..++++++|++ |.+.||.|- .|..+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 34555554433 4778899999999988764321 234567888999999998 566777764 36789999987
Q ss_pred CCce--EE--EEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECC-CCCeEEEE
Q 016187 222 SGEN--IH--VIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSR-SSPWAATG 296 (394)
Q Consensus 222 ~~~~--~~--~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~-~~~~l~s~ 296 (394)
++-. .. .+.. ....+..++++-.+.+++++|.....++++|++..... .....+..+..+.++| .+.|+++-
T Consensus 138 s~ltvPke~~~fs~--~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~-~~svnTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 138 SLLTVPKESPLFSS--STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDS-VSSVNTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred cccCCCcccccccc--ccccCccccccccCcchhhcccccchhhhhhhhhhhhh-hhhhhhhhcccceecCCCCCceecc
Confidence 7621 11 1111 12345667888888999999999999999999843211 1111334555677788 66677766
Q ss_pred eCCCcEEEEeC-CCC-CcceeccC-----CCCEEEEEEeCCCC-EEEEEeC-CCeEEEEECC
Q 016187 297 SMDQKLIIWDL-QHS-LPRSTCDH-----EDGVTCLMWLGTSK-YVVTGCV-DGKVRVWDSL 349 (394)
Q Consensus 297 s~dg~i~iwd~-~~~-~~~~~~~~-----~~~v~~~~~~~~~~-~l~sg~~-dg~i~iwd~~ 349 (394)
. ||.|.+||. ++. .+.....| ...+..++|.|... .+++.+. .++|+++++.
T Consensus 215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 5 999999994 221 11111122 23488999998653 3444443 4678999864
No 345
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.15 E-value=0.0018 Score=59.79 Aligned_cols=227 Identities=14% Similarity=0.182 Sum_probs=124.3
Q ss_pred cEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCe-------------------------------------------eeEe
Q 016187 66 EVYSVACSPTDATLVATGGGDDKGFFWRINQGD-------------------------------------------WASE 102 (394)
Q Consensus 66 ~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~-------------------------------------------~~~~ 102 (394)
.|..+.|++. ..-||.|-..|.|.||.....+ ....
T Consensus 3 ~v~~vs~a~~-t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPE-TLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETT-TTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCC-CceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 5788899885 4456677788888887642110 0011
Q ss_pred ecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEE--ec------CCCCEEEEEEcC-----CC---CEEEE
Q 016187 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTL--EG------PGGGVEWVSWHP-----RG---HIVLA 166 (394)
Q Consensus 103 ~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~--~~------~~~~v~~~~~~~-----~~---~~l~~ 166 (394)
++...++|++++.|.= .++|.|..+|.+.|.|++....+..- .. ....++++.|.. ++ -.+++
T Consensus 82 ~~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp E---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eeccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 2334689999999854 48999999999999999877766542 12 234577777763 22 37889
Q ss_pred ecCCCeEEEEeCC--c-ccee----eeecccCcCeEEEE-ECCC-C-------------------CeEEEEeCCCcEEEE
Q 016187 167 GSEDSTVWMWNAD--R-AAYL----NMFSGHGSSVTCGD-FTPD-G-------------------KTICTGSDDATLRVW 218 (394)
Q Consensus 167 ~s~d~~i~iw~~~--~-~~~~----~~~~~h~~~v~~~~-~~~~-~-------------------~~l~s~~~dg~i~vw 218 (394)
|...|.+.+|.+. . +... .....+.+++..+. |+.+ | +-++....+..+|++
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~ 240 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF 240 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence 9999999999763 1 2221 11123445554443 3221 1 124444557889999
Q ss_pred cCCCCceEEEEcCCCCcccCeEEEEE-----cCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCC----CCEEEEEECCC
Q 016187 219 NPKSGENIHVIRGHPYHTEGLTCLTI-----SADSTLALSGSKDGSVHMVNITTGKVVSSLVSHT----DSIECIGFSRS 289 (394)
Q Consensus 219 d~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~----~~i~~v~~~~~ 289 (394)
.+.+.+..++....+.. ...+.+ ...+..|++-..+|.++++.+..-+.+..+.... ..+....++++
T Consensus 241 ~~~~~k~~~K~~~~~~~---~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~ 317 (395)
T PF08596_consen 241 KPPKSKGAHKSFDDPFL---CSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRN 317 (395)
T ss_dssp -TT---EEEEE-SS-EE---EEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TT
T ss_pred eCCCCcccceeeccccc---cceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCC
Confidence 98887766554422111 122222 2356677888899999999999988887765432 12334556777
Q ss_pred CCeEEEEe
Q 016187 290 SPWAATGS 297 (394)
Q Consensus 290 ~~~l~s~s 297 (394)
|..++-.+
T Consensus 318 Gdi~~~~g 325 (395)
T PF08596_consen 318 GDIFYWTG 325 (395)
T ss_dssp S-EEEE-S
T ss_pred CCEEEEeC
Confidence 77665544
No 346
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.13 E-value=0.00086 Score=62.71 Aligned_cols=220 Identities=16% Similarity=0.135 Sum_probs=106.0
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceee
Q 016187 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN 185 (394)
Q Consensus 106 h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~ 185 (394)
..-....+.++|+|++++.+ .||.-.|+.....+.... +.-....|.+.+. +++-...++|.++.--+....+
T Consensus 31 ~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k 103 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVK 103 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT-
T ss_pred CCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc-----CceeEEEEecCcc-EEEEECCCeEEEEEcCccccce
Confidence 34457899999999999884 577888887544443322 2233478888555 5665668889996332222212
Q ss_pred eecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 016187 186 MFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI 265 (394)
Q Consensus 186 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~ 265 (394)
.+... ..+..+ |. |..|+..+.+ .|.+||..+++.+..+.. .+|..+.|++++.+++..+.+ .+.+++.
T Consensus 104 ~i~~~-~~~~~I-f~--G~LL~~~~~~-~i~~yDw~~~~~i~~i~v-----~~vk~V~Ws~~g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 104 SIKLP-FSVEKI-FG--GNLLGVKSSD-FICFYDWETGKLIRRIDV-----SAVKYVIWSDDGELVALVTKD-SIYILKY 172 (443)
T ss_dssp ----S-S-EEEE-E---SSSEEEEETT-EEEEE-TTT--EEEEESS------E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred EEcCC-cccceE-Ec--CcEEEEECCC-CEEEEEhhHcceeeEEec-----CCCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence 22211 122222 22 7777776654 899999999988887753 247899999999999888755 6777664
Q ss_pred CCC-----------cEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEE
Q 016187 266 TTG-----------KVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYV 334 (394)
Q Consensus 266 ~~~-----------~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l 334 (394)
... ..+..+..-...|.+..|..+ -++.|. .. +++.+ -.+.......-..++.-+.+.+..+.+
T Consensus 173 ~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT-~~-~lkYl--~~Ge~~~i~~ld~~~yllgy~~~~~~l 247 (443)
T PF04053_consen 173 NLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTT-SN-HLKYL--VNGETGIIAHLDKPLYLLGYLPKENRL 247 (443)
T ss_dssp -HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE--TT-EEEEE--ETTEEEEEEE-SS--EEEEEETTTTEE
T ss_pred cchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEc-CC-eEEEE--EcCCcceEEEcCCceEEEEEEccCCEE
Confidence 332 022222222456777777655 233332 22 44432 111111111112334444455555555
Q ss_pred EEEeCCCeEEEEEC
Q 016187 335 VTGCVDGKVRVWDS 348 (394)
Q Consensus 335 ~sg~~dg~i~iwd~ 348 (394)
.....++.|..+.+
T Consensus 248 y~~Dr~~~v~~~~l 261 (443)
T PF04053_consen 248 YLIDRDGNVISYEL 261 (443)
T ss_dssp EEE-TT--EEEEE-
T ss_pred EEEECCCCEEEEEE
Confidence 55555555555543
No 347
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.12 E-value=2.2e-06 Score=79.52 Aligned_cols=256 Identities=12% Similarity=0.199 Sum_probs=151.1
Q ss_pred ccCEEEEEEcCCC--CEEEEEeCCCcEEEEeCCCCce--EEEEecCCCCEEEEEEcCCC-CEEEEec----CCCeEEEEe
Q 016187 107 KDSVSSLAFSMDG--QLLASGGLDGLVQIWDPSSGNL--KCTLEGPGGGVEWVSWHPRG-HIVLAGS----EDSTVWMWN 177 (394)
Q Consensus 107 ~~~V~~v~~s~~g--~~l~t~s~d~~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~-~~l~~~s----~d~~i~iw~ 177 (394)
...+.|++++.+. ..++.|..+|.|-+-.+....- .....++..++++++|++-. +.|++|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 4457777776544 4788999999999887654321 22345677889999999854 4555553 356899999
Q ss_pred CCcc--cee--eeecc-cCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcC-CCCEE
Q 016187 178 ADRA--AYL--NMFSG-HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA-DSTLA 251 (394)
Q Consensus 178 ~~~~--~~~--~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l 251 (394)
+.++ .+. ..+.+ ......++.|..+.+++.+|...+.+.++|++.... ......+..+..+.++| ...++
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~----~~~svnTk~vqG~tVdp~~~nY~ 211 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD----SVSSVNTKYVQGITVDPFSPNYF 211 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh----hhhhhhhhhcccceecCCCCCce
Confidence 8765 111 12222 233445677888889999999999999999873211 00111233455567788 55565
Q ss_pred EEEeCCCcEEEEE-CCCC-cEEEEeccCC----CCEEEEEECCCCC-eEEEEeC-CCcEEEEeCCCCCc-----------
Q 016187 252 LSGSKDGSVHMVN-ITTG-KVVSSLVSHT----DSIECIGFSRSSP-WAATGSM-DQKLIIWDLQHSLP----------- 312 (394)
Q Consensus 252 ~~g~~dg~i~i~d-~~~~-~~~~~~~~h~----~~i~~v~~~~~~~-~l~s~s~-dg~i~iwd~~~~~~----------- 312 (394)
+ ...||.|-+|| .++- .++..+.... ..+..++|+|... .+++... .++|+++|+...-.
T Consensus 212 c-s~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~~~~~ 290 (783)
T KOG1008|consen 212 C-SNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNSVFVN 290 (783)
T ss_pred e-ccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccccceee
Confidence 5 44599999999 3332 2222222222 2488999999754 4555554 57899999853100
Q ss_pred -ce--eccCC---CCEEEEEEeCCC--CEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEcc
Q 016187 313 -RS--TCDHE---DGVTCLMWLGTS--KYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSA 371 (394)
Q Consensus 313 -~~--~~~~~---~~v~~~~~~~~~--~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~ 371 (394)
.. ...|. ..|.+..|++.. ....++...-.++-+++.. ..+..|.++.+.+-|+-
T Consensus 291 ~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~e----~~~pa~s~p~n~L~~s~ 353 (783)
T KOG1008|consen 291 YESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVHE----EVIPASSNPYNDLIFSF 353 (783)
T ss_pred ecccccccccccccceeecCcCcCCccceeEEeeccCChhhccchh----heecccCCCcccchhhh
Confidence 00 11222 457777777654 2333444444444443321 12334444666666653
No 348
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.11 E-value=1.8e-05 Score=73.39 Aligned_cols=75 Identities=23% Similarity=0.306 Sum_probs=62.7
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccc
Q 016187 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA 182 (394)
Q Consensus 106 h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~ 182 (394)
....|.+++++|+...|+.|..||+|.+||...+-.... ...-..+.++|||+|.++++|+..|.+.+||..-..
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 667899999999999999999999999999876643322 233456789999999999999999999999986443
No 349
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.09 E-value=0.00063 Score=63.38 Aligned_cols=184 Identities=21% Similarity=0.315 Sum_probs=104.3
Q ss_pred cCCcEEEEEEcCCCCcEEEE---ecCCCeEEEEEcCCCeeeE--eecCcccCEEEEEEcCCCCEEE-EEeCCCcEE--EE
Q 016187 63 HSDEVYSVACSPTDATLVAT---GGGDDKGFFWRINQGDWAS--EIQGHKDSVSSLAFSMDGQLLA-SGGLDGLVQ--IW 134 (394)
Q Consensus 63 h~~~v~~~~~~p~~~~~las---g~~d~~v~~w~~~~~~~~~--~~~~h~~~V~~v~~s~~g~~l~-t~s~d~~i~--vw 134 (394)
-...+..-+|+|.+..+... .+....++++++++++... .+.++. ..-+|||||++|+ +...|+... +.
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~---~~P~fspDG~~l~f~~~rdg~~~iy~~ 267 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN---GAPAFSPDGSKLAFSSSRDGSPDIYLM 267 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc---CCccCCCCCCEEEEEECCCCCccEEEE
Confidence 34455666788865443222 1222568899988876444 344444 3568999998765 555666554 55
Q ss_pred eCCCCceEEEEecCCCCEEEEEEcCCCCEEEEec-CCC--eEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeC
Q 016187 135 DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGS-EDS--TVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD 211 (394)
Q Consensus 135 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~d~--~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 211 (394)
|+.++... .+....+--..-.|+|+|+.++-.+ ..| .|.+++.+.+...+. ......-..-.++|+|++++..+.
T Consensus 268 dl~~~~~~-~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ri-T~~~~~~~~p~~SpdG~~i~~~~~ 345 (425)
T COG0823 268 DLDGKNLP-RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRL-TFSGGGNSNPVWSPDGDKIVFESS 345 (425)
T ss_pred cCCCCcce-ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEe-eccCCCCcCccCCCCCCEEEEEec
Confidence 76666533 2443333333567999999775554 444 456666666554322 222222225578999999987764
Q ss_pred C-Cc--EEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEe
Q 016187 212 D-AT--LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS 255 (394)
Q Consensus 212 d-g~--i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~ 255 (394)
. |. |.+.|+.++.....+.... ....-++.++++.++..+
T Consensus 346 ~~g~~~i~~~~~~~~~~~~~lt~~~----~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 346 SGGQWDIDKNDLASGGKIRILTSTY----LNESPSWAPNGRMIMFSS 388 (425)
T ss_pred cCCceeeEEeccCCCCcEEEccccc----cCCCCCcCCCCceEEEec
Confidence 3 44 6666666655433333211 112234566776665443
No 350
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.06 E-value=0.00099 Score=63.18 Aligned_cols=117 Identities=18% Similarity=0.248 Sum_probs=90.3
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEE-EEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccce-
Q 016187 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC-TLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAY- 183 (394)
Q Consensus 106 h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~- 183 (394)
|...|.--+++..+++++.|+.-|.+.+|+-..++... +..+..+.+.....++...++++|+..|.|.++.++....
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 44556666778889999999999999999977665432 2233455566677889999999999999999998765321
Q ss_pred ----eeee-cccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCC
Q 016187 184 ----LNMF-SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222 (394)
Q Consensus 184 ----~~~~-~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 222 (394)
+..+ +.|...|+++.|++++..|++|...|+|.+-.+.+
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 1111 23778999999999999999999999998887765
No 351
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.06 E-value=0.0069 Score=53.87 Aligned_cols=215 Identities=16% Similarity=0.128 Sum_probs=127.8
Q ss_pred EEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEec---
Q 016187 71 ACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG--- 147 (394)
Q Consensus 71 ~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~--- 147 (394)
.|.|..+.++.+--..+.+.-|+..+++.. .+. +.+.+.++..-..+..|+++. .-+.++++.++.....+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccC
Confidence 356666667777667788888887665432 222 223334444444444555553 3467777766655222211
Q ss_pred --CCCCEEEEEEcCCCCEEEEecC-----------CCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCC-C
Q 016187 148 --PGGGVEWVSWHPRGHIVLAGSE-----------DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDD-A 213 (394)
Q Consensus 148 --~~~~v~~~~~~~~~~~l~~~s~-----------d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-g 213 (394)
.....+.+...|+|.+.++... -|.++.++. .+..++.+..+-...+.++||||++.|..+... +
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~ 185 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPAN 185 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCC
Confidence 1134556778888887665444 123444443 455556666666666789999999888776553 6
Q ss_pred cEEEEcCCC--C----ceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCC-cEEEEECCCCcEEEEeccCCCCEEEEEE
Q 016187 214 TLRVWNPKS--G----ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG-SVHMVNITTGKVVSSLVSHTDSIECIGF 286 (394)
Q Consensus 214 ~i~vwd~~~--~----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg-~i~i~d~~~~~~~~~~~~h~~~i~~v~~ 286 (394)
.|.-|++.. + +...... .......-.+++..+|.+.+++..+| .|..|+.. ++++..+......+++++|
T Consensus 186 ~i~r~~~d~~~g~~~~~~~~~~~--~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~F 262 (307)
T COG3386 186 RIHRYDLDPATGPIGGRRGFVDF--DEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAF 262 (307)
T ss_pred eEEEEecCcccCccCCcceEEEc--cCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceE
Confidence 677776542 1 1111111 11223344567778888886555554 89999988 8888888777677777777
Q ss_pred C-CCCCeE
Q 016187 287 S-RSSPWA 293 (394)
Q Consensus 287 ~-~~~~~l 293 (394)
- ++.+.|
T Consensus 263 gG~~~~~L 270 (307)
T COG3386 263 GGPDLNTL 270 (307)
T ss_pred eCCCcCEE
Confidence 5 333433
No 352
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.00 E-value=0.0019 Score=59.56 Aligned_cols=235 Identities=15% Similarity=0.174 Sum_probs=122.2
Q ss_pred CEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCC---C---c
Q 016187 151 GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS---G---E 224 (394)
Q Consensus 151 ~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~---~---~ 224 (394)
.|+.+.|.+...-|++|...|.+.+|.....+... .....+-....+.+- ...++.-.+-|+.. . +
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence 47889999999999999999999999875543221 000000001111110 00111112223221 1 1
Q ss_pred eEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEe--cc------CCCCEEEEEEC-----CCC-
Q 016187 225 NIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSL--VS------HTDSIECIGFS-----RSS- 290 (394)
Q Consensus 225 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~--~~------h~~~i~~v~~~-----~~~- 290 (394)
....+.......++|++++.| +=.++++|..+|++.|.|++...++... .. ....++++.|+ .++
T Consensus 75 gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 111111111235679999986 6679999999999999999888877652 22 23457777775 222
Q ss_pred --CeEEEEeCCCcEEEEeCCC-CCcc-------eeccCCCCEEEEE-EeCCC--------------------CEEEEEeC
Q 016187 291 --PWAATGSMDQKLIIWDLQH-SLPR-------STCDHEDGVTCLM-WLGTS--------------------KYVVTGCV 339 (394)
Q Consensus 291 --~~l~s~s~dg~i~iwd~~~-~~~~-------~~~~~~~~v~~~~-~~~~~--------------------~~l~sg~~ 339 (394)
..|++|...|.+.+|.+.. ...+ ....+...+..+. +..+. +-++..+.
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 5688999999999998742 1111 1113445554443 22221 12344455
Q ss_pred CCeEEEEECCCCeEEEEeecccCceeEEEE-----ccCCCEEEEEeCCCcEEEEeccCCC
Q 016187 340 DGKVRVWDSLSGDCVRTFSGHRDAIQAISV-----SAHQDFLVSVSLDGTARVFEIADFK 394 (394)
Q Consensus 340 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~-----~~~~~~l~s~s~dg~i~iw~~~~~~ 394 (394)
+..++++...+.+..+......-....+.+ ...+..|++-..+|.|++|.+..+|
T Consensus 234 e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk 293 (395)
T PF08596_consen 234 ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK 293 (395)
T ss_dssp SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--
T ss_pred ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCch
Confidence 788999998888776544433223334444 2356788999999999999998765
No 353
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.99 E-value=1.2e-05 Score=65.66 Aligned_cols=142 Identities=16% Similarity=0.211 Sum_probs=93.6
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEE-EeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC--CcceeccCCCCEEE-
Q 016187 249 TLALSGSKDGSVHMVNITTGKVVS-SLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHS--LPRSTCDHEDGVTC- 324 (394)
Q Consensus 249 ~~l~~g~~dg~i~i~d~~~~~~~~-~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~v~~- 324 (394)
..+..-+.||.|.-++++..+... +...|... .....-+.-++.|+.+|.|.+|+.... .....+.-...+.+
T Consensus 31 ~~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~ 107 (238)
T KOG2444|consen 31 HLLRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG 107 (238)
T ss_pred hhhccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceec
Confidence 345566778888877776543211 11112222 122233556899999999999987521 11111111222322
Q ss_pred EEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeeccc-CceeEEEEccCCCEEEEE--eCCCcEEEEeccCC
Q 016187 325 LMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHR-DAIQAISVSAHQDFLVSV--SLDGTARVFEIADF 393 (394)
Q Consensus 325 ~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~s~--s~dg~i~iw~~~~~ 393 (394)
+.-..++.+..+++.+|.|+.|++.-.+.+.....|+ .++..+..+..++.+++. |.|..++.|+++.+
T Consensus 108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 108 IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred cccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 2223445688899999999999999999888878888 777777777788888888 99999999998765
No 354
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.98 E-value=0.012 Score=53.22 Aligned_cols=272 Identities=14% Similarity=0.139 Sum_probs=125.2
Q ss_pred EEcCCCCcEEEEecCCCeEEEE--EcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecC
Q 016187 71 ACSPTDATLVATGGGDDKGFFW--RINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGP 148 (394)
Q Consensus 71 ~~~p~~~~~lasg~~d~~v~~w--~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~ 148 (394)
+|.+++.++|.++..|+.-.+| |+.+++..+.-.+-.+......++|+.+.++=......|+--|+.+.+....+..+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 3556666777766666665554 67777765544332233335667898888765656678999999998877666666
Q ss_pred CCCEEEEEEc--CCCCEEEEec---C-------------------CCeEEEEeCCccceeeeecccCcCeEEEEECCCCC
Q 016187 149 GGGVEWVSWH--PRGHIVLAGS---E-------------------DSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK 204 (394)
Q Consensus 149 ~~~v~~~~~~--~~~~~l~~~s---~-------------------d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 204 (394)
.+-+-...|. .++..++-.- . ...|.-.++.+++....+ .....+..+.|+|...
T Consensus 122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~-~~~~wlgH~~fsP~dp 200 (386)
T PF14583_consen 122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVF-EDTDWLGHVQFSPTDP 200 (386)
T ss_dssp TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEE-EESS-EEEEEEETTEE
T ss_pred cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEE-ecCccccCcccCCCCC
Confidence 6655555664 3344433211 0 112233344444432222 2334556678999544
Q ss_pred eE-EEEeC---CC-cEEEEcCCC-CceEEEEcCCCCcccCeEEEEEcCCCCEEEE-----EeCCCcEEEEECCCCcEEEE
Q 016187 205 TI-CTGSD---DA-TLRVWNPKS-GENIHVIRGHPYHTEGLTCLTISADSTLALS-----GSKDGSVHMVNITTGKVVSS 273 (394)
Q Consensus 205 ~l-~s~~~---dg-~i~vwd~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-----g~~dg~i~i~d~~~~~~~~~ 273 (394)
.+ +-|-. +. .-|||-+.+ +.....+..+. ....+..=-|.|+|..+.- ++.+..|.-+|+.+++...-
T Consensus 201 ~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~ 279 (386)
T PF14583_consen 201 TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRL 279 (386)
T ss_dssp EEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEE
T ss_pred CEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-CCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEE
Confidence 44 44332 22 136675443 33344444332 2334555578899876543 22344567778888754322
Q ss_pred eccCCCCEEEEEECCCCCeEEEEeCCC----------------cEEEEeCCCCCcceeccCCC-----------CEEEEE
Q 016187 274 LVSHTDSIECIGFSRSSPWAATGSMDQ----------------KLIIWDLQHSLPRSTCDHED-----------GVTCLM 326 (394)
Q Consensus 274 ~~~h~~~i~~v~~~~~~~~l~s~s~dg----------------~i~iwd~~~~~~~~~~~~~~-----------~v~~~~ 326 (394)
. ...+..-.-.++++.+++.=+.|. -|.++++........+.|.. .=....
T Consensus 280 ~--~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~ 357 (386)
T PF14583_consen 280 M--EMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPS 357 (386)
T ss_dssp E--EE-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----E
T ss_pred E--eCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCc
Confidence 1 112334455678888877544442 45567776544333333321 123568
Q ss_pred EeCCCCEEEE-EeCCCeEEEE
Q 016187 327 WLGTSKYVVT-GCVDGKVRVW 346 (394)
Q Consensus 327 ~~~~~~~l~s-g~~dg~i~iw 346 (394)
|+||+++|+- ....|...||
T Consensus 358 FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 358 FSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp E-TTSSEEEEEE-TTSS-EEE
T ss_pred cCCCCCEEEEECCCCCCccEE
Confidence 9999987664 4456766665
No 355
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.93 E-value=0.018 Score=53.78 Aligned_cols=195 Identities=15% Similarity=0.147 Sum_probs=99.4
Q ss_pred cEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccc------eeeeecccCcCeEEEEECCCC
Q 016187 130 LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA------YLNMFSGHGSSVTCGDFTPDG 203 (394)
Q Consensus 130 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~------~~~~~~~h~~~v~~~~~~~~~ 203 (394)
.|+||+. .|+.+.++.-..+.+-.+.|..+.. |++...||.+++||+.... .+....-....+....+..+|
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence 4888875 4666666655558899999998654 5566799999999986333 011111111112222333344
Q ss_pred CeEEEEeCCCcEEEEc-CCCCceEEEEcCCCCcc------cCeEE-EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 016187 204 KTICTGSDDATLRVWN-PKSGENIHVIRGHPYHT------EGLTC-LTISADSTLALSGSKDGSVHMVNITTGKVVSSLV 275 (394)
Q Consensus 204 ~~l~s~~~dg~i~vwd-~~~~~~~~~~~~~~~~~------~~i~~-~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~ 275 (394)
-.+++ .++.+.+.. .........+...+... ..... ..++.+....+....++.+.+.+-...+. +
T Consensus 140 ivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i- 213 (410)
T PF04841_consen 140 IVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I- 213 (410)
T ss_pred EEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c-
Confidence 33333 334443332 21110111111100000 00000 12333444444444455555444322111 1
Q ss_pred cCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcc--eeccCCCCEEEEEEeCCCC
Q 016187 276 SHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPR--STCDHEDGVTCLMWLGTSK 332 (394)
Q Consensus 276 ~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~ 332 (394)
...+++..+++||+++++|.-..+|.+.+.+..-.... ...........+.|..+..
T Consensus 214 ~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 214 DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 12468999999999999999999999988865433222 1222234456677766543
No 356
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.93 E-value=0.013 Score=52.15 Aligned_cols=217 Identities=13% Similarity=0.155 Sum_probs=125.7
Q ss_pred EEcCCCC-EEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcC--C
Q 016187 156 SWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRG--H 232 (394)
Q Consensus 156 ~~~~~~~-~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~ 232 (394)
.|.++.. ++.+--..+.|.-|+..+++.. .+. +...+.++..-..+..|+++. .-+.++++.++..+..+.. .
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccC
Confidence 4566655 4455556778888888755422 222 222233333333344444443 3356666655544222211 1
Q ss_pred CCcccCeEEEEEcCCCCEEEEEeC-----------CCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeC-CC
Q 016187 233 PYHTEGLTCLTISADSTLALSGSK-----------DGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSM-DQ 300 (394)
Q Consensus 233 ~~~~~~i~~~~~~~~~~~l~~g~~-----------dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~-dg 300 (394)
.......+-+.+.|+|.+.++... -|.|+.++. .+..+..+..+-..-+.++|||+++.|..+.. .+
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~ 185 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPAN 185 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCC
Confidence 111234556778899988776544 134555554 45666656555566788999999987776655 47
Q ss_pred cEEEEeCCC--C---Ccc--eecc-CCCCEEEEEEeCCCCEEEEEeCCC-eEEEEECCCCeEEEEeecccCceeEEEEcc
Q 016187 301 KLIIWDLQH--S---LPR--STCD-HEDGVTCLMWLGTSKYVVTGCVDG-KVRVWDSLSGDCVRTFSGHRDAIQAISVSA 371 (394)
Q Consensus 301 ~i~iwd~~~--~---~~~--~~~~-~~~~v~~~~~~~~~~~l~sg~~dg-~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~ 371 (394)
.|.-|++.. . ..+ ..+. .....-.++...++.+.+++-.+| .|.+|+.. |+++..+.-....+++++|.-
T Consensus 186 ~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 186 RIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred eEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeC
Confidence 777777652 1 001 1111 122333455566777775555554 89999887 999999887767788888864
Q ss_pred -CCCEEEE
Q 016187 372 -HQDFLVS 378 (394)
Q Consensus 372 -~~~~l~s 378 (394)
+.+.|..
T Consensus 265 ~~~~~L~i 272 (307)
T COG3386 265 PDLNTLYI 272 (307)
T ss_pred CCcCEEEE
Confidence 4454443
No 357
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.90 E-value=4.4e-05 Score=44.08 Aligned_cols=38 Identities=42% Similarity=0.798 Sum_probs=34.1
Q ss_pred eeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 016187 98 DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWD 135 (394)
Q Consensus 98 ~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd 135 (394)
+....+..|...|.++.|++.+.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45567778999999999999999999999999999996
No 358
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.89 E-value=4.9e-05 Score=43.87 Aligned_cols=39 Identities=28% Similarity=0.634 Sum_probs=35.1
Q ss_pred CeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 351 GDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 351 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
++++..+..|...|+++.|.++++++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456677888999999999999999999999999999996
No 359
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.87 E-value=0.0047 Score=57.65 Aligned_cols=190 Identities=16% Similarity=0.196 Sum_probs=106.3
Q ss_pred eEeecCcccCEEEEEEcCCCCEEEEEe---CC-CcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEE-EEecCCCe--
Q 016187 100 ASEIQGHKDSVSSLAFSMDGQLLASGG---LD-GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIV-LAGSEDST-- 172 (394)
Q Consensus 100 ~~~~~~h~~~V~~v~~s~~g~~l~t~s---~d-~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~d~~-- 172 (394)
...+.--...+..-+|+|+++.++-.+ .. ..+.++++.+++....+. ..+.-..-+|+|+|+.| ++...|+.
T Consensus 185 ~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~ 263 (425)
T COG0823 185 QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPD 263 (425)
T ss_pred eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCcc
Confidence 344444456677889999998765443 22 358899999887654443 22233446899999865 45556665
Q ss_pred EEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEe-CCCc--EEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCC
Q 016187 173 VWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGS-DDAT--LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST 249 (394)
Q Consensus 173 i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~dg~--i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 249 (394)
|++.|+..+...+ +..-.+.-..=.|+|+|+.++-.+ ..|. |.+.++..++. ..+... ...-..-.++|+|+
T Consensus 264 iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~---~~~~~~p~~SpdG~ 338 (425)
T COG0823 264 IYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFS---GGGNSNPVWSPDGD 338 (425)
T ss_pred EEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeecc---CCCCcCccCCCCCC
Confidence 5555666555333 221112112446899999886544 4555 45556554443 222211 11112557899999
Q ss_pred EEEEEeCC-Cc--EEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEE
Q 016187 250 LALSGSKD-GS--VHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATG 296 (394)
Q Consensus 250 ~l~~g~~d-g~--i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~ 296 (394)
+++..+.. |. |.+.++.++..+..+ .+......-.+.+++..+...
T Consensus 339 ~i~~~~~~~g~~~i~~~~~~~~~~~~~l-t~~~~~e~ps~~~ng~~i~~~ 387 (425)
T COG0823 339 KIVFESSSGGQWDIDKNDLASGGKIRIL-TSTYLNESPSWAPNGRMIMFS 387 (425)
T ss_pred EEEEEeccCCceeeEEeccCCCCcEEEc-cccccCCCCCcCCCCceEEEe
Confidence 88876643 43 556666555432222 222333334566666655433
No 360
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.84 E-value=0.0006 Score=67.36 Aligned_cols=139 Identities=19% Similarity=0.291 Sum_probs=93.7
Q ss_pred CCEEEEE-eCCCcEEEEECCCCcEEEEeccCCCC-EEEEEECC-----CCCeEEEEeCCCcEEEEeCCCCCc--ce----
Q 016187 248 STLALSG-SKDGSVHMVNITTGKVVSSLVSHTDS-IECIGFSR-----SSPWAATGSMDQKLIIWDLQHSLP--RS---- 314 (394)
Q Consensus 248 ~~~l~~g-~~dg~i~i~d~~~~~~~~~~~~h~~~-i~~v~~~~-----~~~~l~s~s~dg~i~iwd~~~~~~--~~---- 314 (394)
.++++.. .....|+-.|+..|+++.....|... |..++-.. +......|-.+..+..||++-... ..
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3444443 45678999999999999998877654 55543221 122345677788899999875321 11
Q ss_pred eccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeE-EEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 315 TCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDC-VRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 315 ~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
........+|++-..+ .+||.|+.+|.||+||- .|+. ...|.+-+.+|.+|..+.||++|+..+. ..+.+++
T Consensus 573 ~Y~~~~~Fs~~aTt~~-G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~ 645 (794)
T PF08553_consen 573 QYSSKNNFSCFATTED-GYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLID 645 (794)
T ss_pred ccccCCCceEEEecCC-ceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEE
Confidence 1122334667765544 58999999999999994 3433 3356788899999999999999886664 4455554
No 361
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.75 E-value=0.039 Score=51.94 Aligned_cols=239 Identities=15% Similarity=0.196 Sum_probs=122.5
Q ss_pred CEEEEEEcCCCCEEEEE-eCCC----cEEEEeCCCCceEEEE-ecCCCCEEEEEEcCCCCEEEEecC-----------CC
Q 016187 109 SVSSLAFSMDGQLLASG-GLDG----LVQIWDPSSGNLKCTL-EGPGGGVEWVSWHPRGHIVLAGSE-----------DS 171 (394)
Q Consensus 109 ~V~~v~~s~~g~~l~t~-s~d~----~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~s~-----------d~ 171 (394)
.+....+||+|++||-+ +..| .|++.|+.+|+.+... .... ...+.|.++++.++.... ..
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc--cceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 44568899999988744 4444 5999999999776432 2221 223899999886655432 23
Q ss_pred eEEEEeCCcccee--eeecccCcC--eEEEEECCCCCeEEEEeC-C---CcEEEEcCCCC----ceEEEEcCCCCcccCe
Q 016187 172 TVWMWNADRAAYL--NMFSGHGSS--VTCGDFTPDGKTICTGSD-D---ATLRVWNPKSG----ENIHVIRGHPYHTEGL 239 (394)
Q Consensus 172 ~i~iw~~~~~~~~--~~~~~h~~~--v~~~~~~~~~~~l~s~~~-d---g~i~vwd~~~~----~~~~~~~~~~~~~~~i 239 (394)
.|+.|.+.+.... ..+...... ...+..++++++|+..+. . ..+.+.++..+ .....+.. ....+
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~---~~~~~ 279 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP---REDGV 279 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE---SSSS-
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC---CCCce
Confidence 4778887765432 333333322 567888999998764332 2 34777787764 22333322 11223
Q ss_pred EEEEEcCCCCEEEEEe---CCCcEEEEECCCCc---EEEEeccCCCC--EEEEEECCCCCeEE-EEeCCC--cEEEEeCC
Q 016187 240 TCLTISADSTLALSGS---KDGSVHMVNITTGK---VVSSLVSHTDS--IECIGFSRSSPWAA-TGSMDQ--KLIIWDLQ 308 (394)
Q Consensus 240 ~~~~~~~~~~~l~~g~---~dg~i~i~d~~~~~---~~~~~~~h~~~--i~~v~~~~~~~~l~-s~s~dg--~i~iwd~~ 308 (394)
....-...+.+++... ..+.|...++.... ....+..+... +..+.. .+.+|+ ..-.++ .|+++++.
