Query 016188
Match_columns 394
No_of_seqs 275 out of 2833
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 09:23:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016188.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016188hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 9.2E-46 3.1E-50 336.6 29.0 241 21-309 20-266 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 4.8E-45 1.6E-49 333.2 27.9 248 17-307 35-291 (292)
3 4f02_A Polyadenylate-binding p 100.0 4.3E-35 1.5E-39 254.5 16.1 167 113-308 12-182 (213)
4 4f02_A Polyadenylate-binding p 100.0 9.1E-34 3.1E-38 246.1 16.7 172 20-199 12-183 (213)
5 1l3k_A Heterogeneous nuclear r 100.0 7.3E-33 2.5E-37 237.5 20.7 173 111-310 8-186 (196)
6 3md3_A Nuclear and cytoplasmic 100.0 8.1E-33 2.8E-37 230.6 20.1 165 24-195 1-165 (166)
7 1l3k_A Heterogeneous nuclear r 100.0 1.2E-32 4E-37 236.2 20.8 181 16-200 6-186 (196)
8 2qfj_A FBP-interacting repress 100.0 1.3E-33 4.6E-38 245.9 14.0 178 19-199 24-207 (216)
9 1b7f_A Protein (SXL-lethal pro 100.0 2.4E-32 8.2E-37 228.3 19.6 165 22-194 2-168 (168)
10 1fxl_A Paraneoplastic encephal 100.0 3.1E-32 1E-36 227.3 20.1 164 23-194 2-167 (167)
11 1b7f_A Protein (SXL-lethal pro 100.0 2.9E-32 1E-36 227.7 19.7 159 115-304 2-168 (168)
12 3md3_A Nuclear and cytoplasmic 100.0 4.3E-32 1.5E-36 226.2 20.6 160 117-306 1-166 (166)
13 2qfj_A FBP-interacting repress 100.0 1.8E-32 6E-37 238.8 18.8 176 115-310 27-208 (216)
14 1fxl_A Paraneoplastic encephal 100.0 6.4E-32 2.2E-36 225.4 20.7 159 115-304 1-167 (167)
15 3nmr_A Cugbp ELAV-like family 100.0 8.7E-32 3E-36 226.4 20.2 168 22-195 2-175 (175)
16 2cjk_A Nuclear polyadenylated 100.0 1.3E-32 4.4E-37 229.7 14.1 166 21-197 1-166 (167)
17 3nmr_A Cugbp ELAV-like family 100.0 3.7E-31 1.3E-35 222.5 18.9 161 115-305 2-175 (175)
18 2cjk_A Nuclear polyadenylated 100.0 4.8E-32 1.6E-36 226.3 12.9 159 115-307 2-166 (167)
19 3pgw_A U1-A; protein-RNA compl 100.0 3.5E-30 1.2E-34 233.6 23.9 191 112-306 5-282 (282)
20 2adc_A Polypyrimidine tract-bi 100.0 2.1E-30 7.1E-35 227.5 21.6 189 113-307 31-228 (229)
21 2yh0_A Splicing factor U2AF 65 100.0 6.7E-31 2.3E-35 225.6 16.6 177 115-309 3-196 (198)
22 2g4b_A Splicing factor U2AF 65 100.0 1.8E-30 6.3E-35 217.7 18.5 160 21-195 2-172 (172)
23 1fje_B Nucleolin RBD12, protei 100.0 7.2E-31 2.5E-35 220.8 14.8 164 112-307 9-174 (175)
24 3tyt_A Heterogeneous nuclear r 100.0 5.2E-30 1.8E-34 220.1 19.6 184 115-304 3-204 (205)
25 1qm9_A Polypyrimidine tract-bi 100.0 3.9E-30 1.3E-34 220.8 18.3 186 116-307 3-197 (198)
26 2yh0_A Splicing factor U2AF 65 100.0 7.9E-30 2.7E-34 218.9 18.7 169 21-199 2-196 (198)
27 2g4b_A Splicing factor U2AF 65 100.0 1.5E-29 5.1E-34 212.1 19.2 153 115-305 3-172 (172)
28 3tyt_A Heterogeneous nuclear r 100.0 1.5E-29 5E-34 217.3 18.5 166 21-194 2-204 (205)
29 1fje_B Nucleolin RBD12, protei 100.0 1.8E-30 6.2E-35 218.4 12.5 167 18-197 8-174 (175)
30 3smz_A Protein raver-1, ribonu 100.0 4.7E-29 1.6E-33 226.4 20.8 173 22-200 94-267 (284)
31 3pgw_A U1-A; protein-RNA compl 100.0 1E-28 3.5E-33 223.9 22.0 169 18-195 4-281 (282)
32 2ghp_A U4/U6 snRNA-associated 100.0 2.6E-29 8.9E-34 229.0 17.8 171 22-197 116-291 (292)
33 2adc_A Polypyrimidine tract-bi 100.0 2.3E-28 7.7E-33 214.5 21.3 168 19-197 30-228 (229)
34 3sde_A Paraspeckle component 1 100.0 3.2E-28 1.1E-32 217.7 19.1 160 18-198 17-180 (261)
35 1qm9_A Polypyrimidine tract-bi 100.0 3.2E-28 1.1E-32 208.9 17.7 164 23-197 3-197 (198)
36 3sde_A Paraspeckle component 1 100.0 1.7E-27 6E-32 213.0 19.5 154 113-309 19-181 (261)
37 2kn4_A Immunoglobulin G-bindin 99.9 3.3E-22 1.1E-26 164.8 15.3 146 52-200 2-153 (158)
38 2kn4_A Immunoglobulin G-bindin 99.9 1.1E-21 3.8E-26 161.6 17.2 139 146-310 2-153 (158)
39 2i2y_A Fusion protein consists 99.9 4.1E-22 1.4E-26 162.6 11.0 138 156-308 10-149 (150)
40 4f25_A Polyadenylate-binding p 99.8 8.2E-21 2.8E-25 147.3 10.3 109 116-249 5-113 (115)
41 4f25_A Polyadenylate-binding p 99.8 5.7E-21 1.9E-25 148.2 9.1 106 23-132 5-113 (115)
42 2i2y_A Fusion protein consists 99.8 4.7E-20 1.6E-24 150.3 11.2 127 63-198 11-149 (150)
43 4fxv_A ELAV-like protein 1; RN 99.8 1.7E-19 5.9E-24 135.6 11.1 80 116-196 19-98 (99)
44 1sjq_A Polypyrimidine tract-bi 99.8 1.3E-19 4.6E-24 135.9 10.2 82 230-311 13-96 (105)
45 3r27_A HnRNP L, heterogeneous 99.8 3.8E-19 1.3E-23 132.0 11.1 79 230-308 18-98 (100)
46 4fxv_A ELAV-like protein 1; RN 99.8 3E-19 1E-23 134.3 10.5 75 232-306 18-98 (99)
47 1h2v_Z 20 kDa nuclear CAP bind 99.8 5E-19 1.7E-23 145.3 12.0 79 231-309 37-121 (156)
48 2wbr_A GW182, gawky, LD47780P; 99.8 4.2E-19 1.4E-23 126.7 9.8 74 232-305 6-79 (89)
49 2cq1_A PTB-like protein L; RRM 99.8 2.2E-18 7.5E-23 129.5 13.6 80 231-310 13-94 (101)
50 1wex_A Hypothetical protein (r 99.8 1.5E-18 5.1E-23 131.2 12.0 81 230-310 12-94 (104)
51 2lxi_A RNA-binding protein 10; 99.8 2.9E-19 1E-23 132.2 7.7 83 116-199 1-85 (91)
52 3s8s_A Histone-lysine N-methyl 99.8 1.5E-18 5.2E-23 133.0 11.7 84 114-198 4-87 (110)
53 2lea_A Serine/arginine-rich sp 99.8 3.8E-19 1.3E-23 141.8 8.6 126 66-200 5-130 (135)
54 2dgu_A Heterogeneous nuclear r 99.8 4.6E-18 1.6E-22 129.1 13.8 79 231-311 9-87 (103)
55 1x4d_A Matrin 3; structural ge 99.8 1E-18 3.5E-23 131.1 10.0 78 231-308 13-93 (102)
56 2ad9_A Polypyrimidine tract-bi 99.8 1.6E-18 5.5E-23 133.4 10.3 81 231-311 29-111 (119)
57 1why_A Hypothetical protein ri 99.8 3.6E-18 1.2E-22 128.2 11.6 80 230-309 14-95 (97)
58 1x4c_A Splicing factor, argini 99.8 1.1E-17 3.9E-22 128.0 14.5 78 231-309 13-95 (108)
59 2lkz_A RNA-binding protein 5; 99.8 1.2E-18 4E-23 129.5 8.5 83 113-196 6-94 (95)
60 2cq3_A RNA-binding protein 9; 99.8 1.3E-17 4.3E-22 126.7 14.4 83 228-310 10-96 (103)
61 2dgo_A Cytotoxic granule-assoc 99.8 1.4E-17 4.7E-22 129.3 14.6 82 229-310 11-98 (115)
62 2dgo_A Cytotoxic granule-assoc 99.8 1.2E-17 4.2E-22 129.5 14.3 91 109-200 8-98 (115)
63 1x4g_A Nucleolysin TIAR; struc 99.8 6.3E-18 2.2E-22 129.8 12.1 81 230-310 22-102 (109)
64 2dgx_A KIAA0430 protein; RRM d 99.8 7.7E-18 2.6E-22 126.1 12.0 79 231-309 7-92 (96)
65 2cpj_A Non-POU domain-containi 99.8 7E-18 2.4E-22 127.2 11.8 80 230-309 12-91 (99)
66 1x4a_A Splicing factor, argini 99.8 1.7E-17 5.7E-22 127.4 14.1 81 229-309 18-101 (109)
67 3s8s_A Histone-lysine N-methyl 99.8 3.5E-18 1.2E-22 130.9 10.1 80 21-100 4-83 (110)
68 2do4_A Squamous cell carcinoma 99.8 1.3E-17 4.3E-22 126.0 12.9 81 229-309 13-98 (100)
69 1whw_A Hypothetical protein ri 99.8 1E-17 3.6E-22 126.2 12.3 80 231-310 6-91 (99)
70 2e5h_A Zinc finger CCHC-type a 99.8 6E-18 2E-22 126.3 10.8 84 15-98 8-91 (94)
71 2do0_A HnRNP M, heterogeneous 99.8 2E-17 6.9E-22 128.1 14.2 81 230-310 12-97 (114)
72 2cqi_A Nucleolysin TIAR; RNA r 99.8 2.1E-17 7.3E-22 125.5 14.0 82 229-310 11-96 (103)
73 2ytc_A PRE-mRNA-splicing facto 99.8 5E-18 1.7E-22 124.2 10.1 76 230-305 9-85 (85)
74 1rk8_A CG8781-PA, CG8781-PA pr 99.8 4.4E-18 1.5E-22 140.8 11.0 130 70-200 11-155 (165)
75 2dnq_A RNA-binding protein 4B; 99.8 9E-18 3.1E-22 124.2 11.4 78 231-310 6-83 (90)
76 2lxi_A RNA-binding protein 10; 99.7 1.7E-18 5.8E-23 128.1 7.2 76 234-309 2-85 (91)
77 2fy1_A RNA-binding motif prote 99.7 9.2E-18 3.1E-22 130.2 11.6 80 231-310 5-89 (116)
78 2cpz_A CUG triplet repeat RNA- 99.7 1.6E-17 5.6E-22 128.8 13.0 86 17-104 19-104 (115)
79 2dgt_A RNA-binding protein 30; 99.7 2E-17 6.9E-22 122.8 12.8 78 230-309 7-84 (92)
80 2lkz_A RNA-binding protein 5; 99.7 1.9E-18 6.4E-23 128.4 7.0 86 16-103 2-93 (95)
81 3md1_A Nuclear and cytoplasmic 99.7 9.6E-18 3.3E-22 122.1 10.7 75 234-308 2-82 (83)
82 3bs9_A Nucleolysin TIA-1 isofo 99.7 8.9E-18 3.1E-22 123.4 10.6 83 114-197 4-86 (87)
83 2do4_A Squamous cell carcinoma 99.7 2.5E-17 8.6E-22 124.3 13.3 87 111-199 12-98 (100)
84 2kxn_B Transformer-2 protein h 99.7 7.7E-18 2.6E-22 133.0 10.9 86 15-100 38-123 (129)
85 2dnz_A Probable RNA-binding pr 99.7 1.7E-17 5.8E-22 124.1 12.2 86 114-200 3-88 (95)
86 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.1E-17 3.9E-22 126.8 11.4 81 230-310 9-95 (102)
87 1whw_A Hypothetical protein ri 99.7 1.7E-17 5.7E-22 125.1 12.2 87 113-200 5-91 (99)
88 1x5u_A Splicing factor 3B subu 99.7 2E-17 7E-22 126.1 12.8 86 16-103 8-93 (105)
89 2d9p_A Polyadenylate-binding p 99.7 1.1E-17 3.8E-22 127.0 11.3 82 229-310 11-96 (103)
90 2dgs_A DAZ-associated protein 99.7 2E-17 6.9E-22 124.6 12.6 87 112-200 6-92 (99)
91 3md1_A Nuclear and cytoplasmic 99.7 1.5E-17 5.2E-22 121.0 11.4 81 117-198 2-82 (83)
92 2jrs_A RNA-binding protein 39; 99.7 1.6E-17 5.3E-22 127.1 12.0 88 110-198 20-107 (108)
93 2cqc_A Arginine/serine-rich sp 99.7 2E-17 7E-22 123.6 12.4 86 110-196 9-94 (95)
94 2cpd_A Apobec-1 stimulating pr 99.7 3.4E-17 1.2E-21 123.4 13.7 79 229-309 11-91 (99)
95 3pgw_S U1-70K; protein-RNA com 99.7 3.7E-18 1.3E-22 162.3 10.3 79 231-309 100-184 (437)
96 2cq0_A Eukaryotic translation 99.7 1.1E-17 3.8E-22 127.0 10.9 86 17-104 9-94 (103)
97 1x5t_A Splicing factor 3B subu 99.7 8.2E-18 2.8E-22 126.1 10.1 79 232-310 4-89 (96)
98 2lea_A Serine/arginine-rich sp 99.7 1.5E-18 5.1E-23 138.4 6.3 119 161-310 6-130 (135)
99 2cqd_A RNA-binding region cont 99.7 4E-17 1.4E-21 126.8 14.2 82 227-309 11-98 (116)
100 1rk8_A CG8781-PA, CG8781-PA pr 99.7 9.2E-18 3.1E-22 138.9 11.1 137 164-310 11-155 (165)
101 2x1f_A MRNA 3'-END-processing 99.7 1.4E-17 4.8E-22 124.7 11.1 85 115-200 1-85 (96)
102 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.1E-17 3.8E-22 122.9 10.3 76 232-307 5-86 (87)
103 1x5u_A Splicing factor 3B subu 99.7 2E-17 6.9E-22 126.1 12.1 90 110-200 9-98 (105)
104 2la4_A Nuclear and cytoplasmic 99.7 5.9E-18 2E-22 128.1 9.0 78 230-307 24-101 (101)
105 1x4h_A RNA-binding protein 28; 99.7 2.8E-17 9.5E-22 126.7 12.9 87 16-104 8-100 (111)
106 2d9p_A Polyadenylate-binding p 99.7 2.5E-17 8.7E-22 125.0 12.5 86 13-100 5-90 (103)
107 2cq0_A Eukaryotic translation 99.7 1.7E-17 5.8E-22 126.0 11.5 90 110-200 9-98 (103)
108 1x5s_A Cold-inducible RNA-bind 99.7 2.9E-17 9.8E-22 124.5 12.7 83 19-101 8-90 (102)
109 2cqc_A Arginine/serine-rich sp 99.7 1.5E-17 5.2E-22 124.3 11.0 84 17-102 9-92 (95)
110 2dnh_A Bruno-like 5, RNA bindi 99.7 1.9E-17 6.6E-22 126.2 11.8 81 231-311 13-101 (105)
111 2cpz_A CUG triplet repeat RNA- 99.7 2E-17 6.9E-22 128.3 12.1 89 111-200 20-108 (115)
112 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.8E-17 6E-22 125.7 11.4 88 112-200 8-95 (102)
113 1x5t_A Splicing factor 3B subu 99.7 1.5E-17 5.3E-22 124.5 10.9 86 114-200 3-89 (96)
114 2dnm_A SRP46 splicing factor; 99.7 1.5E-17 5E-22 126.4 10.9 89 111-200 8-96 (103)
115 2cph_A RNA binding motif prote 99.7 3.5E-17 1.2E-21 125.2 13.0 87 15-103 7-95 (107)
116 2div_A TRNA selenocysteine ass 99.7 1.5E-17 5E-22 125.4 10.7 87 18-104 4-93 (99)
117 2hvz_A Splicing factor, argini 99.7 7.9E-18 2.7E-22 127.4 9.1 77 234-310 1-78 (101)
118 1x4h_A RNA-binding protein 28; 99.7 3.4E-17 1.2E-21 126.1 12.9 89 111-200 10-104 (111)
119 3p5t_L Cleavage and polyadenyl 99.7 4.3E-18 1.5E-22 125.9 7.3 82 117-199 2-85 (90)
120 2cpf_A RNA binding motif prote 99.7 1.7E-17 5.9E-22 124.8 10.7 79 232-310 4-91 (98)
121 1u6f_A Tcubp1, RNA-binding pro 99.7 3.1E-17 1.1E-21 131.8 12.9 82 229-310 38-125 (139)
122 2dgs_A DAZ-associated protein 99.7 4.2E-17 1.4E-21 122.9 12.8 82 18-100 5-86 (99)
123 2dnz_A Probable RNA-binding pr 99.7 4.1E-17 1.4E-21 122.0 12.6 80 21-100 3-82 (95)
124 2cqd_A RNA-binding region cont 99.7 2.8E-17 9.5E-22 127.7 12.1 89 12-103 6-94 (116)
125 2dnp_A RNA-binding protein 14; 99.7 2.8E-17 9.7E-22 121.5 11.6 78 230-309 6-83 (90)
126 1x4f_A Matrin 3; structural ge 99.7 4.1E-18 1.4E-22 129.7 7.1 79 230-308 22-103 (112)
127 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.7E-17 5.9E-22 121.3 10.2 75 231-305 5-85 (85)
128 2jvo_A Nucleolar protein 3; nu 99.7 1.6E-17 5.4E-22 127.0 10.3 80 228-309 26-105 (108)
129 2err_A Ataxin-2-binding protei 99.7 1.5E-17 5.2E-22 127.5 10.3 82 227-308 23-108 (109)
130 1p27_B RNA-binding protein 8A; 99.7 1.9E-17 6.6E-22 126.4 10.8 86 112-198 19-104 (106)
131 3lqv_A PRE-mRNA branch site pr 99.7 6.9E-18 2.4E-22 131.0 8.3 105 113-259 5-109 (115)
132 2cq2_A Hypothetical protein LO 99.7 1.4E-17 4.9E-22 126.7 9.8 78 232-309 24-108 (114)
133 2e5h_A Zinc finger CCHC-type a 99.7 3.5E-17 1.2E-21 122.1 11.8 83 112-195 12-94 (94)
134 2dnh_A Bruno-like 5, RNA bindi 99.7 5.3E-17 1.8E-21 123.7 13.0 88 111-200 10-100 (105)
135 2dnm_A SRP46 splicing factor; 99.7 2.4E-17 8.3E-22 125.1 11.0 84 17-100 7-90 (103)
136 2x1f_A MRNA 3'-END-processing 99.7 2.3E-17 8E-22 123.5 10.7 77 233-309 2-84 (96)
137 2jvr_A Nucleolar protein 3; RN 99.7 1.3E-17 4.5E-22 127.3 9.3 77 232-308 27-106 (111)
138 3ex7_B RNA-binding protein 8A; 99.7 1.4E-17 4.6E-22 131.5 9.8 82 229-310 18-105 (126)
139 3mdf_A Peptidyl-prolyl CIS-tra 99.7 2E-17 6.8E-22 120.9 10.0 82 113-195 4-85 (85)
140 2cph_A RNA binding motif prote 99.7 4.8E-17 1.7E-21 124.4 12.6 90 110-200 9-100 (107)
141 2dh8_A DAZ-associated protein 99.7 2.5E-17 8.4E-22 125.6 10.8 89 13-104 6-94 (105)
142 2div_A TRNA selenocysteine ass 99.7 3.7E-17 1.3E-21 123.2 11.6 85 113-198 6-95 (99)
143 1x5s_A Cold-inducible RNA-bind 99.7 3E-17 1E-21 124.4 11.2 88 112-200 8-95 (102)
144 1wf1_A RNA-binding protein RAL 99.7 2.8E-17 9.7E-22 126.3 11.1 76 232-309 26-102 (110)
145 1x5p_A Negative elongation fac 99.7 9.9E-17 3.4E-21 120.3 13.8 78 231-310 13-90 (97)
146 2do0_A HnRNP M, heterogeneous 99.7 5.9E-17 2E-21 125.5 12.8 82 18-100 10-91 (114)
147 2kxn_B Transformer-2 protein h 99.7 3.1E-17 1.1E-21 129.5 11.2 87 111-198 41-127 (129)
148 4a8x_A RNA-binding protein wit 99.7 3E-17 1E-21 120.8 10.4 77 232-308 3-86 (88)
149 2la6_A RNA-binding protein FUS 99.7 5E-17 1.7E-21 122.4 11.8 83 112-195 9-99 (99)
150 2dgp_A Bruno-like 4, RNA bindi 99.7 5.9E-17 2E-21 123.7 12.4 90 16-105 6-96 (106)
151 2dgp_A Bruno-like 4, RNA bindi 99.7 3.8E-17 1.3E-21 124.8 11.2 89 111-200 8-99 (106)
152 2khc_A Testis-specific RNP-typ 99.7 2.7E-17 9.2E-22 128.2 10.6 81 18-98 35-115 (118)
153 1whx_A Hypothetical protein ri 99.7 1.8E-17 6.1E-22 127.5 9.4 77 232-308 9-85 (111)
154 2cpf_A RNA binding motif prote 99.7 2.6E-17 9E-22 123.8 10.2 86 114-200 3-91 (98)
155 2fy1_A RNA-binding motif prote 99.7 6.7E-17 2.3E-21 125.3 12.7 82 19-101 3-84 (116)
156 3ns6_A Eukaryotic translation 99.7 8.9E-18 3.1E-22 126.7 7.4 83 114-197 4-93 (100)
157 2cqh_A IGF-II mRNA-binding pro 99.7 1.3E-17 4.5E-22 124.1 8.3 79 231-310 6-86 (93)
158 2xnq_A Nuclear polyadenylated 99.7 5.2E-17 1.8E-21 121.6 11.6 78 229-308 18-96 (97)
159 1oo0_B CG8781-PA, drosophila Y 99.7 3.4E-17 1.2E-21 125.9 10.6 87 111-198 21-107 (110)
160 2dhg_A TRNA selenocysteine ass 99.7 4E-17 1.4E-21 124.2 10.8 88 111-200 4-93 (104)
161 2ywk_A Putative RNA-binding pr 99.7 2.3E-17 7.8E-22 123.3 9.2 84 16-102 9-92 (95)
162 2cq3_A RNA-binding protein 9; 99.7 9.7E-17 3.3E-21 121.8 12.8 87 14-104 6-92 (103)
163 3p5t_L Cleavage and polyadenyl 99.7 1E-17 3.5E-22 123.8 7.1 79 24-102 2-82 (90)
164 1p27_B RNA-binding protein 8A; 99.7 6E-17 2.1E-21 123.7 11.7 85 16-100 16-100 (106)
165 2kvi_A Nuclear polyadenylated 99.7 1.4E-17 4.9E-22 124.6 8.0 78 231-310 8-86 (96)
166 2dng_A Eukaryotic translation 99.7 6.5E-17 2.2E-21 122.8 11.7 86 15-104 7-92 (103)
167 1oo0_B CG8781-PA, drosophila Y 99.7 5.5E-17 1.9E-21 124.7 11.4 80 230-309 23-108 (110)
168 2dgv_A HnRNP M, heterogeneous 99.7 2.5E-17 8.4E-22 122.4 9.1 79 231-309 6-88 (92)
169 2hvz_A Splicing factor, argini 99.7 2.1E-17 7.1E-22 125.1 8.8 77 117-199 1-77 (101)
170 2dng_A Eukaryotic translation 99.7 7.6E-17 2.6E-21 122.4 11.9 87 111-200 10-96 (103)
171 1wex_A Hypothetical protein (r 99.7 9.5E-17 3.2E-21 121.3 12.2 83 14-104 6-90 (104)
172 2cpe_A RNA-binding protein EWS 99.7 8E-17 2.7E-21 124.5 12.0 89 111-200 10-106 (113)
173 2la6_A RNA-binding protein FUS 99.7 7.4E-17 2.5E-21 121.5 11.5 83 16-98 6-96 (99)
174 2cpi_A CCR4-NOT transcription 99.7 5.9E-17 2E-21 124.7 11.1 78 231-308 13-102 (111)
175 1wi8_A EIF-4B, eukaryotic tran 99.7 7.6E-17 2.6E-21 122.6 11.5 87 111-200 10-97 (104)
176 1s79_A Lupus LA protein; RRM, 99.7 5E-17 1.7E-21 122.8 10.4 81 113-196 8-88 (103)
177 1sjq_A Polypyrimidine tract-bi 99.7 5.7E-17 1.9E-21 121.5 10.5 82 15-104 8-91 (105)
178 2rs2_A Musashi-1, RNA-binding 99.7 6.8E-17 2.3E-21 123.8 11.3 87 111-199 20-106 (109)
179 3lqv_A PRE-mRNA branch site pr 99.7 2.5E-17 8.7E-22 127.7 8.9 105 20-143 5-109 (115)
180 3s7r_A Heterogeneous nuclear r 99.7 7.9E-17 2.7E-21 118.3 11.0 81 112-194 7-87 (87)
181 2cpe_A RNA-binding protein EWS 99.7 5.8E-17 2E-21 125.3 10.8 88 15-104 7-102 (113)
182 2jrs_A RNA-binding protein 39; 99.7 8.5E-17 2.9E-21 123.0 11.6 83 17-99 20-102 (108)
183 1s79_A Lupus LA protein; RRM, 99.7 7.7E-17 2.6E-21 121.8 11.2 79 19-99 7-85 (103)
184 3q2s_C Cleavage and polyadenyl 99.7 1.3E-17 4.5E-22 145.0 7.8 76 232-307 67-150 (229)
185 2dh8_A DAZ-associated protein 99.7 5.6E-17 1.9E-21 123.6 10.2 89 110-200 10-98 (105)
186 1u6f_A Tcubp1, RNA-binding pro 99.7 9.3E-17 3.2E-21 129.0 11.9 89 111-200 37-125 (139)
187 1wi8_A EIF-4B, eukaryotic tran 99.7 8.9E-17 3E-21 122.2 11.1 83 16-100 8-91 (104)
188 3pgw_S U1-70K; protein-RNA com 99.7 7E-18 2.4E-22 160.4 5.9 159 40-199 9-184 (437)
189 2cqi_A Nucleolysin TIAR; RNA r 99.7 2.3E-16 8E-21 119.7 13.3 88 110-200 9-96 (103)
190 2cqp_A RNA-binding protein 12; 99.7 3.3E-17 1.1E-21 123.2 8.5 81 19-99 11-91 (98)
191 4a8x_A RNA-binding protein wit 99.7 5.8E-17 2E-21 119.3 9.6 83 115-198 3-86 (88)
192 3ucg_A Polyadenylate-binding p 99.7 7.7E-17 2.6E-21 118.9 10.3 80 116-197 6-85 (89)
193 2ywk_A Putative RNA-binding pr 99.7 7.3E-17 2.5E-21 120.6 10.2 84 111-196 11-94 (95)
194 2dhg_A TRNA selenocysteine ass 99.7 2E-16 6.9E-21 120.3 12.8 82 19-103 5-88 (104)
195 2khc_A Testis-specific RNP-typ 99.7 5.3E-17 1.8E-21 126.5 9.7 83 111-194 35-117 (118)
196 3ulh_A THO complex subunit 4; 99.7 1.3E-16 4.4E-21 122.0 11.6 83 111-195 24-106 (107)
197 2dgv_A HnRNP M, heterogeneous 99.7 1.7E-16 5.7E-21 117.9 11.8 81 18-100 3-83 (92)
198 2dgw_A Probable RNA-binding pr 99.7 2.1E-16 7.1E-21 117.1 12.3 83 112-198 6-88 (91)
199 3ns6_A Eukaryotic translation 99.7 3.4E-17 1.2E-21 123.4 8.1 80 21-100 4-90 (100)
200 1p1t_A Cleavage stimulation fa 99.7 4.1E-17 1.4E-21 124.2 8.6 83 17-99 2-84 (104)
201 1p1t_A Cleavage stimulation fa 99.7 3.2E-17 1.1E-21 124.8 8.0 86 114-200 6-91 (104)
202 2ek1_A RNA-binding protein 12; 99.7 1.7E-17 5.7E-22 124.1 6.1 81 19-99 11-91 (95)
203 3n9u_C Cleavage and polyadenyl 99.7 8.8E-17 3E-21 131.1 10.8 82 115-197 54-137 (156)
204 1x4a_A Splicing factor, argini 99.7 2.7E-16 9.4E-21 120.6 13.0 86 14-104 13-98 (109)
205 2cqp_A RNA-binding protein 12; 99.7 7.6E-17 2.6E-21 121.2 9.7 84 113-197 12-95 (98)
206 2dgw_A Probable RNA-binding pr 99.7 1.6E-16 5.4E-21 117.7 11.3 77 231-309 8-89 (91)
207 2a3j_A U1 small nuclear ribonu 99.7 6.1E-17 2.1E-21 126.9 9.4 78 231-308 27-111 (127)
208 2kt5_A RNA and export factor-b 99.7 4E-16 1.4E-20 122.6 14.2 86 112-199 31-116 (124)
209 2hgl_A HNRPF protein, heteroge 99.7 2.9E-17 1E-21 130.2 7.6 82 15-98 36-120 (136)
210 2e5j_A Methenyltetrahydrofolat 99.7 1.5E-16 5.2E-21 119.3 11.1 78 230-308 16-95 (97)
211 1x4d_A Matrin 3; structural ge 99.7 5.8E-17 2E-21 121.5 8.7 78 19-104 11-91 (102)
212 2m2b_A RNA-binding protein 10; 99.7 3.1E-17 1.1E-21 130.2 7.6 88 110-199 17-110 (131)
213 2mss_A Protein (musashi1); RNA 99.7 4.9E-17 1.7E-21 115.8 7.9 75 118-194 1-75 (75)
214 2fc9_A NCL protein; structure 99.7 2.7E-16 9.2E-21 118.9 12.4 78 229-309 11-93 (101)
215 2e5i_A Heterogeneous nuclear r 99.7 2.8E-16 9.6E-21 121.9 12.6 78 232-309 24-104 (124)
216 3ex7_B RNA-binding protein 8A; 99.7 1.1E-16 3.8E-21 126.3 10.6 89 111-200 17-105 (126)
217 2cqg_A TDP-43, TAR DNA-binding 99.7 3.5E-16 1.2E-20 118.7 12.9 88 110-200 9-96 (103)
218 3s7r_A Heterogeneous nuclear r 99.7 7.3E-17 2.5E-21 118.5 8.7 82 16-98 4-85 (87)
219 1x4e_A RNA binding motif, sing 99.7 2.3E-17 7.8E-22 120.6 6.0 81 114-195 3-83 (85)
220 1wez_A HnRNP H', FTP-3, hetero 99.7 1.4E-16 4.7E-21 120.4 10.4 80 18-100 10-89 (102)
221 2dis_A Unnamed protein product 99.7 1.4E-16 4.8E-21 122.3 10.6 79 232-310 7-95 (109)
222 3ucg_A Polyadenylate-binding p 99.7 1.3E-16 4.6E-21 117.6 10.1 74 233-307 6-85 (89)
223 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.6E-16 5.6E-21 127.7 11.2 84 15-98 55-138 (140)
224 1x4e_A RNA binding motif, sing 99.7 3.4E-17 1.2E-21 119.7 6.5 77 20-96 2-78 (85)
225 1h2v_Z 20 kDa nuclear CAP bind 99.7 2.3E-16 7.8E-21 129.3 12.2 87 112-199 35-121 (156)
226 1x4b_A Heterogeneous nuclear r 99.7 1.1E-16 3.6E-21 124.4 9.6 85 114-200 25-109 (116)
227 1wg1_A KIAA1579 protein, homol 99.7 1.1E-16 3.6E-21 117.8 9.1 76 232-308 4-79 (88)
228 2cqg_A TDP-43, TAR DNA-binding 99.7 4.1E-16 1.4E-20 118.3 12.6 85 16-104 8-92 (103)
229 2m2b_A RNA-binding protein 10; 99.7 1.3E-16 4.3E-21 126.7 10.2 84 16-100 16-105 (131)
230 1nu4_A U1A RNA binding domain; 99.7 1.2E-16 4.1E-21 119.9 9.5 79 231-309 6-91 (97)
231 2ek1_A RNA-binding protein 12; 99.7 5.1E-17 1.7E-21 121.5 7.4 82 114-196 13-94 (95)
232 2wbr_A GW182, gawky, LD47780P; 99.7 1.3E-16 4.6E-21 113.8 9.1 73 116-195 7-79 (89)
233 1wg5_A Heterogeneous nuclear r 99.7 3.2E-16 1.1E-20 119.0 11.9 81 18-100 10-91 (104)
234 2dis_A Unnamed protein product 99.7 2.2E-16 7.6E-21 121.1 10.9 87 113-200 5-95 (109)
235 2dgx_A KIAA0430 protein; RRM d 99.7 3.1E-16 1.1E-20 117.2 11.4 81 114-198 7-91 (96)
236 3ulh_A THO complex subunit 4; 99.7 1.7E-16 5.8E-21 121.4 10.1 82 17-99 23-104 (107)
237 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 5.1E-16 1.7E-20 124.9 13.3 84 110-194 57-140 (140)
238 3r27_A HnRNP L, heterogeneous 99.7 1.9E-16 6.6E-21 117.4 9.8 81 111-198 16-98 (100)
239 2cq1_A PTB-like protein L; RRM 99.7 2.4E-16 8.4E-21 118.3 10.5 81 16-104 8-90 (101)
240 2rs2_A Musashi-1, RNA-binding 99.7 1.5E-16 5.2E-21 121.8 9.6 84 17-103 19-102 (109)
241 3zzy_A Polypyrimidine tract-bi 99.7 3.8E-16 1.3E-20 121.6 11.8 80 231-310 26-109 (130)
242 1uaw_A Mouse-musashi-1; RNP-ty 99.7 7.6E-17 2.6E-21 115.4 7.2 76 117-194 1-76 (77)
243 1x4b_A Heterogeneous nuclear r 99.7 2.3E-16 7.8E-21 122.5 10.4 79 231-310 25-109 (116)
244 1x4c_A Splicing factor, argini 99.7 4.9E-16 1.7E-20 118.9 11.9 80 18-104 10-92 (108)
245 2nlw_A Eukaryotic translation 99.7 2.1E-16 7.3E-21 120.2 9.9 77 231-307 13-100 (105)
246 1x5o_A RNA binding motif, sing 99.7 7.6E-16 2.6E-20 119.1 12.9 87 16-103 18-110 (114)
247 2cq4_A RNA binding motif prote 99.7 1.4E-16 4.7E-21 123.4 8.7 82 115-198 24-105 (114)
248 2cpi_A CCR4-NOT transcription 99.7 2.5E-16 8.4E-21 121.2 10.0 86 113-199 12-103 (111)
249 2jwn_A Embryonic polyadenylate 99.7 1.9E-16 6.4E-21 124.6 9.5 77 232-309 35-117 (124)
250 2err_A Ataxin-2-binding protei 99.7 2.6E-16 8.9E-21 120.6 10.0 87 108-197 21-107 (109)
251 2kt5_A RNA and export factor-b 99.7 6.9E-16 2.4E-20 121.2 12.7 81 19-100 31-111 (124)
252 3n9u_C Cleavage and polyadenyl 99.7 1.7E-16 5.9E-21 129.4 9.5 78 22-99 54-133 (156)
253 1wg5_A Heterogeneous nuclear r 99.7 3.6E-16 1.2E-20 118.7 10.7 84 112-198 11-95 (104)
254 2cq4_A RNA binding motif prote 99.7 1.5E-16 5E-21 123.2 8.5 80 19-99 21-100 (114)
255 1x5o_A RNA binding motif, sing 99.7 5.5E-16 1.9E-20 119.9 11.7 85 111-197 20-112 (114)
256 1why_A Hypothetical protein ri 99.7 8.5E-16 2.9E-20 115.2 12.4 83 16-104 10-92 (97)
257 2mss_A Protein (musashi1); RNA 99.7 1.4E-16 4.8E-21 113.4 7.7 73 25-98 1-73 (75)
258 3beg_B Splicing factor, argini 99.7 1.7E-16 5.7E-21 122.9 8.7 75 232-307 15-94 (115)
259 1sjr_A Polypyrimidine tract-bi 99.7 4.1E-16 1.4E-20 126.1 11.1 79 231-309 44-126 (164)
260 2dnn_A RNA-binding protein 12; 99.7 3E-16 1E-20 119.5 9.8 80 114-197 14-93 (109)
261 2ad9_A Polypyrimidine tract-bi 99.7 5E-16 1.7E-20 119.5 11.0 84 110-200 25-110 (119)
262 2cpy_A RNA-binding protein 12; 99.7 3.3E-16 1.1E-20 121.1 10.1 84 112-198 11-95 (114)
263 2cpx_A Hypothetical protein FL 99.7 4.3E-16 1.5E-20 120.7 10.8 81 230-310 22-108 (115)
264 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.1E-16 3.9E-21 114.5 6.9 75 24-99 1-75 (77)
265 2j76_E EIF-4B, EIF4B, eukaryot 99.7 8.4E-17 2.9E-21 121.4 6.5 84 112-198 15-99 (100)
266 2db1_A Heterogeneous nuclear r 99.7 1.5E-16 5.1E-21 123.7 8.1 81 17-99 11-94 (118)
267 2ki2_A SS-DNA binding protein 99.7 5.1E-17 1.8E-21 120.1 5.1 81 117-199 2-82 (90)
268 2e5g_A U6 snRNA-specific termi 99.7 5.6E-16 1.9E-20 115.4 10.8 77 232-309 7-84 (94)
269 2nlw_A Eukaryotic translation 99.7 3.5E-16 1.2E-20 119.0 9.7 84 112-198 11-101 (105)
270 2krb_A Eukaryotic translation 99.7 1.7E-16 6E-21 114.7 7.6 73 23-97 1-80 (81)
271 2fc8_A NCL protein; structure 99.7 6.7E-16 2.3E-20 116.9 11.2 78 229-309 11-94 (102)
272 1wez_A HnRNP H', FTP-3, hetero 99.7 2.2E-16 7.7E-21 119.2 8.3 82 113-198 12-93 (102)
273 1fjc_A Nucleolin RBD2, protein 99.7 7.1E-16 2.4E-20 115.4 10.9 79 230-309 13-93 (96)
274 2hgl_A HNRPF protein, heteroge 99.7 2.6E-16 8.9E-21 124.7 8.9 83 112-197 40-125 (136)
275 2hzc_A Splicing factor U2AF 65 99.7 4.4E-16 1.5E-20 114.3 9.2 71 232-303 5-86 (87)
276 2cpy_A RNA-binding protein 12; 99.7 2.2E-16 7.5E-21 122.1 8.0 79 19-99 11-90 (114)
277 2a3j_A U1 small nuclear ribonu 99.7 6.2E-16 2.1E-20 121.1 10.6 85 111-199 24-112 (127)
278 2j76_E EIF-4B, EIF4B, eukaryot 99.7 2E-16 6.7E-21 119.3 7.5 82 17-100 13-95 (100)
279 2jwn_A Embryonic polyadenylate 99.7 6.3E-16 2.1E-20 121.5 10.7 83 115-199 35-117 (124)
280 2dnn_A RNA-binding protein 12; 99.7 1.8E-16 6.2E-21 120.7 7.2 74 232-307 15-93 (109)
281 2cpj_A Non-POU domain-containi 99.7 1E-15 3.4E-20 115.2 11.2 80 16-103 8-87 (99)
282 2e5j_A Methenyltetrahydrofolat 99.6 1.4E-15 4.9E-20 113.9 12.0 77 19-100 15-91 (97)
283 2bz2_A Negative elongation fac 99.6 4E-16 1.4E-20 121.6 9.2 78 231-310 37-114 (121)
284 2db1_A Heterogeneous nuclear r 99.6 4.4E-16 1.5E-20 121.0 9.3 82 113-197 14-98 (118)
285 2dnq_A RNA-binding protein 4B; 99.6 1.6E-15 5.6E-20 111.9 12.0 76 19-104 4-79 (90)
286 1x4f_A Matrin 3; structural ge 99.6 7E-16 2.4E-20 117.3 10.1 77 19-103 21-100 (112)
287 2hgm_A HNRPF protein, heteroge 99.6 3.2E-16 1.1E-20 122.2 8.4 80 17-99 36-117 (126)
288 2e44_A Insulin-like growth fac 99.6 6.7E-16 2.3E-20 115.5 9.8 78 231-308 13-93 (96)
289 2fc9_A NCL protein; structure 99.6 1.1E-15 3.7E-20 115.5 11.0 84 111-199 10-93 (101)
290 2fc8_A NCL protein; structure 99.6 9.9E-16 3.4E-20 116.0 10.7 87 110-200 9-95 (102)
291 2krb_A Eukaryotic translation 99.6 2.4E-16 8.4E-21 113.9 7.0 73 116-191 1-80 (81)
292 2ki2_A SS-DNA binding protein 99.6 1.7E-16 5.9E-21 117.2 6.3 76 24-100 2-77 (90)
293 1sjr_A Polypyrimidine tract-bi 99.6 1.5E-15 5.1E-20 122.8 12.2 84 19-106 42-125 (164)
294 1wel_A RNA-binding protein 12; 99.6 3.2E-16 1.1E-20 123.1 8.1 80 19-99 21-100 (124)
295 3d2w_A TAR DNA-binding protein 99.6 1E-15 3.5E-20 112.5 9.9 76 230-309 8-86 (89)
296 1iqt_A AUF1, heterogeneous nuc 99.6 2.1E-16 7.1E-21 112.5 6.0 75 118-194 1-75 (75)
297 1wel_A RNA-binding protein 12; 99.6 2.8E-16 9.7E-21 123.4 7.0 84 113-198 22-105 (124)
298 1iqt_A AUF1, heterogeneous nuc 99.6 3.3E-16 1.1E-20 111.4 6.5 74 25-99 1-74 (75)
299 1fj7_A Nucleolin RBD1, protein 99.6 1.2E-16 4E-21 120.9 4.3 85 113-200 14-98 (101)
300 2ytc_A PRE-mRNA-splicing facto 99.6 1.4E-15 4.7E-20 111.1 9.9 78 17-102 6-84 (85)
301 2jvr_A Nucleolar protein 3; RN 99.6 5.7E-16 1.9E-20 118.2 8.0 77 19-99 24-101 (111)
302 2diu_A KIAA0430 protein; struc 99.6 9.3E-16 3.2E-20 110.5 8.6 72 234-309 10-86 (96)
303 2hgn_A Heterogeneous nuclear r 99.6 2.3E-16 7.7E-21 125.5 6.0 80 18-100 41-120 (139)
304 2cpx_A Hypothetical protein FL 99.6 3.8E-16 1.3E-20 121.1 7.2 88 112-200 21-108 (115)
305 2dgu_A Heterogeneous nuclear r 99.6 3.9E-15 1.3E-19 112.8 12.6 80 113-201 8-87 (103)
306 3q2s_C Cleavage and polyadenyl 99.6 6.6E-16 2.3E-20 134.3 9.3 82 115-197 67-150 (229)
307 1fj7_A Nucleolin RBD1, protein 99.6 1.4E-15 4.8E-20 114.9 9.7 78 231-309 15-97 (101)
308 2lmi_A GRSF-1, G-rich sequence 99.6 6.4E-16 2.2E-20 118.0 7.8 80 18-99 6-88 (107)
309 2dgt_A RNA-binding protein 30; 99.6 5.1E-15 1.8E-19 109.7 12.2 82 110-200 4-85 (92)
310 2hgn_A Heterogeneous nuclear r 99.6 2.6E-16 8.8E-21 125.2 5.3 83 113-199 43-125 (139)
311 2j8a_A Histone-lysine N-methyl 99.6 1.2E-15 4.2E-20 116.2 8.7 80 117-197 3-96 (136)
312 2lmi_A GRSF-1, G-rich sequence 99.6 5.4E-16 1.9E-20 118.4 6.7 83 112-197 7-92 (107)
