Query 016188
Match_columns 394
No_of_seqs 275 out of 2833
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 04:36:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016188.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016188hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0117 Heterogeneous nuclear 100.0 3.5E-48 7.5E-53 343.9 31.7 256 18-314 78-338 (506)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.2E-46 2.5E-51 354.1 33.9 280 22-309 2-351 (352)
3 KOG0148 Apoptosis-promoting RN 100.0 8.5E-47 1.8E-51 314.6 25.0 239 20-310 3-241 (321)
4 TIGR01648 hnRNP-R-Q heterogene 100.0 2E-45 4.4E-50 352.8 36.2 251 18-310 53-310 (578)
5 TIGR01628 PABP-1234 polyadenyl 100.0 2.1E-43 4.6E-48 350.6 34.2 270 22-308 87-365 (562)
6 TIGR01628 PABP-1234 polyadenyl 100.0 2.5E-41 5.4E-46 335.8 30.4 252 25-308 2-262 (562)
7 KOG0145 RNA-binding protein EL 100.0 3.8E-41 8.2E-46 279.1 26.2 279 20-307 38-358 (360)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.5E-39 3.3E-44 315.1 33.7 274 22-308 1-352 (481)
9 TIGR01622 SF-CC1 splicing fact 100.0 2.2E-39 4.7E-44 314.9 33.0 285 20-306 86-447 (457)
10 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.9E-38 4.1E-43 307.4 33.2 276 22-307 95-480 (481)
11 TIGR01642 U2AF_lg U2 snRNP aux 100.0 5.6E-38 1.2E-42 309.2 32.9 279 17-306 169-501 (509)
12 KOG0144 RNA-binding protein CU 100.0 2.6E-38 5.6E-43 279.9 22.7 287 17-309 28-506 (510)
13 TIGR01645 half-pint poly-U bin 100.0 2.2E-36 4.8E-41 290.7 32.2 178 19-197 103-284 (612)
14 KOG0127 Nucleolar protein fibr 100.0 1.4E-35 3.1E-40 269.5 26.7 282 24-307 6-378 (678)
15 TIGR01659 sex-lethal sex-letha 100.0 1.4E-33 3.1E-38 258.7 25.6 167 112-309 103-277 (346)
16 TIGR01659 sex-lethal sex-letha 100.0 1.6E-32 3.5E-37 251.7 22.8 173 19-199 103-277 (346)
17 KOG0123 Polyadenylate-binding 100.0 1.2E-31 2.7E-36 247.0 22.5 239 24-306 2-245 (369)
18 KOG0123 Polyadenylate-binding 100.0 9.2E-31 2E-35 241.2 19.6 271 21-308 74-350 (369)
19 TIGR01645 half-pint poly-U bin 100.0 6.1E-30 1.3E-34 246.4 22.0 174 115-308 106-285 (612)
20 KOG0144 RNA-binding protein CU 100.0 5.5E-30 1.2E-34 227.2 18.1 171 113-313 31-212 (510)
21 TIGR01648 hnRNP-R-Q heterogene 100.0 7.7E-29 1.7E-33 238.6 26.0 229 21-260 136-368 (578)
22 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.3E-28 2.9E-33 231.5 26.6 163 115-308 2-172 (352)
23 KOG0147 Transcriptional coacti 100.0 1.3E-29 2.9E-34 232.1 15.3 284 19-305 175-526 (549)
24 KOG0148 Apoptosis-promoting RN 100.0 7.4E-29 1.6E-33 207.5 16.8 168 23-199 62-240 (321)
25 KOG0124 Polypyrimidine tract-b 100.0 2.8E-28 6E-33 211.9 16.8 280 23-304 113-532 (544)
26 KOG0127 Nucleolar protein fibr 100.0 6E-28 1.3E-32 220.1 17.6 263 23-289 117-516 (678)
27 KOG0110 RNA-binding protein (R 100.0 1.6E-27 3.4E-32 224.3 18.7 260 19-308 381-694 (725)
28 TIGR01622 SF-CC1 splicing fact 100.0 4.4E-27 9.4E-32 228.7 22.3 173 114-306 87-265 (457)
29 KOG4212 RNA-binding protein hn 99.9 5.1E-25 1.1E-29 195.8 26.0 167 20-189 41-286 (608)
30 KOG0145 RNA-binding protein EL 99.9 3.6E-26 7.9E-31 190.2 13.7 165 113-308 38-210 (360)
31 KOG4211 Splicing factor hnRNP- 99.9 5.3E-24 1.1E-28 192.9 26.1 277 19-305 6-356 (510)
32 KOG0117 Heterogeneous nuclear 99.9 1.7E-24 3.7E-29 193.4 22.5 172 21-201 162-335 (506)
33 KOG0131 Splicing factor 3b, su 99.9 1.1E-25 2.3E-30 178.0 12.6 174 21-201 7-181 (203)
34 KOG0109 RNA-binding protein LA 99.9 2.1E-25 4.6E-30 188.7 14.9 149 117-308 3-151 (346)
35 KOG0131 Splicing factor 3b, su 99.9 3.1E-25 6.7E-30 175.4 12.1 167 115-311 8-181 (203)
36 KOG4205 RNA-binding protein mu 99.9 3.5E-24 7.6E-29 190.5 15.1 174 115-315 5-184 (311)
37 TIGR01642 U2AF_lg U2 snRNP aux 99.9 2.2E-23 4.8E-28 205.6 21.4 176 20-196 292-501 (509)
38 KOG1190 Polypyrimidine tract-b 99.9 1.3E-22 2.7E-27 179.4 22.6 284 18-313 23-379 (492)
39 KOG0109 RNA-binding protein LA 99.9 1.5E-24 3.3E-29 183.5 9.8 149 25-199 4-152 (346)
40 KOG4205 RNA-binding protein mu 99.9 4.8E-23 1E-27 183.3 12.3 175 22-200 5-179 (311)
41 KOG0146 RNA-binding protein ET 99.9 5.4E-23 1.2E-27 172.0 11.6 195 114-310 17-368 (371)
42 KOG0124 Polypyrimidine tract-b 99.9 6.2E-23 1.3E-27 178.7 10.8 172 116-307 113-290 (544)
43 KOG1190 Polypyrimidine tract-b 99.9 1.8E-20 4E-25 165.8 23.8 276 22-307 149-491 (492)
44 KOG0110 RNA-binding protein (R 99.9 2.4E-21 5.2E-26 182.8 12.8 174 24-199 516-695 (725)
45 KOG1456 Heterogeneous nuclear 99.8 9.7E-19 2.1E-23 153.2 25.4 286 11-308 19-364 (494)
46 KOG0146 RNA-binding protein ET 99.8 3.5E-20 7.6E-25 155.2 12.9 176 22-199 18-367 (371)
47 KOG0120 Splicing factor U2AF, 99.8 8.2E-20 1.8E-24 170.4 16.2 277 15-305 167-490 (500)
48 KOG0147 Transcriptional coacti 99.8 1.1E-20 2.5E-25 173.7 7.3 175 116-308 179-359 (549)
49 KOG1456 Heterogeneous nuclear 99.8 4E-17 8.6E-22 143.2 27.6 278 19-307 116-491 (494)
50 KOG4206 Spliceosomal protein s 99.8 3.7E-18 8E-23 141.1 17.7 186 115-305 8-220 (221)
51 KOG0105 Alternative splicing f 99.8 1.3E-18 2.7E-23 138.1 14.3 155 19-184 2-175 (241)
52 PLN03134 glycine-rich RNA-bind 99.8 2.5E-18 5.4E-23 138.5 16.1 81 229-309 30-116 (144)
53 KOG4211 Splicing factor hnRNP- 99.8 9.3E-18 2E-22 152.7 17.7 165 116-305 10-180 (510)
54 KOG0105 Alternative splicing f 99.8 1.3E-17 2.8E-22 132.4 15.2 172 115-295 5-176 (241)
55 KOG1365 RNA-binding protein Fu 99.8 4.4E-17 9.5E-22 143.3 18.2 281 19-305 56-360 (508)
56 KOG4206 Spliceosomal protein s 99.8 8.3E-17 1.8E-21 133.1 16.9 165 21-194 7-219 (221)
57 PLN03134 glycine-rich RNA-bind 99.7 1.8E-16 3.8E-21 127.7 12.7 87 112-199 30-116 (144)
58 KOG1457 RNA binding protein (c 99.7 4.4E-16 9.5E-21 127.5 14.0 181 114-295 32-274 (284)
59 KOG0106 Alternative splicing f 99.7 1.4E-16 3.1E-21 133.3 8.8 167 117-305 2-169 (216)
60 KOG4212 RNA-binding protein hn 99.7 3.3E-15 7.1E-20 133.8 16.8 192 116-308 44-295 (608)
61 KOG1548 Transcription elongati 99.7 6.3E-15 1.4E-19 128.5 16.3 187 116-305 134-350 (382)
62 KOG0125 Ataxin 2-binding prote 99.6 9.7E-16 2.1E-20 132.6 10.1 95 228-322 91-189 (376)
63 KOG0106 Alternative splicing f 99.6 6.5E-16 1.4E-20 129.3 7.0 152 24-194 2-168 (216)
64 KOG0122 Translation initiation 99.6 5.2E-15 1.1E-19 123.2 11.0 85 18-104 184-268 (270)
65 KOG0107 Alternative splicing f 99.6 6.3E-15 1.4E-19 116.5 10.8 79 233-311 10-89 (195)
66 KOG0149 Predicted RNA-binding 99.6 1.8E-15 4E-20 125.4 7.8 79 116-196 12-90 (247)
67 KOG1548 Transcription elongati 99.6 9.6E-14 2.1E-18 121.2 17.8 169 22-198 133-353 (382)
68 KOG1457 RNA binding protein (c 99.6 1E-13 2.2E-18 113.8 16.1 160 20-184 31-273 (284)
69 PF00076 RRM_1: RNA recognitio 99.6 8.5E-15 1.8E-19 103.5 7.3 69 26-95 1-69 (70)
70 KOG0149 Predicted RNA-binding 99.6 1.8E-14 3.9E-19 119.5 9.6 81 21-102 10-90 (247)
71 PF00076 RRM_1: RNA recognitio 99.5 5.1E-14 1.1E-18 99.5 9.2 70 119-190 1-70 (70)
72 KOG0121 Nuclear cap-binding pr 99.5 2.9E-14 6.3E-19 106.6 7.6 74 232-305 35-114 (153)
73 KOG0107 Alternative splicing f 99.5 2.8E-14 6.1E-19 112.9 7.4 77 23-104 10-86 (195)
74 PLN03120 nucleic acid binding 99.5 6.9E-14 1.5E-18 120.4 10.2 74 233-307 4-80 (260)
75 KOG4207 Predicted splicing fac 99.5 5.8E-14 1.3E-18 113.8 8.7 75 231-305 11-91 (256)
76 KOG0125 Ataxin 2-binding prote 99.5 1.8E-13 3.8E-18 118.7 10.5 82 19-102 92-173 (376)
77 KOG0122 Translation initiation 99.5 1.1E-13 2.5E-18 115.2 9.0 83 114-197 187-269 (270)
78 PF14259 RRM_6: RNA recognitio 99.5 8.7E-14 1.9E-18 98.3 6.9 68 26-94 1-68 (70)
79 COG0724 RNA-binding proteins ( 99.5 7.1E-13 1.5E-17 120.6 14.6 145 116-268 115-260 (306)
80 COG0724 RNA-binding proteins ( 99.5 8.5E-13 1.8E-17 120.1 14.3 153 23-176 115-284 (306)
81 PF14259 RRM_6: RNA recognitio 99.5 3E-13 6.5E-18 95.5 8.7 70 119-190 1-70 (70)
82 KOG1365 RNA-binding protein Fu 99.5 4.5E-13 9.8E-18 118.3 10.9 179 15-197 153-362 (508)
83 KOG0114 Predicted RNA-binding 99.4 6.3E-13 1.4E-17 95.7 8.6 76 231-306 16-94 (124)
84 KOG0121 Nuclear cap-binding pr 99.4 3.1E-13 6.8E-18 101.1 7.1 82 115-197 35-116 (153)
85 KOG0113 U1 small nuclear ribon 99.4 7.7E-13 1.7E-17 113.4 10.4 86 111-197 96-181 (335)
86 PLN03120 nucleic acid binding 99.4 1.3E-12 2.7E-17 112.7 10.9 77 116-197 4-80 (260)
87 PF13893 RRM_5: RNA recognitio 99.4 1.4E-12 3.1E-17 87.5 8.8 55 250-304 1-56 (56)
88 PLN03213 repressor of silencin 99.4 9.1E-13 2E-17 120.1 10.1 75 231-305 8-86 (759)
89 KOG0129 Predicted RNA-binding 99.4 1E-11 2.2E-16 114.5 16.6 155 19-177 255-431 (520)
90 KOG4207 Predicted splicing fac 99.4 5.5E-13 1.2E-17 108.2 7.3 84 111-195 8-91 (256)
91 smart00362 RRM_2 RNA recogniti 99.4 2.8E-12 6.1E-17 90.6 9.2 68 235-302 1-72 (72)
92 PLN03121 nucleic acid binding 99.4 2.6E-12 5.6E-17 108.8 10.2 73 232-305 4-79 (243)
93 KOG0126 Predicted RNA-binding 99.4 7E-14 1.5E-18 111.1 0.7 85 115-200 34-118 (219)
94 KOG0120 Splicing factor U2AF, 99.4 5.8E-12 1.2E-16 118.3 13.4 178 19-197 285-492 (500)
95 KOG0114 Predicted RNA-binding 99.4 4.3E-12 9.4E-17 91.4 9.2 83 113-199 15-97 (124)
96 KOG0113 U1 small nuclear ribon 99.4 3.3E-12 7.2E-17 109.5 9.7 83 19-101 97-179 (335)
97 KOG0111 Cyclophilin-type pepti 99.4 7.1E-13 1.5E-17 108.5 5.4 81 230-310 7-93 (298)
98 smart00362 RRM_2 RNA recogniti 99.3 5.3E-12 1.2E-16 89.2 8.3 70 25-96 1-70 (72)
99 PLN03121 nucleic acid binding 99.3 8.2E-12 1.8E-16 105.8 10.4 77 116-197 5-81 (243)
100 PLN03213 repressor of silencin 99.3 5E-12 1.1E-16 115.3 9.6 79 114-197 8-88 (759)
101 KOG0111 Cyclophilin-type pepti 99.3 1E-12 2.2E-17 107.7 4.0 85 115-200 9-93 (298)
102 smart00360 RRM RNA recognition 99.3 8E-12 1.7E-16 87.9 8.2 69 28-96 1-69 (71)
103 KOG0130 RNA-binding protein RB 99.3 5E-12 1.1E-16 95.6 6.7 89 110-199 66-154 (170)
104 KOG4454 RNA binding protein (R 99.3 6.8E-13 1.5E-17 108.7 1.9 149 18-190 4-156 (267)
105 smart00360 RRM RNA recognition 99.3 2.1E-11 4.5E-16 85.8 8.9 71 121-192 1-71 (71)
106 KOG0108 mRNA cleavage and poly 99.3 7.8E-12 1.7E-16 116.9 8.0 83 117-200 19-101 (435)
107 KOG0128 RNA-binding protein SA 99.3 6.8E-13 1.5E-17 128.6 0.4 236 23-307 571-815 (881)
108 cd00590 RRM RRM (RNA recogniti 99.3 3.8E-11 8.2E-16 85.2 9.4 69 235-303 1-74 (74)
109 KOG0126 Predicted RNA-binding 99.3 3.9E-13 8.5E-18 106.9 -1.5 78 21-98 33-110 (219)
110 KOG0130 RNA-binding protein RB 99.3 2.2E-11 4.7E-16 92.2 7.9 81 22-104 71-151 (170)
111 KOG0129 Predicted RNA-binding 99.2 2.5E-10 5.5E-15 105.5 15.4 163 114-288 257-432 (520)
112 KOG4307 RNA binding protein RB 99.2 3.1E-10 6.7E-15 107.8 14.8 181 118-302 313-509 (944)
113 KOG4660 Protein Mei2, essentia 99.2 2.4E-10 5.2E-15 106.5 13.3 161 19-193 71-246 (549)
114 cd00590 RRM RRM (RNA recogniti 99.2 2E-10 4.3E-15 81.4 10.0 74 118-193 1-74 (74)
115 KOG0153 Predicted RNA-binding 99.2 9.6E-11 2.1E-15 102.8 9.4 81 226-306 221-302 (377)
116 smart00361 RRM_1 RNA recogniti 99.2 1.2E-10 2.5E-15 81.9 8.1 61 130-191 2-69 (70)
117 KOG0108 mRNA cleavage and poly 99.2 1.1E-10 2.5E-15 109.1 9.5 78 24-103 19-96 (435)
118 KOG4307 RNA binding protein RB 99.1 4.1E-09 8.9E-14 100.3 16.8 70 234-303 868-943 (944)
119 PF13893 RRM_5: RNA recognitio 99.1 4.9E-10 1.1E-14 75.0 7.7 56 133-194 1-56 (56)
120 KOG0128 RNA-binding protein SA 99.1 6.3E-12 1.4E-16 122.0 -2.7 152 20-197 664-815 (881)
121 smart00361 RRM_1 RNA recogniti 99.1 3.8E-10 8.1E-15 79.3 7.0 61 37-97 2-69 (70)
122 KOG0132 RNA polymerase II C-te 99.1 2.7E-10 5.8E-15 109.6 8.1 79 233-311 421-499 (894)
123 KOG0116 RasGAP SH3 binding pro 99.1 1.1E-09 2.3E-14 102.0 11.4 75 233-308 288-368 (419)
124 KOG4210 Nuclear localization s 99.0 3.1E-10 6.6E-15 101.5 6.2 176 22-199 87-266 (285)
125 KOG0415 Predicted peptidyl pro 99.0 4.3E-10 9.4E-15 98.7 6.7 84 114-198 237-320 (479)
126 KOG0112 Large RNA-binding prot 99.0 3.9E-10 8.5E-15 110.3 6.3 163 114-310 370-534 (975)
127 KOG4210 Nuclear localization s 99.0 8.5E-10 1.8E-14 98.7 7.9 175 114-310 86-267 (285)
128 KOG0415 Predicted peptidyl pro 99.0 7.2E-10 1.6E-14 97.4 6.4 87 14-100 230-316 (479)
129 KOG0226 RNA-binding proteins [ 98.9 9.8E-10 2.1E-14 92.5 5.3 168 24-197 97-270 (290)
130 KOG4208 Nucleolar RNA-binding 98.9 5.2E-09 1.1E-13 85.7 8.5 90 108-197 41-130 (214)
131 KOG4660 Protein Mei2, essentia 98.9 2.3E-09 5E-14 100.1 6.6 179 112-306 71-249 (549)
132 KOG0112 Large RNA-binding prot 98.9 2.5E-09 5.5E-14 104.7 7.1 166 19-201 368-535 (975)
133 KOG0132 RNA polymerase II C-te 98.9 3.3E-09 7.2E-14 102.3 7.7 107 23-137 421-527 (894)
134 KOG4454 RNA binding protein (R 98.9 5.7E-10 1.2E-14 91.8 0.9 138 113-292 6-148 (267)
135 KOG4208 Nucleolar RNA-binding 98.8 8.9E-09 1.9E-13 84.4 7.2 81 23-103 49-130 (214)
136 KOG4661 Hsp27-ERE-TATA-binding 98.8 6E-09 1.3E-13 97.0 6.9 77 232-308 404-486 (940)
137 KOG0226 RNA-binding proteins [ 98.8 3.6E-09 7.8E-14 89.1 4.8 164 118-307 98-270 (290)
138 KOG0153 Predicted RNA-binding 98.7 4.9E-08 1.1E-12 86.1 9.0 86 12-104 217-302 (377)
139 KOG4661 Hsp27-ERE-TATA-binding 98.7 7.8E-08 1.7E-12 89.8 8.2 84 114-198 403-486 (940)
140 PF04059 RRM_2: RNA recognitio 98.6 3.9E-07 8.4E-12 67.2 9.4 81 24-104 2-86 (97)
141 KOG0533 RRM motif-containing p 98.6 2.1E-07 4.5E-12 80.4 8.5 80 20-100 80-159 (243)
142 PF04059 RRM_2: RNA recognitio 98.6 5.7E-07 1.2E-11 66.3 9.2 79 117-195 2-85 (97)
143 KOG2193 IGF-II mRNA-binding pr 98.5 2.1E-08 4.6E-13 90.3 0.4 152 117-307 2-157 (584)
144 KOG0151 Predicted splicing reg 98.5 3.7E-07 8E-12 87.6 8.6 82 227-308 168-258 (877)
145 KOG0533 RRM motif-containing p 98.4 1.5E-06 3.3E-11 75.1 8.2 83 116-200 83-165 (243)
146 KOG0116 RasGAP SH3 binding pro 98.4 1.4E-06 3.1E-11 81.5 8.2 80 20-100 285-364 (419)
147 KOG4209 Splicing factor RNPS1, 98.3 2E-06 4.4E-11 74.6 7.8 77 230-307 98-180 (231)
148 PF08777 RRM_3: RNA binding mo 98.3 1.5E-06 3.2E-11 65.7 6.0 70 234-303 2-76 (105)
149 PF11608 Limkain-b1: Limkain b 98.3 3.5E-06 7.6E-11 59.0 6.9 69 234-306 3-76 (90)
150 KOG4209 Splicing factor RNPS1, 98.3 1.1E-06 2.4E-11 76.2 5.5 84 112-197 97-180 (231)
151 PF11608 Limkain-b1: Limkain b 98.2 6.6E-06 1.4E-10 57.6 7.2 68 24-101 3-75 (90)
152 KOG0151 Predicted splicing reg 98.1 7.7E-06 1.7E-10 78.9 8.4 79 22-102 173-254 (877)
153 KOG2193 IGF-II mRNA-binding pr 98.1 3.9E-07 8.4E-12 82.3 -1.3 154 24-196 2-156 (584)
154 PF14605 Nup35_RRM_2: Nup53/35 98.0 1.9E-05 4E-10 51.6 5.1 52 234-286 2-53 (53)
155 PF08777 RRM_3: RNA binding mo 97.9 2.4E-05 5.2E-10 59.2 5.4 59 24-88 2-60 (105)
156 KOG4676 Splicing factor, argin 97.9 5.9E-06 1.3E-10 74.2 1.8 153 25-185 9-214 (479)
157 KOG4676 Splicing factor, argin 97.8 3.3E-05 7.2E-10 69.5 5.8 176 117-295 8-214 (479)
158 KOG4849 mRNA cleavage factor I 97.7 5.7E-05 1.2E-09 66.9 5.7 80 19-98 76-157 (498)
159 KOG3152 TBP-binding protein, a 97.7 3.3E-05 7.2E-10 65.7 3.5 71 24-94 75-157 (278)
160 KOG1995 Conserved Zn-finger pr 97.7 0.00014 3E-09 65.3 7.0 81 230-310 63-157 (351)
161 KOG4849 mRNA cleavage factor I 97.6 0.0004 8.7E-09 61.7 9.1 69 233-301 80-156 (498)
162 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00016 3.5E-09 47.1 5.0 52 24-82 2-53 (53)
163 KOG1995 Conserved Zn-finger pr 97.6 0.0001 2.3E-09 66.0 5.2 85 113-198 63-155 (351)
164 COG5175 MOT2 Transcriptional r 97.5 0.00016 3.5E-09 63.9 5.7 74 24-97 115-197 (480)
165 PF05172 Nup35_RRM: Nup53/35/4 97.5 0.00071 1.5E-08 50.3 7.9 72 233-306 6-91 (100)
166 KOG1996 mRNA splicing factor [ 97.5 0.00029 6.2E-09 61.2 6.2 59 247-305 300-365 (378)
167 KOG3152 TBP-binding protein, a 97.4 9E-05 1.9E-09 63.2 2.3 67 232-298 73-157 (278)
168 COG5175 MOT2 Transcriptional r 97.3 0.00052 1.1E-08 60.8 6.5 81 116-197 114-203 (480)
169 KOG1855 Predicted RNA-binding 97.3 0.0009 2E-08 61.3 8.0 63 230-292 228-309 (484)
170 KOG1855 Predicted RNA-binding 97.2 0.0003 6.6E-09 64.3 3.5 78 22-99 230-320 (484)
171 KOG2314 Translation initiation 97.1 0.00099 2.1E-08 63.1 6.1 70 23-93 58-133 (698)
172 PF08675 RNA_bind: RNA binding 97.0 0.0031 6.7E-08 44.4 6.5 60 19-87 5-64 (87)
173 PF05172 Nup35_RRM: Nup53/35/4 97.0 0.0017 3.6E-08 48.4 5.5 73 21-95 4-83 (100)
174 KOG0115 RNA-binding protein p5 97.0 0.0017 3.8E-08 55.6 5.9 86 171-293 6-96 (275)
175 PF08952 DUF1866: Domain of un 97.0 0.0044 9.4E-08 49.1 7.5 74 230-306 24-106 (146)
176 KOG2202 U2 snRNP splicing fact 96.9 0.00038 8.2E-09 59.6 1.6 58 248-305 83-146 (260)
177 KOG2202 U2 snRNP splicing fact 96.9 0.00053 1.1E-08 58.8 2.2 66 131-197 83-148 (260)
178 KOG2416 Acinus (induces apopto 96.9 0.00093 2E-08 63.7 3.6 80 229-308 440-523 (718)
179 KOG0115 RNA-binding protein p5 96.8 0.0038 8.2E-08 53.6 6.6 88 78-181 7-94 (275)
180 PF10309 DUF2414: Protein of u 96.7 0.012 2.6E-07 39.3 7.0 53 24-85 6-62 (62)
181 KOG2314 Translation initiation 96.7 0.0091 2E-07 56.9 8.8 77 114-192 56-139 (698)
182 PF08675 RNA_bind: RNA binding 96.6 0.018 4E-07 40.6 7.6 56 232-290 8-63 (87)
183 PF15023 DUF4523: Protein of u 96.3 0.019 4E-07 44.9 6.9 74 230-305 83-160 (166)
184 PF04847 Calcipressin: Calcipr 96.2 0.021 4.6E-07 47.8 7.3 63 246-308 8-72 (184)
185 KOG1996 mRNA splicing factor [ 96.1 0.017 3.7E-07 50.5 6.4 59 37-95 300-359 (378)
186 KOG2416 Acinus (induces apopto 96.1 0.008 1.7E-07 57.6 4.8 81 111-197 439-522 (718)
187 PF03467 Smg4_UPF3: Smg-4/UPF3 95.9 0.0067 1.4E-07 50.6 3.2 72 21-92 5-82 (176)
188 PF08952 DUF1866: Domain of un 95.8 0.023 4.9E-07 45.1 5.3 55 39-102 52-106 (146)
189 KOG2135 Proteins containing th 95.7 0.0074 1.6E-07 56.3 2.7 74 233-307 372-446 (526)
190 PF07576 BRAP2: BRCA1-associat 95.6 0.23 5E-06 37.8 10.0 71 20-92 10-81 (110)
191 PF10309 DUF2414: Protein of u 95.6 0.11 2.3E-06 34.9 7.1 55 116-179 5-62 (62)
192 KOG2591 c-Mpl binding protein, 95.6 0.041 9E-07 52.5 7.1 70 233-303 175-248 (684)
193 KOG4285 Mitotic phosphoprotein 95.2 0.097 2.1E-06 46.2 7.6 73 233-307 197-270 (350)
194 KOG2591 c-Mpl binding protein, 94.9 0.073 1.6E-06 50.9 6.5 61 19-86 171-233 (684)
195 PF15023 DUF4523: Protein of u 94.8 0.17 3.6E-06 39.7 7.1 77 111-196 81-161 (166)
196 KOG4574 RNA-binding protein (c 94.2 0.057 1.2E-06 54.1 4.3 72 237-308 302-375 (1007)
197 KOG0804 Cytoplasmic Zn-finger 94.1 0.2 4.3E-06 46.8 7.3 70 21-92 72-142 (493)
198 PF03467 Smg4_UPF3: Smg-4/UPF3 94.0 0.077 1.7E-06 44.3 4.3 69 115-184 6-80 (176)
199 PF03880 DbpA: DbpA RNA bindin 93.9 0.41 8.9E-06 33.6 7.2 59 243-304 11-74 (74)
200 KOG2068 MOT2 transcription fac 93.8 0.021 4.7E-07 51.2 0.6 74 234-307 78-163 (327)
201 PF07576 BRAP2: BRCA1-associat 93.7 0.88 1.9E-05 34.6 9.1 67 116-185 12-80 (110)
202 PF07292 NID: Nmi/IFP 35 domai 92.9 0.27 5.8E-06 35.6 4.9 70 162-255 1-74 (88)
203 KOG2068 MOT2 transcription fac 92.8 0.071 1.5E-06 48.0 2.2 70 24-94 78-154 (327)
204 PF11767 SET_assoc: Histone ly 91.7 1 2.2E-05 30.7 6.3 55 244-301 11-65 (66)
205 KOG0804 Cytoplasmic Zn-finger 91.1 1.3 2.7E-05 41.7 8.3 68 116-185 74-141 (493)
206 KOG4574 RNA-binding protein (c 90.6 0.18 3.9E-06 50.8 2.6 73 25-103 300-372 (1007)
207 KOG4285 Mitotic phosphoprotein 90.2 1.3 2.8E-05 39.4 7.1 62 24-93 198-259 (350)
208 KOG2318 Uncharacterized conser 89.9 1.6 3.5E-05 42.4 8.0 75 229-303 170-302 (650)
209 KOG2318 Uncharacterized conser 89.7 1.7 3.8E-05 42.2 8.1 81 19-99 170-302 (650)
210 KOG2135 Proteins containing th 89.5 0.23 5E-06 46.7 2.2 72 119-198 375-447 (526)
211 PF04847 Calcipressin: Calcipr 89.3 0.76 1.6E-05 38.6 5.0 58 36-99 8-67 (184)
212 PF07292 NID: Nmi/IFP 35 domai 89.1 0.83 1.8E-05 33.1 4.3 70 68-137 1-73 (88)
213 KOG2253 U1 snRNP complex, subu 88.2 0.66 1.4E-05 45.7 4.4 73 19-100 36-108 (668)
214 KOG2253 U1 snRNP complex, subu 87.6 0.42 9.2E-06 47.0 2.7 71 231-304 38-108 (668)
215 PF11767 SET_assoc: Histone ly 87.0 2 4.3E-05 29.3 4.9 51 34-93 11-61 (66)
216 PF10567 Nab6_mRNP_bdg: RNA-re 86.4 24 0.00052 31.6 12.8 160 22-181 14-213 (309)
217 KOG4410 5-formyltetrahydrofola 85.5 3.9 8.4E-05 36.1 7.1 46 24-75 331-377 (396)
218 KOG4019 Calcineurin-mediated s 84.6 0.85 1.8E-05 37.4 2.6 75 234-308 11-91 (193)
219 PF03880 DbpA: DbpA RNA bindin 83.4 5.3 0.00012 27.9 6.0 60 125-194 10-74 (74)
220 KOG4483 Uncharacterized conser 83.2 2.6 5.6E-05 39.0 5.3 55 22-83 390-445 (528)
221 PF10567 Nab6_mRNP_bdg: RNA-re 77.8 4.4 9.5E-05 36.1 4.8 74 232-305 14-106 (309)
222 PRK11634 ATP-dependent RNA hel 77.2 15 0.00034 37.4 9.3 61 243-306 497-562 (629)
223 PF14111 DUF4283: Domain of un 76.2 3.1 6.8E-05 33.6 3.4 112 127-268 28-140 (153)
224 PF03468 XS: XS domain; Inter 62.1 12 0.00025 28.9 3.6 48 25-75 10-66 (116)
225 KOG2891 Surface glycoprotein [ 61.8 4.5 9.8E-05 35.5 1.4 63 245-307 173-268 (445)
226 KOG4019 Calcineurin-mediated s 59.3 7.4 0.00016 32.1 2.1 65 24-94 11-80 (193)
227 KOG4410 5-formyltetrahydrofola 57.3 34 0.00075 30.4 6.0 48 233-280 330-378 (396)
228 PF15513 DUF4651: Domain of un 55.5 25 0.00055 23.5 3.8 20 247-266 8-27 (62)
229 COG5638 Uncharacterized conser 54.2 76 0.0017 29.9 7.9 43 17-59 140-187 (622)
230 COG5638 Uncharacterized conser 53.4 62 0.0013 30.4 7.2 77 227-303 140-294 (622)
231 KOG3424 40S ribosomal protein 53.3 34 0.00075 26.0 4.6 47 126-173 33-83 (132)
232 KOG2295 C2H2 Zn-finger protein 49.5 2.9 6.2E-05 40.5 -1.9 70 22-91 230-299 (648)
233 KOG4213 RNA-binding protein La 48.8 26 0.00057 28.9 3.7 49 35-84 118-169 (205)
234 PF14111 DUF4283: Domain of un 47.6 49 0.0011 26.4 5.4 116 26-151 18-139 (153)
235 PRK01178 rps24e 30S ribosomal 46.8 64 0.0014 24.0 5.2 45 127-172 30-78 (99)
236 KOG4008 rRNA processing protei 44.7 21 0.00047 30.8 2.7 36 19-54 36-71 (261)
237 KOG2295 C2H2 Zn-finger protein 43.5 6.1 0.00013 38.4 -0.7 66 232-297 230-301 (648)
238 PF00403 HMA: Heavy-metal-asso 43.4 92 0.002 20.3 6.3 46 235-280 1-46 (62)
239 KOG4483 Uncharacterized conser 42.0 1.3E+02 0.0028 28.4 7.4 54 116-177 391-445 (528)
240 PRK11901 hypothetical protein; 41.6 1.2E+02 0.0027 27.8 7.2 64 20-87 242-306 (327)
241 KOG4365 Uncharacterized conser 40.3 4.6 0.0001 37.9 -1.9 79 24-103 4-82 (572)
242 KOG1295 Nonsense-mediated deca 39.6 27 0.00059 32.5 2.8 69 22-90 6-77 (376)
243 TIGR02542 B_forsyth_147 Bacter 37.8 61 0.0013 24.6 3.9 118 30-169 10-129 (145)
244 TIGR03636 L23_arch archaeal ri 37.3 1.2E+02 0.0025 21.4 5.1 58 25-85 15-74 (77)
245 PRK14548 50S ribosomal protein 37.0 1.1E+02 0.0023 22.1 5.0 58 25-85 22-81 (84)
246 PF14893 PNMA: PNMA 36.6 28 0.0006 32.3 2.4 28 19-46 14-41 (331)
247 COG5193 LHP1 La protein, small 35.7 17 0.00037 34.0 0.9 62 22-83 173-244 (438)
248 PTZ00071 40S ribosomal protein 34.7 1.1E+02 0.0024 24.1 5.1 49 127-177 35-88 (132)
249 PF07530 PRE_C2HC: Associated 33.8 96 0.0021 21.2 4.2 63 131-196 2-64 (68)
250 PF03439 Spt5-NGN: Early trans 33.8 74 0.0016 22.7 3.8 34 49-87 33-66 (84)
251 PF03439 Spt5-NGN: Early trans 33.7 79 0.0017 22.6 4.0 34 259-292 33-67 (84)
252 PF02714 DUF221: Domain of unk 33.2 77 0.0017 29.2 4.9 31 162-194 1-31 (325)
253 PF08544 GHMP_kinases_C: GHMP 31.9 1.8E+02 0.0038 20.2 5.8 43 247-290 36-80 (85)
254 PF08544 GHMP_kinases_C: GHMP 31.8 1.8E+02 0.0038 20.2 5.8 43 38-85 37-79 (85)
255 KOG1295 Nonsense-mediated deca 30.4 69 0.0015 30.0 3.9 62 233-294 7-77 (376)
256 KOG2891 Surface glycoprotein [ 30.2 52 0.0011 29.1 2.9 69 22-90 148-247 (445)
257 COG4907 Predicted membrane pro 28.5 1.2E+02 0.0025 29.3 5.0 17 280-296 526-543 (595)
258 PF00403 HMA: Heavy-metal-asso 28.1 1.7E+02 0.0038 18.9 6.1 54 25-84 1-58 (62)
259 PHA01632 hypothetical protein 27.5 68 0.0015 20.8 2.3 21 26-46 19-39 (64)
260 PF12829 Mhr1: Transcriptional 27.2 1.4E+02 0.003 21.8 4.2 52 239-290 18-72 (91)
261 COG2004 RPS24A Ribosomal prote 27.1 2.3E+02 0.005 21.4 5.5 46 126-172 30-79 (107)
262 KOG3973 Uncharacterized conser 26.5 85 0.0018 28.9 3.6 19 119-137 152-170 (465)
263 PF11061 DUF2862: Protein of u 26.5 1.5E+02 0.0033 20.0 4.0 40 239-279 10-52 (64)
264 PRK08559 nusG transcription an 26.5 1.4E+02 0.0031 24.1 4.8 45 37-86 18-67 (153)
265 PF02714 DUF221: Domain of unk 26.3 1.3E+02 0.0029 27.6 5.3 55 68-137 1-55 (325)
266 PF14893 PNMA: PNMA 26.0 78 0.0017 29.4 3.5 83 115-200 17-100 (331)
267 KOG4008 rRNA processing protei 23.9 57 0.0012 28.3 2.0 34 233-266 40-73 (261)
268 COG2608 CopZ Copper chaperone 22.2 2.7E+02 0.0058 19.0 5.8 46 234-279 4-49 (71)
269 PF11411 DNA_ligase_IV: DNA li 22.0 68 0.0015 18.9 1.4 16 33-48 19-34 (36)
270 PRK14548 50S ribosomal protein 21.4 3.2E+02 0.0069 19.6 6.2 57 119-178 23-80 (84)
271 cd00874 RNA_Cyclase_Class_II R 21.3 6.7E+02 0.014 23.3 10.4 114 30-168 119-239 (326)
272 PF02426 MIase: Muconolactone 20.9 3.4E+02 0.0075 19.8 6.4 54 30-87 10-73 (91)
273 PF14026 DUF4242: Protein of u 20.2 3.2E+02 0.0069 19.1 8.1 62 26-90 3-71 (77)
274 smart00596 PRE_C2HC PRE_C2HC d 20.2 2E+02 0.0044 19.8 3.7 62 131-196 2-64 (69)
No 1
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=3.5e-48 Score=343.92 Aligned_cols=256 Identities=20% Similarity=0.368 Sum_probs=228.1
Q ss_pred CCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCC-CCccce
Q 016188 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPM-PGTEQN 96 (394)
Q Consensus 18 ~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~-~~~~~~ 96 (394)
.-+...+.|||+.||.++.|+||..+|++.|+|.++++++++.+|.++|||||.|+++++|++|++.||+..| .|+.+.
T Consensus 78 ~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~ig 157 (506)
T KOG0117|consen 78 PPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLG 157 (506)
T ss_pred CCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeE
Confidence 3346678899999999999999999999999999999999999999999999999999999999999999988 577777
Q ss_pred eeeecccCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCC-eeEEEEeeCCC-CCCCccEEEEEeCCHHHHHH
Q 016188 97 FRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPS-VRGAKVVTDPN-TGRSKGYGFVKFLDENERNR 174 (394)
Q Consensus 97 v~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~-v~~v~i~~~~~-tg~~~g~afV~f~~~e~a~~ 174 (394)
|.++.+ +++|||+|||.++++++|.+.| ++.++ |.+|.+..++. ..++||||||+|.+...|..
T Consensus 158 vc~Sva-------------n~RLFiG~IPK~k~keeIlee~-~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~ 223 (506)
T KOG0117|consen 158 VCVSVA-------------NCRLFIGNIPKTKKKEEILEEM-KKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAM 223 (506)
T ss_pred EEEeee-------------cceeEeccCCccccHHHHHHHH-HhhCCCeeEEEEecCccccccccceEEEEeecchhHHH
Confidence 777766 7899999999999999999999 66655 88888887754 57999999999999999999
Q ss_pred HHHhhCC--eeecCcceEEeecCCCCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCCCHHHHHH
Q 016188 175 AMTEMNG--VFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQ 252 (394)
Q Consensus 175 ai~~l~~--~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~ 252 (394)
|.++|-. ..+.|..+.|.||.+..... .+.....+.|||+||+.++|+|.|++
T Consensus 224 aRrKl~~g~~klwgn~~tVdWAep~~e~d-------------------------ed~ms~VKvLYVRNL~~~tTeE~lk~ 278 (506)
T KOG0117|consen 224 ARRKLMPGKIKLWGNAITVDWAEPEEEPD-------------------------EDTMSKVKVLYVRNLMESTTEETLKK 278 (506)
T ss_pred HHhhccCCceeecCCcceeeccCcccCCC-------------------------hhhhhheeeeeeeccchhhhHHHHHH
Confidence 9988643 44799999999999876543 12233468899999999999999999
Q ss_pred HhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccCCCCCCCC
Q 016188 253 TFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVTGSVA 314 (394)
Q Consensus 253 ~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~~~~~ 314 (394)
+|++||.|++|+.++| ||||.|.+.++|.+|++.+||++|+|..|.|.+|+++..+...+
T Consensus 279 ~F~~~G~veRVkk~rD--YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k~~r 338 (506)
T KOG0117|consen 279 LFNEFGKVERVKKPRD--YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKKKER 338 (506)
T ss_pred HHHhccceEEeecccc--eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhccch
Confidence 9999999999999955 99999999999999999999999999999999999887766554
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=1.2e-46 Score=354.08 Aligned_cols=280 Identities=28% Similarity=0.459 Sum_probs=225.3
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeeeec
Q 016188 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNW 101 (394)
Q Consensus 22 ~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~~~ 101 (394)
+..+|||+|||.+++|++|+++|++||+|.+|+|++++.+|+++|||||+|.+.++|.+||+.|++..+.++. +.+.+
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~--i~v~~ 79 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKT--IKVSY 79 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCee--EEEEe
Confidence 4678999999999999999999999999999999999989999999999999999999999999999999865 45555
Q ss_pred ccCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCC
Q 016188 102 ASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNG 181 (394)
Q Consensus 102 ~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~ 181 (394)
+... .......+|||+|||.++++++|+++| +.||.|..+.++.+..++.++|||||+|.+.++|+.|++.|++
T Consensus 80 a~~~-----~~~~~~~~l~v~~l~~~~~~~~l~~~f-~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g 153 (352)
T TIGR01661 80 ARPS-----SDSIKGANLYVSGLPKTMTQHELESIF-SPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNG 153 (352)
T ss_pred eccc-----ccccccceEEECCccccCCHHHHHHHH-hccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCC
Confidence 4322 122346789999999999999999999 8999999999999988899999999999999999999999999
Q ss_pred eeecC--cceEEeecCCCCCcccccccc-------ccccc----------------------CCC---------------
Q 016188 182 VFCST--RPMRISAATPKKTTGFQQQYA-------AVKAT----------------------YPV--------------- 215 (394)
Q Consensus 182 ~~~~g--~~l~v~~a~~~~~~~~~~~~~-------~~~~~----------------------~~~--------------- 215 (394)
..+.+ ++|.|.++............. ..... .+.
T Consensus 154 ~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (352)
T TIGR01661 154 TTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQH 233 (352)
T ss_pred CccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhc
Confidence 98866 568888876554221110000 00000 000
Q ss_pred --------CCCCCC----------cccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcE
Q 016188 216 --------AAYTTP----------VQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGC 271 (394)
Q Consensus 216 --------~~~~~~----------~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~------~g~ 271 (394)
.....+ .............+|||+|||+.+++++|+++|++||.|.+++|+.+ +||
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~ 313 (352)
T TIGR01661 234 AVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGY 313 (352)
T ss_pred ccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccce
Confidence 000000 00000111223347999999999999999999999999999999865 799
Q ss_pred EEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccCCC
Q 016188 272 GFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDV 309 (394)
Q Consensus 272 ~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 309 (394)
|||+|.+.++|.+|+..|||..|+||.|+|+|+..+..
T Consensus 314 aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 314 GFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred EEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 99999999999999999999999999999999987653
No 3
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.5e-47 Score=314.63 Aligned_cols=239 Identities=34% Similarity=0.617 Sum_probs=210.8
Q ss_pred cCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeee
Q 016188 20 LEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRL 99 (394)
Q Consensus 20 ~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~ 99 (394)
+++-|+|||+||..++||+-|..+|.+.|.|..|+|+.+ .+.+
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-------------------------------------e~~v 45 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-------------------------------------ELKV 45 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh-------------------------------------hhcc
Confidence 467799999999999999999999999999999998876 4566
Q ss_pred ecccCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhh
Q 016188 100 NWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEM 179 (394)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l 179 (394)
.|+......+++....+-++||+.|.++++.++|++.| .+||+|.+++|++|.+|+++|||+||.|.+.++|+.||..|
T Consensus 46 ~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF-~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~M 124 (321)
T KOG0148|consen 46 NWATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAF-APFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQM 124 (321)
T ss_pred ccccCcccCCCCccccceeEEehhcchhcchHHHHHHh-ccccccccceEeecccCCcccceeEEeccchHHHHHHHHHh
Confidence 66666655566666668899999999999999999999 89999999999999999999999999999999999999999
Q ss_pred CCeeecCcceEEeecCCCCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCC
Q 016188 180 NGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGE 259 (394)
Q Consensus 180 ~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~ 259 (394)
+|..|.+|.|+-.|+..+....- .........-......+++||||||+..+||++|++.|++||.
T Consensus 125 nGqWlG~R~IRTNWATRKp~e~n--------------~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~ 190 (321)
T KOG0148|consen 125 NGQWLGRRTIRTNWATRKPSEMN--------------GKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGP 190 (321)
T ss_pred CCeeeccceeeccccccCccccC--------------CCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCc
Confidence 99999999999999998862211 0011122233455667899999999999999999999999999
Q ss_pred eEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccCCCC
Q 016188 260 IVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVT 310 (394)
Q Consensus 260 i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~ 310 (394)
|.+|++++++||+||.|++.|+|.+||..+|+.+|+|+.+++.|.+.....
T Consensus 191 I~EVRvFk~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 191 IQEVRVFKDQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDG 241 (321)
T ss_pred ceEEEEecccceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCCC
Confidence 999999999999999999999999999999999999999999999976544
No 4
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=2e-45 Score=352.76 Aligned_cols=251 Identities=20% Similarity=0.351 Sum_probs=211.4
Q ss_pred CCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCC-Cccce
Q 016188 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMP-GTEQN 96 (394)
Q Consensus 18 ~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~-~~~~~ 96 (394)
..+...++|||+|||++++|++|+++|++||.|.+|+|+++ .+|+++|||||+|.+.++|++||+.|++..+. ++.+.
T Consensus 53 ~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~ 131 (578)
T TIGR01648 53 VQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLG 131 (578)
T ss_pred CCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccc
Confidence 34455689999999999999999999999999999999999 59999999999999999999999999998885 43333
Q ss_pred eeeecccCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCC-eeEEEEee-CCCCCCCccEEEEEeCCHHHHHH
Q 016188 97 FRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPS-VRGAKVVT-DPNTGRSKGYGFVKFLDENERNR 174 (394)
Q Consensus 97 v~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~-v~~v~i~~-~~~tg~~~g~afV~f~~~e~a~~ 174 (394)
+ .++ ...++|||+|||+++++++|.++| +.+++ +.++.++. ...+++++|||||+|.+.++|..