T Consensus 280 ~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 280 EYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT
T ss_pred EEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECC
Confidence 2222222444444332 34567777777654 23345555553 444444 344444 333343 57888887
Q ss_pred -CCCcceecc-CCCCEEEEEEeCCCCEEE-EE-eC--CCeEEEEECCCCeEE
Q 016187 309 -HSLPRSTCD-HEDGVTCLMWLGTSKYVV-TG-CV--DGKVRVWDSLSGDCV 354 (394)
Q Consensus 309 -~~~~~~~~~-~~~~v~~~~~~~~~~~l~-sg-~~--dg~i~iwd~~~~~~~ 354 (394)
......... -...|..+...++...+. +. |. =++++.||+.+++..
T Consensus 358 ~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 358 DGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp -TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred CCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 332222211 122234443334443322 22 21 246777888777653
No 362
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.75 E-value=0.015 Score=52.58 Aligned_cols=211 Identities=15% Similarity=0.197 Sum_probs=116.1
Q ss_pred eEEEEEcCCCeeeEee--cC--cccCEEEEEEcCC----CCEEEEEeC----------CCcEEEEeCCCC-----ceEEE
Q 016187 88 KGFFWRINQGDWASEI--QG--HKDSVSSLAFSMD----GQLLASGGL----------DGLVQIWDPSSG-----NLKCT 144 (394)
Q Consensus 88 ~v~~w~~~~~~~~~~~--~~--h~~~V~~v~~s~~----g~~l~t~s~----------d~~i~vwd~~~~-----~~~~~ 144 (394)
.+++.|..+.+.+..+ .. +...+..+.|..+ -.+|+.|.. .|.|.++++... ++...
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 4566666665554433 21 1122333444433 457776653 288999998874 22211
Q ss_pred -EecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccc-eeeeecc-cCcCeEEEEECCCCCeEEEEeCCCcEEEEcCC
Q 016187 145 -LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA-YLNMFSG-HGSSVTCGDFTPDGKTICTGSDDATLRVWNPK 221 (394)
Q Consensus 145 -~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~-~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 221 (394)
-....++|++++-. .+. |+++ ..+.+.+|++...+ ......- ....++++... +++++.|..-..+.++...
T Consensus 83 ~~~~~~g~V~ai~~~-~~~-lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NGR-LVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYD 157 (321)
T ss_dssp EEEEESS-EEEEEEE-TTE-EEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEE
T ss_pred EEEeecCcceEhhhh-CCE-EEEe-ecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEE
Confidence 12345788888766 344 3333 34889999987766 4333222 22345555443 6699999988888887443
Q ss_pred C-CceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-------C--cEEEEec-cCCCCEEEE---EEC
Q 016187 222 S-GENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT-------G--KVVSSLV-SHTDSIECI---GFS 287 (394)
Q Consensus 222 ~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~-------~--~~~~~~~-~h~~~i~~v---~~~ 287 (394)
. +..+..+... .....++++.+-+++..++++..+|.+.++.... + +...... ...+.|+++ .+.
T Consensus 158 ~~~~~l~~va~d-~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~ 236 (321)
T PF03178_consen 158 EENNKLILVARD-YQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLI 236 (321)
T ss_dssp TTTE-EEEEEEE-SS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS
T ss_pred ccCCEEEEEEec-CCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEee
Confidence 3 3334444321 2234577777775667999999999999987652 2 2222221 234567777 444
Q ss_pred CC--C------CeEEEEeCCCcEEE
Q 016187 288 RS--S------PWAATGSMDQKLII 304 (394)
Q Consensus 288 ~~--~------~~l~s~s~dg~i~i 304 (394)
|. . +.++.++.+|.|-.
T Consensus 237 ~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 237 PRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp --SSSS-TTEEEEEEEEETTS-EEE
T ss_pred ecCCCCcccccceEEEEecCCEEEE
Confidence 51 1 24777888888873
No 363
>PHA02713 hypothetical protein; Provisional
Probab=97.73 E-value=0.0018 Score=62.99 Aligned_cols=188 Identities=12% Similarity=0.126 Sum_probs=96.4
Q ss_pred CCcEEEEecCC------CeEEEEEcCCCeeeEe--ecCcccCEEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCceE
Q 016187 76 DATLVATGGGD------DKGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGLDG-----LVQIWDPSSGNLK 142 (394)
Q Consensus 76 ~~~~lasg~~d------~~v~~w~~~~~~~~~~--~~~h~~~V~~v~~s~~g~~l~t~s~d~-----~i~vwd~~~~~~~ 142 (394)
++.+.+.||.+ ..+..||..+..+... +......... ..-+|...+.||.++ ++..||+.+..+.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~--~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSL--AVIDDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeE--EEECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 34566667753 3466788777766432 2111111112 223577778888764 4788998877654
Q ss_pred EEEe--cCCCCEEEEEEcCCCCEEEEecCCC-----------------------eEEEEeCCccceeeeecccCcCeEEE
Q 016187 143 CTLE--GPGGGVEWVSWHPRGHIVLAGSEDS-----------------------TVWMWNADRAAYLNMFSGHGSSVTCG 197 (394)
Q Consensus 143 ~~~~--~~~~~v~~~~~~~~~~~l~~~s~d~-----------------------~i~iw~~~~~~~~~~~~~h~~~v~~~ 197 (394)
..-. .+......+ .-++++.+.|+.++ .+..||..+.+-...-.-........
T Consensus 381 ~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~ 458 (557)
T PHA02713 381 MLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPG 458 (557)
T ss_pred ECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCc
Confidence 3211 111111112 23577777777542 46778876653221111001111111
Q ss_pred EECCCCCeEEEEeCC------CcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCC--cEEEEECCCCc
Q 016187 198 DFTPDGKTICTGSDD------ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG--SVHMVNITTGK 269 (394)
Q Consensus 198 ~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg--~i~i~d~~~~~ 269 (394)
...-+++..+.|+.+ ..+..||+.+......+...+........+. -++++.++|+.++ ++..||..+.+
T Consensus 459 ~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 459 VVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred EEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecceeehhhcCccccc
Confidence 112246666677654 2467899987222333332222222222222 3688889999888 67777777654
No 364
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.72 E-value=0.0016 Score=64.54 Aligned_cols=139 Identities=17% Similarity=0.342 Sum_probs=95.4
Q ss_pred EEecCCCeEEEEeCCccceeeeecccCcC-eEEEEECCC-------CCeEEEEeCCCcEEEEcCCCCc-eEEEEcCCCC-
Q 016187 165 LAGSEDSTVWMWNADRAAYLNMFSGHGSS-VTCGDFTPD-------GKTICTGSDDATLRVWNPKSGE-NIHVIRGHPY- 234 (394)
Q Consensus 165 ~~~s~d~~i~iw~~~~~~~~~~~~~h~~~-v~~~~~~~~-------~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~- 234 (394)
........++-.|++.++.+..+..|... |. .|.|+ ....+.|-.+..+..||++-.. .+..-..+.+
T Consensus 498 ~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~--~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~ 575 (794)
T PF08553_consen 498 LDPNNPNKLYKMDLERGKVVEEWKVHDDIPVV--DIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYS 575 (794)
T ss_pred ecCCCCCceEEEecCCCcEEEEeecCCCccee--EecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccc
Confidence 33345678999999999999999888654 44 44443 3346778888999999998643 2211112222
Q ss_pred cccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 016187 235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDL 307 (394)
Q Consensus 235 ~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~ 307 (394)
.....+|++.+.+| ++|+|+.+|.||+||-...+....+.+-..+|..|..+.+|+|++..+ +..|.|+++
T Consensus 576 ~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 576 SKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred cCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 23346777776655 578899999999999533333333556678999999999999987554 556777764
No 365
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.70 E-value=0.00059 Score=64.65 Aligned_cols=118 Identities=14% Similarity=0.197 Sum_probs=89.8
Q ss_pred CCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeec-ccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCce---
Q 016187 150 GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS-GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGEN--- 225 (394)
Q Consensus 150 ~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--- 225 (394)
..+..-++...+++++.|+.-|.+++|+-..++....-. +....+....++++..++|.|+..|.|.++-+.....
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL 113 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence 345555677788999999999999999987765433322 2334445567888999999999999999998765432
Q ss_pred EEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 016187 226 IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT 267 (394)
Q Consensus 226 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~ 267 (394)
...-..+..|...|+++.|++++..+++|...|+|..-.+.+
T Consensus 114 ~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 114 DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 222233444677899999999999999999999999888776
No 366
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.00028 Score=65.94 Aligned_cols=94 Identities=22% Similarity=0.289 Sum_probs=74.6
Q ss_pred CCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEE-EEEEcCCCCEEEEEeCCCcEEEEeCCCCceE
Q 016187 64 SDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVS-SLAFSMDGQLLASGGLDGLVQIWDPSSGNLK 142 (394)
Q Consensus 64 ~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~-~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~ 142 (394)
.-.|.-+.|+|. ..++|++..+|.+.+..++ -+-+.+++-|...|+ +++|.|||+.||.|-.||+|++.|+.++..+
T Consensus 20 ~~~i~~~ewnP~-~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPK-MDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCc-cchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 346788899994 6799999999999888887 455667776777777 9999999999999999999999999988776
Q ss_pred EEE-ecCCCCEEEEEEcC
Q 016187 143 CTL-EGPGGGVEWVSWHP 159 (394)
Q Consensus 143 ~~~-~~~~~~v~~~~~~~ 159 (394)
... .....+|.++-|.+
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 542 22344566666653
No 367
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.64 E-value=0.029 Score=51.54 Aligned_cols=262 Identities=14% Similarity=0.197 Sum_probs=134.1
Q ss_pred cCCCCEEEEEe---------CCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeee
Q 016187 116 SMDGQLLASGG---------LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM 186 (394)
Q Consensus 116 s~~g~~l~t~s---------~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~ 186 (394)
|||+++++... ..+.+.|+|+.+++...... ....+....|+|+|+.++... ++.|++++..++...+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~-~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP-PPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS--EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC-CccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 67888776632 23578899999876543322 256788899999999887764 58899998766543322
Q ss_pred e-cc-------c---------CcCeEEEEECCCCCeEEEEeCC-CcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCC
Q 016187 187 F-SG-------H---------GSSVTCGDFTPDGKTICTGSDD-ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADS 248 (394)
Q Consensus 187 ~-~~-------h---------~~~v~~~~~~~~~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 248 (394)
- .| - -..-..+.|+||+++||....| ..|+.+.+.. .......-..+..+.+..-|
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~------~~~~~~~yp~~~~~~YPk~G 152 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPD------YSPPDSQYPEVESIRYPKAG 152 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEE------ESSSTESS-EEEEEE--BTT
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeec------cCCccccCCcccccccCCCC
Confidence 1 11 0 0112457899999998876543 3444443210 00000000012222222111
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEE-E-e---ccCCCCEEEEEECCCCCeE--EEEeCCCc---EEEEeCCCCCcceecc-
Q 016187 249 TLALSGSKDGSVHMVNITTGKVVS-S-L---VSHTDSIECIGFSRSSPWA--ATGSMDQK---LIIWDLQHSLPRSTCD- 317 (394)
Q Consensus 249 ~~l~~g~~dg~i~i~d~~~~~~~~-~-~---~~h~~~i~~v~~~~~~~~l--~s~s~dg~---i~iwd~~~~~~~~~~~- 317 (394)
.-- ..-.+.++|+.+++... . . ..-...+..+.|.+++..| ...+.+.. +.++|..+........
T Consensus 153 ~~n----p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e 228 (353)
T PF00930_consen 153 DPN----PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEE 228 (353)
T ss_dssp S-------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEE
T ss_pred CcC----CceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEe
Confidence 110 01246678888776431 1 1 2234568889999998833 33444443 5556765543332221
Q ss_pred -CCCC---EEEEEEe-CCC-CEEEEEeCCCe--EEEEECCCCeEEEEeecccCceeE-EEEccCCCEEE-EEeCC--CcE
Q 016187 318 -HEDG---VTCLMWL-GTS-KYVVTGCVDGK--VRVWDSLSGDCVRTFSGHRDAIQA-ISVSAHQDFLV-SVSLD--GTA 385 (394)
Q Consensus 318 -~~~~---v~~~~~~-~~~-~~l~sg~~dg~--i~iwd~~~~~~~~~~~~h~~~v~~-l~~~~~~~~l~-s~s~d--g~i 385 (394)
.... -....+. +++ .+|.....+|- |++.+...+. .+.++...-.|.. +.+.++++.|. ++..+ +.-
T Consensus 229 ~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r 307 (353)
T PF00930_consen 229 TSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGER 307 (353)
T ss_dssp ESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSB
T ss_pred cCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCce
Confidence 1111 1233444 444 45555556775 5555665555 4466655666755 67777766544 44442 344
Q ss_pred EEEec
Q 016187 386 RVFEI 390 (394)
Q Consensus 386 ~iw~~ 390 (394)
.+|.+
T Consensus 308 ~lY~v 312 (353)
T PF00930_consen 308 HLYRV 312 (353)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 44443
No 368
>PHA02713 hypothetical protein; Provisional
Probab=97.63 E-value=0.0082 Score=58.54 Aligned_cols=213 Identities=10% Similarity=0.032 Sum_probs=107.1
Q ss_pred eEEEEEcCCCeeeE--eecCcccCEEEEEEcCCCCEEEEEeCC------CcEEEEeCCCCceEEEEecCCCCEEEEEEcC
Q 016187 88 KGFFWRINQGDWAS--EIQGHKDSVSSLAFSMDGQLLASGGLD------GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHP 159 (394)
Q Consensus 88 ~v~~w~~~~~~~~~--~~~~h~~~V~~v~~s~~g~~l~t~s~d------~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 159 (394)
.+..||..+.++.. .++..... .+++. .++..++.||.+ ..+..||+.+..+...-.-+........-.-
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~ 350 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI 350 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE
Confidence 46678888777654 22211111 12222 356677777754 3467888877755321111111111112223
Q ss_pred CCCEEEEecCCC-----eEEEEeCCccceee--eecccCcCeEEEEECCCCCeEEEEeCCC-------------------
Q 016187 160 RGHIVLAGSEDS-----TVWMWNADRAAYLN--MFSGHGSSVTCGDFTPDGKTICTGSDDA------------------- 213 (394)
Q Consensus 160 ~~~~l~~~s~d~-----~i~iw~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~~~dg------------------- 213 (394)
++++.+.|+.++ ++..||..+.+-.. .+.........+. -+|+..+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccc
Confidence 567778887653 47788887653221 1111111111122 2577777777553
Q ss_pred ----cEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCC------CcEEEEECCC-Cc--EEEEeccCCCC
Q 016187 214 ----TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD------GSVHMVNITT-GK--VVSSLVSHTDS 280 (394)
Q Consensus 214 ----~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~d------g~i~i~d~~~-~~--~~~~~~~h~~~ 280 (394)
++..||+.+++ ...+...+. .....-...-++++.+.|+.+ ..+..||..+ .+ .+..+......
T Consensus 429 ~~~~~ve~YDP~td~-W~~v~~m~~--~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~ 505 (557)
T PHA02713 429 HSSNKVIRYDTVNNI-WETLPNFWT--GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA 505 (557)
T ss_pred cccceEEEECCCCCe-EeecCCCCc--ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc
Confidence 47778887754 222221111 111111223356777777754 2467888886 33 33333333333
Q ss_pred EEEEEECCCCCeEEEEeCCC--cEEEEeCCC
Q 016187 281 IECIGFSRSSPWAATGSMDQ--KLIIWDLQH 309 (394)
Q Consensus 281 i~~v~~~~~~~~l~s~s~dg--~i~iwd~~~ 309 (394)
...+.+ ++.+.+.|+.++ .+..||+.+
T Consensus 506 ~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 506 LHTILH--DNTIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred ceeEEE--CCEEEEEeeecceeehhhcCccc
Confidence 333333 567788888887 566666654
No 369
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.62 E-value=0.0011 Score=61.03 Aligned_cols=136 Identities=18% Similarity=0.366 Sum_probs=94.7
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCe-------EEEEeCCCcEEEEeCCCCCc---ceeccC-
Q 016187 250 LALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPW-------AATGSMDQKLIIWDLQHSLP---RSTCDH- 318 (394)
Q Consensus 250 ~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~-------l~s~s~dg~i~iwd~~~~~~---~~~~~~- 318 (394)
++..+..-..|+-.|+..|+++....-+.+ |+-+.+.|+... -+.|-.+..|.-||++-... .....|
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 455666778899999999999998877766 777778886532 23466688899999873221 111111
Q ss_pred ---CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeE-EEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 319 ---EDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDC-VRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 319 ---~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
.....|.+-. ...++++||.+|.|++||- .+.. ...|.|-+.+|..|..+.+|++|+..+ +..+.+-+
T Consensus 427 y~~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~ 498 (644)
T KOG2395|consen 427 YSTKNNFSCFATT-ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLID 498 (644)
T ss_pred cccccccceeeec-CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEE
Confidence 1224454433 4459999999999999996 4444 345889999999999999999988655 34444433
No 370
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.61 E-value=0.064 Score=50.45 Aligned_cols=238 Identities=17% Similarity=0.161 Sum_probs=117.0
Q ss_pred EEEEEEcCCCCcEEEEe----cCCCeEEEEEcCCCeeeEe-ecCcccCEEEEEEcCCCCEEEEEeCCC-----------c
Q 016187 67 VYSVACSPTDATLVATG----GGDDKGFFWRINQGDWASE-IQGHKDSVSSLAFSMDGQLLASGGLDG-----------L 130 (394)
Q Consensus 67 v~~~~~~p~~~~~lasg----~~d~~v~~w~~~~~~~~~~-~~~h~~~V~~v~~s~~g~~l~t~s~d~-----------~ 130 (394)
+...+++|++..++.+- +...++++.|+++++.+.. +..- .. ..+.|.++++.|+-...+. .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~-~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KF-SSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ES-EEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-cc-ceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 34567899766554442 2234589999999987653 2321 11 2399999998776555433 3
Q ss_pred EEEEeCCCCceE--EEEecCCCC--EEEEEEcCCCCEEEEecC---C-CeEEEEeCCcc----ceeeeecccCcCeE-EE
Q 016187 131 VQIWDPSSGNLK--CTLEGPGGG--VEWVSWHPRGHIVLAGSE---D-STVWMWNADRA----AYLNMFSGHGSSVT-CG 197 (394)
Q Consensus 131 i~vwd~~~~~~~--~~~~~~~~~--v~~~~~~~~~~~l~~~s~---d-~~i~iw~~~~~----~~~~~~~~h~~~v~-~~ 197 (394)
|+.|.+.+.... ..+...... ...+..++++++++..+. + ..+++.+.... ...+.+......+. .+
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 788888776432 445554443 567888999997764332 2 45777787764 22233333332332 23
Q ss_pred EECCCCCeEEEEe---CCCcEEEEcCCCCce--EE-EEcCCCCcccCeEEEEEcCCCC-EEEEEeCCC--cEEEEECCCC
Q 016187 198 DFTPDGKTICTGS---DDATLRVWNPKSGEN--IH-VIRGHPYHTEGLTCLTISADST-LALSGSKDG--SVHMVNITTG 268 (394)
Q Consensus 198 ~~~~~~~~l~s~~---~dg~i~vwd~~~~~~--~~-~~~~~~~~~~~i~~~~~~~~~~-~l~~g~~dg--~i~i~d~~~~ 268 (394)
... .+.+++... ..+.|...++..... .. .+-. +...+.-..+...+. +++....++ .|+++++..+
T Consensus 284 ~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~---~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~ 359 (414)
T PF02897_consen 284 DHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIP---EDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDG 359 (414)
T ss_dssp EEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE-----SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-T
T ss_pred Ecc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcC---CCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCC
Confidence 222 333333332 235566666665542 11 2221 222222222333333 444444444 5788898834
Q ss_pred cEEEEecc-CCCCEEEEEECCCCCeEE--EEeC--CCcEEEEeCCCC
Q 016187 269 KVVSSLVS-HTDSIECIGFSRSSPWAA--TGSM--DQKLIIWDLQHS 310 (394)
Q Consensus 269 ~~~~~~~~-h~~~i~~v~~~~~~~~l~--s~s~--dg~i~iwd~~~~ 310 (394)
.....+.. -.+.|..+...++...+. ..|. -+++.-||+.+.
T Consensus 360 ~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~ 406 (414)
T PF02897_consen 360 KESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATG 406 (414)
T ss_dssp EEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTT
T ss_pred cEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 44433332 233455555445444322 2221 234555566544
No 371
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.59 E-value=0.00014 Score=59.55 Aligned_cols=142 Identities=19% Similarity=0.175 Sum_probs=88.8
Q ss_pred EEEEecCCCeEEEEeCCcccee-eeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEE
Q 016187 163 IVLAGSEDSTVWMWNADRAAYL-NMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTC 241 (394)
Q Consensus 163 ~l~~~s~d~~i~iw~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~ 241 (394)
.+...+.|+.++-++++..+.. +.-.-|..-. ..-.-+..++.|+.+|.|.+|...-......+ .......+.+
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~---~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~--~~s~~e~i~~ 106 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQ---RVVTASAKLMVGTSDGAVYVFNWNLEGAHSDR--VCSGEESIDL 106 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcce---eecccCceEEeecccceEEEecCCccchHHHh--hhccccccee
Confidence 4556677888887776543321 1111111110 11123567899999999999987521110000 0011122322
Q ss_pred E-EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCC-CCEEEEEECCCCCeEEEE--eCCCcEEEEeCCC
Q 016187 242 L-TISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHT-DSIECIGFSRSSPWAATG--SMDQKLIIWDLQH 309 (394)
Q Consensus 242 ~-~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~-~~i~~v~~~~~~~~l~s~--s~dg~i~iwd~~~ 309 (394)
. ....++.+..+++.||.|+.|++.-++.+.....|. .++.....+..+.+++.+ |.|..++.|++..
T Consensus 107 ~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 107 GIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 2 223345688899999999999999998887777777 677777777777888887 8888888888764
No 372
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00041 Score=64.88 Aligned_cols=93 Identities=17% Similarity=0.272 Sum_probs=73.8
Q ss_pred CCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeE-EEEECCCCCeEEEEeCCCcEEEEcCCCCceEEE
Q 016187 150 GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVT-CGDFTPDGKTICTGSDDATLRVWNPKSGENIHV 228 (394)
Q Consensus 150 ~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 228 (394)
-.+..+-|+|.-.++|.+..+|.+.+..++ -+.+-.++-|+..++ +++|.|||+.||.|-.||+|++.|+.++..+..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 357778999999999999999999998887 555667776777777 999999999999999999999999999876654
Q ss_pred EcCCCCcccCeEEEEEc
Q 016187 229 IRGHPYHTEGLTCLTIS 245 (394)
Q Consensus 229 ~~~~~~~~~~i~~~~~~ 245 (394)
... .....|.++.|+
T Consensus 100 ~~~--s~e~~is~~~w~ 114 (665)
T KOG4640|consen 100 FLF--SVETDISKGIWD 114 (665)
T ss_pred ccc--ccccchheeecc
Confidence 211 123456666665
No 373
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.57 E-value=0.0088 Score=58.33 Aligned_cols=149 Identities=17% Similarity=0.226 Sum_probs=85.0
Q ss_pred CcEEEEEEcCCCCcEEEEec-----CCCeEEEEEcC-CCeeeEeecCcccCEEEEEEcCCCCEEEEEeCC-CcEEEE---
Q 016187 65 DEVYSVACSPTDATLVATGG-----GDDKGFFWRIN-QGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD-GLVQIW--- 134 (394)
Q Consensus 65 ~~v~~~~~~p~~~~~lasg~-----~d~~v~~w~~~-~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d-~~i~vw--- 134 (394)
..+...+.+|++..+.++.. .|..-.||-.. .++....+.+. ..+.-.|+|+|+.|++.+.. ..+++.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccC
Confidence 35678889997666555542 34444555433 22333333443 37889999999988777533 222232
Q ss_pred --------eCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEE---EeCCccce-e---eee-cccCcCeEEEE
Q 016187 135 --------DPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWM---WNADRAAY-L---NMF-SGHGSSVTCGD 198 (394)
Q Consensus 135 --------d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~i---w~~~~~~~-~---~~~-~~h~~~v~~~~ 198 (394)
++..++... ...+.|..+.|+|+|..++... ++.|++ -....+.. + ..+ .+-...+..+.
T Consensus 428 ~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~ 503 (591)
T PRK13616 428 ATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLD 503 (591)
T ss_pred CCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccce
Confidence 333332221 2245799999999999776655 467766 33333331 1 112 22233457789
Q ss_pred ECCCCCeEEEEeCCCcEEEEcC
Q 016187 199 FTPDGKTICTGSDDATLRVWNP 220 (394)
Q Consensus 199 ~~~~~~~l~s~~~dg~i~vwd~ 220 (394)
|.+++.++ .+..++.-.+|.+
T Consensus 504 W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 504 WRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred EecCCEEE-EEecCCCCceEEE
Confidence 99988855 5555555555654
No 374
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.55 E-value=0.0081 Score=43.90 Aligned_cols=101 Identities=18% Similarity=0.178 Sum_probs=66.7
Q ss_pred EEEEEEcC---CCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEE
Q 016187 67 VYSVACSP---TDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC 143 (394)
Q Consensus 67 v~~~~~~p---~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~ 143 (394)
|.++++.+ ++..-|..|+.|..||+|+- .+.+..+.. .+.|++++-... .+++-+..+|+|-+|+-....+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlWR- 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLWR- 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcceeee-
Confidence 66777655 23456778999999999984 456666664 456778877665 67888999999999986433332
Q ss_pred EEecCCCCEEEEEEcC-CC---CEEEEecCCCeEE
Q 016187 144 TLEGPGGGVEWVSWHP-RG---HIVLAGSEDSTVW 174 (394)
Q Consensus 144 ~~~~~~~~v~~~~~~~-~~---~~l~~~s~d~~i~ 174 (394)
++.. ..+.++++.. ++ ..|++|-.+|.|-
T Consensus 77 -iKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 -IKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -eccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2322 2355555443 32 2677777777654
No 375
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.55 E-value=0.012 Score=42.95 Aligned_cols=91 Identities=20% Similarity=0.281 Sum_probs=62.8
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEe
Q 016187 249 TLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWL 328 (394)
Q Consensus 249 ~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~ 328 (394)
+.|++|+.|..|++|+ ....+..+.. ++.|.++.-... ..++.+-..|+|-+|+-....=+ ......++++.+.
T Consensus 16 ~eLlvGs~D~~IRvf~--~~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlWR--iKSK~~~~~~~~~ 89 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFK--GDEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLWR--IKSKNQVTSMAFY 89 (111)
T ss_pred ceEEEecCCcEEEEEe--CCcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcceeee--eccCCCeEEEEEE
Confidence 6889999999999998 3456666654 456666666555 56888899999999986433222 2233346677665
Q ss_pred CCC----CEEEEEeCCCeEEE
Q 016187 329 GTS----KYVVTGCVDGKVRV 345 (394)
Q Consensus 329 ~~~----~~l~sg~~dg~i~i 345 (394)
.-. +-|++|-.+|+|-+
T Consensus 90 D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 90 DINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred cCCCCCceEEEEEecCCeEEe
Confidence 432 37889988988753
No 376
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.54 E-value=0.017 Score=56.33 Aligned_cols=186 Identities=17% Similarity=0.148 Sum_probs=100.1
Q ss_pred CcccCEEEEEEcCCCCEEEEEe------CCC--cEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCC------
Q 016187 105 GHKDSVSSLAFSMDGQLLASGG------LDG--LVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED------ 170 (394)
Q Consensus 105 ~h~~~V~~v~~s~~g~~l~t~s------~d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d------ 170 (394)
+....+.+.++||+|+.++... .|. .|.+++. .+.......+ .....-.|+|++..+++.+..
T Consensus 347 g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 347 GQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRV 423 (591)
T ss_pred ccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecC--CCCCCceECCCCCceEEEecCcceEEE
Confidence 3334688999999999876554 244 4444454 2222222222 236778999998766665432
Q ss_pred ------CeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEE---EcCCCCceEEEEc----CCCCccc
Q 016187 171 ------STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRV---WNPKSGENIHVIR----GHPYHTE 237 (394)
Q Consensus 171 ------~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~v---wd~~~~~~~~~~~----~~~~~~~ 237 (394)
+.+++..+..+...+ .....|..+.|+|||+.++... +|.|.+ -....|. ..+. .......
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~--~~l~~~~~l~~~l~~ 497 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ--YALTNPREVGPGLGD 497 (591)
T ss_pred eccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc--eeecccEEeecccCC
Confidence 233333443332221 2245699999999999988765 477766 3333443 1111 0011122
Q ss_pred CeEEEEEcCCCCEEEEEeCCCc--EEEEECCCCcEEEEecc--CCCCEEEEEECCCCCeEEEEeCCCcEE
Q 016187 238 GLTCLTISADSTLALSGSKDGS--VHMVNITTGKVVSSLVS--HTDSIECIGFSRSSPWAATGSMDQKLI 303 (394)
Q Consensus 238 ~i~~~~~~~~~~~l~~g~~dg~--i~i~d~~~~~~~~~~~~--h~~~i~~v~~~~~~~~l~s~s~dg~i~ 303 (394)
.+..+.|.+++.++ ++..++. +...++.... ...+.. ...++.+|+-+++ -++....++.+.
T Consensus 498 ~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~-~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 498 TAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSN-SDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred ccccceEecCCEEE-EEecCCCCceEEEecCCcc-ccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 35778899998865 4444443 4444443222 111122 2456666766653 344445555443
No 377
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.53 E-value=0.048 Score=46.98 Aligned_cols=170 Identities=14% Similarity=0.211 Sum_probs=109.8
Q ss_pred ecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCC-CCEEEEEEcCCCCEEEEecCCCeEEEEeCCcc
Q 016187 103 IQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPG-GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA 181 (394)
Q Consensus 103 ~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~ 181 (394)
+.|-+..|.++.|+|+.+.|++......-.||=...|+.+.+++-.. .....+.|...+.+.++--.++.+.++.+...
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 45556669999999999999999888888888778899887765321 23445667777777777777888888765432
Q ss_pred ce----------eeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceE---EEEcCCC----CcccCeEEEEE
Q 016187 182 AY----------LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENI---HVIRGHP----YHTEGLTCLTI 244 (394)
Q Consensus 182 ~~----------~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~----~~~~~i~~~~~ 244 (394)
.. +..........-.++|.|..+.|+.+=.-.-++|+.+...... +....+. .....+..+.+
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 11 0111111345567899998888888877777777765533211 1111110 11234566777
Q ss_pred cC-CCCEEEEEeCCCcEEEEECCCCcEEEE
Q 016187 245 SA-DSTLALSGSKDGSVHMVNITTGKVVSS 273 (394)
Q Consensus 245 ~~-~~~~l~~g~~dg~i~i~d~~~~~~~~~ 273 (394)
++ .+.+++-+.+++.+.-.|... .++..
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~G-~~~~~ 269 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLSG-EVIEL 269 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecCC-Ceeee
Confidence 75 566777788888888888643 33433
No 378
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.52 E-value=0.00052 Score=68.02 Aligned_cols=100 Identities=15% Similarity=0.297 Sum_probs=77.6
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCCcc--eeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeE
Q 016187 289 SSPWAATGSMDQKLIIWDLQHSLPR--STCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQA 366 (394)
Q Consensus 289 ~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 366 (394)
.+.+++.|+..|.+...|+...... .-..-..+|++++|+.+|+.++.|-.+|.|.+||..+++.++.+..|..+.+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 4557888999999999888765432 11223467999999999999999999999999999999999999888777666
Q ss_pred EEEc---cCCCEEEEEeCCCcEEEEec
Q 016187 367 ISVS---AHQDFLVSVSLDGTARVFEI 390 (394)
Q Consensus 367 l~~~---~~~~~l~s~s~dg~i~iw~~ 390 (394)
+-+. .++..++++..-|. +|++
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 5443 45567777777775 6764
No 379
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.48 E-value=0.12 Score=50.18 Aligned_cols=271 Identities=13% Similarity=0.133 Sum_probs=152.0
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceEEEEecCC-CCEEE----------EEEcCCCCEEEEecCCCeEEEEeCCccceeeee
Q 016187 119 GQLLASGGLDGLVQIWDPSSGNLKCTLEGPG-GGVEW----------VSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMF 187 (394)
Q Consensus 119 g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~-~~v~~----------~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~ 187 (394)
+.+++.++.++.|.-.|..+|+.+-.+.... ..+.. +++ .+..++.++.|+.+.-.|..+++.+-..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4567777778899999999998876654211 11111 111 1345777888999999999988876443
Q ss_pred cc--cC--cCeEEEEECCCCCeEEEEe------CCCcEEEEcCCCCceEEEEcCCCCc----------------------
Q 016187 188 SG--HG--SSVTCGDFTPDGKTICTGS------DDATLRVWNPKSGENIHVIRGHPYH---------------------- 235 (394)
Q Consensus 188 ~~--h~--~~v~~~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~~---------------------- 235 (394)
.. +. ..+++.-..-++ .++.+. .+|.|.-+|.++|+.+-.+...+..
T Consensus 147 ~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~ 225 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG 225 (527)
T ss_pred ccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence 32 11 111110000134 444443 2689999999999876554322110
Q ss_pred -----cc-C-eEEEEEcCCCCEEEEEeCC-----C-----------cEEEEECCCCcEEEEecc--CCC-------CEEE
Q 016187 236 -----TE-G-LTCLTISADSTLALSGSKD-----G-----------SVHMVNITTGKVVSSLVS--HTD-------SIEC 283 (394)
Q Consensus 236 -----~~-~-i~~~~~~~~~~~l~~g~~d-----g-----------~i~i~d~~~~~~~~~~~~--h~~-------~i~~ 283 (394)
.. . -..+++.|+..+++.+..+ + +|.-.|+++|+..=.++. |.. ...-
T Consensus 226 ~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l 305 (527)
T TIGR03075 226 DAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMIL 305 (527)
T ss_pred CccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEE
Confidence 00 0 1234677766666666522 2 677788889987654443 211 1111
Q ss_pred EEECCCCC---eEEEEeCCCcEEEEeCCCCCcce--------ec----cCC-------------------CC--------
Q 016187 284 IGFSRSSP---WAATGSMDQKLIIWDLQHSLPRS--------TC----DHE-------------------DG-------- 321 (394)
Q Consensus 284 v~~~~~~~---~l~s~s~dg~i~iwd~~~~~~~~--------~~----~~~-------------------~~-------- 321 (394)
+.+..+++ .++.+..+|.+.+.|-.+.+... .. ... ..