313 2la4_A Nuclear and cytoplasmic 99.6 2E-15 7E-20 114.0 9.8 76 114-196 25-100 (101)
314 1wf0_A TDP-43, TAR DNA-binding 99.6 1.1E-15 3.6E-20 112.4 7.8 76 232-309 4-80 (88)
315 2dha_A FLJ20171 protein; RRM d 99.6 1.1E-15 3.7E-20 119.0 8.1 80 115-197 22-105 (123)
316 2e5i_A Heterogeneous nuclear r 99.6 8.9E-15 3E-19 113.4 13.2 81 20-106 22-103 (124)
317 2lcw_A RNA-binding protein FUS 99.4 4.1E-17 1.4E-21 126.7 0.0 79 231-309 5-97 (116)
318 1nu4_A U1A RNA binding domain; 99.6 1.2E-15 4E-20 114.5 7.6 84 112-199 4-91 (97)
319 2jvo_A Nucleolar protein 3; nu 99.6 3.8E-15 1.3E-19 113.7 10.5 80 111-199 26-105 (108)
320 2xs2_A Deleted in azoospermia- 99.6 1.1E-15 3.6E-20 115.8 7.3 77 231-309 7-88 (102)
321 2dha_A FLJ20171 protein; RRM d 99.6 1.6E-15 5.4E-20 118.0 8.4 77 20-98 20-100 (123)
322 1x4g_A Nucleolysin TIAR; struc 99.6 4.8E-15 1.7E-19 113.6 10.8 80 114-200 23-102 (109)
323 2cpd_A Apobec-1 stimulating pr 99.6 1.4E-14 4.8E-19 108.9 13.1 80 111-199 10-91 (99)
324 2hgm_A HNRPF protein, heteroge 99.6 1.4E-15 4.7E-20 118.6 7.7 81 112-196 38-120 (126)
325 2lcw_A RNA-binding protein FUS 99.4 7E-17 2.4E-21 125.4 0.0 87 113-200 4-98 (116)
326 2e5g_A U6 snRNA-specific termi 99.6 8.3E-15 2.8E-19 109.0 11.3 75 18-98 3-77 (94)
327 2xs2_A Deleted in azoospermia- 99.6 9E-16 3.1E-20 116.2 6.1 82 114-199 7-88 (102)
328 3zzy_A Polypyrimidine tract-bi 99.6 5.5E-15 1.9E-19 115.0 10.6 83 19-106 24-107 (130)
329 3beg_B Splicing factor, argini 99.6 3.7E-15 1.3E-19 115.2 9.4 69 19-94 12-80 (115)
330 2dnp_A RNA-binding protein 14; 99.6 7.8E-15 2.7E-19 108.2 10.8 79 112-199 5-83 (90)
331 2f3j_A RNA and export factor b 99.6 5.5E-15 1.9E-19 123.1 11.0 82 19-101 84-165 (177)
332 3u1l_A PRE-mRNA-splicing facto 99.6 1.4E-15 5E-20 131.3 7.7 79 231-309 132-231 (240)
333 2f3j_A RNA and export factor b 99.6 5.2E-15 1.8E-19 123.3 10.8 85 112-198 84-168 (177)
334 1fjc_A Nucleolin RBD2, protein 99.6 2.2E-15 7.6E-20 112.7 7.7 82 112-199 12-93 (96)
335 2xnq_A Nuclear polyadenylated 99.6 9.2E-15 3.1E-19 109.3 11.0 77 112-197 18-95 (97)
336 3egn_A RNA-binding protein 40; 99.6 2.8E-15 9.6E-20 120.9 8.7 80 230-309 42-132 (143)
337 2cq2_A Hypothetical protein LO 99.6 4E-15 1.4E-19 113.2 8.9 80 19-104 21-105 (114)
338 1wf1_A RNA-binding protein RAL 99.6 9.2E-15 3.2E-19 112.2 10.9 79 112-199 23-102 (110)
339 2kvi_A Nuclear polyadenylated 99.6 6.5E-15 2.2E-19 110.0 9.6 79 112-199 6-85 (96)
340 1whx_A Hypothetical protein ri 99.6 6.4E-15 2.2E-19 113.1 9.6 74 20-99 7-80 (111)
341 2cqh_A IGF-II mRNA-binding pro 99.6 6.7E-15 2.3E-19 109.3 9.3 80 113-200 5-86 (93)
342 2diu_A KIAA0430 protein; struc 99.6 1.9E-14 6.6E-19 103.6 11.2 74 20-103 5-84 (96)
343 2dnl_A Cytoplasmic polyadenyla 99.6 4E-15 1.4E-19 114.9 7.9 66 19-85 4-72 (114)
344 2e44_A Insulin-like growth fac 99.6 1E-14 3.6E-19 109.0 9.8 81 113-198 12-93 (96)
345 1x5p_A Negative elongation fac 99.6 3.4E-14 1.2E-18 106.3 12.1 79 17-105 9-87 (97)
346 1wg1_A KIAA1579 protein, homol 99.6 9.8E-15 3.4E-19 107.2 8.9 76 115-198 4-79 (88)
347 2pe8_A Splicing factor 45; RRM 99.5 3E-14 1E-18 107.7 10.4 75 232-306 7-93 (105)
348 2j8a_A Histone-lysine N-methyl 99.5 5.4E-15 1.9E-19 112.7 6.0 79 24-102 3-95 (136)
349 2dnl_A Cytoplasmic polyadenyla 99.5 1.9E-14 6.4E-19 111.1 8.8 79 114-196 6-87 (114)
350 2hzc_A Splicing factor U2AF 65 99.5 1.6E-14 5.4E-19 105.9 8.0 72 20-98 3-85 (87)
351 3egn_A RNA-binding protein 40; 99.5 2.8E-14 9.4E-19 115.0 9.9 83 113-199 42-132 (143)
352 3d2w_A TAR DNA-binding protein 99.5 3.1E-14 1.1E-18 104.5 9.2 76 113-198 8-85 (89)
353 2pe8_A Splicing factor 45; RRM 99.5 5E-14 1.7E-18 106.5 10.5 82 114-196 6-93 (105)
354 2voo_A Lupus LA protein; RNA-b 99.5 1.6E-13 5.5E-18 116.0 13.0 117 168-306 63-186 (193)
355 2dit_A HIV TAT specific factor 99.5 1.9E-13 6.5E-18 105.0 12.3 79 230-308 12-103 (112)
356 2voo_A Lupus LA protein; RNA-b 99.5 7.2E-14 2.5E-18 118.1 10.3 121 74-197 63-187 (193)
357 1wf0_A TDP-43, TAR DNA-binding 99.5 6E-14 2.1E-18 102.9 7.1 79 114-200 3-81 (88)
358 2bz2_A Negative elongation fac 99.5 2.2E-13 7.5E-18 106.0 10.2 78 113-199 36-113 (121)
359 3v4m_A Splicing factor U2AF 65 99.5 2.1E-13 7.1E-18 103.1 8.9 76 231-306 3-96 (105)
360 2d9o_A DNAJ (HSP40) homolog, s 99.4 2E-12 7E-17 96.3 11.2 75 233-309 10-92 (100)
361 2dit_A HIV TAT specific factor 99.4 2.8E-12 9.7E-17 98.4 12.1 83 112-199 11-104 (112)
362 3u1l_A PRE-mRNA-splicing facto 99.4 5.6E-13 1.9E-17 115.2 8.9 80 20-105 131-229 (240)
363 3tht_A Alkylated DNA repair pr 99.4 6.8E-13 2.3E-17 120.9 9.6 76 230-305 15-97 (345)
364 3v4m_A Splicing factor U2AF 65 99.4 8.7E-13 3E-17 99.7 8.6 82 114-196 3-96 (105)
365 3ue2_A Poly(U)-binding-splicin 99.4 1.2E-12 4.1E-17 100.8 9.1 75 232-306 19-108 (118)
366 3s6e_A RNA-binding protein 39; 99.4 2.1E-12 7.1E-17 98.7 9.8 74 232-305 6-91 (114)
367 1jmt_A Splicing factor U2AF 35 99.4 2.2E-13 7.4E-18 102.9 3.8 67 238-304 20-103 (104)
368 3ue2_A Poly(U)-binding-splicin 99.4 1.8E-12 6E-17 99.9 8.5 81 115-196 19-108 (118)
369 1jmt_A Splicing factor U2AF 35 99.3 1.1E-12 3.7E-17 99.0 3.7 71 28-99 20-102 (104)
370 2d9o_A DNAJ (HSP40) homolog, s 99.3 5.6E-11 1.9E-15 88.5 12.4 66 126-199 27-92 (100)
371 3tht_A Alkylated DNA repair pr 99.2 9.7E-12 3.3E-16 113.3 8.0 78 19-102 14-96 (345)
372 2dnr_A Synaptojanin-1; RRM dom 99.2 3.5E-11 1.2E-15 85.9 9.1 74 231-307 5-86 (91)
373 1owx_A Lupus LA protein, SS-B, 99.2 3.2E-11 1.1E-15 92.1 9.0 75 231-305 16-94 (121)
374 3s6e_A RNA-binding protein 39; 99.2 1.1E-10 3.8E-15 89.1 9.4 78 115-197 6-93 (114)
375 1ufw_A Synaptojanin 2; RNP dom 99.1 3.3E-10 1.1E-14 81.1 8.0 75 228-305 10-93 (95)
376 1owx_A Lupus LA protein, SS-B, 99.1 6E-10 2E-14 85.1 9.5 79 15-99 10-92 (121)
377 2l9w_A U4/U6 snRNA-associated- 98.9 8.3E-09 2.8E-13 75.2 9.4 72 232-303 20-96 (117)
378 2dnr_A Synaptojanin-1; RRM dom 98.8 1.2E-08 4.1E-13 72.8 7.7 74 114-197 5-86 (91)
379 3dxb_A Thioredoxin N-terminall 98.7 1.3E-08 4.4E-13 88.0 6.8 61 246-306 142-212 (222)
380 3dxb_A Thioredoxin N-terminall 98.7 2.9E-08 9.8E-13 85.8 8.5 68 128-196 141-212 (222)
381 1ufw_A Synaptojanin 2; RNP dom 98.6 8.1E-08 2.8E-12 68.8 6.4 72 114-195 13-93 (95)
382 2l9w_A U4/U6 snRNA-associated- 98.4 3.9E-06 1.3E-10 61.3 9.9 73 114-193 19-96 (117)
383 1wey_A Calcipressin 1; structu 98.3 7.7E-06 2.6E-10 59.6 10.3 76 233-308 5-85 (104)
384 2dhx_A Poly (ADP-ribose) polym 98.3 6.9E-06 2.4E-10 59.5 9.9 89 21-129 6-99 (104)
385 2dhx_A Poly (ADP-ribose) polym 98.2 2.5E-05 8.5E-10 56.7 11.1 76 114-198 6-85 (104)
386 1whv_A Poly(A)-specific ribonu 97.9 6.9E-05 2.3E-09 53.6 8.8 60 18-86 11-70 (100)
387 1uw4_A UPF3X; nonsense mediate 97.9 3.3E-05 1.1E-09 55.4 6.9 69 24-92 2-72 (91)
388 1wey_A Calcipressin 1; structu 97.6 0.00018 6.1E-09 52.4 6.8 71 23-99 5-80 (104)
389 1uw4_A UPF3X; nonsense mediate 97.5 0.00079 2.7E-08 48.2 9.0 74 234-307 2-88 (91)
390 1wwh_A Nucleoporin 35, nucleop 97.4 0.0007 2.4E-08 50.8 7.9 73 231-305 22-95 (119)
391 3ctr_A Poly(A)-specific ribonu 97.3 0.00028 9.6E-09 50.6 4.6 55 23-86 6-60 (101)
392 2l08_A Regulator of nonsense t 97.3 0.00018 6.2E-09 51.8 3.6 71 22-92 8-80 (97)
393 1whv_A Poly(A)-specific ribonu 97.2 0.0022 7.4E-08 45.9 8.0 56 232-290 15-70 (100)
394 1wwh_A Nucleoporin 35, nucleop 97.0 0.0025 8.5E-08 47.8 7.1 66 19-92 20-85 (119)
395 3ctr_A Poly(A)-specific ribonu 96.9 0.0015 5E-08 46.9 5.3 54 234-290 7-60 (101)
396 2l08_A Regulator of nonsense t 96.6 0.0041 1.4E-07 44.7 6.0 73 233-305 9-94 (97)
397 3p3d_A Nucleoporin 53; structu 96.3 0.0046 1.6E-07 47.0 4.8 71 233-305 7-97 (132)
398 3pq1_A Poly(A) RNA polymerase; 96.3 0.0022 7.4E-08 60.5 3.3 56 22-83 52-107 (464)
399 3pq1_A Poly(A) RNA polymerase; 96.1 0.0035 1.2E-07 59.0 3.7 55 233-288 53-108 (464)
400 3p3d_A Nucleoporin 53; structu 94.7 0.057 1.9E-06 41.0 5.5 77 116-195 7-97 (132)
401 3d45_A Poly(A)-specific ribonu 91.5 0.61 2.1E-05 44.8 8.7 57 22-87 439-495 (507)
402 3d45_A Poly(A)-specific ribonu 86.9 2.1 7.1E-05 41.0 8.5 56 232-290 439-494 (507)
403 4eyt_A Telomerase associated p 70.4 24 0.00081 24.4 9.0 68 233-302 12-86 (129)
404 4eyt_A Telomerase associated p 65.7 30 0.001 23.9 8.3 63 17-87 6-68 (129)
405 2g0c_A ATP-dependent RNA helic 59.8 8.9 0.00031 25.7 3.5 59 244-305 12-75 (76)
406 3fry_A Probable copper-exporti 40.3 71 0.0024 20.4 5.8 55 234-289 7-61 (73)
407 1xn9_A 30S ribosomal protein S 37.0 22 0.00074 25.6 2.5 48 126-174 28-79 (101)
408 2v94_A RPS24, 30S ribosomal pr 36.9 24 0.00082 25.6 2.8 47 126-173 37-87 (107)
409 4e8u_A Putative uncharacterize 33.5 72 0.0025 25.3 5.3 48 25-75 14-72 (172)
410 2g1d_A 30S ribosomal protein S 33.0 22 0.00075 25.4 2.0 52 126-177 29-82 (98)
411 1ywx_A 30S ribosomal protein S 32.2 22 0.00076 25.5 1.9 47 126-173 28-78 (102)
412 2xzm_P RPS24E; ribosome, trans 28.3 48 0.0016 25.5 3.3 47 126-173 31-81 (149)
413 3ts2_A Protein LIN-28 homolog 27.8 12 0.00042 29.0 -0.1 28 248-277 2-29 (148)
414 2cu1_A Mitogen-activated prote 27.6 1.7E+02 0.0057 20.8 5.9 68 238-308 21-89 (103)
415 3u5c_Y RP50, 40S ribosomal pro 27.2 44 0.0015 25.3 2.9 47 126-173 33-83 (135)
416 3fry_A Probable copper-exporti 24.5 1.4E+02 0.0048 18.9 5.9 55 23-84 6-60 (73)
417 4a4j_A Pacszia, cation-transpo 24.3 1.3E+02 0.0045 18.5 5.5 46 234-279 4-49 (69)
418 2ki0_A DS119; beta-alpha-beta, 23.9 25 0.00084 18.7 0.7 19 22-45 4-22 (36)
419 2cu1_A Mitogen-activated prote 23.3 2E+02 0.007 20.4 6.1 65 30-103 23-88 (103)
420 3lpe_A Putative transcription 22.3 2E+02 0.0068 19.9 9.0 24 158-181 49-72 (92)
421 3h7h_B Transcription elongatio 20.2 1.1E+02 0.0037 22.1 3.7 34 49-87 40-73 (106)
422 2lfv_A Protein DAMX; cell divi 25.3 22 0.00076 25.8 0.0 60 24-87 26-86 (106)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=9.2e-46 Score=336.64 Aligned_cols=241 Identities=18% Similarity=0.305 Sum_probs=217.0
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeeee
Q 016188 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLN 100 (394)
Q Consensus 21 ~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~~ 100 (394)
+++++|||+|||+++++++|+++|+.|| |.+|++ ++++|||||+|.+.++|.+|++.|++..+.++.+.+.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~-- 90 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQ-- 90 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEE--
Confidence 4568999999999999999999999999 999988 3357999999999999999999999999998655554
Q ss_pred cccCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhC
Q 016188 101 WASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMN 180 (394)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~ 180 (394)
++. ..++|||+|||+++++++|+++| +.||.|..+.++.++.+|+++|+|||+|.+.++|.+|++.++
T Consensus 91 ~~~-----------~~~~l~v~nlp~~~t~~~l~~~f-~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 158 (284)
T 3smz_A 91 LQP-----------TDALLCVANLPPSLTQQQFEELV-RPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLL 158 (284)
T ss_dssp ECC-----------CSCEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred ecC-----------CCCEEEEcCCCCcCCHHHHHHHH-HhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 432 35799999999999999999999 899999999999999899999999999999999999999999
Q ss_pred CeeecCcceEEeecCCCCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCC-CHHHHHHHhcccCC
Q 016188 181 GVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNV-TEEELKQTFLHFGE 259 (394)
Q Consensus 181 ~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~-t~~~l~~~F~~~G~ 259 (394)
+..+.|+.|.|.++.+.... ......++|||+|||..+ ++++|+++|+.||.
T Consensus 159 ~~~~~g~~i~v~~a~~~~~~---------------------------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~ 211 (284)
T 3smz_A 159 GKPLGPRTLYVHWTDAGQLT---------------------------PALLHSRCLCVDRLPPGFNDVDALCRALSAVHS 211 (284)
T ss_dssp TCEETTEECEEEECCGGGCC---------------------------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSC
T ss_pred CCEeCCcEEEEEECCCCCCC---------------------------cccCCccEEEEecCCcccCCHHHHHHHhhCCCC
Confidence 99999999999998654321 112346899999999995 99999999999999
Q ss_pred eEEEEEeCC-----CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccCCC
Q 016188 260 IVNVKIPMG-----RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDV 309 (394)
Q Consensus 260 i~~~~i~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 309 (394)
|.++.|..+ +|+|||+|.+.++|.+|+..|||..|+|+.|+|+|++++..
T Consensus 212 i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 212 PTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp CSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred eEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 999999876 79999999999999999999999999999999999987654
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=4.8e-45 Score=333.23 Aligned_cols=248 Identities=17% Similarity=0.338 Sum_probs=208.1
Q ss_pred CCCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccce
Q 016188 17 PMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQN 96 (394)
Q Consensus 17 ~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~ 96 (394)
....++.++|||+|||+++++++|+++|+.||.|.+|+++++.. + ++|||||+|.+.++|.+|++ +++..+.++.+.
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~-~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~ 111 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLK-K-NFRFARIEFARYDGALAAIT-KTHKVVGQNEII 111 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTT-S-SSEEEEEEESSHHHHHHHHT-TTTCEETTEECE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-C-CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEE
Confidence 44667789999999999999999999999999999999999872 2 57999999999999999995 899999985544
Q ss_pred eeeecccCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCC-CeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHH
Q 016188 97 FRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYP-SVRGAKVVTDPNTGRSKGYGFVKFLDENERNRA 175 (394)
Q Consensus 97 v~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G-~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~a 175 (394)
+ .++ ..++|||+|||+++++++|+++| +.|| .|..+.++.++. +.++|||||+|.+.++|..|
T Consensus 112 v--~~~------------~~~~l~v~nlp~~~t~~~l~~~f-~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A 175 (292)
T 2ghp_A 112 V--SHL------------TECTLWMTNFPPSYTQRNIRDLL-QDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYC 175 (292)
T ss_dssp E--EEC------------CSCEEEEECCCTTCCHHHHHHHH-HHTTCCCCEEECC--------CCEEEEECSSHHHHHHH
T ss_pred E--EEC------------CCCEEEEECCCCCCCHHHHHHHH-HHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHH
Confidence 4 443 37899999999999999999999 8999 999999998876 88999999999999999999
Q ss_pred HHhhCCeeecCcceEEeecCCCCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCC-CCHHHHHHHh
Q 016188 176 MTEMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPN-VTEEELKQTF 254 (394)
Q Consensus 176 i~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~-~t~~~l~~~F 254 (394)
++.|++..+.|+.|.|.++.+....... .......++|||+|||.. +++++|+++|
T Consensus 176 ~~~l~g~~~~g~~l~v~~a~~~~~~~~~-----------------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F 232 (292)
T 2ghp_A 176 VEKLNGLKIEGYTLVTKVSNPLEKSKRT-----------------------DSATLEGREIMIRNLSTELLDENLLRESF 232 (292)
T ss_dssp HHHHTTCEETTEECEEEECCCC--------------------------------CCTTTEEEEEEECTTTCCHHHHHHHH
T ss_pred HHHhCCCEeCCcEEEEEECCCCcccccc-----------------------cccCCCCceEEEECCCcccCCHHHHHHHH
Confidence 9999999999999999998766443211 112345689999999999 9999999999
Q ss_pred cccCCeEEEEEeCC-------CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccC
Q 016188 255 LHFGEIVNVKIPMG-------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307 (394)
Q Consensus 255 ~~~G~i~~~~i~~~-------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 307 (394)
++||.|.++.++.+ +|+|||+|.+.++|.+|+ .|||..|+|+.|+|.|++++
T Consensus 233 ~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 233 EGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp GGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred hccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 99999999999764 689999999999999999 99999999999999999876
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=4.3e-35 Score=254.46 Aligned_cols=167 Identities=32% Similarity=0.525 Sum_probs=150.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEe
Q 016188 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRIS 192 (394)
Q Consensus 113 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~ 192 (394)
..+.++|||+|||+++|+++|+++| +.||+|.+|+|++++.+++++|||||+|.+.++|.+|++.+++..+.|+.|.+.
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F-~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~ 90 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKF-SPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 90 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHH-HhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccc
Confidence 4467899999999999999999999 899999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC----
Q 016188 193 AATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG---- 268 (394)
Q Consensus 193 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~---- 268 (394)
++....... ....++|||+|||..+|+++|+++|++||.|.++.|+.+
T Consensus 91 ~~~~~~~~~----------------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~ 142 (213)
T 4f02_A 91 WSQRDPSLR----------------------------KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS 142 (213)
T ss_dssp ECCCCTHHH----------------------------HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEE
T ss_pred ccccccccc----------------------------ccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCC
Confidence 886543221 112368999999999999999999999999999999864
Q ss_pred CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccCC
Q 016188 269 RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308 (394)
Q Consensus 269 ~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 308 (394)
+|||||+|.+.++|.+|++.|||..|+|+.|+|.+++++.
T Consensus 143 ~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 143 KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 182 (213)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCHH
T ss_pred ceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCc
Confidence 6899999999999999999999999999999999998654
No 4
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=9.1e-34 Score=246.11 Aligned_cols=172 Identities=30% Similarity=0.490 Sum_probs=149.5
Q ss_pred cCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeee
Q 016188 20 LEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRL 99 (394)
Q Consensus 20 ~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~ 99 (394)
..+.++|||+|||+++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|.+|++.+++..+.++.+.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~-- 89 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI-- 89 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE--
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccc--
Confidence 456789999999999999999999999999999999999989999999999999999999999999999999865544
Q ss_pred ecccCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhh
Q 016188 100 NWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEM 179 (394)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l 179 (394)
.++.... ........+|||+|||+++++++|+++| +.||.|..++|+.+. +.++|||||+|.+.++|.+|++.|
T Consensus 90 ~~~~~~~---~~~~~~~~~l~v~nl~~~~t~~~l~~~F-~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~l 163 (213)
T 4f02_A 90 MWSQRDP---SLRKSGVGNIFIKNLDKSIDNKALYDTF-SAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 163 (213)
T ss_dssp EECCCCT---HHHHHCTTEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccccc---cccccccccceECCcccccHHHHHHHHH-hhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHh
Confidence 4432211 1112235689999999999999999999 899999999999985 458999999999999999999999
Q ss_pred CCeeecCcceEEeecCCCCC
Q 016188 180 NGVFCSTRPMRISAATPKKT 199 (394)
Q Consensus 180 ~~~~~~g~~l~v~~a~~~~~ 199 (394)
|+..+.|+.|.|.++.++..
T Consensus 164 ng~~~~g~~i~V~~a~~~~~ 183 (213)
T 4f02_A 164 NGMLLNDRKVFVGRFKSRKE 183 (213)
T ss_dssp TTCEETTEECEEEECCCHHH
T ss_pred CCCEECCEEEEEEEcCCCcc
Confidence 99999999999999976543
No 5
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=7.3e-33 Score=237.47 Aligned_cols=173 Identities=24% Similarity=0.440 Sum_probs=147.0
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceE
Q 016188 111 PDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190 (394)
Q Consensus 111 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~ 190 (394)
......++|||+|||+++++++|+++| +.||.|.+|.++.++.+|+++|||||+|.+.++|..|++. ++..+.|+.|.
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~ 85 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHF-EQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVE 85 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHH-HhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEee
Confidence 345568899999999999999999999 8999999999999999999999999999999999999965 88999999999
Q ss_pred EeecCCCCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC--
Q 016188 191 ISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG-- 268 (394)
Q Consensus 191 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~-- 268 (394)
|.++........ .......++|||+|||..+|+++|+++|+.||.|.++.+..+
T Consensus 86 v~~~~~~~~~~~------------------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 141 (196)
T 1l3k_A 86 PKRAVSREDSQR------------------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRG 141 (196)
T ss_dssp EEECCC-----------------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTT
T ss_pred eecccCcccccc------------------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCC
Confidence 999876543211 112234589999999999999999999999999999999865
Q ss_pred ----CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccCCCC
Q 016188 269 ----RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVT 310 (394)
Q Consensus 269 ----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~ 310 (394)
+|+|||+|.+.++|.+|+.. ++..|+|+.|+|.++.++...
T Consensus 142 ~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 142 SGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC-----
T ss_pred CCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHh
Confidence 68999999999999999977 799999999999999987654
No 6
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-33 Score=230.61 Aligned_cols=165 Identities=34% Similarity=0.584 Sum_probs=149.3
Q ss_pred ceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeeeeccc
Q 016188 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWAS 103 (394)
Q Consensus 24 ~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~~~~~ 103 (394)
|+|||+|||+++++++|+++|++||.|.+|++++++ +++++|||||+|.+.++|.+|++.|++..+.++.+.+ .++.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v--~~~~ 77 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKI--NWAF 77 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE--EECC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEE--EEcC
Confidence 689999999999999999999999999999999997 6889999999999999999999999999999855544 4443
Q ss_pred CCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCee
Q 016188 104 FGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVF 183 (394)
Q Consensus 104 ~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~ 183 (394)
.. ......+.++|||+|||.++++++|+++| +.||.|..+.++.++.+|.++|+|||+|.+.++|.+|++.|++..
T Consensus 78 ~~---~~~~~~~~~~l~v~nl~~~~t~~~l~~~f-~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 153 (166)
T 3md3_A 78 QS---QQSSSDDTFNLFVGDLNVNVDDETLRNAF-KDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD 153 (166)
T ss_dssp CC---CCCCCTTCEEEEEESCCTTCCHHHHHHHH-TTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred CC---CCCCCCCCceEEECCCCCCCCHHHHHHHH-hccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc
Confidence 32 12344567899999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred ecCcceEEeecC
Q 016188 184 CSTRPMRISAAT 195 (394)
Q Consensus 184 ~~g~~l~v~~a~ 195 (394)
+.|+.|.|.++.
T Consensus 154 ~~g~~i~v~~a~ 165 (166)
T 3md3_A 154 LNGRPLRINWAA 165 (166)
T ss_dssp ETTEECEEEESC
T ss_pred cCCcEEEEEecC
Confidence 999999999985
No 7
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=1.2e-32 Score=236.22 Aligned_cols=181 Identities=20% Similarity=0.383 Sum_probs=150.4
Q ss_pred CCCCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccc
Q 016188 16 HPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQ 95 (394)
Q Consensus 16 ~~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~ 95 (394)
.+..+++.++|||+|||+++++++|+++|++||.|.+|++++++.+|+++|||||+|.+.++|.+|++. ++..+.++.+
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l 84 (196)
T 1l3k_A 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVV 84 (196)
T ss_dssp --CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEe
Confidence 345677889999999999999999999999999999999999998899999999999999999999976 8888888655
Q ss_pred eeeeecccCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHH
Q 016188 96 NFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRA 175 (394)
Q Consensus 96 ~v~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~a 175 (394)
.+........ ........+.++|||+|||+++++++|+++| +.||.|..+.++.++.+|+++|||||+|.+.++|.+|
T Consensus 85 ~v~~~~~~~~-~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A 162 (196)
T 1l3k_A 85 EPKRAVSRED-SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF-EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI 162 (196)
T ss_dssp EEEECCC------------CCSEEEEECCTTTCCHHHHHHHH-TTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred eeecccCccc-ccccccCCCcceEEEeCCCCCCCHHHHHHHH-hcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHH
Confidence 5544332211 1112233456899999999999999999999 8999999999999998999999999999999999999
Q ss_pred HHhhCCeeecCcceEEeecCCCCCc
Q 016188 176 MTEMNGVFCSTRPMRISAATPKKTT 200 (394)
Q Consensus 176 i~~l~~~~~~g~~l~v~~a~~~~~~ 200 (394)
++. ++..+.|+.|.|.++.++...
T Consensus 163 ~~~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 163 VIQ-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp HHC-SCCEETTEECEEEECC-----
T ss_pred HHh-CCcEECCEEEEEEecCChhHh
Confidence 976 799999999999999887654
No 8
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=1.3e-33 Score=245.89 Aligned_cols=178 Identities=23% Similarity=0.408 Sum_probs=153.7
Q ss_pred CcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceee
Q 016188 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (394)
Q Consensus 19 ~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~ 98 (394)
..++.++|||+|||+++++++|+++|++||.|.+|+++++..+++++|||||+|.+.++|.+|++.|++..+.++.+.+
T Consensus 24 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v- 102 (216)
T 2qfj_A 24 ALAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV- 102 (216)
T ss_dssp HHHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEE-
T ss_pred ccCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEE-
Confidence 4556789999999999999999999999999999999999888999999999999999999999999999999966555
Q ss_pred eecccCCCCCC------CCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHH
Q 016188 99 LNWASFGIGEK------RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENER 172 (394)
Q Consensus 99 ~~~~~~~~~~~------~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a 172 (394)
.++....... .......++|||+|||.++++++|+++| +.||.|..+.++.++.+|+++|+|||+|.+.++|
T Consensus 103 -~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f-~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A 180 (216)
T 2qfj_A 103 -GRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVF-EAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSS 180 (216)
T ss_dssp -ECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHH-TTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred -ecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHH-hccCCeeEEEEEecCCCCCcCceEEEEecCHHHH
Confidence 3332211000 0012456899999999999999999999 8999999999999998999999999999999999
Q ss_pred HHHHHhhCCeeecCcceEEeecCCCCC
Q 016188 173 NRAMTEMNGVFCSTRPMRISAATPKKT 199 (394)
Q Consensus 173 ~~ai~~l~~~~~~g~~l~v~~a~~~~~ 199 (394)
.+|++.|++..+.|+.|.|.++.++..