T Consensus 132 V--~~S-----------~~~~rLFVgNLP~~~TeeeL~eeF-skv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~ 197 (578)
T TIGR01648 132 V--CIS-----------VDNCRLFVGGIPKNKKREEILEEF-SKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAM 197 (578)
T ss_pred c--ccc-----------ccCceeEeecCCcchhhHHHHHHh-hcccCCceEEEEeccccccCccCceEEEEcCCHHHHHH
Confidence 3 222 236789999999999999999999 77754 44444433 33457889999999999999999
Q ss_pred HHHhhCC--eeecCcceEEeecCCCCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCCCHHHHHH
Q 016188 175 AMTEMNG--VFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQ 252 (394)
Q Consensus 175 ai~~l~~--~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~ 252 (394)
|++.|+. ..+.|+.|.|.|+.+..... .......++|||+||+.++++++|++
T Consensus 198 AirkL~~gki~l~Gr~I~VdwA~p~~~~d-------------------------~~~~~~~k~LfVgNL~~~~tee~L~~ 252 (578)
T TIGR01648 198 ARRKLMPGRIQLWGHVIAVDWAEPEEEVD-------------------------EDVMAKVKILYVRNLMTTTTEEIIEK 252 (578)
T ss_pred HHHHhhccceEecCceEEEEeeccccccc-------------------------ccccccccEEEEeCCCCCCCHHHHHH
Confidence 9988764 45789999999997654321 11112347899999999999999999
Q ss_pred Hhccc--CCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccCCCC
Q 016188 253 TFLHF--GEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVT 310 (394)
Q Consensus 253 ~F~~~--G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~ 310 (394)
+|++| |.|++|.+. ++||||+|.+.++|.+|++.||+.+|+|+.|+|+|+++....
T Consensus 253 ~F~~f~~G~I~rV~~~--rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 253 SFSEFKPGKVERVKKI--RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred HHHhcCCCceEEEEee--cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCcc
Confidence 99999 999999887 679999999999999999999999999999999999876543
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=2.1e-43 Score=350.64 Aligned_cols=270 Identities=25% Similarity=0.457 Sum_probs=223.9
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeeeec
Q 016188 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNW 101 (394)
Q Consensus 22 ~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~~~ 101 (394)
...+|||+|||+++++++|+++|+.||.|.+|++..+. +|+++|||||+|.+.++|.+|++.+++..+.++.+.+....
T Consensus 87 ~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~ 165 (562)
T TIGR01628 87 GVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFI 165 (562)
T ss_pred CCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccc
Confidence 34679999999999999999999999999999999986 88899999999999999999999999999988665553322
Q ss_pred ccCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCC
Q 016188 102 ASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNG 181 (394)
Q Consensus 102 ~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~ 181 (394)
.... .........++|||+||++++++++|+++| +.||.|..+.++.+. +++++|||||+|.+.++|.+|++.+++
T Consensus 166 ~~~~--~~~~~~~~~~~l~V~nl~~~~tee~L~~~F-~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g 241 (562)
T TIGR01628 166 KKHE--REAAPLKKFTNLYVKNLDPSVNEDKLRELF-AKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNG 241 (562)
T ss_pred cccc--cccccccCCCeEEEeCCCCcCCHHHHHHHH-HhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCC
Confidence 2211 111233446789999999999999999999 899999999999985 589999999999999999999999999
Q ss_pred eeec----CcceEEeecCCCCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhccc
Q 016188 182 VFCS----TRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHF 257 (394)
Q Consensus 182 ~~~~----g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~ 257 (394)
..+. ++.+.|.++..+.............. ..........++|||+||+..+|+++|+++|++|
T Consensus 242 ~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~------------~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~ 309 (562)
T TIGR01628 242 KKIGLAKEGKKLYVGRAQKRAEREAELRRKFEEL------------QQERKMKAQGVNLYVKNLDDTVTDEKLRELFSEC 309 (562)
T ss_pred cEecccccceeeEeecccChhhhHHHHHhhHHhh------------hhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhc
Confidence 9998 99999988766544311100000000 0001122345789999999999999999999999
Q ss_pred CCeEEEEEeCC-----CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccCC
Q 016188 258 GEIVNVKIPMG-----RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308 (394)
Q Consensus 258 G~i~~~~i~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 308 (394)
|.|.+++++.+ +|||||+|++.++|.+|+..|||+.|+|+.|.|.+|.++.
T Consensus 310 G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~ 365 (562)
T TIGR01628 310 GEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKE 365 (562)
T ss_pred CCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcH
Confidence 99999999865 6999999999999999999999999999999999998654
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=2.5e-41 Score=335.84 Aligned_cols=252 Identities=32% Similarity=0.541 Sum_probs=220.2
Q ss_pred eEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeeeecccC
Q 016188 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWASF 104 (394)
Q Consensus 25 ~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~~~~~~ 104 (394)
+|||+|||++++|++|+++|++||.|.+|+|+++..+++++|||||+|.+.++|.+|++.+++..+.++ .+++.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk--~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGK--PIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe--eEEeecccc
Confidence 699999999999999999999999999999999998899999999999999999999999999999885 466666543
Q ss_pred CCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeee
Q 016188 105 GIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFC 184 (394)
Q Consensus 105 ~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~ 184 (394)
.... ......+|||+|||.++++++|+++| +.||.|..|++..+. +|+++|||||+|.+.++|.+|++.+++..+
T Consensus 80 ~~~~---~~~~~~~vfV~nLp~~~~~~~L~~~F-~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~ 154 (562)
T TIGR01628 80 DPSL---RRSGVGNIFVKNLDKSVDNKALFDTF-SKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLL 154 (562)
T ss_pred cccc---cccCCCceEEcCCCccCCHHHHHHHH-HhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEe
Confidence 3222 12235689999999999999999999 899999999999885 588999999999999999999999999999
Q ss_pred cCcceEEeecCCCCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEE
Q 016188 185 STRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVK 264 (394)
Q Consensus 185 ~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~ 264 (394)
.++.|.|.....+.... .......++|||+||+.++|+++|+++|+.||.|.++.
T Consensus 155 ~~~~i~v~~~~~~~~~~-------------------------~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~ 209 (562)
T TIGR01628 155 NDKEVYVGRFIKKHERE-------------------------AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAA 209 (562)
T ss_pred cCceEEEeccccccccc-------------------------cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEE
Confidence 99999997665443321 00112346799999999999999999999999999999
Q ss_pred EeCC-----CcEEEEEeCchHHHHHHHHHhCCceeC----cEEEEEEEcccCC
Q 016188 265 IPMG-----RGCGFVQFAARASAEEAILRMQGHMIG----QQQVRISWGRKQD 308 (394)
Q Consensus 265 i~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~----g~~l~v~~a~~~~ 308 (394)
+.++ +|||||+|.+.++|.+|++.|||..|. |+.|.|.++..+.
T Consensus 210 i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~ 262 (562)
T TIGR01628 210 VMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRA 262 (562)
T ss_pred EEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChh
Confidence 9864 689999999999999999999999999 9999999876443
No 7
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=3.8e-41 Score=279.14 Aligned_cols=279 Identities=28% Similarity=0.427 Sum_probs=231.0
Q ss_pred cCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeee
Q 016188 20 LEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRL 99 (394)
Q Consensus 20 ~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~ 99 (394)
.+....|.|.-||..+|+|||+.+|...|+|++|++++|+.+|.+.||+||.|.+++||++|+..|||..+.. .++++
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~--KTIKV 115 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQN--KTIKV 115 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeecc--ceEEE
Confidence 3444559999999999999999999999999999999999999999999999999999999999999988887 67777
Q ss_pred ecccCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhh
Q 016188 100 NWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEM 179 (394)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l 179 (394)
+++.+.... -....|||.+||..+|..||.++| ++||.|..-+|+.|.-||.+||.+||.|...++|+.||..|
T Consensus 116 SyARPSs~~-----Ik~aNLYvSGlPktMtqkelE~iF-s~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~l 189 (360)
T KOG0145|consen 116 SYARPSSDS-----IKDANLYVSGLPKTMTQKELEQIF-SPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGL 189 (360)
T ss_pred EeccCChhh-----hcccceEEecCCccchHHHHHHHH-HHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhc
Confidence 877654332 335679999999999999999999 89999999999999999999999999999999999999999
Q ss_pred CCeeecC--cceEEeecCCCCCccccccccc----ccccCCCCCCCC---------------------C---------cc
Q 016188 180 NGVFCST--RPMRISAATPKKTTGFQQQYAA----VKATYPVAAYTT---------------------P---------VQ 223 (394)
Q Consensus 180 ~~~~~~g--~~l~v~~a~~~~~~~~~~~~~~----~~~~~~~~~~~~---------------------~---------~~ 223 (394)
||+.-.| .+|.|+++.............. +.... ....+. | ..
T Consensus 190 NG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~-~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~ 268 (360)
T KOG0145|consen 190 NGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRY-GGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAG 268 (360)
T ss_pred cCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccC-CCcccchhhhhccccccchhhhhccCCCccccccceeee
Confidence 9988644 5799999876654332211100 00000 000000 0 01
Q ss_pred cCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEeCchHHHHHHHHHhCCceeCcE
Q 016188 224 VFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQ 297 (394)
Q Consensus 224 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~ 297 (394)
...+.......+|||-||.++.+|.-|.++|.+||.|..|+|.+| +||+||++.+-++|..|+..|||..+++|
T Consensus 269 ~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~r 348 (360)
T KOG0145|consen 269 VNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR 348 (360)
T ss_pred eccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccce
Confidence 112233445679999999999999999999999999999999987 79999999999999999999999999999
Q ss_pred EEEEEEcccC
Q 016188 298 QVRISWGRKQ 307 (394)
Q Consensus 298 ~l~v~~a~~~ 307 (394)
.|.|+|...+
T Consensus 349 vLQVsFKtnk 358 (360)
T KOG0145|consen 349 VLQVSFKTNK 358 (360)
T ss_pred EEEEEEecCC
Confidence 9999997654
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=1.5e-39 Score=315.07 Aligned_cols=274 Identities=16% Similarity=0.201 Sum_probs=208.4
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHc--CCCCCCCccceeee
Q 016188 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY--NGTPMPGTEQNFRL 99 (394)
Q Consensus 22 ~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l--~~~~~~~~~~~v~~ 99 (394)
++++|||+|||+++++++|+++|++||.|.+|+++++ ++||||+|.+.++|++|++.+ ++..+.++. +.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~--l~v 72 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQP--AFF 72 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeE--EEE
Confidence 4789999999999999999999999999999999875 489999999999999999875 567777754 555
Q ss_pred ecccCCCCCCCC-------CCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHH
Q 016188 100 NWASFGIGEKRP-------DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENER 172 (394)
Q Consensus 100 ~~~~~~~~~~~~-------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a 172 (394)
.++......... ....-.+|+|+||++.+++++|+++| +.||.|..|.++++.. +++|||+|.+.++|
T Consensus 73 ~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F-~~~G~V~~v~i~~~~~----~~~afVef~~~~~A 147 (481)
T TIGR01649 73 NYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIF-NPYGKVLRIVTFTKNN----VFQALVEFESVNSA 147 (481)
T ss_pred EecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHH-hccCCEEEEEEEecCC----ceEEEEEECCHHHH
Confidence 554322111111 11123478999999999999999999 8999999999987642 46899999999999
Q ss_pred HHHHHhhCCeeecC--cceEEeecCCCCCccccccccc-----c---------c-----ccCC-----------CCCCC-
Q 016188 173 NRAMTEMNGVFCST--RPMRISAATPKKTTGFQQQYAA-----V---------K-----ATYP-----------VAAYT- 219 (394)
Q Consensus 173 ~~ai~~l~~~~~~g--~~l~v~~a~~~~~~~~~~~~~~-----~---------~-----~~~~-----------~~~~~- 219 (394)
.+|++.||+..+.+ +.|+|.++.............. . . ...+ ..+..
T Consensus 148 ~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 227 (481)
T TIGR01649 148 QHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSS 227 (481)
T ss_pred HHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCccccc
Confidence 99999999999954 4788888765332100000000 0 0 0000 00000
Q ss_pred -------------------CC---------------cccCCCCCCCCccEEEEcCCCC-CCCHHHHHHHhcccCCeEEEE
Q 016188 220 -------------------TP---------------VQVFPADNDITNTTIFVGNLDP-NVTEEELKQTFLHFGEIVNVK 264 (394)
Q Consensus 220 -------------------~~---------------~~~~~~~~~~~~~~l~v~nl~~-~~t~~~l~~~F~~~G~i~~~~ 264 (394)
.+ ............++|||+||++ .+|+++|+++|+.||.|.+|+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vk 307 (481)
T TIGR01649 228 HGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVK 307 (481)
T ss_pred CCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEE
Confidence 00 0000011134568999999998 699999999999999999999
Q ss_pred EeCC-CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccCC
Q 016188 265 IPMG-RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308 (394)
Q Consensus 265 i~~~-~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 308 (394)
|+++ +|+|||+|.+.++|..|+..|||..|.|+.|+|++++.+.
T Consensus 308 i~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~ 352 (481)
T TIGR01649 308 FMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQN 352 (481)
T ss_pred EEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccccc
Confidence 9876 6999999999999999999999999999999999987654
No 9
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=2.2e-39 Score=314.93 Aligned_cols=285 Identities=21% Similarity=0.356 Sum_probs=222.6
Q ss_pred cCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeee
Q 016188 20 LEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRL 99 (394)
Q Consensus 20 ~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~ 99 (394)
..+.++|||+|||..+++++|+++|++||.|.+|+++.++.+++++|||||+|.+.++|.+|+. |++..+.++.+.+..
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 3457899999999999999999999999999999999999899999999999999999999995 899999997766655
Q ss_pred ecccCCCCCC-----CCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHH
Q 016188 100 NWASFGIGEK-----RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNR 174 (394)
Q Consensus 100 ~~~~~~~~~~-----~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ 174 (394)
.......... .......++|||+|||..+++++|+++| +.||.|..|.++.+..+|+++|||||+|.+.++|..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f-~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~ 243 (457)
T TIGR01622 165 SQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIF-EPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKE 243 (457)
T ss_pred cchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHH-HhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 4332211110 1111236889999999999999999999 899999999999999999999999999999999999
Q ss_pred HHHhhCCeeecCcceEEeecCCCCCccccccc-----------c-----------------c---ccccCCCCC------
Q 016188 175 AMTEMNGVFCSTRPMRISAATPKKTTGFQQQY-----------A-----------------A---VKATYPVAA------ 217 (394)
Q Consensus 175 ai~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~-----------~-----------------~---~~~~~~~~~------ 217 (394)
|+..|++..+.|+.|.|.++............ . . .....+...
T Consensus 244 A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (457)
T TIGR01622 244 ALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQ 323 (457)
T ss_pred HHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhc
Confidence 99999999999999999997532211100000 0 0 000000000
Q ss_pred ------CCC---C-------------cccCC-CCCCCCccEEEEcCCCCCCC----------HHHHHHHhcccCCeEEEE
Q 016188 218 ------YTT---P-------------VQVFP-ADNDITNTTIFVGNLDPNVT----------EEELKQTFLHFGEIVNVK 264 (394)
Q Consensus 218 ------~~~---~-------------~~~~~-~~~~~~~~~l~v~nl~~~~t----------~~~l~~~F~~~G~i~~~~ 264 (394)
... + ..... ........+|+|.||....+ .+||++.|++||.|++|.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~ 403 (457)
T TIGR01622 324 KLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIY 403 (457)
T ss_pred cccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEE
Confidence 000 0 00000 01234568899999965543 378999999999999999
Q ss_pred EeC--CCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEccc
Q 016188 265 IPM--GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRK 306 (394)
Q Consensus 265 i~~--~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 306 (394)
|.. ..|++||+|.++++|.+|++.|||+.|+|+.|.|.+...
T Consensus 404 v~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 404 VDTKNSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVN 447 (457)
T ss_pred EeCCCCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcH
Confidence 974 479999999999999999999999999999999998764
No 10
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=1.9e-38 Score=307.45 Aligned_cols=276 Identities=19% Similarity=0.285 Sum_probs=213.7
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeeeec
Q 016188 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNW 101 (394)
Q Consensus 22 ~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~~~ 101 (394)
...+|||.||++.+++++|+++|+.||.|.+|+|+++. .+++|||+|.+.++|.+|++.|||..|.+..+.+++.|
T Consensus 95 ~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~----~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~ 170 (481)
T TIGR01649 95 KVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN----NVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEY 170 (481)
T ss_pred ceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC----CceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEE
Confidence 34579999999999999999999999999999998865 24689999999999999999999999987666666655
Q ss_pred ccCCCCC------C------------------------------------------------------------------
Q 016188 102 ASFGIGE------K------------------------------------------------------------------ 109 (394)
Q Consensus 102 ~~~~~~~------~------------------------------------------------------------------ 109 (394)
+...... +
T Consensus 171 sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (481)
T TIGR01649 171 AKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSR 250 (481)
T ss_pred ecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCC
Confidence 4421000 0
Q ss_pred ------------------CCCCCCcceEEEcCCCC-CCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHH
Q 016188 110 ------------------RPDAGPEHSIFVGDLAP-DVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDEN 170 (394)
Q Consensus 110 ------------------~~~~~~~~~l~v~nlp~-~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e 170 (394)
.....++.+|||+||++ .+++++|+++| +.||.|..|+++.+ .+|+|||+|.+.+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF-~~yG~V~~vki~~~-----~~g~afV~f~~~~ 324 (481)
T TIGR01649 251 YRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLF-CVYGNVERVKFMKN-----KKETALIEMADPY 324 (481)
T ss_pred CcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHH-HhcCCeEEEEEEeC-----CCCEEEEEECCHH
Confidence 00012457899999998 69999999999 89999999999986 3689999999999
Q ss_pred HHHHHHHhhCCeeecCcceEEeecCCCCCccccccc-cccc---ccCCCCC---CCCCcccCCCCCCCCccEEEEcCCCC
Q 016188 171 ERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQQY-AAVK---ATYPVAA---YTTPVQVFPADNDITNTTIFVGNLDP 243 (394)
Q Consensus 171 ~a~~ai~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~-~~~~---~~~~~~~---~~~~~~~~~~~~~~~~~~l~v~nl~~ 243 (394)
+|..|+..||+..+.|+.|.|.++............ .... ....... ...+..........+..+|||+|||.
T Consensus 325 ~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~ 404 (481)
T TIGR01649 325 QAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPL 404 (481)
T ss_pred HHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCC
Confidence 999999999999999999999987554321111000 0000 0000000 00000000011234568999999999
Q ss_pred CCCHHHHHHHhcccCC--eEEEEEeCC----CcEEEEEeCchHHHHHHHHHhCCceeCcEE------EEEEEcccC
Q 016188 244 NVTEEELKQTFLHFGE--IVNVKIPMG----RGCGFVQFAARASAEEAILRMQGHMIGQQQ------VRISWGRKQ 307 (394)
Q Consensus 244 ~~t~~~l~~~F~~~G~--i~~~~i~~~----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~------l~v~~a~~~ 307 (394)
.+++++|+++|+.||. |..+++... +++|||+|.+.++|.+|+..||++.|.++. |+|++++++
T Consensus 405 ~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 405 SVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred CCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 9999999999999998 888988754 589999999999999999999999999985 999999864
No 11
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=5.6e-38 Score=309.22 Aligned_cols=279 Identities=19% Similarity=0.299 Sum_probs=210.0
Q ss_pred CCCcCCcceEEEcCCCCcCCHHHHHHHHhhc------------CCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHH
Q 016188 17 PMTLEEVRTLWIGDLQYWFDENYLSSCFAHT------------GEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84 (394)
Q Consensus 17 ~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~------------G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~ 84 (394)
+......++|||+|||+++++++|+++|..+ +.|..+.+.. .++||||+|.+.++|..|| .
T Consensus 169 ~~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~------~kg~afVeF~~~e~A~~Al-~ 241 (509)
T TIGR01642 169 QQATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINK------EKNFAFLEFRTVEEATFAM-A 241 (509)
T ss_pred ccCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECC------CCCEEEEEeCCHHHHhhhh-c
Confidence 4456678999999999999999999999975 2344554433 4699999999999999999 5
Q ss_pred cCCCCCCCccceeeeecccCCC-------C---------------CCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCC
Q 016188 85 YNGTPMPGTEQNFRLNWASFGI-------G---------------EKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYP 142 (394)
Q Consensus 85 l~~~~~~~~~~~v~~~~~~~~~-------~---------------~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G 142 (394)
|+|..+.+..+.|......... . .........++|||+|||..+++++|+++| +.||
T Consensus 242 l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f-~~~G 320 (509)
T TIGR01642 242 LDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELL-ESFG 320 (509)
T ss_pred CCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHH-HhcC
Confidence 9999998866555321110000 0 000012345789999999999999999999 8999
Q ss_pred CeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeecCCCCCcccccccccccccCCCCCC-CCC
Q 016188 143 SVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAY-TTP 221 (394)
Q Consensus 143 ~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 221 (394)
.|..+.++.+..+|.++|||||+|.+.++|..|+..|++..+.|+.|.|.++.............. ..+.... ...
T Consensus 321 ~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~---~~~~~~~~~~~ 397 (509)
T TIGR01642 321 DLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNG---MAPVTLLAKAL 397 (509)
T ss_pred CeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCcccccc---ccccccccccc
Confidence 999999999999999999999999999999999999999999999999999865433211110000 0000000 000
Q ss_pred cccCCCCCCCCccEEEEcCCCCCC----------CHHHHHHHhcccCCeEEEEEeCC---------CcEEEEEeCchHHH
Q 016188 222 VQVFPADNDITNTTIFVGNLDPNV----------TEEELKQTFLHFGEIVNVKIPMG---------RGCGFVQFAARASA 282 (394)
Q Consensus 222 ~~~~~~~~~~~~~~l~v~nl~~~~----------t~~~l~~~F~~~G~i~~~~i~~~---------~g~~fV~f~~~~~a 282 (394)
..........+..+|+|.||...- ..++|+++|++||.|.+|.|+++ .|++||+|.++++|
T Consensus 398 ~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A 477 (509)
T TIGR01642 398 SQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSA 477 (509)
T ss_pred hhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHH
Confidence 000111223456889999996421 13689999999999999999864 48999999999999
Q ss_pred HHHHHHhCCceeCcEEEEEEEccc
Q 016188 283 EEAILRMQGHMIGQQQVRISWGRK 306 (394)
Q Consensus 283 ~~a~~~l~g~~~~g~~l~v~~a~~ 306 (394)
.+|+..|||..|+|+.|.|.|...
T Consensus 478 ~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 478 EKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred HHHHHHcCCCEECCeEEEEEEeCH
Confidence 999999999999999999998753
No 12
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.6e-38 Score=279.87 Aligned_cols=287 Identities=24% Similarity=0.431 Sum_probs=234.3
Q ss_pred CCCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCC-CCCCCccc
Q 016188 17 PMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNG-TPMPGTEQ 95 (394)
Q Consensus 17 ~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~-~~~~~~~~ 95 (394)
+..+.+.-+|||+-||..++|+||+++|++||.|.+|.|++|+.++.++|||||.|.+.++|.+|+..|++ +.|.|-.+
T Consensus 28 d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~ 107 (510)
T KOG0144|consen 28 DNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHH 107 (510)
T ss_pred CCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCc
Confidence 34556677899999999999999999999999999999999999999999999999999999999999977 45788888
Q ss_pred eeeeecccCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHH
Q 016188 96 NFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRA 175 (394)
Q Consensus 96 ~v~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~a 175 (394)
.|.+.++... +......++|||+-|++.++|.+++++| ++||.|++|.|++|.. +.+||+|||.|.+.|.|..|
T Consensus 108 pvqvk~Ad~E----~er~~~e~KLFvg~lsK~~te~evr~iF-s~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~A 181 (510)
T KOG0144|consen 108 PVQVKYADGE----RERIVEERKLFVGMLSKQCTENEVREIF-SRFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAA 181 (510)
T ss_pred ceeecccchh----hhccccchhhhhhhccccccHHHHHHHH-HhhCccchhhheeccc-ccccceeEEEEehHHHHHHH
Confidence 9999888642 2222557899999999999999999999 9999999999999976 89999999999999999999
Q ss_pred HHhhCCee-e--cCcceEEeecCCCCCccccccc---------------------------------------------c
Q 016188 176 MTEMNGVF-C--STRPMRISAATPKKTTGFQQQY---------------------------------------------A 207 (394)
Q Consensus 176 i~~l~~~~-~--~g~~l~v~~a~~~~~~~~~~~~---------------------------------------------~ 207 (394)
|+.||+.. + ...+|.|+|++.++.+..+... .
T Consensus 182 ika~ng~~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~ 261 (510)
T KOG0144|consen 182 IKALNGTQTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLG 261 (510)
T ss_pred HHhhccceeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccc
Confidence 99999976 3 4568999999988775332110 0
Q ss_pred -------------------------------cccc------cC------C-------CCC--------------------
Q 016188 208 -------------------------------AVKA------TY------P-------VAA-------------------- 217 (394)
Q Consensus 208 -------------------------------~~~~------~~------~-------~~~-------------------- 217 (394)
.... .. + ...
T Consensus 262 g~~~L~~l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t 341 (510)
T KOG0144|consen 262 GLPPLGPLNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGT 341 (510)
T ss_pred cccCCCCcchhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCC
Confidence 0000 00 0 000
Q ss_pred ---CCC--------------------------C--------------------------------------cccCCCCCC
Q 016188 218 ---YTT--------------------------P--------------------------------------VQVFPADND 230 (394)
Q Consensus 218 ---~~~--------------------------~--------------------------------------~~~~~~~~~ 230 (394)
... + .........
T Consensus 342 ~~~~n~~~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eG 421 (510)
T KOG0144|consen 342 PANYNLAGGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEG 421 (510)
T ss_pred chhcccccccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccC
Confidence 000 0 000001134
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEc
Q 016188 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWG 304 (394)
Q Consensus 231 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 304 (394)
.....|||.+||.+.-+.+|-..|.+||.|.+.++..| ++|+||.|++..+|..||..|||+.|+.++++|.+.
T Consensus 422 peGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk 501 (510)
T KOG0144|consen 422 PEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLK 501 (510)
T ss_pred CCccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEee
Confidence 45678999999999999999999999999999888765 689999999999999999999999999999999988
Q ss_pred ccCCC
Q 016188 305 RKQDV 309 (394)
Q Consensus 305 ~~~~~ 309 (394)
+.+..
T Consensus 502 ~~~~n 506 (510)
T KOG0144|consen 502 RDRNN 506 (510)
T ss_pred eccCC
Confidence 76653
No 13
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=2.2e-36 Score=290.70 Aligned_cols=178 Identities=20% Similarity=0.370 Sum_probs=155.1
Q ss_pred CcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceee
Q 016188 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (394)
Q Consensus 19 ~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~ 98 (394)
.....++|||+|||+++++++|+++|.+||+|.+|+|+.++.+++++|||||+|.+.++|.+|++.|||..+.|+.+.+.
T Consensus 103 a~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~ 182 (612)
T TIGR01645 103 ALAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 182 (612)
T ss_pred hhcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeec
Confidence 33566899999999999999999999999999999999999999999999999999999999999999999999766664
Q ss_pred eecccCCC----CCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHH
Q 016188 99 LNWASFGI----GEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNR 174 (394)
Q Consensus 99 ~~~~~~~~----~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ 174 (394)
........ ..........++|||+||++++++++|+++| +.||.|.++++.+++.+++++|||||+|.+.++|.+
T Consensus 183 rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lF-s~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~k 261 (612)
T TIGR01645 183 RPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVF-EAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 261 (612)
T ss_pred ccccccccccccccccccccccceEEeecCCCCCCHHHHHHHH-hhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHH
Confidence 32111100 0011122345789999999999999999999 899999999999999999999999999999999999
Q ss_pred HHHhhCCeeecCcceEEeecCCC
Q 016188 175 AMTEMNGVFCSTRPMRISAATPK 197 (394)
Q Consensus 175 ai~~l~~~~~~g~~l~v~~a~~~ 197 (394)
|++.||+..+.|+.|+|.++...
T Consensus 262 AI~amNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 262 AIASMNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred HHHHhCCCeeCCeEEEEEecCCC
Confidence 99999999999999999998754
No 14
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.4e-35 Score=269.49 Aligned_cols=282 Identities=22% Similarity=0.337 Sum_probs=221.4
Q ss_pred ceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeeeeccc
Q 016188 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWAS 103 (394)
Q Consensus 24 ~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~~~~~ 103 (394)
.||||++||++++.++|.++|+.+|+|..|.++.+..++.++||+||.|.=.||+++|++.+++..+.|+.+++.+....
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 79999999999999999999999999999999999988899999999999999999999999999999977666653322
Q ss_pred CCCC-----CC----CC----------CCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEE
Q 016188 104 FGIG-----EK----RP----------DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFV 164 (394)
Q Consensus 104 ~~~~-----~~----~~----------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV 164 (394)
.... .+ +. -..+.-+|+|+|||+.+.+++|..+| +.||.|.+|.|++...++.+ |||||
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vF-s~~G~V~Ei~IP~k~dgklc-GFaFV 163 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVF-SNFGKVVEIVIPRKKDGKLC-GFAFV 163 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHH-hhcceEEEEEcccCCCCCcc-ceEEE
Confidence 1111 00 00 01235689999999999999999999 99999999999987764444 99999
Q ss_pred EeCCHHHHHHHHHhhCCeeecCcceEEeecCCCCCcccccc-----c----------c----ccc--------ccCC--C
Q 016188 165 KFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQQ-----Y----------A----AVK--------ATYP--V 215 (394)
Q Consensus 165 ~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a~~~~~~~~~~~-----~----------~----~~~--------~~~~--~ 215 (394)
.|....+|..|++.+|+..|.||+|-|.||.++..-..... . . ... .... .
T Consensus 164 ~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeE 243 (678)
T KOG0127|consen 164 QFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEE 243 (678)
T ss_pred EEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccc
Confidence 99999999999999999999999999999987654322110 0 0 000 0000 0
Q ss_pred --C--------------------CCCCC--------cccC-CCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEE
Q 016188 216 --A--------------------AYTTP--------VQVF-PADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVK 264 (394)
Q Consensus 216 --~--------------------~~~~~--------~~~~-~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~ 264 (394)
. ....+ .+.. ..+......+|||+|||+++|+++|+++|++||.|..+.
T Consensus 244 e~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~ 323 (678)
T KOG0127|consen 244 ETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAI 323 (678)
T ss_pred cccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEE
Confidence 0 00000 0000 012223347999999999999999999999999999988
Q ss_pred EeCC------CcEEEEEeCchHHHHHHHHHh-----CC-ceeCcEEEEEEEcccC
Q 016188 265 IPMG------RGCGFVQFAARASAEEAILRM-----QG-HMIGQQQVRISWGRKQ 307 (394)
Q Consensus 265 i~~~------~g~~fV~f~~~~~a~~a~~~l-----~g-~~~~g~~l~v~~a~~~ 307 (394)
|..+ +|+|||.|.+..+|..||++. .| ..|+||.|+|..|-.+
T Consensus 324 iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 324 IVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTR 378 (678)
T ss_pred EEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccch
Confidence 8763 699999999999999999887 34 5689999999988744
No 15
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=1.4e-33 Score=258.70 Aligned_cols=167 Identities=28% Similarity=0.487 Sum_probs=150.8
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEE
Q 016188 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191 (394)
Q Consensus 112 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v 191 (394)
.....++|||+|||+++++++|+++| +.||.|++|+|+.|+.+++++|||||+|.++++|++|++.|++..+.++.|.|
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF-~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALF-RTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 44568899999999999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC---
Q 016188 192 SAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG--- 268 (394)
Q Consensus 192 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~--- 268 (394)
.++.+.... ...++|||+|||..+|+++|+++|++||.|++++|+++
T Consensus 182 ~~a~p~~~~------------------------------~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~t 231 (346)
T TIGR01659 182 SYARPGGES------------------------------IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLT 231 (346)
T ss_pred ecccccccc------------------------------cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCC
Confidence 987643211 12367999999999999999999999999999999876
Q ss_pred ---CcEEEEEeCchHHHHHHHHHhCCceeCc--EEEEEEEcccCCC
Q 016188 269 ---RGCGFVQFAARASAEEAILRMQGHMIGQ--QQVRISWGRKQDV 309 (394)
Q Consensus 269 ---~g~~fV~f~~~~~a~~a~~~l~g~~~~g--~~l~v~~a~~~~~ 309 (394)
+++|||+|.+.++|++||+.||+..+.+ +.|+|.+++....
T Consensus 232 g~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 232 GTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred CccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcccc
Confidence 4899999999999999999999998865 7899999986544
No 16
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=1.6e-32 Score=251.68 Aligned_cols=173 Identities=24% Similarity=0.427 Sum_probs=153.5
Q ss_pred CcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceee
Q 016188 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (394)
Q Consensus 19 ~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~ 98 (394)
.....++|||+|||+++++++|+++|+.||+|.+|+|+++..++++++||||+|.++++|++|++.|++..+.++. ++
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~--i~ 180 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKR--LK 180 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCce--ee
Confidence 4456789999999999999999999999999999999999989999999999999999999999999999999855 55
Q ss_pred eecccCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHh
Q 016188 99 LNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTE 178 (394)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~ 178 (394)
+.++.... ......+|||+|||+++++++|+++| ++||+|+.++|+.++.+++++|+|||+|.+.++|++||+.
T Consensus 181 V~~a~p~~-----~~~~~~~lfV~nLp~~vtee~L~~~F-~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ 254 (346)
T TIGR01659 181 VSYARPGG-----ESIKDTNLYVTNLPRTITDDQLDTIF-GKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISA 254 (346)
T ss_pred eecccccc-----cccccceeEEeCCCCcccHHHHHHHH-HhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 55543221 12235689999999999999999999 8999999999999999999999999999999999999999
Q ss_pred hCCeeecC--cceEEeecCCCCC
Q 016188 179 MNGVFCST--RPMRISAATPKKT 199 (394)
Q Consensus 179 l~~~~~~g--~~l~v~~a~~~~~ 199 (394)
|++..+.+ +.|.|.++.....
T Consensus 255 lng~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 255 LNNVIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred hCCCccCCCceeEEEEECCcccc
Confidence 99998865 6888888876543
No 17
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-31 Score=247.01 Aligned_cols=239 Identities=30% Similarity=0.531 Sum_probs=213.8
Q ss_pred ceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeeeeccc
Q 016188 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWAS 103 (394)
Q Consensus 24 ~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~~~~~ 103 (394)
..|||+ ++++|..|.++|+++|+|++|+++++. + +-|||||.|.++++|.+|++.+|...+.+ ..+++.|+.
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~--~~~rim~s~ 73 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKG--KPIRIMWSQ 73 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCC--cEEEeehhc
Confidence 358998 999999999999999999999999998 5 99999999999999999999999999999 667888876
Q ss_pred CCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCee
Q 016188 104 FGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVF 183 (394)
Q Consensus 104 ~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~ 183 (394)
.+... |||.||+++++..+|.++| +.||.|.+|++.++.+ | ++|| ||+|.++++|.+|+..+||..
T Consensus 74 rd~~~----------~~i~nl~~~~~~~~~~d~f-~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~l 139 (369)
T KOG0123|consen 74 RDPSL----------VFIKNLDESIDNKSLYDTF-SEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGML 139 (369)
T ss_pred cCCce----------eeecCCCcccCcHHHHHHH-HhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcc
Confidence 55333 9999999999999999999 9999999999999975 5 9999 999999999999999999999
Q ss_pred ecCcceEEeecCCCCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEE
Q 016188 184 CSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNV 263 (394)
Q Consensus 184 ~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~ 263 (394)
+.+++|.|.....+..+...... ....-+.++|.|++.+++++.|.++|..+|.|.++
T Consensus 140 l~~kki~vg~~~~~~er~~~~~~----------------------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~ 197 (369)
T KOG0123|consen 140 LNGKKIYVGLFERKEEREAPLGE----------------------YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSV 197 (369)
T ss_pred cCCCeeEEeeccchhhhcccccc----------------------hhhhhhhhheeccccccchHHHHHhhcccCcceEE
Confidence 99999999888776654322111 12233678999999999999999999999999999
Q ss_pred EEeCC-----CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEccc
Q 016188 264 KIPMG-----RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRK 306 (394)
Q Consensus 264 ~i~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 306 (394)
.++.+ ++|+||.|.++++|..|+..||+..+++..+-|..+..
T Consensus 198 ~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqk 245 (369)
T KOG0123|consen 198 AVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQK 245 (369)
T ss_pred EEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeeccccc
Confidence 99874 79999999999999999999999999999999987765
No 18
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=9.2e-31 Score=241.23 Aligned_cols=271 Identities=25% Similarity=0.464 Sum_probs=221.1
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeeee
Q 016188 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLN 100 (394)
Q Consensus 21 ~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~~ 100 (394)
++...|||.||+++++.++|.++|+.||+|++|++.++. +| ++|| ||+|+++++|++|++.+||..+.++.+-+-+.
T Consensus 74 rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~ 150 (369)
T KOG0123|consen 74 RDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLF 150 (369)
T ss_pred cCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeec
Confidence 344449999999999999999999999999999999997 56 8999 99999999999999999999999976666554
Q ss_pred cccCCCC-CCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhh
Q 016188 101 WASFGIG-EKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEM 179 (394)
Q Consensus 101 ~~~~~~~-~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l 179 (394)
....... ........-..++|.+++.+++++.|.++| +.+|.|..+.++.+.. +++++|+||.|.+.++|..|+..+
T Consensus 151 ~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f-~~~g~i~s~~v~~~~~-g~~~~~gfv~f~~~e~a~~av~~l 228 (369)
T KOG0123|consen 151 ERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLF-SAYGSITSVAVMRDSI-GKSKGFGFVNFENPEDAKKAVETL 228 (369)
T ss_pred cchhhhcccccchhhhhhhhheeccccccchHHHHHhh-cccCcceEEEEeecCC-CCCCCccceeecChhHHHHHHHhc
Confidence 3322111 111123345679999999999999999999 8999999999999865 779999999999999999999999
Q ss_pred CCeeecCcceEEeecCCCCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCC
Q 016188 180 NGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGE 259 (394)
Q Consensus 180 ~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~ 259 (394)
++..+.+..+.|..+..+........... ...............|||.||+..++.+.|+++|+.||.
T Consensus 229 ~~~~~~~~~~~V~~aqkk~e~~~~l~~~~------------~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~Ge 296 (369)
T KOG0123|consen 229 NGKIFGDKELYVGRAQKKSEREAELKRKF------------EQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGE 296 (369)
T ss_pred cCCcCCccceeecccccchhhHHHHhhhh------------HhhhhhccccccccccccccCccccchhHHHHHHhcccc
Confidence 99999999999988876332211000000 000001112334578999999999999999999999999
Q ss_pred eEEEEEeCC-----CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccCC
Q 016188 260 IVNVKIPMG-----RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308 (394)
Q Consensus 260 i~~~~i~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 308 (394)
|.+++|+.+ +|++||.|++.++|.+|+..+|+..+.++.|.|.++....
T Consensus 297 I~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~ 350 (369)
T KOG0123|consen 297 ITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKE 350 (369)
T ss_pred eeeEEEEeccCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhc
Confidence 999999864 7999999999999999999999999999999999887443
No 19
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=6.1e-30 Score=246.36 Aligned_cols=174 Identities=22% Similarity=0.439 Sum_probs=150.3
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeec
Q 016188 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (394)
Q Consensus 115 ~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a 194 (394)
..++|||+||++++++++|+++| +.||.|.+|+++.|+.||+++|||||+|.+.++|.+|++.||+..+.|+.|.|.+.
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF-~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAF-DPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHH-HccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 46789999999999999999999 89999999999999999999999999999999999999999999999999999864
Q ss_pred CCCCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------
Q 016188 195 TPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------ 268 (394)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~------ 268 (394)
........ ............++|||+||++++++++|+++|+.||.|.+++|.++
T Consensus 185 ~~~p~a~~-------------------~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgks 245 (612)
T TIGR01645 185 SNMPQAQP-------------------IIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGH 245 (612)
T ss_pred cccccccc-------------------ccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCc
Confidence 33211100 00000111223478999999999999999999999999999999864
Q ss_pred CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccCC
Q 016188 269 RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308 (394)
Q Consensus 269 ~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 308 (394)
||||||+|.+.++|.+|+..||+..|+|+.|+|.++..++
T Consensus 246 KGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 246 KGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred CCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCc
Confidence 7999999999999999999999999999999999998654
No 20
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=5.5e-30 Score=227.16 Aligned_cols=171 Identities=26% Similarity=0.483 Sum_probs=152.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeee---cCcce
Q 016188 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFC---STRPM 189 (394)
Q Consensus 113 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~---~g~~l 189 (394)
+.+.-+|||+-||..++|+||+++| ++||.|.+|.|++|+.|+.++|+|||.|.+.++|.+|+.+||+... ...+|
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lF-e~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELF-EKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHH-HHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 3556789999999999999999999 8999999999999999999999999999999999999999998764 55678
Q ss_pred EEeecCCCCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-
Q 016188 190 RISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG- 268 (394)
Q Consensus 190 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~- 268 (394)
.|++++....+. ....+|||+-|+..+||.+|+++|++||.|++|.|+++
T Consensus 110 qvk~Ad~E~er~-----------------------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~ 160 (510)
T KOG0144|consen 110 QVKYADGERERI-----------------------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP 160 (510)
T ss_pred eecccchhhhcc-----------------------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc
Confidence 888887765542 23488999999999999999999999999999999985
Q ss_pred ----CcEEEEEeCchHHHHHHHHHhCCce-eCcE--EEEEEEcccCCCCCCC
Q 016188 269 ----RGCGFVQFAARASAEEAILRMQGHM-IGQQ--QVRISWGRKQDVTGSV 313 (394)
Q Consensus 269 ----~g~~fV~f~~~~~a~~a~~~l~g~~-~~g~--~l~v~~a~~~~~~~~~ 313 (394)
||||||+|++.+-|..||+.|||.. +.|+ +|.|+||+.+..+...
T Consensus 161 ~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~~ 212 (510)
T KOG0144|consen 161 DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDGK 212 (510)
T ss_pred cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCchHH
Confidence 8999999999999999999999985 7765 8999999987655433
No 21
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.97 E-value=7.7e-29 Score=238.56 Aligned_cols=229 Identities=17% Similarity=0.212 Sum_probs=170.4
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHhhcCC-ceEEEEeec-CCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceee
Q 016188 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGE-VVSIKIIRN-KITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (394)
Q Consensus 21 ~~~~~v~V~nLp~~~~e~~l~~~f~~~G~-v~~v~i~~~-~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~ 98 (394)
.+.++|||+|||+++++++|.+.|.+++. +.++.+... ...+++++||||+|.++++|..|++.|+...+......+.
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~ 215 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIA 215 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEE
Confidence 34688999999999999999999999864 555544332 2346789999999999999999999887544333336677
Q ss_pred eecccCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhC--CCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHH
Q 016188 99 LNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQY--PSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAM 176 (394)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~--G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai 176 (394)
+.|+..............++|||+||++++++++|+++| +.| |.|+.|.+++ +||||+|.+.++|++|+
T Consensus 216 VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F-~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi 286 (578)
T TIGR01648 216 VDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSF-SEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAM 286 (578)
T ss_pred EEeecccccccccccccccEEEEeCCCCCCCHHHHHHHH-HhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHH
Confidence 888766544433334456789999999999999999999 899 9999997764 49999999999999999
Q ss_pred HhhCCeeecCcceEEeecCCCCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcc
Q 016188 177 TEMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLH 256 (394)
Q Consensus 177 ~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~ 256 (394)
+.||+..|.|+.|.|.++.+.......... ..... .........+...........+++++|++++.+++.+.++|..
T Consensus 287 ~~lnG~~i~Gr~I~V~~Akp~~~~~~~~~~-rg~gg-~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~ 364 (578)
T TIGR01648 287 DELNGKELEGSEIEVTLAKPVDKKSYVRYT-RGTGG-RGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRM 364 (578)
T ss_pred HHhCCCEECCEEEEEEEccCCCcccccccc-cccCC-CcccccccccccCcccCccccccccccccccccccchhhcccc
Confidence 999999999999999999776443211000 00000 0000001111222334445788999999999999999999998
Q ss_pred cCCe
Q 016188 257 FGEI 260 (394)
Q Consensus 257 ~G~i 260 (394)
+|.|
T Consensus 365 ~g~~ 368 (578)
T TIGR01648 365 PGPI 368 (578)
T ss_pred Cccc
Confidence 8863
No 22
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=1.3e-28 Score=231.54 Aligned_cols=163 Identities=25% Similarity=0.533 Sum_probs=148.1
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeec
Q 016188 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (394)
Q Consensus 115 ~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a 194 (394)
+.++|||+|||.++++++|+++| +.||+|.+|+|+.++.+|+++|||||+|.+.++|.+|++.|++..+.|+.|.|.++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F-~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a 80 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLF-TSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYA 80 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHH-HccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEee
Confidence 46899999999999999999999 89999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------
Q 016188 195 TPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------ 268 (394)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~------ 268 (394)
.+.... ...++|||+|||..+++++|+++|++||.|..+.++.+
T Consensus 81 ~~~~~~------------------------------~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~ 130 (352)
T TIGR01661 81 RPSSDS------------------------------IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLS 130 (352)
T ss_pred cccccc------------------------------cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCc
Confidence 654321 12468999999999999999999999999999998764
Q ss_pred CcEEEEEeCchHHHHHHHHHhCCceeCc--EEEEEEEcccCC
Q 016188 269 RGCGFVQFAARASAEEAILRMQGHMIGQ--QQVRISWGRKQD 308 (394)
Q Consensus 269 ~g~~fV~f~~~~~a~~a~~~l~g~~~~g--~~l~v~~a~~~~ 308 (394)
+|+|||+|++.++|.+|+..|||..+.| +.|.|.++..+.
T Consensus 131 ~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 131 KGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPS 172 (352)
T ss_pred CcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCC
Confidence 6899999999999999999999999877 578888887554
No 23
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.96 E-value=1.3e-29 Score=232.05 Aligned_cols=284 Identities=19% Similarity=0.362 Sum_probs=221.5
Q ss_pred CcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceee
Q 016188 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (394)
Q Consensus 19 ~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~ 98 (394)
.+++.++||+--|+...++-+|.++|+.+|.|.+|.++.++.+++++|.|||+|.+.+++..|| .|.|..+.+..+-+.