T Consensus 306 ~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~G 385 (527)
T TIGR03075 306 FDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLG 385 (527)
T ss_pred EEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCcC
Confidence 22334554 67788889988888876543310 00 000 00
Q ss_pred ---EEEEEEeCCCCEEEEEeC---------------------------------CCeEEEEECCCCeEEEEeecccCcee
Q 016187 322 ---VTCLMWLGTSKYVVTGCV---------------------------------DGKVRVWDSLSGDCVRTFSGHRDAIQ 365 (394)
Q Consensus 322 ---v~~~~~~~~~~~l~sg~~---------------------------------dg~i~iwd~~~~~~~~~~~~h~~~v~ 365 (394)
-..+++.|+..++..... -|.|.-+|+.+|+.+-+.........
T Consensus 386 g~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~ 465 (527)
T TIGR03075 386 GKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDFPLWG 465 (527)
T ss_pred CCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCCCCCCC
Confidence 011345554444433222 25688889999988776653221122
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 366 AISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 366 ~l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
.. +.-.+.+++.++.+|.++.+|.++-
T Consensus 466 ~~-l~t~g~lvf~g~~~G~l~a~D~~TG 492 (527)
T TIGR03075 466 GV-LATAGDLVFYGTLEGYFKAFDAKTG 492 (527)
T ss_pred cc-eEECCcEEEEECCCCeEEEEECCCC
Confidence 22 2224557777888999999997764
No 380
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.47 E-value=0.0076 Score=54.57 Aligned_cols=172 Identities=15% Similarity=0.197 Sum_probs=103.4
Q ss_pred CcEEEEcCCCCceEEEEcCCCCcccCeEE---EEEcCC----CCEEEEEeC----------CCcEEEEECCCC----cEE
Q 016187 213 ATLRVWNPKSGENIHVIRGHPYHTEGLTC---LTISAD----STLALSGSK----------DGSVHMVNITTG----KVV 271 (394)
Q Consensus 213 g~i~vwd~~~~~~~~~~~~~~~~~~~i~~---~~~~~~----~~~l~~g~~----------dg~i~i~d~~~~----~~~ 271 (394)
..|++.|..+.+.+..+.-.+ .+.+++ +.+..+ ..++++|.. .|.|.++++... ..+
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~--~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l 79 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEP--NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKL 79 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEET--TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EE
T ss_pred cEEEEEeCCCCeEEEEEECCC--CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEE
Confidence 357888887777665543221 122333 334432 467776653 288999999884 222
Q ss_pred EEe--ccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC-cceecc--CCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 016187 272 SSL--VSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSL-PRSTCD--HEDGVTCLMWLGTSKYVVTGCVDGKVRVW 346 (394)
Q Consensus 272 ~~~--~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~--~~~~v~~~~~~~~~~~l~sg~~dg~i~iw 346 (394)
..+ ....++|+++.-- ++ .|+.+ ..++|.+|++.... ...... ....+.++... +++++.|..-..+.++
T Consensus 80 ~~i~~~~~~g~V~ai~~~-~~-~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~ 154 (321)
T PF03178_consen 80 KLIHSTEVKGPVTAICSF-NG-RLVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLL 154 (321)
T ss_dssp EEEEEEEESS-EEEEEEE-TT-EEEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEE
T ss_pred EEEEEEeecCcceEhhhh-CC-EEEEe-ecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEE
Confidence 221 2346889888766 33 33333 35889999987665 333322 23356666554 5599999988888877
Q ss_pred ECCC-CeEEEEee--cccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 347 DSLS-GDCVRTFS--GHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 347 d~~~-~~~~~~~~--~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
.... ...+..+. .....++++.|-++++.++.+..+|.+.++...
T Consensus 155 ~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 155 RYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 4332 33333333 234557888887666799999999999999865
No 381
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.45 E-value=0.034 Score=54.23 Aligned_cols=218 Identities=17% Similarity=0.231 Sum_probs=113.4
Q ss_pred CcEEEEecCC------CeEEEEEcCCCeeeEeecC-cccCEEEEEEcCCCCEEEEEeCC------CcEEEEeCCCCceEE
Q 016187 77 ATLVATGGGD------DKGFFWRINQGDWASEIQG-HKDSVSSLAFSMDGQLLASGGLD------GLVQIWDPSSGNLKC 143 (394)
Q Consensus 77 ~~~lasg~~d------~~v~~w~~~~~~~~~~~~~-h~~~V~~v~~s~~g~~l~t~s~d------~~i~vwd~~~~~~~~ 143 (394)
+.+++.||.+ ..+..+|..++++.....- +...-.++++. +|...++||.| .++..||..+.++..
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~ 363 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP 363 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec
Confidence 4577777776 3567888888766543221 22222334433 46778889888 356788888777654
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEecCCC-----eEEEEeCCccceeeeecccCcCeEEEE-ECCCCCeEEEEeCCC----
Q 016187 144 TLEGPGGGVEWVSWHPRGHIVLAGSEDS-----TVWMWNADRAAYLNMFSGHGSSVTCGD-FTPDGKTICTGSDDA---- 213 (394)
Q Consensus 144 ~~~~~~~~v~~~~~~~~~~~l~~~s~d~-----~i~iw~~~~~~~~~~~~~h~~~v~~~~-~~~~~~~l~s~~~dg---- 213 (394)
.-.-.......-.-.-.|.+.++|+.|| ++..||..+.+-...- .........+ ..-+|+..+.|+.++
T Consensus 364 ~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va-~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~ 442 (571)
T KOG4441|consen 364 VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA-PMLTRRSGHGVAVLGGKLYIIGGGDGSSNC 442 (571)
T ss_pred cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccC-CCCcceeeeEEEEECCEEEEEcCcCCCccc
Confidence 2111111111111122577888998886 4667877665421111 1111111111 223677778887554
Q ss_pred --cEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCc-----EEEEECCCCcEE--EEeccCCCCEEEE
Q 016187 214 --TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGS-----VHMVNITTGKVV--SSLVSHTDSIECI 284 (394)
Q Consensus 214 --~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~-----i~i~d~~~~~~~--~~~~~h~~~i~~v 284 (394)
++..||+.+++-. .+........... ...-++.+++.|+.|+. +..+|..+.+-. ..+......+..+
T Consensus 443 l~sve~YDP~t~~W~-~~~~M~~~R~~~g--~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~ 519 (571)
T KOG4441|consen 443 LNSVECYDPETNTWT-LIAPMNTRRSGFG--VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVV 519 (571)
T ss_pred cceEEEEcCCCCcee-ecCCcccccccce--EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEE
Confidence 5678898876521 1111111111111 22235778888887763 667887766532 2222222222222
Q ss_pred EECCCCCeEEEEeCCCc
Q 016187 285 GFSRSSPWAATGSMDQK 301 (394)
Q Consensus 285 ~~~~~~~~l~s~s~dg~ 301 (394)
.. ++...+.|+.||.
T Consensus 520 ~~--~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 520 VL--GGKLYAVGGFDGN 534 (571)
T ss_pred EE--CCEEEEEecccCc
Confidence 22 3556677776653
No 382
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.43 E-value=0.16 Score=50.78 Aligned_cols=318 Identities=15% Similarity=0.162 Sum_probs=166.8
Q ss_pred CcEEEEEEcCC--CCc---EEEEecCCCeEEEEEc-CCCeeeEe--ecC--cccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 016187 65 DEVYSVACSPT--DAT---LVATGGGDDKGFFWRI-NQGDWASE--IQG--HKDSVSSLAFSMDGQLLASGGLDGLVQIW 134 (394)
Q Consensus 65 ~~v~~~~~~p~--~~~---~lasg~~d~~v~~w~~-~~~~~~~~--~~~--h~~~V~~v~~s~~g~~l~t~s~d~~i~vw 134 (394)
.+|-|+.++|. +.. ++|-|..+..+++--. .....+.. +.+ -...|--.+|-.|..+|.++..||.+.-+
T Consensus 531 ~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~f 610 (1096)
T KOG1897|consen 531 YEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYF 610 (1096)
T ss_pred ceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEE
Confidence 57889988875 333 7888866665544322 22221111 111 12345556666678899999999998765
Q ss_pred --eCCCCceEEE--EecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCC--CCeEEE
Q 016187 135 --DPSSGNLKCT--LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPD--GKTICT 208 (394)
Q Consensus 135 --d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s 208 (394)
|..+|..... ..-...|+.--.|+..+..-+-+..|.-..+|..+..-....+.-.... .-+.|+.+ ...|++
T Consensus 611 v~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~-~~c~f~s~a~~d~l~~ 689 (1096)
T KOG1897|consen 611 VLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVN-HMCPFNSDAYPDSLAS 689 (1096)
T ss_pred EEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhh-hhcccccccCCceEEE
Confidence 4555543211 1122345555566655554444445555555554433221111100000 01123321 234555
Q ss_pred EeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEe-----------CC---CcEEEEECCCCcEEEEe
Q 016187 209 GSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS-----------KD---GSVHMVNITTGKVVSSL 274 (394)
Q Consensus 209 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~-----------~d---g~i~i~d~~~~~~~~~~ 274 (394)
+. .+.+++--+..-+.++.-. .+. ......+++.+....+.+.+ .. ..++++|-.+-+.+...
T Consensus 690 ~~-~~~l~i~tid~iqkl~irt-vpl-~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~h 766 (1096)
T KOG1897|consen 690 AN-GGALTIGTIDEIQKLHIRT-VPL-GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSH 766 (1096)
T ss_pred ec-CCceEEEEecchhhcceee-ecC-CCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeec
Confidence 44 3456666554333322211 111 12233344444222222221 11 23566666665554432
Q ss_pred ccC----CCCEEEEEECCC-CCeEEEEe----------CCCcEEEEeCCCCCcceeccC----CCCEEEEEEeCCCCEEE
Q 016187 275 VSH----TDSIECIGFSRS-SPWAATGS----------MDQKLIIWDLQHSLPRSTCDH----EDGVTCLMWLGTSKYVV 335 (394)
Q Consensus 275 ~~h----~~~i~~v~~~~~-~~~l~s~s----------~dg~i~iwd~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~ 335 (394)
+-. .-.|.++.|..+ +.+++.|. ..|+|.+|..... ......| .+.+.++.- -++++||
T Consensus 767 ef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~-~~L~~v~e~~v~Gav~aL~~-fngkllA 844 (1096)
T KOG1897|consen 767 EFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEEL-NSLELVAETVVKGAVYALVE-FNGKLLA 844 (1096)
T ss_pred cccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecC-Cceeeeeeeeeccceeehhh-hCCeEEE
Confidence 211 123455568777 66777664 2467777766541 1111122 233444332 2455554
Q ss_pred EEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEec
Q 016187 336 TGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEI 390 (394)
Q Consensus 336 sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~ 390 (394)
+-...|++|+..+.+.++.-..|..++..+...-.+..++.|..-+++.+-..
T Consensus 845 --~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y 897 (1096)
T KOG1897|consen 845 --GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQY 897 (1096)
T ss_pred --ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEE
Confidence 45788999999888888777788889999999999999999988888776543
No 383
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.0042 Score=57.26 Aligned_cols=141 Identities=19% Similarity=0.401 Sum_probs=97.5
Q ss_pred EEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCC-------eEEEEeCCCcEEEEcCCCCce--EEEEcCCC
Q 016187 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK-------TICTGSDDATLRVWNPKSGEN--IHVIRGHP 233 (394)
Q Consensus 163 ~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~-------~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~ 233 (394)
+|.++.....++-.|++.++.+..+.-|.. |+-+.+.|+.+ .-+.|-.|..|.-||++-... +.....+.
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 445566667888889999999999988876 66677887653 234566788999999985332 22333333
Q ss_pred Cccc-CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE-EEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 016187 234 YHTE-GLTCLTISADSTLALSGSKDGSVHMVNITTGKV-VSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDL 307 (394)
Q Consensus 234 ~~~~-~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~-~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~ 307 (394)
+... ...|.+... ..++++|+.+|.|++||- .++. -..+.+-..+|..|..+.+|.|++..+ +..+.+-++
T Consensus 427 y~~k~nFsc~aTT~-sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 427 YSTKNNFSCFATTE-SGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred cccccccceeeecC-CceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 3222 344544443 457889999999999997 4433 334566778999999999999877543 566776665
No 384
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.32 E-value=0.1 Score=46.01 Aligned_cols=219 Identities=18% Similarity=0.237 Sum_probs=120.1
Q ss_pred CCCEEEEecCCCeEEEEeCCc-cceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEc--------
Q 016187 160 RGHIVLAGSEDSTVWMWNADR-AAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR-------- 230 (394)
Q Consensus 160 ~~~~l~~~s~d~~i~iw~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-------- 230 (394)
.++.|+.|+.+| +++++... ....+.. +...|..+...|+-+.|+.-+ |+.+.++++..-.......
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 467888898888 89998832 2222222 233488899988777666654 4999999986543322100
Q ss_pred ---CCCCcccCeEEEE--EcCCCCEEEEEeCCCcEEEEECCCC-----cEEEEeccCCCCEEEEEECCCCCeEEEEeCCC
Q 016187 231 ---GHPYHTEGLTCLT--ISADSTLALSGSKDGSVHMVNITTG-----KVVSSLVSHTDSIECIGFSRSSPWAATGSMDQ 300 (394)
Q Consensus 231 ---~~~~~~~~i~~~~--~~~~~~~l~~g~~dg~i~i~d~~~~-----~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg 300 (394)
..-....++...+ -...+...++.....+|.+|..... +.++.+. -.+.+.++.|. +..++.|..+
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~- 157 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK- 157 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC-
Confidence 0001122344444 2233444444444558888876542 3444543 34778888888 4456666544
Q ss_pred cEEEEeCCCCCcceeccCC------------CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEE--EeecccCceeE
Q 016187 301 KLIIWDLQHSLPRSTCDHE------------DGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVR--TFSGHRDAIQA 366 (394)
Q Consensus 301 ~i~iwd~~~~~~~~~~~~~------------~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~--~~~~h~~~v~~ 366 (394)
...+.|+.+.......... .....+.-.+++.+|++. +. +-+|=-..|+..+ .+.-.. ....
T Consensus 158 ~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~-~g~fv~~~G~~~r~~~i~W~~-~p~~ 233 (275)
T PF00780_consen 158 GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DN-IGVFVNKNGEPSRKSTIQWSS-APQS 233 (275)
T ss_pred ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cc-eEEEEcCCCCcCcccEEEcCC-chhE
Confidence 4777888755433322111 111222233445666643 32 3333223454443 333322 4456
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 367 ISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 367 l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
+++. .+||+..+.++ |.||++.+-
T Consensus 234 ~~~~--~pyli~~~~~~-iEV~~~~~~ 257 (275)
T PF00780_consen 234 VAYS--SPYLIAFSSNS-IEVRSLETG 257 (275)
T ss_pred EEEE--CCEEEEECCCE-EEEEECcCC
Confidence 6664 47888777654 999998764
No 385
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.22 E-value=0.11 Score=44.51 Aligned_cols=234 Identities=17% Similarity=0.207 Sum_probs=125.7
Q ss_pred EEEEcCCCCcEEEEecCCCe-EEEEEcCCCeeeEeecCcccCE--EEEEEcCCCCEEEEEeCC-----CcEEEEeCCCC-
Q 016187 69 SVACSPTDATLVATGGGDDK-GFFWRINQGDWASEIQGHKDSV--SSLAFSMDGQLLASGGLD-----GLVQIWDPSSG- 139 (394)
Q Consensus 69 ~~~~~p~~~~~lasg~~d~~-v~~w~~~~~~~~~~~~~h~~~V--~~v~~s~~g~~l~t~s~d-----~~i~vwd~~~~- 139 (394)
.++++|.-++-++-+-.=|+ ..++|.+..+.+.++..-++.= --=.|||||.+|...-.| |.|=|||...+
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 46778876666665555555 3578887766554442211100 002499999999866544 67889998744
Q ss_pred ceEEEEecCCCCEEEEEEcCCCCEEEEecC------C------------CeEEEEeCCccceee--eec--ccCcCeEEE
Q 016187 140 NLKCTLEGPGGGVEWVSWHPRGHIVLAGSE------D------------STVWMWNADRAAYLN--MFS--GHGSSVTCG 197 (394)
Q Consensus 140 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~------d------------~~i~iw~~~~~~~~~--~~~--~h~~~v~~~ 197 (394)
..+..+..+.-....+.|.++|..++.+.. | -++.+.+..++..+. .+. .+.-.+..+
T Consensus 152 qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHl 231 (366)
T COG3490 152 QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHL 231 (366)
T ss_pred ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeee
Confidence 233455666666677899999998776533 1 112223323333222 122 344567777
Q ss_pred EECCCCCeEEEEeCCCcEE-----EEcCCCCceEEEEcCCCC----cccCeEEEEEcCCCC-EEEEEeCCCcEEEEECCC
Q 016187 198 DFTPDGKTICTGSDDATLR-----VWNPKSGENIHVIRGHPY----HTEGLTCLTISADST-LALSGSKDGSVHMVNITT 267 (394)
Q Consensus 198 ~~~~~~~~l~s~~~dg~i~-----vwd~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~-~l~~g~~dg~i~i~d~~~ 267 (394)
+..+||..++.+-.-|.=. +=-...++.+..+...+. ....+-+++.+.+.. ..+++-..+...+||..+
T Consensus 232 d~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~t 311 (366)
T COG3490 232 DIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAAT 311 (366)
T ss_pred eeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCC
Confidence 7777776655553322110 000112222222211100 112355666665444 444555566788999999
Q ss_pred CcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEe
Q 016187 268 GKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWD 306 (394)
Q Consensus 268 ~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd 306 (394)
|.++....- ..+...-+...-++..+.+|.+.++.
T Consensus 312 G~vv~~a~l----~daaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 312 GAVVSEAAL----PDAAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred CcEEecccc----cccccceeccCceEEecCCceEEecc
Confidence 987754321 12222233333456667788888774
No 386
>PHA03098 kelch-like protein; Provisional
Probab=97.21 E-value=0.034 Score=54.22 Aligned_cols=185 Identities=11% Similarity=0.168 Sum_probs=90.0
Q ss_pred CcEEEEecCCC------eEEEEEcCCCeeeEe--ecCcccCEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCceEE
Q 016187 77 ATLVATGGGDD------KGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGLD-----GLVQIWDPSSGNLKC 143 (394)
Q Consensus 77 ~~~lasg~~d~------~v~~w~~~~~~~~~~--~~~h~~~V~~v~~s~~g~~l~t~s~d-----~~i~vwd~~~~~~~~ 143 (394)
+.+++.||.++ .+..||..+.++... +.........+. -++..++.||.+ ..+..||+.+.+...
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 372 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWRE 372 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence 45666676543 466788877776432 111112222222 356777777765 357788888776543
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEecCC------CeEEEEeCCccceeee--ecccCcCeEEEEECCCCCeEEEEeCCC--
Q 016187 144 TLEGPGGGVEWVSWHPRGHIVLAGSED------STVWMWNADRAAYLNM--FSGHGSSVTCGDFTPDGKTICTGSDDA-- 213 (394)
Q Consensus 144 ~~~~~~~~v~~~~~~~~~~~l~~~s~d------~~i~iw~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~~~dg-- 213 (394)
.-..+...........++++++.|+.+ ..+..||..+.+-... +....... + +...+++..+.|+.+.
T Consensus 373 ~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~-~~~~~~~iyv~GG~~~~~ 450 (534)
T PHA03098 373 EPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-C-AIYHDGKIYVIGGISYID 450 (534)
T ss_pred CCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-e-EEEECCEEEEECCccCCC
Confidence 211111111111122356667777632 4578888776432211 11111111 1 1223556666665432
Q ss_pred ------cEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCC
Q 016187 214 ------TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKD-----GSVHMVNITTG 268 (394)
Q Consensus 214 ------~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~d-----g~i~i~d~~~~ 268 (394)
.+.+||+.+++= ..+...+........+.+ ++++++.|+.+ ..+.++|+.+.
T Consensus 451 ~~~~~~~v~~yd~~~~~W-~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 451 NIKVYNIVESYNPVTNKW-TELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCcccceEEEecCCCCce-eeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 388899877542 222221111111122222 56777777654 35666776654
No 387
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.19 E-value=0.15 Score=45.25 Aligned_cols=162 Identities=14% Similarity=0.255 Sum_probs=84.1
Q ss_pred eeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEe
Q 016187 98 DWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN 177 (394)
Q Consensus 98 ~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~ 177 (394)
.+......-...+..+.-++||+++++++.-....-||.-.......-......|..+.|.|++.+.+.+ ..+.|+.=+
T Consensus 135 tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~ 213 (302)
T PF14870_consen 135 TWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSD 213 (302)
T ss_dssp SEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE
T ss_pred CeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEcc
Confidence 3444455556789999999999999888766666678865433333334456789999999998876654 778888776
Q ss_pred -CCccceeee----ecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEE
Q 016187 178 -ADRAAYLNM----FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLAL 252 (394)
Q Consensus 178 -~~~~~~~~~----~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 252 (394)
......-.. ...-.-.+..++|.++++..++|+. |.+ +.....|+..+..+........+..+.|.+..+-++
T Consensus 214 ~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~ 291 (302)
T PF14870_consen 214 DPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV 291 (302)
T ss_dssp -TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE
T ss_pred CCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE
Confidence 222211111 1112234788999988777776654 544 334456676665543222234466777765555555
Q ss_pred EEeCCCcEEEE
Q 016187 253 SGSKDGSVHMV 263 (394)
Q Consensus 253 ~g~~dg~i~i~ 263 (394)
.| .+|.|.-|
T Consensus 292 lG-~~G~ll~~ 301 (302)
T PF14870_consen 292 LG-QDGVLLRY 301 (302)
T ss_dssp E--STTEEEEE
T ss_pred EC-CCcEEEEe
Confidence 44 56766544
No 388
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.0025 Score=63.47 Aligned_cols=101 Identities=19% Similarity=0.305 Sum_probs=74.0
Q ss_pred EEEEecCCCeEEEEeCCccce-eeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEE
Q 016187 163 IVLAGSEDSTVWMWNADRAAY-LNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTC 241 (394)
Q Consensus 163 ~l~~~s~d~~i~iw~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~ 241 (394)
.++.|+..|.+...|....-. ...-..-.++|++++|+.+|+.++.|-.+|.|.+||+..++.++.+..+.....++..
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~ 180 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIF 180 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEE
Confidence 456666667776666554211 1111123578999999999999999999999999999998888887766555666777
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEC
Q 016187 242 LTISADSTLALSGSKDGSVHMVNI 265 (394)
Q Consensus 242 ~~~~~~~~~l~~g~~dg~i~i~d~ 265 (394)
+.+..++..++++...|. +|.+
T Consensus 181 v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 181 VGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEeCCCcEEEEccCCCc--eEEE
Confidence 777777888888888886 4543
No 389
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.03 E-value=0.15 Score=42.48 Aligned_cols=94 Identities=21% Similarity=0.307 Sum_probs=66.3
Q ss_pred EEEEECCCCCeE-EEEeCCCcEEEEc--CCCCc-----eEEEEcCC-CCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 016187 195 TCGDFTPDGKTI-CTGSDDATLRVWN--PKSGE-----NIHVIRGH-PYHTEGLTCLTISADSTLALSGSKDGSVHMVNI 265 (394)
Q Consensus 195 ~~~~~~~~~~~l-~s~~~dg~i~vwd--~~~~~-----~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~ 265 (394)
..++|+.+.+.+ +.-+.+-+|.-|| ..+|. .+..++.. ++.....-.+++..+|.+.++.-..++|..+|+
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp 240 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP 240 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence 457888776655 4556677887787 55553 23333321 111111223455678899999999999999999
Q ss_pred CCCcEEEEeccCCCCEEEEEECC
Q 016187 266 TTGKVVSSLVSHTDSIECIGFSR 288 (394)
Q Consensus 266 ~~~~~~~~~~~h~~~i~~v~~~~ 288 (394)
.+|+.+.++.-.+..|+|++|-.
T Consensus 241 ~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 241 TTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CCCcEEEEEEcCCCceEEEEecC
Confidence 99999999988899999999974
No 390
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.03 E-value=0.062 Score=52.45 Aligned_cols=185 Identities=17% Similarity=0.253 Sum_probs=97.2
Q ss_pred CcEEEEecCC------CeEEEEEcCCCeeeEeec--CcccCEEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCceEE
Q 016187 77 ATLVATGGGD------DKGFFWRINQGDWASEIQ--GHKDSVSSLAFSMDGQLLASGGLDG-----LVQIWDPSSGNLKC 143 (394)
Q Consensus 77 ~~~lasg~~d------~~v~~w~~~~~~~~~~~~--~h~~~V~~v~~s~~g~~l~t~s~d~-----~i~vwd~~~~~~~~ 143 (394)
+.+.+.||.| .++..||..+.++..... ......... .-+|.+.|+||.|| ++-.||..+.++..
T Consensus 333 ~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~--~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~ 410 (571)
T KOG4441|consen 333 GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVA--VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTP 410 (571)
T ss_pred CEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeE--EECCEEEEEeccccccccccEEEecCCCCcccc
Confidence 4678889988 356678888877765322 111111111 23678889999886 47778887766543
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEecCCC------eEEEEeCCccceee--eecccCcCeEEEEECCCCCeEEEEeCCC--
Q 016187 144 TLEGPGGGVEWVSWHPRGHIVLAGSEDS------TVWMWNADRAAYLN--MFSGHGSSVTCGDFTPDGKTICTGSDDA-- 213 (394)
Q Consensus 144 ~~~~~~~~v~~~~~~~~~~~l~~~s~d~------~i~iw~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~~~dg-- 213 (394)
.-.-....-..-.-.-++.+.++|+.++ ++..||..+.+-.. .+..-.... .++ .-++...+.|+.|+
T Consensus 411 va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a-~~~~~iYvvGG~~~~~ 488 (571)
T KOG4441|consen 411 VAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVA-VLNGKIYVVGGFDGTS 488 (571)
T ss_pred cCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccc-eEE-EECCEEEEECCccCCC
Confidence 2211111111111223577788888554 46678876654221 111111111 112 22566777888776
Q ss_pred ---cEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCC
Q 016187 214 ---TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG-----SVHMVNITTG 268 (394)
Q Consensus 214 ---~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg-----~i~i~d~~~~ 268 (394)
+|..||+.+.+-. .+.........+-.+ .-++.+.++|+.|| ++..||..+.
T Consensus 489 ~~~~VE~ydp~~~~W~-~v~~m~~~rs~~g~~--~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 489 ALSSVERYDPETNQWT-MVAPMTSPRSAVGVV--VLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ccceEEEEcCCCCcee-EcccCccccccccEE--EECCEEEEEecccCccccceeEEcCCCCC
Confidence 3777998876532 222221111112111 23567778888765 3444554443
No 391
>PHA02790 Kelch-like protein; Provisional
Probab=96.99 E-value=0.11 Score=49.95 Aligned_cols=183 Identities=13% Similarity=0.104 Sum_probs=89.5
Q ss_pred CCcEEEEecCCC-----eEEEEEcCCCeeeEe--ecCcccCEEEEEEcCCCCEEEEEeCC--CcEEEEeCCCCceEEEEe
Q 016187 76 DATLVATGGGDD-----KGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGLD--GLVQIWDPSSGNLKCTLE 146 (394)
Q Consensus 76 ~~~~lasg~~d~-----~v~~w~~~~~~~~~~--~~~h~~~V~~v~~s~~g~~l~t~s~d--~~i~vwd~~~~~~~~~~~ 146 (394)
+..+++.||.++ ++..||..+.++... +.........+ .-+|...+.||.+ .++..||..+.+....-.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 345667777543 466788877766542 22212122222 2467777777754 357888877665543211
Q ss_pred cCCCCEEEEEEcCCCCEEEEecCCC---eEEEEeCCccceeee--ecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCC
Q 016187 147 GPGGGVEWVSWHPRGHIVLAGSEDS---TVWMWNADRAAYLNM--FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPK 221 (394)
Q Consensus 147 ~~~~~v~~~~~~~~~~~l~~~s~d~---~i~iw~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 221 (394)
-+........-.-++++.+.|+.++ .+..||..+.+-... +....... ++ ..-+++..+.| |.+.+||+.
T Consensus 349 l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~-~~~~~~IYv~G---G~~e~ydp~ 423 (480)
T PHA02790 349 LLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CA-LVFGRRLFLVG---RNAEFYCES 423 (480)
T ss_pred CCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eE-EEECCEEEEEC---CceEEecCC
Confidence 1111111112233577777777553 466788765432211 11111111 11 12345555666 457789987
Q ss_pred CCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCC
Q 016187 222 SGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDG-----SVHMVNITTG 268 (394)
Q Consensus 222 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg-----~i~i~d~~~~ 268 (394)
+++ ...+...+........+ .-++++.+.|+.++ ++..||..++
T Consensus 424 ~~~-W~~~~~m~~~r~~~~~~--v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 424 SNT-WTLIDDPIYPRDNPELI--IVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CCc-EeEcCCCCCCccccEEE--EECCEEEEECCcCCCcccceEEEEECCCC
Confidence 654 22333222111122222 23567777777542 3445554443
No 392
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.88 E-value=0.24 Score=42.56 Aligned_cols=268 Identities=19% Similarity=0.247 Sum_probs=147.2
Q ss_pred cEEEEEEc-CCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCC-EEEEEeCCCc-EEEEeCCCCceE
Q 016187 66 EVYSVACS-PTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQ-LLASGGLDGL-VQIWDPSSGNLK 142 (394)
Q Consensus 66 ~v~~~~~~-p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~-~l~t~s~d~~-i~vwd~~~~~~~ 142 (394)
+|+.-+|. +++...+++-+.+|.+.. .....-++| .|+|+|.-. -++-+-.-|+ ..++|....+..
T Consensus 36 avfasaf~~~dgs~g~a~~~eaGk~v~------~~~lpaR~H-----gi~~~p~~~ravafARrPGtf~~vfD~~~~~~p 104 (366)
T COG3490 36 AVFASAFDARDGSFGAATLSEAGKIVF------ATALPARGH-----GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEP 104 (366)
T ss_pred chheeeeeccCCceeEEEEccCCceee------eeecccccC-----CeecCCCCcceEEEEecCCceEEEECCCCCcCc
Confidence 44444443 344455666665555421 111122445 477777653 3455555555 357888877765
Q ss_pred EEEecCCCC--EEEEEEcCCCCEEEEecCC-----CeEEEEeCCcc-ceeeeecccCcCeEEEEECCCCCeEEEEeC---
Q 016187 143 CTLEGPGGG--VEWVSWHPRGHIVLAGSED-----STVWMWNADRA-AYLNMFSGHGSSVTCGDFTPDGKTICTGSD--- 211 (394)
Q Consensus 143 ~~~~~~~~~--v~~~~~~~~~~~l~~~s~d-----~~i~iw~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~--- 211 (394)
.++....+. .-.=.|+|+|.+|.+.-.| |.|-+||...+ +.+..+..|.-....+.+.+||++++.+..
T Consensus 105 v~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIe 184 (366)
T COG3490 105 VTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIE 184 (366)
T ss_pred EEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCcee
Confidence 554322211 1123689999988775443 67889998743 456678888877788899999999887642
Q ss_pred ---------------CCcEEEEcCCCCceEEEEcCC-CCcccCeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCcE
Q 016187 212 ---------------DATLRVWNPKSGENIHVIRGH-PYHTEGLTCLTISADSTLALSGSKDG-----SVHMVNITTGKV 270 (394)
Q Consensus 212 ---------------dg~i~vwd~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~g~~dg-----~i~i~d~~~~~~ 270 (394)
.-++.+-|..+|+.+.+.... ..+.-.+..+.+.++|+.++.+-.-| -..+=-...++.
T Consensus 185 thpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~ 264 (366)
T COG3490 185 THPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEP 264 (366)
T ss_pred cccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCc
Confidence 113333343444433221111 12344688888999888777654322 111212233444
Q ss_pred EEEecc-------CCCCEEEEEECCCCCeEE-EEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCe
Q 016187 271 VSSLVS-------HTDSIECIGFSRSSPWAA-TGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGK 342 (394)
Q Consensus 271 ~~~~~~-------h~~~i~~v~~~~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~ 342 (394)
+.-+.. ....|-+|+.+.+..+++ |+-..+...+||..+........-.+ ...+ .+...-++..+.+|.
T Consensus 265 l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d-aaGv--a~~~~gf~vssg~G~ 341 (366)
T COG3490 265 LEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD-AAGV--AAAKGGFAVSSGQGR 341 (366)
T ss_pred CcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccc-cccc--eeccCceEEecCCce
Confidence 433322 124577788886665554 45556677899998765443221111 1111 122333445566788
Q ss_pred EEEEE
Q 016187 343 VRVWD 347 (394)
Q Consensus 343 i~iwd 347 (394)
+.++.
T Consensus 342 ~~~~s 346 (366)
T COG3490 342 IIFYS 346 (366)
T ss_pred EEecc
Confidence 88774
No 393
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.76 E-value=0.33 Score=42.21 Aligned_cols=148 Identities=20% Similarity=0.234 Sum_probs=87.8
Q ss_pred CEEEEEEcCCCCEEEEEe---CCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEe-CCccc--
Q 016187 109 SVSSLAFSMDGQLLASGG---LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWN-ADRAA-- 182 (394)
Q Consensus 109 ~V~~v~~s~~g~~l~t~s---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~-~~~~~-- 182 (394)
.+.+.++|++|+.+|... ....+.++... .....+. ....+..-+|.+++.+.+....+...+++. ...+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999776555 33445555433 2222221 233677789999988777777666666664 22222
Q ss_pred eee-eecccCcCeEEEEECCCCCeEEEEe---CCCcEEEEcCCCCce--EEEE----cCCCCcccCeEEEEEcCCCCEEE
Q 016187 183 YLN-MFSGHGSSVTCGDFTPDGKTICTGS---DDATLRVWNPKSGEN--IHVI----RGHPYHTEGLTCLTISADSTLAL 252 (394)
Q Consensus 183 ~~~-~~~~h~~~v~~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~--~~~~----~~~~~~~~~i~~~~~~~~~~~l~ 252 (394)
... ....-...|+.++++|||..+|... .++.|.+=-+..... ...+ .........++.+.|.+++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 111 1111122899999999999887655 346666654321110 0111 11111234688999999999888
Q ss_pred EEeCCCc
Q 016187 253 SGSKDGS 259 (394)
Q Consensus 253 ~g~~dg~ 259 (394)
.+...+.
T Consensus 182 ~~~~~~~ 188 (253)
T PF10647_consen 182 LGRSAGG 188 (253)
T ss_pred EeCCCCC
Confidence 7765443
No 394
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.59 E-value=0.62 Score=43.30 Aligned_cols=81 Identities=17% Similarity=0.178 Sum_probs=52.0
Q ss_pred CCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceec-cCCCC----EEEEEEeC--------------CCCEE-EEEe
Q 016187 279 DSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTC-DHEDG----VTCLMWLG--------------TSKYV-VTGC 338 (394)
Q Consensus 279 ~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~----v~~~~~~~--------------~~~~l-~sg~ 338 (394)
..+.++..+|++.+.|+...-|+|.|+|+......... +..+. +....-.. ...+| +-+-
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap 387 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP 387 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence 45778999999999999988899999999765433221 11111 00000000 01233 3455
Q ss_pred CCCeEEEEECCCCeEEEEeec
Q 016187 339 VDGKVRVWDSLSGDCVRTFSG 359 (394)
Q Consensus 339 ~dg~i~iwd~~~~~~~~~~~~ 359 (394)
.-|.|.||.+++|..+..++.