T Consensus 181 ~~A~~~l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 181 QDAVSSMNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp HHHHHHHTTCBCSSSBCEEEECSSCSS
T ss_pred HHHHHHccCCEeCCcEEEEEEecCCCC
Confidence 999999999999999999999987644
No 9
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=2.4e-32 Score=228.28 Aligned_cols=165 Identities=25% Similarity=0.468 Sum_probs=150.1
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeeeec
Q 016188 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNW 101 (394)
Q Consensus 22 ~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~~~ 101 (394)
+.++|||+|||+++++++|+++|++||.|.+|++++++.+|+++|||||+|.+.++|.+|++.|++..+.++. +.+.+
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~--l~v~~ 79 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKR--LKVSY 79 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEE--CEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcE--EEEEe
Confidence 4689999999999999999999999999999999999888999999999999999999999999999998854 55555
Q ss_pred ccCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCC
Q 016188 102 ASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNG 181 (394)
Q Consensus 102 ~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~ 181 (394)
+... ....+.++|+|+|||.++++++|+++| +.||.|..+.++.+..+++++|+|||+|.+.++|.+|++.|++
T Consensus 80 ~~~~-----~~~~~~~~l~v~nl~~~~t~~~l~~~f-~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 153 (168)
T 1b7f_A 80 ARPG-----GESIKDTNLYVTNLPRTITDDQLDTIF-GKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNN 153 (168)
T ss_dssp CCCC-----SSTTTTCEEEEESCCTTCCHHHHHHHH-TSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred cCCC-----cccCCCCCEEEeCCCCCCCHHHHHHhh-hcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcC
Confidence 5432 223457899999999999999999999 8999999999999988899999999999999999999999999
Q ss_pred eeecC--cceEEeec
Q 016188 182 VFCST--RPMRISAA 194 (394)
Q Consensus 182 ~~~~g--~~l~v~~a 194 (394)
..+.| ++|.|.+|
T Consensus 154 ~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 154 VIPEGGSQPLSVRLA 168 (168)
T ss_dssp CCCTTCSSCCEEEEC
T ss_pred CEecCCCeEEEEEeC
Confidence 99977 99999875
No 10
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=3.1e-32 Score=227.32 Aligned_cols=164 Identities=29% Similarity=0.467 Sum_probs=148.1
Q ss_pred cceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeeeecc
Q 016188 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWA 102 (394)
Q Consensus 23 ~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~~~~ 102 (394)
+++|||+|||+++++++|+++|++||.|.+|++++++.+|+++|||||+|.+.++|.+|++.|++..+.++.+.+ .++
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v--~~~ 79 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV--SYA 79 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE--EEC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEE--Eec
Confidence 589999999999999999999999999999999999889999999999999999999999999999999855544 444
Q ss_pred cCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCe
Q 016188 103 SFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGV 182 (394)
Q Consensus 103 ~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~ 182 (394)
... ......++|+|+|||.++++++|+++| +.||.|..+.++.+..+|+++|+|||+|.+.++|.+|++.|++.
T Consensus 80 ~~~-----~~~~~~~~l~v~nl~~~~t~~~l~~~f-~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 153 (167)
T 1fxl_A 80 RPS-----SASIRDANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 153 (167)
T ss_dssp CCC-----CGGGTTCEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCC-----cccCCCCcEEECCCCCcCCHHHHHHHH-HhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCC
Confidence 322 223456889999999999999999999 89999999999999888999999999999999999999999999
Q ss_pred eecCcc--eEEeec
Q 016188 183 FCSTRP--MRISAA 194 (394)
Q Consensus 183 ~~~g~~--l~v~~a 194 (394)
.+.|+. |.|.+|
T Consensus 154 ~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 154 KPSGATEPITVKFA 167 (167)
T ss_dssp CCTTCSSCCEEEEC
T ss_pred ccCCCccceEEEeC
Confidence 999975 777765
No 11
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=2.9e-32 Score=227.75 Aligned_cols=159 Identities=29% Similarity=0.504 Sum_probs=147.7
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeec
Q 016188 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (394)
Q Consensus 115 ~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a 194 (394)
++++|||+|||+++++++|+++| +.||.|.++.++.++.+|+++|+|||+|.+.++|..|++.+++..+.|+.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALF-RAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHH-HTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHH-HhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEec
Confidence 47899999999999999999999 89999999999999989999999999999999999999999999999999999998
Q ss_pred CCCCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------
Q 016188 195 TPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------ 268 (394)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~------ 268 (394)
.+.... ...++|||+|||..+++++|+++|++||.|.++.+..+
T Consensus 81 ~~~~~~------------------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~ 130 (168)
T 1b7f_A 81 RPGGES------------------------------IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRP 130 (168)
T ss_dssp CCCSST------------------------------TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCE
T ss_pred CCCccc------------------------------CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCc
Confidence 755321 23588999999999999999999999999999999875
Q ss_pred CcEEEEEeCchHHHHHHHHHhCCceeCc--EEEEEEEc
Q 016188 269 RGCGFVQFAARASAEEAILRMQGHMIGQ--QQVRISWG 304 (394)
Q Consensus 269 ~g~~fV~f~~~~~a~~a~~~l~g~~~~g--~~l~v~~a 304 (394)
+|+|||+|.+.++|.+|+..|||..+.| ++|+|+||
T Consensus 131 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 131 RGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred ceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 4899999999999999999999999987 99999986
No 12
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-32 Score=226.20 Aligned_cols=160 Identities=27% Similarity=0.517 Sum_probs=146.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeecCC
Q 016188 117 HSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATP 196 (394)
Q Consensus 117 ~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a~~ 196 (394)
++|||+|||+++++++|+++| +.||.|.++.++.++. ++++|+|||+|.+.++|..|++.+++..+.|+.|.|.++..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f-~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYF-QVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHH-GGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHH-HhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 589999999999999999999 8999999999999875 78999999999999999999999999999999999999866
Q ss_pred CCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------Cc
Q 016188 197 KKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RG 270 (394)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~------~g 270 (394)
.... .....++|||+|||..+++++|+++|++||.|.++.+..+ +|
T Consensus 79 ~~~~----------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g 130 (166)
T 3md3_A 79 SQQS----------------------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRG 130 (166)
T ss_dssp CCCC----------------------------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEE
T ss_pred CCCC----------------------------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcce
Confidence 5431 1234589999999999999999999999999999999865 68
Q ss_pred EEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEccc
Q 016188 271 CGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRK 306 (394)
Q Consensus 271 ~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 306 (394)
+|||+|.+.++|.+|+..|||..++|+.|+|+||++
T Consensus 131 ~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 131 YGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred EEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 999999999999999999999999999999999863
No 13
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=1.8e-32 Score=238.81 Aligned_cols=176 Identities=18% Similarity=0.371 Sum_probs=151.0
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeec
Q 016188 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (394)
Q Consensus 115 ~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a 194 (394)
+.++|||+|||+++++++|+++| +.||.|.+|.++.++.+++++|||||+|.+.++|.+|++.+++..+.|+.|.|.++
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAF-APFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHH-GGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred cCCEEEEECCCCCCCHHHHHHHH-HhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 36789999999999999999999 89999999999999889999999999999999999999999999999999999887
Q ss_pred CCCCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------
Q 016188 195 TPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------ 268 (394)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~------ 268 (394)
............ ........++|||+|||..+++++|+++|++||.|.++.+..+
T Consensus 106 ~~~~~~~~~~~~-------------------~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~ 166 (216)
T 2qfj_A 106 SNIGQAQPIIDQ-------------------LAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKH 166 (216)
T ss_dssp SCCGGGHHHHHH-------------------HHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCE
T ss_pred CCccccchhhhh-------------------hhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCc
Confidence 655432110000 0011234589999999999999999999999999999999876
Q ss_pred CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccCCCC
Q 016188 269 RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVT 310 (394)
Q Consensus 269 ~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~ 310 (394)
+|+|||+|.+.++|.+|+..|||..|+|+.|+|.+++++...
T Consensus 167 ~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 167 KGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSST
T ss_pred CceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCCC
Confidence 689999999999999999999999999999999999977543
No 14
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=6.4e-32 Score=225.37 Aligned_cols=159 Identities=29% Similarity=0.583 Sum_probs=146.3
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeec
Q 016188 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (394)
Q Consensus 115 ~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a 194 (394)
++++|||+|||+++++++|+++| +.||.|.++.++.++.+|+++|+|||+|.+.++|..|++.+++..+.|+.|.|.++
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f-~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 79 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLF-GSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 79 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHH-HTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CcceEEEcCCCCCCCHHHHHHHH-HhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEec
Confidence 36899999999999999999999 89999999999999989999999999999999999999999999999999999998
Q ss_pred CCCCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------
Q 016188 195 TPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------ 268 (394)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~------ 268 (394)
.+.... ...++|||+|||..+++++|+++|++||.|.++.+..+
T Consensus 80 ~~~~~~------------------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~ 129 (167)
T 1fxl_A 80 RPSSAS------------------------------IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVS 129 (167)
T ss_dssp CCCCGG------------------------------GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCE
T ss_pred CCCccc------------------------------CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCc
Confidence 754321 13478999999999999999999999999999999765
Q ss_pred CcEEEEEeCchHHHHHHHHHhCCceeCcEE--EEEEEc
Q 016188 269 RGCGFVQFAARASAEEAILRMQGHMIGQQQ--VRISWG 304 (394)
Q Consensus 269 ~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~--l~v~~a 304 (394)
+|+|||+|.+.++|.+|++.|||..++|+. |+|+||
T Consensus 130 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 130 RGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred cceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 589999999999999999999999999975 888876
No 15
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=8.7e-32 Score=226.40 Aligned_cols=168 Identities=21% Similarity=0.390 Sum_probs=148.6
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCC--CCcceEEEEEcCHHHHHHHHHHcCCCCCC-Cccceee
Q 016188 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITG--QPEGYGFVEFVSHAAAERVLQTYNGTPMP-GTEQNFR 98 (394)
Q Consensus 22 ~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g--~~~g~afV~f~~~e~A~~a~~~l~~~~~~-~~~~~v~ 98 (394)
+.++|||+|||+++++++|+++|++||+|.+|+++++..++ +++|||||+|.+.++|.+|++.|++..+. +....+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 67899999999999999999999999999999999998766 89999999999999999999999997765 4456666
Q ss_pred eecccCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHh
Q 016188 99 LNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTE 178 (394)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~ 178 (394)
+.++.... ......++|||+|||+++++++|+++| +.||.|..+.++.+. +|+++|||||+|.+.++|.+|++.
T Consensus 82 ~~~~~~~~----~~~~~~~~l~v~nl~~~~t~~~l~~~F-~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 3nmr_A 82 MKPADSEK----NNAVEDRKLFIGMISKKCTENDIRVMF-SSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKA 155 (175)
T ss_dssp EEECGGGC----CSCGGGSEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHH
T ss_pred Eccccccc----cccCCCCeEEEcCCCCcCCHHHHHHHH-HhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHH
Confidence 66654332 233457899999999999999999999 899999999999986 499999999999999999999999
Q ss_pred hCCeeec---CcceEEeecC
Q 016188 179 MNGVFCS---TRPMRISAAT 195 (394)
Q Consensus 179 l~~~~~~---g~~l~v~~a~ 195 (394)
||+..+. +++|.|.+++
T Consensus 156 l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 156 MHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HTTSCCCTTCSSCCEEEECC
T ss_pred hcCCcccCCCCCCeEEEecC
Confidence 9998775 4999999874
No 16
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=1.3e-32 Score=229.74 Aligned_cols=166 Identities=28% Similarity=0.498 Sum_probs=146.3
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeeee
Q 016188 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLN 100 (394)
Q Consensus 21 ~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~~ 100 (394)
+++++|||+|||+++++++|+++|++||.|.+|++++++.+|+++|||||+|.+.++|.+|++. +..+.++.+.+ .
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v--~ 76 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDP--K 76 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCC--E
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccc--c
Confidence 4679999999999999999999999999999999999988999999999999999999999985 45566644433 3
Q ss_pred cccCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhC
Q 016188 101 WASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMN 180 (394)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~ 180 (394)
++... ....+.++|||+|||+++++++|+++| +.||.|..+.++.++.+|+++|+|||+|.+.++|.+|++ ++
T Consensus 77 ~~~~~-----~~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~ 149 (167)
T 2cjk_A 77 RAIPR-----DEQDKTGKIFVGGIGPDVRPKEFEEFF-SQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NK 149 (167)
T ss_dssp ECCCH-----HHHHHCEEEEEEEECTTCCHHHHHHHH-HTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CS
T ss_pred cccch-----hhccCCCeEEECCCCCCCCHHHHHHHH-HhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CC
Confidence 33211 122346789999999999999999999 899999999999998899999999999999999999996 89
Q ss_pred CeeecCcceEEeecCCC
Q 016188 181 GVFCSTRPMRISAATPK 197 (394)
Q Consensus 181 ~~~~~g~~l~v~~a~~~ 197 (394)
+..+.|+.|.|.++.++
T Consensus 150 ~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 150 FIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp EECSSSSCEEEEECCCC
T ss_pred CEEeCCeEEEEeecCCC
Confidence 99999999999999775
No 17
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=3.7e-31 Score=222.54 Aligned_cols=161 Identities=27% Similarity=0.485 Sum_probs=143.1
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCC--CCccEEEEEeCCHHHHHHHHHhhCCeeec---Ccce
Q 016188 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTG--RSKGYGFVKFLDENERNRAMTEMNGVFCS---TRPM 189 (394)
Q Consensus 115 ~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg--~~~g~afV~f~~~e~a~~ai~~l~~~~~~---g~~l 189 (394)
..++|||+|||+++++++|+++| +.||.|.++.++.++.++ +++|||||+|.+.++|.+|++.+++..+. ++.+
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F-~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELF-EQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHH-HTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHH-HhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 46899999999999999999999 899999999999998876 89999999999999999999999998764 6777
Q ss_pred EEeecCCCCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-
Q 016188 190 RISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG- 268 (394)
Q Consensus 190 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~- 268 (394)
.+.++...... ....++|||+|||..+|+++|+++|++||.|.++.+..+
T Consensus 81 ~~~~~~~~~~~-----------------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~ 131 (175)
T 3nmr_A 81 QMKPADSEKNN-----------------------------AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP 131 (175)
T ss_dssp EEEECGGGCCS-----------------------------CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred EEccccccccc-----------------------------cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC
Confidence 77766543321 124578999999999999999999999999999999876
Q ss_pred ----CcEEEEEeCchHHHHHHHHHhCCceeC---cEEEEEEEcc
Q 016188 269 ----RGCGFVQFAARASAEEAILRMQGHMIG---QQQVRISWGR 305 (394)
Q Consensus 269 ----~g~~fV~f~~~~~a~~a~~~l~g~~~~---g~~l~v~~a~ 305 (394)
+|+|||+|.+.++|.+|+..|||..+. +++|+|+||.
T Consensus 132 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 132 DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 789999999999999999999998765 4999999974
No 18
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=4.8e-32 Score=226.27 Aligned_cols=159 Identities=25% Similarity=0.491 Sum_probs=144.0
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeec
Q 016188 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (394)
Q Consensus 115 ~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a 194 (394)
++++|||+|||+++++++|+++| +.||.|.++.++.++.+|+++|||||+|.+.++|..|++. +..+.|+.|.+.++
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYF-GKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHH-TTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHH-HhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 47899999999999999999999 8999999999999999999999999999999999999984 57889999998887
Q ss_pred CCCCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------
Q 016188 195 TPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------ 268 (394)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~------ 268 (394)
.+.... ...++|||+|||..+++++|+++|++||.|.++.+..+
T Consensus 79 ~~~~~~------------------------------~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~ 128 (167)
T 2cjk_A 79 IPRDEQ------------------------------DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQS 128 (167)
T ss_dssp CCHHHH------------------------------HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTT
T ss_pred cchhhc------------------------------cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCcc
Confidence 543211 12468999999999999999999999999999999865
Q ss_pred CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccC
Q 016188 269 RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307 (394)
Q Consensus 269 ~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 307 (394)
+|+|||+|.+.++|.+|++ +++..|+|+.|+|.+|.++
T Consensus 129 ~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 129 RGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp SEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred ceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 5899999999999999987 8999999999999999875
No 19
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=3.5e-30 Score=233.57 Aligned_cols=191 Identities=25% Similarity=0.368 Sum_probs=150.5
Q ss_pred CCCCcceEEEcCCCCCCCHHHHH----HHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCc
Q 016188 112 DAGPEHSIFVGDLAPDVTDYLLQ----ETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTR 187 (394)
Q Consensus 112 ~~~~~~~l~v~nlp~~~t~~~l~----~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~ 187 (394)
+..++++|||+|||+++++++|+ ++| +.||.|.+|.+++ +++++|||||+|.+.++|.+|++.|++..+.|+
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F-~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIF-SQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHH-hccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 45668999999999999999976 899 8999999999886 588999999999999999999999999999999
Q ss_pred ceEEeecCCCCCccccccccc--------------------cccc-----------CCC---------------------
Q 016188 188 PMRISAATPKKTTGFQQQYAA--------------------VKAT-----------YPV--------------------- 215 (394)
Q Consensus 188 ~l~v~~a~~~~~~~~~~~~~~--------------------~~~~-----------~~~--------------------- 215 (394)
.|.|.++.............. .... .+.
T Consensus 81 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (282)
T 3pgw_A 81 PMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQ 160 (282)
T ss_pred EEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCC
Confidence 999999866543110000000 0000 000
Q ss_pred ------CCCCCC-----------------------cccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEe
Q 016188 216 ------AAYTTP-----------------------VQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIP 266 (394)
Q Consensus 216 ------~~~~~~-----------------------~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~ 266 (394)
.....+ ............++|||+|||..+++++|+++|++||.|.++++.
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~ 240 (282)
T 3pgw_A 161 PPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 240 (282)
T ss_pred CCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEe
Confidence 000000 000011233456899999999999999999999999999999999
Q ss_pred CCC-cEEEEEeCchHHHHHHHHHhCCceeC-cEEEEEEEccc
Q 016188 267 MGR-GCGFVQFAARASAEEAILRMQGHMIG-QQQVRISWGRK 306 (394)
Q Consensus 267 ~~~-g~~fV~f~~~~~a~~a~~~l~g~~~~-g~~l~v~~a~~ 306 (394)
.++ |+|||+|.+.++|.+|+..|||..|+ |+.|+|+|++.
T Consensus 241 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 241 PGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred cCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 876 99999999999999999999999999 99999999863
No 20
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=2.1e-30 Score=227.50 Aligned_cols=189 Identities=23% Similarity=0.360 Sum_probs=150.3
Q ss_pred CCCcceEEEcCCCC-CCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEE
Q 016188 113 AGPEHSIFVGDLAP-DVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191 (394)
Q Consensus 113 ~~~~~~l~v~nlp~-~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v 191 (394)
..++++|||+|||+ ++++++|+++| +.||.|.+|.++.++ +|||||+|.+.++|++|++.+++..+.|+.|.|
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F-~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILF-GVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHH-HHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHH-HhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 35688999999999 99999999999 899999999999874 789999999999999999999999999999999
Q ss_pred eecCCCCCcccccccc---ccc--ccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccC-CeEEEEE
Q 016188 192 SAATPKKTTGFQQQYA---AVK--ATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFG-EIVNVKI 265 (394)
Q Consensus 192 ~~a~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G-~i~~~~i 265 (394)
.++............. ... ..........+..........+.++|||+|||..+++++|+++|++|| .|.++.+
T Consensus 105 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i 184 (229)
T 2adc_A 105 TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKF 184 (229)
T ss_dssp ECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEE
T ss_pred EEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEE
Confidence 9987653221110000 000 000000000011111112234578999999999999999999999999 9999999
Q ss_pred eC-CCcEEEEEeCchHHHHHHHHHhCCceeC-cEEEEEEEcccC
Q 016188 266 PM-GRGCGFVQFAARASAEEAILRMQGHMIG-QQQVRISWGRKQ 307 (394)
Q Consensus 266 ~~-~~g~~fV~f~~~~~a~~a~~~l~g~~~~-g~~l~v~~a~~~ 307 (394)
.. ++|+|||+|.+.++|.+|+..|||..++ |+.|+|+|++++
T Consensus 185 ~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 185 FQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 54 7999999999999999999999999999 999999999864
No 21
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=6.7e-31 Score=225.57 Aligned_cols=177 Identities=15% Similarity=0.330 Sum_probs=143.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhhCC-----------CeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCee
Q 016188 115 PEHSIFVGDLAPDVTDYLLQETFRSQYP-----------SVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVF 183 (394)
Q Consensus 115 ~~~~l~v~nlp~~~t~~~l~~~f~~~~G-----------~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~ 183 (394)
.+++|||+|||+++++++|+++| +.|| .|.++.+ ++++|||||+|.+.++|.+|+ .+++..
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F-~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFF-NAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHH-HHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHH-HHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 46899999999999999999999 8994 4444443 567899999999999999999 899999
Q ss_pred ecCcceEEeecCCCCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEE
Q 016188 184 CSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNV 263 (394)
Q Consensus 184 ~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~ 263 (394)
+.|+.|.|.++............ ... ..............++|||+|||..+++++|+++|++||.|.++
T Consensus 75 ~~g~~i~v~~~~~~~~~~~~~~~---------~~~-~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~ 144 (198)
T 2yh0_A 75 FQGQSLKIRRPHDYQPLPGMSEN---------PSV-YVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAF 144 (198)
T ss_dssp ETTEEEEEECCCCCCCCCCSSSC---------SSC-CCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEE
T ss_pred EcCceEEEeCCCCCCCCCCCcCC---------CcC-CCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEE
Confidence 99999999998765432211000 000 00011112233567999999999999999999999999999999
Q ss_pred EEeCC------CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccCCC
Q 016188 264 KIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDV 309 (394)
Q Consensus 264 ~i~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 309 (394)
.+..+ +|+|||+|.+.++|.+|+..|||..|+|+.|+|++++++..
T Consensus 145 ~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 145 NLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred EEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 99876 68999999999999999999999999999999999988654
No 22
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=1.8e-30 Score=217.70 Aligned_cols=160 Identities=22% Similarity=0.472 Sum_probs=141.7
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHhhc----C-------CceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCC
Q 016188 21 EEVRTLWIGDLQYWFDENYLSSCFAHT----G-------EVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTP 89 (394)
Q Consensus 21 ~~~~~v~V~nLp~~~~e~~l~~~f~~~----G-------~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~ 89 (394)
++.++|||+|||+++++++|+++|++| | .|.++++.++ +|||||+|.+.++|.+|+ .+++..
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~------~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT------TTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC------CCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 467999999999999999999999999 6 7777776554 699999999999999999 899999
Q ss_pred CCCccceeeeecccCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCH
Q 016188 90 MPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDE 169 (394)
Q Consensus 90 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~ 169 (394)
+.++.+. +.++... ......++|||+|||+++++++|+++| +.||.|..+.++.++.+|+++|+|||+|.+.
T Consensus 75 ~~g~~i~--v~~~~~~-----~~~~~~~~l~v~nlp~~~t~~~l~~~f-~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~ 146 (172)
T 2g4b_A 75 FQGQSLK--IRRPHDY-----QPLPGAHKLFIGGLPNYLNDDQVKELL-TSFGPLKAFNLVKDSATGLSKGYAFCEYVDI 146 (172)
T ss_dssp ETTEECE--EECCSSC-----CCCTTTTCEEEECCCTTCCHHHHHHHH-HTTSCEEEEEEEECTTTCSEEEEEEEEESST
T ss_pred ecCceee--ecCCccc-----CCCCCCCEEEEEcCCCcCCHHHHHHHH-HhcCCceEEEEEecCCCCCcceEEEEEeCCH
Confidence 9985544 4444321 223347899999999999999999999 8999999999999988999999999999999
Q ss_pred HHHHHHHHhhCCeeecCcceEEeecC
Q 016188 170 NERNRAMTEMNGVFCSTRPMRISAAT 195 (394)
Q Consensus 170 e~a~~ai~~l~~~~~~g~~l~v~~a~ 195 (394)
++|.+|++.|++..+.|+.|.|.+|.
T Consensus 147 ~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 147 NVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp THHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 99999999999999999999999874
No 23
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=7.2e-31 Score=220.85 Aligned_cols=164 Identities=23% Similarity=0.402 Sum_probs=143.4
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEE
Q 016188 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191 (394)
Q Consensus 112 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v 191 (394)
...+.++|||+|||+++++++|+++| +.||.+.. .++.+..+++++|||||+|.+.++|.+|+ ++++..+.|+.|.|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f-~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v 85 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAI-SELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKL 85 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHH-HHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHH-HHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEE
Confidence 44568999999999999999999999 88988776 34455567899999999999999999999 69999999999999
Q ss_pred eecCCCCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEe--CCC
Q 016188 192 SAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIP--MGR 269 (394)
Q Consensus 192 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~--~~~ 269 (394)
.++...... .....++|||+|||..+++++|+++|++||.|..+ .. ..+
T Consensus 86 ~~~~~~~~~----------------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~ 136 (175)
T 1fje_B 86 EKPKGRDSK----------------------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSK 136 (175)
T ss_dssp ECCCCSSCS----------------------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCC
T ss_pred ecCCCcccc----------------------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCc
Confidence 998765332 12245899999999999999999999999999887 21 247
Q ss_pred cEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccC
Q 016188 270 GCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307 (394)
Q Consensus 270 g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 307 (394)
|+|||+|.+.++|.+|+..|||..|+|+.|+|+|++++
T Consensus 137 g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 137 GIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp SEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred eEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 99999999999999999999999999999999999875
No 24
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=5.2e-30 Score=220.09 Aligned_cols=184 Identities=17% Similarity=0.190 Sum_probs=141.5
Q ss_pred CcceEEEcCCC-CCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEee
Q 016188 115 PEHSIFVGDLA-PDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISA 193 (394)
Q Consensus 115 ~~~~l~v~nlp-~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~ 193 (394)
++++|||+||| +++++++|+++| +.||.|.+|+++.+ .+|||||+|.+.++|+.|++.||+..+.|+.|.|.+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F-~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVF-CLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHH-TTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHH-HhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 47899999999 899999999999 89999999999865 479999999999999999999999999999999999
Q ss_pred cCCCCCcccccc-ccccc---ccCCCCCCC---CCcccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCe--EEEE
Q 016188 194 ATPKKTTGFQQQ-YAAVK---ATYPVAAYT---TPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEI--VNVK 264 (394)
Q Consensus 194 a~~~~~~~~~~~-~~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i--~~~~ 264 (394)
+........... ..... ......... .+..........+.++|||+|||+.+|+++|+++|++||.| .+++
T Consensus 77 s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~ 156 (205)
T 3tyt_A 77 SKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVK 156 (205)
T ss_dssp CSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEE
T ss_pred ccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEE
Confidence 865432111000 00000 000000000 00000011123456899999999999999999999999999 8999
Q ss_pred EeCC----CcEEEEEeCchHHHHHHHHHhCCceeCcE----EEEEEEc
Q 016188 265 IPMG----RGCGFVQFAARASAEEAILRMQGHMIGQQ----QVRISWG 304 (394)
Q Consensus 265 i~~~----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~----~l~v~~a 304 (394)
++.+ +|+|||+|.+.++|.+|+..|||..|.|+ ++.|++|
T Consensus 157 ~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 157 VFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp ECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 9875 48999999999999999999999999887 5666654
No 25
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=3.9e-30 Score=220.84 Aligned_cols=186 Identities=23% Similarity=0.366 Sum_probs=148.1
Q ss_pred cceEEEcCCCC-CCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeec
Q 016188 116 EHSIFVGDLAP-DVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (394)
Q Consensus 116 ~~~l~v~nlp~-~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a 194 (394)
+++|||+|||+ ++++++|+++| +.||.|.+|.++.++ +|||||+|.+.++|..|++.|++..+.|+.|.|.++
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F-~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILF-GVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHH-HTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CcEEEEeCCCcccCCHHHHHHHH-HhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 67999999999 99999999999 899999999998764 789999999999999999999999999999999998
Q ss_pred CCCCCcccccccc---cccc--cCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccC-CeEEEEEeC-
Q 016188 195 TPKKTTGFQQQYA---AVKA--TYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFG-EIVNVKIPM- 267 (394)
Q Consensus 195 ~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G-~i~~~~i~~- 267 (394)
............. .... ..+......+..........+.++|||+|||..+++++|+++|++|| .|.++.+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~ 156 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 156 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC
Confidence 7653221110000 0000 00000000011111112234578999999999999999999999999 999999955
Q ss_pred CCcEEEEEeCchHHHHHHHHHhCCceeC-cEEEEEEEcccC
Q 016188 268 GRGCGFVQFAARASAEEAILRMQGHMIG-QQQVRISWGRKQ 307 (394)
Q Consensus 268 ~~g~~fV~f~~~~~a~~a~~~l~g~~~~-g~~l~v~~a~~~ 307 (394)
++|+|||+|.+.++|.+|+..|||..++ |+.|+|+|++++
T Consensus 157 ~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 6899999999999999999999999999 999999999864
No 26
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=7.9e-30 Score=218.90 Aligned_cols=169 Identities=21% Similarity=0.419 Sum_probs=143.0
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHhhc----C-------CceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCC
Q 016188 21 EEVRTLWIGDLQYWFDENYLSSCFAHT----G-------EVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTP 89 (394)
Q Consensus 21 ~~~~~v~V~nLp~~~~e~~l~~~f~~~----G-------~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~ 89 (394)
+.+++|||+|||+++++++|+++|++| | .|.++.+.+ ++|||||+|.+.++|.+|+ .|++..
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~------~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET------TTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC------CCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 457999999999999999999999999 5 566666543 5699999999999999999 899999
Q ss_pred CCCccceeeeecccCCCCC---------------CCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCC
Q 016188 90 MPGTEQNFRLNWASFGIGE---------------KRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPN 154 (394)
Q Consensus 90 ~~~~~~~v~~~~~~~~~~~---------------~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~ 154 (394)
+.++.+.+ .++...... ......+.++|||+|||+++++++|+++| +.||.|..+.++.++.
T Consensus 75 ~~g~~i~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f-~~~G~v~~~~~~~~~~ 151 (198)
T 2yh0_A 75 FQGQSLKI--RRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELL-TSFGPLKAFNLVKDSA 151 (198)
T ss_dssp ETTEEEEE--ECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHH-HTBSCEEEEEEEECTT
T ss_pred EcCceEEE--eCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHH-HHcCCccEEEEeecCC
Confidence 99865444 444322111 11112457899999999999999999999 8999999999999988
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeecCCCCC
Q 016188 155 TGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKT 199 (394)
Q Consensus 155 tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a~~~~~ 199 (394)
+|+++|||||+|.+.++|.+|++.|++..+.|+.|.|.++.++..
T Consensus 152 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 152 TGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp TCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 999999999999999999999999999999999999999987643
No 27
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=1.5e-29 Score=212.12 Aligned_cols=153 Identities=16% Similarity=0.422 Sum_probs=136.5
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhhC----C-------CeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCee
Q 016188 115 PEHSIFVGDLAPDVTDYLLQETFRSQY----P-------SVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVF 183 (394)
Q Consensus 115 ~~~~l~v~nlp~~~t~~~l~~~f~~~~----G-------~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~ 183 (394)
+.++|||+|||+++++++|+++| +.| | .|.++.+. +++|||||+|.+.++|.+|+ .+++..
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F-~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFF-NAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHH-HHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred cccEEEEcCCCcccCHHHHHHHH-HHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 47899999999999999999999 888 6 56666553 45899999999999999999 899999
Q ss_pred ecCcceEEeecCCCCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEE
Q 016188 184 CSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNV 263 (394)
Q Consensus 184 ~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~ 263 (394)
+.|+.|.|.++...... ...++|||+|||..+++++|+++|++||.|.++
T Consensus 75 ~~g~~i~v~~~~~~~~~------------------------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v 124 (172)
T 2g4b_A 75 FQGQSLKIRRPHDYQPL------------------------------PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAF 124 (172)
T ss_dssp ETTEECEEECCSSCCCC------------------------------TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEE
T ss_pred ecCceeeecCCcccCCC------------------------------CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEE
Confidence 99999999887544321 125889999999999999999999999999999
Q ss_pred EEeCC------CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcc
Q 016188 264 KIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (394)
Q Consensus 264 ~i~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 305 (394)
.+..+ +|+|||+|.+.++|.+|+..|||..|+|+.|+|++|.
T Consensus 125 ~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 125 NLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp EEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 99876 5899999999999999999999999999999999873
No 28
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=1.5e-29 Score=217.27 Aligned_cols=166 Identities=15% Similarity=0.192 Sum_probs=137.0
Q ss_pred CCcceEEEcCCC-CcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeee
Q 016188 21 EEVRTLWIGDLQ-YWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRL 99 (394)
Q Consensus 21 ~~~~~v~V~nLp-~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~ 99 (394)
.+.++|||+||| +.+++++|+++|++||.|.+|+++++ ++|||||+|.+.++|.+|++.|||..+.++.+.|..
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 356899999999 89999999999999999999999875 379999999999999999999999999997666654
Q ss_pred ecccCC-CCC-------------------C----------CCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCe--eEE
Q 016188 100 NWASFG-IGE-------------------K----------RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV--RGA 147 (394)
Q Consensus 100 ~~~~~~-~~~-------------------~----------~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v--~~v 147 (394)
+..... ... . .....++++|||+|||+++++++|+++| +.||.| ..+
T Consensus 77 s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F-~~~G~v~~~~v 155 (205)
T 3tyt_A 77 SKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEIC-DELGVKRPTSV 155 (205)
T ss_dssp CSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHH-HHHTCCCCSEE
T ss_pred ccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHH-HhcCCcceEEE
Confidence 322110 000 0 0012356789999999999999999999 899999 889
Q ss_pred EEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCc----ceEEeec
Q 016188 148 KVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTR----PMRISAA 194 (394)
Q Consensus 148 ~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~----~l~v~~a 194 (394)
+++.+. +..+|+|||+|.+.++|..|+..||+..+.|+ ++.|+++
T Consensus 156 ~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 156 KVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp EECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 988774 56679999999999999999999999999776 4555543
No 29
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=1.8e-30 Score=218.40 Aligned_cols=167 Identities=19% Similarity=0.293 Sum_probs=142.1
Q ss_pred CCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCcccee
Q 016188 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNF 97 (394)
Q Consensus 18 ~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v 97 (394)
...++.++|||+|||+++++++|+++|..||.+..+ ++.+..+++++|||||+|.+.++|.+|+ .|++..+.++ .+
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~--~l 83 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-AVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGN--EI 83 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-CCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTE--EE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-EEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCe--EE
Confidence 456778999999999999999999999999987663 3344447889999999999999999999 4999999985 45
Q ss_pred eeecccCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHH
Q 016188 98 RLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMT 177 (394)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~ 177 (394)
.+.++... ......+.++|||+|||+++++++|+++| +.||.|..+ ..+++++|+|||+|.+.++|.+|++
T Consensus 84 ~v~~~~~~---~~~~~~~~~~l~v~nlp~~~t~~~l~~~F-~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~ 154 (175)
T 1fje_B 84 KLEKPKGR---DSKKVRAARTLLAKNLSFNITEDELKEVF-EDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLE 154 (175)
T ss_dssp EEECCCCS---SCSTTGGGGEEEEESCCSSCCHHHHHHHC-TTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHH
T ss_pred EEecCCCc---cccccccCCEEEEeCCCCCCCHHHHHHHH-HhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHH
Confidence 55555432 12234467899999999999999999999 899987655 4578999999999999999999999
Q ss_pred hhCCeeecCcceEEeecCCC
Q 016188 178 EMNGVFCSTRPMRISAATPK 197 (394)
Q Consensus 178 ~l~~~~~~g~~l~v~~a~~~ 197 (394)
.|++..+.|+.|.|.++.++
T Consensus 155 ~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 155 EKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHTEEEETTEEEEEEECSSC
T ss_pred HhCCCEECCeEEEEEecCCC
Confidence 99999999999999999765
No 30
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=4.7e-29 Score=226.41 Aligned_cols=173 Identities=18% Similarity=0.305 Sum_probs=154.9
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeeeec
Q 016188 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNW 101 (394)
Q Consensus 22 ~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~~~ 101 (394)
..++|||+|||+++++++|+++|++||.|.+|+++.+..+|.++|||||+|.+.++|.+|++.|++..+.++ .+.+.+
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~--~i~v~~ 171 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPR--TLYVHW 171 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE--ECEEEE
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCc--EEEEEE
Confidence 457899999999999999999999999999999999988999999999999999999999999999999885 455555
Q ss_pred ccCCCCCCCCCCCCcceEEEcCCCCCC-CHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhC
Q 016188 102 ASFGIGEKRPDAGPEHSIFVGDLAPDV-TDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMN 180 (394)
Q Consensus 102 ~~~~~~~~~~~~~~~~~l~v~nlp~~~-t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~ 180 (394)
+..... .......++|||+|||+++ ++++|+++| +.||.|..+.++.+. +|+++|+|||+|.+.++|.+|++.|+
T Consensus 172 a~~~~~--~~~~~~~~~l~v~nlp~~~~~~~~l~~~f-~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~ 247 (284)
T 3smz_A 172 TDAGQL--TPALLHSRCLCVDRLPPGFNDVDALCRAL-SAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQAD 247 (284)
T ss_dssp CCGGGC--CTTTTSCSEEEEECCCTTCCCHHHHHHHT-CSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCCC--CcccCCccEEEEecCCcccCCHHHHHHHh-hCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhC
Confidence 543322 2334567899999999996 999999999 899999999999986 69999999999999999999999999
Q ss_pred CeeecCcceEEeecCCCCCc
Q 016188 181 GVFCSTRPMRISAATPKKTT 200 (394)
Q Consensus 181 ~~~~~g~~l~v~~a~~~~~~ 200 (394)
+..+.|+.|.|.++.++...