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq 253 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQ 253 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEec
Confidence 5566789999999999999999999999999999999999999999999999999999999999 789999999666555
Q ss_pred eecccCCCC------CC-CCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHH
Q 016188 99 LNWASFGIG------EK-RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENE 171 (394)
Q Consensus 99 ~~~~~~~~~------~~-~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~ 171 (394)
.+-+..+.. .. +.-..+...|+|+||.+++++++|+..| +.||.|+.|.+.+|..||+++||+||+|.+.++
T Consensus 254 ~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~if-epfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 254 LSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIF-EPFGKIENVQLTKDSETGRSKGFGFITFVNKED 332 (549)
T ss_pred ccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhc-cCcccceeeeeccccccccccCcceEEEecHHH
Confidence 544432211 11 1123445559999999999999999999 899999999999999899999999999999999
Q ss_pred HHHHHHhhCCeeecCcceEEeecCCCCCccccc-c-----------cccccc--------cCCCCC--------------
Q 016188 172 RNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQ-Q-----------YAAVKA--------TYPVAA-------------- 217 (394)
Q Consensus 172 a~~ai~~l~~~~~~g~~l~v~~a~~~~~~~~~~-~-----------~~~~~~--------~~~~~~-------------- 217 (394)
|..|++.||+.++.|+.|+|...+.+....... . ...... ..+...
T Consensus 333 ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~ 412 (549)
T KOG0147|consen 333 ARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLL 412 (549)
T ss_pred HHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhc
Confidence 999999999999999999998765443322110 0 000000 000000
Q ss_pred ----------------CCCCcccCCCCCCCCccEEEEcCCCCCCC----------HHHHHHHhcccCCeEEEEEeCCC-c
Q 016188 218 ----------------YTTPVQVFPADNDITNTTIFVGNLDPNVT----------EEELKQTFLHFGEIVNVKIPMGR-G 270 (394)
Q Consensus 218 ----------------~~~~~~~~~~~~~~~~~~l~v~nl~~~~t----------~~~l~~~F~~~G~i~~~~i~~~~-g 270 (394)
...|... .+.-..++.++.+.|+-..-| .+||.+.+.+||+|.+|.+.++. |
T Consensus 413 ~~~~~~~~~~~~~~~~~~~p~~~-~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g 491 (549)
T KOG0147|consen 413 AKLASAAQFNGVVRVRSVDPADA-SPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAG 491 (549)
T ss_pred cccchHHhhcCCcCccccCcccc-ccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCc
Confidence 0000000 011114556777888754332 37888899999999999998875 9
Q ss_pred EEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcc
Q 016188 271 CGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (394)
Q Consensus 271 ~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 305 (394)
+.||.|.+.+.|..|+.+|||.+|.|+.|+..|-.
T Consensus 492 ~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 492 CVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLP 526 (549)
T ss_pred eEEEecCcHHHHHHHHHHHhhhhhccceeEEEEee
Confidence 99999999999999999999999999999998754
No 24
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=7.4e-29 Score=207.49 Aligned_cols=168 Identities=31% Similarity=0.522 Sum_probs=153.1
Q ss_pred cceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeeeecc
Q 016188 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWA 102 (394)
Q Consensus 23 ~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~~~~ 102 (394)
.--|||+.|.++++-++|++.|.+||+|.+++|++|..+++++||+||.|.++++|++||..|||.+|.. ..|+-+|+
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~--R~IRTNWA 139 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGR--RTIRTNWA 139 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeecc--ceeecccc
Confidence 4569999999999999999999999999999999999999999999999999999999999999999988 67888888
Q ss_pred cCCCCCCCC-----------CCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHH
Q 016188 103 SFGIGEKRP-----------DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENE 171 (394)
Q Consensus 103 ~~~~~~~~~-----------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~ 171 (394)
..+..+... .+..+++|||+||+.-+++++|++.| +.||.|.+|++.++ +||+||.|.+.|+
T Consensus 140 TRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~F-s~fG~I~EVRvFk~------qGYaFVrF~tkEa 212 (321)
T KOG0148|consen 140 TRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTF-SPFGPIQEVRVFKD------QGYAFVRFETKEA 212 (321)
T ss_pred ccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhc-ccCCcceEEEEecc------cceEEEEecchhh
Confidence 776543221 23557889999999999999999999 99999999999998 6799999999999
Q ss_pred HHHHHHhhCCeeecCcceEEeecCCCCC
Q 016188 172 RNRAMTEMNGVFCSTRPMRISAATPKKT 199 (394)
Q Consensus 172 a~~ai~~l~~~~~~g~~l~v~~a~~~~~ 199 (394)
|..||-.+|+.++.|..+++.|-.....
T Consensus 213 AahAIv~mNntei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 213 AAHAIVQMNNTEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred HHHHHHHhcCceeCceEEEEeccccCCC
Confidence 9999999999999999999999866543
No 25
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=2.8e-28 Score=211.91 Aligned_cols=280 Identities=20% Similarity=0.352 Sum_probs=212.8
Q ss_pred cceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeeeecc
Q 016188 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWA 102 (394)
Q Consensus 23 ~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~~~~ 102 (394)
.|+|||+.|..++.|+.|+..|..||+|.+|.+..|+.+++++|||||+|+-+|.|..|++.+|+..+.|+++++..-.
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs- 191 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS- 191 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC-
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999776664211
Q ss_pred cCCCCC-----CCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHH
Q 016188 103 SFGIGE-----KRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMT 177 (394)
Q Consensus 103 ~~~~~~-----~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~ 177 (394)
+..... ...+...-++|||..+.++.+++||+..| +.||+|..|.+-+++.++..+||+|++|.+..+...|+.
T Consensus 192 NmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVF-EAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAia 270 (544)
T KOG0124|consen 192 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVF-EAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 270 (544)
T ss_pred CCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHH-HhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhh
Confidence 111000 00122346789999999999999999999 899999999999999888999999999999999999999
Q ss_pred hhCCeeecCcceEEeecCCCCCccccccc----------------------------------------cc-ccccC---
Q 016188 178 EMNGVFCSTRPMRISAATPKKTTGFQQQY----------------------------------------AA-VKATY--- 213 (394)
Q Consensus 178 ~l~~~~~~g~~l~v~~a~~~~~~~~~~~~----------------------------------------~~-~~~~~--- 213 (394)
.||-..+.|..|+|-.+......-..... .. .....
T Consensus 271 sMNlFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~ 350 (544)
T KOG0124|consen 271 SMNLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLG 350 (544)
T ss_pred hcchhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCC
Confidence 99999999999999776443321111000 00 00000
Q ss_pred ----------------------CC-CCCCCCcccC------C-----------------------------C--------
Q 016188 214 ----------------------PV-AAYTTPVQVF------P-----------------------------A-------- 227 (394)
Q Consensus 214 ----------------------~~-~~~~~~~~~~------~-----------------------------~-------- 227 (394)
|. .....+.... + .
T Consensus 351 ~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~ 430 (544)
T KOG0124|consen 351 TLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGS 430 (544)
T ss_pred CccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCc
Confidence 00 0000000000 0 0
Q ss_pred ----------CCCCCccEEEEcCC--CCCCC---HHHHHHHhcccCCeEEEEEeCCC----------cEEEEEeCchHHH
Q 016188 228 ----------DNDITNTTIFVGNL--DPNVT---EEELKQTFLHFGEIVNVKIPMGR----------GCGFVQFAARASA 282 (394)
Q Consensus 228 ----------~~~~~~~~l~v~nl--~~~~t---~~~l~~~F~~~G~i~~~~i~~~~----------g~~fV~f~~~~~a 282 (394)
-....++.|.++|+ |.+++ +.+|++.|.+||.|.++.|...+ ---||+|+...++
T Consensus 431 sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~ 510 (544)
T KOG0124|consen 431 SARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASET 510 (544)
T ss_pred cHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHH
Confidence 01223456778887 33443 46788999999999999997643 2469999999999
Q ss_pred HHHHHHhCCceeCcEEEEEEEc
Q 016188 283 EEAILRMQGHMIGQQQVRISWG 304 (394)
Q Consensus 283 ~~a~~~l~g~~~~g~~l~v~~a 304 (394)
.+|+.+|+|+.|+|+++..+.-
T Consensus 511 ~rak~ALdGRfFgGr~VvAE~Y 532 (544)
T KOG0124|consen 511 HRAKQALDGRFFGGRKVVAEVY 532 (544)
T ss_pred HHHHHhhccceecCceeehhhh
Confidence 9999999999999999876643
No 26
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=6e-28 Score=220.07 Aligned_cols=263 Identities=26% Similarity=0.422 Sum_probs=194.0
Q ss_pred cceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeeeecc
Q 016188 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWA 102 (394)
Q Consensus 23 ~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~~~~ 102 (394)
.-+|.|+|||+.|.+.+|+.+|+.||.|.+|.|++.. +|+-.|||||+|....+|..|++.+|+..|.|+ .|-+.|+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR--~VAVDWA 193 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGR--PVAVDWA 193 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCc--eeEEeee
Confidence 5689999999999999999999999999999999776 777779999999999999999999999999994 4555554
Q ss_pred cCC----------------------------------------------------------------------CCC---C
Q 016188 103 SFG----------------------------------------------------------------------IGE---K 109 (394)
Q Consensus 103 ~~~----------------------------------------------------------------------~~~---~ 109 (394)
-.. ..+ .
T Consensus 194 V~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~ 273 (678)
T KOG0127|consen 194 VDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGK 273 (678)
T ss_pred cccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhcccccccccccccccccccc
Confidence 200 000 0
Q ss_pred ------------CCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHH
Q 016188 110 ------------RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMT 177 (394)
Q Consensus 110 ------------~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~ 177 (394)
........+|||+|||+++|+++|.++| ++||+|..+.++.++.|++++|.|||.|.+..+|..||.
T Consensus 274 ~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~f-skFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~ 352 (678)
T KOG0127|consen 274 KESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHF-SKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIE 352 (678)
T ss_pred CcccchhccccccccccccceEEEecCCccccHHHHHHHH-HhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHH
Confidence 0000113689999999999999999999 899999999999999999999999999999999999998
Q ss_pred hh-----CC-eeecCcceEEeecCCCCCccccccccccc-----------------ccCCC-CCCCC-------------
Q 016188 178 EM-----NG-VFCSTRPMRISAATPKKTTGFQQQYAAVK-----------------ATYPV-AAYTT------------- 220 (394)
Q Consensus 178 ~l-----~~-~~~~g~~l~v~~a~~~~~~~~~~~~~~~~-----------------~~~~~-~~~~~------------- 220 (394)
.. .+ ..+.||.|.|..+..+.....-....... ..++. .+.+.
T Consensus 353 ~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG~I~~gt~aAeglS~~Dm~kRer~~~~k 432 (678)
T KOG0127|consen 353 AASPASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREGLIRDGTPAAEGLSATDMAKRERIAERK 432 (678)
T ss_pred hcCccCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccCccccCChhhcccchhhHHHHHHHHHHH
Confidence 65 23 66799999999987765532211100000 00000 00000
Q ss_pred CcccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcc----c-CCeEE-EEEeC---------CCcEEEEEeCchHHHHHH
Q 016188 221 PVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLH----F-GEIVN-VKIPM---------GRGCGFVQFAARASAEEA 285 (394)
Q Consensus 221 ~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~----~-G~i~~-~~i~~---------~~g~~fV~f~~~~~a~~a 285 (394)
.....++......++|.|.|||..++...|..+... | +.+.. ++.+. +.|++|+.|..++.|.+|
T Consensus 433 ~k~lknpnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~~~le~~~k~~s~g~aF~~f~EhEhalka 512 (678)
T KOG0127|consen 433 RKKLKNPNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQIKFLEEEKKNYSEGYAFVGFTEHEHALKA 512 (678)
T ss_pred HHhhcCCceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhhhhHHhhhhcccccccccCccHHHHHHHh
Confidence 000012223344578889999999999999988653 2 22222 22222 269999999999999999
Q ss_pred HHHh
Q 016188 286 ILRM 289 (394)
Q Consensus 286 ~~~l 289 (394)
+..+
T Consensus 513 lk~~ 516 (678)
T KOG0127|consen 513 LKVL 516 (678)
T ss_pred hhcc
Confidence 7765
No 27
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.95 E-value=1.6e-27 Score=224.26 Aligned_cols=260 Identities=20% Similarity=0.347 Sum_probs=205.7
Q ss_pred CcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceee
Q 016188 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (394)
Q Consensus 19 ~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~ 98 (394)
..+..+.|+|+|||..+..++|..+|..||+|..|.+.+.. .-++|+|.+..+|..|++.|..+.+.... +.
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G------~~aiv~fl~p~eAr~Afrklaysr~k~~p--ly 452 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGG------TGAIVEFLNPLEARKAFRKLAYSRFKSAP--LY 452 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecCccc------ceeeeeecCccchHHHHHHhchhhhccCc--cc
Confidence 44556789999999999999999999999999999666432 35999999999999999998876554422 22
Q ss_pred eecccCC-----------------C-----C-----------CCCC------------CCCCcceEEEcCCCCCCCHHHH
Q 016188 99 LNWASFG-----------------I-----G-----------EKRP------------DAGPEHSIFVGDLAPDVTDYLL 133 (394)
Q Consensus 99 ~~~~~~~-----------------~-----~-----------~~~~------------~~~~~~~l~v~nlp~~~t~~~l 133 (394)
+.|+... . . ..+. .....++|||.||+++.+.++|
T Consensus 453 le~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l 532 (725)
T KOG0110|consen 453 LEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDL 532 (725)
T ss_pred cccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHH
Confidence 2221100 0 0 0000 0011234999999999999999
Q ss_pred HHHHHhhCCCeeEEEEeeCCCC---CCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeecCCCCCccccccccccc
Q 016188 134 QETFRSQYPSVRGAKVVTDPNT---GRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQQYAAVK 210 (394)
Q Consensus 134 ~~~f~~~~G~v~~v~i~~~~~t---g~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~ 210 (394)
...| +..|.|..+.|...++. -.|.|||||+|.+.++|+.|++.|+|+.++|+.|.|.++..+.......
T Consensus 533 ~~~F-~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK------ 605 (725)
T KOG0110|consen 533 EDLF-SKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGK------ 605 (725)
T ss_pred HHHH-HhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCcccccccc------
Confidence 9999 89999999988876542 1367999999999999999999999999999999999997332211110
Q ss_pred ccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEeCchHHHHH
Q 016188 211 ATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEE 284 (394)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~------~g~~fV~f~~~~~a~~ 284 (394)
........++|+|.|||+..+..+|+++|..||.|.+|+|++. +|||||+|-++.+|.+
T Consensus 606 ---------------~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~n 670 (725)
T KOG0110|consen 606 ---------------KKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKN 670 (725)
T ss_pred ---------------ccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHH
Confidence 0011122579999999999999999999999999999999874 7999999999999999
Q ss_pred HHHHhCCceeCcEEEEEEEcccCC
Q 016188 285 AILRMQGHMIGQQQVRISWGRKQD 308 (394)
Q Consensus 285 a~~~l~g~~~~g~~l~v~~a~~~~ 308 (394)
|+.+|..+.+-||+|.++||+...
T Consensus 671 A~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 671 AFDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred HHHhhcccceechhhheehhccch
Confidence 999999889999999999998543
No 28
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=4.4e-27 Score=228.74 Aligned_cols=173 Identities=28% Similarity=0.486 Sum_probs=148.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEee
Q 016188 114 GPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISA 193 (394)
Q Consensus 114 ~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~ 193 (394)
...++|||+|||..+++++|+++| +.||.|.+|.++.++.+++++|||||+|.+.++|.+|+ .|++..+.|+.|.|..
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F-~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFF-SKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIVQS 164 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHH-HhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEEee
Confidence 457899999999999999999999 89999999999999999999999999999999999999 6999999999999987
Q ss_pred cCCCCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-----
Q 016188 194 ATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG----- 268 (394)
Q Consensus 194 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~----- 268 (394)
+............ . ........++|||+|||..+++++|+++|++||.|..|.+..+
T Consensus 165 ~~~~~~~~~~~~~-------~-----------~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~ 226 (457)
T TIGR01622 165 SQAEKNRAAKAAT-------H-----------QPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGR 226 (457)
T ss_pred cchhhhhhhhccc-------c-----------cCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCc
Confidence 6543222110000 0 0001123689999999999999999999999999999999853
Q ss_pred -CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEccc
Q 016188 269 -RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRK 306 (394)
Q Consensus 269 -~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 306 (394)
+|||||+|.+.++|.+|+..|||..|.|+.|+|.|+..
T Consensus 227 ~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 227 SKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred cceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 68999999999999999999999999999999999873
No 29
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.94 E-value=5.1e-25 Score=195.81 Aligned_cols=167 Identities=19% Similarity=0.319 Sum_probs=136.6
Q ss_pred cCCcceEEEcCCCCcCCHHHHHHHH-hhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceee
Q 016188 20 LEEVRTLWIGDLQYWFDENYLSSCF-AHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (394)
Q Consensus 20 ~~~~~~v~V~nLp~~~~e~~l~~~f-~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~ 98 (394)
....|.+||.|||++..+.+|+++| ++.|.|+-|.+..|. +|+++++|.|+|+++|.+++|++.||...+.++.+.++
T Consensus 41 ~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vK 119 (608)
T KOG4212|consen 41 AARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVK 119 (608)
T ss_pred ccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEe
Confidence 3445669999999999999999999 667899999999998 89999999999999999999999999999999877665
Q ss_pred eeccc------------------------------------------CCCCC----------------------------
Q 016188 99 LNWAS------------------------------------------FGIGE---------------------------- 108 (394)
Q Consensus 99 ~~~~~------------------------------------------~~~~~---------------------------- 108 (394)
-.... ....+
T Consensus 120 Ed~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl 199 (608)
T KOG4212|consen 120 EDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGL 199 (608)
T ss_pred ccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccc
Confidence 52221 00000
Q ss_pred --------CCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhC
Q 016188 109 --------KRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMN 180 (394)
Q Consensus 109 --------~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~ 180 (394)
..-..+.+.++||.||...+..+.|.+.| .-.|.|..+.+-.|+. |.++|+|.++|.++-+|..||..++
T Consensus 200 ~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvf-gmAGkv~~vdf~idKe-G~s~G~~vi~y~hpveavqaIsml~ 277 (608)
T KOG4212|consen 200 SASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVF-GMAGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISMLD 277 (608)
T ss_pred hhhhhhhccCCCCCccceeeeeccccccchHHHHHHh-ccceeeeeeceeeccc-cccCCeeEEEecchHHHHHHHHhhc
Confidence 00011235679999999999999999999 8999999999999976 7999999999999999999998888
Q ss_pred CeeecCcce
Q 016188 181 GVFCSTRPM 189 (394)
Q Consensus 181 ~~~~~g~~l 189 (394)
+.-+..++.
T Consensus 278 ~~g~~~~~~ 286 (608)
T KOG4212|consen 278 RQGLFDRRM 286 (608)
T ss_pred cCCCccccc
Confidence 644444433
No 30
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=3.6e-26 Score=190.17 Aligned_cols=165 Identities=28% Similarity=0.553 Sum_probs=149.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEe
Q 016188 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRIS 192 (394)
Q Consensus 113 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~ 192 (394)
......|.|.-||..+|++||+.+| +..|+|++|++++|+.+|.+.||+||.|.+++||++|+..|||..+..+.|+|+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF-~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLF-GSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHh-hcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 3456789999999999999999999 899999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC----
Q 016188 193 AATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG---- 268 (394)
Q Consensus 193 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~---- 268 (394)
++.+.... .....|||++||..+|..+|.++|++||.|..-+|..|
T Consensus 117 yARPSs~~------------------------------Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg 166 (360)
T KOG0145|consen 117 YARPSSDS------------------------------IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTG 166 (360)
T ss_pred eccCChhh------------------------------hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccc
Confidence 99876543 23467999999999999999999999999988888764
Q ss_pred --CcEEEEEeCchHHHHHHHHHhCCceeCc--EEEEEEEcccCC
Q 016188 269 --RGCGFVQFAARASAEEAILRMQGHMIGQ--QQVRISWGRKQD 308 (394)
Q Consensus 269 --~g~~fV~f~~~~~a~~a~~~l~g~~~~g--~~l~v~~a~~~~ 308 (394)
||.+||.|+..++|+.||+.|||..-.| .+|.|+||..+.
T Consensus 167 ~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPs 210 (360)
T KOG0145|consen 167 LSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPS 210 (360)
T ss_pred eecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcc
Confidence 8999999999999999999999998555 489999998653
No 31
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.93 E-value=5.3e-24 Score=192.92 Aligned_cols=277 Identities=18% Similarity=0.241 Sum_probs=188.5
Q ss_pred CcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceee
Q 016188 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (394)
Q Consensus 19 ~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~ 98 (394)
..++...|.+++|||+||++||+++|+.++ |+++++.+. +|+..|-|||+|.++|++++|+++ +...+..+-+.|-
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf 81 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVF 81 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEE
Confidence 445667899999999999999999999984 788777665 699999999999999999999975 6666655443332
Q ss_pred ee------cccCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeE-EEEeeCCCCCCCccEEEEEeCCHHH
Q 016188 99 LN------WASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRG-AKVVTDPNTGRSKGYGFVKFLDENE 171 (394)
Q Consensus 99 ~~------~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~-v~i~~~~~tg~~~g~afV~f~~~e~ 171 (394)
-. |...... .........|.+++||+.+|+++|.++| +-.-.|.. +.++.++ .+++.|-|||.|++.+.
T Consensus 82 ~~~~~e~d~~~~~~g--~~s~~~d~vVRLRGLPfscte~dI~~FF-aGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ 157 (510)
T KOG4211|consen 82 TAGGAEADWVMRPGG--PNSSANDGVVRLRGLPFSCTEEDIVEFF-AGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQES 157 (510)
T ss_pred ccCCccccccccCCC--CCCCCCCceEEecCCCccCcHHHHHHHh-cCCcccccceeeeccC-CCCcccceEEEecCHHH
Confidence 21 1111111 1112356679999999999999999999 66655555 4455554 48899999999999999
Q ss_pred HHHHHHhhCCeeecCcceEEeecCCCCCcccc----------ccccc---ccc--------------c------------
Q 016188 172 RNRAMTEMNGVFCSTRPMRISAATPKKTTGFQ----------QQYAA---VKA--------------T------------ 212 (394)
Q Consensus 172 a~~ai~~l~~~~~~g~~l~v~~a~~~~~~~~~----------~~~~~---~~~--------------~------------ 212 (394)
|+.|+ .-|...+..|.|.|..+......... ..... ... +
T Consensus 158 ae~Al-~rhre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~ 236 (510)
T KOG4211|consen 158 AEIAL-GRHRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGF 236 (510)
T ss_pred HHHHH-HHHHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCcccc
Confidence 99999 55777788888888766432111110 00000 000 0
Q ss_pred ------CC---CCC------CCCCc----ccCC-----CCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCe-EEEEEeC
Q 016188 213 ------YP---VAA------YTTPV----QVFP-----ADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEI-VNVKIPM 267 (394)
Q Consensus 213 ------~~---~~~------~~~~~----~~~~-----~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i-~~~~i~~ 267 (394)
.. ... ...+. .... .........++.++||...++.++..+|+..-.+ ..|.|-.
T Consensus 237 ~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~~v~i~ig~ 316 (510)
T KOG4211|consen 237 SRYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPYRVHIEIGP 316 (510)
T ss_pred ccCccccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCceeEEEEeCC
Confidence 00 000 00000 0000 0111122678899999999999999999987555 3344443
Q ss_pred C---CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcc
Q 016188 268 G---RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (394)
Q Consensus 268 ~---~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 305 (394)
+ .|-|+|+|.|.++|..|+. -++..+..+.|++....
T Consensus 317 dGr~TGEAdveF~t~edav~Ams-kd~anm~hrYVElFln~ 356 (510)
T KOG4211|consen 317 DGRATGEADVEFATGEDAVGAMG-KDGANMGHRYVELFLNG 356 (510)
T ss_pred CCccCCcceeecccchhhHhhhc-cCCcccCcceeeecccC
Confidence 3 5899999999999999864 36677888988887654
No 32
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=1.7e-24 Score=193.40 Aligned_cols=172 Identities=21% Similarity=0.316 Sum_probs=151.0
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHhhcCC-ceEEEEeecCCC-CCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceee
Q 016188 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGE-VVSIKIIRNKIT-GQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (394)
Q Consensus 21 ~~~~~v~V~nLp~~~~e~~l~~~f~~~G~-v~~v~i~~~~~~-g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~ 98 (394)
-+.++|||+|||+..+++||.+-|++.++ |++|.+..+..+ .+++|||||+|.+...|..|.+.|-...|.-....+.
T Consensus 162 van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~t 241 (506)
T KOG0117|consen 162 VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAIT 241 (506)
T ss_pred eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcce
Confidence 35588999999999999999999999987 888888887754 4789999999999999999999988777766668899
Q ss_pred eecccCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHh
Q 016188 99 LNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTE 178 (394)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~ 178 (394)
|+|+..........-..-..|||+||+.++|+|.|++.| +.||.|+.|+.++| ||||+|.+.++|.+|++.
T Consensus 242 VdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F-~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~ 312 (506)
T KOG0117|consen 242 VDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLF-NEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKE 312 (506)
T ss_pred eeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHH-HhccceEEeecccc--------eeEEeecchHHHHHHHHH
Confidence 999987655544434445679999999999999999999 89999999988866 999999999999999999
Q ss_pred hCCeeecCcceEEeecCCCCCcc
Q 016188 179 MNGVFCSTRPMRISAATPKKTTG 201 (394)
Q Consensus 179 l~~~~~~g~~l~v~~a~~~~~~~ 201 (394)
+|+.+|+|..|.|..|.+.....
T Consensus 313 ~ngkeldG~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 313 TNGKELDGSPIEVTLAKPVDKKK 335 (506)
T ss_pred hcCceecCceEEEEecCChhhhc
Confidence 99999999999999998876543
No 33
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.93 E-value=1.1e-25 Score=178.05 Aligned_cols=174 Identities=32% Similarity=0.573 Sum_probs=152.4
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeeee
Q 016188 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLN 100 (394)
Q Consensus 21 ~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~~ 100 (394)
....+|||+||+..++++-|.++|-+.|+|+++.+.+++.+...+|||||+|.++|+|+-|++.||..+|.++.+++ .
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv--~ 84 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRV--N 84 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEE--E
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999965544 4
Q ss_pred cccCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeE-EEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhh
Q 016188 101 WASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRG-AKVVTDPNTGRSKGYGFVKFLDENERNRAMTEM 179 (394)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~-v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l 179 (394)
.+.. . ........+|||+||.+++++..|.+.| +.||.+.. -.++++++||.++|++||.|.+.|.+.+|+..+
T Consensus 85 kas~--~--~~nl~vganlfvgNLd~~vDe~~L~dtF-safG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ 159 (203)
T KOG0131|consen 85 KASA--H--QKNLDVGANLFVGNLDPEVDEKLLYDTF-SAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSM 159 (203)
T ss_pred eccc--c--cccccccccccccccCcchhHHHHHHHH-HhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHh
Confidence 4431 1 1112224789999999999999999999 89998665 488999999999999999999999999999999
Q ss_pred CCeeecCcceEEeecCCCCCcc
Q 016188 180 NGVFCSTRPMRISAATPKKTTG 201 (394)
Q Consensus 180 ~~~~~~g~~l~v~~a~~~~~~~ 201 (394)
+++.+.++++.|.++..+....
T Consensus 160 ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 160 NGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred ccchhcCCceEEEEEEecCCCc
Confidence 9999999999999997665544
No 34
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.93 E-value=2.1e-25 Score=188.68 Aligned_cols=149 Identities=25% Similarity=0.483 Sum_probs=139.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeecCC
Q 016188 117 HSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATP 196 (394)
Q Consensus 117 ~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a~~ 196 (394)
-+|||+|||.++++.+|+.+| ++||.|.+|.|+++ |+||+.++...++.||+.|++-.+.|..|.|+-++.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lF-e~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSks 73 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLF-EQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKS 73 (346)
T ss_pred cchhccCCCcccchHHHHHHH-HhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEeccc
Confidence 369999999999999999999 89999999999986 999999999999999999999999999999998877
Q ss_pred CCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEe
Q 016188 197 KKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQF 276 (394)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f 276 (394)
+.. ..++|+|+||.+.++.++|+..|++||+|.+++|. ++++||.|
T Consensus 74 Ksk--------------------------------~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv--kdy~fvh~ 119 (346)
T KOG0109|consen 74 KSK--------------------------------ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV--KDYAFVHF 119 (346)
T ss_pred cCC--------------------------------CccccccCCCCccccCHHHhhhhcccCCceeeeee--cceeEEEE
Confidence 633 24789999999999999999999999999999999 77999999
Q ss_pred CchHHHHHHHHHhCCceeCcEEEEEEEcccCC
Q 016188 277 AARASAEEAILRMQGHMIGQQQVRISWGRKQD 308 (394)
Q Consensus 277 ~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 308 (394)
+-.++|..|+..|+++++.|++++|.++.++-
T Consensus 120 d~~eda~~air~l~~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 120 DRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred eeccchHHHHhcccccccccceeeeeeecccc
Confidence 99999999999999999999999999988654
No 35
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.93 E-value=3.1e-25 Score=175.39 Aligned_cols=167 Identities=32% Similarity=0.553 Sum_probs=148.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeec
Q 016188 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (394)
Q Consensus 115 ~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a 194 (394)
...+|||+||+..++++.|.++| -+.|+|..+.+.+|+.+...+|||||+|.++|+|+.|+.-|+...+.|++|+|..+
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~-iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELF-IQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHH-HhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 46799999999999999999999 79999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEE-EEeC------
Q 016188 195 TPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNV-KIPM------ 267 (394)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~-~i~~------ 267 (394)
..... ....+..|||+||.+.+++..|.+.|+.||.|.+. +|++
T Consensus 87 s~~~~-----------------------------nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~ 137 (203)
T KOG0131|consen 87 SAHQK-----------------------------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGN 137 (203)
T ss_pred ccccc-----------------------------cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCC
Confidence 72221 11234789999999999999999999999988762 4443
Q ss_pred CCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccCCCCC
Q 016188 268 GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVTG 311 (394)
Q Consensus 268 ~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~~ 311 (394)
.++|+||.|++.+.+.+|+..+||..++.+++.|+++..++..+
T Consensus 138 ~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 138 PKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred CCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCCc
Confidence 26899999999999999999999999999999999999877554
No 36
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.92 E-value=3.5e-24 Score=190.54 Aligned_cols=174 Identities=29% Similarity=0.484 Sum_probs=151.8
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeec
Q 016188 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (394)
Q Consensus 115 ~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a 194 (394)
...+|||++|+|+++++.|+++| +.||+|.++.+++|+.+++++||+||+|.+.+.+.+++ ....+.|+++.|.+..+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf-~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl-~~~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYF-SQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVL-NARTHKLDGRSVEPKRA 82 (311)
T ss_pred CCcceeecCcCccccHHHHHHHh-cccCceeeEEEeccCCCCCcccccceecCCCcchheee-cccccccCCccccceec
Confidence 57899999999999999999999 99999999999999999999999999999999999888 55667899999999999
Q ss_pred CCCCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------
Q 016188 195 TPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------ 268 (394)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~------ 268 (394)
.++...... ......++|||++||.++++++|+++|++||.|.++.++.|
T Consensus 83 v~r~~~~~~------------------------~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~ 138 (311)
T KOG4205|consen 83 VSREDQTKV------------------------GRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRP 138 (311)
T ss_pred cCccccccc------------------------ccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeeccccccc
Confidence 887654321 11125689999999999999999999999999999988765
Q ss_pred CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccCCCCCCCCC
Q 016188 269 RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVTGSVAA 315 (394)
Q Consensus 269 ~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~ 315 (394)
++|+||+|.+.+++.++ ...+.+.|+|+.++|..|.++........
T Consensus 139 rgFgfv~~~~e~sVdkv-~~~~f~~~~gk~vevkrA~pk~~~~~~~~ 184 (311)
T KOG4205|consen 139 RGFGFVTFDSEDSVDKV-TLQKFHDFNGKKVEVKRAIPKEVMQSTKS 184 (311)
T ss_pred ccceeeEecccccccee-cccceeeecCceeeEeeccchhhcccccc
Confidence 79999999999998887 45677889999999999998876655443
No 37
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.91 E-value=2.2e-23 Score=205.59 Aligned_cols=176 Identities=17% Similarity=0.302 Sum_probs=144.5
Q ss_pred cCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeee
Q 016188 20 LEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRL 99 (394)
Q Consensus 20 ~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~ 99 (394)
.+..++|||+|||..+++++|+++|+.||.|..|.++++..+|.++|||||+|.+.++|..|++.|++..|.++.+.|..
T Consensus 292 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~ 371 (509)
T TIGR01642 292 LDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQR 371 (509)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999997665554
Q ss_pred ecccCCCCCC---------------------CCCCCCcceEEEcCCCCCC----------CHHHHHHHHHhhCCCeeEEE
Q 016188 100 NWASFGIGEK---------------------RPDAGPEHSIFVGDLAPDV----------TDYLLQETFRSQYPSVRGAK 148 (394)
Q Consensus 100 ~~~~~~~~~~---------------------~~~~~~~~~l~v~nlp~~~----------t~~~l~~~f~~~~G~v~~v~ 148 (394)
.......... .....+...|+|.|+.... ..++|+++| ++||.|..|.
T Consensus 372 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f-~~~G~v~~v~ 450 (509)
T TIGR01642 372 ACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEF-SKYGPLINIV 450 (509)
T ss_pred CccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHH-HhcCCeeEEE
Confidence 3221110000 0012356778999996421 236899999 8999999999
Q ss_pred EeeC---CCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeecCC
Q 016188 149 VVTD---PNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATP 196 (394)
Q Consensus 149 i~~~---~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a~~ 196 (394)
|+++ ..++...|++||+|.+.++|+.|+..|||..|.|+.|.+.+...
T Consensus 451 i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 451 IPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred eeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 9875 23456789999999999999999999999999999999998754
No 38
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.91 E-value=1.3e-22 Score=179.40 Aligned_cols=284 Identities=18% Similarity=0.246 Sum_probs=195.2
Q ss_pred CCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCcccee
Q 016188 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNF 97 (394)
Q Consensus 18 ~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v 97 (394)
....+++.|.++|||++++|+||..++.+||.|..+++.+.+ ..||++|.++++|...+.......-.-+...+
T Consensus 23 ~~~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGk------nQAflem~d~~sAvtmv~~y~~~~p~lr~~~~ 96 (492)
T KOG1190|consen 23 SMAEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGK------NQAFLEMADEESAVTMVNYYTSVTPVLRGQPI 96 (492)
T ss_pred cccCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccc------hhhhhhhcchhhhhheeecccccCccccCcce
Confidence 355688999999999999999999999999999999988875 58999999999999854332222211111222
Q ss_pred eeeccc------------------------------CCCC---C--CCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCC
Q 016188 98 RLNWAS------------------------------FGIG---E--KRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYP 142 (394)
Q Consensus 98 ~~~~~~------------------------------~~~~---~--~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G 142 (394)
.+.++. .... . ......+-.+++|.++-..++-+-|+..| ++||
T Consensus 97 yiq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvF-S~fG 175 (492)
T KOG1190|consen 97 YIQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVF-SKFG 175 (492)
T ss_pred eehhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHH-hhcc
Confidence 221111 0000 0 00111122357789999999999999999 9999
Q ss_pred CeeEEEEeeCCCCCCCccE-EEEEeCCHHHHHHHHHhhCCeeecC--cceEEeecCCCCCcccccccccccccC---CCC
Q 016188 143 SVRGAKVVTDPNTGRSKGY-GFVKFLDENERNRAMTEMNGVFCST--RPMRISAATPKKTTGFQQQYAAVKATY---PVA 216 (394)
Q Consensus 143 ~v~~v~i~~~~~tg~~~g~-afV~f~~~e~a~~ai~~l~~~~~~g--~~l~v~~a~~~~~~~~~~~~~~~~~~~---~~~ 216 (394)
.|..|.-+.. +.|| |.|.|.+.+.|..|...|+|+.|.+ +.|+|.++........-...+...-+. |..
T Consensus 176 ~VlKIiTF~K-----nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~g 250 (492)
T KOG1190|consen 176 FVLKIITFTK-----NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVG 250 (492)
T ss_pred eeEEEEEEec-----ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCC
Confidence 9998765543 2334 8999999999999999999998843 455555543322211100000000000 000
Q ss_pred -----------------------CCCCCccc-----CCCCCCC--CccEEEEcCCCC-CCCHHHHHHHhcccCCeEEEEE
Q 016188 217 -----------------------AYTTPVQV-----FPADNDI--TNTTIFVGNLDP-NVTEEELKQTFLHFGEIVNVKI 265 (394)
Q Consensus 217 -----------------------~~~~~~~~-----~~~~~~~--~~~~l~v~nl~~-~~t~~~l~~~F~~~G~i~~~~i 265 (394)
....+... ....... .++.|.|.||.. .+|.+.|..+|.-||.|.+|+|
T Consensus 251 d~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVki 330 (492)
T KOG1190|consen 251 DGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKI 330 (492)
T ss_pred ccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEe
Confidence 00000000 0000111 257888999976 7799999999999999999999
Q ss_pred eCC-CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccCCCCCCC
Q 016188 266 PMG-RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVTGSV 313 (394)
Q Consensus 266 ~~~-~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~~~~ 313 (394)
+.+ +..|.|++.+...|+-|++.|+|..+.|++|+|.+++.+...-+.
T Consensus 331 l~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~ 379 (492)
T KOG1190|consen 331 LYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPR 379 (492)
T ss_pred eecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCC
Confidence 886 468999999999999999999999999999999999987765443
No 39
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.91 E-value=1.5e-24 Score=183.52 Aligned_cols=149 Identities=26% Similarity=0.469 Sum_probs=136.3
Q ss_pred eEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeeeecccC
Q 016188 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWASF 104 (394)
Q Consensus 25 ~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~~~~~~ 104 (394)
+|||+|||..+++.+|+.+|++||.|++|.|+++ |+||..+++..|..||..|++-.|.+..++|+-+..
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSks-- 73 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKS-- 73 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEeccc--
Confidence 6999999999999999999999999999999985 899999999999999999999999996555544432
Q ss_pred CCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeee
Q 016188 105 GIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFC 184 (394)
Q Consensus 105 ~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~ 184 (394)
++..+.+|+|+||.+.++..||++.| ++||.|.++.|+++ |+||.|...++|..|++.|++.++
T Consensus 74 -------Ksk~stkl~vgNis~tctn~ElRa~f-e~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~ 137 (346)
T KOG0109|consen 74 -------KSKASTKLHVGNISPTCTNQELRAKF-EKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEF 137 (346)
T ss_pred -------cCCCccccccCCCCccccCHHHhhhh-cccCCceeeeeecc--------eeEEEEeeccchHHHHhccccccc
Confidence 25568899999999999999999999 89999999999976 999999999999999999999999
Q ss_pred cCcceEEeecCCCCC
Q 016188 185 STRPMRISAATPKKT 199 (394)
Q Consensus 185 ~g~~l~v~~a~~~~~ 199 (394)
.|+.++|..++++..
T Consensus 138 ~gk~m~vq~stsrlr 152 (346)
T KOG0109|consen 138 QGKRMHVQLSTSRLR 152 (346)
T ss_pred ccceeeeeeeccccc
Confidence 999999999887654
No 40
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.89 E-value=4.8e-23 Score=183.29 Aligned_cols=175 Identities=26% Similarity=0.420 Sum_probs=150.0
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeeeec
Q 016188 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNW 101 (394)
Q Consensus 22 ~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~~~ 101 (394)
+.++|||++|+|+++++.|+++|.+||.|.+|.+++++.++++++|+||+|++.+.+.+++.. ....|.++.+......
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 789999999999999999999999999999999999999999999999999999999999853 5566777554444443
Q ss_pred ccCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCC
Q 016188 102 ASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNG 181 (394)
Q Consensus 102 ~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~ 181 (394)
+....... .......+|||++||.++++++++++| .+||.|..+.++.|..+.+.+||+||.|.+++++.+++ ...-
T Consensus 84 ~r~~~~~~-~~~~~tkkiFvGG~~~~~~e~~~r~yf-e~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~f 160 (311)
T KOG4205|consen 84 SREDQTKV-GRHLRTKKIFVGGLPPDTTEEDFKDYF-EQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQKF 160 (311)
T ss_pred Cccccccc-ccccceeEEEecCcCCCCchHHHhhhh-hccceeEeeEEeecccccccccceeeEeccccccceec-ccce
Confidence 32221111 111246789999999999999999999 89999999999999999999999999999999999988 6788
Q ss_pred eeecCcceEEeecCCCCCc
Q 016188 182 VFCSTRPMRISAATPKKTT 200 (394)
Q Consensus 182 ~~~~g~~l~v~~a~~~~~~ 200 (394)
+.|.++.+.|..|.++...
T Consensus 161 ~~~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 161 HDFNGKKVEVKRAIPKEVM 179 (311)
T ss_pred eeecCceeeEeeccchhhc
Confidence 8899999999999888654
No 41
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=5.4e-23 Score=171.99 Aligned_cols=195 Identities=27% Similarity=0.461 Sum_probs=155.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeee---cCcceE
Q 016188 114 GPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFC---STRPMR 190 (394)
Q Consensus 114 ~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~---~g~~l~ 190 (394)
...++|||+-|.+.-.|||++.+| ..||+|++|.+.+.+. |.+||++||.|.+..+|..||..|++... ....|.
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf-~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLV 94 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLF-QPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLV 94 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHh-cccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceE
Confidence 357899999999999999999999 8999999999999875 89999999999999999999999998653 456788
Q ss_pred EeecCCCCCccccccc------------------------------------------------------------c---
Q 016188 191 ISAATPKKTTGFQQQY------------------------------------------------------------A--- 207 (394)
Q Consensus 191 v~~a~~~~~~~~~~~~------------------------------------------------------------~--- 207 (394)
|++++..+++..+... .
T Consensus 95 VK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl 174 (371)
T KOG0146|consen 95 VKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGL 174 (371)
T ss_pred EEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccc
Confidence 9998877664321100 0
Q ss_pred cccccCCCCCCC--------------------------------------------------------------------
Q 016188 208 AVKATYPVAAYT-------------------------------------------------------------------- 219 (394)
Q Consensus 208 ~~~~~~~~~~~~-------------------------------------------------------------------- 219 (394)
......+.....
T Consensus 175 ~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~ 254 (371)
T KOG0146|consen 175 AAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYA 254 (371)
T ss_pred ccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHh
Confidence 000000000000
Q ss_pred ---------------CC--cccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEe
Q 016188 220 ---------------TP--VQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQF 276 (394)
Q Consensus 220 ---------------~~--~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~------~g~~fV~f 276 (394)
.+ .-..........|.|||-.||....+.+|.++|-+||.|.+.+++.| |+|+||.|
T Consensus 255 Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSf 334 (371)
T KOG0146|consen 255 AAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSF 334 (371)
T ss_pred hhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEec
Confidence 00 00001225667899999999999999999999999999999999875 69999999
Q ss_pred CchHHHHHHHHHhCCceeCcEEEEEEEcccCCCC
Q 016188 277 AARASAEEAILRMQGHMIGQQQVRISWGRKQDVT 310 (394)
Q Consensus 277 ~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~ 310 (394)
+++.+|+.||.+|||..|+-++|+|.+.++++..
T Consensus 335 DNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkdan 368 (371)
T KOG0146|consen 335 DNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDAN 368 (371)
T ss_pred CCchhHHHHHHHhcchhhhhhhhhhhhcCccccC
Confidence 9999999999999999999999999999988764
No 42
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=6.2e-23 Score=178.74 Aligned_cols=172 Identities=22% Similarity=0.448 Sum_probs=147.9
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeecC
Q 016188 116 EHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAAT 195 (394)
Q Consensus 116 ~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a~ 195 (394)
.++||||.|.+++.|+.|+..| ..||+|+++.+.+|+.|++.+|||||+|+-.|.|..|++.||+..+.||.|+|.+..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF-~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAF-DPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred hHheeeeeeEEEechHHHHhhc-cCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 5689999999999999999999 899999999999999999999999999999999999999999999999999997544
Q ss_pred CCCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------C
Q 016188 196 PKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------R 269 (394)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~------~ 269 (394)
.-.....-.. ...+....-++|||..+.++.+++||+..|+.||+|.+|.+-++ |
T Consensus 192 NmpQAQpiID-------------------~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~Hk 252 (544)
T KOG0124|consen 192 NMPQAQPIID-------------------MVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHK 252 (544)
T ss_pred CCcccchHHH-------------------HHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCcc
Confidence 3322110000 00111122378999999999999999999999999999999764 7
Q ss_pred cEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccC
Q 016188 270 GCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307 (394)
Q Consensus 270 g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 307 (394)
||+||+|.+..+...|+..||-+.++|..|+|-.+-..
T Consensus 253 GyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 253 GYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred ceeeEEeccccchHHHhhhcchhhcccceEecccccCC
Confidence 99999999999999999999999999999999877543
No 43
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.88 E-value=1.8e-20 Score=165.78 Aligned_cols=276 Identities=18% Similarity=0.275 Sum_probs=206.8
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeeeec
Q 016188 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNW 101 (394)
Q Consensus 22 ~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~~~ 101 (394)
.--+++|.|+-..++-|-|+.+|++||.|..|.-+... ..-.|+|+|.+.+.|..|...|+|..|...++++++++
T Consensus 149 ~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Kn----n~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~ 224 (492)
T KOG1190|consen 149 PVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKN----NGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDF 224 (492)
T ss_pred eeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecc----cchhhhhhccchhhHHHHHHhccCCcccCceeEEEeeh
Confidence 44578999999999999999999999998877444332 22459999999999999999999999988888888855
Q ss_pred ccCC--------------------CC------------------------------------CCCCCCCC--cceEEEcC
Q 016188 102 ASFG--------------------IG------------------------------------EKRPDAGP--EHSIFVGD 123 (394)
Q Consensus 102 ~~~~--------------------~~------------------------------------~~~~~~~~--~~~l~v~n 123 (394)
+.-. .. ..+....+ +..|.|.|
T Consensus 225 Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsn 304 (492)
T KOG1190|consen 225 SKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSN 304 (492)
T ss_pred hhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEec
Confidence 5410 00 00001111 35677888
Q ss_pred CCC-CCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeecCCCCCccc
Q 016188 124 LAP-DVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGF 202 (394)
Q Consensus 124 lp~-~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a~~~~~~~~ 202 (394)
|.. .+|.+.|..+| +.||.|..|+|+.++. --|.|.+.+...|+.|++.|+|+.+.|+.|+|.++......-.
T Consensus 305 ln~~~VT~d~LftlF-gvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp 378 (492)
T KOG1190|consen 305 LNEEAVTPDVLFTLF-GVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLP 378 (492)
T ss_pred CchhccchhHHHHHH-hhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCC
Confidence 865 78999999999 9999999999998743 4799999999999999999999999999999999866544332
Q ss_pred ccccccccccCCCCCC-----CCCcccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEE-EE-eCCCcEEEEE
Q 016188 203 QQQYAAVKATYPVAAY-----TTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNV-KI-PMGRGCGFVQ 275 (394)
Q Consensus 203 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~-~i-~~~~g~~fV~ 275 (394)
.....+..-+.+-... ..|........-.++.+|++.|+|.++++|+|+.+|..-|-..+. +. .+++..+.+.