T Consensus 388 rRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 388 RRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred cCCeEEEEecCCCCEEEEEEe
Confidence 689999999999988877763
No 395
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.48 E-value=0.012 Score=35.83 Aligned_cols=33 Identities=24% Similarity=0.307 Sum_probs=29.1
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 016187 107 KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGN 140 (394)
Q Consensus 107 ~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~ 140 (394)
...|.+++|+|...+||.++.+|.|.++.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 356999999999999999999999999988 443
No 396
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.43 E-value=0.52 Score=40.59 Aligned_cols=192 Identities=17% Similarity=0.179 Sum_probs=115.9
Q ss_pred eEeecC-cccCEEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCceEEEEecCCC-CEEEEEEcCCCCEEEEecCCCeEEE
Q 016187 100 ASEIQG-HKDSVSSLAFSMDGQLLASGGLDG--LVQIWDPSSGNLKCTLEGPGG-GVEWVSWHPRGHIVLAGSEDSTVWM 175 (394)
Q Consensus 100 ~~~~~~-h~~~V~~v~~s~~g~~l~t~s~d~--~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~s~d~~i~i 175 (394)
+.+++. .......+.|..+|.++-+.+.-| .|+.+|+.+|+......-+.. --..++.. ++++..-.-.++...+
T Consensus 36 v~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~ 114 (264)
T PF05096_consen 36 VETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFV 114 (264)
T ss_dssp EEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEE
T ss_pred EEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEE
Confidence 444442 233456788878888888887666 789999999998765544332 11233333 2344455567899999
Q ss_pred EeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCC--CCcccCeEEEEEcCCCCEEEE
Q 016187 176 WNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGH--PYHTEGLTCLTISADSTLALS 253 (394)
Q Consensus 176 w~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~ 253 (394)
||..+.+.+..+.-. ..=..++ .+++.|+.......|..+|+.+.+....+... ......++-+-+- +|.+.+=
T Consensus 115 yd~~tl~~~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyAN 190 (264)
T PF05096_consen 115 YDPNTLKKIGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYAN 190 (264)
T ss_dssp EETTTTEEEEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEE
T ss_pred EccccceEEEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEE
Confidence 999988777766433 3334554 46777887777888999999887766555421 1112234555554 4555554
Q ss_pred EeCCCcEEEEECCCCcEEEEecc------------C---CCCEEEEEECCCCC-eEEEE
Q 016187 254 GSKDGSVHMVNITTGKVVSSLVS------------H---TDSIECIGFSRSSP-WAATG 296 (394)
Q Consensus 254 g~~dg~i~i~d~~~~~~~~~~~~------------h---~~~i~~v~~~~~~~-~l~s~ 296 (394)
-=....|...|..+|++...+.. + .+-.+.+|+.|... +++||
T Consensus 191 VW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 191 VWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp ETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred eCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 44567788899999998776521 1 24578999987755 45554
No 397
>PRK10115 protease 2; Provisional
Probab=96.43 E-value=1.2 Score=44.80 Aligned_cols=238 Identities=8% Similarity=0.027 Sum_probs=117.8
Q ss_pred cCEEEEEEcCCCCEEEEEeC-C----CcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCC------CeEEEE
Q 016187 108 DSVSSLAFSMDGQLLASGGL-D----GLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSED------STVWMW 176 (394)
Q Consensus 108 ~~V~~v~~s~~g~~l~t~s~-d----~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d------~~i~iw 176 (394)
-.+..+.+||||++|+-+.. + ..|++-|+.+|+.+....... . ..++|.++++.|+....+ ..++.+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~-~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV-E-PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc-c-eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 34677899999998875532 2 368888998886432211111 1 458999998866554332 367778
Q ss_pred eCCcc--ceeeeecccCcCeE-EEEECCCCCeEEEEeC---CCcEEEEcCC--CCceEEEEcCCCCcccCeEEEEEcCCC
Q 016187 177 NADRA--AYLNMFSGHGSSVT-CGDFTPDGKTICTGSD---DATLRVWNPK--SGENIHVIRGHPYHTEGLTCLTISADS 248 (394)
Q Consensus 177 ~~~~~--~~~~~~~~h~~~v~-~~~~~~~~~~l~s~~~---dg~i~vwd~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~ 248 (394)
++.+. +-...+........ ....+.++++++..+. ++.+.+++.. .+.....+.. . ......+. ...+
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~--~~~~~~~~-~~~~ 280 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPR-R--KDHEYSLD-HYQH 280 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEEC-C--CCCEEEEE-eCCC
Confidence 88776 32333333222232 3334447877654433 3568888842 3332222211 1 11112222 2233
Q ss_pred CEEEEEeC---CCcEEEEECCCCcEEEEeccC-C-CCEEEEEECCCCCeEEEEeCCCcEEEE--eCCCCCcceec-cCCC
Q 016187 249 TLALSGSK---DGSVHMVNITTGKVVSSLVSH-T-DSIECIGFSRSSPWAATGSMDQKLIIW--DLQHSLPRSTC-DHED 320 (394)
Q Consensus 249 ~~l~~g~~---dg~i~i~d~~~~~~~~~~~~h-~-~~i~~v~~~~~~~~l~s~s~dg~i~iw--d~~~~~~~~~~-~~~~ 320 (394)
.+++.... ...|...++........+..+ . ..|..+.+. ...++++...++.-+++ ++......... ....
T Consensus 281 ~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~ 359 (686)
T PRK10115 281 RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTREVIGIAFDDPA 359 (686)
T ss_pred EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCceEEecCCCCc
Confidence 33333322 223444455421222334445 2 367778777 33456666667765554 44322222111 1122
Q ss_pred CEEEEEEe--CCCC-EEEEEe---CCCeEEEEECCCCe
Q 016187 321 GVTCLMWL--GTSK-YVVTGC---VDGKVRVWDSLSGD 352 (394)
Q Consensus 321 ~v~~~~~~--~~~~-~l~sg~---~dg~i~iwd~~~~~ 352 (394)
.+..+.++ +++. ++++.+ .-+.++.+|..+++
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 360 YVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred eEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 23323333 3333 444333 24678888887664
No 398
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.31 E-value=0.057 Score=54.65 Aligned_cols=144 Identities=13% Similarity=-0.004 Sum_probs=89.3
Q ss_pred CEEEEEEcCCCCEEEE--EeCCCcEEEEeCCCCce--------EEE---EecCCCCEEEEEEcCCCC-EEEEecCCCeEE
Q 016187 109 SVSSLAFSMDGQLLAS--GGLDGLVQIWDPSSGNL--------KCT---LEGPGGGVEWVSWHPRGH-IVLAGSEDSTVW 174 (394)
Q Consensus 109 ~V~~v~~s~~g~~l~t--~s~d~~i~vwd~~~~~~--------~~~---~~~~~~~v~~~~~~~~~~-~l~~~s~d~~i~ 174 (394)
++..+...+|+...+. .+.+-.|..||+.+-.. ++. .........++.|+|.-. ..+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 4555666777765443 33445788899764321 111 111123345678888643 356677889888
Q ss_pred EEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcc-cCeEEEEEcCCCCEEEE
Q 016187 175 MWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHT-EGLTCLTISADSTLALS 253 (394)
Q Consensus 175 iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~ 253 (394)
+..+........-..-....+|++|+|.|+.++.|-..|++.-|.+. .+....+...+... ..|.+++|-....++++
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 88765433222222345677899999999999999999999999764 33333333333333 56888888766666554
No 399
>PHA03098 kelch-like protein; Provisional
Probab=96.27 E-value=0.46 Score=46.42 Aligned_cols=146 Identities=15% Similarity=0.112 Sum_probs=71.9
Q ss_pred CCCCEEEEEeCCC------cEEEEeCCCCceEEEEecC--CCCEEEEEEcCCCCEEEEecCC-----CeEEEEeCCccce
Q 016187 117 MDGQLLASGGLDG------LVQIWDPSSGNLKCTLEGP--GGGVEWVSWHPRGHIVLAGSED-----STVWMWNADRAAY 183 (394)
Q Consensus 117 ~~g~~l~t~s~d~------~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~s~d-----~~i~iw~~~~~~~ 183 (394)
.++..++.||.++ .+..||..+.+....-..+ ......+ .-++.+++.|+.+ ..+..||..+.+-
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 3455666776542 5778888877664321111 1111122 2356677777765 3467788765432
Q ss_pred eee--ecccCcCeEEEEECCCCCeEEEEeCC------CcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEe
Q 016187 184 LNM--FSGHGSSVTCGDFTPDGKTICTGSDD------ATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS 255 (394)
Q Consensus 184 ~~~--~~~h~~~v~~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~ 255 (394)
... +....... +++ .-+++..+.|+.+ ..+..||+.+++ ...+...+....... +...++.+++.|+
T Consensus 371 ~~~~~lp~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~p~~r~~~~--~~~~~~~iyv~GG 445 (534)
T PHA03098 371 REEPPLIFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNK-WSKGSPLPISHYGGC--AIYHDGKIYVIGG 445 (534)
T ss_pred eeCCCcCcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCe-eeecCCCCccccCce--EEEECCEEEEECC
Confidence 211 11111111 111 2356666677632 357889987653 222222121111111 2223566777776
Q ss_pred CCC--------cEEEEECCCCc
Q 016187 256 KDG--------SVHMVNITTGK 269 (394)
Q Consensus 256 ~dg--------~i~i~d~~~~~ 269 (394)
.+. .+.+||..+++
T Consensus 446 ~~~~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 446 ISYIDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred ccCCCCCcccceEEEecCCCCc
Confidence 432 37888887764
No 400
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.25 E-value=0.018 Score=35.14 Aligned_cols=34 Identities=26% Similarity=0.491 Sum_probs=29.4
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeE
Q 016187 319 EDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDC 353 (394)
Q Consensus 319 ~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~ 353 (394)
...|.++.|+|...+||.|+.+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 356899999999999999999999999987 4443
No 401
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.19 E-value=1.7 Score=44.07 Aligned_cols=111 Identities=17% Similarity=0.233 Sum_probs=69.6
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceEEEEecCCC--------CEEEEEEcC----------------CCCEEEEecCCCeEE
Q 016187 119 GQLLASGGLDGLVQIWDPSSGNLKCTLEGPGG--------GVEWVSWHP----------------RGHIVLAGSEDSTVW 174 (394)
Q Consensus 119 g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~--------~v~~~~~~~----------------~~~~l~~~s~d~~i~ 174 (394)
+..|+.++.++.|.-.|..+|+.+-.+..... ..+.+++.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 55777788888999999999988766542211 112233321 234778888999999
Q ss_pred EEeCCccceeeeecccCcCeE-------------EEEECC--CCCeEEEEeC----------CCcEEEEcCCCCceEEEE
Q 016187 175 MWNADRAAYLNMFSGHGSSVT-------------CGDFTP--DGKTICTGSD----------DATLRVWNPKSGENIHVI 229 (394)
Q Consensus 175 iw~~~~~~~~~~~~~h~~~v~-------------~~~~~~--~~~~l~s~~~----------dg~i~vwd~~~~~~~~~~ 229 (394)
-.|.++++..-.+.. .+.+. ...-.| .+..++.|+. +|.|+-+|.++|+.+-.+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999998887654421 11110 011112 2345666643 688999999999987655
Q ss_pred c
Q 016187 230 R 230 (394)
Q Consensus 230 ~ 230 (394)
.
T Consensus 353 ~ 353 (764)
T TIGR03074 353 D 353 (764)
T ss_pred e
Confidence 4
No 402
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.04 E-value=1.2 Score=41.13 Aligned_cols=192 Identities=16% Similarity=0.180 Sum_probs=88.0
Q ss_pred CCCeEEEEe-CCCcEEEEcCCCC----ceEEEEcCCCCcc----cCeEEEEEcCCCCEEEEEe--C----CCcEEEEECC
Q 016187 202 DGKTICTGS-DDATLRVWNPKSG----ENIHVIRGHPYHT----EGLTCLTISADSTLALSGS--K----DGSVHMVNIT 266 (394)
Q Consensus 202 ~~~~l~s~~-~dg~i~vwd~~~~----~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~g~--~----dg~i~i~d~~ 266 (394)
+.++|+..+ ..+.|.|.|+.+. +..+.++....+. .....+-.-|+|.+++++- . -|.+.++|-.
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 345666555 6778999998743 2233333211111 1122344557887777742 2 2467788877
Q ss_pred CCcEEEEeccC---CCCEEEEEECCCCCeEEEEeC--------------------CCcEEEEeCCCCCcceeccCCC---
Q 016187 267 TGKVVSSLVSH---TDSIECIGFSRSSPWAATGSM--------------------DQKLIIWDLQHSLPRSTCDHED--- 320 (394)
Q Consensus 267 ~~~~~~~~~~h---~~~i~~v~~~~~~~~l~s~s~--------------------dg~i~iwd~~~~~~~~~~~~~~--- 320 (394)
+..+....... ...-..+.+.|....++|... ..++.+||+.+...........
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 76666554432 223456778888888887652 4589999998876665554332
Q ss_pred CEEEEEEe--CCCCEEEEEe-CCCeEEEEEC-CCCe----EEEEeec-----------------ccCceeEEEEccCCCE
Q 016187 321 GVTCLMWL--GTSKYVVTGC-VDGKVRVWDS-LSGD----CVRTFSG-----------------HRDAIQAISVSAHQDF 375 (394)
Q Consensus 321 ~v~~~~~~--~~~~~l~sg~-~dg~i~iwd~-~~~~----~~~~~~~-----------------h~~~v~~l~~~~~~~~ 375 (394)
.+..+.|. |+..+-++|+ -.++|..|-- ..++ .+-.+.. -..-|+.+.+|.|.++
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 24456665 4455544443 3444555432 3332 1112211 0244799999999998
Q ss_pred EEEEe-CCCcEEEEeccCC
Q 016187 376 LVSVS-LDGTARVFEIADF 393 (394)
Q Consensus 376 l~s~s-~dg~i~iw~~~~~ 393 (394)
|.... ..|.||.||+.+.
T Consensus 326 LYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp EEEEETTTTEEEEEE-SST
T ss_pred EEEEcccCCcEEEEecCCC
Confidence 87554 6899999999874
No 403
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.00 E-value=0.78 Score=38.43 Aligned_cols=133 Identities=12% Similarity=0.034 Sum_probs=76.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccC--------CCCEEEEEECCCCCeE-EEEeCCCcEEEEe--C
Q 016187 239 LTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSH--------TDSIECIGFSRSSPWA-ATGSMDQKLIIWD--L 307 (394)
Q Consensus 239 i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h--------~~~i~~v~~~~~~~~l-~s~s~dg~i~iwd--~ 307 (394)
.+--..+|+|++++--..|-.- .+....+.+..-+.+| -.--+.++|+.+.+.+ ++-+.+-+|.-|| .
T Consensus 111 ~NDgkvdP~Gryy~GtMad~~~-~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~ 189 (310)
T KOG4499|consen 111 LNDGKVDPDGRYYGGTMADFGD-DLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDC 189 (310)
T ss_pred cccCccCCCCceeeeeeccccc-cccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCC
Confidence 4445678999985433332111 2222222222222222 2234567787766544 4455666777777 3
Q ss_pred CCCCcc---eec--c----CC-CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeecccCceeEEEEccC
Q 016187 308 QHSLPR---STC--D----HE-DGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSGHRDAIQAISVSAH 372 (394)
Q Consensus 308 ~~~~~~---~~~--~----~~-~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~ 372 (394)
.+.... ... . .+ ...-.++...+|.+.++.-..|+|.-.|..+|+.+.+++--...|++.+|...
T Consensus 190 ~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 190 PTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred CcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 322110 000 0 00 01122334557777777788899999999999999999988889999999743
No 404
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.71 E-value=0.0056 Score=59.99 Aligned_cols=198 Identities=20% Similarity=0.337 Sum_probs=109.3
Q ss_pred ecCcccCEEEEEEcCC-CCEEEEEeCCCcEEEEeCC--CCceEEEEe----cC-CC---CEEEEEEcCCCCEEEEecCCC
Q 016187 103 IQGHKDSVSSLAFSMD-GQLLASGGLDGLVQIWDPS--SGNLKCTLE----GP-GG---GVEWVSWHPRGHIVLAGSEDS 171 (394)
Q Consensus 103 ~~~h~~~V~~v~~s~~-g~~l~t~s~d~~i~vwd~~--~~~~~~~~~----~~-~~---~v~~~~~~~~~~~l~~~s~d~ 171 (394)
++|..+.|-.++|..- -..++ -.-|.+.||++. .|+....+. .+ .. .|.+.-|-++.-++..+-.++
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~ 205 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG 205 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence 4566777878888431 11221 223678889864 455433321 11 22 334444445666777777888
Q ss_pred eEEEEeCCccceeeeecccCcCeEEE-----------EECCCCCeEEEEeCCCcEEEEcCC-----CCceEEEEcCCCCc
Q 016187 172 TVWMWNADRAAYLNMFSGHGSSVTCG-----------DFTPDGKTICTGSDDATLRVWNPK-----SGENIHVIRGHPYH 235 (394)
Q Consensus 172 ~i~iw~~~~~~~~~~~~~h~~~v~~~-----------~~~~~~~~l~s~~~dg~i~vwd~~-----~~~~~~~~~~~~~~ 235 (394)
++++...++... ..+.+|+..++.+ .++|||+.|+.++.||.++.|.+- ...+++..+.|..|
T Consensus 206 ~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~ 284 (1283)
T KOG1916|consen 206 EIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKH 284 (1283)
T ss_pred ceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCC
Confidence 888877665432 4445576554432 368999999999999999999753 22334444443322
Q ss_pred ccCeEEEEEcCCC---------CEEEEE-eCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCC--------e----E
Q 016187 236 TEGLTCLTISADS---------TLALSG-SKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSP--------W----A 293 (394)
Q Consensus 236 ~~~i~~~~~~~~~---------~~l~~g-~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~--------~----l 293 (394)
. .+..+ +.... .+++++ ..+..+++|.....+++ +..-.+.|..|+ -+++. | +
T Consensus 285 p-~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl--l~~~~d~v~iV~-p~~~~v~~~~~~~~~~~~~ 359 (1283)
T KOG1916|consen 285 P-RVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL--LDKLIDGVQIVG-PHDGEVTDLSMCQWMTTRL 359 (1283)
T ss_pred C-ceeee-eccccccCCccceeEEEEecccCCcceeEeeccchhhh--hhhcccceEeec-CCCccccchhhhHHHHHHH
Confidence 1 12222 33221 133443 34567888987766665 222223444444 33222 1 3
Q ss_pred EEEeCCCcEEEEeCC
Q 016187 294 ATGSMDQKLIIWDLQ 308 (394)
Q Consensus 294 ~s~s~dg~i~iwd~~ 308 (394)
++.+.+++|++|--+
T Consensus 360 v~r~v~~~i~~~qn~ 374 (1283)
T KOG1916|consen 360 VSRSVDGTIKIWQNR 374 (1283)
T ss_pred HHhhhHHHHHHhhcc
Confidence 445667888888543
No 405
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.69 E-value=1.4 Score=39.14 Aligned_cols=269 Identities=13% Similarity=0.094 Sum_probs=120.0
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CceEEE--EecC---CCCEEEEEEcCCCCEEEEecCCCeEEEEeCC
Q 016187 106 HKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS-GNLKCT--LEGP---GGGVEWVSWHPRGHIVLAGSEDSTVWMWNAD 179 (394)
Q Consensus 106 h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~-~~~~~~--~~~~---~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~ 179 (394)
-..++..|.|..+..-+++|. .+.| +.... |+.=.. .... .-....+.|..+ ..+++| ..+. .+...+
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~-~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~ivG-~~g~-ll~T~D 88 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGA-YGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIVG-EPGL-LLHTTD 88 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEET-TTEE--EEESSTTSS-EE-----S-----EEEEEEEETT-EEEEEE-ETTE-EEEESS
T ss_pred CCCceEEEEEecCCEEEEEec-CCEE--EEECCCCccccccccCCCccceeeEEEEEecCC-ceEEEc-CCce-EEEecC
Confidence 345789999985555566554 4543 33333 321111 1111 123566777543 334443 4443 333333
Q ss_pred ccceeeeec---ccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeC
Q 016187 180 RAAYLNMFS---GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSK 256 (394)
Q Consensus 180 ~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~ 256 (394)
.++.-..+. .-......+....++..++ ++..|.|..= ...|+....+... ....+..+..+++|+++++++.
T Consensus 89 gG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy~T-~DgG~tW~~~~~~--~~gs~~~~~r~~dG~~vavs~~ 164 (302)
T PF14870_consen 89 GGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAIYRT-TDGGKTWQAVVSE--TSGSINDITRSSDGRYVAVSSR 164 (302)
T ss_dssp TTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--EEEE-SSTTSSEEEEE-S------EEEEEE-TTS-EEEEETT
T ss_pred CCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEEEe-CCCCCCeeEcccC--CcceeEeEEECCCCcEEEEECc
Confidence 333211111 1112222333333333333 3344543221 2234444443221 2356788888999999999877
Q ss_pred CCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCC-----Ccceec-cCCCCEEEEEEeCC
Q 016187 257 DGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHS-----LPRSTC-DHEDGVTCLMWLGT 330 (394)
Q Consensus 257 dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~-----~~~~~~-~~~~~v~~~~~~~~ 330 (394)
...+.-|+.-...-...-..-...|..|.|.|++.+.+.+ ..|.|++=+.... ...... .....+..++|.++
T Consensus 165 G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~ 243 (302)
T PF14870_consen 165 GNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPP 243 (302)
T ss_dssp SSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSS
T ss_pred ccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCC
Confidence 7777788864322121222245789999999998765544 7888887662111 000111 12234788999988
Q ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEee---cccCceeEEEEccCCCEEEEEeCCCcEEEE
Q 016187 331 SKYVVTGCVDGKVRVWDSLSGDCVRTFS---GHRDAIQAISVSAHQDFLVSVSLDGTARVF 388 (394)
Q Consensus 331 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw 388 (394)
....++|+ .|.+.+ ....|+.-+.-. .-..-...+.|.++.+- ...+.+|.+.-|
T Consensus 244 ~~~wa~gg-~G~l~~-S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~g-f~lG~~G~ll~~ 301 (302)
T PF14870_consen 244 NEIWAVGG-SGTLLV-STDGGKTWQKDRVGENVPSNLYRIVFVNPDKG-FVLGQDGVLLRY 301 (302)
T ss_dssp S-EEEEES-TT-EEE-ESSTTSS-EE-GGGTTSSS---EEEEEETTEE-EEE-STTEEEEE
T ss_pred CCEEEEeC-CccEEE-eCCCCccceECccccCCCCceEEEEEcCCCce-EEECCCcEEEEe
Confidence 77777665 443333 334444433332 23445778888765444 446778877655
No 406
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.43 E-value=0.64 Score=45.44 Aligned_cols=108 Identities=19% Similarity=0.192 Sum_probs=71.5
Q ss_pred CEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceec--cCCCCEEEEEEe--CCCCEEEEEeCCCeEEEEEC-------
Q 016187 280 SIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTC--DHEDGVTCLMWL--GTSKYVVTGCVDGKVRVWDS------- 348 (394)
Q Consensus 280 ~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~~--~~~~~l~sg~~dg~i~iwd~------- 348 (394)
.+.-+.-+.-++..+..+...++.|||.+........ ...+.|..+.|. |+++.+++-+....|.++.-
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 3444444555555555555667999999876543332 346789999986 78899999999999999842
Q ss_pred --CCCeEEEEe--eccc-CceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 349 --LSGDCVRTF--SGHR-DAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 349 --~~~~~~~~~--~~h~-~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
.+...++.+ ..|+ .+|.+..|.++|..++.+|. .+.|++
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN--qlfv~d 154 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN--QLFVFD 154 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC--EEEEEC
Confidence 123344443 3444 57899999999987765543 355554
No 407
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.42 E-value=3.5 Score=41.86 Aligned_cols=276 Identities=14% Similarity=0.165 Sum_probs=139.2
Q ss_pred ccCEEEEEEcCCC------CEEEEEeCCCcEEEEe-CCCCceEEEEec----CCCCEEEEEEcCCCCEEEEecCCCeEEE
Q 016187 107 KDSVSSLAFSMDG------QLLASGGLDGLVQIWD-PSSGNLKCTLEG----PGGGVEWVSWHPRGHIVLAGSEDSTVWM 175 (394)
Q Consensus 107 ~~~V~~v~~s~~g------~~l~t~s~d~~i~vwd-~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~s~d~~i~i 175 (394)
...|.|+.++|-| ++++.|..+..+.+-- .......+.... -...|-...+-.+.++|+++..||.+..
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~ 609 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY 609 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence 4679999999753 2688888777666543 233333322211 1234555566667889999999999987
Q ss_pred EeCC--cccee--eeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEE-EcCCCCcccCeEEE-EEc-CCC
Q 016187 176 WNAD--RAAYL--NMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHV-IRGHPYHTEGLTCL-TIS-ADS 248 (394)
Q Consensus 176 w~~~--~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~i~~~-~~~-~~~ 248 (394)
+.+. ++..- +...-...++.--.|+..++.-+-+..|+-.-+|--+ ++.... +. -..+..+ .++ +..
T Consensus 610 fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-~kLv~spls-----~kev~~~c~f~s~a~ 683 (1096)
T KOG1897|consen 610 FVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN-GKLVYSPLS-----LKEVNHMCPFNSDAY 683 (1096)
T ss_pred EEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC-CcEEEeccc-----hHHhhhhcccccccC
Confidence 7654 33221 1111223455545676655554445556655566433 222111 10 0001111 111 111
Q ss_pred -CEEEEEeCCCcEEEEECCCCc--EEEEeccCCCCEEEEEECCCCCeEEEEeCC--------------CcEEEEeCCCCC
Q 016187 249 -TLALSGSKDGSVHMVNITTGK--VVSSLVSHTDSIECIGFSRSSPWAATGSMD--------------QKLIIWDLQHSL 311 (394)
Q Consensus 249 -~~l~~g~~dg~i~i~d~~~~~--~~~~~~~h~~~i~~v~~~~~~~~l~s~s~d--------------g~i~iwd~~~~~ 311 (394)
..++++ ..+.+++.-+..-+ .++++. -......+++.+....+++.+.- ..++++|-.+..
T Consensus 684 ~d~l~~~-~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~ 761 (1096)
T KOG1897|consen 684 PDSLASA-NGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFE 761 (1096)
T ss_pred CceEEEe-cCCceEEEEecchhhcceeeec-CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCcee
Confidence 223333 34556665544322 223332 23445556666644444443321 125555544332
Q ss_pred cceec--cCCC---CEEEEEEeCC-CCEEEEEe----------CCCeEEEEECCCCeEEEEeecc--cCceeEEEEccCC
Q 016187 312 PRSTC--DHED---GVTCLMWLGT-SKYVVTGC----------VDGKVRVWDSLSGDCVRTFSGH--RDAIQAISVSAHQ 373 (394)
Q Consensus 312 ~~~~~--~~~~---~v~~~~~~~~-~~~l~sg~----------~dg~i~iwd~~~~~~~~~~~~h--~~~v~~l~~~~~~ 373 (394)
..... .... .+.++.|..+ +.+++.|. ..|+|.+|....++.++....+ .+.+.++.. .+|
T Consensus 762 vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fng 840 (1096)
T KOG1897|consen 762 VLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNG 840 (1096)
T ss_pred EEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCC
Confidence 21111 1111 2344457666 67777775 2578888876664444443322 345555532 466
Q ss_pred CEEEEEeCCCcEEEEeccCC
Q 016187 374 DFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 374 ~~l~s~s~dg~i~iw~~~~~ 393 (394)
+++ ++....||+|++..-
T Consensus 841 kll--A~In~~vrLye~t~~ 858 (1096)
T KOG1897|consen 841 KLL--AGINQSVRLYEWTTE 858 (1096)
T ss_pred eEE--EecCcEEEEEEcccc
Confidence 776 466778999987653
No 408
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.35 E-value=1.8 Score=37.98 Aligned_cols=217 Identities=14% Similarity=0.179 Sum_probs=120.3
Q ss_pred EEEEEEcCCCCEEEEecCCCeEEEEeCC-------ccceeeeecc-----cCcCeEEEEECCCCC------------eEE
Q 016187 152 VEWVSWHPRGHIVLAGSEDSTVWMWNAD-------RAAYLNMFSG-----HGSSVTCGDFTPDGK------------TIC 207 (394)
Q Consensus 152 v~~~~~~~~~~~l~~~s~d~~i~iw~~~-------~~~~~~~~~~-----h~~~v~~~~~~~~~~------------~l~ 207 (394)
-+.++++|.+.+.++....+...+||.. ..+++..+.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 3568999999888888888999999986 1122233331 123566666664322 367
Q ss_pred EEeCCCcEEEEcCCCCce-----EEEEcCCCCcccCe-EEEEEcC--CCCE-EEEEeCCCcEEEEECCCCcEEEEeccCC
Q 016187 208 TGSDDATLRVWNPKSGEN-----IHVIRGHPYHTEGL-TCLTISA--DSTL-ALSGSKDGSVHMVNITTGKVVSSLVSHT 278 (394)
Q Consensus 208 s~~~dg~i~vwd~~~~~~-----~~~~~~~~~~~~~i-~~~~~~~--~~~~-l~~g~~dg~i~i~d~~~~~~~~~~~~h~ 278 (394)
.++.||+|.-|....+.. ...+... ....+ ..+++.. .+.+ .++--..++|.++|-.-.++. .-....
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s--~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~-~~g~F~ 181 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDAS--QQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPP-LPGSFI 181 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccC--CCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccccc-CCCCcc
Confidence 788999999998644332 1112111 01112 2344443 2344 444457889999985433221 000011
Q ss_pred CC----------EEEE---------EECCCCCeEEEEeCCCcEEEEeCCCCCcceec--cCCCCEEEEEEeC------CC
Q 016187 279 DS----------IECI---------GFSRSSPWAATGSMDQKLIIWDLQHSLPRSTC--DHEDGVTCLMWLG------TS 331 (394)
Q Consensus 279 ~~----------i~~v---------~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~------~~ 331 (394)
++ |..+ .-.++...=+.+.--|.|-+||+.....+... +.-...+.++..| .+
T Consensus 182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg 261 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSG 261 (336)
T ss_pred CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCC
Confidence 11 1110 01111111122233467888888766544331 2223344555543 35
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEeeccc------CceeEEEEcc
Q 016187 332 KYVVTGCVDGKVRVWDSLSGDCVRTFSGHR------DAIQAISVSA 371 (394)
Q Consensus 332 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~h~------~~v~~l~~~~ 371 (394)
.+|+-=-.||+|..||..+++.+..+..-. ..++.|+|..
T Consensus 262 ~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 262 ALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 566665679999999999999888876432 3478999975
No 409
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.22 E-value=0.89 Score=41.89 Aligned_cols=140 Identities=15% Similarity=0.196 Sum_probs=84.5
Q ss_pred EEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEee-cCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceE----
Q 016187 68 YSVACSPTDATLVATGGGDDKGFFWRINQGDWASEI-QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK---- 142 (394)
Q Consensus 68 ~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~-~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~---- 142 (394)
+.+-|...+..++|+.++.-+-.+-.....+..-.+ ...+++|.++.||+|.+.||.--.+.+|.+.+....+..
T Consensus 26 ngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~ 105 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT 105 (657)
T ss_pred cceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Confidence 444555555667777654333322222222322222 234669999999999999999999999999987433221
Q ss_pred EEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCc-cceeeeecccCcCeEEEEECCCCCeEEEE
Q 016187 143 CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADR-AAYLNMFSGHGSSVTCGDFTPDGKTICTG 209 (394)
Q Consensus 143 ~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 209 (394)
.+.+.....|....|..+.. ++..+. ..+.+|.... ...++..+.|...|....|.++.+.++.+
T Consensus 106 ~~ck~k~~~IlGF~W~~s~e-~A~i~~-~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 106 QECKTKNANILGFCWTSSTE-IAFITD-QGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred HHhccCcceeEEEEEecCee-EEEEec-CCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeee
Confidence 22233445677888887633 333333 3355554432 23355566788888888899887765433
No 410
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.22 E-value=2.3 Score=38.59 Aligned_cols=70 Identities=14% Similarity=0.183 Sum_probs=44.2
Q ss_pred cCCCCEEEEEEeC-------CCCEEEEEeCCCeEEEEECCCCeEEE---E-eecccCceeEEEEccCCCEEEEEeCCCcE
Q 016187 317 DHEDGVTCLMWLG-------TSKYVVTGCVDGKVRVWDSLSGDCVR---T-FSGHRDAIQAISVSAHQDFLVSVSLDGTA 385 (394)
Q Consensus 317 ~~~~~v~~~~~~~-------~~~~l~sg~~dg~i~iwd~~~~~~~~---~-~~~h~~~v~~l~~~~~~~~l~s~s~dg~i 385 (394)
.+...+..+.|.. .+.++++.-..+.|....+.+...+. . +......+..|++.|||.++++-..+|.|
T Consensus 250 ~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~i 329 (331)
T PF07995_consen 250 PPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKI 329 (331)
T ss_dssp TTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTE
T ss_pred cCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeE
Confidence 3445566666653 34466666556788888776553332 2 23455589999999999999988888876
Q ss_pred E
Q 016187 386 R 386 (394)
Q Consensus 386 ~ 386 (394)
.
T Consensus 330 y 330 (331)
T PF07995_consen 330 Y 330 (331)
T ss_dssp E
T ss_pred e
Confidence 4
No 411
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.20 E-value=2.3 Score=39.23 Aligned_cols=141 Identities=16% Similarity=0.261 Sum_probs=73.9
Q ss_pred CEEEEEEcCCCCEEEEEe-----------CCC-cEEEEeCCC--Cce--EEEEecCCCCEEEEEEcCCCCEEEEecCCCe
Q 016187 109 SVSSLAFSMDGQLLASGG-----------LDG-LVQIWDPSS--GNL--KCTLEGPGGGVEWVSWHPRGHIVLAGSEDST 172 (394)
Q Consensus 109 ~V~~v~~s~~g~~l~t~s-----------~d~-~i~vwd~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~ 172 (394)
....|+|.++|+++++-. ..+ .|.+++-.+ |+. ...+...-.....+++.+++ +++ ++....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeE
Confidence 456789999998877643 223 677776443 332 22333333345778898888 444 444433
Q ss_pred EEEEeCCcc-----c---eeeeecc----cCcCeEEEEECCCCCeEEEEeCC-------------------CcEEEEcCC
Q 016187 173 VWMWNADRA-----A---YLNMFSG----HGSSVTCGDFTPDGKTICTGSDD-------------------ATLRVWNPK 221 (394)
Q Consensus 173 i~iw~~~~~-----~---~~~~~~~----h~~~v~~~~~~~~~~~l~s~~~d-------------------g~i~vwd~~ 221 (394)
.++.+.... + .+..+.. +......++|.|||.+.++-+.. |.|.-+++.
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 333344211 1 1122222 12335678999999876654421 334444444
Q ss_pred CCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEe
Q 016187 222 SGENIHVIRGHPYHTEGLTCLTISADSTLALSGS 255 (394)
Q Consensus 222 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~ 255 (394)
+++ +..+.. .......++|++++.++++-.