T Consensus 248 g~~~~g~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 248 GLSLGGSHLRVSFCAPGPPG 267 (284)
T ss_dssp TCEETTEECEEEECCSSSCH
T ss_pred CCccCCeEEEEEEecCCCcc
Confidence 99999999999999887654
No 31
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.96 E-value=1e-28 Score=223.94 Aligned_cols=169 Identities=21% Similarity=0.375 Sum_probs=143.0
Q ss_pred CCcCCcceEEEcCCCCcCCHHHHH----HHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCc
Q 016188 18 MTLEEVRTLWIGDLQYWFDENYLS----SCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGT 93 (394)
Q Consensus 18 ~~~~~~~~v~V~nLp~~~~e~~l~----~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~ 93 (394)
.+.++.++|||+|||+++++++|+ ++|++||.|.+|++.+ +++++|||||+|.+.++|.+|++.|++..|.++
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 456778999999999999999977 8999999999999886 578899999999999999999999999999996
Q ss_pred cceeeeecccCCCC------------------------------------------------------------------
Q 016188 94 EQNFRLNWASFGIG------------------------------------------------------------------ 107 (394)
Q Consensus 94 ~~~v~~~~~~~~~~------------------------------------------------------------------ 107 (394)
.+.|..........
T Consensus 81 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (282)
T 3pgw_A 81 PMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQ 160 (282)
T ss_pred EEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCC
Confidence 65554432211100
Q ss_pred --------------------------------------CCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEE
Q 016188 108 --------------------------------------EKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKV 149 (394)
Q Consensus 108 --------------------------------------~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i 149 (394)
.......+.++|||+|||.++++++|+++| +.||.|.++++
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F-~~~G~i~~v~~ 239 (282)
T 3pgw_A 161 PPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLF-NQFPGFKEVRL 239 (282)
T ss_pred CCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHH-HhcCCeEEEEE
Confidence 000122356789999999999999999999 89999999999
Q ss_pred eeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeec-CcceEEeecC
Q 016188 150 VTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCS-TRPMRISAAT 195 (394)
Q Consensus 150 ~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~-g~~l~v~~a~ 195 (394)
+.++ +|+|||+|.+.++|.+|++.|++..+. |+.|.|.|+.
T Consensus 240 ~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 240 VPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred ecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 8653 589999999999999999999999998 9999999974
No 32
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=2.6e-29 Score=229.01 Aligned_cols=171 Identities=17% Similarity=0.317 Sum_probs=143.1
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHhhcC-CceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeeee
Q 016188 22 EVRTLWIGDLQYWFDENYLSSCFAHTG-EVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLN 100 (394)
Q Consensus 22 ~~~~v~V~nLp~~~~e~~l~~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~~ 100 (394)
+.++|||+|||+++++++|+++|++|| .|.+|+++++. .+.++|||||+|.+.++|.+|++.|++..+.++. +.+.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~--l~v~ 192 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYT--LVTK 192 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEE--CEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcE--EEEE
Confidence 578999999999999999999999999 99999999987 4889999999999999999999999999999854 4555
Q ss_pred cccCCCCCCC--CCCCCcceEEEcCCCCC-CCHHHHHHHHHhhCCCeeEEEEeeCCC-CCCCccEEEEEeCCHHHHHHHH
Q 016188 101 WASFGIGEKR--PDAGPEHSIFVGDLAPD-VTDYLLQETFRSQYPSVRGAKVVTDPN-TGRSKGYGFVKFLDENERNRAM 176 (394)
Q Consensus 101 ~~~~~~~~~~--~~~~~~~~l~v~nlp~~-~t~~~l~~~f~~~~G~v~~v~i~~~~~-tg~~~g~afV~f~~~e~a~~ai 176 (394)
++.......+ ......++|||+|||++ +++++|+++| +.||.|..+.++.+.. ||.++|||||+|.+.++|.+|+
T Consensus 193 ~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F-~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~ 271 (292)
T 2ghp_A 193 VSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESF-EGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL 271 (292)
T ss_dssp ECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHH-GGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG
T ss_pred ECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHH-hccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH
Confidence 5543322222 24456789999999999 9999999999 8999999999999876 6999999999999999999999
Q ss_pred HhhCCeeecCcceEEeecCCC
Q 016188 177 TEMNGVFCSTRPMRISAATPK 197 (394)
Q Consensus 177 ~~l~~~~~~g~~l~v~~a~~~ 197 (394)
.|++..+.|+.|.|.++.++
T Consensus 272 -~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 272 -QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp -GGTTEEETTEEEEEEECCCC
T ss_pred -HhcCCEECCcEEEEEEecCC
Confidence 99999999999999999875
No 33
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=2.3e-28 Score=214.50 Aligned_cols=168 Identities=17% Similarity=0.230 Sum_probs=142.2
Q ss_pred CcCCcceEEEcCCCC-cCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCcccee
Q 016188 19 TLEEVRTLWIGDLQY-WFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNF 97 (394)
Q Consensus 19 ~~~~~~~v~V~nLp~-~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v 97 (394)
...+.++|||+|||+ ++++++|+++|++||.|.+|++++++ +|||||+|.+.++|.+|++.|++..+.++.+.+
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 445678999999999 99999999999999999999999875 689999999999999999999999999966555
Q ss_pred eeecccCCCCCC----------------------------CCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCC-CeeEEE
Q 016188 98 RLNWASFGIGEK----------------------------RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYP-SVRGAK 148 (394)
Q Consensus 98 ~~~~~~~~~~~~----------------------------~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G-~v~~v~ 148 (394)
...........+ .....+.++|||+|||+++++++|+++| +.|| .|..+.
T Consensus 105 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f-~~~G~~i~~v~ 183 (229)
T 2adc_A 105 TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLF-SSNGGVVKGFK 183 (229)
T ss_dssp ECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHH-HTTSCCEEEEE
T ss_pred EEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHH-HHcCCCeeEEE
Confidence 543322100000 0112346889999999999999999999 8999 999999
Q ss_pred EeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeec-CcceEEeecCCC
Q 016188 149 VVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCS-TRPMRISAATPK 197 (394)
Q Consensus 149 i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~-g~~l~v~~a~~~ 197 (394)
++.+ .+|+|||+|.+.++|.+|++.|++..+. |+.|.|.++.++
T Consensus 184 i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 184 FFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp ECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 8753 4789999999999999999999999998 999999998764
No 34
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=3.2e-28 Score=217.74 Aligned_cols=160 Identities=29% Similarity=0.483 Sum_probs=141.9
Q ss_pred CCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCcccee
Q 016188 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNF 97 (394)
Q Consensus 18 ~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v 97 (394)
....+.++|||+|||+++++++|+++|++||.|.+|++.++ +|||||+|.+.++|.+|++.|++..+.++. +
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~--l 88 (261)
T 3sde_A 17 KTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRP--L 88 (261)
T ss_dssp CSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEE--C
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCce--e
Confidence 34567789999999999999999999999999999999764 599999999999999999999999998854 4
Q ss_pred eeecccCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHH
Q 016188 98 RLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMT 177 (394)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~ 177 (394)
.+.++. +..+|||+|||+.+++++|+++| +.||.|..+.++.+ .+|+++|||||+|.+.++|.+|+.
T Consensus 89 ~v~~a~-----------~~~~l~v~nl~~~~t~~~l~~~F-~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~ 155 (261)
T 3sde_A 89 RIRFAT-----------HGAALTVKNLSPVVSNELLEQAF-SQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALE 155 (261)
T ss_dssp EEEECC-----------CSSEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHH
T ss_pred Eeeecc-----------cCCcccccCCCCCCCHHHHHHHH-HhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHH
Confidence 555543 26789999999999999999999 89999999999999 579999999999999999999999
Q ss_pred hhC-Ceeec---CcceEEeecCCCC
Q 016188 178 EMN-GVFCS---TRPMRISAATPKK 198 (394)
Q Consensus 178 ~l~-~~~~~---g~~l~v~~a~~~~ 198 (394)
.|+ +..+. ++.|.|.++....
T Consensus 156 ~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 156 RCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp HHHHSCEESSSSCCBCEEEECCCEE
T ss_pred HhcCCeEEecCCCceEEEeeccccC
Confidence 994 55554 9999999987654
No 35
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.96 E-value=3.2e-28 Score=208.88 Aligned_cols=164 Identities=18% Similarity=0.245 Sum_probs=140.1
Q ss_pred cceEEEcCCCC-cCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeeeec
Q 016188 23 VRTLWIGDLQY-WFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNW 101 (394)
Q Consensus 23 ~~~v~V~nLp~-~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~~~ 101 (394)
.++|||+|||+ ++++++|+++|++||.|.+|++++++ +|||||+|.+.++|.+|++.|++..+.++.+.+....
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 58999999999 99999999999999999999998875 6899999999999999999999999999666665443
Q ss_pred ccCCCCCC----------------------------CCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCC-CeeEEEEeeC
Q 016188 102 ASFGIGEK----------------------------RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYP-SVRGAKVVTD 152 (394)
Q Consensus 102 ~~~~~~~~----------------------------~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G-~v~~v~i~~~ 152 (394)
.......+ .....++++|||+|||.++++++|+++| +.|| .|..+.++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f-~~~G~~v~~v~i~~~ 156 (198)
T 1qm9_A 78 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLF-SSNGGVVKGFKFFQK 156 (198)
T ss_dssp CCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHH-HHTTSCCCEEEESST
T ss_pred CCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHH-HHcCCCceEEEEEeC
Confidence 22100000 0112457889999999999999999999 8999 9999998764
Q ss_pred CCCCCCccEEEEEeCCHHHHHHHHHhhCCeeec-CcceEEeecCCC
Q 016188 153 PNTGRSKGYGFVKFLDENERNRAMTEMNGVFCS-TRPMRISAATPK 197 (394)
Q Consensus 153 ~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~-g~~l~v~~a~~~ 197 (394)
.+|+|||+|.+.++|.+|++.|++..+. |+.|.|.++.++
T Consensus 157 -----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 -----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp -----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred -----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 3789999999999999999999999998 999999998754
No 36
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.95 E-value=1.7e-27 Score=213.00 Aligned_cols=154 Identities=28% Similarity=0.463 Sum_probs=139.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEe
Q 016188 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRIS 192 (394)
Q Consensus 113 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~ 192 (394)
....++|||+|||+++|+++|+++| +.||.|..|.+.+ ++|||||+|.+.++|..|+..+++..+.|+.|.|.
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F-~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLF-ERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHT-GGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHH-HhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 3457899999999999999999999 8999999999864 47899999999999999999999999999999999
Q ss_pred ecCCCCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC----
Q 016188 193 AATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG---- 268 (394)
Q Consensus 193 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~---- 268 (394)
++.+ .++|||+|||..+|+++|+++|+.||.|.++.|+.+
T Consensus 92 ~a~~------------------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~ 135 (261)
T 3sde_A 92 FATH------------------------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGR 135 (261)
T ss_dssp ECCC------------------------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSC
T ss_pred eccc------------------------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCC
Confidence 8853 268999999999999999999999999999999865
Q ss_pred -CcEEEEEeCchHHHHHHHHHhCC-ceeC---cEEEEEEEcccCCC
Q 016188 269 -RGCGFVQFAARASAEEAILRMQG-HMIG---QQQVRISWGRKQDV 309 (394)
Q Consensus 269 -~g~~fV~f~~~~~a~~a~~~l~g-~~~~---g~~l~v~~a~~~~~ 309 (394)
+|+|||+|.+.++|.+|+..||+ ..+. +++|.|.++.+...
T Consensus 136 ~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~~ 181 (261)
T 3sde_A 136 ATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDD 181 (261)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEES
T ss_pred cCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccCc
Confidence 79999999999999999999954 4454 99999999986543
No 37
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.89 E-value=3.3e-22 Score=164.81 Aligned_cols=146 Identities=24% Similarity=0.319 Sum_probs=115.3
Q ss_pred EEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCcccee-----eeec-ccCCCCCCCCCCCCcceEEEcCCC
Q 016188 52 SIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNF-----RLNW-ASFGIGEKRPDAGPEHSIFVGDLA 125 (394)
Q Consensus 52 ~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v-----~~~~-~~~~~~~~~~~~~~~~~l~v~nlp 125 (394)
++++..+. .+++|||||+|.+.++|++|++.+++.........+ .... ................+|||+|||
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 46777776 368999999999999999999887653322211111 1111 111111222334557899999999
Q ss_pred CCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeecCCCCCc
Q 016188 126 PDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTT 200 (394)
Q Consensus 126 ~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a~~~~~~ 200 (394)
+++++++|+++| +.||.|..+.++.++.+|+++|||||+|.+.++|+.|++.|++..+.|+.|.|.++.+....
T Consensus 80 ~~~~~~~l~~~F-~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 80 YRTSPDTLRRVF-EKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 153 (158)
T ss_dssp TTCCHHHHHHHH-HHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCC
T ss_pred CCCCHHHHHHHH-HhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 999999999999 89999999999999989999999999999999999999999999999999999999876543
No 38
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.88 E-value=1.1e-21 Score=161.60 Aligned_cols=139 Identities=19% Similarity=0.279 Sum_probs=107.4
Q ss_pred EEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeee-------cCcceEEeecCCCCCcccccccccccccCCCCCC
Q 016188 146 GAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFC-------STRPMRISAATPKKTTGFQQQYAAVKATYPVAAY 218 (394)
Q Consensus 146 ~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~-------~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~ 218 (394)
.+.++.+. .+++||+||+|.+.++|++|++.+++... .+.............
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 60 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHH------------------- 60 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCC-------------------
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccc-------------------
Confidence 35666664 36899999999999999999988765332 222222222111110
Q ss_pred CCCcccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEeCchHHHHHHHHHhCCc
Q 016188 219 TTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGH 292 (394)
Q Consensus 219 ~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~------~g~~fV~f~~~~~a~~a~~~l~g~ 292 (394)
..........++|||+|||..+++++|+++|++||.|.++.|+.+ +|||||+|.+.++|.+|+..|||.
T Consensus 61 -----~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 135 (158)
T 2kn4_A 61 -----HHHHMDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGA 135 (158)
T ss_dssp -----SSCCCCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTE
T ss_pred -----cccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 011222345689999999999999999999999999999999875 689999999999999999999999
Q ss_pred eeCcEEEEEEEcccCCCC
Q 016188 293 MIGQQQVRISWGRKQDVT 310 (394)
Q Consensus 293 ~~~g~~l~v~~a~~~~~~ 310 (394)
.|+|+.|+|.+++++..+
T Consensus 136 ~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 136 VLDGRELRVQMARYGRPP 153 (158)
T ss_dssp ESSSSEEEEEEECCSSCC
T ss_pred EECCeEEEEEECCCCCCC
Confidence 999999999999876543
No 39
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.87 E-value=4.1e-22 Score=162.61 Aligned_cols=138 Identities=20% Similarity=0.262 Sum_probs=113.9
Q ss_pred CCCccEEEEEeCCHHHHHHHHHhh-CCeeecCcceEEeecCCCCCcccccccccccccCCCCCCCCCcccCCCCCCCCcc
Q 016188 156 GRSKGYGFVKFLDENERNRAMTEM-NGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNT 234 (394)
Q Consensus 156 g~~~g~afV~f~~~e~a~~ai~~l-~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (394)
...+|+++|+|.+.++|++|++.+ ++..++| .+.+.++........... ..............+
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~--------------~~~~~~~~~~~~~~~ 74 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSH--------------HHHHHMHRDSCPLDC 74 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSS--------------SCCCCSCSSSSTTSC
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccc--------------cccccccccCCCCCC
Confidence 467999999999999999999999 9999999 999987754322100000 000011223344668
Q ss_pred EEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccCC
Q 016188 235 TIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG-RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308 (394)
Q Consensus 235 ~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~-~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 308 (394)
+|||+|||+.+|+++|+++|++||.|.++.++.+ +|||||+|.+.++|.+|+..|||..|+|+.|+|++++++.
T Consensus 75 ~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 75 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp EEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 9999999999999999999999999999999987 9999999999999999999999999999999999998763
No 40
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=8.2e-21 Score=147.34 Aligned_cols=109 Identities=28% Similarity=0.488 Sum_probs=75.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeecC
Q 016188 116 EHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAAT 195 (394)
Q Consensus 116 ~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a~ 195 (394)
..+|||+|||+++++++|+++| +.||.|.+|+|+.+. +.++|||||+|.+.++|++|++.|++..+.|+.|.|.++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F-~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTF-SAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCEEEECCCCCCCCHHHHHHHH-hccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 5689999999999999999999 899999999999985 4589999999999999999999999999999999999987
Q ss_pred CCCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCCCHHH
Q 016188 196 PKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEE 249 (394)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~ 249 (394)
++....... .......++|||+|||+++|++.
T Consensus 82 ~~~~~~~~~----------------------~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 82 SRKEREAEL----------------------GARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCCC--------------------------------------------------
T ss_pred Ccccccccc----------------------ccccCCCCceEeCCCCCCccccc
Confidence 665432111 11122346799999999998763
No 41
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=5.7e-21 Score=148.25 Aligned_cols=106 Identities=22% Similarity=0.364 Sum_probs=69.9
Q ss_pred cceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeeeecc
Q 016188 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWA 102 (394)
Q Consensus 23 ~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~~~~ 102 (394)
..+|||+|||+++++++|+++|++||.|.+|+|+++. +.++|||||+|.+.++|.+|++.|++..|.++.+.| .++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V--~~a 80 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV--GRF 80 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE--EES
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEE--EEC
Confidence 4689999999999999999999999999999999986 457899999999999999999999999999965544 444
Q ss_pred cCCCCC---CCCCCCCcceEEEcCCCCCCCHHH
Q 016188 103 SFGIGE---KRPDAGPEHSIFVGDLAPDVTDYL 132 (394)
Q Consensus 103 ~~~~~~---~~~~~~~~~~l~v~nlp~~~t~~~ 132 (394)
...... ........++|||+|||+++|++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 81 KSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp SCCCC----------------------------
T ss_pred CCccccccccccccCCCCceEeCCCCCCccccc
Confidence 332211 112233456799999999999864
No 42
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.82 E-value=4.7e-20 Score=150.34 Aligned_cols=127 Identities=24% Similarity=0.374 Sum_probs=108.9
Q ss_pred CCcceEEEEEcCHHHHHHHHHHc-CCCCCCCccceeeeecccCC-----------CCCCCCCCCCcceEEEcCCCCCCCH
Q 016188 63 QPEGYGFVEFVSHAAAERVLQTY-NGTPMPGTEQNFRLNWASFG-----------IGEKRPDAGPEHSIFVGDLAPDVTD 130 (394)
Q Consensus 63 ~~~g~afV~f~~~e~A~~a~~~l-~~~~~~~~~~~v~~~~~~~~-----------~~~~~~~~~~~~~l~v~nlp~~~t~ 130 (394)
+-+|+++|+|.+.++|++|++.+ ++..+.+ .+.+.++... .........+.++|||+|||+++++
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 87 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG---EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNK 87 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC---EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSC
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC---ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCH
Confidence 56799999999999999999999 9999998 4555554421 1122334456789999999999999
Q ss_pred HHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeecCCCC
Q 016188 131 YLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKK 198 (394)
Q Consensus 131 ~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a~~~~ 198 (394)
++|+++| +.||.|.++.++.+ ++|||||+|.+.++|..|++.|++..+.|+.|.|.++.++.
T Consensus 88 ~~l~~~F-~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 88 TELERAF-GYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHH-HHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHH-HhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 9999999 89999999999876 58999999999999999999999999999999999997653
No 43
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=135.61 Aligned_cols=80 Identities=30% Similarity=0.551 Sum_probs=77.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeecC
Q 016188 116 EHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAAT 195 (394)
Q Consensus 116 ~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a~ 195 (394)
.++|||+|||+++|+++|+++| +.||.|.++.+++++.+|+++|||||+|.+.++|++|++.||+..+.|+.|.|.++.
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F-~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLF-SSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHH-HTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHH-HhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 5789999999999999999999 899999999999999999999999999999999999999999999999999999986
Q ss_pred C
Q 016188 196 P 196 (394)
Q Consensus 196 ~ 196 (394)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 4
No 44
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.3e-19 Score=135.89 Aligned_cols=82 Identities=18% Similarity=0.350 Sum_probs=75.3
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCC--ceeCcEEEEEEEcccC
Q 016188 230 DITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQG--HMIGQQQVRISWGRKQ 307 (394)
Q Consensus 230 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g--~~~~g~~l~v~~a~~~ 307 (394)
....++|||+|||+.+|+++|+++|++||.|.++.|+++||||||+|.+.++|.+|++.|++ ..|.|++|+|.+++++
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~ 92 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 92 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCC
Confidence 34568999999999999999999999999999999999999999999999999999998864 7899999999999877
Q ss_pred CCCC
Q 016188 308 DVTG 311 (394)
Q Consensus 308 ~~~~ 311 (394)
....
T Consensus 93 ~~~~ 96 (105)
T 1sjq_A 93 ELKT 96 (105)
T ss_dssp SCCC
T ss_pred CCCc
Confidence 6543
No 45
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.80 E-value=3.8e-19 Score=132.03 Aligned_cols=79 Identities=18% Similarity=0.243 Sum_probs=74.0
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCce--eCcEEEEEEEcccC
Q 016188 230 DITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHM--IGQQQVRISWGRKQ 307 (394)
Q Consensus 230 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~--~~g~~l~v~~a~~~ 307 (394)
..++++|||+|||+.+|+++|+++|++||.|.++.++++||+|||+|.+.++|.+|+..|++.. |+|++|.|.+++++
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecccc
Confidence 3456899999999999999999999999999999999999999999999999999999999875 88999999999876
Q ss_pred C
Q 016188 308 D 308 (394)
Q Consensus 308 ~ 308 (394)
.
T Consensus 98 ~ 98 (100)
T 3r27_A 98 K 98 (100)
T ss_dssp C
T ss_pred c
Confidence 5
No 46
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.80 E-value=3e-19 Score=134.27 Aligned_cols=75 Identities=29% Similarity=0.536 Sum_probs=70.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcc
Q 016188 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (394)
Q Consensus 232 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 305 (394)
..++|||+|||.++|+++|+++|++||.|.++.|.++ +|||||+|.+.++|.+|++.|||..|+|+.|+|+||+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 4578999999999999999999999999999999865 5899999999999999999999999999999999997
Q ss_pred c
Q 016188 306 K 306 (394)
Q Consensus 306 ~ 306 (394)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 5
No 47
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.79 E-value=5e-19 Score=145.27 Aligned_cols=79 Identities=28% Similarity=0.486 Sum_probs=73.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEc
Q 016188 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWG 304 (394)
Q Consensus 231 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 304 (394)
...++|||+|||..+|+++|+++|++||.|.+|.|+.+ ++||||+|.+.++|.+|++.||+..|+|+.|+|+|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999999765 589999999999999999999999999999999999
Q ss_pred ccCCC
Q 016188 305 RKQDV 309 (394)
Q Consensus 305 ~~~~~ 309 (394)
++...
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 87543
No 48
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.79 E-value=4.2e-19 Score=126.74 Aligned_cols=74 Identities=12% Similarity=0.297 Sum_probs=71.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcc
Q 016188 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (394)
Q Consensus 232 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 305 (394)
....|+|+||++.+|+++|+++|.+||+|.++.+..+||||||+|.+.++|.+|++.||+..+.|++|+|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999985
No 49
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.2e-18 Score=129.47 Aligned_cols=80 Identities=19% Similarity=0.324 Sum_probs=74.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHh--CCceeCcEEEEEEEcccCC
Q 016188 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRM--QGHMIGQQQVRISWGRKQD 308 (394)
Q Consensus 231 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l--~g~~~~g~~l~v~~a~~~~ 308 (394)
.+.++|||+|||+.+++++|+++|++||.|.++.++++||||||+|.+.++|.+|++.| ++..|.|+.|.|.|++++.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~ 92 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKE 92 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCccc
Confidence 45689999999999999999999999999999999999999999999999999999977 4678999999999999776
Q ss_pred CC
Q 016188 309 VT 310 (394)
Q Consensus 309 ~~ 310 (394)
..
T Consensus 93 ~~ 94 (101)
T 2cq1_A 93 LK 94 (101)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 50
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.5e-18 Score=131.23 Aligned_cols=81 Identities=22% Similarity=0.262 Sum_probs=74.2
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCc--eeCcEEEEEEEcccC
Q 016188 230 DITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGH--MIGQQQVRISWGRKQ 307 (394)
Q Consensus 230 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~--~~~g~~l~v~~a~~~ 307 (394)
..+.++|||+|||+.+++++|+++|++||.|.+|.++++||||||+|.+.++|.+|++.|++. .|+|++|+|.|++.+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~ 91 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSK 91 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCc
Confidence 345689999999999999999999999999999999999999999999999999999998765 499999999999876
Q ss_pred CCC
Q 016188 308 DVT 310 (394)
Q Consensus 308 ~~~ 310 (394)
...
T Consensus 92 ~~~ 94 (104)
T 1wex_A 92 RIT 94 (104)
T ss_dssp SCC
T ss_pred ccc
Confidence 543
No 51
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.78 E-value=2.9e-19 Score=132.23 Aligned_cols=83 Identities=16% Similarity=0.306 Sum_probs=76.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhhCC-CeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhC-CeeecCcceEEee
Q 016188 116 EHSIFVGDLAPDVTDYLLQETFRSQYP-SVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMN-GVFCSTRPMRISA 193 (394)
Q Consensus 116 ~~~l~v~nlp~~~t~~~l~~~f~~~~G-~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~-~~~~~g~~l~v~~ 193 (394)
+++|||+|||+++|+++|+++| +.|| .|.+|++++++.+|+++|||||+|.+.++|++|++.++ +..+.|+.|.|.+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F-~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQL-QSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHH-HHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHH-HHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 4789999999999999999999 8999 89999999999999999999999999999999998874 5679999999999
Q ss_pred cCCCCC
Q 016188 194 ATPKKT 199 (394)
Q Consensus 194 a~~~~~ 199 (394)
+.++..
T Consensus 80 a~~~~~ 85 (91)
T 2lxi_A 80 SDPKPK 85 (91)
T ss_dssp CCSCCC
T ss_pred cCCCCC
Confidence 987654
No 52
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.78 E-value=1.5e-18 Score=132.97 Aligned_cols=84 Identities=13% Similarity=0.212 Sum_probs=79.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEee
Q 016188 114 GPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISA 193 (394)
Q Consensus 114 ~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~ 193 (394)
.+.++|||+|||+++++++|+++| ++||.|.++.|+.|+.|++++|||||+|.+.++|++|++.||+..+.|+.|.|.+
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F-~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMC-RKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHH-TTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHH-HhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 457899999999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 016188 194 ATPKK 198 (394)
Q Consensus 194 a~~~~ 198 (394)
+....
T Consensus 83 a~~~~ 87 (110)
T 3s8s_A 83 DIKGQ 87 (110)
T ss_dssp CSTTH
T ss_pred CCCCc
Confidence 86553
No 53
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.78 E-value=3.8e-19 Score=141.77 Aligned_cols=126 Identities=21% Similarity=0.337 Sum_probs=84.0
Q ss_pred ceEEEEEcCHHHHHHHHHHcCCCCCCCccceeeeecccCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCee
Q 016188 66 GYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVR 145 (394)
Q Consensus 66 g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~ 145 (394)
-++|+++.++..+..|++.+++....+... ..+ ........+.++|||+|||+++++++|+++| +.||.|.
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~---~~~-----~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F-~~~G~i~ 75 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS---MSY-----GRPPPDVEGMTSLKVDNLTYRTSPDTLRRVF-EKYGRVG 75 (135)
T ss_dssp ---------------------------------CCS-----CCSCSSGGGCCCEEEECCCSSCHHHHHHHHH-GGGSCCS
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC---CCc-----CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCEE
Confidence 357888899999999999888876655331 111 2223444567899999999999999999999 8999999
Q ss_pred EEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeecCCCCCc
Q 016188 146 GAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTT 200 (394)
Q Consensus 146 ~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a~~~~~~ 200 (394)
.|.++.++.+++++|||||+|.+.++|++|++.|++..+.|+.|.|.++.+....
T Consensus 76 ~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 76 DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp EEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 9999999889999999999999999999999999999999999999999876543
No 54
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.78 E-value=4.6e-18 Score=129.14 Aligned_cols=79 Identities=29% Similarity=0.489 Sum_probs=73.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccCCCC
Q 016188 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVT 310 (394)
Q Consensus 231 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~ 310 (394)
.+.++|||+|||..+|+++|+++|++||.|.++.++ ++||||+|.+.++|.+|++.||+..|+|+.|+|.+++++...
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 86 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQK 86 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCccc
Confidence 456899999999999999999999999999999998 679999999999999999999999999999999999977654
Q ss_pred C
Q 016188 311 G 311 (394)
Q Consensus 311 ~ 311 (394)
.
T Consensus 87 ~ 87 (103)
T 2dgu_A 87 R 87 (103)
T ss_dssp C
T ss_pred c
Confidence 3
No 55
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1e-18 Score=131.12 Aligned_cols=78 Identities=19% Similarity=0.195 Sum_probs=72.4
Q ss_pred CCccEEEEcCCCC-CCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCc--eeCcEEEEEEEcccC
Q 016188 231 ITNTTIFVGNLDP-NVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGH--MIGQQQVRISWGRKQ 307 (394)
Q Consensus 231 ~~~~~l~v~nl~~-~~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~--~~~g~~l~v~~a~~~ 307 (394)
.+.++|||+|||+ .+|+++|+++|++||.|.++.|+++++||||+|.+.++|.+|++.||+. .|.|++|.|.+++..
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 3568999999999 9999999999999999999999999999999999999999999999864 599999999999854
Q ss_pred C
Q 016188 308 D 308 (394)
Q Consensus 308 ~ 308 (394)
.
T Consensus 93 ~ 93 (102)
T 1x4d_A 93 K 93 (102)
T ss_dssp T
T ss_pred C
Confidence 3
No 56
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.6e-18 Score=133.40 Aligned_cols=81 Identities=19% Similarity=0.354 Sum_probs=74.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCC--ceeCcEEEEEEEcccCC
Q 016188 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQG--HMIGQQQVRISWGRKQD 308 (394)
Q Consensus 231 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g--~~~~g~~l~v~~a~~~~ 308 (394)
.+.++|||+|||+.+|+++|+++|++||.|.+|.|+++||||||+|.+.++|.+|++.|++ ..|.|++|+|.+++++.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~ 108 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKE 108 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCC
Confidence 4568999999999999999999999999999999999999999999999999999999884 57999999999999876
Q ss_pred CCC
Q 016188 309 VTG 311 (394)
Q Consensus 309 ~~~ 311 (394)
...
T Consensus 109 ~~~ 111 (119)
T 2ad9_A 109 LKT 111 (119)
T ss_dssp CCC
T ss_pred CCc
Confidence 553
No 57
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=3.6e-18 Score=128.21 Aligned_cols=80 Identities=24% Similarity=0.503 Sum_probs=75.3
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCceeC--cEEEEEEEcccC
Q 016188 230 DITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIG--QQQVRISWGRKQ 307 (394)
Q Consensus 230 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~--g~~l~v~~a~~~ 307 (394)
..+.++|||+|||..+++++|+++|++||.|.++.+..+++||||+|.+.++|++|++.||+..|. |+.|+|++++++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~ 93 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSG 93 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCC
Confidence 345689999999999999999999999999999999999999999999999999999999999999 999999999987
Q ss_pred CC
Q 016188 308 DV 309 (394)
Q Consensus 308 ~~ 309 (394)
..
T Consensus 94 ~~ 95 (97)
T 1why_A 94 PS 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 58
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.1e-17 Score=128.04 Aligned_cols=78 Identities=15% Similarity=0.305 Sum_probs=73.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCceeCc-----EEEEEEEcc
Q 016188 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQ-----QQVRISWGR 305 (394)
Q Consensus 231 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g-----~~l~v~~a~ 305 (394)
...++|||+|||..+++++|+++|++||.|.++.|+.+ +||||+|.+.++|++|++.||+..|.| +.|+|++++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~ 91 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 91 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCC
Confidence 45689999999999999999999999999999999988 999999999999999999999999999 999999999
Q ss_pred cCCC
Q 016188 306 KQDV 309 (394)
Q Consensus 306 ~~~~ 309 (394)
++..
T Consensus 92 ~~~~ 95 (108)
T 1x4c_A 92 PRSP 95 (108)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 8653
No 59
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.76 E-value=1.2e-18 Score=129.51 Aligned_cols=83 Identities=16% Similarity=0.338 Sum_probs=76.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhhCCC--eeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCe----eecC
Q 016188 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPS--VRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGV----FCST 186 (394)
Q Consensus 113 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~--v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~----~~~g 186 (394)
...-++|||+|||+++|+++|+++| +.||. |.+|++++|+.||+++|||||+|.+.++|++|++.||+. .++|
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F-~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTAL-SPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHS-TTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHH-HhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 3457899999999999999999999 89995 679999999999999999999999999999999999986 4899
Q ss_pred cceEEeecCC
Q 016188 187 RPMRISAATP 196 (394)
Q Consensus 187 ~~l~v~~a~~ 196 (394)
|.|.|.+|..
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999864
No 60
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.3e-17 Score=126.73 Aligned_cols=83 Identities=25% Similarity=0.498 Sum_probs=76.6
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC----CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEE
Q 016188 228 DNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG----RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISW 303 (394)
Q Consensus 228 ~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 303 (394)
......++|||+|||..+++++|+++|++||.|.+|.|..+ +++|||+|.+.++|.+|+..||+..|+|+.|+|.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34456799999999999999999999999999999999876 78999999999999999999999999999999999
Q ss_pred cccCCCC
Q 016188 304 GRKQDVT 310 (394)
Q Consensus 304 a~~~~~~ 310 (394)
++++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cq3_A 90 ATARVMT 96 (103)
T ss_dssp CCSSCCC
T ss_pred cccCCCC
Confidence 9987654
No 61
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.76 E-value=1.4e-17 Score=129.28 Aligned_cols=82 Identities=33% Similarity=0.694 Sum_probs=75.5
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEE
Q 016188 229 NDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRIS 302 (394)
Q Consensus 229 ~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 302 (394)
.....++|||+|||..+++++|+++|+.||.|.+|.|+.+ +|||||+|.+.++|.+|++.||+..|+|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3446789999999999999999999999999999999876 5899999999999999999999999999999999
Q ss_pred EcccCCCC
Q 016188 303 WGRKQDVT 310 (394)
Q Consensus 303 ~a~~~~~~ 310 (394)
+++++...
T Consensus 91 ~a~~~~~~ 98 (115)
T 2dgo_A 91 WATRKPPA 98 (115)
T ss_dssp ESSCCCCC
T ss_pred EccCCCCC
Confidence 99977544
No 62
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.76 E-value=1.2e-17 Score=129.51 Aligned_cols=91 Identities=34% Similarity=0.641 Sum_probs=84.4
Q ss_pred CCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcc
Q 016188 109 KRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRP 188 (394)
Q Consensus 109 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~ 188 (394)
......+.++|||+|||+++++++|+++| +.||.|..|.++.++.+++++|||||+|.+.++|++|++.|++..+.|+.
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (115)
T 2dgo_A 8 QKKDTSNHFHVFVGDLSPEITTEDIKAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 86 (115)
T ss_dssp SCCCSTTCEEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 34455678999999999999999999999 89999999999999889999999999999999999999999999999999
Q ss_pred eEEeecCCCCCc
Q 016188 189 MRISAATPKKTT 200 (394)
Q Consensus 189 l~v~~a~~~~~~ 200 (394)
|.|.++.++...
T Consensus 87 l~V~~a~~~~~~ 98 (115)
T 2dgo_A 87 IRTNWATRKPPA 98 (115)
T ss_dssp CEEEESSCCCCC
T ss_pred EEEEEccCCCCC
Confidence 999999877654
No 63
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.3e-18 Score=129.79 Aligned_cols=81 Identities=28% Similarity=0.591 Sum_probs=76.3
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccCCC
Q 016188 230 DITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDV 309 (394)
Q Consensus 230 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 309 (394)
....++|||+|||..+++++|+++|++||.|.+|.|..+++||||+|.+.++|.+|+..|||..|+|+.|+|.|++++..
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred C
Q 016188 310 T 310 (394)
Q Consensus 310 ~ 310 (394)
.
T Consensus 102 ~ 102 (109)
T 1x4g_A 102 M 102 (109)
T ss_dssp S
T ss_pred C
Confidence 3
No 64
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7.7e-18 Score=126.07 Aligned_cols=79 Identities=19% Similarity=0.267 Sum_probs=73.9
Q ss_pred CCccEEEEcCCCCCCCHHHHH----HHhcccCCeEEEEEeCC---CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEE
Q 016188 231 ITNTTIFVGNLDPNVTEEELK----QTFLHFGEIVNVKIPMG---RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISW 303 (394)
Q Consensus 231 ~~~~~l~v~nl~~~~t~~~l~----~~F~~~G~i~~~~i~~~---~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 303 (394)
.+.++|||+|||..+++++|+ ++|++||.|.++.|+.+ ++||||+|.+.++|.+|++.|||..|+|+.|+|++
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 355899999999999999999 99999999999999876 89999999999999999999999999999999999
Q ss_pred cccCCC
Q 016188 304 GRKQDV 309 (394)
Q Consensus 304 a~~~~~ 309 (394)
++++..