T Consensus 379 ~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q 458 (492)
T KOG1190|consen 379 REGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQ 458 (492)
T ss_pred CCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceeecc
Confidence 2222221111111111 111111112223556799999999999999999999988866554 43 3468999999
Q ss_pred eCchHHHHHHHHHhCCceeCcE-EEEEEEcccC
Q 016188 276 FAARASAEEAILRMQGHMIGQQ-QVRISWGRKQ 307 (394)
Q Consensus 276 f~~~~~a~~a~~~l~g~~~~g~-~l~v~~a~~~ 307 (394)
+.++|+|..|+..+|.+.+++. .|+|+|++..
T Consensus 459 ~~sveeA~~ali~~hnh~lgen~hlRvSFSks~ 491 (492)
T KOG1190|consen 459 LESVEEAIQALIDLHNHYLGENHHLRVSFSKST 491 (492)
T ss_pred cCChhHhhhhccccccccCCCCceEEEEeeccc
Confidence 9999999999999999998755 9999998753
No 44
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.86 E-value=2.4e-21 Score=182.83 Aligned_cols=174 Identities=22% Similarity=0.434 Sum_probs=147.9
Q ss_pred ceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCC----CcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeee
Q 016188 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQ----PEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRL 99 (394)
Q Consensus 24 ~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~----~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~ 99 (394)
++|||.||+++++.++|...|...|.|.+|.|...+ ++. +.|||||+|.+.++|+.|++.|+|+.|.|..+.+++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkk-d~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKK-DPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccc-cccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 349999999999999999999999999999888776 332 559999999999999999999999999997777766
Q ss_pred ecccCC--CCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHH
Q 016188 100 NWASFG--IGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMT 177 (394)
Q Consensus 100 ~~~~~~--~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~ 177 (394)
+..... ...+.......++|+|+|||+..+..+++.+| ..||.|.+|+|+.....+..+|||||+|-+..+|.+|+.
T Consensus 595 S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF-~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~ 673 (725)
T KOG0110|consen 595 SENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLF-TAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFD 673 (725)
T ss_pred ccCccccccccccccccccceeeeeccchHHHHHHHHHHH-hcccceeeeccchhhcchhhccceeeeccCcHHHHHHHH
Confidence 662111 11122223335789999999999999999999 899999999999875556679999999999999999999
Q ss_pred hhCCeeecCcceEEeecCCCCC
Q 016188 178 EMNGVFCSTRPMRISAATPKKT 199 (394)
Q Consensus 178 ~l~~~~~~g~~l~v~~a~~~~~ 199 (394)
+|..+.+.||.|.+.|+.....
T Consensus 674 al~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 674 ALGSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred hhcccceechhhheehhccchH
Confidence 9999999999999999976543
No 45
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.85 E-value=9.7e-19 Score=153.17 Aligned_cols=286 Identities=14% Similarity=0.169 Sum_probs=205.5
Q ss_pred CCCCCCCCCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCC--
Q 016188 11 YHQHHHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGT-- 88 (394)
Q Consensus 11 ~~~~~~~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~-- 88 (394)
..+..++.....+..|.|++|-..++|.||.+.++.||+|.-|..+..+ ..|.|+|++.+.|+.|+...-..
T Consensus 19 ~e~~~dphk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~------r~alvefedi~~akn~Vnfaa~n~i 92 (494)
T KOG1456|consen 19 REDNADPHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK------RQALVEFEDIEGAKNCVNFAADNQI 92 (494)
T ss_pred cccCCCCCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEecccc------ceeeeeeccccchhhheehhccCcc
Confidence 3345667788889999999999999999999999999998777666654 78999999999999999644333
Q ss_pred CCCCccceeeeecccCCCCCCCCCCCCcceEE--EcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEe
Q 016188 89 PMPGTEQNFRLNWASFGIGEKRPDAGPEHSIF--VGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKF 166 (394)
Q Consensus 89 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~--v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f 166 (394)
.+.+...-+..+....-.........++..|. |-|--..+|.+-|..+. ...|.|..|.|++. +| =-|.|+|
T Consensus 93 ~i~gq~Al~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Ic-np~GkVlRIvIfkk--ng---VQAmVEF 166 (494)
T KOG1456|consen 93 YIAGQQALFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTIC-NPQGKVLRIVIFKK--NG---VQAMVEF 166 (494)
T ss_pred cccCchhhcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhc-CCCCceEEEEEEec--cc---eeeEEee
Confidence 33443333332222211111112222333333 35656789999999999 79999999999875 22 3699999
Q ss_pred CCHHHHHHHHHhhCCeee--cCcceEEeecCCCCCccccccccc--------------c-----cccC-------C----
Q 016188 167 LDENERNRAMTEMNGVFC--STRPMRISAATPKKTTGFQQQYAA--------------V-----KATY-------P---- 214 (394)
Q Consensus 167 ~~~e~a~~ai~~l~~~~~--~g~~l~v~~a~~~~~~~~~~~~~~--------------~-----~~~~-------~---- 214 (394)
++.+.|++|.++|||..| .-.+|+|+++.+.+....+..... . .... +
T Consensus 167 dsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~ 246 (494)
T KOG1456|consen 167 DSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRG 246 (494)
T ss_pred chhHHHHHHHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcC
Confidence 999999999999999887 556788888887655332211100 0 0000 0
Q ss_pred -------CCCCCC----Cc-----------ccCCCCCCCCccEEEEcCCCC-CCCHHHHHHHhcccCCeEEEEEeCC-Cc
Q 016188 215 -------VAAYTT----PV-----------QVFPADNDITNTTIFVGNLDP-NVTEEELKQTFLHFGEIVNVKIPMG-RG 270 (394)
Q Consensus 215 -------~~~~~~----~~-----------~~~~~~~~~~~~~l~v~nl~~-~~t~~~l~~~F~~~G~i~~~~i~~~-~g 270 (394)
...... ++ ....+......+.+.|.+|.. .+.-+.|..+|..||.|.+|++++. .|
T Consensus 247 G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~g 326 (494)
T KOG1456|consen 247 GGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPG 326 (494)
T ss_pred CCCCCCcccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccc
Confidence 000000 00 001123345678899999987 5688999999999999999999986 58
Q ss_pred EEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccCC
Q 016188 271 CGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308 (394)
Q Consensus 271 ~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 308 (394)
.|.|++.|..+.++|+..||+..+-|.+|.|..++..-
T Consensus 327 tamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~ 364 (494)
T KOG1456|consen 327 TAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNF 364 (494)
T ss_pred eeEEEcCcHHHHHHHHHHhccCccccceEEEeeccccc
Confidence 99999999999999999999999999999999887543
No 46
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=3.5e-20 Score=155.24 Aligned_cols=176 Identities=25% Similarity=0.470 Sum_probs=148.3
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCC-CCCccceeeee
Q 016188 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTP-MPGTEQNFRLN 100 (394)
Q Consensus 22 ~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~-~~~~~~~v~~~ 100 (394)
+.|+|||+.|.+.-+|||++.+|..||+|++|.+.+.. +|.++|||||.|.+.-+|..||..|+|.. +.|....+.+.
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 67889999999999999999999999999999999998 89999999999999999999999999854 44543333331
Q ss_pred ccc-----------------------------------------------------------------------------
Q 016188 101 WAS----------------------------------------------------------------------------- 103 (394)
Q Consensus 101 ~~~----------------------------------------------------------------------------- 103 (394)
++.
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence 111
Q ss_pred --------------------------------------------------------------------------------
Q 016188 104 -------------------------------------------------------------------------------- 103 (394)
Q Consensus 104 -------------------------------------------------------------------------------- 103 (394)
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence
Q ss_pred ----C---CC---------CCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeC
Q 016188 104 ----F---GI---------GEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFL 167 (394)
Q Consensus 104 ----~---~~---------~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~ 167 (394)
+ .. .....+..+.++|||.-||.+..+.||..+| -.||.|.+.++..|+.|..+|=|+||.|.
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF-~PFGhivSaKVFvDRATNQSKCFGFVSfD 335 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMF-LPFGHIVSAKVFVDRATNQSKCFGFVSFD 335 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHh-ccccceeeeeeeehhccccccceeeEecC
Confidence 0 00 0000122446799999999999999999999 79999999999999999999999999999
Q ss_pred CHHHHHHHHHhhCCeeecCcceEEeecCCCCC
Q 016188 168 DENERNRAMTEMNGVFCSTRPMRISAATPKKT 199 (394)
Q Consensus 168 ~~e~a~~ai~~l~~~~~~g~~l~v~~a~~~~~ 199 (394)
+..+|+.||.+|||..|.=++|+|....++..
T Consensus 336 Np~SaQaAIqAMNGFQIGMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 336 NPASAQAAIQAMNGFQIGMKRLKVQLKRPKDA 367 (371)
T ss_pred CchhHHHHHHHhcchhhhhhhhhhhhcCcccc
Confidence 99999999999999999989998877666543
No 47
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=8.2e-20 Score=170.39 Aligned_cols=277 Identities=20% Similarity=0.348 Sum_probs=202.5
Q ss_pred CCCCCcCCcceEEEcCCCCcCCHHHHHHHHhhc-----------CC-ceEEEEeecCCCCCCcceEEEEEcCHHHHHHHH
Q 016188 15 HHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHT-----------GE-VVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82 (394)
Q Consensus 15 ~~~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~-----------G~-v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~ 82 (394)
..+......++++|+++|+.++++.+-.+|..- |+ +..|.+...+ .+||++|.+.++|..|.
T Consensus 167 ~~~~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~------nfa~ie~~s~~~at~~~ 240 (500)
T KOG0120|consen 167 MDSQATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEK------NFAFIEFRSISEATEAM 240 (500)
T ss_pred cCcchhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccc------cceeEEecCCCchhhhh
Confidence 344566677899999999999999999888664 33 6667665554 89999999999999999
Q ss_pred HHcCCCCCCCccceeeeecccC----------------CCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeE
Q 016188 83 QTYNGTPMPGTEQNFRLNWASF----------------GIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRG 146 (394)
Q Consensus 83 ~~l~~~~~~~~~~~v~~~~~~~----------------~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~ 146 (394)
.+++..+.+....+....... ............++++|++||..+++..+.+.+ +.||.+..
T Consensus 241 -~~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell-~~fg~lk~ 318 (500)
T KOG0120|consen 241 -ALDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELL-DSFGPLKA 318 (500)
T ss_pred -cccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHH-Hhcccchh
Confidence 567777776554443321110 001111122345689999999999999999999 89999999
Q ss_pred EEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeecCCCCCcccccccccccccCCCCCCCCCcccCC
Q 016188 147 AKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFP 226 (394)
Q Consensus 147 v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (394)
..++.+..+|.++||||.+|.+......|++.|||..+.++.+.|..+............. ... ....-.....
T Consensus 319 f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~-----~~~-~~~~i~~~~~ 392 (500)
T KOG0120|consen 319 FRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNI-----SQS-QVPGIPLLMT 392 (500)
T ss_pred heeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCc-----ccc-ccccchhhhc
Confidence 9999999999999999999999999999999999999999999999886654433211110 000 0000000001
Q ss_pred CCCCCCccEEEEcCCCC--CC-CH-------HHHHHHhcccCCeEEEEEeCC---------CcEEEEEeCchHHHHHHHH
Q 016188 227 ADNDITNTTIFVGNLDP--NV-TE-------EELKQTFLHFGEIVNVKIPMG---------RGCGFVQFAARASAEEAIL 287 (394)
Q Consensus 227 ~~~~~~~~~l~v~nl~~--~~-t~-------~~l~~~F~~~G~i~~~~i~~~---------~g~~fV~f~~~~~a~~a~~ 287 (394)
+........|.+.|+=. .. ++ ++|+..|.+||.|.+|.|+++ -|..||+|.+.+++++|.+
T Consensus 393 q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~ 472 (500)
T KOG0120|consen 393 QMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAME 472 (500)
T ss_pred ccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHH
Confidence 22233344454444421 11 22 556677889999999999875 3789999999999999999
Q ss_pred HhCCceeCcEEEEEEEcc
Q 016188 288 RMQGHMIGQQQVRISWGR 305 (394)
Q Consensus 288 ~l~g~~~~g~~l~v~~a~ 305 (394)
+|+|.++.||.|..+|-.
T Consensus 473 ~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 473 ELTGRKFANRTVVASYYD 490 (500)
T ss_pred HccCceeCCcEEEEEecC
Confidence 999999999999998765
No 48
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.82 E-value=1.1e-20 Score=173.70 Aligned_cols=175 Identities=26% Similarity=0.415 Sum_probs=145.9
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeecC
Q 016188 116 EHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAAT 195 (394)
Q Consensus 116 ~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a~ 195 (394)
-+++|+--|+...++-+|.++| +.+|.|.+|.++.|+.+++++|.+||+|.+.+.+..|| .|.|..+.|.+|.|+...
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efF-s~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFF-SIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLSE 256 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHH-HhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecccH
Confidence 4678888888889999999999 99999999999999999999999999999999999999 899999999999998765
Q ss_pred CCCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------C
Q 016188 196 PKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------R 269 (394)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~------~ 269 (394)
..+.... . ..+.. .......+-..|+|+||.+++++++|+.+|++||.|..|.+.++ +
T Consensus 257 aeknr~a-~-------~s~a~--------~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~sk 320 (549)
T KOG0147|consen 257 AEKNRAA-N-------ASPAL--------QGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSK 320 (549)
T ss_pred HHHHHHH-h-------ccccc--------cccccccchhhhhhcccccCchHHHHhhhccCcccceeeeecccccccccc
Confidence 4433210 0 00000 00001111233899999999999999999999999999999876 7
Q ss_pred cEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccCC
Q 016188 270 GCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308 (394)
Q Consensus 270 g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 308 (394)
||+||+|.+.++|.+|++.|||.+|.|+.|+|.....+-
T Consensus 321 gfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 321 GFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred CcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeec
Confidence 999999999999999999999999999999998776443
No 49
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.82 E-value=4e-17 Score=143.16 Aligned_cols=278 Identities=18% Similarity=0.190 Sum_probs=207.8
Q ss_pred CcCCcceEEEcCC--CCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccce
Q 016188 19 TLEEVRTLWIGDL--QYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQN 96 (394)
Q Consensus 19 ~~~~~~~v~V~nL--p~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~ 96 (394)
+....+.|.+.=| -+.+|-+-|..++...|+|++|.|++.. --.|.|||++.+.|++|.+.|||..|...+++
T Consensus 116 s~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkn-----gVQAmVEFdsv~~AqrAk~alNGADIYsGCCT 190 (494)
T KOG1456|consen 116 SATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKN-----GVQAMVEFDSVEVAQRAKAALNGADIYSGCCT 190 (494)
T ss_pred CCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEecc-----ceeeEEeechhHHHHHHHhhccccccccccee
Confidence 3344445555444 4568999999999999999999888752 35899999999999999999999999888888
Q ss_pred eeeecccCCCC---------------------------------------------------------------------
Q 016188 97 FRLNWASFGIG--------------------------------------------------------------------- 107 (394)
Q Consensus 97 v~~~~~~~~~~--------------------------------------------------------------------- 107 (394)
+++.++++...
T Consensus 191 LKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~ 270 (494)
T KOG1456|consen 191 LKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRD 270 (494)
T ss_pred EEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCcc
Confidence 88866651000
Q ss_pred --------CCCCCCCCcceEEEcCCCCC-CCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHh
Q 016188 108 --------EKRPDAGPEHSIFVGDLAPD-VTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTE 178 (394)
Q Consensus 108 --------~~~~~~~~~~~l~v~nlp~~-~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~ 178 (394)
..+....+...++|.+|... +.-+.|.++| ..||.|+.|++++.+ .|.|.|++.+..++++|+..
T Consensus 271 ~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~-ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~h 344 (494)
T KOG1456|consen 271 GYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLF-CLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTH 344 (494)
T ss_pred ccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhh-hhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHH
Confidence 00011123457899999874 5669999999 999999999999874 46899999999999999999
Q ss_pred hCCeeecCcceEEeecCCCCCccccccccc-ccc------cCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCCCHHHHH
Q 016188 179 MNGVFCSTRPMRISAATPKKTTGFQQQYAA-VKA------TYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELK 251 (394)
Q Consensus 179 l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~ 251 (394)
||+..+.|.+|.|..+........+..... ... .+-......+.+........+++.|..-|.|..+||+.|.
T Consensus 345 Lnn~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~ 424 (494)
T KOG1456|consen 345 LNNIPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLI 424 (494)
T ss_pred hccCccccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHH
Confidence 999999999999988765544333221100 000 0001112223344445556678999999999999999999
Q ss_pred HHhcccC-CeEEEEEeCC----CcEEEEEeCchHHHHHHHHHhCCceeCcE------EEEEEEcccC
Q 016188 252 QTFLHFG-EIVNVKIPMG----RGCGFVQFAARASAEEAILRMQGHMIGQQ------QVRISWGRKQ 307 (394)
Q Consensus 252 ~~F~~~G-~i~~~~i~~~----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~------~l~v~~a~~~ 307 (394)
++|...+ .-.+++|+.. ...+.++|++.++|..||..||...|.+. .|+++|+.++
T Consensus 425 ~i~nek~v~~~svkvFp~kserSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts~ 491 (494)
T KOG1456|consen 425 GICNEKDVPPTSVKVFPLKSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTSK 491 (494)
T ss_pred HHhhhcCCCcceEEeecccccccccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeecccc
Confidence 9997665 3567777664 35789999999999999999999888764 6777777655
No 50
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.80 E-value=3.7e-18 Score=141.08 Aligned_cols=186 Identities=22% Similarity=0.361 Sum_probs=148.9
Q ss_pred CcceEEEcCCCCCCCHHHHHH----HHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceE
Q 016188 115 PEHSIFVGDLAPDVTDYLLQE----TFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190 (394)
Q Consensus 115 ~~~~l~v~nlp~~~t~~~l~~----~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~ 190 (394)
++.+|||.||...+..++|++ +| ++||.|.+|.... |.+.||-|||.|.+.+.|..|+++|+|..+.|+.++
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LF-sqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLF-SQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHH-HhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 455999999999999999888 99 9999999998876 467999999999999999999999999999999999
Q ss_pred EeecCCCCCcccccccccccc------------cCCCCC---------CCCCcccCCCCCCCCccEEEEcCCCCCCCHHH
Q 016188 191 ISAATPKKTTGFQQQYAAVKA------------TYPVAA---------YTTPVQVFPADNDITNTTIFVGNLDPNVTEEE 249 (394)
Q Consensus 191 v~~a~~~~~~~~~~~~~~~~~------------~~~~~~---------~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~ 249 (394)
+.+|..+.....+........ ..+... ...+... ......+...+|+.|||..++.+.
T Consensus 84 iqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~-~~~~~ppn~ilf~~niP~es~~e~ 162 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPF-LAQMAPPNNILFLTNIPSESESEM 162 (221)
T ss_pred eecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCc-cccCCCCceEEEEecCCcchhHHH
Confidence 999988766544422100000 000000 0001111 133356678999999999999999
Q ss_pred HHHHhcccCCeEEEEEeCC-CcEEEEEeCchHHHHHHHHHhCCceeC-cEEEEEEEcc
Q 016188 250 LKQTFLHFGEIVNVKIPMG-RGCGFVQFAARASAEEAILRMQGHMIG-QQQVRISWGR 305 (394)
Q Consensus 250 l~~~F~~~G~i~~~~i~~~-~g~~fV~f~~~~~a~~a~~~l~g~~~~-g~~l~v~~a~ 305 (394)
|..+|++|.....+++... ++.|||+|.+...|..|...+.+..|. ...++|.+++
T Consensus 163 l~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 163 LSDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 9999999999999999875 689999999999999999999999886 8888888775
No 51
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=1.3e-18 Score=138.15 Aligned_cols=155 Identities=20% Similarity=0.305 Sum_probs=126.9
Q ss_pred CcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceee
Q 016188 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (394)
Q Consensus 19 ~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~ 98 (394)
+.+.+++|||+|||.++.+.||+++|-+||.|.+|.+.... ....||||+|++..+|+.||..-+|-.+.+..+.|+
T Consensus 2 ~gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVE 78 (241)
T KOG0105|consen 2 SGRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVE 78 (241)
T ss_pred CCcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEE
Confidence 34677999999999999999999999999999999876543 346899999999999999999989999999655555
Q ss_pred eecccCCCCCC-------------------CCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCc
Q 016188 99 LNWASFGIGEK-------------------RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSK 159 (394)
Q Consensus 99 ~~~~~~~~~~~-------------------~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~ 159 (394)
+.......... .+.......|.|.+||++-+..+|++++ ...|.|....+.+|
T Consensus 79 fprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHm-ReaGdvCfadv~rD------- 150 (241)
T KOG0105|consen 79 FPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHM-REAGDVCFADVQRD------- 150 (241)
T ss_pred eccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHH-HhhCCeeeeeeecc-------
Confidence 54332211110 1122335679999999999999999999 68999999988887
Q ss_pred cEEEEEeCCHHHHHHHHHhhCCeee
Q 016188 160 GYGFVKFLDENERNRAMTEMNGVFC 184 (394)
Q Consensus 160 g~afV~f~~~e~a~~ai~~l~~~~~ 184 (394)
|.+.|+|...|+.+.|+++|+...+
T Consensus 151 g~GvV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 151 GVGVVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred cceeeeeeehhhHHHHHHhhccccc
Confidence 4899999999999999999987665
No 52
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.80 E-value=2.5e-18 Score=138.45 Aligned_cols=81 Identities=28% Similarity=0.587 Sum_probs=73.9
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEE
Q 016188 229 NDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRIS 302 (394)
Q Consensus 229 ~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 302 (394)
.....++|||+||+..+++++|+++|++||.|.++.|+.+ ++||||+|.+.++|++|++.||+..|+|+.|+|+
T Consensus 30 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~ 109 (144)
T PLN03134 30 LRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109 (144)
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3445689999999999999999999999999999999864 6999999999999999999999999999999999
Q ss_pred EcccCCC
Q 016188 303 WGRKQDV 309 (394)
Q Consensus 303 ~a~~~~~ 309 (394)
+++.+..
T Consensus 110 ~a~~~~~ 116 (144)
T PLN03134 110 PANDRPS 116 (144)
T ss_pred eCCcCCC
Confidence 9986543
No 53
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.78 E-value=9.3e-18 Score=152.66 Aligned_cols=165 Identities=19% Similarity=0.292 Sum_probs=131.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeecC
Q 016188 116 EHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAAT 195 (394)
Q Consensus 116 ~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a~ 195 (394)
...|.+++|||++|++||+++| +.++ |+.+.+.+ .+|+..|-|||+|.++|++++|+ +++...+..|.|.|..+.
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff-~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Al-kkdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFF-SNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKAL-KKDRESMGHRYIEVFTAG 84 (510)
T ss_pred ceEEEecCCCccccHHHHHHHH-hcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHH-HhhHHHhCCceEEEEccC
Confidence 4567889999999999999999 7776 88765554 46999999999999999999999 678888999999998886
Q ss_pred CCCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEE-EEEeCC-----C
Q 016188 196 PKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVN-VKIPMG-----R 269 (394)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~-~~i~~~-----~ 269 (394)
.......- ....+....+...|.+++||+.||++||.++|+..-.|.+ |.++.+ .
T Consensus 85 ~~e~d~~~-------------------~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~t 145 (510)
T KOG4211|consen 85 GAEADWVM-------------------RPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPT 145 (510)
T ss_pred Cccccccc-------------------cCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcc
Confidence 65432110 0011122245688999999999999999999998866666 334333 4
Q ss_pred cEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcc
Q 016188 270 GCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (394)
Q Consensus 270 g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 305 (394)
|-|||+|++.+.|++|+.. |.+.|+.|.|+|..+.
T Consensus 146 GEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 146 GEAFVQFESQESAEIALGR-HRENIGHRYIEVFRSS 180 (510)
T ss_pred cceEEEecCHHHHHHHHHH-HHHhhccceEEeehhH
Confidence 8999999999999999765 5578999999998766
No 54
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=1.3e-17 Score=132.42 Aligned_cols=172 Identities=15% Similarity=0.253 Sum_probs=132.6
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeec
Q 016188 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (394)
Q Consensus 115 ~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a 194 (394)
.+++|||+|||.++.+.+|.++| .+||.|.+|.+...+ ..-.||||+|++..+|+.||..-++..++|..|.|+++
T Consensus 5 ~~~~iyvGNLP~diRekeieDlF-yKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLF-YKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred ccceEEecCCCcchhhccHHHHH-hhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 46889999999999999999999 899999999886543 34679999999999999999999999999999999998
Q ss_pred CCCCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEE
Q 016188 195 TPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFV 274 (394)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV 274 (394)
..-.........-.. ... ..........+........|.|.+||++-+|+||+++..+-|.|.-..+.++ +.+.|
T Consensus 81 rggr~s~~~~G~y~g---ggr-gGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-g~GvV 155 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSG---GGR-GGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-GVGVV 155 (241)
T ss_pred cCCCcccccccccCC---CCC-CCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-cceee
Confidence 654422111100000 000 0000111111222233468899999999999999999999999999999877 59999
Q ss_pred EeCchHHHHHHHHHhCCceeC
Q 016188 275 QFAARASAEEAILRMQGHMIG 295 (394)
Q Consensus 275 ~f~~~~~a~~a~~~l~g~~~~ 295 (394)
+|...|+.+-|+..|....+.
T Consensus 156 ~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 156 EYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred eeeehhhHHHHHHhhcccccc
Confidence 999999999999999876654
No 55
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.76 E-value=4.4e-17 Score=143.33 Aligned_cols=281 Identities=15% Similarity=0.160 Sum_probs=185.7
Q ss_pred CcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceee
Q 016188 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (394)
Q Consensus 19 ~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~ 98 (394)
+.++...|..++|||..++.+|..+|.......--..+.....|+..+.+.|.|.+.|.-+-|++. +...+..+.+.+.
T Consensus 56 ~~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievY 134 (508)
T KOG1365|consen 56 SADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVY 134 (508)
T ss_pred ccCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeee
Confidence 456667799999999999999999998653221122222223577789999999999999999976 3334444333332
Q ss_pred e-------ecccCCCCCCCCCCCCc--ceEEEcCCCCCCCHHHHHHHHHhh----CCCeeEEEEeeCCCCCCCccEEEEE
Q 016188 99 L-------NWASFGIGEKRPDAGPE--HSIFVGDLAPDVTDYLLQETFRSQ----YPSVRGAKVVTDPNTGRSKGYGFVK 165 (394)
Q Consensus 99 ~-------~~~~~~~~~~~~~~~~~--~~l~v~nlp~~~t~~~l~~~f~~~----~G~v~~v~i~~~~~tg~~~g~afV~ 165 (394)
. .++.....+........ -.|.+++||+++++.++.++| .. -|..+.|.+++.++ |+..|-|||.
T Consensus 135 ka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF-~~~cpv~~g~egvLFV~rpd-grpTGdAFvl 212 (508)
T KOG1365|consen 135 KATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFF-GPPCPVTGGTEGVLFVTRPD-GRPTGDAFVL 212 (508)
T ss_pred ccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhc-CCCCcccCCccceEEEECCC-CCcccceEEE
Confidence 2 22222222222222222 345669999999999999999 42 23456666666544 8999999999
Q ss_pred eCCHHHHHHHHHhhCCeeecCcceEEeecCCCCCcccccccccccccCCCCCCC---CCcccCCCCCCCCccEEEEcCCC
Q 016188 166 FLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYT---TPVQVFPADNDITNTTIFVGNLD 242 (394)
Q Consensus 166 f~~~e~a~~ai~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~v~nl~ 242 (394)
|..+++|..|+. .|...+.-|.|.+.+++...-...-................ .+.... .......+|.+++||
T Consensus 213 fa~ee~aq~aL~-khrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~--p~~~~kdcvRLRGLP 289 (508)
T KOG1365|consen 213 FACEEDAQFALR-KHRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLV--PPTRSKDCVRLRGLP 289 (508)
T ss_pred ecCHHHHHHHHH-HHHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccC--CCCCCCCeeEecCCC
Confidence 999999999994 46666777888877765332211111110000000000000 011111 112225789999999
Q ss_pred CCCCHHHHHHHhcccCCeEE---EEEeC-----CCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcc
Q 016188 243 PNVTEEELKQTFLHFGEIVN---VKIPM-----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (394)
Q Consensus 243 ~~~t~~~l~~~F~~~G~i~~---~~i~~-----~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 305 (394)
+..+.+||.++|..|-.-++ |.+.. ..|-|||+|.+.++|..|....|.+....|.|+|.-+.
T Consensus 290 y~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 290 YEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred hhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 99999999999998864333 44443 26899999999999999999999888889999998766
No 56
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.75 E-value=8.3e-17 Score=133.14 Aligned_cols=165 Identities=22% Similarity=0.413 Sum_probs=135.2
Q ss_pred CCcceEEEcCCCCcCCHHHHHH----HHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccce
Q 016188 21 EEVRTLWIGDLQYWFDENYLSS----CFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQN 96 (394)
Q Consensus 21 ~~~~~v~V~nLp~~~~e~~l~~----~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~ 96 (394)
.+..||||.||+..+..++|+. +|++||.|.+|...+ +.+.+|.|||.|.+.+.|..|+..|+|..+.++.+.
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 4445999999999999999998 999999999887776 468899999999999999999999999999997766
Q ss_pred eeeecccCCCCCC-------------------------------------------CCCCCCcceEEEcCCCCCCCHHHH
Q 016188 97 FRLNWASFGIGEK-------------------------------------------RPDAGPEHSIFVGDLAPDVTDYLL 133 (394)
Q Consensus 97 v~~~~~~~~~~~~-------------------------------------------~~~~~~~~~l~v~nlp~~~t~~~l 133 (394)
+.........-.+ .....+++.+|+.|||.+++.+.+
T Consensus 84 iqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l 163 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEML 163 (221)
T ss_pred eecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHH
Confidence 6553322110000 112456778999999999999999
Q ss_pred HHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeec-CcceEEeec
Q 016188 134 QETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCS-TRPMRISAA 194 (394)
Q Consensus 134 ~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~-g~~l~v~~a 194 (394)
..+| .+|....+++++... .+.|||+|.+...|..|...+++..+. ...+.|.++
T Consensus 164 ~~lf-~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 164 SDLF-EQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred HHHH-hhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 9999 799999999988753 469999999999999999999998874 666666554
No 57
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.71 E-value=1.8e-16 Score=127.70 Aligned_cols=87 Identities=33% Similarity=0.560 Sum_probs=80.9
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEE
Q 016188 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191 (394)
Q Consensus 112 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v 191 (394)
....+++|||+|||+++++++|+++| ++||.|.++.++.++.|++++|||||+|.+.++|+.|++.|++..+.++.|.|
T Consensus 30 ~~~~~~~lfVgnL~~~~te~~L~~~F-~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V 108 (144)
T PLN03134 30 LRLMSTKLFIGGLSWGTDDASLRDAF-AHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRV 108 (144)
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHH-hcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34457889999999999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCC
Q 016188 192 SAATPKKT 199 (394)
Q Consensus 192 ~~a~~~~~ 199 (394)
.++..+..
T Consensus 109 ~~a~~~~~ 116 (144)
T PLN03134 109 NPANDRPS 116 (144)
T ss_pred EeCCcCCC
Confidence 99876543
No 58
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.70 E-value=4.4e-16 Score=127.51 Aligned_cols=181 Identities=23% Similarity=0.337 Sum_probs=126.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeC-CCCCCCccEEEEEeCCHHHHHHHHHhhCCeee---cCcce
Q 016188 114 GPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTD-PNTGRSKGYGFVKFLDENERNRAMTEMNGVFC---STRPM 189 (394)
Q Consensus 114 ~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~-~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~---~g~~l 189 (394)
..-++|||.+||.++...+|..+|+ .|-..+...+... +...-++-+|||+|.+..+|..|+..|||..| .+..|
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR-~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFR-RFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhc-cCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 3468999999999999999999995 6655776666543 33334668999999999999999999999998 56677
Q ss_pred EEeecCCCCCcccccccccc-cc------------------cC------CCC------C------------------CCC
Q 016188 190 RISAATPKKTTGFQQQYAAV-KA------------------TY------PVA------A------------------YTT 220 (394)
Q Consensus 190 ~v~~a~~~~~~~~~~~~~~~-~~------------------~~------~~~------~------------------~~~ 220 (394)
++..+............... .. .. +.. . .+.
T Consensus 111 hiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~ 190 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKA 190 (284)
T ss_pred EeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcC
Confidence 77776544332221111000 00 00 000 0 000
Q ss_pred Cc-------ccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC--CcEEEEEeCchHHHHHHHHHhCC
Q 016188 221 PV-------QVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG--RGCGFVQFAARASAEEAILRMQG 291 (394)
Q Consensus 221 ~~-------~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~--~g~~fV~f~~~~~a~~a~~~l~g 291 (394)
|. ..........+.+|||.||..+|+|++|+++|+.|.....++|... -..||++|++.+.|..|+..|.|
T Consensus 191 P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg 270 (284)
T KOG1457|consen 191 PSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQG 270 (284)
T ss_pred CcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhc
Confidence 00 0000112233568999999999999999999999987777766543 46899999999999999999998
Q ss_pred ceeC
Q 016188 292 HMIG 295 (394)
Q Consensus 292 ~~~~ 295 (394)
..|.
T Consensus 271 ~~~s 274 (284)
T KOG1457|consen 271 NLLS 274 (284)
T ss_pred ceec
Confidence 8763
No 59
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=1.4e-16 Score=133.25 Aligned_cols=167 Identities=20% Similarity=0.357 Sum_probs=134.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeecCC
Q 016188 117 HSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATP 196 (394)
Q Consensus 117 ~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a~~ 196 (394)
..+||++||+.+.+.+|.++| ..||.+.++.+.. ||+||+|.+.-+|..|+..+++.++.+-.+.|.++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f-~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFF-KGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHH-hhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 468999999999999999999 8999999987754 4899999999999999999999999888888888765
Q ss_pred CCCcccccccccccccCCCCCCCCCc-ccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEE
Q 016188 197 KKTTGFQQQYAAVKATYPVAAYTTPV-QVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQ 275 (394)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~ 275 (394)
..... ..+..+ .... ...........+.+.|.+++..+.+++|.++|.++|.+....+ .++++||+
T Consensus 73 ~~~~~----------g~~~~g-~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--~~~~~~v~ 139 (216)
T KOG0106|consen 73 KRRGR----------GRPRGG-DRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--RRNFAFVE 139 (216)
T ss_pred ccccc----------CCCCCC-CccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--hcccccee
Confidence 43221 000000 0000 1111223445688999999999999999999999999966655 58999999
Q ss_pred eCchHHHHHHHHHhCCceeCcEEEEEEEcc
Q 016188 276 FAARASAEEAILRMQGHMIGQQQVRISWGR 305 (394)
Q Consensus 276 f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 305 (394)
|++.++|.+|+..|++..+.++.|++....
T Consensus 140 Fs~~~da~ra~~~l~~~~~~~~~l~~~~~~ 169 (216)
T KOG0106|consen 140 FSEQEDAKRALEKLDGKKLNGRRISVEKNS 169 (216)
T ss_pred ehhhhhhhhcchhccchhhcCceeeecccC
Confidence 999999999999999999999999995443
No 60
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.67 E-value=3.3e-15 Score=133.76 Aligned_cols=192 Identities=18% Similarity=0.288 Sum_probs=145.9
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeecC
Q 016188 116 EHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAAT 195 (394)
Q Consensus 116 ~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a~ 195 (394)
.+.+||.|||+++...+|+++|+++.|+|+.|.++.|.+ |++||+|.|+|+++|.+++|++.|+...+.||+|.|+...
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~-GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES-GKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC-CCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 456999999999999999999999999999999999964 9999999999999999999999999999999999997654
Q ss_pred CCCCcccc-cc----------------c---------------------cccccc-----CCCCCCCC-----------C
Q 016188 196 PKKTTGFQ-QQ----------------Y---------------------AAVKAT-----YPVAAYTT-----------P 221 (394)
Q Consensus 196 ~~~~~~~~-~~----------------~---------------------~~~~~~-----~~~~~~~~-----------~ 221 (394)
........ .. . .+.... .-...... .
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 42211000 00 0 000000 00000000 0
Q ss_pred ccc-CCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-----CcEEEEEeCchHHHHHHHHHhCCceeC
Q 016188 222 VQV-FPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG-----RGCGFVQFAARASAEEAILRMQGHMIG 295 (394)
Q Consensus 222 ~~~-~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~ 295 (394)
... .-....+...++||.||...+..+.|++.|.--|+|+.+.+..+ +|++.++|+++-+|..||..|++.-+.
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~ 282 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLF 282 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCc
Confidence 000 00123445678999999999999999999999999999887543 799999999999999999999987778
Q ss_pred cEEEEEEEcccCC
Q 016188 296 QQQVRISWGRKQD 308 (394)
Q Consensus 296 g~~l~v~~a~~~~ 308 (394)
+++..+.+.+-.+
T Consensus 283 ~~~~~~Rl~~~~D 295 (608)
T KOG4212|consen 283 DRRMTVRLDRIPD 295 (608)
T ss_pred cccceeecccccc
Confidence 8888888766433
No 61
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.65 E-value=6.3e-15 Score=128.51 Aligned_cols=187 Identities=18% Similarity=0.225 Sum_probs=141.9
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhhCCCeeE--------EEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCc
Q 016188 116 EHSIFVGDLAPDVTDYLLQETFRSQYPSVRG--------AKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTR 187 (394)
Q Consensus 116 ~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~--------v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~ 187 (394)
+.+|||.|||.++|-+++.++| +++|.|.. |++.++.. |+.+|-|.+.|...+++..|+..|++..+.|+
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~-sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVM-SKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred CceEEecCCCCcccHHHHHHHH-HhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 5679999999999999999999 89997653 67888755 99999999999999999999999999999999
Q ss_pred ceEEeecCCCCCcccccccc---------cccccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCC----CC-------H
Q 016188 188 PMRISAATPKKTTGFQQQYA---------AVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPN----VT-------E 247 (394)
Q Consensus 188 ~l~v~~a~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~----~t-------~ 247 (394)
.|+|..|.-........... ..........-+.+-. .........++|.+.||-.. .+ .
T Consensus 212 ~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~-~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlk 290 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDR-DDPSKARADRTVILKNMFTPEDFEKNPDLLNDLK 290 (382)
T ss_pred EEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCc-cccccccCCcEEEeeecCCHHHhccCHHHHHHHH
Confidence 99999986443322211110 0000001111111211 22333445688889988432 12 4
Q ss_pred HHHHHHhcccCCeEEEEEe--CCCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcc
Q 016188 248 EELKQTFLHFGEIVNVKIP--MGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (394)
Q Consensus 248 ~~l~~~F~~~G~i~~~~i~--~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 305 (394)
++|++-+++||.|.+|.|. .+.|.+-|.|.+.++|..||+.|+|+.++||.|..++-.
T Consensus 291 edl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~D 350 (382)
T KOG1548|consen 291 EDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWD 350 (382)
T ss_pred HHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeC
Confidence 6777889999999999998 457999999999999999999999999999999988755
No 62
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.64 E-value=9.7e-16 Score=132.55 Aligned_cols=95 Identities=20% Similarity=0.412 Sum_probs=79.7
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC----CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEE
Q 016188 228 DNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG----RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISW 303 (394)
Q Consensus 228 ~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 303 (394)
......++|+|+|||+...+-||+.+|++||+|.+|+|+.+ |||+||+|++.++|++|.+.|||..|.||+|+|..
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 34455789999999999999999999999999999999864 89999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCCCCC
Q 016188 304 GRKQDVTGSVAAQVDPSQW 322 (394)
Q Consensus 304 a~~~~~~~~~~~~~~~~~~ 322 (394)
|..+-......-.....+|
T Consensus 171 ATarV~n~K~~v~p~~~g~ 189 (376)
T KOG0125|consen 171 ATARVHNKKKKVLPYPNGW 189 (376)
T ss_pred cchhhccCCcccCCCcccc
Confidence 9865443333333333344
No 63
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=6.5e-16 Score=129.32 Aligned_cols=152 Identities=21% Similarity=0.382 Sum_probs=127.6
Q ss_pred ceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeeeeccc
Q 016188 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWAS 103 (394)
Q Consensus 24 ~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~~~~~ 103 (394)
..|||++||+.+.+.+|+.+|..||.+.+|.+.. +|+||+|.+..+|..|+..|++..|.+.. +.+.++.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~--~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGER--LVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceeccee--eeeeccc
Confidence 4799999999999999999999999999887755 67899999999999999999999999855 6666665
Q ss_pred CCCCC---------------CCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCC
Q 016188 104 FGIGE---------------KRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLD 168 (394)
Q Consensus 104 ~~~~~---------------~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~ 168 (394)
..... ..........++|.+++..+.+.+|.++| ..+|.+....+ ..+++||+|.+
T Consensus 72 ~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~-~~~g~~~~~~~--------~~~~~~v~Fs~ 142 (216)
T KOG0106|consen 72 GKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHF-RPAGEVTYVDA--------RRNFAFVEFSE 142 (216)
T ss_pred ccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhh-cccCCCchhhh--------hccccceeehh
Confidence 32111 11223446678999999999999999999 89999855544 34599999999
Q ss_pred HHHHHHHHHhhCCeeecCcceEEeec
Q 016188 169 ENERNRAMTEMNGVFCSTRPMRISAA 194 (394)
Q Consensus 169 ~e~a~~ai~~l~~~~~~g~~l~v~~a 194 (394)
.++|.+|+..|++..+.++.|.+...
T Consensus 143 ~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 143 QEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred hhhhhhcchhccchhhcCceeeeccc
Confidence 99999999999999999999999444
No 64
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=5.2e-15 Score=123.17 Aligned_cols=85 Identities=25% Similarity=0.407 Sum_probs=78.2
Q ss_pred CCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCcccee
Q 016188 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNF 97 (394)
Q Consensus 18 ~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v 97 (394)
.+-++..+|.|.||+.+++|++|+++|.+||.|..|.+.+++.+|.++|||||.|.+.++|.+||+.|||.-+.. +-+
T Consensus 184 R~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~--LIL 261 (270)
T KOG0122|consen 184 RERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDN--LIL 261 (270)
T ss_pred ccCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccce--EEE
Confidence 455578899999999999999999999999999999999999999999999999999999999999999998887 667
Q ss_pred eeecccC
Q 016188 98 RLNWASF 104 (394)
Q Consensus 98 ~~~~~~~ 104 (394)
++.|+.+
T Consensus 262 rvEwskP 268 (270)
T KOG0122|consen 262 RVEWSKP 268 (270)
T ss_pred EEEecCC
Confidence 7777754
No 65
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=6.3e-15 Score=116.48 Aligned_cols=79 Identities=28% Similarity=0.508 Sum_probs=73.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccCCCCC
Q 016188 233 NTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG-RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVTG 311 (394)
Q Consensus 233 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~-~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~~ 311 (394)
.++|||+||+..+++.+|...|..||.|.+|.|... .|||||+|+++.+|+.|+..|+|+.|+|..|+|+++..+....
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r~~ 89 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPRGS 89 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCcccc
Confidence 589999999999999999999999999999999764 7999999999999999999999999999999999998665533
No 66
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=1.8e-15 Score=125.42 Aligned_cols=79 Identities=38% Similarity=0.523 Sum_probs=72.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeecC
Q 016188 116 EHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAAT 195 (394)
Q Consensus 116 ~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a~ 195 (394)
-++||||||+|++..++|+++| ++||+|++.+|+.|++||+||||+||+|++.++|.+|++. -+-.|+||+..++.+.
T Consensus 12 ~TKifVggL~w~T~~~~l~~yF-eqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYF-EQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred EEEEEEcCcccccchHHHHHHH-HHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 5689999999999999999999 8999999999999999999999999999999999999963 3456799999998876
Q ss_pred C
Q 016188 196 P 196 (394)
Q Consensus 196 ~ 196 (394)
-
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 5
No 67
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.59 E-value=9.6e-14 Score=121.20 Aligned_cols=169 Identities=15% Similarity=0.323 Sum_probs=134.1
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHhhcCCceE--------EEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCc
Q 016188 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVS--------IKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGT 93 (394)
Q Consensus 22 ~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~--------v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~ 93 (394)
-...|||.|||.++|.+++.++|.++|.|.. |++.++. .|+-+|=|++.|...|++..|++.|++..+.+.
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 3356999999999999999999999998744 8888887 699999999999999999999999999999985
Q ss_pred cceeeeecccCCC---------------------------------CCCCCCCCCcceEEEcCCCC----CCC-------
Q 016188 94 EQNFRLNWASFGI---------------------------------GEKRPDAGPEHSIFVGDLAP----DVT------- 129 (394)
Q Consensus 94 ~~~v~~~~~~~~~---------------------------------~~~~~~~~~~~~l~v~nlp~----~~t------- 129 (394)
. ++|..|.... ..........++|.+.|+=. ..+
T Consensus 212 ~--~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dl 289 (382)
T KOG1548|consen 212 K--LRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDL 289 (382)
T ss_pred E--EEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHH
Confidence 4 4444333110 00112223456788888732 222
Q ss_pred HHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeecCCCC
Q 016188 130 DYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198 (394)
Q Consensus 130 ~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a~~~~ 198 (394)
+++|++.. ++||.|..|.+.-. .+.|.+-|.|.+.++|..||+.|+|..+.||.|..+....+.
T Consensus 290 kedl~eec-~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 290 KEDLTEEC-EKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKT 353 (382)
T ss_pred HHHHHHHH-HHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcc
Confidence 56778888 89999999988743 357899999999999999999999999999999988776543
No 68
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.59 E-value=1e-13 Score=113.83 Aligned_cols=160 Identities=21% Similarity=0.286 Sum_probs=118.9
Q ss_pred cCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCC-CCcceEEEEEcCHHHHHHHHHHcCCCCCCC-cccee
Q 016188 20 LEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITG-QPEGYGFVEFVSHAAAERVLQTYNGTPMPG-TEQNF 97 (394)
Q Consensus 20 ~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g-~~~g~afV~f~~~e~A~~a~~~l~~~~~~~-~~~~v 97 (394)
..+-|||||.+||.++...||..+|..|--.+.+.+......+ ..+.+|||.|.+..+|..|++.|||..+.- ...++
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 3457999999999999999999999999777777666544332 456899999999999999999999988852 33444
Q ss_pred eeecccCCCCCCCC------------------------------------------------------------------
Q 016188 98 RLNWASFGIGEKRP------------------------------------------------------------------ 111 (394)
Q Consensus 98 ~~~~~~~~~~~~~~------------------------------------------------------------------ 111 (394)
++..++.....++.