T Consensus 173 g~~-~e~~a~---G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 173 GGK-LRVVAH---GFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCe-EEEEec---CcCCCccceECCCCCEEEEcc
Confidence 332 222211 112245678888888776544
No 412
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.15 E-value=1.8 Score=39.94 Aligned_cols=142 Identities=11% Similarity=0.115 Sum_probs=79.1
Q ss_pred CeEEEEEcCCCCEEEEEe-----------CCC-cEEEEECCC--CcE--EEEeccCCCCEEEEEECCCCCeEEEEeCCCc
Q 016187 238 GLTCLTISADSTLALSGS-----------KDG-SVHMVNITT--GKV--VSSLVSHTDSIECIGFSRSSPWAATGSMDQK 301 (394)
Q Consensus 238 ~i~~~~~~~~~~~l~~g~-----------~dg-~i~i~d~~~--~~~--~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~ 301 (394)
....+++.++|+++++-. ..+ .|.+++-.. |+. ...+...-.....+++.+++ +++ ++....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeE
Confidence 456788999999877753 223 677776543 332 22332233456788898888 444 344433
Q ss_pred EEEEeCCCC-----Cccee---cc-----CCCCEEEEEEeCCCCEEEEEeC-------------------CCeEEEEECC
Q 016187 302 LIIWDLQHS-----LPRST---CD-----HEDGVTCLMWLGTSKYVVTGCV-------------------DGKVRVWDSL 349 (394)
Q Consensus 302 i~iwd~~~~-----~~~~~---~~-----~~~~v~~~~~~~~~~~l~sg~~-------------------dg~i~iwd~~ 349 (394)
.++.|.... ..... .. +......+.|.|++.+.++-+. .|.|.-++..
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 334344221 11111 11 1234677899999876554331 1456666665
Q ss_pred CCeEEEEeecccCceeEEEEccCCCEEEEEeCC
Q 016187 350 SGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLD 382 (394)
Q Consensus 350 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~d 382 (394)
+++....-.++.. .+.++|+++++++++-..+
T Consensus 173 g~~~e~~a~G~rn-p~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 173 GGKLRVVAHGFQN-PYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CCeEEEEecCcCC-CccceECCCCCEEEEccCC
Confidence 5544322245443 4689999999988765433
No 413
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.87 E-value=0.63 Score=47.62 Aligned_cols=142 Identities=13% Similarity=0.111 Sum_probs=89.3
Q ss_pred CeEEEEEcCCCCEEEEE--eCCCcEEEEECCCCcE-----EEEeccC------CCCEEEEEECCCCCe-EEEEeCCCcEE
Q 016187 238 GLTCLTISADSTLALSG--SKDGSVHMVNITTGKV-----VSSLVSH------TDSIECIGFSRSSPW-AATGSMDQKLI 303 (394)
Q Consensus 238 ~i~~~~~~~~~~~l~~g--~~dg~i~i~d~~~~~~-----~~~~~~h------~~~i~~v~~~~~~~~-l~s~s~dg~i~ 303 (394)
.+..+...+|++..++. +.+-.|..||+++-.. ..-+..| .....++.|.|.-+. .|....|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 35556667776655443 3444788999875321 1111112 223456778877553 55667788888
Q ss_pred EEeCCCCCcc-eeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeec----ccCceeEEEEccCCCEEEE
Q 016187 304 IWDLQHSLPR-STCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFSG----HRDAIQAISVSAHQDFLVS 378 (394)
Q Consensus 304 iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~----h~~~v~~l~~~~~~~~l~s 378 (394)
+..+...... .........+|++|+|.|+.++.|-..|++.-|-- +.+..+++.+ ....|.+|.|-....+++.
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 8766432221 12244567899999999999999999999999853 3444444332 2477999999776666665
Q ss_pred Ee
Q 016187 379 VS 380 (394)
Q Consensus 379 ~s 380 (394)
-+
T Consensus 261 y~ 262 (1405)
T KOG3630|consen 261 YG 262 (1405)
T ss_pred ec
Confidence 43
No 414
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.86 E-value=1.6 Score=40.94 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=21.9
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEE
Q 016187 109 SVSSLAFSMDGQLLASGGLDGLVQIW 134 (394)
Q Consensus 109 ~V~~v~~s~~g~~l~t~s~d~~i~vw 134 (394)
.|..+..++.|..++-+|.+|.+.++
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVME 130 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEE
Confidence 57888899999999999999977664
No 415
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.86 E-value=1 Score=45.22 Aligned_cols=26 Identities=31% Similarity=0.416 Sum_probs=20.5
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCcEEE
Q 016187 108 DSVSSLAFSMDGQLLASGGLDGLVQI 133 (394)
Q Consensus 108 ~~V~~v~~s~~g~~l~t~s~d~~i~v 133 (394)
-.|..|.++|+|++||..|..+...+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~ 110 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVL 110 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEE
Confidence 35889999999999998887664433
No 416
>PHA02790 Kelch-like protein; Provisional
Probab=94.83 E-value=0.8 Score=44.01 Aligned_cols=141 Identities=12% Similarity=0.085 Sum_probs=69.4
Q ss_pred CCcEEEEecCC--CeEEEEEcCCCeeeEe--ecCcccCEEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCceEEEEecC
Q 016187 76 DATLVATGGGD--DKGFFWRINQGDWASE--IQGHKDSVSSLAFSMDGQLLASGGLDG---LVQIWDPSSGNLKCTLEGP 148 (394)
Q Consensus 76 ~~~~lasg~~d--~~v~~w~~~~~~~~~~--~~~h~~~V~~v~~s~~g~~l~t~s~d~---~i~vwd~~~~~~~~~~~~~ 148 (394)
++.+.+.||.+ ..+..|+..+.++... +.........+ .-+|+..+.||.++ .+..||+.+.++...-..+
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~ 395 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY 395 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC
Confidence 45566667753 3567788777666442 22111111122 23677778887653 4778998877664321111
Q ss_pred CCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceee--eecccCcCeEEEEECCCCCeEEEEeCC-----CcEEEEcCC
Q 016187 149 GGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLN--MFSGHGSSVTCGDFTPDGKTICTGSDD-----ATLRVWNPK 221 (394)
Q Consensus 149 ~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~~~d-----g~i~vwd~~ 221 (394)
.......+-.-++++.+.|+ ...+||..+.+-.. .+......... + .-+++..+.|+.+ .++..||+.
T Consensus 396 ~~r~~~~~~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~~~-~-v~~~~IYviGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 396 YPHYKSCALVFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNPEL-I-IVDNKLLLIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred CccccceEEEECCEEEEECC---ceEEecCCCCcEeEcCCCCCCccccEE-E-EECCEEEEECCcCCCcccceEEEEECC
Confidence 11111111223566666664 46778876544221 11111111111 1 2256677777654 245566655
Q ss_pred CC
Q 016187 222 SG 223 (394)
Q Consensus 222 ~~ 223 (394)
++
T Consensus 471 ~~ 472 (480)
T PHA02790 471 TY 472 (480)
T ss_pred CC
Confidence 43
No 417
>PRK13684 Ycf48-like protein; Provisional
Probab=94.78 E-value=3.1 Score=37.82 Aligned_cols=154 Identities=16% Similarity=0.167 Sum_probs=84.2
Q ss_pred CCCCEEEEEEcCCCCEEEEecCCCeEEE-EeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceE
Q 016187 148 PGGGVEWVSWHPRGHIVLAGSEDSTVWM-WNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENI 226 (394)
Q Consensus 148 ~~~~v~~~~~~~~~~~l~~~s~d~~i~i-w~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 226 (394)
..+.+..+.+.|++.+++++. .|.+.. ++-....-.....+-...++++.+.++++.++.+ ..|.+++=....+...
T Consensus 171 ~~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 171 AAGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred CcceEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 345788899999887665554 454442 2222111222222334577888999998876665 4576653233444443
Q ss_pred EEEcCC-CCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEec---cCCCCEEEEEECCCCCeEEEEeCCCcE
Q 016187 227 HVIRGH-PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV---SHTDSIECIGFSRSSPWAATGSMDQKL 302 (394)
Q Consensus 227 ~~~~~~-~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~---~h~~~i~~v~~~~~~~~l~s~s~dg~i 302 (394)
...... ......+..+.+.|++..+++| .+|.+. .....++.-.... .-....+.+.|..+...+++ +..|.|
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~i 325 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQRGVL 325 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CCCceE
Confidence 322211 0112357778888887766555 556554 3344444333322 12235677777766666554 456777
Q ss_pred EEEe
Q 016187 303 IIWD 306 (394)
Q Consensus 303 ~iwd 306 (394)
..|+
T Consensus 326 l~~~ 329 (334)
T PRK13684 326 LRYV 329 (334)
T ss_pred EEec
Confidence 6654
No 418
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.74 E-value=2.6 Score=36.65 Aligned_cols=146 Identities=19% Similarity=0.202 Sum_probs=86.8
Q ss_pred CEEEEEEcCCCCEEEEec---CCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEc-CCCCceE
Q 016187 151 GVEWVSWHPRGHIVLAGS---EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN-PKSGENI 226 (394)
Q Consensus 151 ~v~~~~~~~~~~~l~~~s---~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~ 226 (394)
.+...++++++..++... ....++++....... ....+ ..++.-.|++++...+....+...+++. ...++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~-~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVR-PVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcce-eeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 577889999998776655 334566665443322 11222 2556668999977666666666677773 3333321
Q ss_pred -EEEcCCCCcccCeEEEEEcCCCCEEEEEe---CCCcEEEEECC---CC--cE----EEEeccCCCCEEEEEECCCCCeE
Q 016187 227 -HVIRGHPYHTEGLTCLTISADSTLALSGS---KDGSVHMVNIT---TG--KV----VSSLVSHTDSIECIGFSRSSPWA 293 (394)
Q Consensus 227 -~~~~~~~~~~~~i~~~~~~~~~~~l~~g~---~dg~i~i~d~~---~~--~~----~~~~~~h~~~i~~v~~~~~~~~l 293 (394)
..+.... ....|+.+.++|||..++.-. .++.|.+--+. .+ .. +.........+..+.|.++..++
T Consensus 102 ~~~v~~~~-~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~ 180 (253)
T PF10647_consen 102 PVEVDWPG-LRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLV 180 (253)
T ss_pred eEEecccc-cCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEE
Confidence 1122111 111799999999998776544 35777766442 22 11 11122234678899999999887
Q ss_pred EEEeCCC
Q 016187 294 ATGSMDQ 300 (394)
Q Consensus 294 ~s~s~dg 300 (394)
+.+...+
T Consensus 181 V~~~~~~ 187 (253)
T PF10647_consen 181 VLGRSAG 187 (253)
T ss_pred EEeCCCC
Confidence 7665443
No 419
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.68 E-value=5.7 Score=40.40 Aligned_cols=193 Identities=11% Similarity=0.176 Sum_probs=104.5
Q ss_pred EEEecCCCeEEEEEcCCCeeeEeecCccc--------CEEEEEEc----------------CCCCEEEEEeCCCcEEEEe
Q 016187 80 VATGGGDDKGFFWRINQGDWASEIQGHKD--------SVSSLAFS----------------MDGQLLASGGLDGLVQIWD 135 (394)
Q Consensus 80 lasg~~d~~v~~w~~~~~~~~~~~~~h~~--------~V~~v~~s----------------~~g~~l~t~s~d~~i~vwd 135 (394)
+..++.++.+.-.|..+++.+-.+.-... ..+.+++. ..+.+++.++.|+.|.-.|
T Consensus 197 lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiALD 276 (764)
T TIGR03074 197 LYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIALD 276 (764)
T ss_pred EEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEEE
Confidence 33455667777777777765544321110 11223332 1345788888999999999
Q ss_pred CCCCceEEEEecCCCCEE-------------EEEEcC--CCCEEEEecC----------CCeEEEEeCCccceeeeecc-
Q 016187 136 PSSGNLKCTLEGPGGGVE-------------WVSWHP--RGHIVLAGSE----------DSTVWMWNADRAAYLNMFSG- 189 (394)
Q Consensus 136 ~~~~~~~~~~~~~~~~v~-------------~~~~~~--~~~~l~~~s~----------d~~i~iw~~~~~~~~~~~~~- 189 (394)
..+|+....+.. .+.+. .+.-.| .+..++.|+. +|.|+-+|..+++.+-.+..
T Consensus 277 A~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g 355 (764)
T TIGR03074 277 ADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPG 355 (764)
T ss_pred CCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecC
Confidence 999998765432 11111 011112 1335555542 68899999988876543321
Q ss_pred ---------------cC-cCe-EEEEECCCCCeEEEEe------------------CCCcEEEEcCCCCceEEEEcCCC-
Q 016187 190 ---------------HG-SSV-TCGDFTPDGKTICTGS------------------DDATLRVWNPKSGENIHVIRGHP- 233 (394)
Q Consensus 190 ---------------h~-~~v-~~~~~~~~~~~l~s~~------------------~dg~i~vwd~~~~~~~~~~~~~~- 233 (394)
+. ..+ ...++.+...+++.+. ..++|.-.|.++|+..-.++..+
T Consensus 356 ~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~h 435 (764)
T TIGR03074 356 NPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHH 435 (764)
T ss_pred CCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCC
Confidence 00 011 1234444444443322 23456666777777654443211
Q ss_pred -Ccc----cCeEEEEEcC-CCC---EEEEEeCCCcEEEEECCCCcEEEE
Q 016187 234 -YHT----EGLTCLTISA-DST---LALSGSKDGSVHMVNITTGKVVSS 273 (394)
Q Consensus 234 -~~~----~~i~~~~~~~-~~~---~l~~g~~dg~i~i~d~~~~~~~~~ 273 (394)
... ....-+.+.. +++ .++.++.+|.+.++|.++|+.+..
T Consensus 436 D~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 436 DLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred ccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 000 1122223332 453 788999999999999999886654
No 420
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.53 E-value=5.4 Score=39.40 Aligned_cols=195 Identities=12% Similarity=0.194 Sum_probs=96.5
Q ss_pred CCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEE--E--ecCCCCEEEEEEcCCC
Q 016187 86 DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCT--L--EGPGGGVEWVSWHPRG 161 (394)
Q Consensus 86 d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~--~--~~~~~~v~~~~~~~~~ 161 (394)
--.++|+++ +|..+..+......+-.+.|+.+.. |+....+|+++||++.. +.... + ......|.-+.+..+|
T Consensus 63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~G 139 (829)
T KOG2280|consen 63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNG 139 (829)
T ss_pred ceeEEEEec-cccchHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCc
Confidence 345777776 4454444433334777899998765 55677899999999753 22221 1 1122335555555566
Q ss_pred CEEEEecCCCeEEEEeCCccceeeee---cccCcCeEEEEECCCCC---eEEEEe-CCCcEEEEcCCCCc-eEEEEcCCC
Q 016187 162 HIVLAGSEDSTVWMWNADRAAYLNMF---SGHGSSVTCGDFTPDGK---TICTGS-DDATLRVWNPKSGE-NIHVIRGHP 233 (394)
Q Consensus 162 ~~l~~~s~d~~i~iw~~~~~~~~~~~---~~h~~~v~~~~~~~~~~---~l~s~~-~dg~i~vwd~~~~~-~~~~~~~~~ 233 (394)
-.+++ .+|.+.+-+-.....+..+ ++..-+.+|-...+++. .++-.. ..+ ..+.-..... ..+.+.
T Consensus 140 Vavlt--~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~--- 213 (829)
T KOG2280|consen 140 VAVLT--VSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALS--- 213 (829)
T ss_pred eEEEe--cCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccC---
Confidence 44444 3444444332222112221 11122222322222221 111110 000 0011111110 011111
Q ss_pred CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEec--cCCCCEEEEEECCCC
Q 016187 234 YHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLV--SHTDSIECIGFSRSS 290 (394)
Q Consensus 234 ~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~--~h~~~i~~v~~~~~~ 290 (394)
.....+..+++||+.++++--...|.|.+.+....+++..+. .|. +...++|..+.
T Consensus 214 ~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~-~p~qm~Wcgnd 271 (829)
T KOG2280|consen 214 WPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHD-PPKQMAWCGND 271 (829)
T ss_pred CCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCC-chHhceeecCC
Confidence 112457778999999999999999999999887766665554 222 22255555443
No 421
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.45 E-value=2.4 Score=41.65 Aligned_cols=113 Identities=15% Similarity=0.153 Sum_probs=72.0
Q ss_pred CEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeec-ccCcCeEEEEEC--CCCCeEEEEeCCCcEEEEcCCC-----
Q 016187 151 GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS-GHGSSVTCGDFT--PDGKTICTGSDDATLRVWNPKS----- 222 (394)
Q Consensus 151 ~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~-~h~~~v~~~~~~--~~~~~l~s~~~dg~i~vwd~~~----- 222 (394)
...-+.-+.-++..++-+....+.|||...+.....-. .....|.+++|. |+++.+++.+....|.++--..
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 34444455555655565566789999998776433221 346788889885 6899999999999999985321
Q ss_pred C----ceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 016187 223 G----ENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI 265 (394)
Q Consensus 223 ~----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~ 265 (394)
. ..+..+.-......+|....|-++|.++++++ ..+.++|-
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 1 12223222122234577788999988777653 46777763
No 422
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.36 E-value=4.4 Score=37.65 Aligned_cols=192 Identities=15% Similarity=0.152 Sum_probs=92.2
Q ss_pred CcEEEEecCCCeEEEEEcCC----CeeeEeecC---cc----cCEEEEEEcCCCCEEEEEeCC------CcEEEEeCCCC
Q 016187 77 ATLVATGGGDDKGFFWRINQ----GDWASEIQG---HK----DSVSSLAFSMDGQLLASGGLD------GLVQIWDPSSG 139 (394)
Q Consensus 77 ~~~lasg~~d~~v~~w~~~~----~~~~~~~~~---h~----~~V~~v~~s~~g~~l~t~s~d------~~i~vwd~~~~ 139 (394)
.+|++-|=..++|+|.|+.+ .++...++. +. ..-..+-.-|+|+.++|+-.| |-+.+.|-++.
T Consensus 88 r~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf 167 (461)
T PF05694_consen 88 RYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETF 167 (461)
T ss_dssp -EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT-
T ss_pred CcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccc
Confidence 45566666899999999874 334444432 11 112233334789888877432 46778888877
Q ss_pred ceEEEEecCC---CCEEEEEEcCCCCEEEEec--------------------CCCeEEEEeCCccceeeeecccC--cCe
Q 016187 140 NLKCTLEGPG---GGVEWVSWHPRGHIVLAGS--------------------EDSTVWMWNADRAAYLNMFSGHG--SSV 194 (394)
Q Consensus 140 ~~~~~~~~~~---~~v~~~~~~~~~~~l~~~s--------------------~d~~i~iw~~~~~~~~~~~~~h~--~~v 194 (394)
+.+...+... .--...-|+|..+.+++.. ...++.+||+.+.+.++.+.--. ..+
T Consensus 168 ~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~p 247 (461)
T PF05694_consen 168 EVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMP 247 (461)
T ss_dssp -EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEE
T ss_pred cccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCce
Confidence 7776665432 2334577888888877743 23579999999999888775432 234
Q ss_pred EEEEEC--CCCCe-EEEEeCCCcEEEE-cCCCCc----eEEEEcCCC-----Cc---------ccCeEEEEEcCCCCEEE
Q 016187 195 TCGDFT--PDGKT-ICTGSDDATLRVW-NPKSGE----NIHVIRGHP-----YH---------TEGLTCLTISADSTLAL 252 (394)
Q Consensus 195 ~~~~~~--~~~~~-l~s~~~dg~i~vw-d~~~~~----~~~~~~~~~-----~~---------~~~i~~~~~~~~~~~l~ 252 (394)
..+.|. |+..+ ++.+....+|-.| ....++ .+..+...+ .. ..-++-+.+|.|.++|.
T Consensus 248 LEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLY 327 (461)
T PF05694_consen 248 LEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLY 327 (461)
T ss_dssp EEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEE
T ss_pred EEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEE
Confidence 566665 44444 3334444555444 323332 111121100 00 12367889999999887
Q ss_pred EEe-CCCcEEEEECCCC
Q 016187 253 SGS-KDGSVHMVNITTG 268 (394)
Q Consensus 253 ~g~-~dg~i~i~d~~~~ 268 (394)
.+. ..|.|+.||+...
T Consensus 328 vs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 328 VSNWLHGDVRQYDISDP 344 (461)
T ss_dssp EEETTTTEEEEEE-SST
T ss_pred EEcccCCcEEEEecCCC
Confidence 665 6899999999753
No 423
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.11 E-value=2 Score=40.26 Aligned_cols=138 Identities=20% Similarity=0.179 Sum_probs=88.3
Q ss_pred EEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCC--------CEEEEEeCCCcEEEEeCC-CCceEEEEecCC
Q 016187 79 LVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG--------QLLASGGLDGLVQIWDPS-SGNLKCTLEGPG 149 (394)
Q Consensus 79 ~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g--------~~l~t~s~d~~i~vwd~~-~~~~~~~~~~~~ 149 (394)
++..|+.-..++--|++-|+.+....-|.+- -+.|.|+. +.|+ |-.+..|.--|+. .|..+. .....
T Consensus 482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~-v~esK 557 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIK-VVESK 557 (776)
T ss_pred EEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCcee-eeeeh
Confidence 3445666666666778888888888877665 57788842 3444 4445555555654 232221 11122
Q ss_pred CCEEEEEEcC----CCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCC
Q 016187 150 GGVEWVSWHP----RGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPK 221 (394)
Q Consensus 150 ~~v~~~~~~~----~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 221 (394)
...+.-.|+. .+-+++++|..|-|++||.-...-...+++-+..|..+..+.+|+++++.+. ..+-+-|++
T Consensus 558 dY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 558 DYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred hccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 2222222332 3458999999999999997655555667788889999999999998876654 456666654
No 424
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.97 E-value=3.8 Score=39.31 Aligned_cols=147 Identities=15% Similarity=0.231 Sum_probs=81.0
Q ss_pred cEEEEEEcCCCCcEEEEec--CCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCC----CEEEEEeCCCcEEEEeCC--
Q 016187 66 EVYSVACSPTDATLVATGG--GDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDG----QLLASGGLDGLVQIWDPS-- 137 (394)
Q Consensus 66 ~v~~~~~~p~~~~~lasg~--~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g----~~l~t~s~d~~i~vwd~~-- 137 (394)
+|..++|.. +.+++.|.= ..|.+++= ... .-|.-+-|..+.|+|-+ ..|+...-...|.||-+.
T Consensus 21 PvhGlaWTD-GkqVvLT~L~l~~gE~kfG---ds~----viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 21 PVHGLAWTD-GKQVVLTDLQLHNGEPKFG---DSK----VIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred cccceEecC-CCEEEEEeeeeeCCccccC---Ccc----EeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 677888863 556666531 11111110 111 22334458999999853 234445556789999764
Q ss_pred ---CCceEEE----EecCCC-CEEEEEEcCCCCEEEEecCCCeEEEEeCC--ccceeeeecccCcCeEEEEECCCCCeEE
Q 016187 138 ---SGNLKCT----LEGPGG-GVEWVSWHPRGHIVLAGSEDSTVWMWNAD--RAAYLNMFSGHGSSVTCGDFTPDGKTIC 207 (394)
Q Consensus 138 ---~~~~~~~----~~~~~~-~v~~~~~~~~~~~l~~~s~d~~i~iw~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 207 (394)
..+++.. +..+-. --..+-|||...+|+.-.....-.++++. +......+ ...+-|.|..|.+||++|+
T Consensus 93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLV 171 (671)
T PF15390_consen 93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLV 171 (671)
T ss_pred ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEE
Confidence 2333322 211100 01236799998877655444433444543 22333334 3456789999999999876
Q ss_pred EEe-CCCcEEEEcCC
Q 016187 208 TGS-DDATLRVWNPK 221 (394)
Q Consensus 208 s~~-~dg~i~vwd~~ 221 (394)
.+- ..=.-.+||-.
T Consensus 172 VAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 172 VAVGSSLHSYIWDSA 186 (671)
T ss_pred EEeCCeEEEEEecCc
Confidence 553 33345789843
No 425
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.93 E-value=3.3 Score=39.67 Aligned_cols=150 Identities=14% Similarity=0.101 Sum_probs=85.0
Q ss_pred ccCEEEEEEcCCCCE-EEEEe--CCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCC----CCEEEEecCCCeEEEEeCC
Q 016187 107 KDSVSSLAFSMDGQL-LASGG--LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPR----GHIVLAGSEDSTVWMWNAD 179 (394)
Q Consensus 107 ~~~V~~v~~s~~g~~-l~t~s--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~s~d~~i~iw~~~ 179 (394)
-.+|..++|. ||+. ++|.- .+|.+++=| . ..-+..+.|..++|.|- ...|++.-....|.+|.+.
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s----~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---S----KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccCC---c----cEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 3578899996 4554 44442 223322211 1 12334456888999985 3467777888999999874
Q ss_pred -----ccceeeeeccc---CcC--eEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCC
Q 016187 180 -----RAAYLNMFSGH---GSS--VTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADST 249 (394)
Q Consensus 180 -----~~~~~~~~~~h---~~~--v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 249 (394)
+.+.+..-..+ .-+ ...+.|+|....|+.-.....-.+++++.........- ...+.|.|.+|.+||+
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi--~~~G~IhCACWT~DG~ 168 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI--KTSGLIHCACWTKDGQ 168 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec--cCCceEEEEEecCcCC
Confidence 22222211111 111 13567999888776554444334566654432222111 1345689999999998
Q ss_pred EEEEEeC-CCcEEEEECC
Q 016187 250 LALSGSK-DGSVHMVNIT 266 (394)
Q Consensus 250 ~l~~g~~-dg~i~i~d~~ 266 (394)
.++++-. .=.-++||-.
T Consensus 169 RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 169 RLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEEEEeCCeEEEEEecCc
Confidence 8776643 3345678743
No 426
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.93 E-value=3.1 Score=34.36 Aligned_cols=173 Identities=21% Similarity=0.265 Sum_probs=89.6
Q ss_pred CCCEEEEEeC--CCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCC-EEEEecCCCeEEEEeCCccceeeeecccCcCe
Q 016187 118 DGQLLASGGL--DGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGH-IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSV 194 (394)
Q Consensus 118 ~g~~l~t~s~--d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v 194 (394)
+|.++.+.+. ...|++||+.+|+....-.-....+..=-...-+. +..-.-.++.-..+|..+-+.+..+...+. =
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~Ge-G 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGE-G 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCc-c
Confidence 4556666553 35799999999987654332211111000011122 223334677778888877766655443222 1
Q ss_pred EEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEE----cCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE
Q 016187 195 TCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVI----RGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV 270 (394)
Q Consensus 195 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~ 270 (394)
. ....|++.|+.+....+++.-|+++-.....+ .+.+ ...++-+-+- +|.+++--=.+..|...+..+|++
T Consensus 134 W--gLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~p--v~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV 208 (262)
T COG3823 134 W--GLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVP--VSKLNELEWV-DGELYANVWQTTRIARIDPDSGRV 208 (262)
T ss_pred e--eeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCee--cccccceeee-ccEEEEeeeeecceEEEcCCCCcE
Confidence 2 23456777887777778888887764433222 1111 1112222221 333333323344455556666665
Q ss_pred EEEec------------cCCCCEEEEEECCCC-CeEEEE
Q 016187 271 VSSLV------------SHTDSIECIGFSRSS-PWAATG 296 (394)
Q Consensus 271 ~~~~~------------~h~~~i~~v~~~~~~-~~l~s~ 296 (394)
+.-+. .|.+-.+.+++.|++ +++++|
T Consensus 209 ~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 209 VAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 54332 244567788888877 555655
No 427
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.82 E-value=0.36 Score=28.56 Aligned_cols=31 Identities=35% Similarity=0.371 Sum_probs=25.8
Q ss_pred cCEEEEEEcCCC---CEEEEEeCCCcEEEEeCCC
Q 016187 108 DSVSSLAFSMDG---QLLASGGLDGLVQIWDPSS 138 (394)
Q Consensus 108 ~~V~~v~~s~~g---~~l~t~s~d~~i~vwd~~~ 138 (394)
++|+++.|||+. .+|+-+-.-+.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999854 4888888889999999885
No 428
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.77 E-value=4.3 Score=35.45 Aligned_cols=167 Identities=14% Similarity=0.199 Sum_probs=108.1
Q ss_pred cccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 016187 188 SGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITT 267 (394)
Q Consensus 188 ~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~ 267 (394)
.|-...+.++.|+|+.+.|++......-.||=...|+.+..+...-.+ ..-.+.+..++.++++--.++.+.++.+..
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~--DpE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS--DPETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccC--ChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 444556899999999999999888888888887888888776543222 233456667788888888889998887765
Q ss_pred CcEEEE-------ec--cC-CCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc---c-eeccCC-------CCEEEEE
Q 016187 268 GKVVSS-------LV--SH-TDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLP---R-STCDHE-------DGVTCLM 326 (394)
Q Consensus 268 ~~~~~~-------~~--~h-~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~-~~~~~~-------~~v~~~~ 326 (394)
...+.. +. .+ ....+.++|+|....|..+=.-.-+.||.+..... . ....+. ..|.++.
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 532211 11 12 45678899999988887777777777776542210 0 001111 2356677
Q ss_pred EeCC-CCEEEEEeCCCeEEEEECCCCeEEEEe
Q 016187 327 WLGT-SKYVVTGCVDGKVRVWDSLSGDCVRTF 357 (394)
Q Consensus 327 ~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~ 357 (394)
|.+. +..|+-+..++.+.-.|. .|..+..+
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~-~G~~~~~l 270 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDL-SGEVIELL 270 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEec-CCCeeeeE
Confidence 7754 445555666666666664 35444443
No 429
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.76 E-value=1.9 Score=40.41 Aligned_cols=143 Identities=16% Similarity=0.273 Sum_probs=88.7
Q ss_pred EEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCC-------eEEEEeCCCcEEEEcCCCCc-eEEEEcCCCC
Q 016187 163 IVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGK-------TICTGSDDATLRVWNPKSGE-NIHVIRGHPY 234 (394)
Q Consensus 163 ~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~-------~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~ 234 (394)
++..|.....++-.|++.++.+..+..|... -+.|.|..+ .-+.|-++..|--.|++... .+.......+
T Consensus 482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY 559 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDY 559 (776)
T ss_pred EEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhc
Confidence 3455666677888889999998888888765 356777532 23445556667666776432 2222221111
Q ss_pred cccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 016187 235 HTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQ 308 (394)
Q Consensus 235 ~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~ 308 (394)
....-.+....-.+.++++|+..|-|++||--.-+....+.+....|-.+..+.+|.++++.+ ...+.+-|+.
T Consensus 560 ~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 560 KTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred cccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence 111111111223467899999999999999644333344556677888899999999876544 3466666653
No 430
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.76 E-value=7 Score=38.65 Aligned_cols=184 Identities=11% Similarity=0.087 Sum_probs=88.6
Q ss_pred CCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEE-cCCCCcccCeEEEEEcCC
Q 016187 169 EDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVI-RGHPYHTEGLTCLTISAD 247 (394)
Q Consensus 169 ~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~i~~~~~~~~ 247 (394)
.--.|+|++......-+..-.|. .+..+.|+.+. .|+....+|++++|++.... +... .+.+.....|.-+.+..+
T Consensus 62 a~~~I~If~~sG~lL~~~~w~~~-~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~ 138 (829)
T KOG2280|consen 62 ARPYIRIFNISGQLLGRILWKHG-ELIGMGWSDDE-ELICVQKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHN 138 (829)
T ss_pred cceeEEEEeccccchHHHHhcCC-CeeeecccCCc-eEEEEeccceEEEeecchhh-hcccccccccccCceeEEEEecC
Confidence 34557788776544333344454 66678888664 56677899999999975322 2110 111222223444444445
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEecc---CCCCEEEEEE-CCCCC--eEEEEe-CCCcEEEEeCC--CCCcceeccC
Q 016187 248 STLALSGSKDGSVHMVNITTGKVVSSLVS---HTDSIECIGF-SRSSP--WAATGS-MDQKLIIWDLQ--HSLPRSTCDH 318 (394)
Q Consensus 248 ~~~l~~g~~dg~i~i~d~~~~~~~~~~~~---h~~~i~~v~~-~~~~~--~l~s~s-~dg~i~iwd~~--~~~~~~~~~~ 318 (394)
|-.+++. +|.+.+.+-.....+.++.. ...+-.|-.. .|... .++-.. ..+ ..++-.. ..........
T Consensus 139 GVavlt~--~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~ 215 (829)
T KOG2280|consen 139 GVAVLTV--SGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWP 215 (829)
T ss_pred ceEEEec--CCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCC
Confidence 5444433 44444433222111222211 1111111111 11111 111100 000 0011111 1111111112
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEee
Q 016187 319 EDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFS 358 (394)
Q Consensus 319 ~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 358 (394)
...+..+..+|+.++|+--...|.|.+-+....+++..+.
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 3456778889999999999999999998887777666554
No 431
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.72 E-value=4.2 Score=35.18 Aligned_cols=177 Identities=16% Similarity=0.139 Sum_probs=105.8
Q ss_pred EEEEECCCCCeEEEEeCCC--cEEEEcCCCCceEEEEcCC-CCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE
Q 016187 195 TCGDFTPDGKTICTGSDDA--TLRVWNPKSGENIHVIRGH-PYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVV 271 (394)
Q Consensus 195 ~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~ 271 (394)
..+.|..+|.++-+.+.-| .|+.+|+.+++........ ....++++-+ +++++...=.++...+||..+-+.+
T Consensus 48 QGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~----~d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 48 QGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL----GDKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE----TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred ccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE----CCEEEEEEecCCeEEEEccccceEE
Confidence 4667767788877777766 6999999999876554422 1223334332 3445555567889999999999888
Q ss_pred EEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceecc---CC---CCEEEEEEeCCCCEEEEEeCCCeEEE
Q 016187 272 SSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCD---HE---DGVTCLMWLGTSKYVVTGCVDGKVRV 345 (394)
Q Consensus 272 ~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~---~~v~~~~~~~~~~~l~sg~~dg~i~i 345 (394)
.++... ..=..++ .++..|+......+|.++|..+........ .. ..++-+.|. +|...|=-=....|..