T Consensus 87 a~~~~~ 92 (96)
T 2dgx_A 87 ATGASG 92 (96)
T ss_dssp CCCSSC
T ss_pred cCCCCC
Confidence 987654
No 65
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=7e-18 Score=127.17 Aligned_cols=80 Identities=29% Similarity=0.526 Sum_probs=75.5
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccCCC
Q 016188 230 DITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDV 309 (394)
Q Consensus 230 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 309 (394)
..+.++|||+|||..+++++|+++|++||.|.++.+.++++||||+|.+.++|.+|++.||+..|+|+.|+|.+++++..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSAS 91 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCCC
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999987653
No 66
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.7e-17 Score=127.43 Aligned_cols=81 Identities=22% Similarity=0.461 Sum_probs=74.6
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC---CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcc
Q 016188 229 NDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG---RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (394)
Q Consensus 229 ~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~---~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 305 (394)
.....++|||+|||..+++++|+++|++||.|.++.|..+ ++||||+|.+.++|.+|++.||+..|+|+.|+|++++
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 3456789999999999999999999999999999999775 6899999999999999999999999999999999998
Q ss_pred cCCC
Q 016188 306 KQDV 309 (394)
Q Consensus 306 ~~~~ 309 (394)
++..
T Consensus 98 ~~~~ 101 (109)
T 1x4a_A 98 SGRG 101 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7653
No 67
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.75 E-value=3.5e-18 Score=130.94 Aligned_cols=80 Identities=20% Similarity=0.236 Sum_probs=74.1
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeeee
Q 016188 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLN 100 (394)
Q Consensus 21 ~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~~ 100 (394)
.+.++|||+|||+++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++|++.||+..+.++.+.|.+.
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46789999999999999999999999999999999999988999999999999999999999999999999966555443
No 68
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.3e-17 Score=126.00 Aligned_cols=81 Identities=17% Similarity=0.442 Sum_probs=74.9
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-----CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEE
Q 016188 229 NDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG-----RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISW 303 (394)
Q Consensus 229 ~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 303 (394)
.....++|||+|||..+++++|+++|++||.|.++.|..+ +|+|||+|.+.++|.+|++.||+..|+|+.|+|.+
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456689999999999999999999999999999999875 48999999999999999999999999999999999
Q ss_pred cccCCC
Q 016188 304 GRKQDV 309 (394)
Q Consensus 304 a~~~~~ 309 (394)
++++..
T Consensus 93 a~~~~~ 98 (100)
T 2do4_A 93 SNSGPS 98 (100)
T ss_dssp CCCCSC
T ss_pred CCCCCC
Confidence 988754
No 69
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1e-17 Score=126.24 Aligned_cols=80 Identities=21% Similarity=0.392 Sum_probs=74.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEc
Q 016188 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWG 304 (394)
Q Consensus 231 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 304 (394)
...++|||+|||..+++++|+++|++||.|.++.|..+ +|||||+|.+.++|.+|+..||+..|+|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45689999999999999999999999999999999875 499999999999999999999999999999999999
Q ss_pred ccCCCC
Q 016188 305 RKQDVT 310 (394)
Q Consensus 305 ~~~~~~ 310 (394)
+++...
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 987653
No 70
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=6e-18 Score=126.28 Aligned_cols=84 Identities=20% Similarity=0.341 Sum_probs=75.1
Q ss_pred CCCCCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCcc
Q 016188 15 HHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTE 94 (394)
Q Consensus 15 ~~~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~ 94 (394)
.......+.++|||+|||+++++++|+++|++||.|.+|+++.++.++++++||||+|.+.++|.+|++.|++..+.++.
T Consensus 8 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 87 (94)
T 2e5h_A 8 MSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRV 87 (94)
T ss_dssp CCCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEE
T ss_pred CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 33445567789999999999999999999999999999999999888999999999999999999999999999999855
Q ss_pred ceee
Q 016188 95 QNFR 98 (394)
Q Consensus 95 ~~v~ 98 (394)
+.|.
T Consensus 88 l~v~ 91 (94)
T 2e5h_A 88 IKAS 91 (94)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 71
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=2e-17 Score=128.09 Aligned_cols=81 Identities=27% Similarity=0.375 Sum_probs=74.5
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-----CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEc
Q 016188 230 DITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG-----RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWG 304 (394)
Q Consensus 230 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 304 (394)
....++|||+|||..+++++|+++|++||.|.++.|..+ ++||||+|.+.++|.+|+..||+..|+|+.|+|+++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 345689999999999999999999999999999999876 689999999999999999999999999999999999
Q ss_pred ccCCCC
Q 016188 305 RKQDVT 310 (394)
Q Consensus 305 ~~~~~~ 310 (394)
+....+
T Consensus 92 ~~~~~~ 97 (114)
T 2do0_A 92 ERALPK 97 (114)
T ss_dssp SCCCCC
T ss_pred ccCCCC
Confidence 865544
No 72
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.1e-17 Score=125.45 Aligned_cols=82 Identities=28% Similarity=0.434 Sum_probs=75.4
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC----CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEc
Q 016188 229 NDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG----RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWG 304 (394)
Q Consensus 229 ~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 304 (394)
.....++|||+|||..+++++|+++|++||.|.+|.|..+ ++||||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 3445699999999999999999999999999999999874 689999999999999999999999999999999999
Q ss_pred ccCCCC
Q 016188 305 RKQDVT 310 (394)
Q Consensus 305 ~~~~~~ 310 (394)
+++..+
T Consensus 91 ~~~~~~ 96 (103)
T 2cqi_A 91 TTPSSQ 96 (103)
T ss_dssp CCTTCC
T ss_pred CCCccc
Confidence 986543
No 73
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=5e-18 Score=124.18 Aligned_cols=76 Identities=36% Similarity=0.704 Sum_probs=72.3
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHh-CCceeCcEEEEEEEcc
Q 016188 230 DITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRM-QGHMIGQQQVRISWGR 305 (394)
Q Consensus 230 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l-~g~~~~g~~l~v~~a~ 305 (394)
....++|||+|||..+++++|+++|++||.|.++.+.+++|+|||+|.+.++|.+|+..| ++..++|+.|+|+|++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 345689999999999999999999999999999999999999999999999999999999 9999999999999985
No 74
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.75 E-value=4.4e-18 Score=140.83 Aligned_cols=130 Identities=16% Similarity=0.233 Sum_probs=80.9
Q ss_pred EEEcCHHHHHHHHHHcCCCCCCCccceeeeecccCC---------------CCCCCCCCCCcceEEEcCCCCCCCHHHHH
Q 016188 70 VEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWASFG---------------IGEKRPDAGPEHSIFVGDLAPDVTDYLLQ 134 (394)
Q Consensus 70 V~f~~~e~A~~a~~~l~~~~~~~~~~~v~~~~~~~~---------------~~~~~~~~~~~~~l~v~nlp~~~t~~~l~ 134 (394)
.+|.+.++|..++..|++.....+.......+.... ....+....+.++|||+|||+.+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 689999999999999888766533333333321110 11122334567889999999999999999
Q ss_pred HHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeecCCCCCc
Q 016188 135 ETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTT 200 (394)
Q Consensus 135 ~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a~~~~~~ 200 (394)
++| +.||.|..|.|+.++.+|.++|||||+|.+.++|..|+..|++..|.|+.|.|.++.++...
T Consensus 91 ~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 155 (165)
T 1rk8_A 91 EKF-CDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPK 155 (165)
T ss_dssp HHH-GGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC--
T ss_pred HHh-hcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCC
Confidence 999 89999999999999999999999999999999999999999999999999999999766543
No 75
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=9e-18 Score=124.19 Aligned_cols=78 Identities=22% Similarity=0.467 Sum_probs=73.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccCCCC
Q 016188 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVT 310 (394)
Q Consensus 231 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~ 310 (394)
...++|||+|||..+++++|+++|++||.|.++.+. ++||||+|.+.++|.+|+..||+..|+|+.|+|++++++...
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 83 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSKA 83 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCCC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCCC
Confidence 456899999999999999999999999999999999 899999999999999999999999999999999999887643
No 76
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.75 E-value=1.7e-18 Score=128.12 Aligned_cols=76 Identities=20% Similarity=0.301 Sum_probs=69.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcccC-CeEEEEEeCC------CcEEEEEeCchHHHHHHHHHhC-CceeCcEEEEEEEcc
Q 016188 234 TTIFVGNLDPNVTEEELKQTFLHFG-EIVNVKIPMG------RGCGFVQFAARASAEEAILRMQ-GHMIGQQQVRISWGR 305 (394)
Q Consensus 234 ~~l~v~nl~~~~t~~~l~~~F~~~G-~i~~~~i~~~------~g~~fV~f~~~~~a~~a~~~l~-g~~~~g~~l~v~~a~ 305 (394)
++|||+|||.++|+++|+++|++|| .|.+|+|+++ +|||||+|.+.++|.+|++.++ +..|+|++|+|++|.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 6899999999999999999999999 8999999764 6999999999999999999875 567999999999998
Q ss_pred cCCC
Q 016188 306 KQDV 309 (394)
Q Consensus 306 ~~~~ 309 (394)
++..
T Consensus 82 ~~~~ 85 (91)
T 2lxi_A 82 PKPK 85 (91)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7654
No 77
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.75 E-value=9.2e-18 Score=130.15 Aligned_cols=80 Identities=25% Similarity=0.430 Sum_probs=74.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-----CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcc
Q 016188 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG-----RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (394)
Q Consensus 231 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 305 (394)
...++|||+|||..+++++|+++|++||.|.+|.|..+ +|||||+|.+.++|++|++.|||..|+|+.|+|++++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 34589999999999999999999999999999999886 4999999999999999999999999999999999998
Q ss_pred cCCCC
Q 016188 306 KQDVT 310 (394)
Q Consensus 306 ~~~~~ 310 (394)
++...
T Consensus 85 ~~~~~ 89 (116)
T 2fy1_A 85 KPSFQ 89 (116)
T ss_dssp CSSCS
T ss_pred CCCCC
Confidence 76543
No 78
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.75 E-value=1.6e-17 Score=128.79 Aligned_cols=86 Identities=24% Similarity=0.316 Sum_probs=76.7
Q ss_pred CCCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccce
Q 016188 17 PMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQN 96 (394)
Q Consensus 17 ~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~ 96 (394)
.....+.++|||+|||+++++++|+++|++||.|.+|+|++++.++++++||||+|.+.++|.+|++.|++..|.++ .
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~ 96 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMK--R 96 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE--E
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCE--E
Confidence 34556778999999999999999999999999999999999988899999999999999999999999999999985 4
Q ss_pred eeeecccC
Q 016188 97 FRLNWASF 104 (394)
Q Consensus 97 v~~~~~~~ 104 (394)
+++.++..
T Consensus 97 l~V~~a~~ 104 (115)
T 2cpz_A 97 LKVQLKRS 104 (115)
T ss_dssp CEEECCCC
T ss_pred EEEEEcCC
Confidence 55555544
No 79
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=2e-17 Score=122.82 Aligned_cols=78 Identities=22% Similarity=0.420 Sum_probs=72.9
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccCCC
Q 016188 230 DITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDV 309 (394)
Q Consensus 230 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 309 (394)
....++|||+|||..+++++|+++|++||.|.++.+. +++|||+|.+.++|.+|+..||+..|.|+.|+|++++++..
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 84 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 84 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCCC
Confidence 4456999999999999999999999999999999998 55999999999999999999999999999999999987654
No 80
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.75 E-value=1.9e-18 Score=128.41 Aligned_cols=86 Identities=19% Similarity=0.320 Sum_probs=75.4
Q ss_pred CCCCcCCcceEEEcCCCCcCCHHHHHHHHhhcCC--ceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCC----
Q 016188 16 HPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGE--VVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTP---- 89 (394)
Q Consensus 16 ~~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~--v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~---- 89 (394)
+........+|||+|||+++|+++|+++|++||. |.+|++++++.+|+++|||||+|.+.++|.+|++.|++..
T Consensus 2 g~~~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~ 81 (95)
T 2lkz_A 2 GHHHHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLK 81 (95)
T ss_dssp CCCSSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEE
T ss_pred CcccCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCce
Confidence 3456678899999999999999999999999995 6799999999899999999999999999999999999874
Q ss_pred CCCccceeeeeccc
Q 016188 90 MPGTEQNFRLNWAS 103 (394)
Q Consensus 90 ~~~~~~~v~~~~~~ 103 (394)
+.| ..+.++++.
T Consensus 82 i~G--r~i~V~~Ak 93 (95)
T 2lkz_A 82 IDG--KTIGVDFAK 93 (95)
T ss_dssp ETT--EEEEEEECC
T ss_pred ECC--EEEEEEEcc
Confidence 566 556666654
No 81
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.75 E-value=9.6e-18 Score=122.05 Aligned_cols=75 Identities=33% Similarity=0.646 Sum_probs=71.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccC
Q 016188 234 TTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307 (394)
Q Consensus 234 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 307 (394)
.+|||+|||..+++++|+++|++||.|.++.++.+ +|+|||+|.+.++|.+|+..|||..++|+.|+|++++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 68999999999999999999999999999999866 789999999999999999999999999999999999876
Q ss_pred C
Q 016188 308 D 308 (394)
Q Consensus 308 ~ 308 (394)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 82
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.74 E-value=8.9e-18 Score=123.39 Aligned_cols=83 Identities=37% Similarity=0.703 Sum_probs=76.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEee
Q 016188 114 GPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISA 193 (394)
Q Consensus 114 ~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~ 193 (394)
.+.++|||+|||.++++++|+++| +.||.|..+.++.++.+++++|||||+|.+.++|+.|++.|++..+.|+.|.|.+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHH-HhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 357899999999999999999999 8999999999999988999999999999999999999999999999999999999
Q ss_pred cCCC
Q 016188 194 ATPK 197 (394)
Q Consensus 194 a~~~ 197 (394)
+.++
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 8764
No 83
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2.5e-17 Score=124.35 Aligned_cols=87 Identities=20% Similarity=0.403 Sum_probs=80.9
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceE
Q 016188 111 PDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190 (394)
Q Consensus 111 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~ 190 (394)
....+.++|||+|||+++++++|+++| +.||.|..+.++.++ +++++|||||+|.+.++|++|++.|++..+.|+.|.
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 89 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEIC-KAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIK 89 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHH-TTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHH-HhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 344567899999999999999999999 899999999999998 899999999999999999999999999999999999
Q ss_pred EeecCCCCC
Q 016188 191 ISAATPKKT 199 (394)
Q Consensus 191 v~~a~~~~~ 199 (394)
|.++.++..
T Consensus 90 v~~a~~~~~ 98 (100)
T 2do4_A 90 VAISNSGPS 98 (100)
T ss_dssp EEECCCCSC
T ss_pred EEECCCCCC
Confidence 999987654
No 84
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.74 E-value=7.7e-18 Score=133.00 Aligned_cols=86 Identities=17% Similarity=0.298 Sum_probs=77.1
Q ss_pred CCCCCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCcc
Q 016188 15 HHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTE 94 (394)
Q Consensus 15 ~~~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~ 94 (394)
.....+++.++|||+|||+++++++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++|++.|++..|.++.
T Consensus 38 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~ 117 (129)
T 2kxn_B 38 GNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 117 (129)
T ss_dssp CCSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 34556778899999999999999999999999999999999999888999999999999999999999999999999865
Q ss_pred ceeeee
Q 016188 95 QNFRLN 100 (394)
Q Consensus 95 ~~v~~~ 100 (394)
+.|...
T Consensus 118 l~V~~a 123 (129)
T 2kxn_B 118 IRVDFS 123 (129)
T ss_dssp CEESCC
T ss_pred EEEEEe
Confidence 544443
No 85
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.7e-17 Score=124.07 Aligned_cols=86 Identities=31% Similarity=0.607 Sum_probs=81.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEee
Q 016188 114 GPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISA 193 (394)
Q Consensus 114 ~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~ 193 (394)
.+.++|||+|||+++++++|+++| +.||.|..+.++.++.+++++|||||+|.+.++|++|++.|++..+.|+.|.|.+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f-~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIF-EPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHH-TTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHH-HhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 457899999999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCc
Q 016188 194 ATPKKTT 200 (394)
Q Consensus 194 a~~~~~~ 200 (394)
+.++...
T Consensus 82 a~~~~~~ 88 (95)
T 2dnz_A 82 VTERLDG 88 (95)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 9877654
No 86
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-17 Score=126.77 Aligned_cols=81 Identities=27% Similarity=0.556 Sum_probs=75.0
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEE
Q 016188 230 DITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISW 303 (394)
Q Consensus 230 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 303 (394)
..+.++|||+|||..+++++|+++|++||.|.++.|+.+ +|||||+|.+.++|.+|++.||+..|+|+.|+|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 345689999999999999999999999999999999765 78999999999999999999999999999999999
Q ss_pred cccCCCC
Q 016188 304 GRKQDVT 310 (394)
Q Consensus 304 a~~~~~~ 310 (394)
++++..+
T Consensus 89 a~~~~~~ 95 (102)
T 2cqb_A 89 AKPMRIK 95 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9987654
No 87
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.7e-17 Score=125.11 Aligned_cols=87 Identities=24% Similarity=0.371 Sum_probs=81.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEe
Q 016188 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRIS 192 (394)
Q Consensus 113 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~ 192 (394)
..+.++|||+|||+++++++|+++| +.||.|..+.++.++.+++++|||||+|.+.++|++|++.|++..+.|+.|.|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLF-SAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHH-HTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4467899999999999999999999 899999999999999899999999999999999999999999999999999999
Q ss_pred ecCCCCCc
Q 016188 193 AATPKKTT 200 (394)
Q Consensus 193 ~a~~~~~~ 200 (394)
++.++...
T Consensus 84 ~a~~~~~~ 91 (99)
T 1whw_A 84 PSTIKKEA 91 (99)
T ss_dssp ECCCCSTT
T ss_pred EcCCCccc
Confidence 99877553
No 88
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2e-17 Score=126.07 Aligned_cols=86 Identities=30% Similarity=0.472 Sum_probs=76.8
Q ss_pred CCCCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccc
Q 016188 16 HPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQ 95 (394)
Q Consensus 16 ~~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~ 95 (394)
.+....+.++|||+|||+++++++|+++|++||.|.+|+++.++.+++++|||||+|.+.++|.+|++.|++..|.++.+
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (105)
T 1x5u_A 8 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPI 87 (105)
T ss_dssp CCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBC
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 34455678999999999999999999999999999999999998889999999999999999999999999999999554
Q ss_pred eeeeeccc
Q 016188 96 NFRLNWAS 103 (394)
Q Consensus 96 ~v~~~~~~ 103 (394)
.+.++.
T Consensus 88 --~v~~a~ 93 (105)
T 1x5u_A 88 --RVNKAS 93 (105)
T ss_dssp --EEEETT
T ss_pred --EEEECC
Confidence 445544
No 89
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=127.02 Aligned_cols=82 Identities=26% Similarity=0.562 Sum_probs=75.7
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC----CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEc
Q 016188 229 NDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG----RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWG 304 (394)
Q Consensus 229 ~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 304 (394)
.....++|||+|||..+++++|+++|++||.|.++.|..+ ++||||+|.+.++|.+|+..||+..|+|+.|+|.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 3446789999999999999999999999999999999865 799999999999999999999999999999999999
Q ss_pred ccCCCC
Q 016188 305 RKQDVT 310 (394)
Q Consensus 305 ~~~~~~ 310 (394)
+++..+
T Consensus 91 ~~~~~~ 96 (103)
T 2d9p_A 91 QRKEER 96 (103)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 987654
No 90
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=2e-17 Score=124.64 Aligned_cols=87 Identities=23% Similarity=0.457 Sum_probs=81.2
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEE
Q 016188 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191 (394)
Q Consensus 112 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v 191 (394)
...+.++|||+|||+++++++|+++| +.||.|..+.++.++.+++++|||||+|.+.++|++|++ +++..+.|+.|.|
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYF-KKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHH-SSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEE
Confidence 44568899999999999999999999 899999999999999999999999999999999999997 9999999999999
Q ss_pred eecCCCCCc
Q 016188 192 SAATPKKTT 200 (394)
Q Consensus 192 ~~a~~~~~~ 200 (394)
.++.++...
T Consensus 84 ~~a~~~~~~ 92 (99)
T 2dgs_A 84 KRAEPRDSK 92 (99)
T ss_dssp EECCCCCCC
T ss_pred EECCCCccc
Confidence 999877554
No 91
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.74 E-value=1.5e-17 Score=120.98 Aligned_cols=81 Identities=38% Similarity=0.651 Sum_probs=77.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeecCC
Q 016188 117 HSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATP 196 (394)
Q Consensus 117 ~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a~~ 196 (394)
.+|||+|||+++++++|+++| +.||.|.++.++.++.+++++|||||+|.+.++|+.|++.|++..+.|+.|.|.++.+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f-~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAF-KDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHH-TTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHH-HhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 589999999999999999999 8999999999999999999999999999999999999999999999999999999976
Q ss_pred CC
Q 016188 197 KK 198 (394)
Q Consensus 197 ~~ 198 (394)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 92
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.74 E-value=1.6e-17 Score=127.11 Aligned_cols=88 Identities=28% Similarity=0.598 Sum_probs=82.0
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcce
Q 016188 110 RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189 (394)
Q Consensus 110 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l 189 (394)
.....+.++|||+|||+++++++|+++| +.||.|..+.++.++.+|+++|||||+|.+.++|++|++.+++..+.|+.|
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 98 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIF-EPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 98 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHH-TTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 4455668999999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 016188 190 RISAATPKK 198 (394)
Q Consensus 190 ~v~~a~~~~ 198 (394)
.|.++.++.
T Consensus 99 ~V~~a~~k~ 107 (108)
T 2jrs_A 99 KVGHVTERT 107 (108)
T ss_dssp EEECSCSSC
T ss_pred EEEEcccCC
Confidence 999997653
No 93
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2e-17 Score=123.62 Aligned_cols=86 Identities=28% Similarity=0.448 Sum_probs=80.5
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcce
Q 016188 110 RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189 (394)
Q Consensus 110 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l 189 (394)
.....+.++|||+|||+++++++|+++| +.||.|..+.++.++.+++++|||||+|.+.++|.+|++.|++..+.|+.|
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f-~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLYTTERDLREVF-SKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87 (95)
T ss_dssp CCSCCGGGCEEEESCCSSCCHHHHHHHH-HTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHH-HhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 3445668899999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred EEeecCC
Q 016188 190 RISAATP 196 (394)
Q Consensus 190 ~v~~a~~ 196 (394)
.|.++.+
T Consensus 88 ~v~~a~~ 94 (95)
T 2cqc_A 88 RVSGPSS 94 (95)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 9999864
No 94
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.4e-17 Score=123.36 Aligned_cols=79 Identities=24% Similarity=0.414 Sum_probs=73.0
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhccc--CCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEccc
Q 016188 229 NDITNTTIFVGNLDPNVTEEELKQTFLHF--GEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRK 306 (394)
Q Consensus 229 ~~~~~~~l~v~nl~~~~t~~~l~~~F~~~--G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 306 (394)
.....++|||+|||..+++++|+++|++| |.|.++.+. ++||||+|.+.++|.+|+..|||..|+|+.|+|.++++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 88 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCC
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 34456899999999999999999999999 999999887 78999999999999999999999999999999999987
Q ss_pred CCC
Q 016188 307 QDV 309 (394)
Q Consensus 307 ~~~ 309 (394)
+..
T Consensus 89 ~~~ 91 (99)
T 2cpd_A 89 VDK 91 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 95
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.74 E-value=3.7e-18 Score=162.31 Aligned_cols=79 Identities=23% Similarity=0.421 Sum_probs=73.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEc
Q 016188 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWG 304 (394)
Q Consensus 231 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 304 (394)
...++|||+|||..+|+++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+||..|||..|+|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45689999999999999999999999999999999865 799999999999999999999999999999999999
Q ss_pred ccCCC
Q 016188 305 RKQDV 309 (394)
Q Consensus 305 ~~~~~ 309 (394)
.+...
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 97654
No 96
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-17 Score=127.04 Aligned_cols=86 Identities=22% Similarity=0.356 Sum_probs=77.0
Q ss_pred CCCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccce
Q 016188 17 PMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQN 96 (394)
Q Consensus 17 ~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~ 96 (394)
.....+.++|||+|||+++++++|+++|++||.|.+|+++.++.++++++||||+|.+.++|.+|++.|++..|.++.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-- 86 (103)
T 2cq0_A 9 NRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLI-- 86 (103)
T ss_dssp CCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEE--
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcE--
Confidence 345677899999999999999999999999999999999999888999999999999999999999999999999854
Q ss_pred eeeecccC
Q 016188 97 FRLNWASF 104 (394)
Q Consensus 97 v~~~~~~~ 104 (394)
+.+.++..
T Consensus 87 l~v~~a~~ 94 (103)
T 2cq0_A 87 LNVEWAKP 94 (103)
T ss_dssp CEEEESSC
T ss_pred EEEEECCC
Confidence 55555543
No 97
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8.2e-18 Score=126.07 Aligned_cols=79 Identities=34% Similarity=0.618 Sum_probs=73.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhcccCCeEEE-EEeCC------CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEc
Q 016188 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNV-KIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWG 304 (394)
Q Consensus 232 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~-~i~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 304 (394)
..++|||+|||..+++++|+++|++||.|.++ .|+.+ +|||||+|.+.++|.+|+..||+..|+|+.|+|+++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45899999999999999999999999999999 88875 689999999999999999999999999999999999
Q ss_pred ccCCCC
Q 016188 305 RKQDVT 310 (394)
Q Consensus 305 ~~~~~~ 310 (394)
+++..+
T Consensus 84 ~~~~~~ 89 (96)
T 1x5t_A 84 FKKDSK 89 (96)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 987644
No 98
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.74 E-value=1.5e-18 Score=138.35 Aligned_cols=119 Identities=24% Similarity=0.339 Sum_probs=75.3
Q ss_pred EEEEEeCCHHHHHHHHHhhCCeeecCcceEEeecCCCCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEEEcC
Q 016188 161 YGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGN 240 (394)
Q Consensus 161 ~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~n 240 (394)
+.|++|.+...+..|+..+++....++.- +.+.. ++......++|||+|
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~------------------------------~~~~~~~~~~l~V~n 54 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGR------------------------------PPPDVEGMTSLKVDN 54 (135)
T ss_dssp ------------------------------CCSCC------------------------------SCSSGGGCCCEEEEC
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCC-CCcCC------------------------------CCCCCCCCCEEEEeC
Confidence 56778888888888888777655443321 11110 112223458999999
Q ss_pred CCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccCCCC
Q 016188 241 LDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVT 310 (394)
Q Consensus 241 l~~~~t~~~l~~~F~~~G~i~~~~i~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~ 310 (394)
||..+++++|+++|++||.|.+|.|+.+ +|+|||+|.+.++|.+|+..||+..|+|+.|+|++++++..+
T Consensus 55 Lp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 55 LTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp CCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 9999999999999999999999999764 689999999999999999999999999999999999976544
No 99
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4e-17 Score=126.79 Aligned_cols=82 Identities=32% Similarity=0.454 Sum_probs=74.1
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEeCchHHHHHHHHHhCCceeCcEEEE
Q 016188 227 ADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVR 300 (394)
Q Consensus 227 ~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~ 300 (394)
.......++|||+|||..+++++|+++|++||.|.+|.|+.+ ++||||+|.+.++|++|++.+++ .|.|+.|+
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 334456799999999999999999999999999999999875 58999999999999999999998 89999999
Q ss_pred EEEcccCCC
Q 016188 301 ISWGRKQDV 309 (394)
Q Consensus 301 v~~a~~~~~ 309 (394)
|+++.....
T Consensus 90 V~~a~~~~~ 98 (116)
T 2cqd_A 90 VNLAYLGAK 98 (116)
T ss_dssp EEESTTTCC
T ss_pred EEEcccCCC
Confidence 999986543
No 100
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.74 E-value=9.2e-18 Score=138.89 Aligned_cols=137 Identities=15% Similarity=0.292 Sum_probs=74.4
Q ss_pred EEeCCHHHHHHHHHhhCCeeec--CcceEEeecCCCCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEEEcCC
Q 016188 164 VKFLDENERNRAMTEMNGVFCS--TRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNL 241 (394)
Q Consensus 164 V~f~~~e~a~~ai~~l~~~~~~--g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl 241 (394)
.+|.+.++|+.++..+++.... |+.+...+......... ... ...........+......++|||+||
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~----~~~------~~s~~~~~~~~~~~~~~~~~l~V~nL 80 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSY----ERV------RNEDDDELEPGPQRSVEGWILFVTSI 80 (165)
T ss_dssp -----------------------------------------------------------------CCCCC-CEEEEEESC
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCc----ccc------ccCCCCCCCCCCCCCCCCCEEEEeCC
Confidence 6899999999999888876543 55444443221110000 000 00000000111223445689999999
Q ss_pred CCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccCCCC
Q 016188 242 DPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVT 310 (394)
Q Consensus 242 ~~~~t~~~l~~~F~~~G~i~~~~i~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~ 310 (394)
|..+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.++...
T Consensus 81 p~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 155 (165)
T 1rk8_A 81 HEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPK 155 (165)
T ss_dssp CTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC--
T ss_pred CCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCC
Confidence 999999999999999999999999875 699999999999999999999999999999999999876544
No 101
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.74 E-value=1.4e-17 Score=124.73 Aligned_cols=85 Identities=27% Similarity=0.480 Sum_probs=80.5
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeec
Q 016188 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (394)
Q Consensus 115 ~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a 194 (394)
++++|||+|||.++++++|+++| +.||.|..+.++.++.+|+++|||||+|.+.++|++|++.|++..+.|+.|.|.++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 79 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLC-SNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYS 79 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHH-HTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHH-HhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEc
Confidence 46899999999999999999999 89999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCc
Q 016188 195 TPKKTT 200 (394)
Q Consensus 195 ~~~~~~ 200 (394)
.++...
T Consensus 80 ~~~~~~ 85 (96)
T 2x1f_A 80 SNSDIS 85 (96)
T ss_dssp SCSSGG
T ss_pred CCCCCC
Confidence 877543
No 102
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=122.90 Aligned_cols=76 Identities=33% Similarity=0.716 Sum_probs=70.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcc
Q 016188 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (394)
Q Consensus 232 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 305 (394)
+.++|||+|||..+++++|+++|++||.|.++.+..+ +|+|||+|.+.++|.+|+..|||..++|+.|+|++++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 4589999999999999999999999999999999875 5899999999999999999999999999999999998
Q ss_pred cC
Q 016188 306 KQ 307 (394)
Q Consensus 306 ~~ 307 (394)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 75
No 103
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2e-17 Score=126.10 Aligned_cols=90 Identities=29% Similarity=0.510 Sum_probs=83.2
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcce
Q 016188 110 RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189 (394)
Q Consensus 110 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l 189 (394)
.....+.++|||+|||+++++++|+++| +.||.|..|.++.++.+++++|||||+|.+.++|++|++.|++..+.|+.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (105)
T 1x5u_A 9 ISERNQDATVYVGGLDEKVSEPLLWELF-LQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPI 87 (105)
T ss_dssp CCCCCTTTEEEEECCCTTCCHHHHHHHH-HTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBC
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 3445668899999999999999999999 899999999999999899999999999999999999999999999999999
Q ss_pred EEeecCCCCCc
Q 016188 190 RISAATPKKTT 200 (394)
Q Consensus 190 ~v~~a~~~~~~ 200 (394)
.|.++.++...
T Consensus 88 ~v~~a~~~~~~ 98 (105)
T 1x5u_A 88 RVNKASAHNKN 98 (105)
T ss_dssp EEEETTTTSCC
T ss_pred EEEECCCCCcC
Confidence 99999876543
No 104
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=5.9e-18 Score=128.08 Aligned_cols=78 Identities=26% Similarity=0.515 Sum_probs=73.8
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccC
Q 016188 230 DITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307 (394)
Q Consensus 230 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 307 (394)
....++|||+|||..+++++|+++|++||.|.++.+.+++|||||+|.+.++|.+|+..|||..|+|+.|+|+|++++
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 345689999999999999999999999999999999999999999999999999999999999999999999998764
No 105
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2.8e-17 Score=126.68 Aligned_cols=87 Identities=21% Similarity=0.432 Sum_probs=77.6
Q ss_pred CCCCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcC------CCC
Q 016188 16 HPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYN------GTP 89 (394)
Q Consensus 16 ~~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~------~~~ 89 (394)
.+....+.++|||+|||+++++++|+++|.+||.|.+|+|++++.++++++||||+|.+.++|.+|++.|+ +..
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~ 87 (111)
T 1x4h_A 8 LPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLK 87 (111)
T ss_dssp CCCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEE
T ss_pred CCCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcE
Confidence 34566778999999999999999999999999999999999998889999999999999999999999999 999
Q ss_pred CCCccceeeeecccC
Q 016188 90 MPGTEQNFRLNWASF 104 (394)
Q Consensus 90 ~~~~~~~v~~~~~~~ 104 (394)
+.++ .+.+.++..
T Consensus 88 ~~g~--~l~v~~a~~ 100 (111)
T 1x4h_A 88 LDGR--QLKVDLAVT 100 (111)
T ss_dssp SSSC--EEEEECCCC
T ss_pred EcCE--EEEEEECCC
Confidence 9885 555555543
No 106
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=2.5e-17 Score=125.04 Aligned_cols=86 Identities=24% Similarity=0.405 Sum_probs=75.8
Q ss_pred CCCCCCCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCC
Q 016188 13 QHHHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPG 92 (394)
Q Consensus 13 ~~~~~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~ 92 (394)
.........+.++|||+|||+++++++|+++|++||.|.+|+++.+ ++.+++||||+|.+.++|.+|++.|++..+.+
T Consensus 5 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 82 (103)
T 2d9p_A 5 SSGDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 82 (103)
T ss_dssp CCCCCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 3344556678899999999999999999999999999999999998 78899999999999999999999999999998
Q ss_pred ccceeeee
Q 016188 93 TEQNFRLN 100 (394)
Q Consensus 93 ~~~~v~~~ 100 (394)
+.+.|...
T Consensus 83 ~~l~V~~a 90 (103)
T 2d9p_A 83 KPLYVALA 90 (103)
T ss_dssp SBCEEEEC
T ss_pred cEEEEEEe
Confidence 65555444
No 107
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.7e-17 Score=126.04 Aligned_cols=90 Identities=26% Similarity=0.410 Sum_probs=83.4
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcce
Q 016188 110 RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189 (394)
Q Consensus 110 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l 189 (394)
.....+.++|||+|||+++++++|+++| +.||.|..|.++.++.+++++|||||+|.+.++|++|++.|++..+.|+.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (103)
T 2cq0_A 9 NRRADDNATIRVTNLSEDTRETDLQELF-RPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLIL 87 (103)
T ss_dssp CCCCSSSEEEEEESCCTTCCHHHHHTTS-TTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHH-HhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 3445668999999999999999999999 899999999999999899999999999999999999999999999999999
Q ss_pred EEeecCCCCCc
Q 016188 190 RISAATPKKTT 200 (394)
Q Consensus 190 ~v~~a~~~~~~ 200 (394)
.|.++.++...
T Consensus 88 ~v~~a~~~~~~ 98 (103)
T 2cq0_A 88 NVEWAKPSTNS 98 (103)
T ss_dssp EEEESSCCCCS
T ss_pred EEEECCCCCCC
Confidence 99999876543
No 108
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.9e-17 Score=124.52 Aligned_cols=83 Identities=20% Similarity=0.442 Sum_probs=75.2
Q ss_pred CcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceee
Q 016188 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (394)
Q Consensus 19 ~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~ 98 (394)
..++.++|||+|||+++++++|+++|++||.|.+|++++++.++++++||||+|.+.++|.+|++.|++..|.++.+.|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44577999999999999999999999999999999999998889999999999999999999999999999999665554
Q ss_pred eec
Q 016188 99 LNW 101 (394)
Q Consensus 99 ~~~ 101 (394)
...
T Consensus 88 ~a~ 90 (102)
T 1x5s_A 88 QAG 90 (102)
T ss_dssp EEE
T ss_pred ECC
Confidence 443
No 109
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.5e-17 Score=124.31 Aligned_cols=84 Identities=19% Similarity=0.320 Sum_probs=75.9
Q ss_pred CCCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccce
Q 016188 17 PMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQN 96 (394)
Q Consensus 17 ~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~ 96 (394)
.....+.++|||+|||+++++++|+++|++||.|.+|++++++.++++++||||+|.+.++|.+|++.|++..+.++ .
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~--~ 86 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR--R 86 (95)
T ss_dssp CCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE--E
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCE--E
Confidence 34567789999999999999999999999999999999999988899999999999999999999999999999985 4
Q ss_pred eeeecc
Q 016188 97 FRLNWA 102 (394)
Q Consensus 97 v~~~~~ 102 (394)
+.+.++
T Consensus 87 l~v~~a 92 (95)
T 2cqc_A 87 IRVSGP 92 (95)
T ss_dssp EEEECC
T ss_pred EEEEec
Confidence 555554
No 110
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.74 E-value=1.9e-17 Score=126.21 Aligned_cols=81 Identities=26% Similarity=0.522 Sum_probs=75.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-----CcEEEEEeCchHHHHHHHHHhCCceeCc---EEEEEE
Q 016188 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG-----RGCGFVQFAARASAEEAILRMQGHMIGQ---QQVRIS 302 (394)
Q Consensus 231 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g---~~l~v~ 302 (394)
...++|||+|||..+++++|+++|++||.|.++.|..+ +|||||+|.+.++|.+|++.||+..+.| +.|+|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 45699999999999999999999999999999999876 7999999999999999999999999988 999999
Q ss_pred EcccCCCCC
Q 016188 303 WGRKQDVTG 311 (394)
Q Consensus 303 ~a~~~~~~~ 311 (394)
+++++..+.