T Consensus 111 hiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~ 190 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKA 190 (284)
T ss_pred EeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcC
Confidence 44333210000000
Q ss_pred ---------------CCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHH
Q 016188 112 ---------------DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAM 176 (394)
Q Consensus 112 ---------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai 176 (394)
......+|||.||.++++|++|+..| +.|.....++|-.. | ..-.||++|++.+.|..|+
T Consensus 191 P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~-~~~~gf~~l~~~~~---~-g~~vaf~~~~~~~~at~am 265 (284)
T KOG1457|consen 191 PSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLL-SRYPGFHILKIRAR---G-GMPVAFADFEEIEQATDAM 265 (284)
T ss_pred CcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHH-HhCCCceEEEEecC---C-CcceEeecHHHHHHHHHHH
Confidence 00113479999999999999999999 89987766655321 2 2337999999999999999
Q ss_pred HhhCCeee
Q 016188 177 TEMNGVFC 184 (394)
Q Consensus 177 ~~l~~~~~ 184 (394)
..|+|..+
T Consensus 266 ~~lqg~~~ 273 (284)
T KOG1457|consen 266 NHLQGNLL 273 (284)
T ss_pred HHhhccee
Confidence 99998766
No 69
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.57 E-value=8.5e-15 Score=103.51 Aligned_cols=69 Identities=38% Similarity=0.666 Sum_probs=64.6
Q ss_pred EEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccc
Q 016188 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQ 95 (394)
Q Consensus 26 v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~ 95 (394)
|||+|||+++++++|+++|++||.|..+.+..+ .++..+++|||+|.+.++|++|++.|++..+.++.+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~i 69 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKI 69 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCc
Confidence 799999999999999999999999999999998 478899999999999999999999999999988543
No 70
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=1.8e-14 Score=119.55 Aligned_cols=81 Identities=28% Similarity=0.484 Sum_probs=72.1
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeeee
Q 016188 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLN 100 (394)
Q Consensus 21 ~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~~ 100 (394)
..-.+|||++|+|++..|+|+++|++||+|++..|+.|+.+|+++||+||+|++.++|.+|.+. -+-.|+|+..++.+.
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLA 88 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchh
Confidence 3457899999999999999999999999999999999999999999999999999999999976 455678877766665
Q ss_pred cc
Q 016188 101 WA 102 (394)
Q Consensus 101 ~~ 102 (394)
..
T Consensus 89 ~l 90 (247)
T KOG0149|consen 89 SL 90 (247)
T ss_pred hh
Confidence 44
No 71
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.54 E-value=5.1e-14 Score=99.47 Aligned_cols=70 Identities=40% Similarity=0.762 Sum_probs=66.4
Q ss_pred EEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceE
Q 016188 119 IFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190 (394)
Q Consensus 119 l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~ 190 (394)
|||+|||+++++++|+++| +.||.|..+.+..+ .++..+++|||+|.+.++|..|++.+++..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f-~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFF-SQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHH-HTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHH-HHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999 89999999999998 5689999999999999999999999999999999875
No 72
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=2.9e-14 Score=106.63 Aligned_cols=74 Identities=31% Similarity=0.612 Sum_probs=69.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCC------cEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcc
Q 016188 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGR------GCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (394)
Q Consensus 232 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~------g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 305 (394)
.+++|||+||+..++|++|.++|+++|.|..|.+-.+| |||||+|.+.++|..|+.-++|+.++.+.|+|.|..
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 45899999999999999999999999999999997764 899999999999999999999999999999999865
No 73
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=2.8e-14 Score=112.86 Aligned_cols=77 Identities=23% Similarity=0.391 Sum_probs=70.5
Q ss_pred cceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeeeecc
Q 016188 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWA 102 (394)
Q Consensus 23 ~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~~~~ 102 (394)
.++|||+||+..+++.||+.+|..||+|.+|||.+.+ .|||||+|++..||..|+..|+|+.|++..+.|+++.-
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 5789999999999999999999999999999999865 79999999999999999999999999997777777655
Q ss_pred cC
Q 016188 103 SF 104 (394)
Q Consensus 103 ~~ 104 (394)
..
T Consensus 85 ~~ 86 (195)
T KOG0107|consen 85 RP 86 (195)
T ss_pred Cc
Confidence 43
No 74
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.52 E-value=6.9e-14 Score=120.40 Aligned_cols=74 Identities=28% Similarity=0.376 Sum_probs=69.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC---CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccC
Q 016188 233 NTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG---RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307 (394)
Q Consensus 233 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~---~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 307 (394)
.++|||+||++.+|+++|+++|+.||.|.+|.|..+ ++||||+|.+.++|..|+. |+|..|.|+.|+|.++..-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 478999999999999999999999999999999876 5899999999999999985 9999999999999997643
No 75
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.51 E-value=5.8e-14 Score=113.84 Aligned_cols=75 Identities=29% Similarity=0.548 Sum_probs=71.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEc
Q 016188 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWG 304 (394)
Q Consensus 231 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 304 (394)
....+|.|-||.+.++.++|+.+|++||.|-+|.|++| +|||||.|.+..+|+.|+++|+|.+++|+.|.|.+|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 34578999999999999999999999999999999986 699999999999999999999999999999999998
Q ss_pred c
Q 016188 305 R 305 (394)
Q Consensus 305 ~ 305 (394)
+
T Consensus 91 r 91 (256)
T KOG4207|consen 91 R 91 (256)
T ss_pred h
Confidence 8
No 76
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=1.8e-13 Score=118.71 Aligned_cols=82 Identities=24% Similarity=0.447 Sum_probs=71.1
Q ss_pred CcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceee
Q 016188 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (394)
Q Consensus 19 ~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~ 98 (394)
+.+--++|+|.|||....|-||+.+|++||+|.+|.|+-+. .-+|||+||+|++.+||++|.+.|+|+.+.|+.+.|+
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 33444789999999999999999999999999999999875 4578999999999999999999999999999665554
Q ss_pred eecc
Q 016188 99 LNWA 102 (394)
Q Consensus 99 ~~~~ 102 (394)
...+
T Consensus 170 ~ATa 173 (376)
T KOG0125|consen 170 NATA 173 (376)
T ss_pred ccch
Confidence 4433
No 77
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=1.1e-13 Score=115.23 Aligned_cols=83 Identities=27% Similarity=0.465 Sum_probs=79.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEee
Q 016188 114 GPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISA 193 (394)
Q Consensus 114 ~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~ 193 (394)
...++|.|.||+.++++++|+++| ..||.|..+.+.+|++||.+||||||.|.+.++|.+||+.|+|.-.++--|.|.|
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf-~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELF-RPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CccceeEEecCccccChhHHHHHh-hccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 357889999999999999999999 7999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 016188 194 ATPK 197 (394)
Q Consensus 194 a~~~ 197 (394)
+.++
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9875
No 78
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.48 E-value=8.7e-14 Score=98.29 Aligned_cols=68 Identities=35% Similarity=0.602 Sum_probs=62.1
Q ss_pred EEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCcc
Q 016188 26 LWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTE 94 (394)
Q Consensus 26 v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~ 94 (394)
|+|+|||+++++++|.++|+.+|.|..|.+..++. +..+++|||+|.++++|.+|++.+++..+.++.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~ 68 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRK 68 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEE
Confidence 79999999999999999999999999999999985 899999999999999999999999888888854
No 79
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.48 E-value=7.1e-13 Score=120.57 Aligned_cols=145 Identities=31% Similarity=0.505 Sum_probs=114.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeecC
Q 016188 116 EHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAAT 195 (394)
Q Consensus 116 ~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a~ 195 (394)
..+|||+|||.++++++|.++| ..||.|..+.+..++.+++++|+|||+|.+.++|..|+..+++..+.|+.|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F-~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELF-KKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHH-HhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 6999999999999999999999 899999999999998899999999999999999999999999999999999999975
Q ss_pred C-CCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC
Q 016188 196 P-KKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG 268 (394)
Q Consensus 196 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~ 268 (394)
. .......... ......................+++.+++..++..++...|..+|.+....+...
T Consensus 194 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (306)
T COG0724 194 PASQPRSELSNN-------LDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPS 260 (306)
T ss_pred cccccccccccc-------cchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCC
Confidence 4 1111100000 0000000011122333445678999999999999999999999999977777654
No 80
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.47 E-value=8.5e-13 Score=120.06 Aligned_cols=153 Identities=22% Similarity=0.336 Sum_probs=117.4
Q ss_pred cceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeeeec-
Q 016188 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNW- 101 (394)
Q Consensus 23 ~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~~~- 101 (394)
.++|||+|||.++++++|.++|.+||.|..|.+..++.+++++|+|||+|.+.++|..|++.+++..|.++.+.+....
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5999999999999999999999999999999999998899999999999999999999999999999999777766643
Q ss_pred -ccCCCCCC---------------CCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEE
Q 016188 102 -ASFGIGEK---------------RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVK 165 (394)
Q Consensus 102 -~~~~~~~~---------------~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~ 165 (394)
........ .........+++.+++..++..++...| ..+|.+....+.............++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLF-KSRGDIVRASLPPSKDGKIPKSRSFVG 273 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhc-cccccceeeeccCCCCCcccccccccc
Confidence 11111111 1122345678999999999999999999 899998766665554333333344444
Q ss_pred eCCHHHHHHHH
Q 016188 166 FLDENERNRAM 176 (394)
Q Consensus 166 f~~~e~a~~ai 176 (394)
+.....+....
T Consensus 274 ~~~~~~~~~~~ 284 (306)
T COG0724 274 NEASKDALESN 284 (306)
T ss_pred hhHHHhhhhhh
Confidence 44444444444
No 81
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.47 E-value=3e-13 Score=95.52 Aligned_cols=70 Identities=29% Similarity=0.629 Sum_probs=64.6
Q ss_pred EEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceE
Q 016188 119 IFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190 (394)
Q Consensus 119 l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~ 190 (394)
|+|+|||+++++++|+++| +.+|.|..+.+..++. +.++++|||+|.+.++|.+|++.+++..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f-~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFF-SRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHC-TTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHH-HhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999 8999999999999977 89999999999999999999999999999999874
No 82
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.46 E-value=4.5e-13 Score=118.32 Aligned_cols=179 Identities=13% Similarity=0.171 Sum_probs=130.0
Q ss_pred CCCCCcCCcceEEEcCCCCcCCHHHHHHHHhh---c-CCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCC
Q 016188 15 HHPMTLEEVRTLWIGDLQYWFDENYLSSCFAH---T-GEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPM 90 (394)
Q Consensus 15 ~~~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~---~-G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~ 90 (394)
....+-+..--|.+++||.++++.||.++|.+ . |..+.|.+++.. +|+..|-|||.|..+++|..|+.+. ...+
T Consensus 153 ~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~kh-rq~i 230 (508)
T KOG1365|consen 153 APFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKH-RQNI 230 (508)
T ss_pred CCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHH-HHHH
Confidence 33445556677999999999999999999963 2 346788888876 8999999999999999999999652 2222
Q ss_pred CCccceeee------------ecccCC------------CCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCC-ee
Q 016188 91 PGTEQNFRL------------NWASFG------------IGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPS-VR 145 (394)
Q Consensus 91 ~~~~~~v~~------------~~~~~~------------~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~-v~ 145 (394)
.-+.+.+-. ..+... ...-.+...+...|.+++||++.+.|+|..+| ..|.. |.
T Consensus 231 GqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~Fl-gdFa~~i~ 309 (508)
T KOG1365|consen 231 GQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFL-GDFATDIR 309 (508)
T ss_pred hHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHH-HHHhhhcc
Confidence 211111100 000000 00011222336679999999999999999999 67755 33
Q ss_pred E--EEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeecCCC
Q 016188 146 G--AKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK 197 (394)
Q Consensus 146 ~--v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a~~~ 197 (394)
. |.++.+. .|+..|-|||+|.++|+|..|....+++....|.|.|..+...
T Consensus 310 f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~e 362 (508)
T KOG1365|consen 310 FQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVE 362 (508)
T ss_pred cceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHH
Confidence 3 6677664 4999999999999999999999998888888999999776543
No 83
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=6.3e-13 Score=95.67 Aligned_cols=76 Identities=22% Similarity=0.371 Sum_probs=70.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC---CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEccc
Q 016188 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG---RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRK 306 (394)
Q Consensus 231 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~---~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 306 (394)
..+..|||.|||+.+|.|++.++|.+||.|..|+|-.. +|.|||.|++..+|.+|+..|+|..+.++.|.|-+-.+
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 34578999999999999999999999999999999764 79999999999999999999999999999999987553
No 84
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=3.1e-13 Score=101.14 Aligned_cols=82 Identities=22% Similarity=0.352 Sum_probs=77.5
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeec
Q 016188 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (394)
Q Consensus 115 ~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a 194 (394)
.+++|||+||+..++||.|.++| ++.|+|..|.+=.|+.+..+=|||||+|.+.++|+.|++-+++..++.+.|.+.|.
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELF-s~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELF-SKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHH-HhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 37899999999999999999999 99999999999999999999999999999999999999999999999999999987
Q ss_pred CCC
Q 016188 195 TPK 197 (394)
Q Consensus 195 ~~~ 197 (394)
..-
T Consensus 114 ~GF 116 (153)
T KOG0121|consen 114 AGF 116 (153)
T ss_pred ccc
Confidence 543
No 85
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=7.7e-13 Score=113.38 Aligned_cols=86 Identities=24% Similarity=0.500 Sum_probs=80.4
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceE
Q 016188 111 PDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190 (394)
Q Consensus 111 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~ 190 (394)
....+-++|||+-|+.+++|++|+..| +.||.|+.|+|+.+..||+++|||||+|+++.+...|.++.++..|+|+.|.
T Consensus 96 a~gDPy~TLFv~RLnydT~EskLrreF-~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~ 174 (335)
T KOG0113|consen 96 AIGDPYKTLFVARLNYDTSESKLRREF-EKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRIL 174 (335)
T ss_pred ccCCccceeeeeeccccccHHHHHHHH-HhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEE
Confidence 344678999999999999999999999 8999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCC
Q 016188 191 ISAATPK 197 (394)
Q Consensus 191 v~~a~~~ 197 (394)
|.+--..
T Consensus 175 VDvERgR 181 (335)
T KOG0113|consen 175 VDVERGR 181 (335)
T ss_pred EEecccc
Confidence 9876444
No 86
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.42 E-value=1.3e-12 Score=112.67 Aligned_cols=77 Identities=16% Similarity=0.238 Sum_probs=71.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeecC
Q 016188 116 EHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAAT 195 (394)
Q Consensus 116 ~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a~ 195 (394)
.++|||+|||+.+++++|+++| +.||.|++|.|+.+.. ++|||||+|.+.++|+.|+ .|++..+.|+.|.|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefF-S~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFF-SFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEecc
Confidence 5789999999999999999999 8999999999998853 5789999999999999999 699999999999999976
Q ss_pred CC
Q 016188 196 PK 197 (394)
Q Consensus 196 ~~ 197 (394)
..
T Consensus 79 ~~ 80 (260)
T PLN03120 79 DY 80 (260)
T ss_pred CC
Confidence 54
No 87
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.42 E-value=1.4e-12 Score=87.46 Aligned_cols=55 Identities=31% Similarity=0.590 Sum_probs=52.0
Q ss_pred HHHHhcccCCeEEEEEeCCC-cEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEc
Q 016188 250 LKQTFLHFGEIVNVKIPMGR-GCGFVQFAARASAEEAILRMQGHMIGQQQVRISWG 304 (394)
Q Consensus 250 l~~~F~~~G~i~~~~i~~~~-g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 304 (394)
|+++|++||+|.++.+.+++ ++|||+|.+.++|.+|+..|||..++|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999999987 99999999999999999999999999999999986
No 88
>PLN03213 repressor of silencing 3; Provisional
Probab=99.42 E-value=9.1e-13 Score=120.08 Aligned_cols=75 Identities=17% Similarity=0.315 Sum_probs=70.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC--CcEEEEEeCch--HHHHHHHHHhCCceeCcEEEEEEEcc
Q 016188 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG--RGCGFVQFAAR--ASAEEAILRMQGHMIGQQQVRISWGR 305 (394)
Q Consensus 231 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~--~g~~fV~f~~~--~~a~~a~~~l~g~~~~g~~l~v~~a~ 305 (394)
....+||||||++.+++++|+.+|..||.|.+|.|++. ||||||+|.+. .++.+||..|||..+.|+.|+|..|+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 34589999999999999999999999999999999974 89999999987 68999999999999999999999988
No 89
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=1e-11 Score=114.49 Aligned_cols=155 Identities=21% Similarity=0.348 Sum_probs=119.0
Q ss_pred CcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecC-CCC--CCcc---eEEEEEcCHHHHHHHHHHcCCCCCCC
Q 016188 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNK-ITG--QPEG---YGFVEFVSHAAAERVLQTYNGTPMPG 92 (394)
Q Consensus 19 ~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~-~~g--~~~g---~afV~f~~~e~A~~a~~~l~~~~~~~ 92 (394)
...=++.|||++||++++|++|...|..||.+. |.+.... ..+ -++| |+|+.|+++.++...+..+.- ..
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~ 330 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GE 330 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cc
Confidence 445568999999999999999999999999864 5555311 111 2456 999999999999988876543 22
Q ss_pred ccceeeeecccC----------------CCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCC
Q 016188 93 TEQNFRLNWASF----------------GIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTG 156 (394)
Q Consensus 93 ~~~~v~~~~~~~----------------~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg 156 (394)
.+.-+.++.... -..+....-.+.++||||+||..++.++|..+|...||.|..+-|-+|++-+
T Consensus 331 ~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~K 410 (520)
T KOG0129|consen 331 GNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLK 410 (520)
T ss_pred cceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccC
Confidence 122222211111 1112334456789999999999999999999997699999999999998889
Q ss_pred CCccEEEEEeCCHHHHHHHHH
Q 016188 157 RSKGYGFVKFLDENERNRAMT 177 (394)
Q Consensus 157 ~~~g~afV~f~~~e~a~~ai~ 177 (394)
..+|-|-|+|.+..+-.+||.
T Consensus 411 YPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 411 YPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred CCCCcceeeecccHHHHHHHh
Confidence 999999999999999999996
No 90
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.41 E-value=5.5e-13 Score=108.23 Aligned_cols=84 Identities=27% Similarity=0.457 Sum_probs=78.8
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceE
Q 016188 111 PDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190 (394)
Q Consensus 111 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~ 190 (394)
++.....+|.|-||..-++.++|+..| ++||.|-+|.|.+|+.|+.++|||||.|.+..+|+.|+++|+|..++|+.|.
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvF-ekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVF-EKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHH-HHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 344557789999999999999999999 8999999999999999999999999999999999999999999999999999
Q ss_pred EeecC
Q 016188 191 ISAAT 195 (394)
Q Consensus 191 v~~a~ 195 (394)
|..+.
T Consensus 87 Vq~ar 91 (256)
T KOG4207|consen 87 VQMAR 91 (256)
T ss_pred ehhhh
Confidence 98774
No 91
>smart00362 RRM_2 RNA recognition motif.
Probab=99.39 E-value=2.8e-12 Score=90.60 Aligned_cols=68 Identities=47% Similarity=0.815 Sum_probs=64.2
Q ss_pred EEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCC----cEEEEEeCchHHHHHHHHHhCCceeCcEEEEEE
Q 016188 235 TIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGR----GCGFVQFAARASAEEAILRMQGHMIGQQQVRIS 302 (394)
Q Consensus 235 ~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~----g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 302 (394)
+|+|+|||..+++++|+++|++||.|..+.+..++ ++|||+|.+.++|.+|+..+++..+.|+.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999998875 999999999999999999999999999999874
No 92
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.38 E-value=2.6e-12 Score=108.83 Aligned_cols=73 Identities=30% Similarity=0.356 Sum_probs=67.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC---CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcc
Q 016188 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG---RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (394)
Q Consensus 232 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~---~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 305 (394)
...+|||+||++.+|+++|+++|+.||+|.+|+|.++ +++|||+|.++++|+.|+ .|+|..|.++.|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 3578999999999999999999999999999999986 479999999999999996 899999999999998654
No 93
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=7e-14 Score=111.12 Aligned_cols=85 Identities=26% Similarity=0.455 Sum_probs=79.0
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeec
Q 016188 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (394)
Q Consensus 115 ~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a 194 (394)
.+.-|||+|||.+.||.+|.-.| ++||+|.+|.+++|..||+|+||||+.|++..+...|+..|||..+.||.|+|...
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VF-SqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVF-SQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred cceEEEECCCcccccCCcEEEEe-eccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 36789999999999999999999 99999999999999999999999999999999999999999999999999999886
Q ss_pred CCCCCc
Q 016188 195 TPKKTT 200 (394)
Q Consensus 195 ~~~~~~ 200 (394)
......
T Consensus 113 ~~Yk~p 118 (219)
T KOG0126|consen 113 SNYKKP 118 (219)
T ss_pred ccccCC
Confidence 554443
No 94
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=5.8e-12 Score=118.29 Aligned_cols=178 Identities=15% Similarity=0.309 Sum_probs=136.9
Q ss_pred CcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceee
Q 016188 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (394)
Q Consensus 19 ~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~ 98 (394)
.......++|++||...+++.+++++..||++....++.+..+|-+++|||.+|.+.-....|+..|||..+.++.+.+.
T Consensus 285 ~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq 364 (500)
T KOG0120|consen 285 VPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQ 364 (500)
T ss_pred cccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEee
Confidence 44556789999999999999999999999999999999999889999999999999999999999999999998777776
Q ss_pred eecccCCCCCCC-----------------CCCCCcceEEEcCCC--CCC-C-------HHHHHHHHHhhCCCeeEEEEee
Q 016188 99 LNWASFGIGEKR-----------------PDAGPEHSIFVGDLA--PDV-T-------DYLLQETFRSQYPSVRGAKVVT 151 (394)
Q Consensus 99 ~~~~~~~~~~~~-----------------~~~~~~~~l~v~nlp--~~~-t-------~~~l~~~f~~~~G~v~~v~i~~ 151 (394)
...........- ....+...|.+.|+- .+. + -|+++..+ ++||.|..|.+.+
T Consensus 365 ~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec-~k~g~v~~v~ipr 443 (500)
T KOG0120|consen 365 RAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTEC-AKFGAVRSVEIPR 443 (500)
T ss_pred hhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHh-cccCceeEEecCC
Confidence 644432111110 011223333333321 111 1 13556666 7999999999987
Q ss_pred CC---CCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeecCCC
Q 016188 152 DP---NTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK 197 (394)
Q Consensus 152 ~~---~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a~~~ 197 (394)
+. +..-..|-.||+|.+.+++++|+++|+|..+.+|.|...|....
T Consensus 444 ~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 444 PYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred CCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 72 22345778999999999999999999999999999999887543
No 95
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=4.3e-12 Score=91.40 Aligned_cols=83 Identities=16% Similarity=0.332 Sum_probs=74.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEe
Q 016188 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRIS 192 (394)
Q Consensus 113 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~ 192 (394)
...++.|||+|||+++|.|+..++| ..||.|..|+|=.+++ .+|-|||.|++..+|.+|++.|+|..+.++.+.|.
T Consensus 15 pevnriLyirNLp~~ITseemydlF-Gkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLF-GKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHh-hcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 3457889999999999999999999 8999999999976654 58999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 016188 193 AATPKKT 199 (394)
Q Consensus 193 ~a~~~~~ 199 (394)
+..+...
T Consensus 91 yyq~~~~ 97 (124)
T KOG0114|consen 91 YYQPEDA 97 (124)
T ss_pred ecCHHHH
Confidence 9876544
No 96
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=3.3e-12 Score=109.55 Aligned_cols=83 Identities=23% Similarity=0.460 Sum_probs=76.9
Q ss_pred CcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceee
Q 016188 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (394)
Q Consensus 19 ~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~ 98 (394)
..++-+||||.-|+.+++|..|+..|+.||+|..|.++++..+|+++|||||+|+++.+...|.+..+|..|.++.+-|-
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999666655
Q ss_pred eec
Q 016188 99 LNW 101 (394)
Q Consensus 99 ~~~ 101 (394)
+..
T Consensus 177 vER 179 (335)
T KOG0113|consen 177 VER 179 (335)
T ss_pred ecc
Confidence 543
No 97
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=7.1e-13 Score=108.53 Aligned_cols=81 Identities=31% Similarity=0.597 Sum_probs=75.3
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEE
Q 016188 230 DITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISW 303 (394)
Q Consensus 230 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 303 (394)
....++|||++|...+++.-|...|-+||.|.+|.++.| |||+||+|...|+|..||..||+.++.||.|+|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 345689999999999999999999999999999999876 89999999999999999999999999999999999
Q ss_pred cccCCCC
Q 016188 304 GRKQDVT 310 (394)
Q Consensus 304 a~~~~~~ 310 (394)
|++...+
T Consensus 87 AkP~kik 93 (298)
T KOG0111|consen 87 AKPEKIK 93 (298)
T ss_pred cCCcccc
Confidence 9976644
No 98
>smart00362 RRM_2 RNA recognition motif.
Probab=99.34 E-value=5.3e-12 Score=89.15 Aligned_cols=70 Identities=34% Similarity=0.601 Sum_probs=63.5
Q ss_pred eEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccce
Q 016188 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQN 96 (394)
Q Consensus 25 ~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~ 96 (394)
+|+|+|||..+++++|+++|++||.|..+.+..+. +.++++|||+|.+.++|.+|++.+++..+.+..+.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~ 70 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLR 70 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEe
Confidence 58999999999999999999999999999998876 67889999999999999999999999888774443
No 99
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.34 E-value=8.2e-12 Score=105.83 Aligned_cols=77 Identities=17% Similarity=0.229 Sum_probs=70.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeecC
Q 016188 116 EHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAAT 195 (394)
Q Consensus 116 ~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a~ 195 (394)
..+|+|+||++.+|+++|+++| +.||+|.+|+|+.+ ++++++|||+|++.++++.|+ .|+|..|.++.|.|....
T Consensus 5 g~TV~V~NLS~~tTE~dLrefF-S~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFF-SHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHH-HhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 5789999999999999999999 89999999999998 456689999999999999999 899999999999998865
Q ss_pred CC
Q 016188 196 PK 197 (394)
Q Consensus 196 ~~ 197 (394)
..
T Consensus 80 ~y 81 (243)
T PLN03121 80 QY 81 (243)
T ss_pred cc
Confidence 43
No 100
>PLN03213 repressor of silencing 3; Provisional
Probab=99.34 E-value=5e-12 Score=115.34 Aligned_cols=79 Identities=22% Similarity=0.375 Sum_probs=72.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCH--HHHHHHHHhhCCeeecCcceEE
Q 016188 114 GPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDE--NERNRAMTEMNGVFCSTRPMRI 191 (394)
Q Consensus 114 ~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~--e~a~~ai~~l~~~~~~g~~l~v 191 (394)
....+||||||++++++++|+..| +.||.|..|.|+ +.+| ||||||+|.+. .++.+||..|++..+.|+.|+|
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravF-SeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIF-SPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHH-HhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 346789999999999999999999 899999999999 4567 99999999987 7899999999999999999999
Q ss_pred eecCCC
Q 016188 192 SAATPK 197 (394)
Q Consensus 192 ~~a~~~ 197 (394)
..|.+.
T Consensus 83 NKAKP~ 88 (759)
T PLN03213 83 EKAKEH 88 (759)
T ss_pred eeccHH
Confidence 998765
No 101
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1e-12 Score=107.68 Aligned_cols=85 Identities=26% Similarity=0.541 Sum_probs=80.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeec
Q 016188 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (394)
Q Consensus 115 ~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a 194 (394)
..++|||++|..++++.-|...| =.||.|.+|.++.|..+++.|||+||+|...|+|..||..||..++.||.|+|.++
T Consensus 9 ~KrtlYVGGladeVtekvLhaAF-IPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAF-IPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred cceeEEeccchHHHHHHHHHhcc-ccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 47899999999999999999999 79999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCc
Q 016188 195 TPKKTT 200 (394)
Q Consensus 195 ~~~~~~ 200 (394)
.+.+..
T Consensus 88 kP~kik 93 (298)
T KOG0111|consen 88 KPEKIK 93 (298)
T ss_pred CCcccc
Confidence 887654
No 102
>smart00360 RRM RNA recognition motif.
Probab=99.32 E-value=8e-12 Score=87.91 Aligned_cols=69 Identities=33% Similarity=0.607 Sum_probs=63.3
Q ss_pred EcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccce
Q 016188 28 IGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQN 96 (394)
Q Consensus 28 V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~ 96 (394)
|+|||..+++++|+++|++||.|..|.+..+..+++++++|||+|.+.++|..|++.+++..+.++.+.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~ 69 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLK 69 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEE
Confidence 679999999999999999999999999999887788999999999999999999999998888775543
No 103
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=5e-12 Score=95.57 Aligned_cols=89 Identities=20% Similarity=0.312 Sum_probs=82.2
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcce
Q 016188 110 RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189 (394)
Q Consensus 110 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l 189 (394)
++.+...-.|||.++..+.++++|.+.| ..||+|+.+.+-.|+.||..+|||.|+|.+.+.|+.|+..+|+..+.+..|
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F-~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v 144 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKF-ADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNV 144 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHH-hhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCce
Confidence 4455667789999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCC
Q 016188 190 RISAATPKKT 199 (394)
Q Consensus 190 ~v~~a~~~~~ 199 (394)
.|.|+-.+..
T Consensus 145 ~VDw~Fv~gp 154 (170)
T KOG0130|consen 145 SVDWCFVKGP 154 (170)
T ss_pred eEEEEEecCC
Confidence 9999865544
No 104
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=6.8e-13 Score=108.68 Aligned_cols=149 Identities=24% Similarity=0.359 Sum_probs=123.6
Q ss_pred CCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCcccee
Q 016188 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNF 97 (394)
Q Consensus 18 ~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v 97 (394)
.+++..++|||.|+-..++|+-|.++|-+.|+|..|.|..+. +++.+ ||||.|.++-++.-|++.+||..+.+..+.+
T Consensus 4 aaae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~ 81 (267)
T KOG4454|consen 4 AAAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQR 81 (267)
T ss_pred CCcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhc
Confidence 355778999999999999999999999999999999888776 66666 9999999999999999999999998865444
Q ss_pred eeecccCCCCCCCCCCCCcceEEEcC----CCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHH
Q 016188 98 RLNWASFGIGEKRPDAGPEHSIFVGD----LAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERN 173 (394)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~v~n----lp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~ 173 (394)
. ++.|+ |...++++.+.+.| +.-+.++.+++.++.+ |+++.+.|+.+...-..-
T Consensus 82 ~--------------------~r~G~shapld~r~~~ei~~~v~-s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P 139 (267)
T KOG4454|consen 82 T--------------------LRCGNSHAPLDERVTEEILYEVF-SQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVP 139 (267)
T ss_pred c--------------------cccCCCcchhhhhcchhhheeee-cccCCCCCcccccccc-CCccCccchhhhhhhcCc
Confidence 3 33344 55667888899999 8999999999998866 899999999998888888
Q ss_pred HHHHhhCCeeecCcceE
Q 016188 174 RAMTEMNGVFCSTRPMR 190 (394)
Q Consensus 174 ~ai~~l~~~~~~g~~l~ 190 (394)
.++..-++.+..-+++.
T Consensus 140 ~~~~~y~~l~~~~~~~~ 156 (267)
T KOG4454|consen 140 FALDLYQGLELFQKKVT 156 (267)
T ss_pred HHhhhhcccCcCCCCcc
Confidence 88876666554444443
No 105
>smart00360 RRM RNA recognition motif.
Probab=99.29 E-value=2.1e-11 Score=85.76 Aligned_cols=71 Identities=38% Similarity=0.749 Sum_probs=66.5
Q ss_pred EcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEe
Q 016188 121 VGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRIS 192 (394)
Q Consensus 121 v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~ 192 (394)
|+|||..+++++|+++| +.||.|..+.+..++.+++++|+|||+|.+.++|..|++.+++..+.++.+.|.
T Consensus 1 i~~l~~~~~~~~l~~~f-~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELF-SKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHH-HhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999 899999999999988889999999999999999999999999999999988763
No 106
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.28 E-value=7.8e-12 Score=116.86 Aligned_cols=83 Identities=33% Similarity=0.565 Sum_probs=79.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeecCC
Q 016188 117 HSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATP 196 (394)
Q Consensus 117 ~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a~~ 196 (394)
+.+||||+|+++++++|.++| +..|.|.+++++.|+.||+++||+|++|.+.++|++|++.|++.++.||+|+|.|+..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~-~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIF-SGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHH-hccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 889999999999999999999 8999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCc
Q 016188 197 KKTT 200 (394)
Q Consensus 197 ~~~~ 200 (394)
.+..
T Consensus 98 ~~~~ 101 (435)
T KOG0108|consen 98 RKNA 101 (435)
T ss_pred cchh
Confidence 6553
No 107
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=6.8e-13 Score=128.63 Aligned_cols=236 Identities=16% Similarity=0.169 Sum_probs=182.8
Q ss_pred cceEEEcCCCCcCCHH-HHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeeeec
Q 016188 23 VRTLWIGDLQYWFDEN-YLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNW 101 (394)
Q Consensus 23 ~~~v~V~nLp~~~~e~-~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~~~ 101 (394)
.+...+.++.+...+. .++..|+.+|.|..|.+......-....+.++.+....+++.+.. ..+..+.++...+-+..
T Consensus 571 ~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~ad 649 (881)
T KOG0128|consen 571 RREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGLAD 649 (881)
T ss_pred hhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCCCC
Confidence 3557788887776555 678889999999999887743222333488999999999999884 46666766655555554
Q ss_pred ccCCCCCCCCCC---CCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHh
Q 016188 102 ASFGIGEKRPDA---GPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTE 178 (394)
Q Consensus 102 ~~~~~~~~~~~~---~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~ 178 (394)
+.......+-.. ....++||.||+..+.+++|...| ..+|.+..+.+....++++.+|.|++.|...+++.+||..
T Consensus 650 ~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~-~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f 728 (881)
T KOG0128|consen 650 AEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERF-SPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAF 728 (881)
T ss_pred chhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhc-CccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhh
Confidence 443222111111 223578999999999999999999 8999988888876677899999999999999999999965
Q ss_pred hCCeeecCcceEEeecCCCCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccC
Q 016188 179 MNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFG 258 (394)
Q Consensus 179 l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G 258 (394)
..++.+. ..+++|.|+|+..|.+.|+.+|+.+|
T Consensus 729 ~d~~~~g-----------------------------------------------K~~v~i~g~pf~gt~e~~k~l~~~~g 761 (881)
T KOG0128|consen 729 RDSCFFG-----------------------------------------------KISVAISGPPFQGTKEELKSLASKTG 761 (881)
T ss_pred hhhhhhh-----------------------------------------------hhhhheeCCCCCCchHHHHhhccccC
Confidence 4443332 15579999999999999999999999
Q ss_pred CeEEEEEeC-----CCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccC
Q 016188 259 EIVNVKIPM-----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307 (394)
Q Consensus 259 ~i~~~~i~~-----~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 307 (394)
++.+..++. .+|.++|.|.+..++.+++.......+..+.+.|..+.+.
T Consensus 762 n~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~ 815 (881)
T KOG0128|consen 762 NVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPE 815 (881)
T ss_pred CccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCCc
Confidence 999988754 3799999999999999998888877787777777776653
No 108
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.27 E-value=3.8e-11 Score=85.21 Aligned_cols=69 Identities=39% Similarity=0.776 Sum_probs=64.8
Q ss_pred EEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-----CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEE
Q 016188 235 TIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG-----RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISW 303 (394)
Q Consensus 235 ~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 303 (394)
+|+|+|||..+++++|+++|+.+|.|..+.+..+ +++|||+|.+.++|..|+..+++..+.|+.|+|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4799999999999999999999999999999875 68999999999999999999999999999999874
No 109
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.26 E-value=3.9e-13 Score=106.90 Aligned_cols=78 Identities=26% Similarity=0.522 Sum_probs=72.2
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceee
Q 016188 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (394)
Q Consensus 21 ~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~ 98 (394)
.++-=|||+|||.+.||.||.-+|++||+|++|.+++++.||+++||||+.|++..+...|+..|||..|.++.++|-
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVD 110 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVD 110 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEee
Confidence 355679999999999999999999999999999999999999999999999999999999999999999999555443
No 110
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.26 E-value=2.2e-11 Score=92.17 Aligned_cols=81 Identities=25% Similarity=0.448 Sum_probs=74.3
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeeeec
Q 016188 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNW 101 (394)
Q Consensus 22 ~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~~~ 101 (394)
+.--|||.++..+++|++|++.|..||+|.+|.+.-++.+|-.+|||+|+|.+.+.|+.|+..+|+..|.+ .++.+.|
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~--q~v~VDw 148 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLG--QNVSVDW 148 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhC--CceeEEE
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999 5666777
Q ss_pred ccC
Q 016188 102 ASF 104 (394)
Q Consensus 102 ~~~ 104 (394)
+..
T Consensus 149 ~Fv 151 (170)
T KOG0130|consen 149 CFV 151 (170)
T ss_pred EEe
Confidence 654
No 111
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=2.5e-10 Score=105.46 Aligned_cols=163 Identities=25% Similarity=0.334 Sum_probs=111.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCC-CC--CCcc---EEEEEeCCHHHHHHHHHhhCCeeecCc
Q 016188 114 GPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPN-TG--RSKG---YGFVKFLDENERNRAMTEMNGVFCSTR 187 (394)
Q Consensus 114 ~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~-tg--~~~g---~afV~f~~~e~a~~ai~~l~~~~~~g~ 187 (394)
.-+++||||+||++++|+.|...| ..||.+. |......+ .+ -.+| |+|+.|+++..+...+.++.. ...
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F-~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~ 331 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASF-GQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEG 331 (520)
T ss_pred ccccceeecCCCccccHHHHHhhc-ccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---ccc
Confidence 347889999999999999999999 8999754 33332111 11 2466 999999999999888866543 334
Q ss_pred ceEEeecCCCCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhc-ccCCeEEEEEe
Q 016188 188 PMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFL-HFGEIVNVKIP 266 (394)
Q Consensus 188 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~-~~G~i~~~~i~ 266 (394)
.+.+..+.+...... ....|+.......-......-.+.++||||+||..++.++|..+|+ -||.|.-+-|.
T Consensus 332 ~~yf~vss~~~k~k~-------VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGID 404 (520)
T KOG0129|consen 332 NYYFKVSSPTIKDKE-------VQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGID 404 (520)
T ss_pred ceEEEEecCcccccc-------eeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEec
Confidence 444433333222110 0011111111111111223334578999999999999999999998 79999999987
Q ss_pred CC------CcEEEEEeCchHHHHHHHHH
Q 016188 267 MG------RGCGFVQFAARASAEEAILR 288 (394)
Q Consensus 267 ~~------~g~~fV~f~~~~~a~~a~~~ 288 (394)
.| +|-|-|+|.+..+-.+||.+
T Consensus 405 tD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 405 TDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCcccCCCCCcceeeecccHHHHHHHhh
Confidence 76 79999999999999999875
No 112
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.21 E-value=3.1e-10 Score=107.80 Aligned_cols=181 Identities=14% Similarity=0.083 Sum_probs=124.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeecCCC
Q 016188 118 SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK 197 (394)
Q Consensus 118 ~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a~~~ 197 (394)
.+-+.+.+++.++.+++.+|.. -.|..+.|..++..+...|.++|+|....++.+|+. -+...+-.|.+.+..+...
T Consensus 313 y~~~~gm~fn~~~nd~rkfF~g--~~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~g~~ 389 (944)
T KOG4307|consen 313 YNNYKGMEFNNDFNDGRKFFPG--RNAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPPGNL 389 (944)
T ss_pred eeeecccccccccchhhhhcCc--ccccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCCCcc
Confidence 4556788999999999999943 336666666666545558999999999999999984 4555566777777665544
Q ss_pred CCccccccccccc-----ccC-----CCCCCCCCcccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEE-EEEe
Q 016188 198 KTTGFQQQYAAVK-----ATY-----PVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVN-VKIP 266 (394)
Q Consensus 198 ~~~~~~~~~~~~~-----~~~-----~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~-~~i~ 266 (394)
............. ..+ +..+...+.+ ..........+|||..||..+++.++.++|..--.|++ |.|.
T Consensus 390 ~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq-~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt 468 (944)
T KOG4307|consen 390 GRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQ-NVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELT 468 (944)
T ss_pred ccccCccccccCCCCcccccCCCCCCCcccccCCCC-CCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEec
Confidence 3332211111100 000 0000111111 11223345689999999999999999999998888877 6664
Q ss_pred C---C--CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEE
Q 016188 267 M---G--RGCGFVQFAARASAEEAILRMQGHMIGQQQVRIS 302 (394)
Q Consensus 267 ~---~--~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 302 (394)
. + ++.|||.|.+++++.+|...-+.+.++.+.|+|.
T Consensus 469 ~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 469 RLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVD 509 (944)
T ss_pred cCCcccccchhhheeccccccchhhhcccccccCceEEEee
Confidence 3 2 6899999999999999987777777899999995
No 113
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.20 E-value=2.4e-10 Score=106.49 Aligned_cols=161 Identities=24% Similarity=0.235 Sum_probs=107.3
Q ss_pred CcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceee
Q 016188 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (394)
Q Consensus 19 ~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~ 98 (394)
..-..++|+|-|||..+++++|+++|+.||+|.+|+.-+. .++.+||+|.|..+|++|++.|++..+.++.+...
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~ 145 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIKRP 145 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCC
Confidence 3556789999999999999999999999999999766554 47899999999999999999999999888665511
Q ss_pred ee-------------ccc--CCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEE
Q 016188 99 LN-------------WAS--FGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGF 163 (394)
Q Consensus 99 ~~-------------~~~--~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~af 163 (394)
-. |+. .......+..-+ +.-.++.|++..+...++..+ +.+|.+.. +. ++.-.-.-|
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~-~~~~~g~l~P~~s~~~~~~~~-~~~~~~~~-~~-----~~~~~hq~~ 217 (549)
T KOG4660|consen 146 GGARRAMGLQSGTSFLNHFGSPLANSPPGGWP-RGQLFGMLSPTRSSILLEHIS-SVDGSSPG-RE-----TPLLNHQRF 217 (549)
T ss_pred CcccccchhcccchhhhhccchhhcCCCCCCc-CCcceeeeccchhhhhhhcch-hccCcccc-cc-----ccchhhhhh
Confidence 10 000 000011111111 222234488888887777777 78887765 22 222222567
Q ss_pred EEeCCHHHHHHHHHhhCCeeecCcceEEee
Q 016188 164 VKFLDENERNRAMTEMNGVFCSTRPMRISA 193 (394)
Q Consensus 164 V~f~~~e~a~~ai~~l~~~~~~g~~l~v~~ 193 (394)
++|.+..++..+.... |..+.+....+..
T Consensus 218 ~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~ 246 (549)
T KOG4660|consen 218 VEFADNRSYAFSEPRG-GFLISNSSGVITF 246 (549)
T ss_pred hhhccccchhhcccCC-ceecCCCCceEEe
Confidence 8888888886655433 5555555544433
No 114
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.20 E-value=2e-10 Score=81.44 Aligned_cols=74 Identities=41% Similarity=0.759 Sum_probs=68.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEee
Q 016188 118 SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISA 193 (394)
Q Consensus 118 ~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~ 193 (394)
+|+|+|||+.+++++|+++| +.+|.|..+.+..++.+ ..+|+|||+|.+.++|..|++.+++..+.++.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~-~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELF-SKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHH-HhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999 78999999999988654 7789999999999999999999999999999998863
No 115
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.19 E-value=9.6e-11 Score=102.80 Aligned_cols=81 Identities=31% Similarity=0.670 Sum_probs=72.9
Q ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCC-ceeCcEEEEEEEc
Q 016188 226 PADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQG-HMIGQQQVRISWG 304 (394)
Q Consensus 226 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g-~~~~g~~l~v~~a 304 (394)
.+..+...++|||++|...+++.+|+++|.+||.|.++.+...+++|||+|.+.++|+.|.+.+-. ..|+|++|+|.|+
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWG 300 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeC
Confidence 344556678999999999999999999999999999999999999999999999999998876544 4599999999999
Q ss_pred cc
Q 016188 305 RK 306 (394)
Q Consensus 305 ~~ 306 (394)
++
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 98
No 116
>smart00361 RRM_1 RNA recognition motif.
Probab=99.19 E-value=1.2e-10 Score=81.90 Aligned_cols=61 Identities=20% Similarity=0.398 Sum_probs=55.0
Q ss_pred HHHHHHHHHh----hCCCeeEEE-EeeCCCC--CCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEE
Q 016188 130 DYLLQETFRS----QYPSVRGAK-VVTDPNT--GRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191 (394)
Q Consensus 130 ~~~l~~~f~~----~~G~v~~v~-i~~~~~t--g~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v 191 (394)
+++|+++| + .||.|..+. ++.++.+ ++++|++||+|.+.++|..|+..||+..+.|+.|.+
T Consensus 2 ~~~l~~~~-~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREF-SEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHH-HHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 57888888 7 999999995 7777666 899999999999999999999999999999999876
No 117
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.17 E-value=1.1e-10 Score=109.13 Aligned_cols=78 Identities=35% Similarity=0.724 Sum_probs=73.3
Q ss_pred ceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeeeeccc
Q 016188 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWAS 103 (394)
Q Consensus 24 ~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~~~~~ 103 (394)
+.|||+|||+++++++|..+|...|.|.+++++.|+.+|+.+||+|++|.++++|..|++.||+..+.+ ..+++.|+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~g--r~l~v~~~~ 96 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNG--RKLRVNYAS 96 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCC--ceEEeeccc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999 455566654
No 118
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.10 E-value=4.1e-09 Score=100.32 Aligned_cols=70 Identities=20% Similarity=0.311 Sum_probs=60.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcccCCeE-EEEEeCC-----CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEE
Q 016188 234 TTIFVGNLDPNVTEEELKQTFLHFGEIV-NVKIPMG-----RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISW 303 (394)
Q Consensus 234 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~-~~~i~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 303 (394)
+.|-+.|+|++++-+||.++|..|-.+- +|.+..+ .|-|.|-|++.++|.+|...|+++.|..++|.|.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 4788999999999999999999996553 3444432 58999999999999999999999999999998865
No 119
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.10 E-value=4.9e-10 Score=75.04 Aligned_cols=56 Identities=29% Similarity=0.607 Sum_probs=50.5
Q ss_pred HHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeec
Q 016188 133 LQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (394)
Q Consensus 133 l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a 194 (394)
|+++| ++||+|..+.+..+. +++|||+|.+.++|..|++.||+..+.|++|.|.++
T Consensus 1 L~~~f-~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLF-SKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHH-TTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHh-CCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899 899999999997653 589999999999999999999999999999999885
No 120
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.09 E-value=6.3e-12 Score=122.04 Aligned_cols=152 Identities=18% Similarity=0.261 Sum_probs=129.9
Q ss_pred cCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeee
Q 016188 20 LEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRL 99 (394)
Q Consensus 20 ~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~ 99 (394)
.++..++||+||+..+.+++|+..|..+|.+..+.+.-+...++-+|+||++|...+++.+|+...+.+.+ +
T Consensus 664 ~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~-g------- 735 (881)
T KOG0128|consen 664 IRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF-G------- 735 (881)
T ss_pred HHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh-h-------
Confidence 35567899999999999999999999999887777765666788999999999999999999975443332 2
Q ss_pred ecccCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhh
Q 016188 100 NWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEM 179 (394)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l 179 (394)
...|+|+|+|+..|.++++.++ +.+|.+.++.++..+. |+.+|.++|.|.++.++.+++...