T Consensus 124 ~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~ 199 (264)
T PF05096_consen 124 GTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVR 199 (264)
T ss_dssp EEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEE
T ss_pred EEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEE
Confidence 887543 2333343 456667777777889999987653332211 11 235556665 4444443444566777
Q ss_pred EECCCCeEEEEeec------------c---cCceeEEEEccCCCEE-EEE
Q 016187 346 WDSLSGDCVRTFSG------------H---RDAIQAISVSAHQDFL-VSV 379 (394)
Q Consensus 346 wd~~~~~~~~~~~~------------h---~~~v~~l~~~~~~~~l-~s~ 379 (394)
.|..+|+.+..+.- + .+..+.+|+.|..+.| +||
T Consensus 200 Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 200 IDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 89999998876531 1 2457999998876554 454
No 432
>PLN02193 nitrile-specifier protein
Probab=93.61 E-value=7.1 Score=37.46 Aligned_cols=146 Identities=13% Similarity=0.157 Sum_probs=69.5
Q ss_pred CcEEEEecCC-------CeEEEEEcCCCeeeEeec-C---cccCEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCc
Q 016187 77 ATLVATGGGD-------DKGFFWRINQGDWASEIQ-G---HKDSVSSLAFSMDGQLLASGGLD-----GLVQIWDPSSGN 140 (394)
Q Consensus 77 ~~~lasg~~d-------~~v~~w~~~~~~~~~~~~-~---h~~~V~~v~~s~~g~~l~t~s~d-----~~i~vwd~~~~~ 140 (394)
..+++-||.+ ..+..||+.+.++...-. + ........+..-++.+++.|+.+ ..+.++|+.+.+
T Consensus 176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~ 255 (470)
T PLN02193 176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNE 255 (470)
T ss_pred CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCE
Confidence 3455556643 236677887777653211 1 00001111122345566666654 357788988776
Q ss_pred eEEEEec---CCCCEEEEEEcCCCCEEEEecCCC-----eEEEEeCCccceeeee-----cccCcCeEEEEECCCCCeEE
Q 016187 141 LKCTLEG---PGGGVEWVSWHPRGHIVLAGSEDS-----TVWMWNADRAAYLNMF-----SGHGSSVTCGDFTPDGKTIC 207 (394)
Q Consensus 141 ~~~~~~~---~~~~v~~~~~~~~~~~l~~~s~d~-----~i~iw~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~l~ 207 (394)
....-.. +.......+..-++++++.|+.++ .+..||+.+.+-...- .........+. -+++..+
T Consensus 256 W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~--~~gkiyv 333 (470)
T PLN02193 256 WKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV--VQGKVWV 333 (470)
T ss_pred EEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE--ECCcEEE
Confidence 5432111 111111111223456667776543 4667777654322110 00111111112 2566667
Q ss_pred EEeCC----CcEEEEcCCCCc
Q 016187 208 TGSDD----ATLRVWNPKSGE 224 (394)
Q Consensus 208 s~~~d----g~i~vwd~~~~~ 224 (394)
.++.+ ..+.+||+.+.+
T Consensus 334 iGG~~g~~~~dv~~yD~~t~~ 354 (470)
T PLN02193 334 VYGFNGCEVDDVHYYDPVQDK 354 (470)
T ss_pred EECCCCCccCceEEEECCCCE
Confidence 76655 458889987764
No 433
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=93.49 E-value=4.6 Score=34.92 Aligned_cols=229 Identities=15% Similarity=0.131 Sum_probs=136.3
Q ss_pred EEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEE---
Q 016187 67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC--- 143 (394)
Q Consensus 67 v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~--- 143 (394)
-+.|+-.|+ +.+-.++...+.+=--|..+++....--+....-..|...|||..-++-+.. .|.-.|.++.+...
T Consensus 64 p~dvapapd-G~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~l 141 (353)
T COG4257 64 PFDVAPAPD-GAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPL 141 (353)
T ss_pred ccccccCCC-CceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeec
Confidence 356677775 4455566666666666777777766555555556678888998876655544 45556766665432
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEecCC---------CeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCc
Q 016187 144 TLEGPGGGVEWVSWHPRGHIVLAGSED---------STVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDAT 214 (394)
Q Consensus 144 ~~~~~~~~v~~~~~~~~~~~l~~~s~d---------~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 214 (394)
..+...+..+...|.+.|++.+++... +.|++|... .......+...|+|..-++.-.+..
T Consensus 142 p~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP----------qG~gpyGi~atpdGsvwyaslagna 211 (353)
T COG4257 142 PLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP----------QGGGPYGICATPDGSVWYASLAGNA 211 (353)
T ss_pred ccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC----------CCCCCcceEECCCCcEEEEeccccc
Confidence 123344567788899999988887631 233344332 1223345677899998888777788
Q ss_pred EEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE-EEeccCCCCEEEEEECCCCCeE
Q 016187 215 LRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVV-SSLVSHTDSIECIGFSRSSPWA 293 (394)
Q Consensus 215 i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~-~~~~~h~~~i~~v~~~~~~~~l 293 (394)
|-..|..++.. ..+..........+.+..+|.+...++-...+.+.-+|.....-. -.+.+....-.++.....+..-
T Consensus 212 iaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW 290 (353)
T COG4257 212 IARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVW 290 (353)
T ss_pred eEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEE
Confidence 88888877632 223222111234555667788888888777888888887554311 1233333334455555544433
Q ss_pred EEEeCCCcEEEEeCC
Q 016187 294 ATGSMDQKLIIWDLQ 308 (394)
Q Consensus 294 ~s~s~dg~i~iwd~~ 308 (394)
++--..|.|.-+|..
T Consensus 291 ~sea~agai~rfdpe 305 (353)
T COG4257 291 LSEADAGAIGRFDPE 305 (353)
T ss_pred eeccccCceeecCcc
Confidence 333334445445543
No 434
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.46 E-value=0.097 Score=51.79 Aligned_cols=136 Identities=10% Similarity=0.218 Sum_probs=78.2
Q ss_pred CcEEEEECC--CCcEEEEec-----cCCCCEEEEEEC---CCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEE--
Q 016187 258 GSVHMVNIT--TGKVVSSLV-----SHTDSIECIGFS---RSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCL-- 325 (394)
Q Consensus 258 g~i~i~d~~--~~~~~~~~~-----~h~~~i~~v~~~---~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~-- 325 (394)
|.+.+|++. .|++...+. .....+.-|.|. ++..++..+-.++.+++..+.+........|...++.+
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~ 232 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAF 232 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHH
Confidence 456667653 343322221 122233344444 35567777888898888766544333333455443322
Q ss_pred ---------EEeCCCCEEEEEeCCCeEEEEEC-----CCCeEEEEeeccc-CceeEEEEccCC---------CEEEEEe-
Q 016187 326 ---------MWLGTSKYVVTGCVDGKVRVWDS-----LSGDCVRTFSGHR-DAIQAISVSAHQ---------DFLVSVS- 380 (394)
Q Consensus 326 ---------~~~~~~~~l~sg~~dg~i~iwd~-----~~~~~~~~~~~h~-~~v~~l~~~~~~---------~~l~s~s- 380 (394)
..+|||..++.++.||.++.|-+ ..-+|+...+.|. .+-.|..|+.+. .++++++
T Consensus 233 ~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd 312 (1283)
T KOG1916|consen 233 FAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTD 312 (1283)
T ss_pred HhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEeccc
Confidence 25799999999999999888854 3445666677776 333333344322 2455554
Q ss_pred CCCcEEEEeccCC
Q 016187 381 LDGTARVFEIADF 393 (394)
Q Consensus 381 ~dg~i~iw~~~~~ 393 (394)
..+.+++|...-|
T Consensus 313 ~nre~k~w~~a~w 325 (1283)
T KOG1916|consen 313 VNREEKFWAEAPW 325 (1283)
T ss_pred CCcceeEeeccch
Confidence 4567999976544
No 435
>PLN02153 epithiospecifier protein
Probab=93.45 E-value=6 Score=36.10 Aligned_cols=104 Identities=16% Similarity=0.203 Sum_probs=52.4
Q ss_pred CcEEEEecCC-------CeEEEEEcCCCeeeEeecC-c--cc---CEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCC
Q 016187 77 ATLVATGGGD-------DKGFFWRINQGDWASEIQG-H--KD---SVSSLAFSMDGQLLASGGLD-----GLVQIWDPSS 138 (394)
Q Consensus 77 ~~~lasg~~d-------~~v~~w~~~~~~~~~~~~~-h--~~---~V~~v~~s~~g~~l~t~s~d-----~~i~vwd~~~ 138 (394)
..+.+.||.+ ..+.++|+.+.++...-.. . .. ....+.+ ++.+++.|+.+ ..+.+||+.+
T Consensus 33 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t 110 (341)
T PLN02153 33 DKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTVK 110 (341)
T ss_pred CEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECCC
Confidence 4455666653 3577888887776542211 0 10 1222222 45566667653 3577889887
Q ss_pred CceEEEEec-----CCCCEEEEEEcCCCCEEEEecCC-----------CeEEEEeCCccc
Q 016187 139 GNLKCTLEG-----PGGGVEWVSWHPRGHIVLAGSED-----------STVWMWNADRAA 182 (394)
Q Consensus 139 ~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~s~d-----------~~i~iw~~~~~~ 182 (394)
.+....-.. +.......+...++++++.|+.+ ..+.+||..+.+
T Consensus 111 ~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~ 170 (341)
T PLN02153 111 NEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGK 170 (341)
T ss_pred CEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCe
Confidence 665432110 11111112222345666777653 246778876543
No 436
>PRK13684 Ycf48-like protein; Provisional
Probab=93.25 E-value=6.4 Score=35.83 Aligned_cols=264 Identities=11% Similarity=0.066 Sum_probs=126.2
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CceEEEE--e--cCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcc
Q 016187 107 KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSS-GNLKCTL--E--GPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRA 181 (394)
Q Consensus 107 ~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~-~~~~~~~--~--~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~ 181 (394)
...+++|.|....+-+++|. ++. ||.... |+.-... . .....+..+.|.++ ..+++ +..+.|..- .+.+
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~--il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i~~S-~DgG 118 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRT--LLETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLLLHT-TDGG 118 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCE--EEEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceEEEE-CCCC
Confidence 55788999986666666664 443 333322 2211111 1 11234667777643 33443 344444332 1112
Q ss_pred ceeee------ecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEe
Q 016187 182 AYLNM------FSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGS 255 (394)
Q Consensus 182 ~~~~~------~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~ 255 (394)
+.-.. +.++. ....++.+ +..++. +..|.|..= ...|+....+... ....+..+.+.|++.+++++.
T Consensus 119 ~tW~~~~~~~~~~~~~--~~i~~~~~-~~~~~~-g~~G~i~~S-~DgG~tW~~~~~~--~~g~~~~i~~~~~g~~v~~g~ 191 (334)
T PRK13684 119 KNWTRIPLSEKLPGSP--YLITALGP-GTAEMA-TNVGAIYRT-TDGGKNWEALVED--AAGVVRNLRRSPDGKYVAVSS 191 (334)
T ss_pred CCCeEccCCcCCCCCc--eEEEEECC-Ccceee-eccceEEEE-CCCCCCceeCcCC--CcceEEEEEECCCCeEEEEeC
Confidence 11111 11221 11122222 223333 333433211 1223443333221 134578888999887766554
Q ss_pred CCCcEEE-EECCCCcEEEEe-ccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCc---cee--ccCCCCEEEEEEe
Q 016187 256 KDGSVHM-VNITTGKVVSSL-VSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLP---RST--CDHEDGVTCLMWL 328 (394)
Q Consensus 256 ~dg~i~i-~d~~~~~~~~~~-~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~--~~~~~~v~~~~~~ 328 (394)
.|.+.. ++ ..++.-..+ ..-...++++.+.++++.++.+ ..|.+++=....... ... ......+..+.+.
T Consensus 192 -~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~ 268 (334)
T PRK13684 192 -RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYR 268 (334)
T ss_pred -CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEc
Confidence 454432 22 122222222 2234678899999998876665 456654321211111 000 0112346778888
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEe---ecccCceeEEEEccCCCEEEEEeCCCcEEEEe
Q 016187 329 GTSKYVVTGCVDGKVRVWDSLSGDCVRTF---SGHRDAIQAISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 329 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~---~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
+++..+++ +.+|.|.. ....|+.-... .+-......+.|..+++.++ ++..|.|..|+
T Consensus 269 ~~~~~~~~-G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~ 329 (334)
T PRK13684 269 TPGEIWAG-GGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYV 329 (334)
T ss_pred CCCCEEEE-cCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEec
Confidence 87776554 45676553 33334333322 22233577788876666554 77788887765
No 437
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.18 E-value=5.6 Score=35.01 Aligned_cols=208 Identities=14% Similarity=0.204 Sum_probs=118.5
Q ss_pred cEEEEEEcCCCCcEEEEecCCCeEEEEEcC-------CCeeeEeecC-----cccCEEEEEEcCCCC------------E
Q 016187 66 EVYSVACSPTDATLVATGGGDDKGFFWRIN-------QGDWASEIQG-----HKDSVSSLAFSMDGQ------------L 121 (394)
Q Consensus 66 ~v~~~~~~p~~~~~lasg~~d~~v~~w~~~-------~~~~~~~~~~-----h~~~V~~v~~s~~g~------------~ 121 (394)
.-+.|+++|.+ .+-++....+...+||.+ ...++.++.. -....+.+.|+.... .
T Consensus 24 N~WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGG-PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCC-CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 45899999965 455666778899999986 1223334442 234577777774322 3
Q ss_pred EEEEeCCCcEEEEeCCCCce-----EEEEec-CCCC-EEEEEEcCC--CCEE-EEecCCCeEEEEeCCccceee--ee--
Q 016187 122 LASGGLDGLVQIWDPSSGNL-----KCTLEG-PGGG-VEWVSWHPR--GHIV-LAGSEDSTVWMWNADRAAYLN--MF-- 187 (394)
Q Consensus 122 l~t~s~d~~i~vwd~~~~~~-----~~~~~~-~~~~-v~~~~~~~~--~~~l-~~~s~d~~i~iw~~~~~~~~~--~~-- 187 (394)
++.++.||+|.-|...-+.. ...+.. ..+. ...+++... +.+| ++=-..++|.++|-.-.+... .+
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D 182 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID 182 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence 56788999999998543222 112221 1233 344555543 4444 444467889988754322110 00
Q ss_pred ---cc-----------cCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcC------C
Q 016187 188 ---SG-----------HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISA------D 247 (394)
Q Consensus 188 ---~~-----------h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~------~ 247 (394)
.. ..-.|+...-.++++.=+.|..-|.|-++|+. ++.++.+... ..-.....++..| .
T Consensus 183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~-g~LNaPWG~a~APa~FG~~s 260 (336)
T TIGR03118 183 PALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASS-GRLNAPWGLAIAPESFGSLS 260 (336)
T ss_pred CCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccC-CcccCCceeeeChhhhCCCC
Confidence 00 00112222222333333444556789999974 5555555321 1222334455544 4
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEecc
Q 016187 248 STLALSGSKDGSVHMVNITTGKVVSSLVS 276 (394)
Q Consensus 248 ~~~l~~g~~dg~i~i~d~~~~~~~~~~~~ 276 (394)
+.+|+.--.||+|..+|..+++.+..+..
T Consensus 261 g~lLVGNFGDG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 261 GALLVGNFGDGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred CCeEEeecCCceeEEecCCCCceeeeecC
Confidence 67777777899999999999988877754
No 438
>PRK10115 protease 2; Provisional
Probab=92.69 E-value=12 Score=37.72 Aligned_cols=238 Identities=11% Similarity=0.068 Sum_probs=111.4
Q ss_pred cEEEEEEcCCCCcEEEEec----CCCeEEEEEcCCCeeeE-eecCcccCEEEEEEcCCCCEEEEEeCC------CcEEEE
Q 016187 66 EVYSVACSPTDATLVATGG----GDDKGFFWRINQGDWAS-EIQGHKDSVSSLAFSMDGQLLASGGLD------GLVQIW 134 (394)
Q Consensus 66 ~v~~~~~~p~~~~~lasg~----~d~~v~~w~~~~~~~~~-~~~~h~~~V~~v~~s~~g~~l~t~s~d------~~i~vw 134 (394)
.+..+.++|++..+..+.. ...++++-++.+++.+. .+.+ .. ..++|++|++.|+-...+ ..|..+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~-~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN-VE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC-cc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 3566778996554443322 23346777887776432 2222 22 469999999876655432 367778
Q ss_pred eCCCC--ceEEEEecCCCCEEEEEE-cCCCCEEEEec---CCCeEEEEeCC--ccceeeeecccCcCeEEEEECCCCCeE
Q 016187 135 DPSSG--NLKCTLEGPGGGVEWVSW-HPRGHIVLAGS---EDSTVWMWNAD--RAAYLNMFSGHGSSVTCGDFTPDGKTI 206 (394)
Q Consensus 135 d~~~~--~~~~~~~~~~~~v~~~~~-~~~~~~l~~~s---~d~~i~iw~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l 206 (394)
++.++ +....+........-..+ +.++++++..+ .++.+.+++.. .+.....+ .+...+..-..+..+.+.
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ly 283 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFL-PRRKDHEYSLDHYQHRFY 283 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEE-ECCCCCEEEEEeCCCEEE
Confidence 88887 334444444444432233 33666554433 34578888842 22211111 222222111112223332
Q ss_pred EEEeCC-C--cEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEE--EECCCCcEEEEec-cCCCC
Q 016187 207 CTGSDD-A--TLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM--VNITTGKVVSSLV-SHTDS 280 (394)
Q Consensus 207 ~s~~~d-g--~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i--~d~~~~~~~~~~~-~h~~~ 280 (394)
+....+ . .|...++........+-.+. ....+..+.+. .+.++++...+|.-++ +++.++ .+..+. .....
T Consensus 284 ~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~-~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~~~~~ 360 (686)
T PRK10115 284 LRSNRHGKNFGLYRTRVRDEQQWEELIPPR-ENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR-EVIGIAFDDPAY 360 (686)
T ss_pred EEEcCCCCCceEEEecCCCcccCeEEECCC-CCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC-ceEEecCCCCce
Confidence 322221 2 23333443211122222210 12246666666 4456666666776554 454333 333332 22222
Q ss_pred EEEEEEC--CCCC-eEEEEe---CCCcEEEEeCCCC
Q 016187 281 IECIGFS--RSSP-WAATGS---MDQKLIIWDLQHS 310 (394)
Q Consensus 281 i~~v~~~--~~~~-~l~s~s---~dg~i~iwd~~~~ 310 (394)
+..+.++ +++. ++++.+ .-+.+..+|+.+.
T Consensus 361 ~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 361 VTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred EeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 3333344 3333 443333 2356777777654
No 439
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.49 E-value=0.7 Score=27.37 Aligned_cols=31 Identities=19% Similarity=0.555 Sum_probs=25.7
Q ss_pred cCeEEEEECCC-C--CeEEEEeCCCcEEEEcCCC
Q 016187 192 SSVTCGDFTPD-G--KTICTGSDDATLRVWNPKS 222 (394)
Q Consensus 192 ~~v~~~~~~~~-~--~~l~s~~~dg~i~vwd~~~ 222 (394)
+.+.++.|+|. + .+|+-+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 35789999984 3 5888888889999999985
No 440
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=92.47 E-value=3.7 Score=36.14 Aligned_cols=75 Identities=17% Similarity=0.254 Sum_probs=53.5
Q ss_pred CCCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEe------CCCcEEEEeCCCCceEEEEec----CCCCEEE
Q 016187 85 GDDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGG------LDGLVQIWDPSSGNLKCTLEG----PGGGVEW 154 (394)
Q Consensus 85 ~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s------~d~~i~vwd~~~~~~~~~~~~----~~~~v~~ 154 (394)
....+.+||..+.++...-.+-.+.|++|.|..+.++++.|. ....+..||..+......-.+ -.++|..
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CCCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEE
Confidence 466788999999998887777778999999997767777664 345678899887765322221 2367777
Q ss_pred EEEcC
Q 016187 155 VSWHP 159 (394)
Q Consensus 155 ~~~~~ 159 (394)
+.+..
T Consensus 94 ~~~~~ 98 (281)
T PF12768_consen 94 LTFIS 98 (281)
T ss_pred EEeec
Confidence 76643
No 441
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=92.05 E-value=2.1 Score=39.93 Aligned_cols=84 Identities=19% Similarity=0.298 Sum_probs=56.1
Q ss_pred cCcccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCC-CEEEEEEcCCC----------------C--EE
Q 016187 104 QGHKDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGG-GVEWVSWHPRG----------------H--IV 164 (394)
Q Consensus 104 ~~h~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~----------------~--~l 164 (394)
......+.+++.+|.+++.|+...=|.|.++|+.++..+...++-.+ .+.++.-...+ . ++
T Consensus 304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~Lv 383 (415)
T PF14655_consen 304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLV 383 (415)
T ss_pred ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEE
Confidence 33456689999999999998887789999999999877666655332 22222211110 1 23
Q ss_pred EEecCCCeEEEEeCCccceeeee
Q 016187 165 LAGSEDSTVWMWNADRAAYLNMF 187 (394)
Q Consensus 165 ~~~s~d~~i~iw~~~~~~~~~~~ 187 (394)
+-+-.-|.|.+|.++.++.+..+
T Consensus 384 IyaprRg~lEvW~~~~g~Rv~a~ 406 (415)
T PF14655_consen 384 IYAPRRGILEVWSMRQGPRVAAF 406 (415)
T ss_pred EEeccCCeEEEEecCCCCEEEEE
Confidence 44556788899998877765544
No 442
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=91.90 E-value=8.1 Score=33.80 Aligned_cols=193 Identities=13% Similarity=0.125 Sum_probs=107.0
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEec-CCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccc---
Q 016187 107 KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEG-PGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA--- 182 (394)
Q Consensus 107 ~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~--- 182 (394)
.+-+..+.++. ++...+..+.-++|.|+.+......+.. ..... .-.|.-.|+++..+..|.-+.+.|+.+..
T Consensus 86 ~~l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gy-aygv~vsGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 86 RDLFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGY-AYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhhheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccCCce-EEEEEecCCEEEEeeccCcEEEEECCCCCCce
Confidence 34456666764 5666677777899999887653222111 11111 23455568888888877777888876532
Q ss_pred eeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 016187 183 YLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHM 262 (394)
Q Consensus 183 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i 262 (394)
....+.........++.+ |++-..+..|+-+.+-|+........+. +.-....+.++..+++--+++.. +.-+.+
T Consensus 163 lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~-~~n~g~g~~sv~vsdnr~y~vvy--~egvli 237 (370)
T COG5276 163 LAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIG-SYNTGPGTYSVSVSDNRAYLVVY--DEGVLI 237 (370)
T ss_pred eeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEE-EEecCCceEEEEecCCeeEEEEc--ccceEE
Confidence 222333333333445554 6777778889999999998765443332 21122367777777776665554 345667
Q ss_pred EECCCCcEEEEe--ccCCC--CEEEEEECCCCCeEEEEeCCCcEEEEeCCC
Q 016187 263 VNITTGKVVSSL--VSHTD--SIECIGFSRSSPWAATGSMDQKLIIWDLQH 309 (394)
Q Consensus 263 ~d~~~~~~~~~~--~~h~~--~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~ 309 (394)
.|....+....+ ..... .++.+..+ +++......+.-+.+-|+..
T Consensus 238 vd~s~~ssp~~~gsyet~~p~~~s~v~Vs--~~~~Yvadga~gl~~idisn 286 (370)
T COG5276 238 VDVSGPSSPTVFGSYETSNPVSISTVPVS--GEYAYVADGAKGLPIIDISN 286 (370)
T ss_pred EecCCCCCceEeeccccCCcccccceecc--cceeeeeccccCceeEeccC
Confidence 776554422211 11122 22223444 34444444455555556543
No 443
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.79 E-value=1.6 Score=36.88 Aligned_cols=64 Identities=17% Similarity=0.305 Sum_probs=49.2
Q ss_pred EeCCCCEEEEEeCCCeEEEEECCCCeEEEE-------ee-------cccCceeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 327 WLGTSKYVVTGCVDGKVRVWDSLSGDCVRT-------FS-------GHRDAIQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 327 ~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~-------~~-------~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
....+.+|++-+.+|.+++||+.+++++.. +. .....|..+.++.+|.-|++-+ +|....|+.+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 345788999999999999999999887542 22 2456788899998888887766 4778888754
No 444
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=91.68 E-value=10 Score=34.46 Aligned_cols=229 Identities=13% Similarity=0.161 Sum_probs=112.2
Q ss_pred EEEEEEcCCCCcEEEEecCCCeEEEEEcCCCee---eEee----cCcccCEEEEEEcCC----CCEEEEEeCC-------
Q 016187 67 VYSVACSPTDATLVATGGGDDKGFFWRINQGDW---ASEI----QGHKDSVSSLAFSMD----GQLLASGGLD------- 128 (394)
Q Consensus 67 v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~---~~~~----~~h~~~V~~v~~s~~----g~~l~t~s~d------- 128 (394)
-++++|.|+ +.++++ -..++|++.+ ..+.. +..+ .........++|+|+ +.+.+..+..
T Consensus 4 P~~~a~~pd-G~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 4 PRSMAFLPD-GRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp EEEEEEETT-SCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred ceEEEEeCC-CcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 468999996 567765 4589999998 34443 2222 234567899999995 4433333321
Q ss_pred -CcEEEEeCCCC--c-----eE-EEEec---CCCCEEEEEEcCCCCEEEEecCCC-------------eEEEEeCCccc-
Q 016187 129 -GLVQIWDPSSG--N-----LK-CTLEG---PGGGVEWVSWHPRGHIVLAGSEDS-------------TVWMWNADRAA- 182 (394)
Q Consensus 129 -~~i~vwd~~~~--~-----~~-~~~~~---~~~~v~~~~~~~~~~~l~~~s~d~-------------~i~iw~~~~~~- 182 (394)
..|.-|....+ . .+ ..+.. ....-..+.|.|++.++++.+..+ .|.-.+.....
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p 160 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP 160 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence 23444444333 1 11 11222 223456699999998766654433 22223322110
Q ss_pred -----------eeee-ecccCcCeEEEEECCC-CCeEEEE-eCCCcEEEEcCCCCce-----------------------
Q 016187 183 -----------YLNM-FSGHGSSVTCGDFTPD-GKTICTG-SDDATLRVWNPKSGEN----------------------- 225 (394)
Q Consensus 183 -----------~~~~-~~~h~~~v~~~~~~~~-~~~l~s~-~~dg~i~vwd~~~~~~----------------------- 225 (394)
.... -.|+.. ...++|.|. |++.++= +.+..=.|--+..+..
T Consensus 161 ~dnP~~~~~~~~~~i~A~GlRN-~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~ 239 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGLRN-PFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSC 239 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE--SE-EEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-
T ss_pred CCCccccCCCceEEEEEeCCCc-cccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCC
Confidence 0001 123333 346788887 5544321 2222222221222110
Q ss_pred ------EEEEcCCCCcccCeEEEEEcC-------CCCEEEEEeCCCcEEEEECCCCcEEE---Ee-ccCCCCEEEEEECC
Q 016187 226 ------IHVIRGHPYHTEGLTCLTISA-------DSTLALSGSKDGSVHMVNITTGKVVS---SL-VSHTDSIECIGFSR 288 (394)
Q Consensus 226 ------~~~~~~~~~~~~~i~~~~~~~-------~~~~l~~g~~dg~i~i~d~~~~~~~~---~~-~~h~~~i~~v~~~~ 288 (394)
...+. +...++.+.+-. .+.++++.-..+.|....+..+..+. .+ ......+..+++.|
T Consensus 240 ~~~~~P~~~~~----~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p 315 (331)
T PF07995_consen 240 PGFVPPVFAYP----PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP 315 (331)
T ss_dssp TTS---SEEET----TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET
T ss_pred CCcCccceeec----CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcC
Confidence 00000 112344454432 34566666667788888876553222 22 23344799999999
Q ss_pred CCCeEEEEeCCCcEE
Q 016187 289 SSPWAATGSMDQKLI 303 (394)
Q Consensus 289 ~~~~l~s~s~dg~i~ 303 (394)
+|.+.++.+.+|+|.
T Consensus 316 DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 316 DGALYVSDDSDGKIY 330 (331)
T ss_dssp TSEEEEEE-TTTTEE
T ss_pred CCeEEEEECCCCeEe
Confidence 999888888888764
No 445
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=91.60 E-value=8.4 Score=33.38 Aligned_cols=186 Identities=12% Similarity=0.032 Sum_probs=114.1
Q ss_pred EEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcC
Q 016187 152 VEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRG 231 (394)
Q Consensus 152 v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 231 (394)
-..++-.|+|...+++...+.|--.|..+++....--+.......+..-|||..-++=+.. -|.-.|.++.+.. .+..
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt-~f~l 141 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVT-RFPL 141 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceE-Eeec
Confidence 3456778888888888888888888888888776666666667778888988765554433 5666677665432 2211
Q ss_pred C-CCcccCeEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCCc
Q 016187 232 H-PYHTEGLTCLTISADSTLALSGSKD---------GSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQK 301 (394)
Q Consensus 232 ~-~~~~~~i~~~~~~~~~~~l~~g~~d---------g~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~ 301 (394)
. ......+....|.+.|++.+++... +.|++|+...| ...+.|+..|++..-++.-.++.
T Consensus 142 p~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG----------~gpyGi~atpdGsvwyaslagna 211 (353)
T COG4257 142 PLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQG----------GGPYGICATPDGSVWYASLAGNA 211 (353)
T ss_pred ccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCC----------CCCcceEECCCCcEEEEeccccc
Confidence 1 1123457788999999999988632 23344433222 23456777888887666666666
Q ss_pred EEEEeCCCCCcceec---cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 016187 302 LIIWDLQHSLPRSTC---DHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSL 349 (394)
Q Consensus 302 i~iwd~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~ 349 (394)
|...|.......... ........+.-.|.++.-++-...+.+.-+|-.
T Consensus 212 iaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs 262 (353)
T COG4257 212 IARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPS 262 (353)
T ss_pred eEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcc
Confidence 766665443221111 111122333345666666666666777766643
No 446
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=91.03 E-value=12 Score=34.12 Aligned_cols=54 Identities=20% Similarity=0.315 Sum_probs=28.0
Q ss_pred CCCCEEEEEeCC-----------CcEEEEeCCCCceEEEEecCCCCEEE-EEE-cCCCCEEEEecCC
Q 016187 117 MDGQLLASGGLD-----------GLVQIWDPSSGNLKCTLEGPGGGVEW-VSW-HPRGHIVLAGSED 170 (394)
Q Consensus 117 ~~g~~l~t~s~d-----------~~i~vwd~~~~~~~~~~~~~~~~v~~-~~~-~~~~~~l~~~s~d 170 (394)
-++++.+.|+.+ ..+..||+.+.+.............. ... ..++++++.|+.+
T Consensus 62 ~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 62 IDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred ECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 356777777753 24677888776654321111111111 112 2467777777754
No 447
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=90.82 E-value=16 Score=36.64 Aligned_cols=103 Identities=15% Similarity=0.196 Sum_probs=66.2
Q ss_pred CCEEEEecCCCeEEEEeCCc-------c----c---------eeeeecccCcCeEEEEEC--CCCCeEEEEeCCCcEEEE
Q 016187 161 GHIVLAGSEDSTVWMWNADR-------A----A---------YLNMFSGHGSSVTCGDFT--PDGKTICTGSDDATLRVW 218 (394)
Q Consensus 161 ~~~l~~~s~d~~i~iw~~~~-------~----~---------~~~~~~~h~~~v~~~~~~--~~~~~l~s~~~dg~i~vw 218 (394)
..+|+.|..||.|.+|.+++ . . +... ..-...+++++++ ...++||.++....|.||
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~-~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFH-LRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeE-eecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 34789999999999997532 0 0 0011 1124577889998 778888988888889888
Q ss_pred cCCCCc-eEEEEcCCCCcccCeEEEEEcCCC-----C-EEEEEeCCCcEEEEEC
Q 016187 219 NPKSGE-NIHVIRGHPYHTEGLTCLTISADS-----T-LALSGSKDGSVHMVNI 265 (394)
Q Consensus 219 d~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~-----~-~l~~g~~dg~i~i~d~ 265 (394)
-..... .......+ .+...|.+++|-++. . .+++++-.|.+.+|++
T Consensus 193 af~l~~~r~~~~~s~-~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSH-QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecccccccccccc-ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 654321 11111111 134457778776543 2 6777888999988877
No 448
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.61 E-value=17 Score=36.78 Aligned_cols=70 Identities=13% Similarity=0.221 Sum_probs=41.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCC----------CcE--E-EEe--------ccCCCCEEEEEECCC---CCeE
Q 016187 238 GLTCLTISADSTLALSGSKDGSVHMVNITT----------GKV--V-SSL--------VSHTDSIECIGFSRS---SPWA 293 (394)
Q Consensus 238 ~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~----------~~~--~-~~~--------~~h~~~i~~v~~~~~---~~~l 293 (394)
.|..+.++|+|++++..|..| |.|..+.. |+. . +++ ..+...|..+.|+|. +..|
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 588899999999998888755 44444421 110 0 111 112335666666665 3566
Q ss_pred EEEeCCCcEEEEeCC
Q 016187 294 ATGSMDQKLIIWDLQ 308 (394)
Q Consensus 294 ~s~s~dg~i~iwd~~ 308 (394)
+.-..|+++++||+.
T Consensus 165 ~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 165 VVLTSDNTLRLYDIS 179 (717)
T ss_pred EEEecCCEEEEEecC
Confidence 666667777777664
No 449
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=90.53 E-value=2.6 Score=34.19 Aligned_cols=31 Identities=19% Similarity=0.460 Sum_probs=24.6
Q ss_pred cCeEEEEECCCC------CeEEEEeCCCcEEEEcCCC
Q 016187 192 SSVTCGDFTPDG------KTICTGSDDATLRVWNPKS 222 (394)
Q Consensus 192 ~~v~~~~~~~~~------~~l~s~~~dg~i~vwd~~~ 222 (394)
..+..++|||.| -.|++.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378899999954 2578889999999998653
No 450
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.46 E-value=11 Score=39.59 Aligned_cols=29 Identities=7% Similarity=0.272 Sum_probs=24.4
Q ss_pred EEEEEEcCCCCEEEEecCCCeEEEEeCCc
Q 016187 152 VEWVSWHPRGHIVLAGSEDSTVWMWNADR 180 (394)
Q Consensus 152 v~~~~~~~~~~~l~~~s~d~~i~iw~~~~ 180 (394)
...++|.|.-++++.++..|.+.++-...
T Consensus 38 ~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 38 PSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CcceeeccccceEEEEEecccEEEecccc
Confidence 34578999999999999999999986543
No 451
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=90.01 E-value=1.8 Score=39.90 Aligned_cols=165 Identities=14% Similarity=0.154 Sum_probs=94.6
Q ss_pred EecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCcccee-ee-ecccC----cCeE-EEEECCCCCeEEEEeCCCcEEE
Q 016187 145 LEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYL-NM-FSGHG----SSVT-CGDFTPDGKTICTGSDDATLRV 217 (394)
Q Consensus 145 ~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~-~~-~~~h~----~~v~-~~~~~~~~~~l~s~~~dg~i~v 217 (394)
+......+..+-..|+++.+..-+. .++.++++.+.... +. ..... ..|+ .+..-..|.-++.++.||.|.-
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQ 294 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQ 294 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceee
Confidence 4455667788889999997766555 67788877543321 11 11101 1111 1112235667888899999977
Q ss_pred E-cCCCCce--EEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEE
Q 016187 218 W-NPKSGEN--IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAA 294 (394)
Q Consensus 218 w-d~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~ 294 (394)
| |++.+.. ++.++........+..+.-..+.+-+++-+..|++..+...+.+.+-.-. --+.+.-+++||.+.+++
T Consensus 295 WFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~~~~~~~~~Sp~~~~Ll 373 (733)
T COG4590 295 WFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-AYQAPQLVAMSPNQAYLL 373 (733)
T ss_pred eeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh-hhcCcceeeeCcccchhe
Confidence 7 5544322 22222212222223333322334566777788888888766555442221 123566789999999988
Q ss_pred EEeCCCcEEEEeCCCCCc
Q 016187 295 TGSMDQKLIIWDLQHSLP 312 (394)
Q Consensus 295 s~s~dg~i~iwd~~~~~~ 312 (394)
+- ..|+++++.+.+..+
T Consensus 374 ~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 374 SE-DQGKIRLAQLENRNP 390 (733)
T ss_pred ee-cCCceEEEEecCCCC
Confidence 65 357799988876543
No 452
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=89.81 E-value=17 Score=33.91 Aligned_cols=154 Identities=11% Similarity=0.134 Sum_probs=0.0
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeee
Q 016187 107 KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNM 186 (394)
Q Consensus 107 ~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~ 186 (394)
.+....+..+++|.+++.+..-..++-||.........-......+..+.|.+++.+++++..-+.++--+-........