T Consensus 93 ~a~~~~~~~ 101 (105)
T 2dnh_A 93 FADTDKESG 101 (105)
T ss_dssp ESCSSCCCS
T ss_pred ECccCcccC
Confidence 999876543
No 111
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.74 E-value=2e-17 Score=128.28 Aligned_cols=89 Identities=24% Similarity=0.374 Sum_probs=82.5
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceE
Q 016188 111 PDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190 (394)
Q Consensus 111 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~ 190 (394)
....+.++|||+|||+++++++|+++| +.||.|..|.++.++.+++++|||||+|.+.++|++|++.|++..+.|+.|.
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMF-MPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHH-GGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 344567899999999999999999999 8999999999999998999999999999999999999999999999999999
Q ss_pred EeecCCCCCc
Q 016188 191 ISAATPKKTT 200 (394)
Q Consensus 191 v~~a~~~~~~ 200 (394)
|.++.++...
T Consensus 99 V~~a~~~~~~ 108 (115)
T 2cpz_A 99 VQLKRSKNDS 108 (115)
T ss_dssp EECCCCSCCC
T ss_pred EEEcCCCCcC
Confidence 9999876543
No 112
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.8e-17 Score=125.72 Aligned_cols=88 Identities=25% Similarity=0.441 Sum_probs=82.3
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEE
Q 016188 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191 (394)
Q Consensus 112 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v 191 (394)
...+.++|||+|||+++++++|+++| +.||.|..+.++.++.+++++|||||+|.+.++|++|++.|++..+.|+.|.|
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAF-IPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 86 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHH-TTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHh-hccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34568899999999999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCc
Q 016188 192 SAATPKKTT 200 (394)
Q Consensus 192 ~~a~~~~~~ 200 (394)
.++.++...
T Consensus 87 ~~a~~~~~~ 95 (102)
T 2cqb_A 87 NLAKPMRIK 95 (102)
T ss_dssp EECCCCCCC
T ss_pred EeCCCCCCC
Confidence 999877654
No 113
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.5e-17 Score=124.54 Aligned_cols=86 Identities=35% Similarity=0.686 Sum_probs=81.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEE-EEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEe
Q 016188 114 GPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGA-KVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRIS 192 (394)
Q Consensus 114 ~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v-~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~ 192 (394)
.+.++|||+|||+++++++|+++| +.||.|..+ .++.++.+++++|||||+|.+.++|++|++.|++..+.|+.|.|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTF-SAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHH-HTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 457899999999999999999999 899999999 999998899999999999999999999999999999999999999
Q ss_pred ecCCCCCc
Q 016188 193 AATPKKTT 200 (394)
Q Consensus 193 ~a~~~~~~ 200 (394)
++.++...
T Consensus 82 ~a~~~~~~ 89 (96)
T 1x5t_A 82 YAFKKDSK 89 (96)
T ss_dssp ESCCCCCC
T ss_pred EecccCCC
Confidence 99877654
No 114
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.5e-17 Score=126.39 Aligned_cols=89 Identities=24% Similarity=0.414 Sum_probs=82.7
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceE
Q 016188 111 PDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190 (394)
Q Consensus 111 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~ 190 (394)
....+.++|||+|||+++++++|+++| +.||.|..+.++.++.+++++|||||+|.+.++|++|++.|++..+.|+.|.
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVF-EKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHH-TTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 445568999999999999999999999 8999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCc
Q 016188 191 ISAATPKKTT 200 (394)
Q Consensus 191 v~~a~~~~~~ 200 (394)
|.++......
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2dnm_A 87 VQVARYGRRD 96 (103)
T ss_dssp EEECSSCCSC
T ss_pred EEECCcCCCC
Confidence 9999876543
No 115
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3.5e-17 Score=125.19 Aligned_cols=87 Identities=18% Similarity=0.455 Sum_probs=76.9
Q ss_pred CCCCCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeec-CCCCCCcceEEEEEcCHHHHHHHHHHc-CCCCCCC
Q 016188 15 HHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRN-KITGQPEGYGFVEFVSHAAAERVLQTY-NGTPMPG 92 (394)
Q Consensus 15 ~~~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~-~~~g~~~g~afV~f~~~e~A~~a~~~l-~~~~~~~ 92 (394)
..+....+.++|||+|||+++++++|+++|++||.|.+|+++++ ..++++++||||+|.+.++|.+|++.| ++..|.+
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g 86 (107)
T 2cph_A 7 GQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYG 86 (107)
T ss_dssp CSSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSS
T ss_pred cccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECC
Confidence 34456677899999999999999999999999999999999998 778999999999999999999999999 9999998
Q ss_pred ccceeeeeccc
Q 016188 93 TEQNFRLNWAS 103 (394)
Q Consensus 93 ~~~~v~~~~~~ 103 (394)
+.+ .+.++.
T Consensus 87 ~~l--~v~~a~ 95 (107)
T 2cph_A 87 RRL--VLEWAD 95 (107)
T ss_dssp CBC--EEEECC
T ss_pred CEE--EEEeCC
Confidence 654 455544
No 116
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=125.41 Aligned_cols=87 Identities=48% Similarity=0.913 Sum_probs=78.4
Q ss_pred CCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCce-EEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccce
Q 016188 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVV-SIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQN 96 (394)
Q Consensus 18 ~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~-~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~ 96 (394)
....+.++|||+|||+++++++|+++|++||.|. +|++++++.++++++||||+|.+.++|++|++.|++..+.++...
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 83 (99)
T 2div_A 4 GSSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPA 83 (99)
T ss_dssp CCCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcc
Confidence 4456789999999999999999999999999999 999999988999999999999999999999999999999997632
Q ss_pred --eeeecccC
Q 016188 97 --FRLNWASF 104 (394)
Q Consensus 97 --v~~~~~~~ 104 (394)
+++.++..
T Consensus 84 ~~l~v~~a~~ 93 (99)
T 2div_A 84 KRFKLNYATY 93 (99)
T ss_dssp EECCEEETTC
T ss_pred eeEEEeecCC
Confidence 66777654
No 117
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=7.9e-18 Score=127.40 Aligned_cols=77 Identities=27% Similarity=0.476 Sum_probs=73.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccCCCC
Q 016188 234 TTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG-RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVT 310 (394)
Q Consensus 234 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~-~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~ 310 (394)
++|||+|||..+|+++|+++|++||.|.++.+..+ +|+|||+|.+.++|.+|++.||+..++|+.|+|++++++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 47999999999999999999999999999999987 999999999999999999999999999999999999987643
No 118
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3.4e-17 Score=126.14 Aligned_cols=89 Identities=21% Similarity=0.455 Sum_probs=82.8
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhC------Ceee
Q 016188 111 PDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMN------GVFC 184 (394)
Q Consensus 111 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~------~~~~ 184 (394)
....+.++|||+|||+++++++|+++| +.||.|..|.++.++.+++++|||||+|.+.++|.+|++.++ +..+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~ 88 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVL-QQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL 88 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHH-HTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHH-HhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE
Confidence 345568899999999999999999999 899999999999999999999999999999999999999999 9999
Q ss_pred cCcceEEeecCCCCCc
Q 016188 185 STRPMRISAATPKKTT 200 (394)
Q Consensus 185 ~g~~l~v~~a~~~~~~ 200 (394)
.|+.|.|.++.++...
T Consensus 89 ~g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 89 DGRQLKVDLAVTRDEA 104 (111)
T ss_dssp SSCEEEEECCCCCCCC
T ss_pred cCEEEEEEECCCCccC
Confidence 9999999999877554
No 119
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.73 E-value=4.3e-18 Score=125.88 Aligned_cols=82 Identities=17% Similarity=0.210 Sum_probs=72.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhhCC--CeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeec
Q 016188 117 HSIFVGDLAPDVTDYLLQETFRSQYP--SVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (394)
Q Consensus 117 ~~l~v~nlp~~~t~~~l~~~f~~~~G--~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a 194 (394)
.+|||+|||+++++++|+++| +.|| .|.++.++.++.+|+++|||||+|.+.++|++|++.|++..+.|+.|.|.++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F-~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAV-HSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHH-HTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHH-HHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 479999999999999999999 8999 9999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 016188 195 TPKKT 199 (394)
Q Consensus 195 ~~~~~ 199 (394)
.+...
T Consensus 81 ~~~~~ 85 (90)
T 3p5t_L 81 NKLEH 85 (90)
T ss_dssp -----
T ss_pred CCCcc
Confidence 77644
No 120
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.7e-17 Score=124.77 Aligned_cols=79 Identities=27% Similarity=0.497 Sum_probs=72.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeC---------CCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEE
Q 016188 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM---------GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRIS 302 (394)
Q Consensus 232 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~---------~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 302 (394)
+.++|||+|||..+++++|+++|++||.|.++.|.. .+|||||+|.+.++|.+|+..||+..|+|+.|+|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 458999999999999999999999999999999974 25799999999999999999999999999999999
Q ss_pred EcccCCCC
Q 016188 303 WGRKQDVT 310 (394)
Q Consensus 303 ~a~~~~~~ 310 (394)
+++++...
T Consensus 84 ~a~~~~~~ 91 (98)
T 2cpf_A 84 ISERATKP 91 (98)
T ss_dssp CSSCSSCC
T ss_pred EccCCCCC
Confidence 99876543
No 121
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.73 E-value=3.1e-17 Score=131.77 Aligned_cols=82 Identities=28% Similarity=0.454 Sum_probs=75.2
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEE
Q 016188 229 NDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRIS 302 (394)
Q Consensus 229 ~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 302 (394)
.....++|||+|||..+++++|+++|+.||.|.+|.|+.+ +|||||+|.+.++|.+|++.||+..|+|+.|+|+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4456789999999999999999999999999999999764 6899999999999999999999999999999999
Q ss_pred EcccCCCC
Q 016188 303 WGRKQDVT 310 (394)
Q Consensus 303 ~a~~~~~~ 310 (394)
++++...+
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99987543
No 122
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=4.2e-17 Score=122.88 Aligned_cols=82 Identities=16% Similarity=0.349 Sum_probs=73.9
Q ss_pred CCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCcccee
Q 016188 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNF 97 (394)
Q Consensus 18 ~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v 97 (394)
....+.++|||+|||.++++++|+++|++||.|.+|+++.++.++++++||||+|.+.++|.+|++ |++..+.++.+.|
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEE
Confidence 345677999999999999999999999999999999999998889999999999999999999998 8999999865555
Q ss_pred eee
Q 016188 98 RLN 100 (394)
Q Consensus 98 ~~~ 100 (394)
...
T Consensus 84 ~~a 86 (99)
T 2dgs_A 84 KRA 86 (99)
T ss_dssp EEC
T ss_pred EEC
Confidence 443
No 123
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=4.1e-17 Score=121.98 Aligned_cols=80 Identities=26% Similarity=0.532 Sum_probs=73.6
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeeee
Q 016188 21 EEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLN 100 (394)
Q Consensus 21 ~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~~ 100 (394)
.+.++|||+|||+++++++|+++|++||.|.+|++++++.++++++||||+|.+.++|.+|++.|++..+.++.+.|...
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 56789999999999999999999999999999999999888999999999999999999999999999999966555444
No 124
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.8e-17 Score=127.70 Aligned_cols=89 Identities=27% Similarity=0.443 Sum_probs=77.8
Q ss_pred CCCCCCCCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCC
Q 016188 12 HQHHHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMP 91 (394)
Q Consensus 12 ~~~~~~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~ 91 (394)
.....+....+.++|||+|||+++++++|+++|++||.|.+|+|++++.++++++||||+|.+.++|++|++.+++ .|.
T Consensus 6 ~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~ 84 (116)
T 2cqd_A 6 SGMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IID 84 (116)
T ss_dssp CCCCCCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EET
T ss_pred CCCCCCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCC
Confidence 3345566777889999999999999999999999999999999999988899999999999999999999999998 788
Q ss_pred Cccceeeeeccc
Q 016188 92 GTEQNFRLNWAS 103 (394)
Q Consensus 92 ~~~~~v~~~~~~ 103 (394)
++. +.+.++.
T Consensus 85 g~~--l~V~~a~ 94 (116)
T 2cqd_A 85 GRK--ANVNLAY 94 (116)
T ss_dssp TEE--CEEEEST
T ss_pred CEE--EEEEEcc
Confidence 855 4555543
No 125
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.8e-17 Score=121.46 Aligned_cols=78 Identities=23% Similarity=0.434 Sum_probs=72.6
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccCCC
Q 016188 230 DITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDV 309 (394)
Q Consensus 230 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 309 (394)
....++|||+|||..+++++|+++|++||.|.++.+. +++|||+|.+.++|.+|+..|||..|+|+.|+|++++++..
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 83 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQK 83 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCC
Confidence 3456899999999999999999999999999999998 55999999999999999999999999999999999987654
No 126
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=4.1e-18 Score=129.65 Aligned_cols=79 Identities=14% Similarity=0.176 Sum_probs=72.5
Q ss_pred CCCccEEEEcCCCCC-CCHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCC--ceeCcEEEEEEEccc
Q 016188 230 DITNTTIFVGNLDPN-VTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQG--HMIGQQQVRISWGRK 306 (394)
Q Consensus 230 ~~~~~~l~v~nl~~~-~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g--~~~~g~~l~v~~a~~ 306 (394)
..+.++|||+|||++ +++++|+++|++||.|.++.|.++||||||+|.+.++|.+|++.|++ ..|.|++|+|.+++.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 345789999999998 99999999999999999999999999999999999999999998864 569999999999986
Q ss_pred CC
Q 016188 307 QD 308 (394)
Q Consensus 307 ~~ 308 (394)
+.
T Consensus 102 ~~ 103 (112)
T 1x4f_A 102 YK 103 (112)
T ss_dssp CS
T ss_pred cc
Confidence 54
No 127
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.73 E-value=1.7e-17 Score=121.27 Aligned_cols=75 Identities=29% Similarity=0.596 Sum_probs=70.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEc
Q 016188 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWG 304 (394)
Q Consensus 231 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 304 (394)
.+.++|||+|||..+++++|+++|++||.|.++.++.+ +|+|||+|.+.++|.+|++.|||..++|+.|+|++|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35689999999999999999999999999999999654 789999999999999999999999999999999998
Q ss_pred c
Q 016188 305 R 305 (394)
Q Consensus 305 ~ 305 (394)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 128
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.73 E-value=1.6e-17 Score=127.04 Aligned_cols=80 Identities=30% Similarity=0.523 Sum_probs=73.5
Q ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccC
Q 016188 228 DNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307 (394)
Q Consensus 228 ~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 307 (394)
......++|||+|||..+++++|+++|++||.|.++.+. +|||||+|.+.++|.+|+..|||..|+|+.|+|++++++
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 345567999999999999999999999999999999999 899999999999999999999999999999999999876
Q ss_pred CC
Q 016188 308 DV 309 (394)
Q Consensus 308 ~~ 309 (394)
..
T Consensus 104 ~~ 105 (108)
T 2jvo_A 104 AK 105 (108)
T ss_dssp C-
T ss_pred CC
Confidence 54
No 129
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.5e-17 Score=127.51 Aligned_cols=82 Identities=24% Similarity=0.492 Sum_probs=75.6
Q ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC----CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEE
Q 016188 227 ADNDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG----RGCGFVQFAARASAEEAILRMQGHMIGQQQVRIS 302 (394)
Q Consensus 227 ~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 302 (394)
.......++|||+|||..+++++|+++|++||.|.++.+..+ +|||||+|.+.++|.+|++.|||..|+|+.|+|+
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 344556799999999999999999999999999999999876 7999999999999999999999999999999999
Q ss_pred EcccCC
Q 016188 303 WGRKQD 308 (394)
Q Consensus 303 ~a~~~~ 308 (394)
+++++.
T Consensus 103 ~a~~~~ 108 (109)
T 2err_A 103 NATARV 108 (109)
T ss_dssp ECCCSC
T ss_pred ECCCCc
Confidence 998763
No 130
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.9e-17 Score=126.43 Aligned_cols=86 Identities=21% Similarity=0.348 Sum_probs=80.7
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEE
Q 016188 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191 (394)
Q Consensus 112 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v 191 (394)
...+.++|||+|||+++++++|+++| +.||.|..+.++.++.+|+++|||||+|.+.++|++|++.|++..+.|+.|.|
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 97 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKF-AEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 97 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHH-GGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHH-hccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 34567899999999999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCC
Q 016188 192 SAATPKK 198 (394)
Q Consensus 192 ~~a~~~~ 198 (394)
.++.++.
T Consensus 98 ~~a~~~~ 104 (106)
T 1p27_B 98 DWCFVRG 104 (106)
T ss_dssp EESEESS
T ss_pred EeecCCC
Confidence 9987653
No 131
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.73 E-value=6.9e-18 Score=130.95 Aligned_cols=105 Identities=18% Similarity=0.312 Sum_probs=92.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEe
Q 016188 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRIS 192 (394)
Q Consensus 113 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~ 192 (394)
..+.++|||+|||+++++++|+++| +.||.|..+.++.+ +.++|||||+|.+.++|..|++.||+..+.|+.|.|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIF-GKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHH-HTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3457899999999999999999999 89999999999876 5679999999999999999999999999999999999
Q ss_pred ecCCCCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCCCHHHHHHHhcccCC
Q 016188 193 AATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNVTEEELKQTFLHFGE 259 (394)
Q Consensus 193 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~ 259 (394)
++.+.... .+++...++++|+++|++||.
T Consensus 81 ~a~~~~~~--------------------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 81 YYNANRAF--------------------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp ECCHHHHT--------------------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred EecCChhh--------------------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 98654321 356677789999999999984
No 132
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-17 Score=126.65 Aligned_cols=78 Identities=14% Similarity=0.322 Sum_probs=72.8
Q ss_pred CccEEEE--cCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCcee-----CcEEEEEEEc
Q 016188 232 TNTTIFV--GNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMI-----GQQQVRISWG 304 (394)
Q Consensus 232 ~~~~l~v--~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~~-----~g~~l~v~~a 304 (394)
+.++||| +||+..+++++|+++|++||.|.+|.|+.+||||||+|.+.++|++|++.|||+.+ .|+.|.|.++
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a 103 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFV 103 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEec
Confidence 4688999 77999999999999999999999999999999999999999999999999999998 7999999999
Q ss_pred ccCCC
Q 016188 305 RKQDV 309 (394)
Q Consensus 305 ~~~~~ 309 (394)
+..+.
T Consensus 104 ~~~p~ 108 (114)
T 2cq2_A 104 EKVQW 108 (114)
T ss_dssp SCCCC
T ss_pred ccCcc
Confidence 86553
No 133
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=3.5e-17 Score=122.09 Aligned_cols=83 Identities=27% Similarity=0.392 Sum_probs=78.4
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEE
Q 016188 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191 (394)
Q Consensus 112 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v 191 (394)
...+.++|||+|||+++++++|+++| +.||.|..+.++.++.+++++|||||+|.+.++|++|++.|++..+.|+.|.|
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f-~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIF-SKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHT-TTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHH-HhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34567899999999999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred eecC
Q 016188 192 SAAT 195 (394)
Q Consensus 192 ~~a~ 195 (394)
.++.
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9873
No 134
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.73 E-value=5.3e-17 Score=123.75 Aligned_cols=88 Identities=24% Similarity=0.423 Sum_probs=81.0
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecC---c
Q 016188 111 PDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCST---R 187 (394)
Q Consensus 111 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g---~ 187 (394)
....+.++|||+|||+++++++|+++| +.||.|..+.++.++ +++++|||||+|.+.++|++|++.|++..+.+ +
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F-~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~ 87 (105)
T 2dnh_A 10 SRGGRDRKLFVGMLNKQQSEEDVLRLF-QPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASS 87 (105)
T ss_dssp CSCCCCCEEEEESCCTTCCHHHHHHHH-TTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSS
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCc
Confidence 344568999999999999999999999 899999999999997 69999999999999999999999999999988 9
Q ss_pred ceEEeecCCCCCc
Q 016188 188 PMRISAATPKKTT 200 (394)
Q Consensus 188 ~l~v~~a~~~~~~ 200 (394)
.|.|.++.++...
T Consensus 88 ~l~V~~a~~~~~~ 100 (105)
T 2dnh_A 88 SLVVKFADTDKES 100 (105)
T ss_dssp CCEEEESCSSCCC
T ss_pred cEEEEECccCccc
Confidence 9999999877654
No 135
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.4e-17 Score=125.15 Aligned_cols=84 Identities=24% Similarity=0.395 Sum_probs=75.8
Q ss_pred CCCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccce
Q 016188 17 PMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQN 96 (394)
Q Consensus 17 ~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~ 96 (394)
+...++.++|||+|||+++++++|+++|++||.|.+|.++.++.++++++||||+|.+.++|.+|++.|++..+.++.+.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 34556789999999999999999999999999999999999988899999999999999999999999999999996555
Q ss_pred eeee
Q 016188 97 FRLN 100 (394)
Q Consensus 97 v~~~ 100 (394)
|...
T Consensus 87 V~~a 90 (103)
T 2dnm_A 87 VQVA 90 (103)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 5443
No 136
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.73 E-value=2.3e-17 Score=123.50 Aligned_cols=77 Identities=19% Similarity=0.500 Sum_probs=72.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEccc
Q 016188 233 NTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRK 306 (394)
Q Consensus 233 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 306 (394)
.++|||+|||..+++++|+++|++||.|.++.+..+ +|+|||+|.+.++|.+|++.|||..|+|+.|+|+++++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 478999999999999999999999999999999865 68999999999999999999999999999999999987
Q ss_pred CCC
Q 016188 307 QDV 309 (394)
Q Consensus 307 ~~~ 309 (394)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 653
No 137
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.73 E-value=1.3e-17 Score=127.34 Aligned_cols=77 Identities=16% Similarity=0.152 Sum_probs=70.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhcccC-CeEEEEEeC--CCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccCC
Q 016188 232 TNTTIFVGNLDPNVTEEELKQTFLHFG-EIVNVKIPM--GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308 (394)
Q Consensus 232 ~~~~l~v~nl~~~~t~~~l~~~F~~~G-~i~~~~i~~--~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 308 (394)
..++|||+|||+++++++|+++|++|| .|..+.|.. .+|||||+|.+.++|++|++.|||..|+|+.|+|++++..+
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~p 106 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNPP 106 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC--
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 458999999999999999999999999 899999963 58999999999999999999999999999999999997543
No 138
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.73 E-value=1.4e-17 Score=131.52 Aligned_cols=82 Identities=21% Similarity=0.467 Sum_probs=75.4
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEE
Q 016188 229 NDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRIS 302 (394)
Q Consensus 229 ~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 302 (394)
.....++|||+|||..+|+++|+++|++||.|.+|.|+.+ +|+|||+|.+.++|.+|++.|||..|+|+.|+|+
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 3445689999999999999999999999999999999866 7899999999999999999999999999999999
Q ss_pred EcccCCCC
Q 016188 303 WGRKQDVT 310 (394)
Q Consensus 303 ~a~~~~~~ 310 (394)
++.++...
T Consensus 98 ~a~~~~~~ 105 (126)
T 3ex7_B 98 WCFVRGPP 105 (126)
T ss_dssp ESEESSSC
T ss_pred EecCCCCC
Confidence 99877544
No 139
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.73 E-value=2e-17 Score=120.95 Aligned_cols=82 Identities=26% Similarity=0.451 Sum_probs=77.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEe
Q 016188 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRIS 192 (394)
Q Consensus 113 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~ 192 (394)
..+.++|||+|||+++++++|+++| +.||.|..+.++.++.+++++|+|||+|.+.++|.+|++.|++..+.|+.|.|.
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAF-IPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHH-GGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHH-hccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3457899999999999999999999 899999999999998899999999999999999999999999999999999999
Q ss_pred ecC
Q 016188 193 AAT 195 (394)
Q Consensus 193 ~a~ 195 (394)
++.
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 873
No 140
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=4.8e-17 Score=124.44 Aligned_cols=90 Identities=19% Similarity=0.407 Sum_probs=82.8
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeC-CCCCCCccEEEEEeCCHHHHHHHHHhh-CCeeecCc
Q 016188 110 RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTD-PNTGRSKGYGFVKFLDENERNRAMTEM-NGVFCSTR 187 (394)
Q Consensus 110 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~-~~tg~~~g~afV~f~~~e~a~~ai~~l-~~~~~~g~ 187 (394)
.....+.++|||+|||+++++++|+++| +.||.|..|.++.+ +.+++++|||||+|.+.++|++|++.| ++..+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~ 87 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELF-STFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR 87 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHH-HTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHH-HccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCC
Confidence 3445668999999999999999999999 89999999999999 788999999999999999999999999 99999999
Q ss_pred ceEEeecCCCCCc
Q 016188 188 PMRISAATPKKTT 200 (394)
Q Consensus 188 ~l~v~~a~~~~~~ 200 (394)
.|.|.++.++...
T Consensus 88 ~l~v~~a~~~~~~ 100 (107)
T 2cph_A 88 RLVLEWADSEVTV 100 (107)
T ss_dssp BCEEEECCCCCCC
T ss_pred EEEEEeCCCCCCC
Confidence 9999999876553
No 141
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.5e-17 Score=125.60 Aligned_cols=89 Identities=27% Similarity=0.443 Sum_probs=78.2
Q ss_pred CCCCCCCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCC
Q 016188 13 QHHHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPG 92 (394)
Q Consensus 13 ~~~~~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~ 92 (394)
........++.++|||+|||+++++++|+++|++||.|.+|++++++.++++++||||+|.+.++|.+|++. ++..|.+
T Consensus 6 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g 84 (105)
T 2dh8_A 6 SGMNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDG 84 (105)
T ss_dssp CCCCCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETT
T ss_pred CCCCcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECC
Confidence 334455677889999999999999999999999999999999999988899999999999999999999998 9999998
Q ss_pred ccceeeeecccC
Q 016188 93 TEQNFRLNWASF 104 (394)
Q Consensus 93 ~~~~v~~~~~~~ 104 (394)
+ .+.+.++..
T Consensus 85 ~--~l~V~~a~~ 94 (105)
T 2dh8_A 85 R--NIDPKPCTP 94 (105)
T ss_dssp E--EEBCCCSCC
T ss_pred E--EEEEEEccC
Confidence 5 555555543
No 142
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.7e-17 Score=123.21 Aligned_cols=85 Identities=24% Similarity=0.443 Sum_probs=80.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhhCCCee-EEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcc---
Q 016188 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVR-GAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRP--- 188 (394)
Q Consensus 113 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~-~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~--- 188 (394)
..+.++|||+|||+++++++|+++| +.||.|. .+.++.++.+++++|||||+|.+.++|++|++.|++..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAF-ATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHH-HHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHH-HHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 4468899999999999999999999 8999999 9999999999999999999999999999999999999999999
Q ss_pred -eEEeecCCCC
Q 016188 189 -MRISAATPKK 198 (394)
Q Consensus 189 -l~v~~a~~~~ 198 (394)
|.|.++.+..
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 9999987654
No 143
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3e-17 Score=124.39 Aligned_cols=88 Identities=34% Similarity=0.546 Sum_probs=82.0
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEE
Q 016188 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191 (394)
Q Consensus 112 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v 191 (394)
...+.++|||+|||+++++++|+++| +.||.|..+.++.++.+++++|||||+|.+.++|.+|++.|++..+.|+.|.|
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVF-SKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHH-HHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHH-HhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34567899999999999999999999 89999999999999989999999999999999999999999999999999999
Q ss_pred eecCCCCCc
Q 016188 192 SAATPKKTT 200 (394)
Q Consensus 192 ~~a~~~~~~ 200 (394)
.++.++...
T Consensus 87 ~~a~~~~~~ 95 (102)
T 1x5s_A 87 DQAGKSSDN 95 (102)
T ss_dssp EEEECCCCC
T ss_pred EECCCCCCC
Confidence 999876543
No 144
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.72 E-value=2.8e-17 Score=126.33 Aligned_cols=76 Identities=24% Similarity=0.542 Sum_probs=71.3
Q ss_pred CccEEEEcCCCCC-CCHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccCCC
Q 016188 232 TNTTIFVGNLDPN-VTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDV 309 (394)
Q Consensus 232 ~~~~l~v~nl~~~-~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 309 (394)
..++|||+|||.. +++++|+++|++||.|.+|.+ .++||||+|.+.++|.+|+..||+..|+|+.|+|++++++..
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPKP 102 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCCS
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCCC
Confidence 4589999999999 999999999999999999999 589999999999999999999999999999999999986543
No 145
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=9.9e-17 Score=120.29 Aligned_cols=78 Identities=26% Similarity=0.499 Sum_probs=72.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccCCCC
Q 016188 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVT 310 (394)
Q Consensus 231 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~ 310 (394)
...++|||+|| .+++++|+++|++||.|.+|.|...+|||||+|.+.++|.+|+..||+..|+|+.|+|.+++++...
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~~ 90 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPML 90 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCCC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCCC
Confidence 45689999996 8999999999999999999999999999999999999999999999999999999999999877544
No 146
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=5.9e-17 Score=125.48 Aligned_cols=82 Identities=22% Similarity=0.379 Sum_probs=74.0
Q ss_pred CCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCcccee
Q 016188 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNF 97 (394)
Q Consensus 18 ~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v 97 (394)
...++.++|||+|||+++++++|+++|.+||.|.+|+|+.++ ++++++||||+|.+.++|.+|++.|++..|.++.+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 88 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 88 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEE
Confidence 345667899999999999999999999999999999999998 6999999999999999999999999999999866555
Q ss_pred eee
Q 016188 98 RLN 100 (394)
Q Consensus 98 ~~~ 100 (394)
...
T Consensus 89 ~~a 91 (114)
T 2do0_A 89 KMD 91 (114)
T ss_dssp EEC
T ss_pred EEc
Confidence 543
No 147
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.72 E-value=3.1e-17 Score=129.53 Aligned_cols=87 Identities=26% Similarity=0.424 Sum_probs=81.6
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceE
Q 016188 111 PDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190 (394)
Q Consensus 111 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~ 190 (394)
....+.++|||+|||+++++++|+++| +.||.|..|.++.++.+++++|||||+|.+.++|++|++.|++..+.|+.|.
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F-~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVF-SKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHH-TTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 345668899999999999999999999 8999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCC
Q 016188 191 ISAATPKK 198 (394)
Q Consensus 191 v~~a~~~~ 198 (394)
|.++.++.
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99997764
No 148
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.72 E-value=3e-17 Score=120.82 Aligned_cols=77 Identities=26% Similarity=0.475 Sum_probs=71.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeC-------CCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEc
Q 016188 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM-------GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWG 304 (394)
Q Consensus 232 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~-------~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 304 (394)
..++|||+|||.++++++|+++|++||.|.++.+.. .+|+|||+|.+.++|.+|+..|||..|+|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 358999999999999999999999999999999865 4689999999999999999999999999999999999
Q ss_pred ccCC
Q 016188 305 RKQD 308 (394)
Q Consensus 305 ~~~~ 308 (394)
.++.
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 149
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.72 E-value=5e-17 Score=122.44 Aligned_cols=83 Identities=29% Similarity=0.371 Sum_probs=78.3
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeE--------EEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCee
Q 016188 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRG--------AKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVF 183 (394)
Q Consensus 112 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~--------v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~ 183 (394)
...+.++|||+|||+++++++|+++| +.||.|.. +.++.++.+|+++|||||+|.+.++|++|++.|++..
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYF-KQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHH-TTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHH-HHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 44567899999999999999999999 89999999 9999999999999999999999999999999999999
Q ss_pred ecCcceEEeecC
Q 016188 184 CSTRPMRISAAT 195 (394)
Q Consensus 184 ~~g~~l~v~~a~ 195 (394)
+.|+.|.|.++.
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999873
No 150
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.72 E-value=5.9e-17 Score=123.70 Aligned_cols=90 Identities=19% Similarity=0.392 Sum_probs=77.5
Q ss_pred CCCCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCC-CCcc
Q 016188 16 HPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPM-PGTE 94 (394)
Q Consensus 16 ~~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~-~~~~ 94 (394)
.+....+.++|||+|||.++++++|+++|++||.|.+|+++.++.++++++||||+|.+.++|.+|++.|++..+ .+..
T Consensus 6 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g 85 (106)
T 2dgp_A 6 SGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN 85 (106)
T ss_dssp CSCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC
Confidence 344566789999999999999999999999999999999999988899999999999999999999999999886 3333
Q ss_pred ceeeeecccCC
Q 016188 95 QNFRLNWASFG 105 (394)
Q Consensus 95 ~~v~~~~~~~~ 105 (394)
..+.+.++...
T Consensus 86 ~~l~v~~a~~~ 96 (106)
T 2dgp_A 86 RPIQVKPADSE 96 (106)
T ss_dssp SCCEEEECCCC
T ss_pred ceEEEEECCcc
Confidence 55666666543
No 151
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.72 E-value=3.8e-17 Score=124.81 Aligned_cols=89 Identities=17% Similarity=0.352 Sum_probs=82.1
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeee---cCc
Q 016188 111 PDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFC---STR 187 (394)
Q Consensus 111 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~---~g~ 187 (394)
....+.++|||+|||+++++++|+++| +.||.|..|.++.++.+++++|||||+|.+.++|.+|++.|++..+ .++
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 86 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLF-EEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 86 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHH-HHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc
Confidence 345568899999999999999999999 8999999999999999999999999999999999999999999887 899
Q ss_pred ceEEeecCCCCCc
Q 016188 188 PMRISAATPKKTT 200 (394)
Q Consensus 188 ~l~v~~a~~~~~~ 200 (394)
.|.|.++.++...
T Consensus 87 ~l~v~~a~~~~~~ 99 (106)
T 2dgp_A 87 PIQVKPADSESRG 99 (106)
T ss_dssp CCEEEECCCCSCC
T ss_pred eEEEEECCccccc
Confidence 9999999876543
No 152
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.72 E-value=2.7e-17 Score=128.22 Aligned_cols=81 Identities=26% Similarity=0.353 Sum_probs=74.0
Q ss_pred CCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCcccee
Q 016188 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNF 97 (394)
Q Consensus 18 ~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v 97 (394)
....+.++|||+|||+++++++|+++|++||.|.+|++++++.+++++|||||+|.+.++|.+|++.|++..+.++.+.|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34566789999999999999999999999999999999999888999999999999999999999999999999865554
Q ss_pred e
Q 016188 98 R 98 (394)
Q Consensus 98 ~ 98 (394)
.
T Consensus 115 ~ 115 (118)
T 2khc_A 115 Q 115 (118)
T ss_dssp E
T ss_pred E
Confidence 4
No 153
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.8e-17 Score=127.46 Aligned_cols=77 Identities=22% Similarity=0.352 Sum_probs=73.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccCC
Q 016188 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308 (394)
Q Consensus 232 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 308 (394)
..++|||+|||..+++++|+++|++||.|.+|.|++++++|||+|.+.++|.+|+..|||..|+|+.|.|+|++...
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999998644
No 154
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.6e-17 Score=123.76 Aligned_cols=86 Identities=16% Similarity=0.356 Sum_probs=79.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCC---CCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceE
Q 016188 114 GPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPN---TGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190 (394)
Q Consensus 114 ~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~---tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~ 190 (394)
.+.++|||+|||+++++++|+++| +.||.|..+.++.++. |++++|||||+|.+.++|++|++.|++..+.|+.|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVF-SKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHH-HTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 457899999999999999999999 8999999999999876 668999999999999999999999999999999999
Q ss_pred EeecCCCCCc
Q 016188 191 ISAATPKKTT 200 (394)
Q Consensus 191 v~~a~~~~~~ 200 (394)
|.++.++...
T Consensus 82 V~~a~~~~~~ 91 (98)
T 2cpf_A 82 VRISERATKP 91 (98)
T ss_dssp EECSSCSSCC
T ss_pred EEEccCCCCC
Confidence 9999876543
No 155
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.72 E-value=6.7e-17 Score=125.26 Aligned_cols=82 Identities=22% Similarity=0.443 Sum_probs=74.7
Q ss_pred CcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceee
Q 016188 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (394)
Q Consensus 19 ~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~ 98 (394)
+.++.++|||+|||+++++++|+++|++||.|.+|.++.+. +++++|||||+|.+.++|++|++.|++..+.++.+.|.
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45677999999999999999999999999999999999998 99999999999999999999999999999999665555
Q ss_pred eec
Q 016188 99 LNW 101 (394)
Q Consensus 99 ~~~ 101 (394)
...
T Consensus 82 ~a~ 84 (116)
T 2fy1_A 82 QAK 84 (116)
T ss_dssp ECC
T ss_pred ECC
Confidence 443
No 156
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.72 E-value=8.9e-18 Score=126.66 Aligned_cols=83 Identities=20% Similarity=0.270 Sum_probs=78.5
Q ss_pred CCcceEEEcCCCC------CCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecC-
Q 016188 114 GPEHSIFVGDLAP------DVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCST- 186 (394)
Q Consensus 114 ~~~~~l~v~nlp~------~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g- 186 (394)
..+++|||+|||. ++++++|+++| +.||.|.++.|+.++.||+++|||||+|.+.++|++|++.||+..+.|
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F-~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLF-SKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHH-HTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHH-HhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3478999999999 99999999999 899999999999999999999999999999999999999999999999
Q ss_pred cceEEeecCCC
Q 016188 187 RPMRISAATPK 197 (394)
Q Consensus 187 ~~l~v~~a~~~ 197 (394)
+.|.|.++.++
T Consensus 83 r~l~V~~a~~~ 93 (100)
T 3ns6_A 83 HRLFLYTMKDV 93 (100)
T ss_dssp CBCEEEESHHH
T ss_pred eEEEEEECchh
Confidence 99999998653
No 157
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.3e-17 Score=124.09 Aligned_cols=79 Identities=20% Similarity=0.382 Sum_probs=70.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhcccCC-eEEEEEeCCCcEEEEEeCchHHHHHHHHHhCC-ceeCcEEEEEEEcccCC
Q 016188 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGE-IVNVKIPMGRGCGFVQFAARASAEEAILRMQG-HMIGQQQVRISWGRKQD 308 (394)
Q Consensus 231 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~-i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g-~~~~g~~l~v~~a~~~~ 308 (394)
...++|||+|||..+|+++|+++|++||. |..+.+ ..++||||+|.+.++|.+|++.||| ..|+|+.|+|++++++.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~ 84 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKK 84 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCcc
Confidence 35589999999999999999999999999 555554 5689999999999999999999999 99999999999998765
Q ss_pred CC
Q 016188 309 VT 310 (394)
Q Consensus 309 ~~ 310 (394)
.+
T Consensus 85 ~~ 86 (93)
T 2cqh_A 85 LR 86 (93)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 158
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.72 E-value=5.2e-17 Score=121.63 Aligned_cols=78 Identities=26% Similarity=0.435 Sum_probs=72.1
Q ss_pred CCCCccEEEEcCCCC-CCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccC
Q 016188 229 NDITNTTIFVGNLDP-NVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307 (394)
Q Consensus 229 ~~~~~~~l~v~nl~~-~~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 307 (394)
.....++|||+|||. .+++++|+++|++||.|.++.+. +|||||+|.+.++|.+|+..|||..++|+.|+|++++++
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 344679999999998 99999999999999999999995 899999999999999999999999999999999999865
Q ss_pred C
Q 016188 308 D 308 (394)
Q Consensus 308 ~ 308 (394)
.