T Consensus 736 ----------------K~~v~i~g~pf~gt~e~~k~l~-~~~gn~~~~~~vt~r~-gkpkg~a~v~y~~ea~~s~~~~s~ 797 (881)
T KOG0128|consen 736 ----------------KISVAISGPPFQGTKEELKSLA-SKTGNVTSLRLVTVRA-GKPKGKARVDYNTEADASRKVASV 797 (881)
T ss_pred ----------------hhhhheeCCCCCCchHHHHhhc-cccCCccccchhhhhc-cccccceeccCCCcchhhhhcccc
Confidence 3469999999999999999999 9999999999887765 999999999999999999999888
Q ss_pred CCeeecCcceEEeecCCC
Q 016188 180 NGVFCSTRPMRISAATPK 197 (394)
Q Consensus 180 ~~~~~~g~~l~v~~a~~~ 197 (394)
+...+..+.+.|..+++.
T Consensus 798 d~~~~rE~~~~v~vsnp~ 815 (881)
T KOG0128|consen 798 DVAGKRENNGEVQVSNPE 815 (881)
T ss_pred hhhhhhhcCccccccCCc
Confidence 877777777777776653
No 121
>smart00361 RRM_1 RNA recognition motif.
Probab=99.08 E-value=3.8e-10 Score=79.31 Aligned_cols=61 Identities=21% Similarity=0.330 Sum_probs=52.9
Q ss_pred HHHHHHHHh----hcCCceEEE-EeecCCC--CCCcceEEEEEcCHHHHHHHHHHcCCCCCCCcccee
Q 016188 37 ENYLSSCFA----HTGEVVSIK-IIRNKIT--GQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNF 97 (394)
Q Consensus 37 e~~l~~~f~----~~G~v~~v~-i~~~~~~--g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v 97 (394)
+++|+++|+ +||.|.+|. +..++.+ +.++|+|||+|.+.++|.+|++.|+|..+.++.+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999995 6666555 889999999999999999999999999999966543
No 122
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.08 E-value=2.7e-10 Score=109.63 Aligned_cols=79 Identities=29% Similarity=0.624 Sum_probs=74.9
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccCCCCC
Q 016188 233 NTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVTG 311 (394)
Q Consensus 233 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~~ 311 (394)
+++||||+|+..+++.||..+|+.||.|.+|.+..+++||||++....+|.+|+.+|++..+.++.|+|.||.....+.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ks 499 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPKS 499 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcch
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999999766554
No 123
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.07 E-value=1.1e-09 Score=101.99 Aligned_cols=75 Identities=32% Similarity=0.436 Sum_probs=65.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEccc
Q 016188 233 NTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRK 306 (394)
Q Consensus 233 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 306 (394)
...|||.|||.+++.++|+++|..||.|+...|... .+||||+|.+.++++.||.+- -..|++++|.|+..+.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEeccc
Confidence 345999999999999999999999999999887652 289999999999999998876 5779999999998776
Q ss_pred CC
Q 016188 307 QD 308 (394)
Q Consensus 307 ~~ 308 (394)
..
T Consensus 367 ~~ 368 (419)
T KOG0116|consen 367 GF 368 (419)
T ss_pred cc
Confidence 44
No 124
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.04 E-value=3.1e-10 Score=101.53 Aligned_cols=176 Identities=22% Similarity=0.302 Sum_probs=139.9
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeeeec
Q 016188 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNW 101 (394)
Q Consensus 22 ~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~~~ 101 (394)
..+++|++++.+.+.+.++..++..+|.+..+.+.....+..+++++++.|...+.+..|+.......+..+.....+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 57889999999999999999999999988888777766678899999999999999999997543334444333333333
Q ss_pred ccCCCCCC---CCCCCC-cceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHH
Q 016188 102 ASFGIGEK---RPDAGP-EHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMT 177 (394)
Q Consensus 102 ~~~~~~~~---~~~~~~-~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~ 177 (394)
.......+ ...... ....+|++++.++++++|..+| ..+|.|..+++..++.++.++||++|.|....++..++.
T Consensus 167 ~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~-~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 167 RRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHF-VSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALN 245 (285)
T ss_pred cccccccchhcccccCccccceeecccccccchHHHhhhc-cCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhh
Confidence 22211111 112233 3445599999999999999999 899999999999999999999999999999999999997
Q ss_pred hhCCeeecCcceEEeecCCCCC
Q 016188 178 EMNGVFCSTRPMRISAATPKKT 199 (394)
Q Consensus 178 ~l~~~~~~g~~l~v~~a~~~~~ 199 (394)
. +...+.++++.+.+..+...
T Consensus 246 ~-~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 246 D-QTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred c-ccCcccCcccccccCCCCcc
Confidence 6 78889999999988876644
No 125
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=4.3e-10 Score=98.75 Aligned_cols=84 Identities=27% Similarity=0.472 Sum_probs=79.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEee
Q 016188 114 GPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISA 193 (394)
Q Consensus 114 ~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~ 193 (394)
+|.+.|||..|.+-++.++|.-+| +.||.|..|.+++|+.||.+.-||||+|.+.++++.|.-+|++..|+.+.|.|.+
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIF-SrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIF-SRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCcceEEEEecCCcccccchhhHH-hhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 568999999999999999999999 9999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCC
Q 016188 194 ATPKK 198 (394)
Q Consensus 194 a~~~~ 198 (394)
+.+-.
T Consensus 316 SQSVs 320 (479)
T KOG0415|consen 316 SQSVS 320 (479)
T ss_pred hhhhh
Confidence 76543
No 126
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.02 E-value=3.9e-10 Score=110.29 Aligned_cols=163 Identities=22% Similarity=0.389 Sum_probs=139.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEee
Q 016188 114 GPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISA 193 (394)
Q Consensus 114 ~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~ 193 (394)
..+++||++||...+++.+|+..| ..+|.|++|.|...+. +.-..|+||.|.+...+..|...+.+..|....+.+.+
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af-~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAF-DESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhh-hhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 457789999999999999999999 8999999999887643 44455999999999999999988888888666665554
Q ss_pred cCCCCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEE
Q 016188 194 ATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGF 273 (394)
Q Consensus 194 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~g~~f 273 (394)
...+ ....+.+++++|...+....|...|..||.|..|.+.....+++
T Consensus 448 G~~k--------------------------------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~yay 495 (975)
T KOG0112|consen 448 GQPK--------------------------------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQPYAY 495 (975)
T ss_pred cccc--------------------------------cccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCccee
Confidence 4331 22457899999999999999999999999999999998889999
Q ss_pred EEeCchHHHHHHHHHhCCceeCc--EEEEEEEcccCCCC
Q 016188 274 VQFAARASAEEAILRMQGHMIGQ--QQVRISWGRKQDVT 310 (394)
Q Consensus 274 V~f~~~~~a~~a~~~l~g~~~~g--~~l~v~~a~~~~~~ 310 (394)
|.|.+...++.|+..|.|..|++ +.|.|.|+......
T Consensus 496 i~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~~~ 534 (975)
T KOG0112|consen 496 IQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPPGAT 534 (975)
T ss_pred eecccCccchhhHHHHhcCcCCCCCcccccccccCCCCC
Confidence 99999999999999999999985 68999999855433
No 127
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.01 E-value=8.5e-10 Score=98.70 Aligned_cols=175 Identities=23% Similarity=0.299 Sum_probs=136.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEee
Q 016188 114 GPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISA 193 (394)
Q Consensus 114 ~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~ 193 (394)
....++|++++.+.+.+.++..++ ...|.+....+........++|++.+.|...+.+..|+.........++.+....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~-~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl 164 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFS-SEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDL 164 (285)
T ss_pred cccccccccccccchhhccccccc-hhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcc
Confidence 356789999999999999888889 7888877777777666788999999999999999999965444566666666655
Q ss_pred cCCCCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEE-EcCCCCCCCHHHHHHHhcccCCeEEEEEeCC----
Q 016188 194 ATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIF-VGNLDPNVTEEELKQTFLHFGEIVNVKIPMG---- 268 (394)
Q Consensus 194 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~---- 268 (394)
........... ..........+++ |++|+..+++++|+.+|..+|.|..++++..
T Consensus 165 ~~~~~~~~~n~--------------------~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~ 224 (285)
T KOG4210|consen 165 NTRRGLRPKNK--------------------LSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESG 224 (285)
T ss_pred cccccccccch--------------------hcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCcc
Confidence 54443211000 0011112234445 9999999999999999999999999999864
Q ss_pred --CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccCCCC
Q 016188 269 --RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVT 310 (394)
Q Consensus 269 --~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~ 310 (394)
+++++|.|.+...+..++.. ....+.++++.+.+..+....
T Consensus 225 ~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 225 DSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred chhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCccc
Confidence 68999999999999999887 788899999999988876543
No 128
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=7.2e-10 Score=97.40 Aligned_cols=87 Identities=18% Similarity=0.306 Sum_probs=77.4
Q ss_pred CCCCCCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCc
Q 016188 14 HHHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGT 93 (394)
Q Consensus 14 ~~~~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~ 93 (394)
..+.....+...|||..|.+-++++||+-+|+.||.|.+|.|+++..+|.+.-||||+|.+.+++++|.-.|++..|..+
T Consensus 230 lpdAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDr 309 (479)
T KOG0415|consen 230 LPDADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDR 309 (479)
T ss_pred CcccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccc
Confidence 33444556788999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred cceeeee
Q 016188 94 EQNFRLN 100 (394)
Q Consensus 94 ~~~v~~~ 100 (394)
.+.|-++
T Consensus 310 RIHVDFS 316 (479)
T KOG0415|consen 310 RIHVDFS 316 (479)
T ss_pred eEEeehh
Confidence 5555443
No 129
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.95 E-value=9.8e-10 Score=92.48 Aligned_cols=168 Identities=28% Similarity=0.423 Sum_probs=126.8
Q ss_pred ceEEEcCCCCcCCHHH-H--HHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeeee
Q 016188 24 RTLWIGDLQYWFDENY-L--SSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLN 100 (394)
Q Consensus 24 ~~v~V~nLp~~~~e~~-l--~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~~ 100 (394)
-.+++.++-.++..+- | ...|+.+-.++..+++++. .+..++++|+.|..-..-.++-..-+++++.... |++.
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~--VR~a 173 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPP--VRLA 173 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcc--eeec
Confidence 4566777666654444 3 6777777667777777776 6777899999998777666665554555554432 3332
Q ss_pred cccCCCCCCCC---CCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHH
Q 016188 101 WASFGIGEKRP---DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMT 177 (394)
Q Consensus 101 ~~~~~~~~~~~---~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~ 177 (394)
-.. ..+... -.....+||.+.|..+++.+.|...| .+|-.....++++|..||+++||+||.|.+.+++.+|++
T Consensus 174 ~gt--swedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf-~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmr 250 (290)
T KOG0226|consen 174 AGT--SWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAF-KKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMR 250 (290)
T ss_pred ccc--ccCCcccccCccccceeecccccccccHHHHHHHH-HhccchhhccccccccccccccceeeeecCHHHHHHHHH
Confidence 221 111111 22346789999999999999999999 899999999999999999999999999999999999999
Q ss_pred hhCCeeecCcceEEeecCCC
Q 016188 178 EMNGVFCSTRPMRISAATPK 197 (394)
Q Consensus 178 ~l~~~~~~g~~l~v~~a~~~ 197 (394)
++++..++.+.|.+..+.-+
T Consensus 251 em~gkyVgsrpiklRkS~wk 270 (290)
T KOG0226|consen 251 EMNGKYVGSRPIKLRKSEWK 270 (290)
T ss_pred hhcccccccchhHhhhhhHH
Confidence 99999999999988665433
No 130
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.92 E-value=5.2e-09 Score=85.74 Aligned_cols=90 Identities=22% Similarity=0.355 Sum_probs=80.1
Q ss_pred CCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCc
Q 016188 108 EKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTR 187 (394)
Q Consensus 108 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~ 187 (394)
..++.......+++..+|.-+.+.+|..+|++.+|.|..+++-+++.||.++|||||+|++.+.|.-|-+.||+..+.++
T Consensus 41 ~~~p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~ 120 (214)
T KOG4208|consen 41 REKPEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEH 120 (214)
T ss_pred ccCCccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhh
Confidence 34555666778999999999999999999954448899999989999999999999999999999999999999999999
Q ss_pred ceEEeecCCC
Q 016188 188 PMRISAATPK 197 (394)
Q Consensus 188 ~l~v~~a~~~ 197 (394)
.|.+++-.+.
T Consensus 121 lL~c~vmppe 130 (214)
T KOG4208|consen 121 LLECHVMPPE 130 (214)
T ss_pred eeeeEEeCch
Confidence 9999887665
No 131
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.90 E-value=2.3e-09 Score=100.06 Aligned_cols=179 Identities=20% Similarity=0.261 Sum_probs=118.3
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEE
Q 016188 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191 (394)
Q Consensus 112 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v 191 (394)
.+.+.++|+|-|||..|++++|++.| +.||+|++|+.- -..+|.+||+|.+..+|++|+++|++.++.|+.+..
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f-~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~ 144 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIF-GAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKR 144 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHH-Hhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcC
Confidence 35667899999999999999999999 899999996543 346789999999999999999999999999999882
Q ss_pred eecCCCCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcE
Q 016188 192 SAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGC 271 (394)
Q Consensus 192 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~g~ 271 (394)
........ ..+.. ..-......+.....+... +...+ ++.|++..+..-++..|.-+|.+..-....-+-.
T Consensus 145 ~~~~~~~~-~~~~~------~~~~~~~~~p~a~s~pgg~-~~~~~-~g~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~hq 215 (549)
T KOG4660|consen 145 PGGARRAM-GLQSG------TSFLNHFGSPLANSPPGGW-PRGQL-FGMLSPTRSSILLEHISSVDGSSPGRETPLLNHQ 215 (549)
T ss_pred CCcccccc-hhccc------chhhhhccchhhcCCCCCC-cCCcc-eeeeccchhhhhhhcchhccCccccccccchhhh
Confidence 22111110 00000 0000000001111111111 12223 3338888887777777888887776222222347
Q ss_pred EEEEeCchHHHHHHHHHhCCceeCcEEEEEEEccc
Q 016188 272 GFVQFAARASAEEAILRMQGHMIGQQQVRISWGRK 306 (394)
Q Consensus 272 ~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 306 (394)
-|++|.+..++..+.... |+.+.+....+.++.+
T Consensus 216 ~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 216 RFVEFADNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred hhhhhccccchhhcccCC-ceecCCCCceEEecCC
Confidence 788999999887776644 7778888877777765
No 132
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.90 E-value=2.5e-09 Score=104.73 Aligned_cols=166 Identities=19% Similarity=0.334 Sum_probs=137.9
Q ss_pred CcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceee
Q 016188 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (394)
Q Consensus 19 ~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~ 98 (394)
.....++||++||+..+++.+|+..|..+|.|.+|.|.+-. -+....|+||.|.+.+.+-.|...+.+..|....+.+.
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 34456899999999999999999999999999999987765 56667899999999999999998888888766554444
Q ss_pred eecccCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHh
Q 016188 99 LNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTE 178 (394)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~ 178 (394)
+-.. ...+.+.+++++|.+.+....|...| ..||.|..|.+-.. --|++|.|.+...++.|++.
T Consensus 447 lG~~---------kst~ttr~~sgglg~w~p~~~l~r~f-d~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~ 510 (975)
T KOG0112|consen 447 LGQP---------KSTPTTRLQSGGLGPWSPVSRLNREF-DRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHD 510 (975)
T ss_pred cccc---------ccccceeeccCCCCCCChHHHHHHHh-hccCcceeeecccC------CcceeeecccCccchhhHHH
Confidence 4322 34557889999999999999999999 89999998776543 33999999999999999999
Q ss_pred hCCeee--cCcceEEeecCCCCCcc
Q 016188 179 MNGVFC--STRPMRISAATPKKTTG 201 (394)
Q Consensus 179 l~~~~~--~g~~l~v~~a~~~~~~~ 201 (394)
+.+..+ ..+.+.|.++.......
T Consensus 511 ~rgap~G~P~~r~rvdla~~~~~~P 535 (975)
T KOG0112|consen 511 MRGAPLGGPPRRLRVDLASPPGATP 535 (975)
T ss_pred HhcCcCCCCCcccccccccCCCCCh
Confidence 999998 45678888887655433
No 133
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.90 E-value=3.3e-09 Score=102.30 Aligned_cols=107 Identities=22% Similarity=0.309 Sum_probs=80.4
Q ss_pred cceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeeeecc
Q 016188 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWA 102 (394)
Q Consensus 23 ~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~~~~ 102 (394)
++||||++|+..++|.||..+|+.||.|++|.++..+ +||||.+....+|.+|+.+|++..+.. ..|++.|+
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R------~cAfI~M~~RqdA~kalqkl~n~kv~~--k~Iki~Wa 492 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR------GCAFIKMVRRQDAEKALQKLSNVKVAD--KTIKIAWA 492 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC------ceeEEEEeehhHHHHHHHHHhcccccc--eeeEEeee
Confidence 4799999999999999999999999999999888764 999999999999999999999888877 77888888
Q ss_pred cCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHH
Q 016188 103 SFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETF 137 (394)
Q Consensus 103 ~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f 137 (394)
-..--...-..--...+=|.-||++.-..+++.+.
T Consensus 493 ~g~G~kse~k~~wD~~lGVt~IP~~kLt~dl~~~~ 527 (894)
T KOG0132|consen 493 VGKGPKSEYKDYWDVELGVTYIPWEKLTDDLEAWC 527 (894)
T ss_pred ccCCcchhhhhhhhcccCeeEeehHhcCHHHHHhh
Confidence 54311110000111223355567765555555555
No 134
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.86 E-value=5.7e-10 Score=91.77 Aligned_cols=138 Identities=27% Similarity=0.321 Sum_probs=112.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEe
Q 016188 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRIS 192 (394)
Q Consensus 113 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~ 192 (394)
.+..++|||.|+...++++.|.++| =+.|+|..|.|..++. ++.+ ||||.|.++-.+..|++.+|+..+.++.+.+.
T Consensus 6 ae~drtl~v~n~~~~v~eelL~Elf-iqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELF-IQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHh-hccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 3457899999999999999999999 6999999999988765 6666 99999999999999999999999988888764
Q ss_pred ecCCCCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC----
Q 016188 193 AATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG---- 268 (394)
Q Consensus 193 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~---- 268 (394)
.-...... -|...++++.+...|+.-|.+..+++..+
T Consensus 83 ~r~G~sha---------------------------------------pld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~r 123 (267)
T KOG4454|consen 83 LRCGNSHA---------------------------------------PLDERVTEEILYEVFSQAGPIEGVRIPTDNDGR 123 (267)
T ss_pred cccCCCcc---------------------------------------hhhhhcchhhheeeecccCCCCCccccccccCC
Confidence 43221110 16677889999999999999999998763
Q ss_pred -CcEEEEEeCchHHHHHHHHHhCCc
Q 016188 269 -RGCGFVQFAARASAEEAILRMQGH 292 (394)
Q Consensus 269 -~g~~fV~f~~~~~a~~a~~~l~g~ 292 (394)
+.++|+++....+.-.++....+.
T Consensus 124 nrn~~~~~~qr~~~~P~~~~~y~~l 148 (267)
T KOG4454|consen 124 NRNFGFVTYQRLCAVPFALDLYQGL 148 (267)
T ss_pred ccCccchhhhhhhcCcHHhhhhccc
Confidence 578999888777766676665544
No 135
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.84 E-value=8.9e-09 Score=84.39 Aligned_cols=81 Identities=25% Similarity=0.331 Sum_probs=73.1
Q ss_pred cceEEEcCCCCcCCHHHHHHHHhhc-CCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeeeec
Q 016188 23 VRTLWIGDLQYWFDENYLSSCFAHT-GEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNW 101 (394)
Q Consensus 23 ~~~v~V~nLp~~~~e~~l~~~f~~~-G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~~~ 101 (394)
.-.++|..||..+-+.++..+|.++ |.|..+++.+++.||-++|||||+|++++.|+-|.+.||+-.+.+.-+.+++..
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmp 128 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMP 128 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeC
Confidence 3568999999999999999999998 778888888999999999999999999999999999999999999877777765
Q ss_pred cc
Q 016188 102 AS 103 (394)
Q Consensus 102 ~~ 103 (394)
..
T Consensus 129 pe 130 (214)
T KOG4208|consen 129 PE 130 (214)
T ss_pred ch
Confidence 53
No 136
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.84 E-value=6e-09 Score=97.05 Aligned_cols=77 Identities=19% Similarity=0.409 Sum_probs=70.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcc
Q 016188 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (394)
Q Consensus 232 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 305 (394)
-...|||.+|...+...||+.+|++||+|+-.+++.+ ++|+||++.+.++|.+||..||-+++.|+.|.|+.++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 3468999999999999999999999999999999875 7899999999999999999999999999999999988
Q ss_pred cCC
Q 016188 306 KQD 308 (394)
Q Consensus 306 ~~~ 308 (394)
...
T Consensus 484 NEp 486 (940)
T KOG4661|consen 484 NEP 486 (940)
T ss_pred cCc
Confidence 543
No 137
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.83 E-value=3.6e-09 Score=89.15 Aligned_cols=164 Identities=25% Similarity=0.363 Sum_probs=120.4
Q ss_pred eEEEcCCCCCCCHHH-H--HHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeec
Q 016188 118 SIFVGDLAPDVTDYL-L--QETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (394)
Q Consensus 118 ~l~v~nlp~~~t~~~-l--~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a 194 (394)
..+++++-..+..+- | ...| +.+..+....++.+.. +.-++++|+.|.....-..+-..-+++.+..+.|++...
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f-~~~p~L~ktk~v~~~p-~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~g 175 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVF-SEYPSLVKTKLVRDRP-QPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAG 175 (290)
T ss_pred cccccccccccCCCCCCcchhhh-ccchhhhhhhhhhcCC-CccCcccccCcchhhhhhhhccccccccccCcceeeccc
Confidence 345555544444333 2 5566 6666677777777654 677889999999888777777666666666666555443
Q ss_pred CCCCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------
Q 016188 195 TPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------ 268 (394)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~------ 268 (394)
+.-... ...+...+..+||.|.|...++++.|-..|.+|-.....++.++
T Consensus 176 tswedP------------------------sl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKS 231 (290)
T KOG0226|consen 176 TSWEDP------------------------SLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKS 231 (290)
T ss_pred cccCCc------------------------ccccCccccceeecccccccccHHHHHHHHHhccchhhcccccccccccc
Confidence 322211 12345567799999999999999999999999977666666654
Q ss_pred CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccC
Q 016188 269 RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307 (394)
Q Consensus 269 ~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 307 (394)
+||+||.|.++.++..|+..|+|+.++.+.|++..+..+
T Consensus 232 kgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~wk 270 (290)
T KOG0226|consen 232 KGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEWK 270 (290)
T ss_pred ccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhHH
Confidence 799999999999999999999999999999988765533
No 138
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.74 E-value=4.9e-08 Score=86.06 Aligned_cols=86 Identities=26% Similarity=0.392 Sum_probs=71.2
Q ss_pred CCCCCCCCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCC
Q 016188 12 HQHHHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMP 91 (394)
Q Consensus 12 ~~~~~~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~ 91 (394)
.+...+-......+|||++|-..++|.+|++.|.+||+|.+|.+.... ++|||+|.+.++|+.|.+.+-+ .+.
T Consensus 217 ~~~lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n-~lv 289 (377)
T KOG0153|consen 217 AGTLEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFN-KLV 289 (377)
T ss_pred ccccCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcc-eee
Confidence 334455566777999999999999999999999999999999998875 7999999999999999987655 333
Q ss_pred CccceeeeecccC
Q 016188 92 GTEQNFRLNWASF 104 (394)
Q Consensus 92 ~~~~~v~~~~~~~ 104 (394)
....++.+.|...
T Consensus 290 I~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 290 INGFRLKIKWGRP 302 (377)
T ss_pred ecceEEEEEeCCC
Confidence 3447777779876
No 139
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.66 E-value=7.8e-08 Score=89.81 Aligned_cols=84 Identities=24% Similarity=0.378 Sum_probs=76.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEee
Q 016188 114 GPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISA 193 (394)
Q Consensus 114 ~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~ 193 (394)
...++|||.+|+..+...+|+++| ++||.|...+++++..+.-.+=|+||++.+.++|.+||+.|+.+++.|+.|.|..
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlF-SKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLF-SKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred ccccceeeeccccchhhhHHHHHH-HHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 346789999999999999999999 9999999999999876666677999999999999999999999999999999998
Q ss_pred cCCCC
Q 016188 194 ATPKK 198 (394)
Q Consensus 194 a~~~~ 198 (394)
+....
T Consensus 482 aKNEp 486 (940)
T KOG4661|consen 482 AKNEP 486 (940)
T ss_pred cccCc
Confidence 86543
No 140
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.62 E-value=3.9e-07 Score=67.19 Aligned_cols=81 Identities=21% Similarity=0.339 Sum_probs=66.9
Q ss_pred ceEEEcCCCCcCCHHHHHHHHhhc--CCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCC--ccceeee
Q 016188 24 RTLWIGDLQYWFDENYLSSCFAHT--GEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPG--TEQNFRL 99 (394)
Q Consensus 24 ~~v~V~nLp~~~~e~~l~~~f~~~--G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~--~~~~v~~ 99 (394)
.||+|+|||...+.++|.+++... |...-+-++.|..++.+.|||||.|.+.++|.+..+.++|..|.. +...+.+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999998553 456667777777788899999999999999999999999999964 3445566
Q ss_pred ecccC
Q 016188 100 NWASF 104 (394)
Q Consensus 100 ~~~~~ 104 (394)
.+|..
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 66643
No 141
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.59 E-value=2.1e-07 Score=80.37 Aligned_cols=80 Identities=23% Similarity=0.368 Sum_probs=71.7
Q ss_pred cCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeee
Q 016188 20 LEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRL 99 (394)
Q Consensus 20 ~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~ 99 (394)
+....+|+|.|||..+.++||+++|..||.+..+.+..++ +|.+.|.|-|.|...++|..|++.+++..+.+..+.+.+
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3444779999999999999999999999999999888887 999999999999999999999999999999997765555
Q ss_pred e
Q 016188 100 N 100 (394)
Q Consensus 100 ~ 100 (394)
.
T Consensus 159 i 159 (243)
T KOG0533|consen 159 I 159 (243)
T ss_pred e
Confidence 4
No 142
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.58 E-value=5.7e-07 Score=66.31 Aligned_cols=79 Identities=18% Similarity=0.237 Sum_probs=67.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhhC-CCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeec----CcceEE
Q 016188 117 HSIFVGDLAPDVTDYLLQETFRSQY-PSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCS----TRPMRI 191 (394)
Q Consensus 117 ~~l~v~nlp~~~t~~~l~~~f~~~~-G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~----g~~l~v 191 (394)
++|+|+|||...|.++|.+++.+.+ |....+.++.|..++.+.|||||.|.+.+.|.+..+.++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 5899999999999999999995443 66788899999889999999999999999999999999998763 445566
Q ss_pred eecC
Q 016188 192 SAAT 195 (394)
Q Consensus 192 ~~a~ 195 (394)
.+|.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 6664
No 143
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.52 E-value=2.1e-08 Score=90.32 Aligned_cols=152 Identities=22% Similarity=0.397 Sum_probs=122.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCee-ecCcceEEeecC
Q 016188 117 HSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVF-CSTRPMRISAAT 195 (394)
Q Consensus 117 ~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~-~~g~~l~v~~a~ 195 (394)
+.++++||.+.++.++|+..|...--....-.+++ .||+||.+.+...|.+|++.++++. +.|+.+.+..+.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 57899999999999999999932211122222222 4799999999999999999999865 799999998887
Q ss_pred CCCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeC-CCc--EE
Q 016188 196 PKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM-GRG--CG 272 (394)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~-~~g--~~ 272 (394)
+++.+. +++-|.|+|+..-|+.|..+...||.++.+.... +.- ..
T Consensus 75 ~kkqrs--------------------------------rk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavv 122 (584)
T KOG2193|consen 75 PKKQRS--------------------------------RKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVV 122 (584)
T ss_pred hHHHHh--------------------------------hhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHH
Confidence 776542 5577999999999999999999999999987643 333 33
Q ss_pred EEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccC
Q 016188 273 FVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307 (394)
Q Consensus 273 fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 307 (394)
-|+|.+.+.++.|+..|+|..+....++|.|--.+
T Consensus 123 nvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPde 157 (584)
T KOG2193|consen 123 NVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPDE 157 (584)
T ss_pred HHHHHHHHHHHHHHHhhcchHhhhhhhhcccCchh
Confidence 46899999999999999999999999999886543
No 144
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.51 E-value=3.7e-07 Score=87.64 Aligned_cols=82 Identities=40% Similarity=0.737 Sum_probs=74.6
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC---------CcEEEEEeCchHHHHHHHHHhCCceeCcE
Q 016188 227 ADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG---------RGCGFVQFAARASAEEAILRMQGHMIGQQ 297 (394)
Q Consensus 227 ~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~---------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~ 297 (394)
...++..+.|||+||++.++++.|...|..||+|.+++|+.. +.|+||-|-+..+|++|++.|+|..+.+.
T Consensus 168 DdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~ 247 (877)
T KOG0151|consen 168 DDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEY 247 (877)
T ss_pred CCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeee
Confidence 344566789999999999999999999999999999999864 57999999999999999999999999999
Q ss_pred EEEEEEcccCC
Q 016188 298 QVRISWGRKQD 308 (394)
Q Consensus 298 ~l~v~~a~~~~ 308 (394)
.+++-|++.-.
T Consensus 248 e~K~gWgk~V~ 258 (877)
T KOG0151|consen 248 EMKLGWGKAVP 258 (877)
T ss_pred eeeeccccccc
Confidence 99999997544
No 145
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.37 E-value=1.5e-06 Score=75.07 Aligned_cols=83 Identities=29% Similarity=0.423 Sum_probs=74.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeecC
Q 016188 116 EHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAAT 195 (394)
Q Consensus 116 ~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a~ 195 (394)
..+|.|.||+..+++++|+++| ..||.+..+.+-.++. |++.|.|=|.|...++|.+|++.+++..++|+.+.+....
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF-~~~~~~~r~~vhy~~~-G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELF-AEFGELKRVAVHYDRA-GRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred cceeeeecCCcCcchHHHHHHH-HHhccceEEeeccCCC-CCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 4779999999999999999999 7999888887777754 9999999999999999999999999999999999988876
Q ss_pred CCCCc
Q 016188 196 PKKTT 200 (394)
Q Consensus 196 ~~~~~ 200 (394)
.....
T Consensus 161 ~~~~~ 165 (243)
T KOG0533|consen 161 SPSQS 165 (243)
T ss_pred Ccccc
Confidence 55443
No 146
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.35 E-value=1.4e-06 Score=81.45 Aligned_cols=80 Identities=19% Similarity=0.241 Sum_probs=63.8
Q ss_pred cCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeee
Q 016188 20 LEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRL 99 (394)
Q Consensus 20 ~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~ 99 (394)
..+..+|||+|||.++++++|+++|..||+|....|......++...||||+|.+.+++..|++. +...+.++.+.|+-
T Consensus 285 ~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Vee 363 (419)
T KOG0116|consen 285 RADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEE 363 (419)
T ss_pred eecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEe
Confidence 34445699999999999999999999999999998877554455558999999999999999976 45555554444444
Q ss_pred e
Q 016188 100 N 100 (394)
Q Consensus 100 ~ 100 (394)
.
T Consensus 364 k 364 (419)
T KOG0116|consen 364 K 364 (419)
T ss_pred c
Confidence 3
No 147
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.32 E-value=2e-06 Score=74.56 Aligned_cols=77 Identities=26% Similarity=0.477 Sum_probs=70.0
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEE
Q 016188 230 DITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISW 303 (394)
Q Consensus 230 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 303 (394)
..+...+||+|+...+|.+++..+|+.||.|..+.|+.+ ++|+||+|.+.+.++.++. |++..|.|+.++|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 445688999999999999999999999999998888765 6899999999999999988 999999999999998
Q ss_pred cccC
Q 016188 304 GRKQ 307 (394)
Q Consensus 304 a~~~ 307 (394)
.+-.
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 8754
No 148
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.31 E-value=1.5e-06 Score=65.73 Aligned_cols=70 Identities=23% Similarity=0.448 Sum_probs=47.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCc-----eeCcEEEEEEE
Q 016188 234 TTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGH-----MIGQQQVRISW 303 (394)
Q Consensus 234 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~-----~~~g~~l~v~~ 303 (394)
+.|+|.+++..++.++|++.|+.||.|..|.+.++...|+|.|.+.+.|++|+..+.-. .|.+..++++.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 57889999999999999999999999999999998899999999999999999877533 46666666654
No 149
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.29 E-value=3.5e-06 Score=58.98 Aligned_cols=69 Identities=26% Similarity=0.429 Sum_probs=48.5
Q ss_pred cEEEEcCCCCCCCHHH----HHHHhcccC-CeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEccc
Q 016188 234 TTIFVGNLDPNVTEEE----LKQTFLHFG-EIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRK 306 (394)
Q Consensus 234 ~~l~v~nl~~~~t~~~----l~~~F~~~G-~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 306 (394)
..|+|.|||.+.+... |++++..+| +|.+|. .+.|+|.|.+.+.|.+|.+.|+|..+-|++|.|++...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 4689999999887654 556777775 777663 68999999999999999999999999999999999853
No 150
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.29 E-value=1.1e-06 Score=76.17 Aligned_cols=84 Identities=18% Similarity=0.265 Sum_probs=76.5
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEE
Q 016188 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191 (394)
Q Consensus 112 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v 191 (394)
.......+||+|+...++.+++..+| +.+|.|..+.+..|+.++.++||+||+|.+.+.++.++. |++..+.++.+.|
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf-~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHF-ESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hccCCceEEEeccccccccchhhhee-eccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 34557889999999999999999999 899999999999999999999999999999999999996 9999999999998
Q ss_pred eecCCC
Q 016188 192 SAATPK 197 (394)
Q Consensus 192 ~~a~~~ 197 (394)
.+..-.
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 776443
No 151
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.23 E-value=6.6e-06 Score=57.63 Aligned_cols=68 Identities=19% Similarity=0.300 Sum_probs=45.8
Q ss_pred ceEEEcCCCCcCCHHHHH----HHHhhcC-CceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceee
Q 016188 24 RTLWIGDLQYWFDENYLS----SCFAHTG-EVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (394)
Q Consensus 24 ~~v~V~nLp~~~~e~~l~----~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~ 98 (394)
..|+|.|||.+.+...|+ +++..+| .|.+| +.+.|+|.|.+++.|.+|.+.|+|..+.|+.+.+.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 359999999999888765 4555665 46655 12679999999999999999999999999777666
Q ss_pred eec
Q 016188 99 LNW 101 (394)
Q Consensus 99 ~~~ 101 (394)
...
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 553
No 152
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.15 E-value=7.7e-06 Score=78.86 Aligned_cols=79 Identities=30% Similarity=0.582 Sum_probs=66.4
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCC---CCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceee
Q 016188 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKIT---GQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (394)
Q Consensus 22 ~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~---g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~ 98 (394)
-...|||+||++.++++.|...|..||+|..|+|+.-+.. -+.+.|+||.|-+..+|++|++.|+|..+... .++
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~--e~K 250 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEY--EMK 250 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeee--eee
Confidence 3456999999999999999999999999999999866532 24568999999999999999999999998874 344
Q ss_pred eecc
Q 016188 99 LNWA 102 (394)
Q Consensus 99 ~~~~ 102 (394)
+-|.
T Consensus 251 ~gWg 254 (877)
T KOG0151|consen 251 LGWG 254 (877)
T ss_pred eccc
Confidence 4444
No 153
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.10 E-value=3.9e-07 Score=82.34 Aligned_cols=154 Identities=18% Similarity=0.303 Sum_probs=116.8
Q ss_pred ceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCC-CCCCccceeeeecc
Q 016188 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGT-PMPGTEQNFRLNWA 102 (394)
Q Consensus 24 ~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~-~~~~~~~~v~~~~~ 102 (394)
..+||+||.+.++..+|+.+|...---.+=.++.. .+|+||...+..-|.+|++.++++ .+.|+.+.+..+..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 46899999999999999999976522112122222 389999999999999999998885 45675555544443
Q ss_pred cCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCe
Q 016188 103 SFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGV 182 (394)
Q Consensus 103 ~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~ 182 (394)
.. .-++++-|+|+|+....+.|..++ ..||.++.|..... ....-..-|+|...+.+..|+.++++.
T Consensus 76 kk---------qrsrk~Qirnippql~wevld~Ll-~qyg~ve~~eqvnt---~~etavvnvty~~~~~~~~ai~kl~g~ 142 (584)
T KOG2193|consen 76 KK---------QRSRKIQIRNIPPQLQWEVLDSLL-AQYGTVENCEQVNT---DSETAVVNVTYSAQQQHRQAIHKLNGP 142 (584)
T ss_pred HH---------HHhhhhhHhcCCHHHHHHHHHHHH-hccCCHhHhhhhcc---chHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 22 225669999999999999999999 89999998866422 112223447889999999999999999
Q ss_pred eecCcceEEeecCC
Q 016188 183 FCSTRPMRISAATP 196 (394)
Q Consensus 183 ~~~g~~l~v~~a~~ 196 (394)
.+.+..+.+.+...
T Consensus 143 Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 143 QLENQHLKVGYIPD 156 (584)
T ss_pred HhhhhhhhcccCch
Confidence 99999998887543
No 154
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.97 E-value=1.9e-05 Score=51.61 Aligned_cols=52 Identities=33% Similarity=0.615 Sum_probs=45.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHH
Q 016188 234 TTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAI 286 (394)
Q Consensus 234 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~ 286 (394)
+.|-|.+.+.... +.+..+|..||.|.++.+.......+|+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 5678999998764 556669999999999999988999999999999999985
No 155
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.90 E-value=2.4e-05 Score=59.19 Aligned_cols=59 Identities=22% Similarity=0.314 Sum_probs=39.8
Q ss_pred ceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCC
Q 016188 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGT 88 (394)
Q Consensus 24 ~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~ 88 (394)
+.|.|.+++..++.++|++.|+.||.|.-|.+.+.. ..|||.|.+.++|+.|++.+.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhc
Confidence 468999999999999999999999999988887765 67999999999999999876543
No 156
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.86 E-value=5.9e-06 Score=74.18 Aligned_cols=153 Identities=11% Similarity=0.087 Sum_probs=109.7
Q ss_pred eEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCC---CCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeeeec
Q 016188 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKIT---GQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNW 101 (394)
Q Consensus 25 ~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~---g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~~~ 101 (394)
.|-|.||.+.++.+.+..+|...|.|.++.++.+..+ +.....|||.|.+...+..|- .|.++.+-+..+-|.. +
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p-~ 86 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRP-Y 86 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEe-c
Confidence 7999999999999999999999999999999875432 456688999999999888876 4555554443332222 1
Q ss_pred ccC--------------------------CCCCC------------------------CCCCCCcceEEEcCCCCCCCHH
Q 016188 102 ASF--------------------------GIGEK------------------------RPDAGPEHSIFVGDLAPDVTDY 131 (394)
Q Consensus 102 ~~~--------------------------~~~~~------------------------~~~~~~~~~l~v~nlp~~~t~~ 131 (394)
... ...+. ....+-.++++|.+|+..+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 110 00000 0001124578899999999999
Q ss_pred HHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeec
Q 016188 132 LLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCS 185 (394)
Q Consensus 132 ~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~ 185 (394)
++.+.| ..+|+|....+-. +....+|.++|........|+ .+++.++.
T Consensus 167 e~~e~f-~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~hal-r~~gre~k 214 (479)
T KOG4676|consen 167 ESGESF-ERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHAL-RSHGRERK 214 (479)
T ss_pred hhhhhh-hhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHH-Hhcchhhh
Confidence 999999 7899988765543 444568889999999988888 45666554
No 157
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.82 E-value=3.3e-05 Score=69.51 Aligned_cols=176 Identities=18% Similarity=0.199 Sum_probs=112.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCC---CCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEee
Q 016188 117 HSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNT---GRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISA 193 (394)
Q Consensus 117 ~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~t---g~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~ 193 (394)
..|.|.||.++++.+.++.+| ...|.|.++.++.+... ....-.|||.|.+...+..|. .|.++.+-++.|.|..
T Consensus 8 ~vIqvanispsat~dqm~tlF-g~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p 85 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLF-GNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRP 85 (479)
T ss_pred ceeeecccCchhhHHHHHHHH-hhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEe
Confidence 478999999999999999999 89999999999875322 233558999999999999888 5655665555555544
Q ss_pred c-CCCCCcccc-cccc---cccccCCCCCCCC-----------CcccC----------CCCCCCCccEEEEcCCCCCCCH
Q 016188 194 A-TPKKTTGFQ-QQYA---AVKATYPVAAYTT-----------PVQVF----------PADNDITNTTIFVGNLDPNVTE 247 (394)
Q Consensus 194 a-~~~~~~~~~-~~~~---~~~~~~~~~~~~~-----------~~~~~----------~~~~~~~~~~l~v~nl~~~~t~ 247 (394)
. ......... .... ......+..+... +.... .........+++|.+|+..+..
T Consensus 86 ~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l 165 (479)
T KOG4676|consen 86 YGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAIL 165 (479)
T ss_pred cCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcc
Confidence 3 332222110 0000 0000001111000 00000 0011112367999999999999
Q ss_pred HHHHHHhcccCCeEEEEEeC--CCcEEEEEeCchHHHHHHHHHhCCceeC
Q 016188 248 EELKQTFLHFGEIVNVKIPM--GRGCGFVQFAARASAEEAILRMQGHMIG 295 (394)
Q Consensus 248 ~~l~~~F~~~G~i~~~~i~~--~~g~~fV~f~~~~~a~~a~~~l~g~~~~ 295 (394)
.++-+.|..+|.|....+.. +..+|.|+|....+...|+ .++|.++.
T Consensus 166 ~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~hal-r~~gre~k 214 (479)
T KOG4676|consen 166 PESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHAL-RSHGRERK 214 (479)
T ss_pred hhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHH-Hhcchhhh
Confidence 99999999999998766643 3567889998777777764 44555543
No 158
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.73 E-value=5.7e-05 Score=66.94 Aligned_cols=80 Identities=19% Similarity=0.370 Sum_probs=70.3
Q ss_pred CcCCcceEEEcCCCCcCCHHHHHHHHhhcCC--ceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccce
Q 016188 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGE--VVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQN 96 (394)
Q Consensus 19 ~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~--v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~ 96 (394)
++.....+||+||-|-+|++||.+.+...|. +.+++++.++.+|.++|||+|...+..+.++.++.|-.+.|.|..-.
T Consensus 76 ~~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~ 155 (498)
T KOG4849|consen 76 SEGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPT 155 (498)
T ss_pred ccCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCe
Confidence 3444567999999999999999999988875 88999999999999999999999999999999999999999986555
Q ss_pred ee
Q 016188 97 FR 98 (394)
Q Consensus 97 v~ 98 (394)
|.
T Consensus 156 V~ 157 (498)
T KOG4849|consen 156 VL 157 (498)
T ss_pred ee
Confidence 43
No 159
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.69 E-value=3.3e-05 Score=65.74 Aligned_cols=71 Identities=24% Similarity=0.443 Sum_probs=61.4
Q ss_pred ceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCC--------CCC----cceEEEEEcCHHHHHHHHHHcCCCCCC
Q 016188 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKIT--------GQP----EGYGFVEFVSHAAAERVLQTYNGTPMP 91 (394)
Q Consensus 24 ~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~--------g~~----~g~afV~f~~~e~A~~a~~~l~~~~~~ 91 (394)
-.||+++||+.+...-|+++|+.||.|-.|-+.....+ |.+ -.-+||+|.+...|+.+...||+..|.
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 47999999999999999999999999999988776654 222 234789999999999999999999999
Q ss_pred Ccc
Q 016188 92 GTE 94 (394)
Q Consensus 92 ~~~ 94 (394)
|+.
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 854
No 160
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.65 E-value=0.00014 Score=65.27 Aligned_cols=81 Identities=25% Similarity=0.324 Sum_probs=69.9
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhcccCCeEE--------EEEeC------CCcEEEEEeCchHHHHHHHHHhCCceeC
Q 016188 230 DITNTTIFVGNLDPNVTEEELKQTFLHFGEIVN--------VKIPM------GRGCGFVQFAARASAEEAILRMQGHMIG 295 (394)
Q Consensus 230 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~--------~~i~~------~~g~~fV~f~~~~~a~~a~~~l~g~~~~ 295 (394)
.....+|||-+|+..+++++|.++|.++|.|.. |.|-+ .|+-|.|+|.+...|+.|+.-++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 455678999999999999999999999998764 23322 3789999999999999999999999999
Q ss_pred cEEEEEEEcccCCCC
Q 016188 296 QQQVRISWGRKQDVT 310 (394)
Q Consensus 296 g~~l~v~~a~~~~~~ 310 (394)
+..|+|.+|..+...
T Consensus 143 gn~ikvs~a~~r~~v 157 (351)
T KOG1995|consen 143 GNTIKVSLAERRTGV 157 (351)
T ss_pred CCCchhhhhhhccCc
Confidence 999999999876643
No 161
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.60 E-value=0.0004 Score=61.72 Aligned_cols=69 Identities=17% Similarity=0.278 Sum_probs=56.6
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhcccC--CeEEEEEeCC------CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEE
Q 016188 233 NTTIFVGNLDPNVTEEELKQTFLHFG--EIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRI 301 (394)
Q Consensus 233 ~~~l~v~nl~~~~t~~~l~~~F~~~G--~i~~~~i~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v 301 (394)
..++||+||-+.+|++||.+.....| .+.+++++.+ ||||.|...+..+.++.++.|..++|.|..-.|
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 45789999999999999999887776 4556666543 799999999999999999999999999874333
No 162
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.59 E-value=0.00016 Score=47.15 Aligned_cols=52 Identities=21% Similarity=0.337 Sum_probs=42.9
Q ss_pred ceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHH
Q 016188 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVL 82 (394)
Q Consensus 24 ~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~ 82 (394)
+.|-|.+.+++..+. |...|..||+|.++.+.. .....||.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 568899999887755 555888999999987763 2478999999999999985
No 163
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.58 E-value=0.0001 Score=66.00 Aligned_cols=85 Identities=22% Similarity=0.265 Sum_probs=76.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhhCCCee--------EEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeee
Q 016188 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVR--------GAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFC 184 (394)
Q Consensus 113 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~--------~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~ 184 (394)
.....+|||.+||..+++.+|.++| .+++.|. .|.|.++++|++.+|-|.|.|.+...|..|+.-+++..+
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f-~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFF-LQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred ccccccceeeccCccchHHHHHHHH-hhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 3446789999999999999999999 8998775 377889999999999999999999999999999999999
Q ss_pred cCcceEEeecCCCC
Q 016188 185 STRPMRISAATPKK 198 (394)
Q Consensus 185 ~g~~l~v~~a~~~~ 198 (394)
.+..|+|..+..+.