T Consensus 238 ~Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S~d~G~~~~~~~ 317 (398)
T PLN00033 238 TGTFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYVSKGTGLTEEDFD 317 (398)
T ss_pred ccceeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEEecCCCCcccccc
Q ss_pred ecccCcC-----eEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEE
Q 016187 187 FSGHGSS-----VTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVH 261 (394)
Q Consensus 187 ~~~h~~~-----v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~ 261 (394)
+..-... +..+.|.+++..+++|. +-+.+.-...++.....+....-...+..+.|.++++.+++|...-.++
T Consensus 318 f~~~~~~~~~~~l~~v~~~~d~~~~a~G~--~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~ 395 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRSKKEAWAAGG--SGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLR 395 (398)
T ss_pred eeecccCCCCcceEEEEEcCCCcEEEEEC--CCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEE
Q ss_pred E
Q 016187 262 M 262 (394)
Q Consensus 262 i 262 (394)
.
T Consensus 396 ~ 396 (398)
T PLN00033 396 Y 396 (398)
T ss_pred e
No 453
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=89.73 E-value=7.6 Score=29.70 Aligned_cols=107 Identities=16% Similarity=0.210 Sum_probs=63.3
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCc--------EEEEeccCCCCEEEEEECC-----CCCeEEEEeCCCcEEEEeCCC
Q 016187 243 TISADSTLALSGSKDGSVHMVNITTGK--------VVSSLVSHTDSIECIGFSR-----SSPWAATGSMDQKLIIWDLQH 309 (394)
Q Consensus 243 ~~~~~~~~l~~g~~dg~i~i~d~~~~~--------~~~~~~~h~~~i~~v~~~~-----~~~~l~s~s~dg~i~iwd~~~ 309 (394)
.|......|++++..|+|.|.+..... .+..+ .-...|++++-.+ ....|+.|+ ...+..||+..
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~ 82 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVEN 82 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEccc
Confidence 445555677788888888888765332 22222 2345666665433 234555555 55789999987
Q ss_pred CCcceeccCCCCEEEEEEeC----CCCEEEEEeCCCeEEEEECCCCe
Q 016187 310 SLPRSTCDHEDGVTCLMWLG----TSKYVVTGCVDGKVRVWDSLSGD 352 (394)
Q Consensus 310 ~~~~~~~~~~~~v~~~~~~~----~~~~l~sg~~dg~i~iwd~~~~~ 352 (394)
........-.+.|+++.+.. ..+.++.| .+..|.-||..-.+
T Consensus 83 N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e 128 (136)
T PF14781_consen 83 NSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNE 128 (136)
T ss_pred CchhhhhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcE
Confidence 65555555567888887743 23344444 45666666654333
No 454
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=89.69 E-value=4.6 Score=40.16 Aligned_cols=103 Identities=13% Similarity=0.088 Sum_probs=69.2
Q ss_pred CCCeEEEEeCCCcEEEEeCCC-------C-------------CcceeccCCCCEEEEEEe--CCCCEEEEEeCCCeEEEE
Q 016187 289 SSPWAATGSMDQKLIIWDLQH-------S-------------LPRSTCDHEDGVTCLMWL--GTSKYVVTGCVDGKVRVW 346 (394)
Q Consensus 289 ~~~~l~s~s~dg~i~iwd~~~-------~-------------~~~~~~~~~~~v~~~~~~--~~~~~l~sg~~dg~i~iw 346 (394)
+...|+.+..||.|.+|.+.. . .+.....-...++.++++ ...++||+++....|.||
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 445788999999999997631 0 011112234467888988 888899999988888887
Q ss_pred ECCC--CeEEE-EeecccCceeEEEEccCC---C---EEEEEeCCCcEEEEecc
Q 016187 347 DSLS--GDCVR-TFSGHRDAIQAISVSAHQ---D---FLVSVSLDGTARVFEIA 391 (394)
Q Consensus 347 d~~~--~~~~~-~~~~h~~~v~~l~~~~~~---~---~l~s~s~dg~i~iw~~~ 391 (394)
-... .+... .-..|..-|.+|.|-++. . .|++++..|.+-+|++.
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 4322 11111 111244558899997643 2 78899999999998873
No 455
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=89.63 E-value=5.9 Score=34.02 Aligned_cols=139 Identities=17% Similarity=0.300 Sum_probs=73.5
Q ss_pred EEEEcCCCeeeEeecCcccCEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCceEEEEec------CCCCEEEEEEcCC
Q 016187 90 FFWRINQGDWASEIQGHKDSVSSLAFSMDGQLLASGGLD---GLVQIWDPSSGNLKCTLEG------PGGGVEWVSWHPR 160 (394)
Q Consensus 90 ~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l~t~s~d---~~i~vwd~~~~~~~~~~~~------~~~~v~~~~~~~~ 160 (394)
.+||+.+.+....--...-.+.+=+|-+||++|.+|+.. ..+++++.......+.... .......+.--|+
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D 128 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD 128 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCC
Confidence 368887766543221122233344567899999988742 4578887654111111111 1112223444568
Q ss_pred CCEEEEecCCC-eEEEEeCCcc--ceee--eecc-----cCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEc
Q 016187 161 GHIVLAGSEDS-TVWMWNADRA--AYLN--MFSG-----HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIR 230 (394)
Q Consensus 161 ~~~l~~~s~d~-~i~iw~~~~~--~~~~--~~~~-----h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 230 (394)
|++++.|+... +...|..... .... .+.. ...----+...|+|+.|+.+..+ -.|||..+++.++.+.
T Consensus 129 G~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~lP 206 (243)
T PF07250_consen 129 GRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTLP 206 (243)
T ss_pred CCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeCC
Confidence 89888887764 3445543211 1111 1110 01111245678999999888764 3467888776555544
No 456
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.63 E-value=0.056 Score=49.79 Aligned_cols=144 Identities=17% Similarity=0.334 Sum_probs=92.7
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEE-EEecCCCeEEEEeCCccceeeeecc
Q 016187 111 SSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIV-LAGSEDSTVWMWNADRAAYLNMFSG 189 (394)
Q Consensus 111 ~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~d~~i~iw~~~~~~~~~~~~~ 189 (394)
....|-|.+.-++.++.+..+..||-. ++...... ..+..-.++|..++..+ +.+-..+.+++|++.+..-.+.-.+
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g 115 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG 115 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence 345677888778888889899999854 33332222 33445567888777654 4556678999999876432222122
Q ss_pred cCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcE
Q 016187 190 HGSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSV 260 (394)
Q Consensus 190 h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i 260 (394)
....-.-+.|++.+..++.+-..|.+++++..+.+.+..... |...++++++.+++..+. ++.|..+
T Consensus 116 g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gk---h~RRgtq~av~lEd~vil-~dcd~~L 182 (615)
T KOG2247|consen 116 GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGK---HQRRGTQIAVTLEDYVIL-CDCDNTL 182 (615)
T ss_pred CcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcc---cccceeEEEecccceeee-cCcHHHH
Confidence 222112267888888888888999999999876654433322 456788888888776543 3444333
No 457
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.37 E-value=2.8 Score=43.89 Aligned_cols=141 Identities=16% Similarity=0.262 Sum_probs=83.2
Q ss_pred cCCCeEEEEeCCccceeeeecccCcCeEEEE--------ECCCCCeEEEEeCCCcEEEEcCC----CCceEEEEcCC--C
Q 016187 168 SEDSTVWMWNADRAAYLNMFSGHGSSVTCGD--------FTPDGKTICTGSDDATLRVWNPK----SGENIHVIRGH--P 233 (394)
Q Consensus 168 s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~--------~~~~~~~l~s~~~dg~i~vwd~~----~~~~~~~~~~~--~ 233 (394)
+-|+.+.+|+.++......+.+-...|..+. |.|.=++++.-+.--.|.++-+. ++......... +
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 3688999999988665666666555554443 33333444444444455555332 22111111110 1
Q ss_pred CcccCeEEEEEcCCCCEEEEEeCCCcEEE--EECCCC---c-E----------------EEEec-cCCCCEEEEEECCCC
Q 016187 234 YHTEGLTCLTISADSTLALSGSKDGSVHM--VNITTG---K-V----------------VSSLV-SHTDSIECIGFSRSS 290 (394)
Q Consensus 234 ~~~~~i~~~~~~~~~~~l~~g~~dg~i~i--~d~~~~---~-~----------------~~~~~-~h~~~i~~v~~~~~~ 290 (394)
.....|+|+....+|+.+++|-. |.|.= |....+ + + +.++. .+.++|..+.+....
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~d-g~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGRD-GNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeecC-CCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence 12345788887778888776654 44432 111111 1 0 11122 467799999999999
Q ss_pred CeEEEEeCCCcEEEEeCCC
Q 016187 291 PWAATGSMDQKLIIWDLQH 309 (394)
Q Consensus 291 ~~l~s~s~dg~i~iwd~~~ 309 (394)
..+.+-+..|+|.+|++..
T Consensus 255 ~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeeeccCceEEEEEccC
Confidence 9999999999999999965
No 458
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.09 E-value=0.068 Score=49.24 Aligned_cols=133 Identities=11% Similarity=0.180 Sum_probs=88.2
Q ss_pred EEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCcE--E
Q 016187 195 TCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLTCLTISADSTLA-LSGSKDGSVHMVNITTGKV--V 271 (394)
Q Consensus 195 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~g~~dg~i~i~d~~~~~~--~ 271 (394)
....|-|.+..++.++.+-.+..||-.. +..- +.. .......++|..++..+ +.+-..+.+.+||+.+... +
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~ag-q~~l--e~n--~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqL 112 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAG-QVIL--ELN--PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQL 112 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhc-ceec--ccC--CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHH
Confidence 3456788877799999999999999543 3221 111 12223345666666544 4566788999999976431 1
Q ss_pred EEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceecc-CCCCEEEEEEeCCCCEE
Q 016187 272 SSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCD-HEDGVTCLMWLGTSKYV 334 (394)
Q Consensus 272 ~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l 334 (394)
..--.|+... +.|++..+.++.+-..|.+.|++..........+ |..+++++++.+.+..+
T Consensus 113 E~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vi 174 (615)
T KOG2247|consen 113 ESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVI 174 (615)
T ss_pred hccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceee
Confidence 1111122222 6789999999999999999999987665544555 88889999998876443
No 459
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.99 E-value=3.5 Score=34.88 Aligned_cols=63 Identities=11% Similarity=0.149 Sum_probs=44.7
Q ss_pred ECCCCCeEEEEeCCCcEEEEeCCCCCccee-------c--------cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 016187 286 FSRSSPWAATGSMDQKLIIWDLQHSLPRST-------C--------DHEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSL 349 (394)
Q Consensus 286 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-------~--------~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~ 349 (394)
+..++.+|++...+|.+.+||+.+...... . .....|..+....+|.-|++-+ +|..+.|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 344677899999999999999976432211 1 2345677888888887776654 6889999754
No 460
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=88.51 E-value=13 Score=30.97 Aligned_cols=138 Identities=10% Similarity=0.214 Sum_probs=79.0
Q ss_pred CEEEEEeCCCcEEEEECC--CCcEEEEeccCCCCEEEEEECCCCCeEEEEeCCC------cEEEE---eCCC--CCcc--
Q 016187 249 TLALSGSKDGSVHMVNIT--TGKVVSSLVSHTDSIECIGFSRSSPWAATGSMDQ------KLIIW---DLQH--SLPR-- 313 (394)
Q Consensus 249 ~~l~~g~~dg~i~i~d~~--~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg------~i~iw---d~~~--~~~~-- 313 (394)
..|+.+.....|.+|++. ..+++.++.- -+.|..+.++..|.|++|--.+. .+++| .... ..+.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 344444667889999998 3345555543 37899999999999999864432 45664 2221 0100
Q ss_pred eecc---------------------CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeE-EE-----Eee----cc-c
Q 016187 314 STCD---------------------HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDC-VR-----TFS----GH-R 361 (394)
Q Consensus 314 ~~~~---------------------~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~-~~-----~~~----~h-~ 361 (394)
...+ -...+.|++..|-..-|+.|+ ++++.+|.+..... .. -|. -| .
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~ 186 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHID 186 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhheec
Confidence 0111 223456777777655566665 66888887644332 11 111 11 2
Q ss_pred Cc-eeEEEEccCCCEEEEEeCCCcEEEEecc
Q 016187 362 DA-IQAISVSAHQDFLVSVSLDGTARVFEIA 391 (394)
Q Consensus 362 ~~-v~~l~~~~~~~~l~s~s~dg~i~iw~~~ 391 (394)
+. ...++|. +.|+|..+ +-.++++++.
T Consensus 187 ~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl~ 214 (215)
T PF14761_consen 187 NFKPTQVAIC--EGYIAVMS-DLEVLVLKLE 214 (215)
T ss_pred CceEEEEEEE--eeEEEEec-CCEEEEEEEe
Confidence 21 3455554 46777655 5568887764
No 461
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.40 E-value=6.4 Score=36.59 Aligned_cols=97 Identities=11% Similarity=0.144 Sum_probs=60.2
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE----EEEeccCCCCEEEEEECCCCCeEEEEeCCCcEEEEeC--CC
Q 016187 236 TEGLTCLTISADSTLALSGSKDGSVHMVNITTGKV----VSSLVSHTDSIECIGFSRSSPWAATGSMDQKLIIWDL--QH 309 (394)
Q Consensus 236 ~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~----~~~~~~h~~~i~~v~~~~~~~~l~s~s~dg~i~iwd~--~~ 309 (394)
.++|.++.|++|.+.+++--.+.+|.+++....+. ..+.+..+..|....|+.+.. +|..+..| +.+|-. ..
T Consensus 66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e-~A~i~~~G-~e~y~v~pek 143 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTE-IAFITDQG-IEFYQVLPEK 143 (657)
T ss_pred CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCee-EEEEecCC-eEEEEEchhh
Confidence 45799999999999999999999999998743221 122233445677777876644 33333333 555543 22
Q ss_pred CCcceeccCCCCEEEEEEeCCCCEE
Q 016187 310 SLPRSTCDHEDGVTCLMWLGTSKYV 334 (394)
Q Consensus 310 ~~~~~~~~~~~~v~~~~~~~~~~~l 334 (394)
...+....|.-.|.--+|.++.+.+
T Consensus 144 rslRlVks~~~nvnWy~yc~et~v~ 168 (657)
T KOG2377|consen 144 RSLRLVKSHNLNVNWYMYCPETAVI 168 (657)
T ss_pred hhhhhhhhcccCccEEEEccccceE
Confidence 3333334455566666666665543
No 462
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.99 E-value=9.8 Score=40.16 Aligned_cols=167 Identities=16% Similarity=0.233 Sum_probs=100.2
Q ss_pred CCCCceeeeeccCCcEEEEEEcCCCCcEEEEecCCCeEEEEEcCCCeeeEeecCcccCEEEEEE--------cCCCCEEE
Q 016187 52 QPDDSTHIFSGHSDEVYSVACSPTDATLVATGGGDDKGFFWRINQGDWASEIQGHKDSVSSLAF--------SMDGQLLA 123 (394)
Q Consensus 52 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~--------s~~g~~l~ 123 (394)
.|+.-...+. |...=..+.+.|.=++.-+| -|..+++|+++++.-...+.+-...|-.|.. -|.=++|+
T Consensus 67 IP~el~eq~~-~~~~~~~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlL 143 (1311)
T KOG1900|consen 67 IPDELLEQFS-NIECKTDMGIFPEIGRAWIT--IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLL 143 (1311)
T ss_pred CCHHHHHHhc-CcceeeeeccchhhcceEEE--eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeE
Confidence 3433333333 44444555666754555554 5899999999987666667666666666653 23334555
Q ss_pred EEeCCCcEEEEeCC----CCceE-----EEEecCCCCEEEEEEcCCCCEEEEecCCCeEEE--EeCCcc---c-e-----
Q 016187 124 SGGLDGLVQIWDPS----SGNLK-----CTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWM--WNADRA---A-Y----- 183 (394)
Q Consensus 124 t~s~d~~i~vwd~~----~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~i--w~~~~~---~-~----- 183 (394)
.-+.--.|.++-+. ++... .++.-..-.|+++....+|+.+++|-. |.++- |....+ + +
T Consensus 144 vvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~d-g~lyEl~Yq~~~gWf~~rc~Kicl 222 (1311)
T KOG1900|consen 144 VVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRD-GNLYELVYQAEDGWFGSRCRKICL 222 (1311)
T ss_pred EecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCcEEEeecC-CCEEEEEEeccCchhhcccccccC
Confidence 44445556665432 22111 122223456888887788887777654 44432 222110 0 0
Q ss_pred -----------eeeec-ccCcCeEEEEECCCCCeEEEEeCCCcEEEEcCCC
Q 016187 184 -----------LNMFS-GHGSSVTCGDFTPDGKTICTGSDDATLRVWNPKS 222 (394)
Q Consensus 184 -----------~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 222 (394)
+-.+. .+..+|..+.+...-+.+.+-+..|+|++||+..
T Consensus 223 t~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 223 TKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred chhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 11223 5677899999988888899999999999999876
No 463
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=87.80 E-value=21 Score=32.27 Aligned_cols=106 Identities=12% Similarity=0.178 Sum_probs=51.0
Q ss_pred CCCEEEEEeCCC-----cEEEEeCCCCceE---EEEecCCCCE-EEEEEcCCCCEEEEecC-----CCeEEEEeCCccce
Q 016187 118 DGQLLASGGLDG-----LVQIWDPSSGNLK---CTLEGPGGGV-EWVSWHPRGHIVLAGSE-----DSTVWMWNADRAAY 183 (394)
Q Consensus 118 ~g~~l~t~s~d~-----~i~vwd~~~~~~~---~~~~~~~~~v-~~~~~~~~~~~l~~~s~-----d~~i~iw~~~~~~~ 183 (394)
++.+++.|+.++ .+..+|+.+.+.. ..+.....+. ...+..-++++++.|+. ...+..||+.+.+-
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 456667777542 4666777665541 1221111111 11111224566666664 24678888776542
Q ss_pred eee--ecccCcCeEEEEECCCCCeEEEEeCCCc----EEEEcCCCCc
Q 016187 184 LNM--FSGHGSSVTCGDFTPDGKTICTGSDDAT----LRVWNPKSGE 224 (394)
Q Consensus 184 ~~~--~~~h~~~v~~~~~~~~~~~l~s~~~dg~----i~vwd~~~~~ 224 (394)
... +.... .........+++..+.|+.++. +..||+.+.+
T Consensus 152 ~~~~~~p~~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 152 FELPDFPGEP-RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred eECCCCCCCC-CCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 221 11111 1111122335667777776543 4578887654
No 464
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=87.65 E-value=17 Score=31.22 Aligned_cols=84 Identities=17% Similarity=0.295 Sum_probs=44.4
Q ss_pred EEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeC-C--CcEEEEcCCC---CceEEEEcCCCCcccCeEEEEEcCC
Q 016187 174 WMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSD-D--ATLRVWNPKS---GENIHVIRGHPYHTEGLTCLTISAD 247 (394)
Q Consensus 174 ~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d--g~i~vwd~~~---~~~~~~~~~~~~~~~~i~~~~~~~~ 247 (394)
.+||+.+.+...........+.+-++.+||++|.+|+. + ..+|+++... ..........-.....-.++..-||
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D 128 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD 128 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCC
Confidence 46887776543322223334445568899999998875 2 3578887644 1111111000000111122344568
Q ss_pred CCEEEEEeCC
Q 016187 248 STLALSGSKD 257 (394)
Q Consensus 248 ~~~l~~g~~d 257 (394)
|+.++.|+..
T Consensus 129 G~vlIvGG~~ 138 (243)
T PF07250_consen 129 GRVLIVGGSN 138 (243)
T ss_pred CCEEEEeCcC
Confidence 8888887766
No 465
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=87.45 E-value=23 Score=32.36 Aligned_cols=41 Identities=15% Similarity=0.297 Sum_probs=21.4
Q ss_pred eEEEEEcCCCeeeEeecCcccCEEEE-EE-cCCCCEEEEEeCC
Q 016187 88 KGFFWRINQGDWASEIQGHKDSVSSL-AF-SMDGQLLASGGLD 128 (394)
Q Consensus 88 ~v~~w~~~~~~~~~~~~~h~~~V~~v-~~-s~~g~~l~t~s~d 128 (394)
.+..||..+.++.............. +. .-+|++.+.|+.+
T Consensus 86 ~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 86 DVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred cEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 46678888777655321111111111 12 3467778888764
No 466
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=87.41 E-value=2.8 Score=41.11 Aligned_cols=71 Identities=20% Similarity=0.290 Sum_probs=43.3
Q ss_pred CCCCEEEEecCCCeEEEEeCCc----ccee-----------eeecc-----------cCcCeEEEEECC----CCCeEEE
Q 016187 159 PRGHIVLAGSEDSTVWMWNADR----AAYL-----------NMFSG-----------HGSSVTCGDFTP----DGKTICT 208 (394)
Q Consensus 159 ~~~~~l~~~s~d~~i~iw~~~~----~~~~-----------~~~~~-----------h~~~v~~~~~~~----~~~~l~s 208 (394)
++...++.+..||.+....... +... +.+.+ .......+++++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3566777888888887776543 1110 00110 123345566666 6788999
Q ss_pred EeCCCcEEEEcCCCCceEEEE
Q 016187 209 GSDDATLRVWNPKSGENIHVI 229 (394)
Q Consensus 209 ~~~dg~i~vwd~~~~~~~~~~ 229 (394)
.+.|+++|+||+.+++++...
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999986654
No 467
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=87.17 E-value=27 Score=32.96 Aligned_cols=31 Identities=19% Similarity=0.274 Sum_probs=24.7
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 016187 320 DGVTCLMWLGTSKYVVTGCVDGKVRVWDSLS 350 (394)
Q Consensus 320 ~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~ 350 (394)
..|..+...+..+.|++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3488888888889999999999999999864
No 468
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=87.14 E-value=23 Score=32.11 Aligned_cols=144 Identities=15% Similarity=0.233 Sum_probs=80.0
Q ss_pred CCEEEEEEcCCCCEEEEecCCCe------EEEEeCCc--c--cee---e--eecccC-c-------CeEEEEECCCCCeE
Q 016187 150 GGVEWVSWHPRGHIVLAGSEDST------VWMWNADR--A--AYL---N--MFSGHG-S-------SVTCGDFTPDGKTI 206 (394)
Q Consensus 150 ~~v~~~~~~~~~~~l~~~s~d~~------i~iw~~~~--~--~~~---~--~~~~h~-~-------~v~~~~~~~~~~~l 206 (394)
+.+..+.+.+++..+++.+.++. ++...+.. . ..+ . .+..-. . ..-++++.++|.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 55677777766666666676666 55554432 0 000 0 011111 1 22367777788888
Q ss_pred EEEeCC------CcEEEEcCCCCceEEEEcCC------------CCcccCeEEEEEcCCCCEEEEEeCC-----C--c--
Q 016187 207 CTGSDD------ATLRVWNPKSGENIHVIRGH------------PYHTEGLTCLTISADSTLALSGSKD-----G--S-- 259 (394)
Q Consensus 207 ~s~~~d------g~i~vwd~~~~~~~~~~~~~------------~~~~~~i~~~~~~~~~~~l~~g~~d-----g--~-- 259 (394)
++.-.+ ..|+.++.. |+....+... .....+.-.++++|+|+.++++.+. + .
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~ 178 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP 178 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence 887777 788888866 5544433211 1134568899999999966654332 2 1
Q ss_pred -----EEE--EECCC-CcEEEEe----cc-----CCCCEEEEEECCCCCeEE
Q 016187 260 -----VHM--VNITT-GKVVSSL----VS-----HTDSIECIGFSRSSPWAA 294 (394)
Q Consensus 260 -----i~i--~d~~~-~~~~~~~----~~-----h~~~i~~v~~~~~~~~l~ 294 (394)
+++ +|..+ ++....+ .. ....|..+.+-+++.+|+
T Consensus 179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLv 230 (326)
T PF13449_consen 179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLV 230 (326)
T ss_pred ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEE
Confidence 344 45544 3222222 11 234567777777777554
No 469
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=87.04 E-value=4.2 Score=23.54 Aligned_cols=40 Identities=13% Similarity=0.071 Sum_probs=27.8
Q ss_pred CCCCEEEEEe-CCCeEEEEECCCCeEEEEeecccCceeEEEE
Q 016187 329 GTSKYVVTGC-VDGKVRVWDSLSGDCVRTFSGHRDAIQAISV 369 (394)
Q Consensus 329 ~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~ 369 (394)
|++++|+++. .+++|.++|..+++.+.++.....+ ..++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P-~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYP-FGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCC-ceEEe
Confidence 4666666655 5789999999999988887753322 35544
No 470
>PRK05560 DNA gyrase subunit A; Validated
Probab=86.94 E-value=41 Score=34.80 Aligned_cols=191 Identities=10% Similarity=0.100 Sum_probs=103.9
Q ss_pred CCCCCeEEEEeCCCcEEEEcCCCCce-------EEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE---CCC--
Q 016187 200 TPDGKTICTGSDDATLRVWNPKSGEN-------IHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVN---ITT-- 267 (394)
Q Consensus 200 ~~~~~~l~s~~~dg~i~vwd~~~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d---~~~-- 267 (394)
.++...++.-+.+|.|+--....... ...++.. ....+..+........++..+..|.+.... +..
T Consensus 495 I~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klK--e~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~ 572 (805)
T PRK05560 495 IPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTK--EDDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEAS 572 (805)
T ss_pred cCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccC--CCCeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCC
Confidence 34567788889999998776543211 0000000 122344444444555556666677766554 322
Q ss_pred ----CcEEE---EeccCCCCEEEEEECC--CCCeEEEEeCCCcEEEEeCCCCCcc-------eeccCCCCEEEEEEeCCC
Q 016187 268 ----GKVVS---SLVSHTDSIECIGFSR--SSPWAATGSMDQKLIIWDLQHSLPR-------STCDHEDGVTCLMWLGTS 331 (394)
Q Consensus 268 ----~~~~~---~~~~h~~~i~~v~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~-------~~~~~~~~v~~~~~~~~~ 331 (394)
|..+. .+.....-+.++.+.. +..+++..+..|.++--++...... ....-.+.+..+......
T Consensus 573 ~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~D~lv~v~~~~~~ 652 (805)
T PRK05560 573 RTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEGDELIGVRLTDGD 652 (805)
T ss_pred cCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCCCCEEEEEEEeCCC
Confidence 23321 2222233355555552 5678999999999987765422110 011123344444444555
Q ss_pred CEEEEEeCCCeEEEEECCC---------CeEEEEeecccCceeE-EEEccCCCEEEEEeCCCcEEEEeccCC
Q 016187 332 KYVVTGCVDGKVRVWDSLS---------GDCVRTFSGHRDAIQA-ISVSAHQDFLVSVSLDGTARVFEIADF 393 (394)
Q Consensus 332 ~~l~sg~~dg~i~iwd~~~---------~~~~~~~~~h~~~v~~-l~~~~~~~~l~s~s~dg~i~iw~~~~~ 393 (394)
..|+..+..|.+..+.+.. |.....+.. ...|.. +.+.++..+++..+..|.++...+.+|
T Consensus 653 d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~-~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~ 723 (805)
T PRK05560 653 DDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLRE-GDEVVSMDVVREDSQEILTVTENGYGKRTPVSEY 723 (805)
T ss_pred CEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCC-CCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHh
Confidence 6777788888887776421 222223332 233433 444444447888999999988877665
No 471
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.78 E-value=30 Score=36.66 Aligned_cols=29 Identities=34% Similarity=0.493 Sum_probs=25.0
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 016187 109 SVSSLAFSMDGQLLASGGLDGLVQIWDPS 137 (394)
Q Consensus 109 ~V~~v~~s~~g~~l~t~s~d~~i~vwd~~ 137 (394)
....++|+|.-.++|.+...|.|+++-..
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEeccc
Confidence 34578999999999999999999999654
No 472
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=86.47 E-value=3.6 Score=40.39 Aligned_cols=37 Identities=22% Similarity=0.470 Sum_probs=28.9
Q ss_pred EEEEEEeC----CCCEEEEEeCCCeEEEEECCCCeEEEEee
Q 016187 322 VTCLMWLG----TSKYVVTGCVDGKVRVWDSLSGDCVRTFS 358 (394)
Q Consensus 322 v~~~~~~~----~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 358 (394)
+..++... +..+|++-+.|+++|+||+.+++++..+.
T Consensus 217 ~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 217 AASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred cceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence 44555555 67899999999999999999999977653
No 473
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=85.99 E-value=4.6 Score=23.07 Aligned_cols=29 Identities=24% Similarity=0.373 Sum_probs=18.6
Q ss_pred cccCEEEEEEcCCCCEEE-EEeCC--CcEEEE
Q 016187 106 HKDSVSSLAFSMDGQLLA-SGGLD--GLVQIW 134 (394)
Q Consensus 106 h~~~V~~v~~s~~g~~l~-t~s~d--~~i~vw 134 (394)
....-....|||||++|+ ++..+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344567889999998876 44455 555555
No 474
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=85.77 E-value=27 Score=31.54 Aligned_cols=65 Identities=15% Similarity=0.239 Sum_probs=35.7
Q ss_pred CCCEEEEEeC-----CCcEEEEeCCCCceEEEEecCC-CCEEEEEEcCCCCEEEEecCCC----eEEEEeCCccc
Q 016187 118 DGQLLASGGL-----DGLVQIWDPSSGNLKCTLEGPG-GGVEWVSWHPRGHIVLAGSEDS----TVWMWNADRAA 182 (394)
Q Consensus 118 ~g~~l~t~s~-----d~~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~s~d~----~i~iw~~~~~~ 182 (394)
++.+.+.|+. ...+..||+.+.+....-..+. ......+...++++++.|+.++ .+.+||..+.+
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 4666666664 2357888988776643211111 1112222234567777777653 35678877654
No 475
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=85.73 E-value=4.9 Score=23.25 Aligned_cols=32 Identities=16% Similarity=0.149 Sum_probs=24.5
Q ss_pred CCCCcEEEEecCCCeEEEEEcCCCeeeEeecC
Q 016187 74 PTDATLVATGGGDDKGFFWRINQGDWASEIQG 105 (394)
Q Consensus 74 p~~~~~lasg~~d~~v~~w~~~~~~~~~~~~~ 105 (394)
|++.+++++.-.++++.++|..+++.+..+.-
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 45566777777889999999988877766654
No 476
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=85.41 E-value=41 Score=33.43 Aligned_cols=164 Identities=16% Similarity=0.182 Sum_probs=85.9
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceEE--EEec-CCCCEEEEEEcCC------CCEEEEecC-C---CeE
Q 016187 107 KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLKC--TLEG-PGGGVEWVSWHPR------GHIVLAGSE-D---STV 173 (394)
Q Consensus 107 ~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~--~~~~-~~~~v~~~~~~~~------~~~l~~~s~-d---~~i 173 (394)
.+.|-.+.|.++++.+++.-.+|.|.+||...+.... .+.. +...+..-+|-++ ..++++.+. + -..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 5678899999999999999999999999983322211 1111 1111211122221 234444333 2 245
Q ss_pred EEEeC--Cccceeeeec---ccCcCeEEEEECC-CCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCc-c--cCeEEEEE
Q 016187 174 WMWNA--DRAAYLNMFS---GHGSSVTCGDFTP-DGKTICTGSDDATLRVWNPKSGENIHVIRGHPYH-T--EGLTCLTI 244 (394)
Q Consensus 174 ~iw~~--~~~~~~~~~~---~h~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-~--~~i~~~~~ 244 (394)
+++.+ ...+. ..+. .+........|.. +|+...- .+++|.+|.+..-+..+.+.....- . ..+.++..
T Consensus 209 kL~~l~~~~~~~-~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~ 285 (670)
T PF10395_consen 209 KLISLSNESSSI-FELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKP 285 (670)
T ss_pred EEEEeccCCcce-EEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeec
Confidence 66666 22221 1111 1111222223332 4443322 6778999998777665555433111 1 23444443
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 016187 245 SADSTLALSGSKDGSVHMVNITTGKVVSSLV 275 (394)
Q Consensus 245 ~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~ 275 (394)
-...+.+++ .+.+|++.|+.-..++.++.