T Consensus 96 ~ 96 (97)
T 2xnq_A 96 A 96 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 159
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.72 E-value=3.4e-17 Score=125.91 Aligned_cols=87 Identities=21% Similarity=0.324 Sum_probs=81.3
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceE
Q 016188 111 PDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190 (394)
Q Consensus 111 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~ 190 (394)
....+.++|||+|||+++++++|+++| +.||.|..+.++.++.+|+++|||||+|.+.++|..|+..|++..+.|+.|.
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 99 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKF-CDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 99 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHH-GGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 344567899999999999999999999 8999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCC
Q 016188 191 ISAATPKK 198 (394)
Q Consensus 191 v~~a~~~~ 198 (394)
|.++.++.
T Consensus 100 V~~a~~~~ 107 (110)
T 1oo0_B 100 VDWCFVKG 107 (110)
T ss_dssp EEESEESS
T ss_pred EEEcccCC
Confidence 99987654
No 160
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=4e-17 Score=124.17 Aligned_cols=88 Identities=57% Similarity=0.916 Sum_probs=81.3
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhh-CCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCee-ecCcc
Q 016188 111 PDAGPEHSIFVGDLAPDVTDYLLQETFRSQ-YPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVF-CSTRP 188 (394)
Q Consensus 111 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~-~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~-~~g~~ 188 (394)
....+.++|||+|||+++++++|+++| +. ||.|..+.++.++ +++++|||||+|.+.++|.+|++.|++.. +.|+.
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F-~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~ 81 (104)
T 2dhg_A 4 GSSGPEYSLFVGDLTPDVDDGMLYEFF-VKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKP 81 (104)
T ss_dssp CCSSCCCCEEEECCCTTCCHHHHHHHH-HHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHH-HHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEe
Confidence 344567899999999999999999999 88 9999999999998 89999999999999999999999999999 99999
Q ss_pred eEEeecCCCCCc
Q 016188 189 MRISAATPKKTT 200 (394)
Q Consensus 189 l~v~~a~~~~~~ 200 (394)
|.|.++.++...
T Consensus 82 l~v~~a~~~~~~ 93 (104)
T 2dhg_A 82 VRLSVAIPKASR 93 (104)
T ss_dssp CCCCBCCCCCSC
T ss_pred EEEEEccCCCcC
Confidence 999999776554
No 161
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.72 E-value=2.3e-17 Score=123.35 Aligned_cols=84 Identities=24% Similarity=0.481 Sum_probs=73.5
Q ss_pred CCCCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccc
Q 016188 16 HPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQ 95 (394)
Q Consensus 16 ~~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~ 95 (394)
.+...++.++|||+|||+++++++|+++|++||.|.+|+++++. ++++++||||+|.+.++|.+|++.|++..+.++.
T Consensus 9 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~- 86 (95)
T 2ywk_A 9 FPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRP- 86 (95)
T ss_dssp ---CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEE-
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCE-
Confidence 34566778999999999999999999999999999999999998 4899999999999999999999999999999855
Q ss_pred eeeeecc
Q 016188 96 NFRLNWA 102 (394)
Q Consensus 96 ~v~~~~~ 102 (394)
+.+.++
T Consensus 87 -l~V~~a 92 (95)
T 2ywk_A 87 -INVSGP 92 (95)
T ss_dssp -CEEECC
T ss_pred -EEEEEc
Confidence 444444
No 162
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=9.7e-17 Score=121.80 Aligned_cols=87 Identities=24% Similarity=0.458 Sum_probs=74.8
Q ss_pred CCCCCCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCc
Q 016188 14 HHHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGT 93 (394)
Q Consensus 14 ~~~~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~ 93 (394)
...+....+.++|||+|||+++++++|+++|++||.|.+|+|+.+.. .+++||||+|.+.++|.+|++.|++..|.++
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 83 (103)
T 2cq3_A 6 SGNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGR 83 (103)
T ss_dssp CCCSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 34455667789999999999999999999999999999999999862 3889999999999999999999999999985
Q ss_pred cceeeeecccC
Q 016188 94 EQNFRLNWASF 104 (394)
Q Consensus 94 ~~~v~~~~~~~ 104 (394)
.+ .+.++..
T Consensus 84 ~l--~v~~a~~ 92 (103)
T 2cq3_A 84 KI--EVNNATA 92 (103)
T ss_dssp EC--EEEECCS
T ss_pred EE--EEEEccc
Confidence 54 4555443
No 163
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.71 E-value=1e-17 Score=123.81 Aligned_cols=79 Identities=22% Similarity=0.476 Sum_probs=69.5
Q ss_pred ceEEEcCCCCcCCHHHHHHHHhhcC--CceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeeeec
Q 016188 24 RTLWIGDLQYWFDENYLSSCFAHTG--EVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNW 101 (394)
Q Consensus 24 ~~v~V~nLp~~~~e~~l~~~f~~~G--~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~~~ 101 (394)
.+|||+|||+++++++|+++|++|| .|.+|+++.++.+|+++|||||+|.+.++|.+|++.|++..+.|+.+.|....
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999899999999999999999999999999999999666555543
Q ss_pred c
Q 016188 102 A 102 (394)
Q Consensus 102 ~ 102 (394)
.
T Consensus 82 ~ 82 (90)
T 3p5t_L 82 K 82 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 164
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6e-17 Score=123.67 Aligned_cols=85 Identities=22% Similarity=0.315 Sum_probs=76.0
Q ss_pred CCCCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccc
Q 016188 16 HPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQ 95 (394)
Q Consensus 16 ~~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~ 95 (394)
.+....+.++|||+|||+++++++|+++|++||.|.+|.++.++.+++++|||||+|.+.++|.+|++.|++..+.++.+
T Consensus 16 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 95 (106)
T 1p27_B 16 GPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 95 (106)
T ss_dssp CBCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEE
Confidence 34455677899999999999999999999999999999999999889999999999999999999999999999998655
Q ss_pred eeeee
Q 016188 96 NFRLN 100 (394)
Q Consensus 96 ~v~~~ 100 (394)
.|...
T Consensus 96 ~V~~a 100 (106)
T 1p27_B 96 SVDWC 100 (106)
T ss_dssp EEEES
T ss_pred EEEee
Confidence 55443
No 165
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.4e-17 Score=124.63 Aligned_cols=78 Identities=26% Similarity=0.416 Sum_probs=72.1
Q ss_pred CCccEEEEcCCCC-CCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccCCC
Q 016188 231 ITNTTIFVGNLDP-NVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDV 309 (394)
Q Consensus 231 ~~~~~l~v~nl~~-~~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 309 (394)
.+.++|||+|||. .+++++|+++|++||.|.++.+. +|||||+|.+.++|.+|+..|||..+.|+.|+|++++++..
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 85 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNAR 85 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCCC
Confidence 4568999999998 99999999999999999999997 89999999999999999999999999999999999987654
Q ss_pred C
Q 016188 310 T 310 (394)
Q Consensus 310 ~ 310 (394)
.
T Consensus 86 ~ 86 (96)
T 2kvi_A 86 P 86 (96)
T ss_dssp -
T ss_pred C
Confidence 3
No 166
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=6.5e-17 Score=122.77 Aligned_cols=86 Identities=22% Similarity=0.401 Sum_probs=75.4
Q ss_pred CCCCCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCcc
Q 016188 15 HHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTE 94 (394)
Q Consensus 15 ~~~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~ 94 (394)
..+....+.++|||+|||+++++++|+++|++|| |.+|++++++.+++++|||||+|.+.++|.+|+ .|++..|.++.
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 84 (103)
T 2dng_A 7 GKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRS 84 (103)
T ss_dssp CCCCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CCCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeE
Confidence 3445567789999999999999999999999997 999999999988999999999999999999999 89999999855
Q ss_pred ceeeeecccC
Q 016188 95 QNFRLNWASF 104 (394)
Q Consensus 95 ~~v~~~~~~~ 104 (394)
+.+.++..
T Consensus 85 --l~V~~a~~ 92 (103)
T 2dng_A 85 --LRVDIAEG 92 (103)
T ss_dssp --CEEEECCC
T ss_pred --EEEEEecC
Confidence 45555443
No 167
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.71 E-value=5.5e-17 Score=124.74 Aligned_cols=80 Identities=21% Similarity=0.468 Sum_probs=74.2
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEE
Q 016188 230 DITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISW 303 (394)
Q Consensus 230 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 303 (394)
....++|||+|||..+++++|+++|++||.|.++.++.+ +|||||+|.+.++|.+|+..|||..|+|+.|+|++
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 345689999999999999999999999999999999865 59999999999999999999999999999999999
Q ss_pred cccCCC
Q 016188 304 GRKQDV 309 (394)
Q Consensus 304 a~~~~~ 309 (394)
++++..
T Consensus 103 a~~~~~ 108 (110)
T 1oo0_B 103 CFVKGP 108 (110)
T ss_dssp SEESSC
T ss_pred cccCCC
Confidence 987653
No 168
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.71 E-value=2.5e-17 Score=122.38 Aligned_cols=79 Identities=29% Similarity=0.447 Sum_probs=73.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC----CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEccc
Q 016188 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG----RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRK 306 (394)
Q Consensus 231 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 306 (394)
...++|||+|||..+++++|+++|++||.|.++.|..+ +++|||+|.+.++|.+|+..||+..|+|+.|+|+++++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 45689999999999999999999999999999999864 68999999999999999999999999999999999987
Q ss_pred CCC
Q 016188 307 QDV 309 (394)
Q Consensus 307 ~~~ 309 (394)
...
T Consensus 86 ~~~ 88 (92)
T 2dgv_A 86 ASG 88 (92)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
No 169
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=2.1e-17 Score=125.05 Aligned_cols=77 Identities=22% Similarity=0.424 Sum_probs=72.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeecCC
Q 016188 117 HSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATP 196 (394)
Q Consensus 117 ~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a~~ 196 (394)
++|||+|||+++++++|+++| +.||.|..+.++.+ ++|||||+|.+.++|+.|++.|++..+.|+.|.|.++.+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAF-SYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHH-HHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccC
Confidence 479999999999999999999 89999999999876 689999999999999999999999999999999999987
Q ss_pred CCC
Q 016188 197 KKT 199 (394)
Q Consensus 197 ~~~ 199 (394)
+..
T Consensus 75 ~~~ 77 (101)
T 2hvz_A 75 MPR 77 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 170
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=7.6e-17 Score=122.37 Aligned_cols=87 Identities=22% Similarity=0.446 Sum_probs=80.4
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceE
Q 016188 111 PDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190 (394)
Q Consensus 111 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~ 190 (394)
....+.++|||+|||+++++++|+++| +.|| |..|.++.++.+++++|||||+|.+.++|++|+ .|++..+.|+.|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F-~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 86 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIF-KDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLR 86 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHT-TTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHH-HhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEE
Confidence 344568899999999999999999999 8997 999999999999999999999999999999999 9999999999999
Q ss_pred EeecCCCCCc
Q 016188 191 ISAATPKKTT 200 (394)
Q Consensus 191 v~~a~~~~~~ 200 (394)
|.++.++...
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2dng_A 87 VDIAEGRKQD 96 (103)
T ss_dssp EEECCCCCCC
T ss_pred EEEecCCCCC
Confidence 9999876543
No 171
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=9.5e-17 Score=121.29 Aligned_cols=83 Identities=13% Similarity=0.166 Sum_probs=69.3
Q ss_pred CCCCCCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCC--CC
Q 016188 14 HHHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTP--MP 91 (394)
Q Consensus 14 ~~~~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~--~~ 91 (394)
..++....+.++|||+|||+++++++|+++|++||.|.+|+++++ ++||||+|.+.++|.+|++.|++.. +.
T Consensus 6 ~~~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~ 79 (104)
T 1wex_A 6 SGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIA 79 (104)
T ss_dssp CCSCCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSS
T ss_pred CCCCCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 334456677899999999999999999999999999999998874 5999999999999999999887655 66
Q ss_pred CccceeeeecccC
Q 016188 92 GTEQNFRLNWASF 104 (394)
Q Consensus 92 ~~~~~v~~~~~~~ 104 (394)
++ .+.+.++..
T Consensus 80 Gr--~l~V~~a~~ 90 (104)
T 1wex_A 80 GQ--QAFFNYSTS 90 (104)
T ss_dssp SS--BCEEEECSS
T ss_pred CE--EEEEEEccC
Confidence 64 555555543
No 172
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=8e-17 Score=124.48 Aligned_cols=89 Identities=24% Similarity=0.276 Sum_probs=82.4
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCee--------EEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCe
Q 016188 111 PDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVR--------GAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGV 182 (394)
Q Consensus 111 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~--------~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~ 182 (394)
....+.++|||+|||+++++++|+++| +.||.|. .|.++.++.+++++|||||+|.+.++|++|++.|++.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFF-KQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHH-TTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHH-HhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 345568999999999999999999999 8999999 6999999899999999999999999999999999999
Q ss_pred eecCcceEEeecCCCCCc
Q 016188 183 FCSTRPMRISAATPKKTT 200 (394)
Q Consensus 183 ~~~g~~l~v~~a~~~~~~ 200 (394)
.+.|+.|.|.++.++...
T Consensus 89 ~~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 89 DFQGSKLKVSLARKKPPM 106 (113)
T ss_dssp EETTEECEEECSSCCCCS
T ss_pred ccCCCEEEEEECCCCCCC
Confidence 999999999999877553
No 173
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.71 E-value=7.4e-17 Score=121.50 Aligned_cols=83 Identities=17% Similarity=0.317 Sum_probs=75.7
Q ss_pred CCCCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceE--------EEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCC
Q 016188 16 HPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVS--------IKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNG 87 (394)
Q Consensus 16 ~~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~--------v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~ 87 (394)
.+..+...++|||+|||+++++++|+++|++||.|.+ |+++.++.+|+++|||||+|.+.++|.+|++.|++
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g 85 (99)
T 2la6_A 6 HHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG 85 (99)
T ss_dssp SCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 3456677899999999999999999999999999999 99999988899999999999999999999999999
Q ss_pred CCCCCccceee
Q 016188 88 TPMPGTEQNFR 98 (394)
Q Consensus 88 ~~~~~~~~~v~ 98 (394)
..+.++.+.|.
T Consensus 86 ~~~~g~~l~V~ 96 (99)
T 2la6_A 86 KEFSGNPIKVS 96 (99)
T ss_dssp CBSSSSBCEEE
T ss_pred CEeCCcEEEEE
Confidence 99999665554
No 174
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=5.9e-17 Score=124.66 Aligned_cols=78 Identities=21% Similarity=0.353 Sum_probs=72.8
Q ss_pred CCccEEEEcCCCCCCCHHHHH---HHhcccCCeEEEEEeCCC---------cEEEEEeCchHHHHHHHHHhCCceeCcEE
Q 016188 231 ITNTTIFVGNLDPNVTEEELK---QTFLHFGEIVNVKIPMGR---------GCGFVQFAARASAEEAILRMQGHMIGQQQ 298 (394)
Q Consensus 231 ~~~~~l~v~nl~~~~t~~~l~---~~F~~~G~i~~~~i~~~~---------g~~fV~f~~~~~a~~a~~~l~g~~~~g~~ 298 (394)
...++|||+|||+.+++++|+ ++|++||.|.++.|..++ |||||+|.+.++|.+|++.|||..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 346899999999999999999 999999999999998653 79999999999999999999999999999
Q ss_pred EEEEEcccCC
Q 016188 299 VRISWGRKQD 308 (394)
Q Consensus 299 l~v~~a~~~~ 308 (394)
|+|++++++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998875
No 175
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=7.6e-17 Score=122.62 Aligned_cols=87 Identities=23% Similarity=0.434 Sum_probs=80.5
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCC-CCCccEEEEEeCCHHHHHHHHHhhCCeeecCcce
Q 016188 111 PDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNT-GRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189 (394)
Q Consensus 111 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~t-g~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l 189 (394)
....+.++|||+|||+++++++|+++| +.|| |..|.++.++.+ ++++|||||+|.+.++|++|+ .|++..+.|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 86 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFF-RGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRI 86 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHT-TTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEEC
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHH-HHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEE
Confidence 344567999999999999999999999 8999 999999999887 999999999999999999999 999999999999
Q ss_pred EEeecCCCCCc
Q 016188 190 RISAATPKKTT 200 (394)
Q Consensus 190 ~v~~a~~~~~~ 200 (394)
.|.++.++...
T Consensus 87 ~V~~a~~~~~~ 97 (104)
T 1wi8_A 87 RVDVADQAQDK 97 (104)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEccCCCCC
Confidence 99999877654
No 176
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5e-17 Score=122.83 Aligned_cols=81 Identities=15% Similarity=0.096 Sum_probs=75.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEe
Q 016188 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRIS 192 (394)
Q Consensus 113 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~ 192 (394)
....++|||+|||+++|+++|+++| +.||.|.+|.++.++. |+++|||||+|.+.++|..|+. +++..+.|+.|.|.
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F-~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWL-EDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLIL 84 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHH-HTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHH-hhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEE
Confidence 3457899999999999999999999 8999999999999987 9999999999999999999997 89999999999999
Q ss_pred ecCC
Q 016188 193 AATP 196 (394)
Q Consensus 193 ~a~~ 196 (394)
++..
T Consensus 85 ~~~~ 88 (103)
T 1s79_A 85 FKDD 88 (103)
T ss_dssp EHHH
T ss_pred EchH
Confidence 8654
No 177
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.7e-17 Score=121.55 Aligned_cols=82 Identities=20% Similarity=0.292 Sum_probs=68.4
Q ss_pred CCCCCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCC--CCCCC
Q 016188 15 HHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNG--TPMPG 92 (394)
Q Consensus 15 ~~~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~--~~~~~ 92 (394)
+.-.++.+.++|||+|||+++++++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+|++.|++ ..+.|
T Consensus 8 ~~~~~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G 81 (105)
T 1sjq_A 8 HHHGSGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRG 81 (105)
T ss_dssp ----CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETT
T ss_pred cccCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 33446778899999999999999999999999999999999876 49999999999999999998875 56777
Q ss_pred ccceeeeecccC
Q 016188 93 TEQNFRLNWASF 104 (394)
Q Consensus 93 ~~~~v~~~~~~~ 104 (394)
..+.+.++..
T Consensus 82 --r~l~V~~A~~ 91 (105)
T 1sjq_A 82 --QPIYIQFSNH 91 (105)
T ss_dssp --EECCBCCCSS
T ss_pred --EEEEEEEcCC
Confidence 5566666654
No 178
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.71 E-value=6.8e-17 Score=123.79 Aligned_cols=87 Identities=26% Similarity=0.469 Sum_probs=76.5
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceE
Q 016188 111 PDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190 (394)
Q Consensus 111 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~ 190 (394)
....+.++|||+|||+++++++|+++| +.||.|..|.++.++.+|+++|||||+|.+.++|++|++.+ +..+.|+.|.
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F-~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~ 97 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYF-GQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTID 97 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHH-TTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHH-HccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEE
Confidence 344567899999999999999999999 89999999999999999999999999999999999999876 5899999999
Q ss_pred EeecCCCCC
Q 016188 191 ISAATPKKT 199 (394)
Q Consensus 191 v~~a~~~~~ 199 (394)
|.++.++..
T Consensus 98 V~~a~~~~~ 106 (109)
T 2rs2_A 98 PKVAFPRRA 106 (109)
T ss_dssp EEECCCCCC
T ss_pred EEEccCCCC
Confidence 999987654
No 179
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.71 E-value=2.5e-17 Score=127.74 Aligned_cols=105 Identities=14% Similarity=0.183 Sum_probs=88.0
Q ss_pred cCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeee
Q 016188 20 LEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRL 99 (394)
Q Consensus 20 ~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~ 99 (394)
++..++|||+|||+++++++|+++|++||.|.+|.++.+ +.++|||||+|.+.++|.+|++.|++..+.++.+. +
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~--v 79 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLV--V 79 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCE--E
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE--E
Confidence 456789999999999999999999999999999999875 45689999999999999999999999999986544 4
Q ss_pred ecccCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCC
Q 016188 100 NWASFGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPS 143 (394)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~ 143 (394)
.++...... .+++...++++|.++| ++||.
T Consensus 80 ~~a~~~~~~-------------~~~~~~~~~~~l~~~~-~~~g~ 109 (115)
T 3lqv_A 80 LYYNANRAF-------------QKMDTKKKEEQLKLLK-EKYGI 109 (115)
T ss_dssp EECCHHHHT-------------TTSCHHHHHHHHHHHH-HHHCC
T ss_pred EEecCChhh-------------hhhhHhHhHHHHHHHH-HHhCC
Confidence 444322111 5677788899999999 78884
No 180
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.71 E-value=7.9e-17 Score=118.26 Aligned_cols=81 Identities=27% Similarity=0.470 Sum_probs=75.4
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEE
Q 016188 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191 (394)
Q Consensus 112 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v 191 (394)
...+.++|||+|||+++++++|+++| +.||.|..+.++.++.+|+++|||||+|.+.++|.+|++ +++..+.|+.|.|
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v 84 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYF-TKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDP 84 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHH-TTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHH-HhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEE
Confidence 44568899999999999999999999 899999999999999999999999999999999999995 5888899999999
Q ss_pred eec
Q 016188 192 SAA 194 (394)
Q Consensus 192 ~~a 194 (394)
.+|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 181
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.8e-17 Score=125.27 Aligned_cols=88 Identities=20% Similarity=0.349 Sum_probs=77.4
Q ss_pred CCCCCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCce--------EEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcC
Q 016188 15 HHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVV--------SIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYN 86 (394)
Q Consensus 15 ~~~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~--------~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~ 86 (394)
..+....+.++|||+|||+++++++|+++|++||.|. .|+|+.++.+++++|||||+|.+.++|.+|++.|+
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 86 (113)
T 2cpe_A 7 GDPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFD 86 (113)
T ss_dssp CCCCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHT
T ss_pred CCcccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcC
Confidence 3445667889999999999999999999999999998 69999998899999999999999999999999999
Q ss_pred CCCCCCccceeeeecccC
Q 016188 87 GTPMPGTEQNFRLNWASF 104 (394)
Q Consensus 87 ~~~~~~~~~~v~~~~~~~ 104 (394)
+..|.++. +.+.++..
T Consensus 87 g~~~~g~~--l~V~~a~~ 102 (113)
T 2cpe_A 87 GKDFQGSK--LKVSLARK 102 (113)
T ss_dssp TCEETTEE--CEEECSSC
T ss_pred CCccCCCE--EEEEECCC
Confidence 99999854 55555543
No 182
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.71 E-value=8.5e-17 Score=123.00 Aligned_cols=83 Identities=25% Similarity=0.499 Sum_probs=75.2
Q ss_pred CCCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccce
Q 016188 17 PMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQN 96 (394)
Q Consensus 17 ~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~ 96 (394)
+....+.++|||+|||+++++++|+++|++||.|.+|++++++.+++++|||||+|.+.++|.+|++.|++..+.++.+.
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34566779999999999999999999999999999999999988899999999999999999999999999999996554
Q ss_pred eee
Q 016188 97 FRL 99 (394)
Q Consensus 97 v~~ 99 (394)
|..
T Consensus 100 V~~ 102 (108)
T 2jrs_A 100 VGH 102 (108)
T ss_dssp EEC
T ss_pred EEE
Confidence 443
No 183
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=7.7e-17 Score=121.78 Aligned_cols=79 Identities=18% Similarity=0.196 Sum_probs=72.2
Q ss_pred CcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceee
Q 016188 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (394)
Q Consensus 19 ~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~ 98 (394)
...+.++|||+|||+++++++|+++|++||.|.+|.++++.. |+++|||||+|.+.++|.+|++ +++..+.++.+.|.
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLIL 84 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEE
Confidence 345678999999999999999999999999999999999985 9999999999999999999998 89999999776665
Q ss_pred e
Q 016188 99 L 99 (394)
Q Consensus 99 ~ 99 (394)
.
T Consensus 85 ~ 85 (103)
T 1s79_A 85 F 85 (103)
T ss_dssp E
T ss_pred E
Confidence 4
No 184
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.71 E-value=1.3e-17 Score=145.04 Aligned_cols=76 Identities=21% Similarity=0.327 Sum_probs=70.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhcccC--CeEEEEEeCC------CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEE
Q 016188 232 TNTTIFVGNLDPNVTEEELKQTFLHFG--EIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISW 303 (394)
Q Consensus 232 ~~~~l~v~nl~~~~t~~~l~~~F~~~G--~i~~~~i~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 303 (394)
..++|||+||+..+|+++|+++|++|| .|.+|.|+.+ +|||||+|.+.++|.+||+.||++.|+|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 457999999999999999999999999 9999999875 58999999999999999999999999999999999
Q ss_pred cccC
Q 016188 304 GRKQ 307 (394)
Q Consensus 304 a~~~ 307 (394)
++++
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 9743
No 185
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=5.6e-17 Score=123.61 Aligned_cols=89 Identities=29% Similarity=0.413 Sum_probs=82.0
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcce
Q 016188 110 RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189 (394)
Q Consensus 110 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l 189 (394)
.....+.++|||+|||+++++++|+++| +.||.|..|.++.++.+++++|||||+|.+.++|++|++. ++..+.|+.|
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l 87 (105)
T 2dh8_A 10 NSGADEIGKLFVGGLDWSTTQETLRSYF-SQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNI 87 (105)
T ss_dssp CCCSSSSSEECCBSCCTTCCHHHHHHHH-HTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEE
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEE
Confidence 3445668999999999999999999999 8999999999999999999999999999999999999988 9999999999
Q ss_pred EEeecCCCCCc
Q 016188 190 RISAATPKKTT 200 (394)
Q Consensus 190 ~v~~a~~~~~~ 200 (394)
.|.++.++...
T Consensus 88 ~V~~a~~~~~~ 98 (105)
T 2dh8_A 88 DPKPCTPRGMQ 98 (105)
T ss_dssp BCCCSCCSSCC
T ss_pred EEEEccCCCCC
Confidence 99999876543
No 186
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.70 E-value=9.3e-17 Score=128.99 Aligned_cols=89 Identities=25% Similarity=0.503 Sum_probs=82.7
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceE
Q 016188 111 PDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190 (394)
Q Consensus 111 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~ 190 (394)
......++|||+|||+++++++|+++| +.||.|..|.++.++.+++++|||||+|.+.++|.+|++.|++..+.|+.|.
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 115 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLF-ERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK 115 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHH-HHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 344567899999999999999999999 8999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCc
Q 016188 191 ISAATPKKTT 200 (394)
Q Consensus 191 v~~a~~~~~~ 200 (394)
|.++.++...
T Consensus 116 v~~a~~~~~~ 125 (139)
T 1u6f_A 116 VALAASGHQR 125 (139)
T ss_dssp EEESSCCCCC
T ss_pred EEECCCCCCC
Confidence 9999877554
No 187
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8.9e-17 Score=122.23 Aligned_cols=83 Identities=16% Similarity=0.316 Sum_probs=73.2
Q ss_pred CCCCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCC-CCCcceEEEEEcCHHHHHHHHHHcCCCCCCCcc
Q 016188 16 HPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKIT-GQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTE 94 (394)
Q Consensus 16 ~~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~-g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~ 94 (394)
.+....+.++|||+|||+++++++|+++|++|| |.+|+|+.++.+ ++++|||||+|.+.++|.+|+ .|++..|.++.
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 85 (104)
T 1wi8_A 8 SRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKR 85 (104)
T ss_dssp CCCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEE
T ss_pred CCCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcE
Confidence 344556779999999999999999999999999 999999999877 899999999999999999999 99999999855
Q ss_pred ceeeee
Q 016188 95 QNFRLN 100 (394)
Q Consensus 95 ~~v~~~ 100 (394)
+.|...
T Consensus 86 l~V~~a 91 (104)
T 1wi8_A 86 IRVDVA 91 (104)
T ss_dssp CEEEEC
T ss_pred EEEEEc
Confidence 444443
No 188
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.70 E-value=7e-18 Score=160.42 Aligned_cols=159 Identities=14% Similarity=0.233 Sum_probs=109.6
Q ss_pred HHHHHhhcCCceEEEEeecCC--CCCCcceE-----EEEEcCHHHHHHHHHHcCCCCCCCccc---------eeeeeccc
Q 016188 40 LSSCFAHTGEVVSIKIIRNKI--TGQPEGYG-----FVEFVSHAAAERVLQTYNGTPMPGTEQ---------NFRLNWAS 103 (394)
Q Consensus 40 l~~~f~~~G~v~~v~i~~~~~--~g~~~g~a-----fV~f~~~e~A~~a~~~l~~~~~~~~~~---------~v~~~~~~ 103 (394)
|..+|.++++|..|..+.... ......++ |+.|.+..++..++..++......... .+......
T Consensus 9 L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~~ 88 (437)
T 3pgw_S 9 LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELKM 88 (437)
T ss_pred HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 788999999988774332210 11223333 777776655544432222111110000 00000000
Q ss_pred -CCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCe
Q 016188 104 -FGIGEKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGV 182 (394)
Q Consensus 104 -~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~ 182 (394)
...........+.++|||+|||+.+|+++|.++| +.||.|..|.|+.++.+++++|||||+|.+.++|..||..||+.
T Consensus 89 ~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F-~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~ 167 (437)
T 3pgw_S 89 WDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREF-EVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGK 167 (437)
T ss_pred cCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHH-HHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCC
Confidence 0011112233457899999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred eecCcceEEeecCCCCC
Q 016188 183 FCSTRPMRISAATPKKT 199 (394)
Q Consensus 183 ~~~g~~l~v~~a~~~~~ 199 (394)
.|.|+.|.|.++.....
T Consensus 168 ~i~gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 168 KIDGRRVLVDVERGRTV 184 (437)
T ss_pred EECCEEEEEEEeCCCCC
Confidence 99999999999986544
No 189
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.3e-16 Score=119.68 Aligned_cols=88 Identities=27% Similarity=0.496 Sum_probs=79.5
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcce
Q 016188 110 RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189 (394)
Q Consensus 110 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l 189 (394)
.....+.++|||+|||+++++++|+++| +.||.|..|.++.++. .++|||||+|.+.++|++|++.|++..+.|+.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cqi_A 9 MEDDGQPRTLYVGNLSRDVTEVLILQLF-SQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEV 85 (103)
T ss_dssp CCCSCCCCEEEEESCCTTCCHHHHHHHH-HHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCEEEEeCCCccCCHHHHHHHH-HhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeE
Confidence 3445668999999999999999999999 8999999999999854 378999999999999999999999999999999
Q ss_pred EEeecCCCCCc
Q 016188 190 RISAATPKKTT 200 (394)
Q Consensus 190 ~v~~a~~~~~~ 200 (394)
.|.++.++...
T Consensus 86 ~V~~a~~~~~~ 96 (103)
T 2cqi_A 86 KVNWATTPSSQ 96 (103)
T ss_dssp EEEECCCTTCC
T ss_pred EEEECCCCccc
Confidence 99999876543
No 190
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=3.3e-17 Score=123.21 Aligned_cols=81 Identities=14% Similarity=0.188 Sum_probs=73.1
Q ss_pred CcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceee
Q 016188 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (394)
Q Consensus 19 ~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~ 98 (394)
.....++|||+|||+++++++|+++|.+||.|.++.++.++.++++++||||+|.+.++|++|++.|++..|.++.+.|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 44566899999999999999999999999999988888888889999999999999999999999999999999655544
Q ss_pred e
Q 016188 99 L 99 (394)
Q Consensus 99 ~ 99 (394)
.
T Consensus 91 ~ 91 (98)
T 2cqp_A 91 L 91 (98)
T ss_dssp E
T ss_pred E
Confidence 4
No 191
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.70 E-value=5.8e-17 Score=119.28 Aligned_cols=83 Identities=23% Similarity=0.388 Sum_probs=77.5
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCC-CccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEee
Q 016188 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGR-SKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISA 193 (394)
Q Consensus 115 ~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~-~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~ 193 (394)
..++|||+|||+++++++|+++| +.||.|..+.++.++.++. ++|+|||+|.+.++|.+|++.|++..+.|+.|.|.+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIF-STYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHH-HTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHH-HhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 46789999999999999999999 8999999999999987665 999999999999999999999999999999999999
Q ss_pred cCCCC
Q 016188 194 ATPKK 198 (394)
Q Consensus 194 a~~~~ 198 (394)
+.+..
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 97654
No 192
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.70 E-value=7.7e-17 Score=118.90 Aligned_cols=80 Identities=20% Similarity=0.424 Sum_probs=76.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeecC
Q 016188 116 EHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAAT 195 (394)
Q Consensus 116 ~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a~ 195 (394)
.++|||+|||+++++++|+++| +.||.|..+.++.++.+++++|||||+|.+.++|++|+ .+++..+.|+.|.|.++.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHF-HGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHH-GGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHH-HhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 5789999999999999999999 89999999999999989999999999999999999999 999999999999999987
Q ss_pred CC
Q 016188 196 PK 197 (394)
Q Consensus 196 ~~ 197 (394)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 193
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.70 E-value=7.3e-17 Score=120.56 Aligned_cols=84 Identities=26% Similarity=0.498 Sum_probs=77.7
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceE
Q 016188 111 PDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190 (394)
Q Consensus 111 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~ 190 (394)
....+.++|||+|||+++++++|+++| +.||.|..+.++.++. ++++|||||+|.+.++|++|++.|++..+.|+.|.
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F-~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELF-LQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPIN 88 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHH-GGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHH-HhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEE
Confidence 344567899999999999999999999 8999999999999976 99999999999999999999999999999999999
Q ss_pred EeecCC
Q 016188 191 ISAATP 196 (394)
Q Consensus 191 v~~a~~ 196 (394)
|.++..
T Consensus 89 V~~a~~ 94 (95)
T 2ywk_A 89 VSGPSS 94 (95)
T ss_dssp EECCCC
T ss_pred EEEcCC
Confidence 998753
No 194
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=2e-16 Score=120.27 Aligned_cols=82 Identities=27% Similarity=0.420 Sum_probs=74.0
Q ss_pred CcCCcceEEEcCCCCcCCHHHHHHHHhh-cCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCC-CCCccce
Q 016188 19 TLEEVRTLWIGDLQYWFDENYLSSCFAH-TGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTP-MPGTEQN 96 (394)
Q Consensus 19 ~~~~~~~v~V~nLp~~~~e~~l~~~f~~-~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~-~~~~~~~ 96 (394)
...+.++|||+|||+++++++|+++|++ ||.|.+|+|+.+. ++++++||||+|.+.++|.+|++.|++.. +.++.+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l- 82 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV- 82 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCC-
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeE-
Confidence 4467789999999999999999999999 9999999999998 99999999999999999999999999999 998654
Q ss_pred eeeeccc
Q 016188 97 FRLNWAS 103 (394)
Q Consensus 97 v~~~~~~ 103 (394)
.+.++.
T Consensus 83 -~v~~a~ 88 (104)
T 2dhg_A 83 -RLSVAI 88 (104)
T ss_dssp -CCCBCC
T ss_pred -EEEEcc
Confidence 444443
No 195
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.70 E-value=5.3e-17 Score=126.53 Aligned_cols=83 Identities=29% Similarity=0.426 Sum_probs=78.4
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceE
Q 016188 111 PDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190 (394)
Q Consensus 111 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~ 190 (394)
....+.++|||+|||+++++++|+++| +.||.|..+.++.++.+++++|||||+|.+.++|++|++.|++..+.|+.|.
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTF-LPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHT-TTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 345567899999999999999999999 8999999999999998999999999999999999999999999999999999
Q ss_pred Eeec
Q 016188 191 ISAA 194 (394)
Q Consensus 191 v~~a 194 (394)
|.++
T Consensus 114 V~~a 117 (118)
T 2khc_A 114 VQLK 117 (118)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9886
No 196
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.70 E-value=1.3e-16 Score=122.02 Aligned_cols=83 Identities=31% Similarity=0.427 Sum_probs=78.1
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceE
Q 016188 111 PDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190 (394)
Q Consensus 111 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~ 190 (394)
....+.++|||+|||+++++++|+++| +.||.|..+.++.++ +|+++|||||+|.+.++|++|++.|++..+.|+.|.