T Consensus 142 ~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 142 CGNTIKVSLAERRT 155 (351)
T ss_pred cCCCchhhhhhhcc
Confidence 99999998886654
No 164
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.54 E-value=0.00016 Score=63.92 Aligned_cols=74 Identities=9% Similarity=0.258 Sum_probs=57.2
Q ss_pred ceEEEcCCCCcCCHHHH------HHHHhhcCCceEEEEeecCCC-CCCcceE--EEEEcCHHHHHHHHHHcCCCCCCCcc
Q 016188 24 RTLWIGDLQYWFDENYL------SSCFAHTGEVVSIKIIRNKIT-GQPEGYG--FVEFVSHAAAERVLQTYNGTPMPGTE 94 (394)
Q Consensus 24 ~~v~V~nLp~~~~e~~l------~~~f~~~G~v~~v~i~~~~~~-g~~~g~a--fV~f~~~e~A~~a~~~l~~~~~~~~~ 94 (394)
.-|||-+||+.+..|++ .++|.+||.|..|.|.+...+ +...+.+ ||.|.+.|+|.+||...+|..+.|+.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 46899999998877773 489999999988766554321 2223333 99999999999999999999999965
Q ss_pred cee
Q 016188 95 QNF 97 (394)
Q Consensus 95 ~~v 97 (394)
++.
T Consensus 195 lka 197 (480)
T COG5175 195 LKA 197 (480)
T ss_pred Eee
Confidence 444
No 165
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.49 E-value=0.00071 Score=50.35 Aligned_cols=72 Identities=21% Similarity=0.316 Sum_probs=54.2
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhcccCCeEEEE-------------EeCCCcEEEEEeCchHHHHHHHHHhCCceeCcE-E
Q 016188 233 NTTIFVGNLDPNVTEEELKQTFLHFGEIVNVK-------------IPMGRGCGFVQFAARASAEEAILRMQGHMIGQQ-Q 298 (394)
Q Consensus 233 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~-------------i~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~-~ 298 (394)
.+.|.|-+.|+. ....|.++|++||.|.+.. ++......-|+|+++.+|.+|| ..||..|+|. .
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCcEE
Confidence 467889999988 4677888999999998885 5566789999999999999996 5599999885 5
Q ss_pred EEEEEccc
Q 016188 299 VRISWGRK 306 (394)
Q Consensus 299 l~v~~a~~ 306 (394)
+-|.++++
T Consensus 84 vGV~~~~~ 91 (100)
T PF05172_consen 84 VGVKPCDP 91 (100)
T ss_dssp EEEEE-HH
T ss_pred EEEEEcHH
Confidence 56777753
No 166
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.47 E-value=0.00029 Score=61.22 Aligned_cols=59 Identities=27% Similarity=0.324 Sum_probs=51.2
Q ss_pred HHHHHHHhcccCCeEEEEEeCCC-------cEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcc
Q 016188 247 EEELKQTFLHFGEIVNVKIPMGR-------GCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (394)
Q Consensus 247 ~~~l~~~F~~~G~i~~~~i~~~~-------g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 305 (394)
++++++.+++||.|.+|.|+... --.||+|+..++|.+|+..|||+.|+||.++.+|-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 56788889999999999887642 357999999999999999999999999999887654
No 167
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.40 E-value=9e-05 Score=63.18 Aligned_cols=67 Identities=18% Similarity=0.392 Sum_probs=59.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCC------------------cEEEEEeCchHHHHHHHHHhCCce
Q 016188 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGR------------------GCGFVQFAARASAEEAILRMQGHM 293 (394)
Q Consensus 232 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~------------------g~~fV~f~~~~~a~~a~~~l~g~~ 293 (394)
..-.||+++||+.+.-..|+++|+.||.|-+|.+-+.. .-|+|+|.+-..|..+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 34689999999999999999999999999999996531 247899999999999999999999
Q ss_pred eCcEE
Q 016188 294 IGQQQ 298 (394)
Q Consensus 294 ~~g~~ 298 (394)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99864
No 168
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.35 E-value=0.00052 Score=60.80 Aligned_cols=81 Identities=19% Similarity=0.377 Sum_probs=63.9
Q ss_pred cceEEEcCCCCCCCHHH------HHHHHHhhCCCeeEEEEeeCCCC-CCCccE--EEEEeCCHHHHHHHHHhhCCeeecC
Q 016188 116 EHSIFVGDLAPDVTDYL------LQETFRSQYPSVRGAKVVTDPNT-GRSKGY--GFVKFLDENERNRAMTEMNGVFCST 186 (394)
Q Consensus 116 ~~~l~v~nlp~~~t~~~------l~~~f~~~~G~v~~v~i~~~~~t-g~~~g~--afV~f~~~e~a~~ai~~l~~~~~~g 186 (394)
.+-+||-+|++.+..|+ -.++| .+||.|..|.+-+.... ....+. .||+|.+.|+|.+||.+.+|..++|
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyF-GQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYF-GQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhh-hhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 45689999999887766 35788 89999999887654311 112222 4999999999999999999999999
Q ss_pred cceEEeecCCC
Q 016188 187 RPMRISAATPK 197 (394)
Q Consensus 187 ~~l~v~~a~~~ 197 (394)
|.|+..+...+
T Consensus 193 r~lkatYGTTK 203 (480)
T COG5175 193 RVLKATYGTTK 203 (480)
T ss_pred ceEeeecCchH
Confidence 99999887654
No 169
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.32 E-value=0.0009 Score=61.32 Aligned_cols=63 Identities=22% Similarity=0.362 Sum_probs=55.3
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-------------------CcEEEEEeCchHHHHHHHHHhC
Q 016188 230 DITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG-------------------RGCGFVQFAARASAEEAILRMQ 290 (394)
Q Consensus 230 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~-------------------~g~~fV~f~~~~~a~~a~~~l~ 290 (394)
....++|.+.|||.+-.-+.|.++|..+|.|..|+|... +-+|+|+|++.+.|.+|.+.|+
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 346789999999999999999999999999999999753 3589999999999999988875
Q ss_pred Cc
Q 016188 291 GH 292 (394)
Q Consensus 291 g~ 292 (394)
..
T Consensus 308 ~e 309 (484)
T KOG1855|consen 308 PE 309 (484)
T ss_pred hh
Confidence 43
No 170
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.19 E-value=0.0003 Score=64.31 Aligned_cols=78 Identities=21% Similarity=0.202 Sum_probs=62.1
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeec---CCCCC----------CcceEEEEEcCHHHHHHHHHHcCCC
Q 016188 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRN---KITGQ----------PEGYGFVEFVSHAAAERVLQTYNGT 88 (394)
Q Consensus 22 ~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~---~~~g~----------~~g~afV~f~~~e~A~~a~~~l~~~ 88 (394)
++++|.+.|||.+-.-+.|.++|..+|.|..|+|+.- ..+.+ .+-+|+|+|...+.|.+|.+.++..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 6899999999999888999999999999999999876 32221 2567999999999999999988665
Q ss_pred CCCCccceeee
Q 016188 89 PMPGTEQNFRL 99 (394)
Q Consensus 89 ~~~~~~~~v~~ 99 (394)
......+++++
T Consensus 310 ~~wr~glkvkL 320 (484)
T KOG1855|consen 310 QNWRMGLKVKL 320 (484)
T ss_pred hhhhhcchhhh
Confidence 44443344443
No 171
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.11 E-value=0.00099 Score=63.12 Aligned_cols=70 Identities=20% Similarity=0.364 Sum_probs=57.9
Q ss_pred cceEEEcCCCCcC--C----HHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCc
Q 016188 23 VRTLWIGDLQYWF--D----ENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGT 93 (394)
Q Consensus 23 ~~~v~V~nLp~~~--~----e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~ 93 (394)
...|+|.|+|--- . ..-|.++|+++|+++...++.+. .|.++||.|++|.+..+|+.|++.|||..|.-+
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e-~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDE-EGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCc-cCCeeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 3569999999632 2 22366889999999999888887 556899999999999999999999999988654
No 172
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.03 E-value=0.0031 Score=44.44 Aligned_cols=60 Identities=13% Similarity=0.216 Sum_probs=45.1
Q ss_pred CcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCC
Q 016188 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNG 87 (394)
Q Consensus 19 ~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~ 87 (394)
.+......+|. .|.++...||.++|+.||.|. |.++.+ ..|||...+.+.|..++..+..
T Consensus 5 ~P~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 5 QPSRDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp --SGCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred CCCcceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 44555666776 999999999999999999974 777766 4799999999999999988753
No 173
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.02 E-value=0.0017 Score=48.41 Aligned_cols=73 Identities=16% Similarity=0.197 Sum_probs=49.2
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEE-EeecC------CCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCc
Q 016188 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIK-IIRNK------ITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGT 93 (394)
Q Consensus 21 ~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~-i~~~~------~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~ 93 (394)
.+.+-|.|-+.|+. ....|.+.|++||.|++.. +.++. .......+..|.|.++.+|.+||+. ||..+.+.
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~ 81 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGS 81 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTC
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCc
Confidence 34567999999998 5566999999999987774 11100 0112347889999999999999964 99888775
Q ss_pred cc
Q 016188 94 EQ 95 (394)
Q Consensus 94 ~~ 95 (394)
.+
T Consensus 82 ~m 83 (100)
T PF05172_consen 82 LM 83 (100)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 174
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.99 E-value=0.0017 Score=55.58 Aligned_cols=86 Identities=27% Similarity=0.367 Sum_probs=73.2
Q ss_pred HHHHHHHhhCCeeecCcceEEeecCCCCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCCCHHHH
Q 016188 171 ERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEEL 250 (394)
Q Consensus 171 ~a~~ai~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l 250 (394)
-|+.|-+.|++....++.+.|.++.. ..|+|.||...++-+.|
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~-------------------------------------a~l~V~nl~~~~sndll 48 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH-------------------------------------AELYVVNLMQGASNDLL 48 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc-------------------------------------ceEEEEecchhhhhHHH
Confidence 46677778899999999999999854 45899999999999999
Q ss_pred HHHhcccCCeEEEEEeCC-----CcEEEEEeCchHHHHHHHHHhCCce
Q 016188 251 KQTFLHFGEIVNVKIPMG-----RGCGFVQFAARASAEEAILRMQGHM 293 (394)
Q Consensus 251 ~~~F~~~G~i~~~~i~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~ 293 (394)
.+.|+.||.|....+..| .+-++|.|...-.|.+|+..+.-.-
T Consensus 49 ~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g 96 (275)
T KOG0115|consen 49 EQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGG 96 (275)
T ss_pred HHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCc
Confidence 999999999988766554 4688999999999999999885433
No 175
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.96 E-value=0.0044 Score=49.06 Aligned_cols=74 Identities=24% Similarity=0.356 Sum_probs=51.9
Q ss_pred CCCccEEEEcCCC----C--CCCH---HHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCceeCcEEEE
Q 016188 230 DITNTTIFVGNLD----P--NVTE---EELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVR 300 (394)
Q Consensus 230 ~~~~~~l~v~nl~----~--~~t~---~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~ 300 (394)
+++..+|.|.=+. . ...+ ++|.+.|..||.+.-+++.. +..+|+|.+-+.|.+| ..++|.+++|+.|+
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~--~~mwVTF~dg~sALaa-ls~dg~~v~g~~l~ 100 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG--DTMWVTFRDGQSALAA-LSLDGIQVNGRTLK 100 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET--TCEEEEESSCHHHHHH-HHGCCSEETTEEEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC--CeEEEEECccHHHHHH-HccCCcEECCEEEE
Confidence 3445666665444 1 2222 36777899999999888874 6899999999999998 57899999999999
Q ss_pred EEEccc
Q 016188 301 ISWGRK 306 (394)
Q Consensus 301 v~~a~~ 306 (394)
|++..+
T Consensus 101 i~LKtp 106 (146)
T PF08952_consen 101 IRLKTP 106 (146)
T ss_dssp EEE---
T ss_pred EEeCCc
Confidence 998764
No 176
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.94 E-value=0.00038 Score=59.64 Aligned_cols=58 Identities=17% Similarity=0.313 Sum_probs=49.7
Q ss_pred HHHHHHhc-ccCCeEEEEEeCC-----CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcc
Q 016188 248 EELKQTFL-HFGEIVNVKIPMG-----RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (394)
Q Consensus 248 ~~l~~~F~-~~G~i~~~~i~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 305 (394)
++|...|+ +||.|+++.|-.+ +|-++|.|...++|++|+..||+..+.|++|...+.-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 44555555 8999999988765 6899999999999999999999999999999998743
No 177
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.90 E-value=0.00053 Score=58.76 Aligned_cols=66 Identities=17% Similarity=0.308 Sum_probs=54.6
Q ss_pred HHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeecCCC
Q 016188 131 YLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK 197 (394)
Q Consensus 131 ~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a~~~ 197 (394)
+++...|..+||+|+++.|-.+.. -.-+|.++|.|..+|+|++|++.||+..+.|++|...+..-.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 567777745999999987665432 356889999999999999999999999999999998877543
No 178
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.86 E-value=0.00093 Score=63.67 Aligned_cols=80 Identities=11% Similarity=0.136 Sum_probs=68.9
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhc-ccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCcee---CcEEEEEEEc
Q 016188 229 NDITNTTIFVGNLDPNVTEEELKQTFL-HFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMI---GQQQVRISWG 304 (394)
Q Consensus 229 ~~~~~~~l~v~nl~~~~t~~~l~~~F~-~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~~---~g~~l~v~~a 304 (394)
.....+.|+|.||-..+|.-+|+.++. ..|.|.++.|.+=+..|||.|.+.++|...+.+|||..+ +.+.|.+.|+
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~ 519 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFV 519 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeec
Confidence 455678999999999999999999998 567777776665588999999999999999999999875 6789999998
Q ss_pred ccCC
Q 016188 305 RKQD 308 (394)
Q Consensus 305 ~~~~ 308 (394)
....
T Consensus 520 ~~de 523 (718)
T KOG2416|consen 520 RADE 523 (718)
T ss_pred chhH
Confidence 8544
No 179
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.82 E-value=0.0038 Score=53.57 Aligned_cols=88 Identities=19% Similarity=0.335 Sum_probs=73.5
Q ss_pred HHHHHHHcCCCCCCCccceeeeecccCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCC
Q 016188 78 AERVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGR 157 (394)
Q Consensus 78 A~~a~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~ 157 (394)
|..|-..|++....++.+.|+... +..|+|.||+.-++.+.+.+.| +.||+|+..+++.|. .++
T Consensus 7 ae~ak~eLd~~~~~~~~lr~rfa~--------------~a~l~V~nl~~~~sndll~~~f-~~fg~~e~av~~vD~-r~k 70 (275)
T KOG0115|consen 7 AEIAKRELDGRFPKGRSLRVRFAM--------------HAELYVVNLMQGASNDLLEQAF-RRFGPIERAVAKVDD-RGK 70 (275)
T ss_pred HHHHHHhcCCCCCCCCceEEEeec--------------cceEEEEecchhhhhHHHHHhh-hhcCccchheeeecc-ccc
Confidence 455556679999999777666653 2469999999999999999999 899999998888774 488
Q ss_pred CccEEEEEeCCHHHHHHHHHhhCC
Q 016188 158 SKGYGFVKFLDENERNRAMTEMNG 181 (394)
Q Consensus 158 ~~g~afV~f~~~e~a~~ai~~l~~ 181 (394)
..+-++|.|...-.|..|.+.+.-
T Consensus 71 ~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 71 PTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred ccccchhhhhcchhHHHHHHHhcc
Confidence 899999999999999999987743
No 180
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.70 E-value=0.012 Score=39.33 Aligned_cols=53 Identities=19% Similarity=0.268 Sum_probs=44.6
Q ss_pred ceEEEcCCCCcCCHHHHHHHHhhc----CCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHc
Q 016188 24 RTLWIGDLQYWFDENYLSSCFAHT----GEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85 (394)
Q Consensus 24 ~~v~V~nLp~~~~e~~l~~~f~~~----G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l 85 (394)
.+|.|+++. +++.++|+.+|..| ++ ..|.++-|. .|=|.|.+.+.|.+|+..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~-~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGP-FRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCC-ceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 469999984 58888999999999 54 578888885 6889999999999999764
No 181
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.70 E-value=0.0091 Score=56.85 Aligned_cols=77 Identities=18% Similarity=0.280 Sum_probs=61.9
Q ss_pred CCcceEEEcCCCCC--CC----HHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeee-cC
Q 016188 114 GPEHSIFVGDLAPD--VT----DYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFC-ST 186 (394)
Q Consensus 114 ~~~~~l~v~nlp~~--~t----~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~-~g 186 (394)
.....|+|.|+|.- .. ..-|...| +++|++..+.++.+..+ .++|+.|++|.+..+|..|+..+||..+ .+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvf-sk~gk~vn~~~P~~e~g-gtkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVF-SKAGKIVNMYYPIDEEG-GTKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHH-HhhccccceeeccCccC-CeeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 44678899998852 22 34577788 89999999999988774 4999999999999999999999999887 45
Q ss_pred cceEEe
Q 016188 187 RPMRIS 192 (394)
Q Consensus 187 ~~l~v~ 192 (394)
++..|.
T Consensus 134 Htf~v~ 139 (698)
T KOG2314|consen 134 HTFFVR 139 (698)
T ss_pred ceEEee
Confidence 555554
No 182
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.59 E-value=0.018 Score=40.63 Aligned_cols=56 Identities=18% Similarity=0.275 Sum_probs=43.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhC
Q 016188 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQ 290 (394)
Q Consensus 232 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~ 290 (394)
.....+|. .|..+...||.++|++||.|.---|. -..|||...+.+.|..|+..+.
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~--dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIN--DTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCEEEEEEC--TTEEEEEECCCHHHHHHHHHHT
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcEEEEEEc--CCcEEEEeecHHHHHHHHHHhc
Confidence 34566676 99999999999999999999755553 5799999999999999988876
No 183
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.31 E-value=0.019 Score=44.87 Aligned_cols=74 Identities=28% Similarity=0.359 Sum_probs=56.0
Q ss_pred CCCccEEEEcCCCCCC-CHHH---HHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcc
Q 016188 230 DITNTTIFVGNLDPNV-TEEE---LKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (394)
Q Consensus 230 ~~~~~~l~v~nl~~~~-t~~~---l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 305 (394)
+.+-.+|.|+=|..++ ..+| |...++.||+|.+|.+. ++..|.|.|.|..+|-+|+.+++. ..-|..+.++|-.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWqq 160 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQQ 160 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeeccc
Confidence 3445677777555544 3344 44557889999999875 678999999999999999999984 6678888887743
No 184
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.20 E-value=0.021 Score=47.78 Aligned_cols=63 Identities=19% Similarity=0.215 Sum_probs=50.3
Q ss_pred CHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhC--CceeCcEEEEEEEcccCC
Q 016188 246 TEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQ--GHMIGQQQVRISWGRKQD 308 (394)
Q Consensus 246 t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~--g~~~~g~~l~v~~a~~~~ 308 (394)
..+.|+++|..++.+..+..+++-+-..|.|.+.++|.+|...|+ +..+.|..++|.++....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 457899999999999999999998899999999999999999999 999999999999986443
No 185
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.11 E-value=0.017 Score=50.54 Aligned_cols=59 Identities=22% Similarity=0.179 Sum_probs=48.6
Q ss_pred HHHHHHHHhhcCCceEEEEeecCCCCCCc-ceEEEEEcCHHHHHHHHHHcCCCCCCCccc
Q 016188 37 ENYLSSCFAHTGEVVSIKIIRNKITGQPE-GYGFVEFVSHAAAERVLQTYNGTPMPGTEQ 95 (394)
Q Consensus 37 e~~l~~~f~~~G~v~~v~i~~~~~~g~~~-g~afV~f~~~e~A~~a~~~l~~~~~~~~~~ 95 (394)
++++++-+++||.|..|.|...+...... --.||+|+..++|.+|+-.|||..+.|+..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v 359 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVV 359 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceee
Confidence 45678889999999999999887444322 347999999999999999999999999543
No 186
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.10 E-value=0.008 Score=57.58 Aligned_cols=81 Identities=12% Similarity=0.106 Sum_probs=65.8
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeee---cCc
Q 016188 111 PDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFC---STR 187 (394)
Q Consensus 111 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~---~g~ 187 (394)
.....++.|+|.||-...|.-.|++++....|.|++..|-+ -+..|||.|.+.++|...+.+||+..+ +.+
T Consensus 439 sR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk------IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK 512 (718)
T KOG2416|consen 439 SRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK------IKSHCYVSYSSVEEAAATREALHNVQWPPSNPK 512 (718)
T ss_pred CCCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHH------hhcceeEecccHHHHHHHHHHHhccccCCCCCc
Confidence 35567899999999999999999999955778888773322 245899999999999999999999876 777
Q ss_pred ceEEeecCCC
Q 016188 188 PMRISAATPK 197 (394)
Q Consensus 188 ~l~v~~a~~~ 197 (394)
.|.+.|....
T Consensus 513 ~L~adf~~~d 522 (718)
T KOG2416|consen 513 HLIADFVRAD 522 (718)
T ss_pred eeEeeecchh
Confidence 8888776543
No 187
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.95 E-value=0.0067 Score=50.64 Aligned_cols=72 Identities=10% Similarity=0.027 Sum_probs=45.8
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHhh-cCCc---eEEEEeecCCCC--CCcceEEEEEcCHHHHHHHHHHcCCCCCCC
Q 016188 21 EEVRTLWIGDLQYWFDENYLSSCFAH-TGEV---VSIKIIRNKITG--QPEGYGFVEFVSHAAAERVLQTYNGTPMPG 92 (394)
Q Consensus 21 ~~~~~v~V~nLp~~~~e~~l~~~f~~-~G~v---~~v~i~~~~~~g--~~~g~afV~f~~~e~A~~a~~~l~~~~~~~ 92 (394)
.+...|.||+||+.+||+++.+.+.. ++.. ..+.-......- ....-|||.|.+.+++......++|..+..
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 45568999999999999999997776 5554 223222222221 123459999999999999999999977643
No 188
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.77 E-value=0.023 Score=45.09 Aligned_cols=55 Identities=27% Similarity=0.401 Sum_probs=44.1
Q ss_pred HHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeeeecc
Q 016188 39 YLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWA 102 (394)
Q Consensus 39 ~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~~~~ 102 (394)
+|.+.|..||.+.-|++..+. -+|+|.+-++|.+|+ .++|..+.++.+++++...
T Consensus 52 ~ll~~~~~~GevvLvRfv~~~--------mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGDT--------MWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETTC--------EEEEESSCHHHHHHH-HGCCSEETTEEEEEEE---
T ss_pred HHHHHHHhCCceEEEEEeCCe--------EEEEECccHHHHHHH-ccCCcEECCEEEEEEeCCc
Confidence 577889999998888887764 899999999999999 5799999997777776533
No 189
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.70 E-value=0.0074 Score=56.27 Aligned_cols=74 Identities=23% Similarity=0.420 Sum_probs=62.4
Q ss_pred ccEEEEcCCCCCC-CHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccC
Q 016188 233 NTTIFVGNLDPNV-TEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307 (394)
Q Consensus 233 ~~~l~v~nl~~~~-t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 307 (394)
.+.|-+.-+++.. +..+|..+|.+||.|..|.+..+.--|.|+|.+..+|-+| ...++..|+++.|+|.|-.+-
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a-~~s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEA-YASHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCchhhheeeeeccccccch-hccccceecCceeEEEEecCC
Confidence 3455566666644 7899999999999999999987778899999999999887 567889999999999998763
No 190
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.58 E-value=0.23 Score=37.77 Aligned_cols=71 Identities=18% Similarity=0.262 Sum_probs=51.7
Q ss_pred cCCcceEEEcCCCCcCCHHHHHHHHhhcCC-ceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCC
Q 016188 20 LEEVRTLWIGDLQYWFDENYLSSCFAHTGE-VVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPG 92 (394)
Q Consensus 20 ~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~-v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~ 92 (394)
.+....+.+...|..++-++|..+...+-. |..++|+++.. .++-.+++.|.+.++|....+.+||+.++.
T Consensus 10 ~~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 10 ERRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CCCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 334444555555555666677766666543 77888988752 245678999999999999999999998875
No 191
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.57 E-value=0.11 Score=34.89 Aligned_cols=55 Identities=18% Similarity=0.293 Sum_probs=43.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhhC---CCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhh
Q 016188 116 EHSIFVGDLAPDVTDYLLQETFRSQY---PSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEM 179 (394)
Q Consensus 116 ~~~l~v~nlp~~~t~~~l~~~f~~~~---G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l 179 (394)
...|+|+|+. +.+.++|+.+| ..| .....|..+.|. -|=|.|.+.+.|.+|+.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~-~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYF-SEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHH-HHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 3579999984 57888999999 677 235577777774 4889999999999999754
No 192
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.56 E-value=0.041 Score=52.46 Aligned_cols=70 Identities=9% Similarity=0.182 Sum_probs=57.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhcc--cCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCc--eeCcEEEEEEE
Q 016188 233 NTTIFVGNLDPNVTEEELKQTFLH--FGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGH--MIGQQQVRISW 303 (394)
Q Consensus 233 ~~~l~v~nl~~~~t~~~l~~~F~~--~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~--~~~g~~l~v~~ 303 (394)
.|.|.|+.||+.+..|+|+.+|+. +-++++|.+-.+ .-.||+|.+..||+.|.+.|... +|.|+.|...+
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N-~nWyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN-DNWYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec-CceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 478889999999999999999964 788999988654 45799999999999999888643 47787765443
No 193
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.19 E-value=0.097 Score=46.22 Aligned_cols=73 Identities=18% Similarity=0.271 Sum_probs=58.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCceeCcE-EEEEEEcccC
Q 016188 233 NTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQ-QVRISWGRKQ 307 (394)
Q Consensus 233 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~-~l~v~~a~~~ 307 (394)
...|-|.++++.- ...|..+|++||.|.+........+..|.|.+.-+|++||. -||+.|+|. .|-|+-+..+
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCCH
Confidence 5678888888854 45678899999999998888667899999999999999965 589999876 4566665443
No 194
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.87 E-value=0.073 Score=50.86 Aligned_cols=61 Identities=11% Similarity=0.148 Sum_probs=51.1
Q ss_pred CcCCcceEEEcCCCCcCCHHHHHHHHhh--cCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcC
Q 016188 19 TLEEVRTLWIGDLQYWFDENYLSSCFAH--TGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYN 86 (394)
Q Consensus 19 ~~~~~~~v~V~nLp~~~~e~~l~~~f~~--~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~ 86 (394)
.....|.|.|+.||..+..|+|+.+|.. +-++.+|.+-.+. + =||+|+++.||+.|.+.|.
T Consensus 171 p~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------n-WyITfesd~DAQqAykylr 233 (684)
T KOG2591|consen 171 PNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------N-WYITFESDTDAQQAYKYLR 233 (684)
T ss_pred cCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------c-eEEEeecchhHHHHHHHHH
Confidence 3456678999999999999999999964 5678899988764 2 4899999999999998764
No 195
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.78 E-value=0.17 Score=39.73 Aligned_cols=77 Identities=16% Similarity=0.180 Sum_probs=56.5
Q ss_pred CCCCCcceEEEcCCCCCC----CHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecC
Q 016188 111 PDAGPEHSIFVGDLAPDV----TDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCST 186 (394)
Q Consensus 111 ~~~~~~~~l~v~nlp~~~----t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g 186 (394)
....+-.+|.|+=|..++ +-..+...+ +.||+|.+|.+. |+ --|.|.|++..+|-.|+.+++. ...|
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~L-s~fGpI~SVT~c-----Gr--qsavVvF~d~~SAC~Av~Af~s-~~pg 151 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRL-SVFGPIQSVTLC-----GR--QSAVVVFKDITSACKAVSAFQS-RAPG 151 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHH-HhcCCcceeeec-----CC--ceEEEEehhhHHHHHHHHhhcC-CCCC
Confidence 345667788886555544 445566677 899999998765 32 2599999999999999998876 5567
Q ss_pred cceEEeecCC
Q 016188 187 RPMRISAATP 196 (394)
Q Consensus 187 ~~l~v~~a~~ 196 (394)
..+..+|-..
T Consensus 152 tm~qCsWqqr 161 (166)
T PF15023_consen 152 TMFQCSWQQR 161 (166)
T ss_pred ceEEeecccc
Confidence 7777776543
No 196
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.17 E-value=0.057 Score=54.14 Aligned_cols=72 Identities=19% Similarity=0.227 Sum_probs=62.6
Q ss_pred EEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCce--eCcEEEEEEEcccCC
Q 016188 237 FVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHM--IGQQQVRISWGRKQD 308 (394)
Q Consensus 237 ~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~--~~g~~l~v~~a~~~~ 308 (394)
.+.|.+-..+...|..+|+.||.|.+++..++-..|.|+|.+.+.|..|+.+|+|++ .-|-+.+|.+|+.-+
T Consensus 302 ~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hhhcccccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 344555566778899999999999999999999999999999999999999999998 457789999998654
No 197
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.10 E-value=0.2 Score=46.84 Aligned_cols=70 Identities=17% Similarity=0.270 Sum_probs=59.8
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHhhcCC-ceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCC
Q 016188 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGE-VVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPG 92 (394)
Q Consensus 21 ~~~~~v~V~nLp~~~~e~~l~~~f~~~G~-v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~ 92 (394)
.+++.|.|-.+|..++--||..++..+-. |.+|+|+++... ++-.++|.|.+.++|....+.+||+.+..
T Consensus 72 ~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 72 SSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 33788999999999999999999977654 999999996522 34568899999999999999999998875
No 198
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.02 E-value=0.077 Score=44.29 Aligned_cols=69 Identities=12% Similarity=0.151 Sum_probs=44.5
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhh-CCCe---eEEEEeeC-CCCC-CCccEEEEEeCCHHHHHHHHHhhCCeee
Q 016188 115 PEHSIFVGDLAPDVTDYLLQETFRSQ-YPSV---RGAKVVTD-PNTG-RSKGYGFVKFLDENERNRAMTEMNGVFC 184 (394)
Q Consensus 115 ~~~~l~v~nlp~~~t~~~l~~~f~~~-~G~v---~~v~i~~~-~~tg-~~~g~afV~f~~~e~a~~ai~~l~~~~~ 184 (394)
...+|.|++||+.+|++++.+.+ +. ++.- ..+.-... .... ..-..|||.|.+.+++......++|+.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i-~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F 80 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQI-SPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVF 80 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCC-SS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEE
T ss_pred cCceEEEeCCCCCCCHHHHHHHh-hhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEE
Confidence 45689999999999999998876 44 5544 23321122 1111 1233599999999999999999999876
No 199
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=93.87 E-value=0.41 Score=33.57 Aligned_cols=59 Identities=19% Similarity=0.309 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHhcccC-----CeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEc
Q 016188 243 PNVTEEELKQTFLHFG-----EIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWG 304 (394)
Q Consensus 243 ~~~t~~~l~~~F~~~G-----~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 304 (394)
..++..+|..++...+ .|-+|+|. ..|+||+-.. +.|..++..|++..+.|++|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~--~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF--DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE---SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe--eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3677888888887664 45566776 5689998874 5788999999999999999999875
No 200
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.80 E-value=0.021 Score=51.21 Aligned_cols=74 Identities=15% Similarity=0.332 Sum_probs=59.8
Q ss_pred cEEEEcCCCCCCCHHHH-H--HHhcccCCeEEEEEeCCC---------cEEEEEeCchHHHHHHHHHhCCceeCcEEEEE
Q 016188 234 TTIFVGNLDPNVTEEEL-K--QTFLHFGEIVNVKIPMGR---------GCGFVQFAARASAEEAILRMQGHMIGQQQVRI 301 (394)
Q Consensus 234 ~~l~v~nl~~~~t~~~l-~--~~F~~~G~i~~~~i~~~~---------g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v 301 (394)
..+||-+|+..+.++.+ + +.|.+||.|.+|.+.++. .-++|+|...++|..||...+|..++|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 55788888887654444 3 468999999999987742 35899999999999999999999999999888
Q ss_pred EEcccC
Q 016188 302 SWGRKQ 307 (394)
Q Consensus 302 ~~a~~~ 307 (394)
+++..+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 877633
No 201
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.72 E-value=0.88 Score=34.62 Aligned_cols=67 Identities=12% Similarity=0.156 Sum_probs=47.7
Q ss_pred cceEEEcCCC-CCCCHHHHHHHHHhhC-CCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeec
Q 016188 116 EHSIFVGDLA-PDVTDYLLQETFRSQY-PSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCS 185 (394)
Q Consensus 116 ~~~l~v~nlp-~~~t~~~l~~~f~~~~-G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~ 185 (394)
...+.+--+| .-++.++|..+. +.+ ..|..++|+++.. .++=.+.+.|.+.++|.......||+.+.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~-~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFG-APFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhh-hcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3444444444 455556776666 444 4477888888743 36667999999999999999999998773
No 202
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=92.87 E-value=0.27 Score=35.62 Aligned_cols=70 Identities=17% Similarity=0.274 Sum_probs=45.5
Q ss_pred EEEEeCCHHHHHHHHHhhCCe--eecCcceEEeec--CCCCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEE
Q 016188 162 GFVKFLDENERNRAMTEMNGV--FCSTRPMRISAA--TPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIF 237 (394)
Q Consensus 162 afV~f~~~e~a~~ai~~l~~~--~~~g~~l~v~~a--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 237 (394)
|.|+|.+.+-|++.++. ..+ .+++..+.|... ........ .-......++|.
T Consensus 1 AlITF~e~~VA~~i~~~-~~~~v~l~~~~~~V~v~P~~~~~~~k~-----------------------qv~~~vs~rtVl 56 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKK-KKHPVPLEDCCVRVKVSPVTLGHLQKF-----------------------QVFSGVSKRTVL 56 (88)
T ss_pred CEEEeCcHHHHHHHHhC-CEEEEEECCEEEEEEEEeEecCCceEE-----------------------EEEEcccCCEEE
Confidence 67999999999999953 333 346666655433 22111111 112233458899
Q ss_pred EcCCCCCCCHHHHHHHhc
Q 016188 238 VGNLDPNVTEEELKQTFL 255 (394)
Q Consensus 238 v~nl~~~~t~~~l~~~F~ 255 (394)
|.|||...++++|++..+
T Consensus 57 vsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 57 VSGIPDVLDEEELRDKLE 74 (88)
T ss_pred EeCCCCCCChhhheeeEE
Confidence 999999999999998644
No 203
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=92.76 E-value=0.071 Score=47.97 Aligned_cols=70 Identities=14% Similarity=0.275 Sum_probs=54.2
Q ss_pred ceEEEcCCCCcCCHHH-HH--HHHhhcCCceEEEEeecCC----CCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCcc
Q 016188 24 RTLWIGDLQYWFDENY-LS--SCFAHTGEVVSIKIIRNKI----TGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTE 94 (394)
Q Consensus 24 ~~v~V~nLp~~~~e~~-l~--~~f~~~G~v~~v~i~~~~~----~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~ 94 (394)
.-+||-+|+.....++ |+ ++|.+||.|..|.+.++.. .+- .-.+||+|...|+|..||...+|..+.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~-~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGG-TCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCC-CCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 4588889998765444 43 7899999999998887652 111 122899999999999999999998888855
No 204
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=91.69 E-value=1 Score=30.71 Aligned_cols=55 Identities=18% Similarity=0.244 Sum_probs=44.5
Q ss_pred CCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEE
Q 016188 244 NVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRI 301 (394)
Q Consensus 244 ~~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v 301 (394)
.++.++++..+..|+-. +|..++.--||.|.+..+|+++....+|+.+.+.+|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDRTGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecCCEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 46789999999999533 33455666689999999999999999999988877654
No 205
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.14 E-value=1.3 Score=41.74 Aligned_cols=68 Identities=16% Similarity=0.169 Sum_probs=58.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeec
Q 016188 116 EHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCS 185 (394)
Q Consensus 116 ~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~ 185 (394)
++.|+|-.+|..++.-||..|.....-.|.++++++|.. -++=.+.|.|.+.++|......+||..|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 888999999999999999999965556699999999754 24556899999999999999999998763
No 206
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=90.61 E-value=0.18 Score=50.76 Aligned_cols=73 Identities=19% Similarity=0.209 Sum_probs=60.6
Q ss_pred eEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeeeeccc
Q 016188 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWAS 103 (394)
Q Consensus 25 ~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~~~~~ 103 (394)
+..+.|.+-..+-.-|..+|.+||.|.++|..++. ..|.|+|.+.+.|..|+..|+|+.+.-.....+|..++
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 34445555566777899999999999999998886 67999999999999999999999987666777776665
No 207
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.18 E-value=1.3 Score=39.40 Aligned_cols=62 Identities=19% Similarity=0.210 Sum_probs=47.9
Q ss_pred ceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCc
Q 016188 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGT 93 (394)
Q Consensus 24 ~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~ 93 (394)
.=|-|-++|+.-. ..|...|++||.|++.... ....+-+|.|.+.-+|.+||.+ +|+.|.+.
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALsk-ng~ii~g~ 259 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSK-NGTIIDGD 259 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhh-cCeeeccc
Confidence 3477778887543 4588999999998766443 2347899999999999999975 88888774
No 208
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.89 E-value=1.6 Score=42.40 Aligned_cols=75 Identities=21% Similarity=0.217 Sum_probs=61.0
Q ss_pred CCCCccEEEEcCCCC-CCCHHHHHHHhccc----CCeEEEEEeCC-----------------------------------
Q 016188 229 NDITNTTIFVGNLDP-NVTEEELKQTFLHF----GEIVNVKIPMG----------------------------------- 268 (394)
Q Consensus 229 ~~~~~~~l~v~nl~~-~~t~~~l~~~F~~~----G~i~~~~i~~~----------------------------------- 268 (394)
....+++|-|-||.+ .+...||.-+|+.| |.|.+|.|.++
T Consensus 170 ~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee 249 (650)
T KOG2318|consen 170 LGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEE 249 (650)
T ss_pred cccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhh
Confidence 356678999999998 67899999999877 68999998541
Q ss_pred ---------C---------cEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEE
Q 016188 269 ---------R---------GCGFVQFAARASAEEAILRMQGHMIGQQQVRISW 303 (394)
Q Consensus 269 ---------~---------g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 303 (394)
| =||.|+|.+++.|......+.|.++...-..+.+
T Consensus 250 ~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DL 302 (650)
T KOG2318|consen 250 EEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDL 302 (650)
T ss_pred hhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeee
Confidence 0 2799999999999999999999998765444443
No 209
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.66 E-value=1.7 Score=42.17 Aligned_cols=81 Identities=22% Similarity=0.301 Sum_probs=63.7
Q ss_pred CcCCcceEEEcCCCCc-CCHHHHHHHHhhc----CCceEEEEeecCC----------CCC--------------------
Q 016188 19 TLEEVRTLWIGDLQYW-FDENYLSSCFAHT----GEVVSIKIIRNKI----------TGQ-------------------- 63 (394)
Q Consensus 19 ~~~~~~~v~V~nLp~~-~~e~~l~~~f~~~----G~v~~v~i~~~~~----------~g~-------------------- 63 (394)
-...+++|-|.|+.|+ +.-+||..+|+.| |.|.+|.|..+.. +|.
T Consensus 170 ~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee 249 (650)
T KOG2318|consen 170 LGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEE 249 (650)
T ss_pred cccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhh
Confidence 3667899999999997 7899999998877 5799999976541 121
Q ss_pred -----------------CcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeee
Q 016188 64 -----------------PEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRL 99 (394)
Q Consensus 64 -----------------~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~ 99 (394)
.--||.|+|.+.+.|..+.+.|+|..+......+-+
T Consensus 250 ~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DL 302 (650)
T KOG2318|consen 250 EEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDL 302 (650)
T ss_pred hhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeee
Confidence 124688999999999999999999999775544444
No 210
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=89.51 E-value=0.23 Score=46.69 Aligned_cols=72 Identities=17% Similarity=0.175 Sum_probs=57.2
Q ss_pred EEEcCCCCCC-CHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeecCCC
Q 016188 119 IFVGDLAPDV-TDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK 197 (394)
Q Consensus 119 l~v~nlp~~~-t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a~~~ 197 (394)
|-+.-.|+.. +-++|..+| .+||+|..|.+-.. .-.|.|+|.+..+|-.|. ..++..|++|.|+|.|.++.
T Consensus 375 l~lek~~~glnt~a~ln~hf-A~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 375 LALEKSPFGLNTIADLNPHF-AQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred hhhhccCCCCchHhhhhhhh-hhcCccccccccCc------hhhheeeeeccccccchh-ccccceecCceeEEEEecCC
Confidence 3344445544 458999999 89999999877544 236999999999998888 67899999999999999875
Q ss_pred C
Q 016188 198 K 198 (394)
Q Consensus 198 ~ 198 (394)
.
T Consensus 447 ~ 447 (526)
T KOG2135|consen 447 P 447 (526)
T ss_pred c
Confidence 4
No 211
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=89.31 E-value=0.76 Score=38.56 Aligned_cols=58 Identities=21% Similarity=0.186 Sum_probs=43.6
Q ss_pred CHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcC--CCCCCCccceeee
Q 016188 36 DENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYN--GTPMPGTEQNFRL 99 (394)
Q Consensus 36 ~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~--~~~~~~~~~~v~~ 99 (394)
..+.|+++|..++.+..+.+.++- +-..|.|.+.++|.+|...|+ +..+.+..+++..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf 67 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYF 67 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE-
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEE
Confidence 457899999999998888777765 568999999999999999999 7888885544433
No 212
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=89.07 E-value=0.83 Score=33.10 Aligned_cols=70 Identities=13% Similarity=0.260 Sum_probs=45.5
Q ss_pred EEEEEcCHHHHHHHHHHcCC-CCCCCccceeeeecccCCCCCC--CCCCCCcceEEEcCCCCCCCHHHHHHHH
Q 016188 68 GFVEFVSHAAAERVLQTYNG-TPMPGTEQNFRLNWASFGIGEK--RPDAGPEHSIFVGDLAPDVTDYLLQETF 137 (394)
Q Consensus 68 afV~f~~~e~A~~a~~~l~~-~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~l~v~nlp~~~t~~~l~~~f 137 (394)
|+|+|.+++-|.+.++.-.. ..+....+.+.++.-......+ -....+.++|.|.|||...++++|++.+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 68999999999999964221 2334444445444332211111 1123457889999999999999998877
No 213
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=88.21 E-value=0.66 Score=45.66 Aligned_cols=73 Identities=22% Similarity=0.383 Sum_probs=61.0
Q ss_pred CcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceee
Q 016188 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (394)
Q Consensus 19 ~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~ 98 (394)
--.+..+|||+||...+..+-++.++..+|.|-+++... |+|..|.....+.+|+..++...+.+..+...
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 345667899999999999999999999999887765433 89999999999999999888888877666666
Q ss_pred ee
Q 016188 99 LN 100 (394)
Q Consensus 99 ~~ 100 (394)
+.
T Consensus 107 ~d 108 (668)
T KOG2253|consen 107 VD 108 (668)
T ss_pred ch
Confidence 53
No 214
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=87.63 E-value=0.42 Score=46.96 Aligned_cols=71 Identities=23% Similarity=0.214 Sum_probs=62.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEc
Q 016188 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWG 304 (394)
Q Consensus 231 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 304 (394)
.+..++||+|+...+..+-++.+...+|.|.++.... |+|..|..+..+.+|+..++-..++|..+.+...
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 3457899999999999999999999999999887764 9999999999999999999988899988766543
No 215
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=86.96 E-value=2 Score=29.30 Aligned_cols=51 Identities=16% Similarity=0.203 Sum_probs=39.9
Q ss_pred cCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCc
Q 016188 34 WFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGT 93 (394)
Q Consensus 34 ~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~ 93 (394)
.++-++|+..+..|+- .+|..++ .|| ||.|.+.++|++|....++..+...
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y 61 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTY 61 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecC-----CEE-EEEECChHHHHHHHHhcCCCEEEEE
Confidence 4688899999999964 3444544 244 8999999999999999998877653
No 216
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=86.36 E-value=24 Score=31.61 Aligned_cols=160 Identities=13% Similarity=0.189 Sum_probs=97.4
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCC-------CCCCcceEEEEEcCHHHHHHHHH----HcC--CC
Q 016188 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKI-------TGQPEGYGFVEFVSHAAAERVLQ----TYN--GT 88 (394)
Q Consensus 22 ~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~-------~g~~~g~afV~f~~~e~A~~a~~----~l~--~~ 88 (394)
..|.|.+.|+..+++--++...|-+||+|++|.++.+.. +-+..-...+.|-+.+.+-.... .|. .+
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 457799999999999888999999999999999998761 11234567899999998876653 222 12
Q ss_pred CCCCccceeeeecccCCCCCC-------------------CCCCCCcceEEEcCCCCCCCHHHHHHHHH--hhCCC----
Q 016188 89 PMPGTEQNFRLNWASFGIGEK-------------------RPDAGPEHSIFVGDLAPDVTDYLLQETFR--SQYPS---- 143 (394)
Q Consensus 89 ~~~~~~~~v~~~~~~~~~~~~-------------------~~~~~~~~~l~v~nlp~~~t~~~l~~~f~--~~~G~---- 143 (394)
.+....+++....-.+..... -......|.|.|.--.+-..++.+...+. ..-+.
T Consensus 94 ~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~~~~~~~dl~~~kL~fL~~~~n~RYV 173 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFKDPVDKDDLIEKKLPFLKNSNNKRYV 173 (309)
T ss_pred hcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEecCccchhHHHHHhhhhhccCCCceEE
Confidence 344444444332211111110 01124466677754433223333333330 22222
Q ss_pred eeEEEEeeCCCC--CCCccEEEEEeCCHHHHHHHHHhhCC
Q 016188 144 VRGAKVVTDPNT--GRSKGYGFVKFLDENERNRAMTEMNG 181 (394)
Q Consensus 144 v~~v~i~~~~~t--g~~~g~afV~f~~~e~a~~ai~~l~~ 181 (394)
++.|.++..... .-++.||.++|-+..-|...+.-+..
T Consensus 174 lEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~ 213 (309)
T PF10567_consen 174 LESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKS 213 (309)
T ss_pred EEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHh
Confidence 667777754322 23577999999999999888876653
No 217
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=85.45 E-value=3.9 Score=36.10 Aligned_cols=46 Identities=17% Similarity=0.085 Sum_probs=35.3
Q ss_pred ceEEEcCCCCcCCHHHHHHHHhhcCC-ceEEEEeecCCCCCCcceEEEEEcCH
Q 016188 24 RTLWIGDLQYWFDENYLSSCFAHTGE-VVSIKIIRNKITGQPEGYGFVEFVSH 75 (394)
Q Consensus 24 ~~v~V~nLp~~~~e~~l~~~f~~~G~-v~~v~i~~~~~~g~~~g~afV~f~~~ 75 (394)
.-|+|+|||.++.-.||+..+.+-+. ..++.+.- +.+-||+.|.+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg------~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG------HFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeeec------CCcceeEecCCc
Confidence 34999999999999999999988775 23444333 357799999654
No 218
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=84.58 E-value=0.85 Score=37.43 Aligned_cols=75 Identities=11% Similarity=0.225 Sum_probs=56.1
Q ss_pred cEEEEcCCCCCC-CH----HHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCceeCcE-EEEEEEcccC
Q 016188 234 TTIFVGNLDPNV-TE----EELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQ-QVRISWGRKQ 307 (394)
Q Consensus 234 ~~l~v~nl~~~~-t~----~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~-~l~v~~a~~~ 307 (394)
..+.+.+|+..+ +. .....+|.+|-+..-..++++.+..-|.|.+++.|..|...++...|.|+ .++.-++.+.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPG 90 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCC
Confidence 456677777644 22 23345566666666666777777888999999999999999999999998 8888888765
Q ss_pred C
Q 016188 308 D 308 (394)
Q Consensus 308 ~ 308 (394)
.