T Consensus 286 ~s~nRvLLs--~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 286 PSPNRVLLS--VNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred CCCCeEEEE--cCCEEEEEeehhhhhhhhhh
Confidence 333445443 46789999987665555443
No 477
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=85.12 E-value=5 Score=22.92 Aligned_cols=33 Identities=9% Similarity=0.175 Sum_probs=21.4
Q ss_pred EeecccCceeEEEEccCCCEEEEEe-CC--CcEEEE
Q 016187 356 TFSGHRDAIQAISVSAHQDFLVSVS-LD--GTARVF 388 (394)
Q Consensus 356 ~~~~h~~~v~~l~~~~~~~~l~s~s-~d--g~i~iw 388 (394)
.+....+.....+|+|||++|+-++ .+ |.-.||
T Consensus 3 ~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 3 QLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp EES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CcccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3444455667889999999887554 45 666666
No 478
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=84.70 E-value=12 Score=34.91 Aligned_cols=236 Identities=14% Similarity=0.143 Sum_probs=120.4
Q ss_pred CEEEEEEcCCCCEEEEecCCCeEEEEeCCccc----eeeeecccCcCeEEEEECCCC--------CeEEEEeCCCcEEEE
Q 016187 151 GVEWVSWHPRGHIVLAGSEDSTVWMWNADRAA----YLNMFSGHGSSVTCGDFTPDG--------KTICTGSDDATLRVW 218 (394)
Q Consensus 151 ~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~----~~~~~~~h~~~v~~~~~~~~~--------~~l~s~~~dg~i~vw 218 (394)
+|.+..--|-...++.|..+|.+.+....-.. .-..+.....+ ++..+.| ++.+....+....++
T Consensus 117 pv~wa~~~~gqp~~alglsngqv~v~qp~~s~t~p~pg~~Fp~g~~p---~aLd~qgr~leh~~~~lalA~~~~~qf~~~ 193 (733)
T COG4590 117 PVLWAQTPPGQPWFALGLSNGQVAVVQPQLSHTMPTPGREFPPGLEP---LALDEQGRLLEHPLQQLALALTAEAQFATY 193 (733)
T ss_pred CcccccCCCCCceEEEeccCCeEEEEeccccccCCCCCccCCCCCCc---cccCcccCcccchHHHhhhccchhhHHHHh
Confidence 44444333445688889999999887643111 00111111111 1222222 233444555555555
Q ss_pred cCCCCceE---------EEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE-EEeccC-CC----CEE-
Q 016187 219 NPKSGENI---------HVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNITTGKVV-SSLVSH-TD----SIE- 282 (394)
Q Consensus 219 d~~~~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~-~~~~~h-~~----~i~- 282 (394)
+......+ ..++.-+.....+..+-..|+++.+..-+. ..+.++++.+...- .++... .+ .|+
T Consensus 194 ~~t~~~~~L~g~~t~q~e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte 272 (733)
T COG4590 194 DNTQQIQILRGDRTTQQEIIRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTE 272 (733)
T ss_pred hhhhhhhhhhcccCchhhhhhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHH
Confidence 54322111 001111122345667788999998877655 67888887654321 112111 11 111
Q ss_pred EEEECCCCCeEEEEeCCCcEEEE-eCCCC-Ccceec----c-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEE
Q 016187 283 CIGFSRSSPWAATGSMDQKLIIW-DLQHS-LPRSTC----D-HEDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVR 355 (394)
Q Consensus 283 ~v~~~~~~~~l~s~s~dg~i~iw-d~~~~-~~~~~~----~-~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~ 355 (394)
++..-..+.-++.++.||.|.-| |.+.. .++... . ....+..+.--.+.+-+++-...|++.++.....+.+-
T Consensus 273 ~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL 352 (733)
T COG4590 273 QLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL 352 (733)
T ss_pred HHHHHhCceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCccee
Confidence 11112234457788889988877 44332 111110 0 11223323222234556677888999888765555432
Q ss_pred EeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccC
Q 016187 356 TFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIAD 392 (394)
Q Consensus 356 ~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~ 392 (394)
+..--+.+..+++||.+.++++- +.|.|+++.+++
T Consensus 353 -~~~~~~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~N 387 (733)
T COG4590 353 -FERAYQAPQLVAMSPNQAYLLSE-DQGKIRLAQLEN 387 (733)
T ss_pred -hhhhhcCcceeeeCcccchheee-cCCceEEEEecC
Confidence 22222356789999999998854 467799998875
No 479
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.16 E-value=21 Score=33.96 Aligned_cols=72 Identities=17% Similarity=0.134 Sum_probs=40.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEC---------CCCcEEEE---e------c--cCCCCEEEEEECCCC---CeEE
Q 016187 238 GLTCLTISADSTLALSGSKDGSVHMVNI---------TTGKVVSS---L------V--SHTDSIECIGFSRSS---PWAA 294 (394)
Q Consensus 238 ~i~~~~~~~~~~~l~~g~~dg~i~i~d~---------~~~~~~~~---~------~--~h~~~i~~v~~~~~~---~~l~ 294 (394)
.|..+..++.|..++-.+.+|.+.+.=. ..|+..-. + . ...-.+..++|+|+. ..|+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 3566788999999998888886544321 12221110 0 0 011124456666664 4566
Q ss_pred EEeCCCcEEEEeCCC
Q 016187 295 TGSMDQKLIIWDLQH 309 (394)
Q Consensus 295 s~s~dg~i~iwd~~~ 309 (394)
.-+.|.++++||+..
T Consensus 185 iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSE 199 (741)
T ss_pred EEecCcEEEEEecCC
Confidence 666677777777643
No 480
>PLN02193 nitrile-specifier protein
Probab=84.09 E-value=41 Score=32.30 Aligned_cols=143 Identities=12% Similarity=0.154 Sum_probs=70.8
Q ss_pred CcEEEEecCC-----CeEEEEEcCCCeeeEeecC----cccCEEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCceE
Q 016187 77 ATLVATGGGD-----DKGFFWRINQGDWASEIQG----HKDSVSSLAFSMDGQLLASGGLDG-----LVQIWDPSSGNLK 142 (394)
Q Consensus 77 ~~~lasg~~d-----~~v~~w~~~~~~~~~~~~~----h~~~V~~v~~s~~g~~l~t~s~d~-----~i~vwd~~~~~~~ 142 (394)
..+.+.||.+ ..+..+|+.+.++...-.. ....-.+++. -++++.+.|+.++ .+..||+.+.+..
T Consensus 229 ~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 229 STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 4455666654 3467788887776542211 0011112222 2455666666543 4677888776654
Q ss_pred EEEe-----cCCCCEEEEEEcCCCCEEEEecCC----CeEEEEeCCccceeeeecc-----cCcCeEEEEECCCCCeEEE
Q 016187 143 CTLE-----GPGGGVEWVSWHPRGHIVLAGSED----STVWMWNADRAAYLNMFSG-----HGSSVTCGDFTPDGKTICT 208 (394)
Q Consensus 143 ~~~~-----~~~~~v~~~~~~~~~~~l~~~s~d----~~i~iw~~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~l~s 208 (394)
..-. ....... +. ..++++++.++.+ ..+.+||+.+.+-.+.-.. ......++ .-+++.++.
T Consensus 308 ~~~~~~~~~~~R~~~~-~~-~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~--~~~~~iyv~ 383 (470)
T PLN02193 308 HCSTPGDSFSIRGGAG-LE-VVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA--AVGKHIVIF 383 (470)
T ss_pred eCCCCCCCCCCCCCcE-EE-EECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEE--EECCEEEEE
Confidence 2211 0011111 11 2256667766654 4688899876543222110 11111122 225667777
Q ss_pred EeCC--------------CcEEEEcCCCCc
Q 016187 209 GSDD--------------ATLRVWNPKSGE 224 (394)
Q Consensus 209 ~~~d--------------g~i~vwd~~~~~ 224 (394)
|+.. ..+.++|+.+.+
T Consensus 384 GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~ 413 (470)
T PLN02193 384 GGEIAMDPLAHVGPGQLTDGTFALDTETLQ 413 (470)
T ss_pred CCccCCccccccCccceeccEEEEEcCcCE
Confidence 7753 247788887654
No 481
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=83.98 E-value=31 Score=30.82 Aligned_cols=162 Identities=18% Similarity=0.253 Sum_probs=0.0
Q ss_pred EeCCCcEEEEcCCCCceEEEEcCCC---------CcccCeEEEEEcCCCCEEEEEeC------------------CCcEE
Q 016187 209 GSDDATLRVWNPKSGENIHVIRGHP---------YHTEGLTCLTISADSTLALSGSK------------------DGSVH 261 (394)
Q Consensus 209 ~~~dg~i~vwd~~~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~l~~g~~------------------dg~i~ 261 (394)
|-..|.+.+.| ...+.+..+.... ......-.+.+.++|+.+++... |+.+.
T Consensus 21 g~g~G~~~~lD-~~y~~i~~v~~~~~~~~~~~~~~~~~d~He~~it~~gt~lvt~~~~~~~dls~~gg~~~g~i~d~~~~ 99 (299)
T PF14269_consen 21 GYGYGSYVILD-SSYEVIWNVSAGNDFGTPDGEPGSYADHHEFEITPDGTALVTAYNPTPADLSPVGGPEDGWILDDVFQ 99 (299)
T ss_pred ccccceEEEEC-CCCcEEEEEECCCcccccccccCccCCccceEEcCCCcEEEEEccceeccccccCcCCCccEecceeE
Q ss_pred EEECCCCcEEEEeccCCCCEEEEEECCCCCe----EEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEE
Q 016187 262 MVNITTGKVVSSLVSHTDSIECIGFSRSSPW----AATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTG 337 (394)
Q Consensus 262 i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~----l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg 337 (394)
-.|+.+++++.+...-. .+.+.... -..+.....-..||.-+ ++++...++|.+|++.
T Consensus 100 EiDi~TgevlfeW~a~D------H~~~~~~~~~~~~~~~~g~~~~~~~D~~H------------iNsV~~~~~G~yLiS~ 161 (299)
T PF14269_consen 100 EIDIETGEVLFEWSASD------HVDPNDSYDSQDPLPGSGGSSSFPWDYFH------------INSVDKDDDGDYLISS 161 (299)
T ss_pred EeccCCCCEEEEEEhhh------eecccccccccccccCCCcCCCCCCCccE------------eeeeeecCCccEEEEe
Q ss_pred eCCCeEEEEECCCCeEEEEeecccCceeE-----EEEccCCCEEEEEeCCCcEEEEe
Q 016187 338 CVDGKVRVWDSLSGDCVRTFSGHRDAIQA-----ISVSAHQDFLVSVSLDGTARVFE 389 (394)
Q Consensus 338 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~-----l~~~~~~~~l~s~s~dg~i~iw~ 389 (394)
-.-..|.+.|..+|+.+-.+.|-.+.=.. +++-.|.+++-....+++|.+||
T Consensus 162 R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFD 218 (299)
T PF14269_consen 162 RNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFD 218 (299)
T ss_pred cccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEc
No 482
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=83.91 E-value=33 Score=31.07 Aligned_cols=144 Identities=16% Similarity=0.293 Sum_probs=80.9
Q ss_pred cCeEEEEECCCCCeEEEEeCCCc------EEEEcCCCC----ceEEE-----Ec---CCCCc--ccCeEEEEEcCCCCEE
Q 016187 192 SSVTCGDFTPDGKTICTGSDDAT------LRVWNPKSG----ENIHV-----IR---GHPYH--TEGLTCLTISADSTLA 251 (394)
Q Consensus 192 ~~v~~~~~~~~~~~l~s~~~dg~------i~vwd~~~~----~~~~~-----~~---~~~~~--~~~i~~~~~~~~~~~l 251 (394)
+.++.+.+.|++..+++.+.+|. +...++... ..+.. +. +.++. .-..-.+++.+++.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 34566777766666666677776 544444320 11111 11 11110 0123356677888888
Q ss_pred EEEeCC------CcEEEEECCCCcEEEEec---------------cCCCCEEEEEECCCCCeEEEEeC-----CC-----
Q 016187 252 LSGSKD------GSVHMVNITTGKVVSSLV---------------SHTDSIECIGFSRSSPWAATGSM-----DQ----- 300 (394)
Q Consensus 252 ~~g~~d------g~i~i~d~~~~~~~~~~~---------------~h~~~i~~v~~~~~~~~l~s~s~-----dg----- 300 (394)
++.-.+ ..|..++.. |+.+..+. ......++++++|++..|.++.. |+
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~ 178 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP 178 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence 887777 788888876 66544431 12346889999999995554432 22
Q ss_pred ----cEEE--EeCCC-CCcc--e--ecc------CCCCEEEEEEeCCCCEEEE
Q 016187 301 ----KLII--WDLQH-SLPR--S--TCD------HEDGVTCLMWLGTSKYVVT 336 (394)
Q Consensus 301 ----~i~i--wd~~~-~~~~--~--~~~------~~~~v~~~~~~~~~~~l~s 336 (394)
.++| ||... .... . ... ....++.+.+.+++++|+.
T Consensus 179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 1445 44443 1111 1 111 3456888999999987764
No 483
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=83.86 E-value=42 Score=32.28 Aligned_cols=146 Identities=14% Similarity=0.195 Sum_probs=68.7
Q ss_pred CCCcEEEEeCCCCceEEEEecCCCCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcC---eEEEEECCCC
Q 016187 127 LDGLVQIWDPSSGNLKCTLEGPGGGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSS---VTCGDFTPDG 203 (394)
Q Consensus 127 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~---v~~~~~~~~~ 203 (394)
......+.|. .|.+...+.........+...++|++++... ..++.+|.... .+..+..-... =..+...|+|
T Consensus 126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~-v~~~~~l~~~~~~~HHD~~~l~nG 201 (477)
T PF05935_consen 126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGK-VIWEYDLPGGYYDFHHDIDELPNG 201 (477)
T ss_dssp BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS
T ss_pred CCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCC-EEEeeecCCcccccccccEECCCC
Confidence 3455666664 3555544433222211155678888776554 77888887533 22222111100 1235677899
Q ss_pred CeEEEEeC-------------CCcEEEEcCCCCceEEEEcCCC----Cc-------------c-------cCeEEEEEcC
Q 016187 204 KTICTGSD-------------DATLRVWNPKSGENIHVIRGHP----YH-------------T-------EGLTCLTISA 246 (394)
Q Consensus 204 ~~l~s~~~-------------dg~i~vwd~~~~~~~~~~~~~~----~~-------------~-------~~i~~~~~~~ 246 (394)
++|+.+.. .-.|..+| .+|+.+..+.... .. . -.++++.+.+
T Consensus 202 n~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~ 280 (477)
T PF05935_consen 202 NLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDP 280 (477)
T ss_dssp -EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEET
T ss_pred CEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeC
Confidence 99887771 11244555 5666554432100 00 0 1378889988
Q ss_pred -CCCEEEEEeCCCcEEEEECCCCcEEEEeccC
Q 016187 247 -DSTLALSGSKDGSVHMVNITTGKVVSSLVSH 277 (394)
Q Consensus 247 -~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h 277 (394)
++.+++++-.-..|..+|.+++++.-.+-.+
T Consensus 281 ~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 281 SDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP 312 (477)
T ss_dssp TTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred CCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence 5555555555558888998888776665444
No 484
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=83.68 E-value=40 Score=31.82 Aligned_cols=30 Identities=13% Similarity=0.313 Sum_probs=25.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 016187 238 GLTCLTISADSTLALSGSKDGSVHMVNITT 267 (394)
Q Consensus 238 ~i~~~~~~~~~~~l~~g~~dg~i~i~d~~~ 267 (394)
.|..+...+..+.+++...+|.|.+|++..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 488899999889999999999999999974
No 485
>PLN02153 epithiospecifier protein
Probab=83.59 E-value=35 Score=31.08 Aligned_cols=66 Identities=17% Similarity=0.357 Sum_probs=35.1
Q ss_pred CCcEEEEecCC-----CeEEEEEcCCCeeeEe--ecC---cccC-EEEEEEcCCCCEEEEEeCC-----------CcEEE
Q 016187 76 DATLVATGGGD-----DKGFFWRINQGDWASE--IQG---HKDS-VSSLAFSMDGQLLASGGLD-----------GLVQI 133 (394)
Q Consensus 76 ~~~~lasg~~d-----~~v~~w~~~~~~~~~~--~~~---h~~~-V~~v~~s~~g~~l~t~s~d-----------~~i~v 133 (394)
+..+++-||.+ ..+.++|..+.++... +.. .... -.+++ ..++++++.|+.+ ..+.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~v~~ 163 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMA-SDENHVYVFGGVSKGGLMKTPERFRTIEA 163 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEE-EECCEEEEECCccCCCccCCCcccceEEE
Confidence 34566666643 2467788887766532 110 0111 11222 2345666677654 24778
Q ss_pred EeCCCCceE
Q 016187 134 WDPSSGNLK 142 (394)
Q Consensus 134 wd~~~~~~~ 142 (394)
||+.+.+..
T Consensus 164 yd~~~~~W~ 172 (341)
T PLN02153 164 YNIADGKWV 172 (341)
T ss_pred EECCCCeEe
Confidence 888877654
No 486
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=83.51 E-value=14 Score=29.81 Aligned_cols=29 Identities=10% Similarity=0.271 Sum_probs=24.5
Q ss_pred CEEEEEEeCCC------CEEEEEeCCCeEEEEECC
Q 016187 321 GVTCLMWLGTS------KYVVTGCVDGKVRVWDSL 349 (394)
Q Consensus 321 ~v~~~~~~~~~------~~l~sg~~dg~i~iwd~~ 349 (394)
.+..++|+|.| .+|++-+.+|.|.||...
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 68899999964 478889999999999754
No 487
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=83.34 E-value=38 Score=31.36 Aligned_cols=41 Identities=10% Similarity=0.208 Sum_probs=20.4
Q ss_pred eEEEEEcCCCeeeEeecCcccCE--EEEEEcCCCCEEEEEeCC
Q 016187 88 KGFFWRINQGDWASEIQGHKDSV--SSLAFSMDGQLLASGGLD 128 (394)
Q Consensus 88 ~v~~w~~~~~~~~~~~~~h~~~V--~~v~~s~~g~~l~t~s~d 128 (394)
.+..||..+.++...-....... .++....++.+.+.|+.+
T Consensus 107 ~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 107 DVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred cEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 46677877777655321101111 111211467777777754
No 488
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=82.86 E-value=48 Score=32.16 Aligned_cols=243 Identities=15% Similarity=0.204 Sum_probs=106.9
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCc--eEEEEecC-CCCEEEEEEcCCC-CEEEEecC--CCeEEEEeCCccceeeeecc
Q 016187 116 SMDGQLLASGGLDGLVQIWDPSSGN--LKCTLEGP-GGGVEWVSWHPRG-HIVLAGSE--DSTVWMWNADRAAYLNMFSG 189 (394)
Q Consensus 116 s~~g~~l~t~s~d~~i~vwd~~~~~--~~~~~~~~-~~~v~~~~~~~~~-~~l~~~s~--d~~i~iw~~~~~~~~~~~~~ 189 (394)
..++..++.+..+|.+..-.+.... .....-+. .....++.+..++ .+++.||. |+.+..|....-..+..+.
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~- 297 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP- 297 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-
Confidence 4567788889999998887654322 11222122 3344556665555 36666665 4555556544334444443
Q ss_pred cCcCeEEEEECCC----CC------eEEEEe---CCCcEEEEcCCCCceEE--EEcCCCCc-ccCeEEEEEcC-CCCEEE
Q 016187 190 HGSSVTCGDFTPD----GK------TICTGS---DDATLRVWNPKSGENIH--VIRGHPYH-TEGLTCLTISA-DSTLAL 252 (394)
Q Consensus 190 h~~~v~~~~~~~~----~~------~l~s~~---~dg~i~vwd~~~~~~~~--~~~~~~~~-~~~i~~~~~~~-~~~~l~ 252 (394)
.-++|..+.+.+. .. .|++++ .+|++++.. .|-... ........ ...+..+.... +..+++
T Consensus 298 N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr--~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv 375 (504)
T PF10433_consen 298 NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR--NGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLV 375 (504)
T ss_dssp ---SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE--ESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEE
T ss_pred CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe--ccCCceeeeeeccCCCCceEEEEeeecCCCceEEE
Confidence 3457777776421 11 555554 467888874 232222 11111100 12233333222 145666
Q ss_pred EEeCCCcEEEEECC---CCcEEEEeccCCCCEEEEEECCCCCeEEEEeC---------CCcEEEEeCCCCCcceec--cC
Q 016187 253 SGSKDGSVHMVNIT---TGKVVSSLVSHTDSIECIGFSRSSPWAATGSM---------DQKLIIWDLQHSLPRSTC--DH 318 (394)
Q Consensus 253 ~g~~dg~i~i~d~~---~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s~---------dg~i~iwd~~~~~~~~~~--~~ 318 (394)
.+..+.+ +++.+. ....+..+.. . .|..+.+.|+.+.. ...|++.+.......... ..
T Consensus 376 ~S~~~~T-~vl~~~~~d~~e~~~e~~~------~-~f~~~~~Tl~~~~~~~~~ivQVt~~~i~l~~~~~~~~~~~w~~~~ 447 (504)
T PF10433_consen 376 LSFPNET-RVLQISEGDDGEEVEEVEE------D-GFDTDEPTLAAGNVGDGRIVQVTPKGIRLIDLEDGKLTQEWKPPA 447 (504)
T ss_dssp EEESSEE-EEEEES----SSEEEEE----------TS-SSS-EEEEEEETTTEEEEEESSEEEEEESSSTSEEEEEE-TT
T ss_pred EEcCCce-EEEEEecccCCcchhhhhh------c-cCCCCCCCeEEEEcCCCeEEEEecCeEEEEECCCCeEEEEEeCCC
Confidence 5555443 333332 2222222110 0 22233333333322 223666665443322221 12
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEee-c----ccCceeEEEEcc
Q 016187 319 EDGVTCLMWLGTSKYVVTGCVDGKVRVWDSLSGDCVRTFS-G----HRDAIQAISVSA 371 (394)
Q Consensus 319 ~~~v~~~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~----h~~~v~~l~~~~ 371 (394)
...|.+.+. .+.+++.+..++.+.++.+.......... . -...|.++..+|
T Consensus 448 ~~~I~~a~~--~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 448 GSIIVAASI--NDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp S---SEEEE--SSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred CCeEEEEEE--CCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 223433333 44677777788999999887666543322 1 356788887765
No 489
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=82.13 E-value=43 Score=31.05 Aligned_cols=54 Identities=24% Similarity=0.372 Sum_probs=27.3
Q ss_pred CCCCEEEEEeCCC-----------cEEEEeCCCCceEEEEec-CCCCEEEEEEc-CCCCEEEEecCC
Q 016187 117 MDGQLLASGGLDG-----------LVQIWDPSSGNLKCTLEG-PGGGVEWVSWH-PRGHIVLAGSED 170 (394)
Q Consensus 117 ~~g~~l~t~s~d~-----------~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~-~~~~~l~~~s~d 170 (394)
-++.+.+.|+... .+..||+.+......-.. +.......+.. .++++++.|+.+
T Consensus 83 ~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 83 IDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred ECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 3566666776532 467788877665432111 11111111222 467777777754
No 490
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=81.62 E-value=52 Score=31.70 Aligned_cols=115 Identities=17% Similarity=0.259 Sum_probs=55.5
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCceEEEEecCCCC---EEEEEEcCCCCEEEEecC-------------CCeEEEE
Q 016187 113 LAFSMDGQLLASGGLDGLVQIWDPSSGNLKCTLEGPGGG---VEWVSWHPRGHIVLAGSE-------------DSTVWMW 176 (394)
Q Consensus 113 v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~s~-------------d~~i~iw 176 (394)
+.+-++|.+++..+ ..++..|.. |+.......+.+. =..+..-|+|++|+.+.. .-.|..+
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 66678998887555 778888875 6655444332211 123566788887776661 1123333
Q ss_pred eCCccceeeeec-------------------------ccC--cCeEEEEECC-CCCeEEEEeCCCcEEEEcCCCCceEEE
Q 016187 177 NADRAAYLNMFS-------------------------GHG--SSVTCGDFTP-DGKTICTGSDDATLRVWNPKSGENIHV 228 (394)
Q Consensus 177 ~~~~~~~~~~~~-------------------------~h~--~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~ 228 (394)
| .+++.+..+. ... .-+.++.+.+ ++.+++|+-.-..|...|.++++....
T Consensus 230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wi 308 (477)
T PF05935_consen 230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWI 308 (477)
T ss_dssp --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEE
T ss_pred C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEE
Confidence 3 3333222110 000 1367888888 555555555555788888888877666
Q ss_pred EcC
Q 016187 229 IRG 231 (394)
Q Consensus 229 ~~~ 231 (394)
+..
T Consensus 309 lg~ 311 (477)
T PF05935_consen 309 LGP 311 (477)
T ss_dssp ES-
T ss_pred eCC
Confidence 654
No 491
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=81.44 E-value=12 Score=31.34 Aligned_cols=48 Identities=23% Similarity=0.275 Sum_probs=36.9
Q ss_pred CEEEEEeCCCeEEEEECC--CCeEEEEeecccCceeEEEEccCCCEEEEEe
Q 016187 332 KYVVTGCVDGKVRVWDSL--SGDCVRTFSGHRDAIQAISVSAHQDFLVSVS 380 (394)
Q Consensus 332 ~~l~sg~~dg~i~iwd~~--~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s 380 (394)
..|+.+...+.|.+|++. ..+.+.+|.-- +.|..+.++..|+||+|-=
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE 78 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLE 78 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEE
Confidence 455555778889999987 34456677654 6899999999999999863
No 492
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=80.92 E-value=31 Score=28.73 Aligned_cols=175 Identities=13% Similarity=0.097 Sum_probs=87.1
Q ss_pred CCcEEEEecC--CCeEEEEEcCCCeeeEeecCcccCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceEEEEecCCCCE
Q 016187 76 DATLVATGGG--DDKGFFWRINQGDWASEIQGHKDSVSSLAFSMDGQLL-ASGGLDGLVQIWDPSSGNLKCTLEGPGGGV 152 (394)
Q Consensus 76 ~~~~lasg~~--d~~v~~w~~~~~~~~~~~~~h~~~V~~v~~s~~g~~l-~t~s~d~~i~vwd~~~~~~~~~~~~~~~~v 152 (394)
++.++.|.|. -..|++|++.+++.+.+-.--.+.+..=-...-|.++ +-.=.++.-.++|..+-+.+..+.-... =
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~Ge-G 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGE-G 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCc-c
Confidence 4566666653 5568999999887654322111222211111223322 1223577788888887776655443222 1
Q ss_pred EEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeec--ccCcCe---EEEEECCCCCeEEEEeCCCcEEEEcCCCCceEE
Q 016187 153 EWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFS--GHGSSV---TCGDFTPDGKTICTGSDDATLRVWNPKSGENIH 227 (394)
Q Consensus 153 ~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~--~h~~~v---~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 227 (394)
.. ...++..|+.+....+++.-|.++-......+ ..+.+| +-+.|. +|...|-.=.+..|-..++.+|+.+.
T Consensus 134 Wg--Lt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 134 WG--LTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred ee--eecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 22 23345556666666677766665433222211 112222 222332 45555544445556566677776554
Q ss_pred EEcCCC---------CcccCeEEEEEcCCC-CEEEEE
Q 016187 228 VIRGHP---------YHTEGLTCLTISADS-TLALSG 254 (394)
Q Consensus 228 ~~~~~~---------~~~~~i~~~~~~~~~-~~l~~g 254 (394)
.+.... .+..-.+.+++.|++ +++++|
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 443211 122335567777766 455554
No 493
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=80.70 E-value=4.9 Score=21.80 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=21.3
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEe
Q 016187 332 KYVVTGCVDGKVRVWDSLSGDCVRTF 357 (394)
Q Consensus 332 ~~l~sg~~dg~i~iwd~~~~~~~~~~ 357 (394)
..++.++.+|.+..+|..+|+.+-++
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 36778889999999999999877543
No 494
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=80.17 E-value=56 Score=31.13 Aligned_cols=55 Identities=24% Similarity=0.323 Sum_probs=38.2
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceE--EEE----e-cCCCCEEEEEEcCCC
Q 016187 107 KDSVSSLAFSMDGQLLASGGLDGLVQIWDPSSGNLK--CTL----E-GPGGGVEWVSWHPRG 161 (394)
Q Consensus 107 ~~~V~~v~~s~~g~~l~t~s~d~~i~vwd~~~~~~~--~~~----~-~~~~~v~~~~~~~~~ 161 (394)
-..-+.|+|.|||++|++--..|.|++++..++... ..+ . ...+....++++|+-
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 445678999999988877655799999986554321 111 1 135678899999874
No 495
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=79.89 E-value=42 Score=29.61 Aligned_cols=98 Identities=14% Similarity=0.197 Sum_probs=58.4
Q ss_pred CcEEEEECCCCcEEEEeccCCCCEEEEEECCCCCeEEEEe------CCCcEEEEeCCCCCcceecc-----CCCCEEEEE
Q 016187 258 GSVHMVNITTGKVVSSLVSHTDSIECIGFSRSSPWAATGS------MDQKLIIWDLQHSLPRSTCD-----HEDGVTCLM 326 (394)
Q Consensus 258 g~i~i~d~~~~~~~~~~~~h~~~i~~v~~~~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~-----~~~~v~~~~ 326 (394)
..|.+||..+.+-..--..-.+.|+++.|..+.++++.|. ....+..||+....-..... -..+|+.+.
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~ 95 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALT 95 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEE
Confidence 3588999877654443334567899999987777777764 35568889987543211111 235677776
Q ss_pred EeC-C-CCEEEEEe-CCC--eEEEEECCCCeEEE
Q 016187 327 WLG-T-SKYVVTGC-VDG--KVRVWDSLSGDCVR 355 (394)
Q Consensus 327 ~~~-~-~~~l~sg~-~dg--~i~iwd~~~~~~~~ 355 (394)
+.. + .++.++|. .+| .|..||-.....+.
T Consensus 96 ~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~ 129 (281)
T PF12768_consen 96 FISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIG 129 (281)
T ss_pred eeccCCceEEEeceecCCCceEEEEcCCceEecc
Confidence 642 2 24554544 333 36667755544443
No 496
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=78.77 E-value=76 Score=31.91 Aligned_cols=67 Identities=16% Similarity=0.250 Sum_probs=42.7
Q ss_pred CCEEEEEEcCCCCEEEEecCCCeEEEEeCCccceeeeecccCcCeEEEEECCCCCeEEEEeCCCcEEEEc
Q 016187 150 GGVEWVSWHPRGHIVLAGSEDSTVWMWNADRAAYLNMFSGHGSSVTCGDFTPDGKTICTGSDDATLRVWN 219 (394)
Q Consensus 150 ~~v~~~~~~~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 219 (394)
..++.+.-||.+..++.+..||+|++|+.......+.+. ...+...+.|...| |++..+|..+--|.
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWK 81 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheee
Confidence 446678888999999999999999999875433212111 11222334454444 56666677777775
No 497
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=77.85 E-value=8.1 Score=22.05 Aligned_cols=27 Identities=26% Similarity=0.398 Sum_probs=22.9
Q ss_pred EEEEEeCCCeEEEEECCCCeEEEEeec
Q 016187 333 YVVTGCVDGKVRVWDSLSGDCVRTFSG 359 (394)
Q Consensus 333 ~l~sg~~dg~i~iwd~~~~~~~~~~~~ 359 (394)
.+..++.+|.|+-.|..+|+.+-++..
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 456679999999999999999987763
No 498
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=74.23 E-value=73 Score=29.38 Aligned_cols=193 Identities=18% Similarity=0.171 Sum_probs=93.8
Q ss_pred EEEEecCCCeEEEEeCCccceeeeeccc--CcCeEEEEECCCCCeEEEEeCCCcEEEEcCCCCceEEEEcCCCCcccCeE
Q 016187 163 IVLAGSEDSTVWMWNADRAAYLNMFSGH--GSSVTCGDFTPDGKTICTGSDDATLRVWNPKSGENIHVIRGHPYHTEGLT 240 (394)
Q Consensus 163 ~l~~~s~d~~i~iw~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~i~ 240 (394)
.++.+..+|.+.-.|..++..+-....- ...+.+-.+..+|+ ++.++.+|.+...|.++|+..-...... . ..+.
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~-~-~~~~ 146 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG-S-PYYA 146 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC-C-eEEe
Confidence 3445567777777777776643211111 11222222223565 7788888999999998888766554322 0 0111
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccCCC---CEEEEEECCCCCeEEEEeC--CCcEEEEeCCCCCccee
Q 016187 241 CLTISADSTLALSGSKDGSVHMVNITTGKVVSSLVSHTD---SIECIGFSRSSPWAATGSM--DQKLIIWDLQHSLPRST 315 (394)
Q Consensus 241 ~~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~---~i~~v~~~~~~~~l~s~s~--dg~i~iwd~~~~~~~~~ 315 (394)
.-.+-.++ .+..++.++.+.-.+..+|+.+=....... .+..-... ....+..+.. ++.+.-.|.........
T Consensus 147 ~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~~vy~~~~~~~~~~~a~~~~~G~~~w~ 224 (370)
T COG1520 147 SPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAI-ASGTVYVGSDGYDGILYALNAEDGTLKWS 224 (370)
T ss_pred cCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCcee-ecceEEEecCCCcceEEEEEccCCcEeee
Confidence 11122233 333344678888888887776433222110 01000001 1222333333 44444455543322221
Q ss_pred ccCCCCEEE-----EEEeC-----CCCEEEEEeCCCeEEEEECCCCeEEEEeecc
Q 016187 316 CDHEDGVTC-----LMWLG-----TSKYVVTGCVDGKVRVWDSLSGDCVRTFSGH 360 (394)
Q Consensus 316 ~~~~~~v~~-----~~~~~-----~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~h 360 (394)
......+.. ..... .+..+..++.+|.+...+..+++.+-++...
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 225 QKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 110000000 00000 1223466778888999999999988877753
No 499
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=73.86 E-value=9.9 Score=37.68 Aligned_cols=67 Identities=13% Similarity=0.255 Sum_probs=47.0
Q ss_pred CCEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCcceeccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 016187 279 DSIECIGFSRSSPWAATGSMDQKLIIWDLQHSLPRSTCDHEDGVTCLMWLGTSKYVVTGCVDGKVRVWD 347 (394)
Q Consensus 279 ~~i~~v~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~iwd 347 (394)
..+.++.-+|.++-+++++.||.|.+|+.........+....+-..+.|...| |+++..|.++.-|.
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHG--LVTATSDRRALAWK 81 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccc--eEEEeccchhheee
Confidence 45677888899999999999999999998655444444444444455555444 55666777777773
No 500
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=73.37 E-value=1.2e+02 Score=31.48 Aligned_cols=194 Identities=12% Similarity=0.157 Sum_probs=0.0
Q ss_pred EECCCCCeEEEEeCCCcEEEEcC-------CCCceEEEEcCCCCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEC-----
Q 016187 198 DFTPDGKTICTGSDDATLRVWNP-------KSGENIHVIRGHPYHTEGLTCLTISADSTLALSGSKDGSVHMVNI----- 265 (394)
Q Consensus 198 ~~~~~~~~l~s~~~dg~i~vwd~-------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~g~~dg~i~i~d~----- 265 (394)
.+.++...+++-+.+|.|+--.. ..+.....++.. ....+..+........++..+..|.+.....
T Consensus 491 dli~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klK--e~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~ 568 (800)
T TIGR01063 491 DLIARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMK--DDDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPE 568 (800)
T ss_pred hccCcceEEEEEcCCCEEEecchhhhhhhcccCcCccccccC--CCCeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcC
Q ss_pred ----CCCcEE---EEeccCCCCEEEEEECC--CCCeEEEEeCCCcEEEEeCCCCCcceeccC-------CCCEEEEEEeC
Q 016187 266 ----TTGKVV---SSLVSHTDSIECIGFSR--SSPWAATGSMDQKLIIWDLQHSLPRSTCDH-------EDGVTCLMWLG 329 (394)
Q Consensus 266 ----~~~~~~---~~~~~h~~~i~~v~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-------~~~v~~~~~~~ 329 (394)
..|..+ ..+.....-+.++.+.. +..+++..+..|.++-.++.........+. .+.+..+....
T Consensus 569 ~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke~D~lv~v~~~~ 648 (800)
T TIGR01063 569 ASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDDGDELISVRLTS 648 (800)
T ss_pred CCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCCCCEEEEEEEeC
Q ss_pred CCCEEEEEeCCCeEEEEEC---------CCCeEEEEeecccCceeEEEEccCCCEEEEEeCCCcEEEEeccCCC
Q 016187 330 TSKYVVTGCVDGKVRVWDS---------LSGDCVRTFSGHRDAIQAISVSAHQDFLVSVSLDGTARVFEIADFK 394 (394)
Q Consensus 330 ~~~~l~sg~~dg~i~iwd~---------~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~dg~i~iw~~~~~~ 394 (394)
....++..+..|.+..+.+ ..|...-.+.. ...|.++..-.+...++..+..|.++...+.+|+
T Consensus 649 ~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~~-~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~ 721 (800)
T TIGR01063 649 GDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLKN-EDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYR 721 (800)
T ss_pred CCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCCC-CCEEEEEEEeccccEEEEEecCCcEEEEEHHHcc
Done!