T Consensus 91 ~ 91 (193)
T KOG4019|consen 91 H 91 (193)
T ss_pred C
Confidence 4
No 219
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=83.41 E-value=5.3 Score=27.88 Aligned_cols=60 Identities=13% Similarity=0.272 Sum_probs=34.8
Q ss_pred CCCCCHHHHHHHHHhhCCC-----eeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeec
Q 016188 125 APDVTDYLLQETFRSQYPS-----VRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (394)
Q Consensus 125 p~~~t~~~l~~~f~~~~G~-----v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a 194 (394)
-..++..+|..++ ..-+. |-.+.+..+ |.||+.... .|..+++.|++..+.|+.+.|+.|
T Consensus 10 ~dg~~~~~iv~~i-~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 10 KDGLTPRDIVGAI-CNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GGT--HHHHHHHH-HTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred ccCCCHHHHHHHH-HhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3467788899999 44433 445666543 899988765 788899999999999999999764
No 220
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.24 E-value=2.6 Score=39.05 Aligned_cols=55 Identities=22% Similarity=0.154 Sum_probs=46.4
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHhhcCC-ceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHH
Q 016188 22 EVRTLWIGDLQYWFDENYLSSCFAHTGE-VVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQ 83 (394)
Q Consensus 22 ~~~~v~V~nLp~~~~e~~l~~~f~~~G~-v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~ 83 (394)
=.+.|-|.++|.....+||..+|+.|+. -.+|+|+-+ ..||..|.+...|..||-
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALT 445 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhh
Confidence 3468999999999999999999999976 455666665 479999999999999994
No 221
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=77.83 E-value=4.4 Score=36.10 Aligned_cols=74 Identities=12% Similarity=0.301 Sum_probs=58.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCC-------------cEEEEEeCchHHHHH----HHHHhCCc--
Q 016188 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGR-------------GCGFVQFAARASAEE----AILRMQGH-- 292 (394)
Q Consensus 232 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~-------------g~~fV~f~~~~~a~~----a~~~l~g~-- 292 (394)
.++.|...|+..+++-..+...|.+||+|++|.++.+. ....+.|-+.+.+.. .++.|...
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 45778899999999999999999999999999998764 678899999887654 23344322
Q ss_pred eeCcEEEEEEEcc
Q 016188 293 MIGQQQVRISWGR 305 (394)
Q Consensus 293 ~~~g~~l~v~~a~ 305 (394)
.+....|+|++..
T Consensus 94 ~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 94 KLKSESLTLSFVS 106 (309)
T ss_pred hcCCcceeEEEEE
Confidence 3777888887765
No 222
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=77.20 E-value=15 Score=37.43 Aligned_cols=61 Identities=10% Similarity=0.138 Sum_probs=46.4
Q ss_pred CCCCHHHHHHHhcccCCeEE-----EEEeCCCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEccc
Q 016188 243 PNVTEEELKQTFLHFGEIVN-----VKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRK 306 (394)
Q Consensus 243 ~~~t~~~l~~~F~~~G~i~~-----~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 306 (394)
..++..+|-.+...-+.|.. |+|. ..|.||+... +.|...+..|++..+.|+.|.|+.++.
T Consensus 497 ~~~~~~~~~~~i~~~~~~~~~~ig~i~i~--~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (629)
T PRK11634 497 DGVEVRHIVGAIANEGDISSRYIGNIKLF--ASHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLGD 562 (629)
T ss_pred cCCCHHHHHHHHHhhcCCChhhCCcEEEe--CCceEEEcCh-hhHHHHHHHhccccccCCceEEEECCC
Confidence 36677777777766655543 4555 5689999874 567888999999999999999998753
No 223
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=76.24 E-value=3.1 Score=33.60 Aligned_cols=112 Identities=14% Similarity=0.085 Sum_probs=72.5
Q ss_pred CCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeecCCCCCccccccc
Q 016188 127 DVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQQY 206 (394)
Q Consensus 127 ~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~ 206 (394)
..+-..|.+.+....+....+.+..- ..++..+.|.+.+++.+++. .....+.+..+.+..-.+......
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~---- 97 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSE---- 97 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccc----
Confidence 45667777777555554434444432 24689999999999998884 344456777776665543221110
Q ss_pred ccccccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCC-CCHHHHHHHhcccCCeEEEEEeCC
Q 016188 207 AAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPN-VTEEELKQTFLHFGEIVNVKIPMG 268 (394)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~-~t~~~l~~~F~~~G~i~~~~i~~~ 268 (394)
........-|.|.|||.. .+++-|+.+.+..|.+.+++....
T Consensus 98 --------------------~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 98 --------------------VKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred --------------------cceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 001112245678899986 588889999999999999987643
No 224
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=62.06 E-value=12 Score=28.85 Aligned_cols=48 Identities=19% Similarity=0.165 Sum_probs=28.0
Q ss_pred eEEEcCCCCcC---------CHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCH
Q 016188 25 TLWIGDLQYWF---------DENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSH 75 (394)
Q Consensus 25 ~v~V~nLp~~~---------~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~ 75 (394)
++.|-|+|.+. +-++|++.|..|.++ .++.+.+. .-+.+++.|+|.+-
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~-kv~~l~~~--~gh~g~aiv~F~~~ 66 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPL-KVKPLYGK--QGHTGFAIVEFNKD 66 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---S-EEEEEEET--TEEEEEEEEE--SS
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCc-eeEECcCC--CCCcEEEEEEECCC
Confidence 45677776543 557899999999886 57777775 35679999999654
No 225
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=61.81 E-value=4.5 Score=35.53 Aligned_cols=63 Identities=32% Similarity=0.594 Sum_probs=42.2
Q ss_pred CCHHHHHHHhcccCCeEEEEEeC-C---------------CcEE---------EEEeCchHHHHHHHHHhCCce----eC
Q 016188 245 VTEEELKQTFLHFGEIVNVKIPM-G---------------RGCG---------FVQFAARASAEEAILRMQGHM----IG 295 (394)
Q Consensus 245 ~t~~~l~~~F~~~G~i~~~~i~~-~---------------~g~~---------fV~f~~~~~a~~a~~~l~g~~----~~ 295 (394)
.+++.|+..|+.||.|..|.|+. | +||+ ||+|-.-..-..|+.+|.|.. ++
T Consensus 173 pse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgfa~amdalr~~k~akk~d 252 (445)
T KOG2891|consen 173 PSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGMKLAKKGD 252 (445)
T ss_pred ChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHHHHHhHHHHHHHHhcchHHhhcC
Confidence 46889999999999999999863 1 2343 455555555566777777664 33
Q ss_pred cE----EEEEEEcccC
Q 016188 296 QQ----QVRISWGRKQ 307 (394)
Q Consensus 296 g~----~l~v~~a~~~ 307 (394)
|. .++|.+.+++
T Consensus 253 ~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 253 DGFFQANVKVDFDRSR 268 (445)
T ss_pred Ccccccccccccchhh
Confidence 33 5677766644
No 226
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=59.26 E-value=7.4 Score=32.12 Aligned_cols=65 Identities=14% Similarity=0.176 Sum_probs=48.2
Q ss_pred ceEEEcCCCCcC-C----HHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCcc
Q 016188 24 RTLWIGDLQYWF-D----ENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTE 94 (394)
Q Consensus 24 ~~v~V~nLp~~~-~----e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~ 94 (394)
.++.+.+|+..+ + ......+|.+|.+..-..+++.. +..-|.|.+++.|..|...++...+.+..
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf------rrvRi~f~~p~~a~~a~i~~~~~~f~~~~ 80 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF------RRVRINFSNPEAAADARIKLHSTSFNGKN 80 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh------ceeEEeccChhHHHHHHHHhhhcccCCCc
Confidence 347888888764 2 22345677777765555555543 67889999999999999999999998863
No 227
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=57.29 E-value=34 Score=30.40 Aligned_cols=48 Identities=21% Similarity=0.264 Sum_probs=37.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhcccCCe-EEEEEeCCCcEEEEEeCchH
Q 016188 233 NTTIFVGNLDPNVTEEELKQTFLHFGEI-VNVKIPMGRGCGFVQFAARA 280 (394)
Q Consensus 233 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i-~~~~i~~~~g~~fV~f~~~~ 280 (394)
..-|+|+||+.++...||+..+.+-+.+ .++.-.-.++-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCcc
Confidence 4569999999999999999998877654 33333334789999998754
No 228
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=55.53 E-value=25 Score=23.48 Aligned_cols=20 Identities=30% Similarity=0.527 Sum_probs=16.8
Q ss_pred HHHHHHHhcccCCeEEEEEe
Q 016188 247 EEELKQTFLHFGEIVNVKIP 266 (394)
Q Consensus 247 ~~~l~~~F~~~G~i~~~~i~ 266 (394)
..+|+++|+..|.|.-+.+-
T Consensus 8 ~~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHHhcCcEEEEEEc
Confidence 36899999999999877664
No 229
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=54.17 E-value=76 Score=29.86 Aligned_cols=43 Identities=19% Similarity=0.290 Sum_probs=33.8
Q ss_pred CCCcCCcceEEEcCCCCc-CCHHHHHHHHhhc----CCceEEEEeecC
Q 016188 17 PMTLEEVRTLWIGDLQYW-FDENYLSSCFAHT----GEVVSIKIIRNK 59 (394)
Q Consensus 17 ~~~~~~~~~v~V~nLp~~-~~e~~l~~~f~~~----G~v~~v~i~~~~ 59 (394)
+.+..++.+|-|-||.|+ +.-.+|..+|+.| |.|..|.|..+.
T Consensus 140 pe~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypse 187 (622)
T COG5638 140 PEEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSE 187 (622)
T ss_pred cCCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhh
Confidence 344667788999999997 7888898888776 568888888764
No 230
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=53.36 E-value=62 Score=30.43 Aligned_cols=77 Identities=18% Similarity=0.246 Sum_probs=58.5
Q ss_pred CCCCCCccEEEEcCCCC-CCCHHHHHHHhccc----CCeEEEEEeCC---------------------------------
Q 016188 227 ADNDITNTTIFVGNLDP-NVTEEELKQTFLHF----GEIVNVKIPMG--------------------------------- 268 (394)
Q Consensus 227 ~~~~~~~~~l~v~nl~~-~~t~~~l~~~F~~~----G~i~~~~i~~~--------------------------------- 268 (394)
++.+...+.|-|-||.+ .+...+|...|+.| |+|..|.|.++
T Consensus 140 pe~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~ 219 (622)
T COG5638 140 PEEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFG 219 (622)
T ss_pred cCCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccC
Confidence 44466778999999998 67889999998876 68888887430
Q ss_pred -------------------C-------------------cEEEEEeCchHHHHHHHHHhCCceeCcE--EEEEEE
Q 016188 269 -------------------R-------------------GCGFVQFAARASAEEAILRMQGHMIGQQ--QVRISW 303 (394)
Q Consensus 269 -------------------~-------------------g~~fV~f~~~~~a~~a~~~l~g~~~~g~--~l~v~~ 303 (394)
+ =+|.|++.+.+.+......+.|.++... .+.+.|
T Consensus 220 ~dn~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRf 294 (622)
T COG5638 220 DDNVFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRF 294 (622)
T ss_pred CccchhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeee
Confidence 1 1688999999999999999999887643 444444
No 231
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=53.30 E-value=34 Score=26.04 Aligned_cols=47 Identities=17% Similarity=0.315 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHhhCCCeeEEEEeeC----CCCCCCccEEEEEeCCHHHHH
Q 016188 126 PDVTDYLLQETFRSQYPSVRGAKVVTD----PNTGRSKGYGFVKFLDENERN 173 (394)
Q Consensus 126 ~~~t~~~l~~~f~~~~G~v~~v~i~~~----~~tg~~~g~afV~f~~~e~a~ 173 (394)
..++.+||++-+...|-.-.++.++.+ --.|++.|||.| |.+.|.|.
T Consensus 33 a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~ak 83 (132)
T KOG3424|consen 33 ANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAK 83 (132)
T ss_pred CCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHH
Confidence 356788999988766765444444333 234788889987 56665553
No 232
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=49.48 E-value=2.9 Score=40.50 Aligned_cols=70 Identities=9% Similarity=0.029 Sum_probs=45.2
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCC
Q 016188 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMP 91 (394)
Q Consensus 22 ~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~ 91 (394)
..++|+++|+++.++-.+|+.++..+--+..+-....---..-..+.||.|+---....|...||+.-+.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 4578999999999999999999998865555433222111234567889996444444444444554443
No 233
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=48.80 E-value=26 Score=28.93 Aligned_cols=49 Identities=18% Similarity=0.139 Sum_probs=34.2
Q ss_pred CCHHHHHHHHh-hcCCceEEEEeecCCCC--CCcceEEEEEcCHHHHHHHHHH
Q 016188 35 FDENYLSSCFA-HTGEVVSIKIIRNKITG--QPEGYGFVEFVSHAAAERVLQT 84 (394)
Q Consensus 35 ~~e~~l~~~f~-~~G~v~~v~i~~~~~~g--~~~g~afV~f~~~e~A~~a~~~ 84 (394)
.+++.|..+.. .-|.+..|...+.. ++ ..+|..||.|.+.+.|..+++.
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhh
Confidence 44555554442 12678888776655 44 4578999999999999998865
No 234
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=47.64 E-value=49 Score=26.43 Aligned_cols=116 Identities=16% Similarity=0.040 Sum_probs=64.2
Q ss_pred EEEcCCC--CcCCHHHHHHHHhhc-CCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeeeecc
Q 016188 26 LWIGDLQ--YWFDENYLSSCFAHT-GEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWA 102 (394)
Q Consensus 26 v~V~nLp--~~~~e~~l~~~f~~~-G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~~~~ 102 (394)
..|+.+. ...+-..|...+.+. +....+.+..-. .++..+.|.+++++.++++ +.++.-....+.+..-
T Consensus 18 ~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l~-----~~~fl~~F~~~~d~~~vl~---~~p~~~~~~~~~l~~W 89 (153)
T PF14111_consen 18 CLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDLG-----DNLFLFQFESEEDRQRVLK---GGPWNFNGHFLILQRW 89 (153)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEeC-----CCeEEEEEEeccceeEEEe---cccccccccchhhhhh
Confidence 4444442 345666777666542 333234444332 3789999999999999985 3332222233333222
Q ss_pred cCCCCCCCCCCCCcce--EEEcCCCCC-CCHHHHHHHHHhhCCCeeEEEEee
Q 016188 103 SFGIGEKRPDAGPEHS--IFVGDLAPD-VTDYLLQETFRSQYPSVRGAKVVT 151 (394)
Q Consensus 103 ~~~~~~~~~~~~~~~~--l~v~nlp~~-~t~~~l~~~f~~~~G~v~~v~i~~ 151 (394)
........ ....... |.|.|||.. .+++-+..+. +..|.+.++....
T Consensus 90 ~~~~~~~~-~~~~~~~vWVri~glP~~~~~~~~~~~i~-~~iG~~i~vD~~t 139 (153)
T PF14111_consen 90 SPDFNPSE-VKFEHIPVWVRIYGLPLHLWSEEILKAIG-SKIGEPIEVDENT 139 (153)
T ss_pred cccccccc-cceeccchhhhhccCCHHHhhhHHHHHHH-HhcCCeEEEEcCC
Confidence 11111000 1111222 556899987 5667777777 8999998886544
No 235
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=46.82 E-value=64 Score=24.01 Aligned_cols=45 Identities=22% Similarity=0.304 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHhhCCCeeEEEEeeCCCC----CCCccEEEEEeCCHHHH
Q 016188 127 DVTDYLLQETFRSQYPSVRGAKVVTDPNT----GRSKGYGFVKFLDENER 172 (394)
Q Consensus 127 ~~t~~~l~~~f~~~~G~v~~v~i~~~~~t----g~~~g~afV~f~~~e~a 172 (394)
..+..+|++-+...++.=.+..++..-.| |++.|||.| |.+.+.+
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~ 78 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERA 78 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHH
Confidence 55678888888777776545555544333 355555554 4444444
No 236
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=44.66 E-value=21 Score=30.80 Aligned_cols=36 Identities=17% Similarity=0.225 Sum_probs=30.1
Q ss_pred CcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEE
Q 016188 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIK 54 (394)
Q Consensus 19 ~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~ 54 (394)
+..+.++||+-|||..++++.|.++..++|-++.+.
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 444667899999999999999999999998665443
No 237
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=43.49 E-value=6.1 Score=38.38 Aligned_cols=66 Identities=15% Similarity=0.241 Sum_probs=53.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEeCchHHHHHHHHHhCCceeCcE
Q 016188 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQ 297 (394)
Q Consensus 232 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~ 297 (394)
..|+|||.|+++.++-.+|..+++.+-.+.++.+... ..+.+|+|+---....|+.+||+..+...
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 4578999999999999999999999988887777543 46789999988888888888887765443
No 238
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=43.37 E-value=92 Score=20.30 Aligned_cols=46 Identities=11% Similarity=0.151 Sum_probs=37.2
Q ss_pred EEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchH
Q 016188 235 TIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARA 280 (394)
Q Consensus 235 ~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~ 280 (394)
++.|.||.=.--...|++.+...-.|.++.+....+.+-|.|....
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~ 46 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDK 46 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTT
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCC
Confidence 3566666655557888999999999999999998999999998654
No 239
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.04 E-value=1.3e+02 Score=28.44 Aligned_cols=54 Identities=22% Similarity=0.249 Sum_probs=42.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhhCCC-eeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHH
Q 016188 116 EHSIFVGDLAPDVTDYLLQETFRSQYPS-VRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMT 177 (394)
Q Consensus 116 ~~~l~v~nlp~~~t~~~l~~~f~~~~G~-v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~ 177 (394)
...|-|.++|.....+||...| +.|+. -.+|.++.|. .+|..|.+...|..|+-
T Consensus 391 pHVlEIydfp~efkteDll~~f-~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAF-ETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALT 445 (528)
T ss_pred cceeEeccCchhhccHHHHHHH-HHhhcCCceeEEeecc-------eeEEeecchHHHHHHhh
Confidence 4678899999999999999999 67764 2344444442 79999999999999994
No 240
>PRK11901 hypothetical protein; Reviewed
Probab=41.62 E-value=1.2e+02 Score=27.82 Aligned_cols=64 Identities=17% Similarity=0.151 Sum_probs=43.8
Q ss_pred cCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCc-ceEEEEEcCHHHHHHHHHHcCC
Q 016188 20 LEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPE-GYGFVEFVSHAAAERVLQTYNG 87 (394)
Q Consensus 20 ~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~-g~afV~f~~~e~A~~a~~~l~~ 87 (394)
+....+|-|-.+ -.++.|+.+..+.+ +..+++.+...+|+.- ..-|=.|.+.++|+.|++.|-.
T Consensus 242 p~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 242 PASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCH
Confidence 344566777665 35888998888875 5667777766555532 1123468999999999988753
No 241
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.28 E-value=4.6 Score=37.94 Aligned_cols=79 Identities=8% Similarity=-0.154 Sum_probs=59.2
Q ss_pred ceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeeeeccc
Q 016188 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWAS 103 (394)
Q Consensus 24 ~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~~~~~ 103 (394)
.+.++..||...+++++..+|+.||-|..+...+....+-....+||.-.+. ++..||+.+.-..+.+...++.+....
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~~-~~~~~i~~~k~q~~~~~~~r~~~~~~s 82 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKKA-NGPNYIQPQKRQTTFESQDRKAVSPSS 82 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeecc-CcccccCHHHHhhhhhhhhhhhcCchh
Confidence 3467888999999999999999999988888777766666677788876554 477888766666666655555554443
No 242
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=39.60 E-value=27 Score=32.50 Aligned_cols=69 Identities=12% Similarity=0.081 Sum_probs=48.6
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHhhcCC-ceEEEEeecCC--CCCCcceEEEEEcCHHHHHHHHHHcCCCCC
Q 016188 22 EVRTLWIGDLQYWFDENYLSSCFAHTGE-VVSIKIIRNKI--TGQPEGYGFVEFVSHAAAERVLQTYNGTPM 90 (394)
Q Consensus 22 ~~~~v~V~nLp~~~~e~~l~~~f~~~G~-v~~v~i~~~~~--~g~~~g~afV~f~~~e~A~~a~~~l~~~~~ 90 (394)
..+.|.|++||+..++.+|.+-+..+-. +....+..... .+.-.+.|||.|...++.......++|..+
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 4567999999999999999988887644 33333332110 112246789999999998888877776544
No 243
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=37.78 E-value=61 Score=24.65 Aligned_cols=118 Identities=17% Similarity=0.172 Sum_probs=57.5
Q ss_pred CCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeeeecccCCCCCC
Q 016188 30 DLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWASFGIGEK 109 (394)
Q Consensus 30 nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~~~~~~~~~~~ 109 (394)
-||+-+++ |-++|+.=|+|.+|..+..-.++. |... ..-.++..+|..+-|... ......
T Consensus 10 VlPPYTnK--LSDYfeSPGKI~svItvtqypdnd----al~~------~~G~lE~vDg~i~IGs~q--------~~~sV~ 69 (145)
T TIGR02542 10 VLPPYTNK--LSDYFESPGKIQSVITVTQYPDND----ALLY------VHGTLEQVDGNIRIGSGQ--------TPASVR 69 (145)
T ss_pred ecCCccch--hhHHhcCCCceEEEEEEeccCCch----hhhe------eeeehhhccCcEEEccCC--------CcccEE
Confidence 37776665 899999999999986554321111 1110 011122333332222211 100000
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHHhh--CCCeeEEEEeeCCCCCCCccEEEEEeCCH
Q 016188 110 RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQ--YPSVRGAKVVTDPNTGRSKGYGFVKFLDE 169 (394)
Q Consensus 110 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~--~G~v~~v~i~~~~~tg~~~g~afV~f~~~ 169 (394)
.......+.+ .--|..+|-.+++++|++. |-.|..-.+.+|--..-+-..||..|...
T Consensus 70 i~gTPsgnnv--~F~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 70 IQGTPSGNNV--IFPPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred EecCCCCCce--ecCceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 1111112222 2246788999999999643 33344444444422112333788888665
No 244
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=37.27 E-value=1.2e+02 Score=21.44 Aligned_cols=58 Identities=10% Similarity=0.053 Sum_probs=42.4
Q ss_pred eEEEcCCCCcCCHHHHHHHHhh-cCC-ceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHc
Q 016188 25 TLWIGDLQYWFDENYLSSCFAH-TGE-VVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85 (394)
Q Consensus 25 ~v~V~nLp~~~~e~~l~~~f~~-~G~-v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l 85 (394)
.-|+-.++.+++..+|+++++. |+. |..|....-+ ....-|||.+...++|.+.-..+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~---~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP---RGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCceEEEEEECCCCcHHHHHHhh
Confidence 3566678899999999999977 453 6666655544 22345999999999888876543
No 245
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=37.02 E-value=1.1e+02 Score=22.05 Aligned_cols=58 Identities=9% Similarity=0.040 Sum_probs=43.0
Q ss_pred eEEEcCCCCcCCHHHHHHHHhh-cCC-ceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHc
Q 016188 25 TLWIGDLQYWFDENYLSSCFAH-TGE-VVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85 (394)
Q Consensus 25 ~v~V~nLp~~~~e~~l~~~f~~-~G~-v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l 85 (394)
.-|.-.+..+++..+|++.++. ||. |.+|.....+ ....-|||.+...++|.+....+
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~---~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP---KGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCcEEEEEEeCCCCcHHHHHHhh
Confidence 3555567899999999999977 553 6777666554 22355999999999999887553
No 246
>PF14893 PNMA: PNMA
Probab=36.63 E-value=28 Score=32.30 Aligned_cols=28 Identities=11% Similarity=0.130 Sum_probs=23.5
Q ss_pred CcCCcceEEEcCCCCcCCHHHHHHHHhh
Q 016188 19 TLEEVRTLWIGDLQYWFDENYLSSCFAH 46 (394)
Q Consensus 19 ~~~~~~~v~V~nLp~~~~e~~l~~~f~~ 46 (394)
.-+..|.|.|.+||.+|+++||++.+..
T Consensus 14 ~~~~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 14 GVDPQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred CcChhhhheeecCCCCCCHHHHHHHHHH
Confidence 4466788999999999999999887654
No 247
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=35.66 E-value=17 Score=33.96 Aligned_cols=62 Identities=21% Similarity=0.148 Sum_probs=51.4
Q ss_pred CcceEEEcCCCCcCCHH--------HHHHHHhh--cCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHH
Q 016188 22 EVRTLWIGDLQYWFDEN--------YLSSCFAH--TGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQ 83 (394)
Q Consensus 22 ~~~~v~V~nLp~~~~e~--------~l~~~f~~--~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~ 83 (394)
..|.+|+.+...+-..+ ++...|.. .+++..|...++......+|..|++|...+.+++...
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 45678888888776555 89999988 6788888888887667788999999999999999874
No 248
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=34.66 E-value=1.1e+02 Score=24.08 Aligned_cols=49 Identities=20% Similarity=0.365 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHhhCC-CeeEEEEeeCCCC----CCCccEEEEEeCCHHHHHHHHH
Q 016188 127 DVTDYLLQETFRSQYP-SVRGAKVVTDPNT----GRSKGYGFVKFLDENERNRAMT 177 (394)
Q Consensus 127 ~~t~~~l~~~f~~~~G-~v~~v~i~~~~~t----g~~~g~afV~f~~~e~a~~ai~ 177 (394)
..+..+|++.+...|+ .=.++.++..-.| |++.|||.| .+..++...++
T Consensus 35 TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I--Yds~e~~kk~E 88 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI--YDNLAALKKFE 88 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE--ECCHHHHHhhC
Confidence 5677899998877787 3333434333222 455555555 44444444443
No 249
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=33.80 E-value=96 Score=21.22 Aligned_cols=63 Identities=13% Similarity=0.121 Sum_probs=42.5
Q ss_pred HHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeecCC
Q 016188 131 YLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATP 196 (394)
Q Consensus 131 ~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a~~ 196 (394)
++|.+.|....=+|..+.-+..+.++.....-||+.....+...+ ++-..+.+..+.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCC
Confidence 567788844444588888888876777778889998877553322 234456777788776543
No 250
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=33.77 E-value=74 Score=22.74 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=23.2
Q ss_pred CceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCC
Q 016188 49 EVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNG 87 (394)
Q Consensus 49 ~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~ 87 (394)
.|.+|-...+ -+||-|||=.++.++.+|++.+.+
T Consensus 33 ~I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 33 NIYSIFAPDS-----LKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp ---EEEE-TT-----STSEEEEEESSHHHHHHHHTT-TT
T ss_pred ceEEEEEeCC-----CceEEEEEeCCHHHHHHHHhcccc
Confidence 3666643333 589999999999999999976554
No 251
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=33.67 E-value=79 Score=22.59 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=24.4
Q ss_pred CeEEEEEeCC-CcEEEEEeCchHHHHHHHHHhCCc
Q 016188 259 EIVNVKIPMG-RGCGFVQFAARASAEEAILRMQGH 292 (394)
Q Consensus 259 ~i~~~~i~~~-~g~~fV~f~~~~~a~~a~~~l~g~ 292 (394)
.|.++..+.+ +||-||+=.+.++...|+..+.+-
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhcccce
Confidence 5667666655 899999999999999999887643
No 252
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=33.17 E-value=77 Score=29.20 Aligned_cols=31 Identities=23% Similarity=0.282 Sum_probs=21.3
Q ss_pred EEEEeCCHHHHHHHHHhhCCeeecCcceEEeec
Q 016188 162 GFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (394)
Q Consensus 162 afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a 194 (394)
|||+|++..+|..|.+.+.... .+.+.+..|
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~A 31 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPA 31 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeC
Confidence 7999999999999997544322 233455444
No 253
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=31.93 E-value=1.8e+02 Score=20.22 Aligned_cols=43 Identities=19% Similarity=0.166 Sum_probs=32.8
Q ss_pred HHHHHHHhcccCCeEEEEEeCC--CcEEEEEeCchHHHHHHHHHhC
Q 016188 247 EEELKQTFLHFGEIVNVKIPMG--RGCGFVQFAARASAEEAILRMQ 290 (394)
Q Consensus 247 ~~~l~~~F~~~G~i~~~~i~~~--~g~~fV~f~~~~~a~~a~~~l~ 290 (394)
-.+|.+.+..+| +....+.-. .++.|+-+.+.+.+.++.+.+.
T Consensus 36 i~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 36 IDELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 356777788888 666666655 6788889989999998887764
No 254
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=31.81 E-value=1.8e+02 Score=20.21 Aligned_cols=43 Identities=19% Similarity=0.171 Sum_probs=29.2
Q ss_pred HHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHc
Q 016188 38 NYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY 85 (394)
Q Consensus 38 ~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l 85 (394)
.+|.+.+..+| +.-.++.-.. .-++.|+.+.+.+++.++.+.+
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG----~G~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSG----GGPTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTS----SSSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCC----CCCeEEEEECCHHHHHHHHHHH
Confidence 34677778888 4445554331 1367888888999999888765
No 255
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=30.37 E-value=69 Score=29.97 Aligned_cols=62 Identities=26% Similarity=0.368 Sum_probs=44.9
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhcccCCeEE-EEEeC-C-------CcEEEEEeCchHHHHHHHHHhCCcee
Q 016188 233 NTTIFVGNLDPNVTEEELKQTFLHFGEIVN-VKIPM-G-------RGCGFVQFAARASAEEAILRMQGHMI 294 (394)
Q Consensus 233 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~-~~i~~-~-------~g~~fV~f~~~~~a~~a~~~l~g~~~ 294 (394)
.+.+.|.+||+..++++|.+...++-.=.. ..+.+ + .+.++|.|...++...-...++|+.+
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 367889999999999999888776532222 22221 1 37899999999997777777787763
No 256
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=30.18 E-value=52 Score=29.13 Aligned_cols=69 Identities=19% Similarity=0.421 Sum_probs=43.3
Q ss_pred CcceEEEcCCCCc------------CCHHHHHHHHhhcCCceEEEEee-----cCCCCCC-----cceE---------EE
Q 016188 22 EVRTLWIGDLQYW------------FDENYLSSCFAHTGEVVSIKIIR-----NKITGQP-----EGYG---------FV 70 (394)
Q Consensus 22 ~~~~v~V~nLp~~------------~~e~~l~~~f~~~G~v~~v~i~~-----~~~~g~~-----~g~a---------fV 70 (394)
...+|++.+||-. -+++-|+..|+.||.|..|.|+. ...+|+. +||+ ||
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayv 227 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYV 227 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHH
Confidence 3457999999853 25677999999999988887752 2234443 2333 34
Q ss_pred EEcCHHHHHHHHHHcCCCCC
Q 016188 71 EFVSHAAAERVLQTYNGTPM 90 (394)
Q Consensus 71 ~f~~~e~A~~a~~~l~~~~~ 90 (394)
+|-.-..-..|+..|.|..|
T Consensus 228 qfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 228 QFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHhHHHHHHHHhcchH
Confidence 44444444555556666554
No 257
>COG4907 Predicted membrane protein [Function unknown]
Probab=28.46 E-value=1.2e+02 Score=29.32 Aligned_cols=17 Identities=12% Similarity=0.059 Sum_probs=8.6
Q ss_pred HHHHHHHHHhCCce-eCc
Q 016188 280 ASAEEAILRMQGHM-IGQ 296 (394)
Q Consensus 280 ~~a~~a~~~l~g~~-~~g 296 (394)
+...+|++.++-.+ +.+
T Consensus 526 dkVvkam~~~~~~e~ikd 543 (595)
T COG4907 526 DKVVKAMRKALDMEIIKD 543 (595)
T ss_pred HHHHHHHHHhCcHhHhcc
Confidence 44555655555443 444
No 258
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=28.10 E-value=1.7e+02 Score=18.91 Aligned_cols=54 Identities=9% Similarity=0.008 Sum_probs=40.4
Q ss_pred eEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCH----HHHHHHHHH
Q 016188 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSH----AAAERVLQT 84 (394)
Q Consensus 25 ~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~----e~A~~a~~~ 84 (394)
++.|.|+--.--...|++.+...-.|.++.+-... +.+-|.|... ++..++++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~------~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET------KTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC------CEEEEEEecCCCCHHHHHHHHHH
Confidence 57788888877888899999998778888875543 6688888644 555666554
No 259
>PHA01632 hypothetical protein
Probab=27.48 E-value=68 Score=20.75 Aligned_cols=21 Identities=14% Similarity=0.120 Sum_probs=17.3
Q ss_pred EEEcCCCCcCCHHHHHHHHhh
Q 016188 26 LWIGDLQYWFDENYLSSCFAH 46 (394)
Q Consensus 26 v~V~nLp~~~~e~~l~~~f~~ 46 (394)
|.|..+|..-||++|++.+.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 567889999999999977654
No 260
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=27.23 E-value=1.4e+02 Score=21.84 Aligned_cols=52 Identities=15% Similarity=0.199 Sum_probs=36.5
Q ss_pred cCCCCCCCHHHHHHHhcccCC-eEEEEEeCC--CcEEEEEeCchHHHHHHHHHhC
Q 016188 239 GNLDPNVTEEELKQTFLHFGE-IVNVKIPMG--RGCGFVQFAARASAEEAILRMQ 290 (394)
Q Consensus 239 ~nl~~~~t~~~l~~~F~~~G~-i~~~~i~~~--~g~~fV~f~~~~~a~~a~~~l~ 290 (394)
-.+-+.++...|..-|-.-|. -....+.+| +..|.|+|.+.+.+..|...|.
T Consensus 18 YS~~p~l~~~~i~~Q~~~~gkk~~pp~lRkD~W~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 18 YSQTPNLDNNQILKQFPFPGKKNKPPSLRKDYWRPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred EecCcccChhHHHHhccCCCcccCCchhccccceEeEEEECCChHHHHHHHHHHH
Confidence 345666777777766665553 223344455 7899999999999999988774
No 261
>COG2004 RPS24A Ribosomal protein S24E [Translation, ribosomal structure and biogenesis]
Probab=27.13 E-value=2.3e+02 Score=21.40 Aligned_cols=46 Identities=24% Similarity=0.311 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHHHhhCCCeeEEEEeeCCCC----CCCccEEEEEeCCHHHH
Q 016188 126 PDVTDYLLQETFRSQYPSVRGAKVVTDPNT----GRSKGYGFVKFLDENER 172 (394)
Q Consensus 126 ~~~t~~~l~~~f~~~~G~v~~v~i~~~~~t----g~~~g~afV~f~~~e~a 172 (394)
...+.++|++-+...++.-.++.++....| ++++||+-| |.+.+.+
T Consensus 30 ~TPSr~evrekla~~l~~d~e~VvV~~ikt~fG~~~s~g~akI-Y~s~e~~ 79 (107)
T COG2004 30 PTPSRKEVREKLAAMLGADKELVVVDYIKTEFGKGRSKGYAKI-YDSVERA 79 (107)
T ss_pred CCCCHHHHHHHHHHHHCCCcceEEEEehhhhcCCcceeEEEEE-ECCHHHH
Confidence 345678899888788887666666655433 456666655 4555544
No 262
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=26.49 E-value=85 Score=28.94 Aligned_cols=19 Identities=16% Similarity=0.261 Sum_probs=10.5
Q ss_pred EEEcCCCCCCCHHHHHHHH
Q 016188 119 IFVGDLAPDVTDYLLQETF 137 (394)
Q Consensus 119 l~v~nlp~~~t~~~l~~~f 137 (394)
|-+...|.++++..|.+-+
T Consensus 152 L~~~k~p~Nin~~~lfe~i 170 (465)
T KOG3973|consen 152 LNFPKQPGNINEWKLFETI 170 (465)
T ss_pred cCCCCCCCCchHHHHHHHH
Confidence 3344455666666555555
No 263
>PF11061 DUF2862: Protein of unknown function (DUF2862); InterPro: IPR021291 This family of proteins has no known function.
Probab=26.47 E-value=1.5e+02 Score=20.01 Aligned_cols=40 Identities=23% Similarity=0.436 Sum_probs=27.4
Q ss_pred cCCCCCCCHHHHHHHhcc--cCCeEEEEEeCCCcEEE-EEeCch
Q 016188 239 GNLDPNVTEEELKQTFLH--FGEIVNVKIPMGRGCGF-VQFAAR 279 (394)
Q Consensus 239 ~nl~~~~t~~~l~~~F~~--~G~i~~~~i~~~~g~~f-V~f~~~ 279 (394)
.-+-..+..+-+. .... .|.|...++..++|.++ |+|+|-
T Consensus 10 ~~irDRi~~~l~~-~l~~~~~g~I~~fKmtDG~giG~vv~~~ng 52 (64)
T PF11061_consen 10 SRIRDRIPKELVD-KLGKNPIGTIKGFKMTDGSGIGVVVEFSNG 52 (64)
T ss_pred hhhhhhccHHHHH-HhccCCcEEEEEEEEecCCcEEEEEEecCC
Confidence 4444555555444 4444 89999999999999775 578763
No 264
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=26.47 E-value=1.4e+02 Score=24.11 Aligned_cols=45 Identities=22% Similarity=0.231 Sum_probs=30.2
Q ss_pred HHHHHHHHhh----cCC-ceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcC
Q 016188 37 ENYLSSCFAH----TGE-VVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYN 86 (394)
Q Consensus 37 e~~l~~~f~~----~G~-v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~ 86 (394)
|+.+...+.+ .+. |.+|.+... -.||.||+....+++..+++.+.
T Consensus 18 E~~V~~~L~~~~~~~~~~i~~i~vp~~-----fpGYVfVe~~~~~~~~~~i~~v~ 67 (153)
T PRK08559 18 ERNVALMLAMRAKKENLPIYAILAPPE-----LKGYVLVEAESKGAVEEAIRGIP 67 (153)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEccCC-----CCcEEEEEEEChHHHHHHHhcCC
Confidence 5555544433 222 666665554 48999999998899999986543
No 265
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=26.30 E-value=1.3e+02 Score=27.58 Aligned_cols=55 Identities=22% Similarity=0.272 Sum_probs=34.5
Q ss_pred EEEEEcCHHHHHHHHHHcCCCCCCCccceeeeecccCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHH
Q 016188 68 GFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETF 137 (394)
Q Consensus 68 afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f 137 (394)
|||.|++..+|..|++.+....- ..+.+..|. +.+-|.=.||..+..+..++..+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~----~~~~v~~AP-----------eP~DI~W~NL~~~~~~r~~R~~~ 55 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP----NSWRVSPAP-----------EPDDIIWENLSISSKQRFLRRII 55 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC----CCceEeeCC-----------CcccccccccCCChHHHHHHHHH
Confidence 79999999999999985444332 222333221 13345557776666666666655
No 266
>PF14893 PNMA: PNMA
Probab=26.03 E-value=78 Score=29.38 Aligned_cols=83 Identities=14% Similarity=0.288 Sum_probs=46.6
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCC-CCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEee
Q 016188 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDP-NTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISA 193 (394)
Q Consensus 115 ~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~-~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~ 193 (394)
+.+.|.|.+||.++++.+|.+.+....-.+-..++.... ....+.-.++|+|...-+-...=+.+-| .|...+|-+
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~n~~~iP~~i~g---~gg~W~Vv~ 93 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDVNYSLIPREIPG---KGGPWRVVF 93 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccccchhhCchhcCC---CCCceEEEe
Confidence 467799999999999999999885433333333332210 0012234788888765443222222211 456666665
Q ss_pred cCCCCCc
Q 016188 194 ATPKKTT 200 (394)
Q Consensus 194 a~~~~~~ 200 (394)
-.+....
T Consensus 94 ~p~~~D~ 100 (331)
T PF14893_consen 94 KPPAPDA 100 (331)
T ss_pred cCCCCCH
Confidence 5544443
No 267
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=23.91 E-value=57 Score=28.32 Aligned_cols=34 Identities=24% Similarity=0.321 Sum_probs=29.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEe
Q 016188 233 NTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIP 266 (394)
Q Consensus 233 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~ 266 (394)
..++|+-|+|..+|++.|..+.+..|.+..+...
T Consensus 40 Kd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y~ 73 (261)
T KOG4008|consen 40 KDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLYN 73 (261)
T ss_pred ccceeeecccccccHHHHHHHHHHhhhhhheecc
Confidence 4789999999999999999999999977665543
No 268
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=22.20 E-value=2.7e+02 Score=19.02 Aligned_cols=46 Identities=15% Similarity=0.287 Sum_probs=36.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCch
Q 016188 234 TTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAAR 279 (394)
Q Consensus 234 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~ 279 (394)
..+.|.++.=..=...++...+.-..|.++.+..+++.+.|+|++.
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~ 49 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSN 49 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCC
Confidence 4566666654445677888888888899999999999999999983
No 269
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=22.00 E-value=68 Score=18.87 Aligned_cols=16 Identities=25% Similarity=0.214 Sum_probs=10.3
Q ss_pred CcCCHHHHHHHHhhcC
Q 016188 33 YWFDENYLSSCFAHTG 48 (394)
Q Consensus 33 ~~~~e~~l~~~f~~~G 48 (394)
.++++++|++.|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3678999999998764
No 270
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=21.38 E-value=3.2e+02 Score=19.63 Aligned_cols=57 Identities=11% Similarity=0.167 Sum_probs=40.2
Q ss_pred EEEcCCCCCCCHHHHHHHHHhhCCC-eeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHh
Q 016188 119 IFVGDLAPDVTDYLLQETFRSQYPS-VRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTE 178 (394)
Q Consensus 119 l~v~nlp~~~t~~~l~~~f~~~~G~-v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~ 178 (394)
-++--+....+..+|++.++..|+. |..|..+..+. ..--|||.+...++|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHHh
Confidence 4444567888999999999777774 66666655432 223599999998888776543
No 271
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=21.35 E-value=6.7e+02 Score=23.31 Aligned_cols=114 Identities=11% Similarity=0.131 Sum_probs=61.5
Q ss_pred CCCCcCCHHHHHH----HHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeeeecccCC
Q 016188 30 DLQYWFDENYLSS----CFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWASFG 105 (394)
Q Consensus 30 nLp~~~~e~~l~~----~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~~~~~~~ 105 (394)
|.|++-+-|.++. +++++|.-.++++.+....++..|.+.+...... .+....+.....-.+
T Consensus 119 ~~~~sPsvD~~~~v~lP~l~~~G~~~~l~v~rRG~yP~GgGeV~~~v~p~~-------~l~~i~l~~~g~i~~------- 184 (326)
T cd00874 119 DVPWAPPIDYLRNVTLPLLERMGIEAELEVLRRGFYPRGGGEVVLTVEPSK-------LLPPLLLEERGEIEK------- 184 (326)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcEEEEEEeCCcCCCCCEEEEEEEeccc-------CCCcceeecCCCeEE-------
Confidence 4466666666665 4577888778888777655554555555443321 111111111110000
Q ss_pred CCCCCCCCCCcceEEEcCCCCCCCHHHHHH---HHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCC
Q 016188 106 IGEKRPDAGPEHSIFVGDLAPDVTDYLLQE---TFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLD 168 (394)
Q Consensus 106 ~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~---~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~ 168 (394)
-.-..+..+||.++.+.++.. .+ ... ...++.+..+...+.+.|++.+.+..
T Consensus 185 ---------irg~~~~~~l~~~va~r~~~~a~~~L-~~~-~~~dv~i~~~~~~~~s~G~~i~L~ae 239 (326)
T cd00874 185 ---------IRGISHAANLPPHVAERQAEAAAALL-RKA-LGLQIEIEPEDQSALGPGSGIVLWAE 239 (326)
T ss_pred ---------EEEEEEEccCCHHHHHHHHHHHHHHH-hhc-cCCCeEEEEEecCCCCCCEEEEEEEE
Confidence 022467789998887765544 44 331 22345555555557888888776653
No 272
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=20.86 E-value=3.4e+02 Score=19.82 Aligned_cols=54 Identities=6% Similarity=0.052 Sum_probs=39.3
Q ss_pred CCCCcCCHHHHHHH----------HhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCC
Q 016188 30 DLQYWFDENYLSSC----------FAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNG 87 (394)
Q Consensus 30 nLp~~~~e~~l~~~----------f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~ 87 (394)
++|.+++.+++.++ +..-|.+..++-+. |+...++.+.-.|.++....+..|-=
T Consensus 10 ~~P~~~~~~~~~~~~a~E~~~a~eLq~~G~~~~lWr~~----G~~~n~~Ifdv~d~~eLh~lL~sLPL 73 (91)
T PF02426_consen 10 NVPPDMPPEEVDRLKAREKARAQELQRQGKWRHLWRVV----GRYANVSIFDVEDNDELHELLSSLPL 73 (91)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeEEEEec----CCcceEEEEECCCHHHHHHHHHhCCC
Confidence 68898888876544 34458888887644 55778888888888888877765443
No 273
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=20.23 E-value=3.2e+02 Score=19.15 Aligned_cols=62 Identities=13% Similarity=0.101 Sum_probs=41.3
Q ss_pred EEEcCCCCcCCHHHHHHHHhhc-------CCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCC
Q 016188 26 LWIGDLQYWFDENYLSSCFAHT-------GEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPM 90 (394)
Q Consensus 26 v~V~nLp~~~~e~~l~~~f~~~-------G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~ 90 (394)
|-.++||..+|.++|..+-.+. ..|.-++-..+. ...+-||+.+=.|+|+..++.+. .|.+.
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~--d~~k~~Cly~Ap~~eaV~~~~~~-aG~p~ 71 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSE--DDGKIFCLYEAPDEEAVREHARR-AGLPA 71 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEec--CCCeEEEEEECCCHHHHHHHHHH-cCCCc
Confidence 5678899999999988765443 233334333332 23468888888999988888865 35444
No 274
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=20.16 E-value=2e+02 Score=19.76 Aligned_cols=62 Identities=8% Similarity=0.026 Sum_probs=40.7
Q ss_pred HHHHHHHHhhCC-CeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeecCC
Q 016188 131 YLLQETFRSQYP-SVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATP 196 (394)
Q Consensus 131 ~~l~~~f~~~~G-~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a~~ 196 (394)
++|.+.| ...| .+..+.-+..+.++.....-+|+.....+... -++-+.+.++.+.|+....
T Consensus 2 ~~I~~~L-~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEAL-KDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHH-HHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 4677778 4555 47888888887767677778888877643332 2233446788888876543
Done!