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELF-AEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHH-HTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 344568899999999999999999999 899999999999998 899999999999999999999999999999999999
Q ss_pred EeecC
Q 016188 191 ISAAT 195 (394)
Q Consensus 191 v~~a~ 195 (394)
|.++.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99875
No 197
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.70 E-value=1.7e-16 Score=117.86 Aligned_cols=81 Identities=26% Similarity=0.439 Sum_probs=72.4
Q ss_pred CCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCcccee
Q 016188 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNF 97 (394)
Q Consensus 18 ~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v 97 (394)
....+.++|||+|||+++++++|+++|++||.|.+|++.++ ++++++||||+|.+.++|.+|++.|++..+.++.+.|
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 80 (92)
T 2dgv_A 3 SGSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDV 80 (92)
T ss_dssp CSSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34567799999999999999999999999999999999984 7889999999999999999999999999999965555
Q ss_pred eee
Q 016188 98 RLN 100 (394)
Q Consensus 98 ~~~ 100 (394)
...
T Consensus 81 ~~a 83 (92)
T 2dgv_A 81 RID 83 (92)
T ss_dssp EEC
T ss_pred EEc
Confidence 443
No 198
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=2.1e-16 Score=117.05 Aligned_cols=83 Identities=19% Similarity=0.295 Sum_probs=77.1
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEE
Q 016188 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191 (394)
Q Consensus 112 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v 191 (394)
.....++|||+|||+++++++|+++| +.| .|..+.++.+ .+|+++|||||+|.+.++|.+|++ +++..+.|+.|.|
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F-~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v 81 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFL-APL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEV 81 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHH-TTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHH-hhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEE
Confidence 34457899999999999999999999 899 8999999999 779999999999999999999998 9999999999999
Q ss_pred eecCCCC
Q 016188 192 SAATPKK 198 (394)
Q Consensus 192 ~~a~~~~ 198 (394)
.++.++.
T Consensus 82 ~~a~~~~ 88 (91)
T 2dgw_A 82 FREKSGP 88 (91)
T ss_dssp EEESSCC
T ss_pred EECCcCC
Confidence 9997764
No 199
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.70 E-value=3.4e-17 Score=123.42 Aligned_cols=80 Identities=19% Similarity=0.285 Sum_probs=73.4
Q ss_pred CCcceEEEcCCCC------cCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCC-c
Q 016188 21 EEVRTLWIGDLQY------WFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPG-T 93 (394)
Q Consensus 21 ~~~~~v~V~nLp~------~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~-~ 93 (394)
...++|||+|||. ++++++|+++|++||.|.+|+|++++.+|+++|||||+|.+.++|.+|++.||+..+.+ +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3468999999999 99999999999999999999999999889999999999999999999999999999998 7
Q ss_pred cceeeee
Q 016188 94 EQNFRLN 100 (394)
Q Consensus 94 ~~~v~~~ 100 (394)
.+.|...
T Consensus 84 ~l~V~~a 90 (100)
T 3ns6_A 84 RLFLYTM 90 (100)
T ss_dssp BCEEEES
T ss_pred EEEEEEC
Confidence 6655543
No 200
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.1e-17 Score=124.17 Aligned_cols=83 Identities=28% Similarity=0.592 Sum_probs=75.1
Q ss_pred CCCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccce
Q 016188 17 PMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQN 96 (394)
Q Consensus 17 ~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~ 96 (394)
+...++.++|||+|||+++++++|+++|++||.|.+|+++.++.+|+++|||||+|.+.++|.+|++.|++..+.++.+.
T Consensus 2 p~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (104)
T 1p1t_A 2 PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALR 81 (104)
T ss_dssp CCSHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBE
T ss_pred CCcCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 34556779999999999999999999999999999999999988899999999999999999999999999999986554
Q ss_pred eee
Q 016188 97 FRL 99 (394)
Q Consensus 97 v~~ 99 (394)
|..
T Consensus 82 v~~ 84 (104)
T 1p1t_A 82 VDN 84 (104)
T ss_dssp EEE
T ss_pred EEe
Confidence 443
No 201
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.2e-17 Score=124.76 Aligned_cols=86 Identities=33% Similarity=0.553 Sum_probs=80.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEee
Q 016188 114 GPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISA 193 (394)
Q Consensus 114 ~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~ 193 (394)
.+.++|||+|||+++++++|+++| +.||.|..+.++.++.+|+++|||||+|.+.++|++|++.|++..+.|+.|.|.+
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f-~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIF-SEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHH-HTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCccEEEEeCCCCcCCHHHHHHHH-HhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 346899999999999999999999 8999999999999998999999999999999999999999999999999999999
Q ss_pred cCCCCCc
Q 016188 194 ATPKKTT 200 (394)
Q Consensus 194 a~~~~~~ 200 (394)
+.++...
T Consensus 85 a~~~~~~ 91 (104)
T 1p1t_A 85 AASEKNK 91 (104)
T ss_dssp TTCTTHH
T ss_pred CCCccch
Confidence 9876554
No 202
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.69 E-value=1.7e-17 Score=124.12 Aligned_cols=81 Identities=12% Similarity=0.163 Sum_probs=71.3
Q ss_pred CcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceee
Q 016188 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (394)
Q Consensus 19 ~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~ 98 (394)
.....++|||+|||+++++++|+++|++||.|.+++++.++.++++++||||+|.+.++|++|++.|++..|.++.+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~ 90 (95)
T 2ek1_A 11 GKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLS 90 (95)
T ss_dssp ----CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEE
Confidence 33456899999999999999999999999999999999988889999999999999999999999999999999665554
Q ss_pred e
Q 016188 99 L 99 (394)
Q Consensus 99 ~ 99 (394)
.
T Consensus 91 ~ 91 (95)
T 2ek1_A 91 G 91 (95)
T ss_dssp C
T ss_pred e
Confidence 4
No 203
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.69 E-value=8.8e-17 Score=131.10 Aligned_cols=82 Identities=22% Similarity=0.291 Sum_probs=77.4
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhhCC--CeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEe
Q 016188 115 PEHSIFVGDLAPDVTDYLLQETFRSQYP--SVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRIS 192 (394)
Q Consensus 115 ~~~~l~v~nlp~~~t~~~l~~~f~~~~G--~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~ 192 (394)
..++|||+|||+++++++|+++| +.|| .|.+|.++.|+.+|+++|||||+|.+.++|++|++.|++..+.|+.|.|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F-~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVI-RSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHH-HHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHH-HHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 46799999999999999999999 8999 99999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 016188 193 AATPK 197 (394)
Q Consensus 193 ~a~~~ 197 (394)
++.++
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 98754
No 204
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.7e-16 Score=120.59 Aligned_cols=86 Identities=16% Similarity=0.235 Sum_probs=73.5
Q ss_pred CCCCCCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCc
Q 016188 14 HHHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGT 93 (394)
Q Consensus 14 ~~~~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~ 93 (394)
...+....+.++|||+|||+++++++|+++|++||.|.+|++..+ +.+++||||+|.+.++|++|++.|++..|.++
T Consensus 13 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 89 (109)
T 1x4a_A 13 VIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGY 89 (109)
T ss_dssp CSSCCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 344456677899999999999999999999999999999999654 45789999999999999999999999999885
Q ss_pred cceeeeecccC
Q 016188 94 EQNFRLNWASF 104 (394)
Q Consensus 94 ~~~v~~~~~~~ 104 (394)
.+.+.++..
T Consensus 90 --~l~V~~a~~ 98 (109)
T 1x4a_A 90 --RLRVEFPRS 98 (109)
T ss_dssp --ECEEECCCC
T ss_pred --EEEEEEccc
Confidence 455555543
No 205
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=7.6e-17 Score=121.21 Aligned_cols=84 Identities=17% Similarity=0.220 Sum_probs=78.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEe
Q 016188 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRIS 192 (394)
Q Consensus 113 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~ 192 (394)
....++|||+|||+++++++|+++| +.||.|..+.++.++.+|+++|||||+|.+.++|++|++.|++..+.|+.|.|.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F-~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFF-YGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHT-TTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 4457889999999999999999999 899999999999998899999999999999999999999999999999999999
Q ss_pred ecCCC
Q 016188 193 AATPK 197 (394)
Q Consensus 193 ~a~~~ 197 (394)
++...
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98654
No 206
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.6e-16 Score=117.69 Aligned_cols=77 Identities=18% Similarity=0.255 Sum_probs=71.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-----CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcc
Q 016188 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG-----RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (394)
Q Consensus 231 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 305 (394)
...++|||+|||..+++++|+++|+.| .|.++.|+.+ +|+|||+|.+.++|.+|+. ||+..|+|+.|+|.+++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 456899999999999999999999999 9999999875 6899999999999999999 99999999999999998
Q ss_pred cCCC
Q 016188 306 KQDV 309 (394)
Q Consensus 306 ~~~~ 309 (394)
++..
T Consensus 86 ~~~~ 89 (91)
T 2dgw_A 86 SGPS 89 (91)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 8754
No 207
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.69 E-value=6.1e-17 Score=126.90 Aligned_cols=78 Identities=19% Similarity=0.410 Sum_probs=71.4
Q ss_pred CCccEEEEcCCCCCCCHHHHH----HHhcccCCeEEEEEeC---CCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEE
Q 016188 231 ITNTTIFVGNLDPNVTEEELK----QTFLHFGEIVNVKIPM---GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISW 303 (394)
Q Consensus 231 ~~~~~l~v~nl~~~~t~~~l~----~~F~~~G~i~~~~i~~---~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 303 (394)
.+.++|||+|||+.+++++|+ ++|++||.|.+|.+.. .+|||||+|.+.++|.+|+..|||..|.|+.|+|.|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~ 106 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITF 106 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEE
Confidence 346899999999999999876 6899999999999864 489999999999999999999999999999999999
Q ss_pred cccCC
Q 016188 304 GRKQD 308 (394)
Q Consensus 304 a~~~~ 308 (394)
++.+.
T Consensus 107 a~~~~ 111 (127)
T 2a3j_A 107 SETPQ 111 (127)
T ss_dssp CCCCC
T ss_pred ccCcc
Confidence 98654
No 208
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.69 E-value=4e-16 Score=122.61 Aligned_cols=86 Identities=28% Similarity=0.385 Sum_probs=80.3
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEE
Q 016188 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191 (394)
Q Consensus 112 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v 191 (394)
...+.++|||+|||+++++++|+++| +.||.|..+.++.++ +|+++|||||+|.+.++|++|++.+++..+.|+.|.|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELF-AEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHH-HTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 44567899999999999999999999 899999999999998 8999999999999999999999999999999999999
Q ss_pred eecCCCCC
Q 016188 192 SAATPKKT 199 (394)
Q Consensus 192 ~~a~~~~~ 199 (394)
.++.....
T Consensus 109 ~~a~~~~~ 116 (124)
T 2kt5_A 109 QLVASQID 116 (124)
T ss_dssp EEECCTTC
T ss_pred EEeCCCCC
Confidence 99977654
No 209
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.69 E-value=2.9e-17 Score=130.22 Aligned_cols=82 Identities=13% Similarity=0.086 Sum_probs=72.7
Q ss_pred CCCCCcCCcceEEEcCCCCcCCHHHHHHHHhhcCC---ceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCC
Q 016188 15 HHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGE---VVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMP 91 (394)
Q Consensus 15 ~~~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~---v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~ 91 (394)
......++.++|||+|||+++++++|+++|++||. |.+|+|++++. |+++|||||+|.+.++|++|++ +++..|.
T Consensus 36 ~~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~ 113 (136)
T 2hgl_A 36 MLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMG 113 (136)
T ss_dssp CSCSSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESS
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEEC
Confidence 33445567789999999999999999999999999 89999999985 9999999999999999999998 9999999
Q ss_pred Cccceee
Q 016188 92 GTEQNFR 98 (394)
Q Consensus 92 ~~~~~v~ 98 (394)
++.+.|.
T Consensus 114 gr~i~V~ 120 (136)
T 2hgl_A 114 HRYIEVF 120 (136)
T ss_dssp SSEEEEE
T ss_pred CEEEEEE
Confidence 8654443
No 210
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.5e-16 Score=119.27 Aligned_cols=78 Identities=23% Similarity=0.474 Sum_probs=70.4
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEe--CCCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccC
Q 016188 230 DITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIP--MGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307 (394)
Q Consensus 230 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~--~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 307 (394)
....++|||+|||..+++++|+++|++||.|. +.+. ..+|||||+|.+.++|.+|+..|||..|+|+.|+|++++++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 34468999999999999999999999999995 4444 45899999999999999999999999999999999999876
Q ss_pred C
Q 016188 308 D 308 (394)
Q Consensus 308 ~ 308 (394)
.
T Consensus 95 ~ 95 (97)
T 2e5j_A 95 R 95 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 211
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=5.8e-17 Score=121.54 Aligned_cols=78 Identities=21% Similarity=0.243 Sum_probs=67.4
Q ss_pred CcCCcceEEEcCCCC-cCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCC--CCCccc
Q 016188 19 TLEEVRTLWIGDLQY-WFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTP--MPGTEQ 95 (394)
Q Consensus 19 ~~~~~~~v~V~nLp~-~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~--~~~~~~ 95 (394)
..+++++|||+|||+ +++++||+++|++||.|.+|+|++++ +||||+|.+.++|..|++.|++.. |.+ .
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~G--r 82 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFG--K 82 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETT--E
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECC--c
Confidence 455789999999999 99999999999999999999998764 899999999999999999988755 677 5
Q ss_pred eeeeecccC
Q 016188 96 NFRLNWASF 104 (394)
Q Consensus 96 ~v~~~~~~~ 104 (394)
.+.+.++..
T Consensus 83 ~l~V~~a~~ 91 (102)
T 1x4d_A 83 PVRVHLSQK 91 (102)
T ss_dssp ECEEEEECC
T ss_pred EEEEEECCC
Confidence 556666653
No 212
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.69 E-value=3.1e-17 Score=130.22 Aligned_cols=88 Identities=15% Similarity=0.318 Sum_probs=81.0
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeE--EEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCe----e
Q 016188 110 RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRG--AKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGV----F 183 (394)
Q Consensus 110 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~--v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~----~ 183 (394)
.....+.++|||+|||+++++++|+++| +.||.|.. |+|+.++.+|+++|||||+|.+. +|.+|+..|++. .
T Consensus 17 ~~~~~~~~~lfV~nL~~~~te~~L~~~F-~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~ 94 (131)
T 2m2b_A 17 PSSENANDTIILRNLNPHSTMDSILGAL-APYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT 94 (131)
T ss_dssp CCCSCCCCEEEECSCCTTCCSHHHHHHH-GGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHH-HHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc
Confidence 3445668899999999999999999999 89999976 99999999999999999999999 999999999999 9
Q ss_pred ecCcceEEeecCCCCC
Q 016188 184 CSTRPMRISAATPKKT 199 (394)
Q Consensus 184 ~~g~~l~v~~a~~~~~ 199 (394)
+.|+.|.|.++.+...
T Consensus 95 ~~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 95 IDGKTINVEFAKGSKR 110 (131)
T ss_dssp GGGCCCCCEECCCSCC
T ss_pred CCCEEEEEEECCCCCC
Confidence 9999999999977644
No 213
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.69 E-value=4.9e-17 Score=115.77 Aligned_cols=75 Identities=27% Similarity=0.394 Sum_probs=71.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeec
Q 016188 118 SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (394)
Q Consensus 118 ~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a 194 (394)
+|||+|||+++++++|+++| +.||.|..+.++.++.+++++|||||+|.+.++|++|++ +++..+.|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYF-EQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHH-HTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHH-HhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999 899999999999999899999999999999999999996 9999999999999875
No 214
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2.7e-16 Score=118.88 Aligned_cols=78 Identities=26% Similarity=0.368 Sum_probs=69.5
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeC-----CCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEE
Q 016188 229 NDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM-----GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISW 303 (394)
Q Consensus 229 ~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~-----~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 303 (394)
.....++|||+|||..+++++|+++|++||.| .++. .+|||||+|.+.++|++|+..||+..|.|+.|+|++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 34467999999999999999999999999988 3333 279999999999999999999999999999999999
Q ss_pred cccCCC
Q 016188 304 GRKQDV 309 (394)
Q Consensus 304 a~~~~~ 309 (394)
++++..
T Consensus 88 a~~~~~ 93 (101)
T 2fc9_A 88 QGPRGS 93 (101)
T ss_dssp CSSCCC
T ss_pred cCCCCC
Confidence 988754
No 215
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=2.8e-16 Score=121.90 Aligned_cols=78 Identities=18% Similarity=0.198 Sum_probs=71.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcE-EEEEeCchHHHHHHHHHhCCceeCc--EEEEEEEcccCC
Q 016188 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGC-GFVQFAARASAEEAILRMQGHMIGQ--QQVRISWGRKQD 308 (394)
Q Consensus 232 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~g~-~fV~f~~~~~a~~a~~~l~g~~~~g--~~l~v~~a~~~~ 308 (394)
....|||+||++.+++++|+++|++||.|.+|.|....|| |||+|.+.++|.+|++.|||..|.| +.|+|.+|+++.
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 3456789999999999999999999999999999776796 9999999999999999999999987 699999999775
Q ss_pred C
Q 016188 309 V 309 (394)
Q Consensus 309 ~ 309 (394)
.
T Consensus 104 l 104 (124)
T 2e5i_A 104 L 104 (124)
T ss_dssp C
T ss_pred c
Confidence 4
No 216
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.69 E-value=1.1e-16 Score=126.26 Aligned_cols=89 Identities=20% Similarity=0.336 Sum_probs=82.3
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceE
Q 016188 111 PDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190 (394)
Q Consensus 111 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~ 190 (394)
....+.++|||+|||+++++++|+++| +.||.|..|.++.++.++.++|||||+|.+.++|+.|++.|++..+.|+.|.
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKF-AEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHH-HTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 344567899999999999999999999 8999999999999998999999999999999999999999999999999999
Q ss_pred EeecCCCCCc
Q 016188 191 ISAATPKKTT 200 (394)
Q Consensus 191 v~~a~~~~~~ 200 (394)
|.++.++...
T Consensus 96 v~~a~~~~~~ 105 (126)
T 3ex7_B 96 VDWCFVRGPP 105 (126)
T ss_dssp EEESEESSSC
T ss_pred EEEecCCCCC
Confidence 9999766543
No 217
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.5e-16 Score=118.70 Aligned_cols=88 Identities=25% Similarity=0.339 Sum_probs=80.3
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcce
Q 016188 110 RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189 (394)
Q Consensus 110 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l 189 (394)
+....+.++|||+|||+++++++|+++| +.||.|..|.++.++.+++++|||||+|.+.++|++|++ +++.+.|+.|
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l 85 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYF-STFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWC 85 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHH-GGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEE
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHH-HhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEE
Confidence 4455668899999999999999999999 899999999999999999999999999999999999997 4788999999
Q ss_pred EEeecCCCCCc
Q 016188 190 RISAATPKKTT 200 (394)
Q Consensus 190 ~v~~a~~~~~~ 200 (394)
.|.++.++...
T Consensus 86 ~v~~a~~~~~~ 96 (103)
T 2cqg_A 86 DCKLPNSKQSQ 96 (103)
T ss_dssp EEECCCTTCCC
T ss_pred EEEecCCCCcC
Confidence 99999876543
No 218
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.69 E-value=7.3e-17 Score=118.47 Aligned_cols=82 Identities=26% Similarity=0.443 Sum_probs=71.2
Q ss_pred CCCCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccc
Q 016188 16 HPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQ 95 (394)
Q Consensus 16 ~~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~ 95 (394)
.+....+.++|||+|||+++++++|+++|++||.|.+|+++.++.+++++|||||+|.+.++|.+|++. ++..+.++.+
T Consensus 4 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i 82 (87)
T 3s7r_A 4 ASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVI 82 (87)
T ss_dssp ---CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEE
Confidence 345667889999999999999999999999999999999999988899999999999999999999964 7777888554
Q ss_pred eee
Q 016188 96 NFR 98 (394)
Q Consensus 96 ~v~ 98 (394)
.|+
T Consensus 83 ~v~ 85 (87)
T 3s7r_A 83 DPK 85 (87)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 219
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.3e-17 Score=120.62 Aligned_cols=81 Identities=23% Similarity=0.406 Sum_probs=76.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEee
Q 016188 114 GPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISA 193 (394)
Q Consensus 114 ~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~ 193 (394)
.+.++|||+|||+++++++|+++| +.||.|..+.++.++.+++++|||||+|.+.++|+.|++.||+..+.|+.+++.+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f-~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLC-QPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTS-TTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 457899999999999999999999 8999999999999999999999999999999999999999999999999998876
Q ss_pred cC
Q 016188 194 AT 195 (394)
Q Consensus 194 a~ 195 (394)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 220
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.4e-16 Score=120.37 Aligned_cols=80 Identities=20% Similarity=0.238 Sum_probs=70.6
Q ss_pred CCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCcccee
Q 016188 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNF 97 (394)
Q Consensus 18 ~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v 97 (394)
..+.+.++|||+|||+++++++|+++|++||.+ +|+|+.++ +++++|||||+|.+.++|++|+ .+++..|.++.+.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V 86 (102)
T 1wez_A 10 FQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVEL 86 (102)
T ss_dssp CCCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEE
Confidence 345667899999999999999999999999955 99999998 8999999999999999999999 47999999976555
Q ss_pred eee
Q 016188 98 RLN 100 (394)
Q Consensus 98 ~~~ 100 (394)
...
T Consensus 87 ~~~ 89 (102)
T 1wez_A 87 FLN 89 (102)
T ss_dssp EEE
T ss_pred EEC
Confidence 443
No 221
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.4e-16 Score=122.28 Aligned_cols=79 Identities=19% Similarity=0.365 Sum_probs=72.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhcccCC-eEEEEEe-------CCCcEEEEEeCchHHHHHHHHHhC--CceeCcEEEEE
Q 016188 232 TNTTIFVGNLDPNVTEEELKQTFLHFGE-IVNVKIP-------MGRGCGFVQFAARASAEEAILRMQ--GHMIGQQQVRI 301 (394)
Q Consensus 232 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~-i~~~~i~-------~~~g~~fV~f~~~~~a~~a~~~l~--g~~~~g~~l~v 301 (394)
..++|||+|||..+++++|+++|++||. |.++.++ ..+|||||+|.+.++|.+|+..|| +..++|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4689999999999999999999999998 9999998 357999999999999999999996 58999999999
Q ss_pred EEcccCCCC
Q 016188 302 SWGRKQDVT 310 (394)
Q Consensus 302 ~~a~~~~~~ 310 (394)
.+++++...
T Consensus 87 ~~a~~~~~~ 95 (109)
T 2dis_A 87 DWAEPEIDV 95 (109)
T ss_dssp EESCSSCST
T ss_pred EEcCCCCCc
Confidence 999976543
No 222
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.69 E-value=1.3e-16 Score=117.58 Aligned_cols=74 Identities=24% Similarity=0.487 Sum_probs=69.9
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEccc
Q 016188 233 NTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRK 306 (394)
Q Consensus 233 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 306 (394)
.++|||+|||..+++++|+++|++||.|.++.+..+ +|+|||+|.+.++|.+|+ .||+..|+|+.|+|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 489999999999999999999999999999999865 689999999999999999 9999999999999999986
Q ss_pred C
Q 016188 307 Q 307 (394)
Q Consensus 307 ~ 307 (394)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 223
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.68 E-value=1.6e-16 Score=127.74 Aligned_cols=84 Identities=23% Similarity=0.343 Sum_probs=75.5
Q ss_pred CCCCCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCcc
Q 016188 15 HHPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTE 94 (394)
Q Consensus 15 ~~~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~ 94 (394)
.......+.++|||+|||.++++++|+++|++||.|.+|++++++.+++++|||||+|.+.++|.+|++.|++..+.++.
T Consensus 55 ~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 134 (140)
T 2ku7_A 55 GSGGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT 134 (140)
T ss_dssp SSCSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEE
T ss_pred CCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 34456667899999999999999999999999999999999999888999999999999999999999999999999855
Q ss_pred ceee
Q 016188 95 QNFR 98 (394)
Q Consensus 95 ~~v~ 98 (394)
+.|.
T Consensus 135 l~v~ 138 (140)
T 2ku7_A 135 IRVN 138 (140)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 224
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.4e-17 Score=119.69 Aligned_cols=77 Identities=27% Similarity=0.361 Sum_probs=71.4
Q ss_pred cCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccce
Q 016188 20 LEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQN 96 (394)
Q Consensus 20 ~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~ 96 (394)
.++.++|||+|||+++++++|+++|++||.|.+|.++.++.+++++|||||+|.+.++|.+|++.|++..+.++.++
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 78 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAK 78 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEe
Confidence 35678999999999999999999999999999999999988899999999999999999999999999999885443
No 225
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.68 E-value=2.3e-16 Score=129.30 Aligned_cols=87 Identities=21% Similarity=0.265 Sum_probs=81.6
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEE
Q 016188 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191 (394)
Q Consensus 112 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v 191 (394)
...+.++|||+|||+++++++|+++| +.||.|..|.|+.++.+++++|||||+|.+.++|++|++.|++..+.|+.|.|
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELF-SKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34567899999999999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCC
Q 016188 192 SAATPKKT 199 (394)
Q Consensus 192 ~~a~~~~~ 199 (394)
.++.+...
T Consensus 114 ~~a~~~~~ 121 (156)
T 1h2v_Z 114 DWDAGFKE 121 (156)
T ss_dssp EEESCCCT
T ss_pred EECCCCCC
Confidence 99987554
No 226
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.1e-16 Score=124.39 Aligned_cols=85 Identities=25% Similarity=0.419 Sum_probs=79.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEee
Q 016188 114 GPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISA 193 (394)
Q Consensus 114 ~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~ 193 (394)
...++|||+|||+++++++|+++| +.||.|..|.++.++.+++++|||||+|.+.++|++|++. ++..+.|+.|.|.+
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYY-EQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHH-TSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 346899999999999999999999 8999999999999999999999999999999999999977 99999999999999
Q ss_pred cCCCCCc
Q 016188 194 ATPKKTT 200 (394)
Q Consensus 194 a~~~~~~ 200 (394)
+.++...
T Consensus 103 a~~~~~~ 109 (116)
T 1x4b_A 103 AVAREES 109 (116)
T ss_dssp CSSCCCC
T ss_pred CCCCccC
Confidence 9877553
No 227
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.68 E-value=1.1e-16 Score=117.77 Aligned_cols=76 Identities=13% Similarity=0.215 Sum_probs=71.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccCC
Q 016188 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308 (394)
Q Consensus 232 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 308 (394)
..++|||+|||..+++++|+++|++| .|.++.+...+|+|||+|.+.++|.+|++.|||..++|++|+|+++....
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 45889999999999999999999999 99999998889999999999999999999999999999999999987543
No 228
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=4.1e-16 Score=118.34 Aligned_cols=85 Identities=20% Similarity=0.340 Sum_probs=73.3
Q ss_pred CCCCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccc
Q 016188 16 HPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQ 95 (394)
Q Consensus 16 ~~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~ 95 (394)
......+.++|||+|||+++++++|+++|.+||.|.+|+++.++.+++++|||||+|.+.++|.+|++ ++..+.++
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~-- 83 (103)
T 2cqg_A 8 VKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGR-- 83 (103)
T ss_dssp CSCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTE--
T ss_pred CCCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCe--
Confidence 34456677899999999999999999999999999999999998889999999999999999999997 46677774
Q ss_pred eeeeecccC
Q 016188 96 NFRLNWASF 104 (394)
Q Consensus 96 ~v~~~~~~~ 104 (394)
.+.+.++..
T Consensus 84 ~l~v~~a~~ 92 (103)
T 2cqg_A 84 WCDCKLPNS 92 (103)
T ss_dssp EEEEECCCT
T ss_pred EEEEEecCC
Confidence 455555543
No 229
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.68 E-value=1.3e-16 Score=126.70 Aligned_cols=84 Identities=18% Similarity=0.316 Sum_probs=74.5
Q ss_pred CCCCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceE--EEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCC----C
Q 016188 16 HPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVS--IKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGT----P 89 (394)
Q Consensus 16 ~~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~--v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~----~ 89 (394)
.+......++|||+|||+++++++|+++|++||.|.. |+|++++.+|+++|||||+|.+. +|.+|++.|++. .
T Consensus 16 ~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~ 94 (131)
T 2m2b_A 16 EPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT 94 (131)
T ss_dssp CCCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc
Confidence 3445567789999999999999999999999999976 99999998999999999999999 999999999999 8
Q ss_pred CCCccceeeee
Q 016188 90 MPGTEQNFRLN 100 (394)
Q Consensus 90 ~~~~~~~v~~~ 100 (394)
+.++.+.|...
T Consensus 95 ~~gr~l~V~~a 105 (131)
T 2m2b_A 95 IDGKTINVEFA 105 (131)
T ss_dssp GGGCCCCCEEC
T ss_pred CCCEEEEEEEC
Confidence 88866555443
No 230
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.68 E-value=1.2e-16 Score=119.89 Aligned_cols=79 Identities=32% Similarity=0.550 Sum_probs=73.1
Q ss_pred CCccEEEEcCCCCCCCHHHHH----HHhcccCCeEEEEEeC---CCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEE
Q 016188 231 ITNTTIFVGNLDPNVTEEELK----QTFLHFGEIVNVKIPM---GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISW 303 (394)
Q Consensus 231 ~~~~~l~v~nl~~~~t~~~l~----~~F~~~G~i~~~~i~~---~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 303 (394)
.+.++|||+|||..+++++|+ ++|++||.|.++.+.. .+|+|||+|.+.++|.+|+..|||..++|+.|+|++
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY 85 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 356899999999999999999 9999999999999984 479999999999999999999999999999999999
Q ss_pred cccCCC
Q 016188 304 GRKQDV 309 (394)
Q Consensus 304 a~~~~~ 309 (394)
++++..
T Consensus 86 a~~~~~ 91 (97)
T 1nu4_A 86 AKTDSD 91 (97)
T ss_dssp CSSCCT
T ss_pred ccCCCc
Confidence 987643
No 231
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.68 E-value=5.1e-17 Score=121.45 Aligned_cols=82 Identities=18% Similarity=0.259 Sum_probs=76.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEee
Q 016188 114 GPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISA 193 (394)
Q Consensus 114 ~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~ 193 (394)
.+.++|||+|||+++++++|+++| +.||.|..+.++.++.+++++|||||+|.+.++|++|++.|++..+.|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFF-YGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHT-TTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-HhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 346899999999999999999999 8999999999999988999999999999999999999999999999999999998
Q ss_pred cCC
Q 016188 194 ATP 196 (394)
Q Consensus 194 a~~ 196 (394)
+.+
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 753
No 232
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.68 E-value=1.3e-16 Score=113.81 Aligned_cols=73 Identities=12% Similarity=0.196 Sum_probs=69.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeecC
Q 016188 116 EHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAAT 195 (394)
Q Consensus 116 ~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a~ 195 (394)
+..|+|+||++.+|+++|+++| ++||+|.++++.. ++|||||+|.+.++|.+|++.||+..+.|++|.|.++.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF-~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLC-MQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHH-HHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHH-HhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 6789999999999999999999 8999999999865 68999999999999999999999999999999999984
No 233
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.2e-16 Score=119.03 Aligned_cols=81 Identities=15% Similarity=0.196 Sum_probs=71.3
Q ss_pred CCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceE-EEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccce
Q 016188 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVS-IKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQN 96 (394)
Q Consensus 18 ~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~-v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~ 96 (394)
....+.++|||+|||+++++++|+++|.+||.|.+ |.|+.+ .+|+++|||||+|.+.++|.+|++. ++..+.++.+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~ 87 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIE 87 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEE
Confidence 34466789999999999999999999999999987 888888 5899999999999999999999987 99999997655
Q ss_pred eeee
Q 016188 97 FRLN 100 (394)
Q Consensus 97 v~~~ 100 (394)
|...
T Consensus 88 v~~~ 91 (104)
T 1wg5_A 88 IFKS 91 (104)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 5443
No 234
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.2e-16 Score=121.14 Aligned_cols=87 Identities=13% Similarity=0.226 Sum_probs=79.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhhCCC-eeEEEEe-eCCCCCCCccEEEEEeCCHHHHHHHHHhhC--CeeecCcc
Q 016188 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPS-VRGAKVV-TDPNTGRSKGYGFVKFLDENERNRAMTEMN--GVFCSTRP 188 (394)
Q Consensus 113 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~-v~~v~i~-~~~~tg~~~g~afV~f~~~e~a~~ai~~l~--~~~~~g~~ 188 (394)
+.+.++|||+|||+++++++|+++| +.||. |..+.++ .++.+|+++|||||+|.+.++|..|++.|+ +..+.|+.
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f-~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~ 83 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEI-AKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ 83 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHH-HHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHH-HHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCe
Confidence 3457899999999999999999999 89998 9999998 788889999999999999999999999996 58999999
Q ss_pred eEEeecCCCCCc
Q 016188 189 MRISAATPKKTT 200 (394)
Q Consensus 189 l~v~~a~~~~~~ 200 (394)
|.|.++.++...
T Consensus 84 l~V~~a~~~~~~ 95 (109)
T 2dis_A 84 IAVDWAEPEIDV 95 (109)
T ss_dssp CEEEESCSSCST
T ss_pred EEEEEcCCCCCc
Confidence 999999876543
No 235
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.1e-16 Score=117.23 Aligned_cols=81 Identities=15% Similarity=0.191 Sum_probs=75.2
Q ss_pred CCcceEEEcCCCCCCCHHHHH----HHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcce
Q 016188 114 GPEHSIFVGDLAPDVTDYLLQ----ETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189 (394)
Q Consensus 114 ~~~~~l~v~nlp~~~t~~~l~----~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l 189 (394)
...++|||+|||+++++++|+ ++| +.||.|.+|.++.++.+ +|||||+|.+.++|++|++.||+..+.|+.|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F-~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAF-ARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHH-HHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhc-cccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 346799999999999999999 999 89999999999998765 8899999999999999999999999999999
Q ss_pred EEeecCCCC
Q 016188 190 RISAATPKK 198 (394)
Q Consensus 190 ~v~~a~~~~ 198 (394)
.|.++.+..
T Consensus 83 ~V~~a~~~~ 91 (96)
T 2dgx_A 83 LVSLATGAS 91 (96)
T ss_dssp EEEECCCSS
T ss_pred EEEEcCCCC
Confidence 999997654
No 236
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.68 E-value=1.7e-16 Score=121.36 Aligned_cols=82 Identities=23% Similarity=0.411 Sum_probs=74.2
Q ss_pred CCCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccce
Q 016188 17 PMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQN 96 (394)
Q Consensus 17 ~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~ 96 (394)
+...++.++|||+|||+.+++++|+++|++||.|.+|+++.+. ++++++||||+|.+.++|.+|++.|++..+.++.+.
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 3455678999999999999999999999999999999999998 999999999999999999999999999999986655
Q ss_pred eee
Q 016188 97 FRL 99 (394)
Q Consensus 97 v~~ 99 (394)
|.+
T Consensus 102 V~~ 104 (107)
T 3ulh_A 102 IQL 104 (107)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 237
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.68 E-value=5.1e-16 Score=124.86 Aligned_cols=84 Identities=25% Similarity=0.432 Sum_probs=78.2
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcce
Q 016188 110 RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189 (394)
Q Consensus 110 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l 189 (394)
.....+.++|||+|||+++++++|+++| +.||.|..+.++.++.+++++|||||+|.+.++|++|++.|++..+.|+.|
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 135 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAF-IPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 135 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHH-GGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEE
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHH-HhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 3445668899999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred EEeec
Q 016188 190 RISAA 194 (394)
Q Consensus 190 ~v~~a 194 (394)
.|.+|
T Consensus 136 ~v~~A 140 (140)
T 2ku7_A 136 RVNLA 140 (140)
T ss_dssp EEEC-
T ss_pred EEEeC
Confidence 99875
No 238
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.68 E-value=1.9e-16 Score=117.41 Aligned_cols=81 Identities=16% Similarity=0.167 Sum_probs=72.4
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCee--ecCcc
Q 016188 111 PDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVF--CSTRP 188 (394)
Q Consensus 111 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~--~~g~~ 188 (394)
....++++|||+|||+++++++|+++| ++||.|.++.+++ .||+|||+|.+.++|..|++.+++.. +.|+.
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF-~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~ 88 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEAL-QEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHP 88 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHH-GGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHH-hccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcE
Confidence 445678999999999999999999999 8999999999875 47899999999999999999998765 78999
Q ss_pred eEEeecCCCC
Q 016188 189 MRISAATPKK 198 (394)
Q Consensus 189 l~v~~a~~~~ 198 (394)
|.|.++..+.
T Consensus 89 i~V~~S~~k~ 98 (100)
T 3r27_A 89 AFVNYSTSQK 98 (100)
T ss_dssp EEEEECSCSC
T ss_pred EEEEeccccc
Confidence 9999997653
No 239
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.4e-16 Score=118.25 Aligned_cols=81 Identities=19% Similarity=0.245 Sum_probs=68.2
Q ss_pred CCCCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcC--CCCCCCc
Q 016188 16 HPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYN--GTPMPGT 93 (394)
Q Consensus 16 ~~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~--~~~~~~~ 93 (394)
+.....+.++|||+|||+++++++|+++|++||.|.+|+++++ +|||||+|.+.++|..|++.|+ +..+.+
T Consensus 8 ~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G- 80 (101)
T 2cq1_A 8 DKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRN- 80 (101)
T ss_dssp CCCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETT-
T ss_pred CCccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECC-
Confidence 3456677899999999999999999999999999999998875 5999999999999999999775 455777
Q ss_pred cceeeeecccC
Q 016188 94 EQNFRLNWASF 104 (394)
Q Consensus 94 ~~~v~~~~~~~ 104 (394)
..+.+.++..
T Consensus 81 -r~l~V~~a~~ 90 (101)
T 2cq1_A 81 -QPIYIQYSNH 90 (101)
T ss_dssp -EECEEEECSC
T ss_pred -cEEEEEEcCc
Confidence 4555666543
No 240
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.68 E-value=1.5e-16 Score=121.83 Aligned_cols=84 Identities=23% Similarity=0.378 Sum_probs=69.2
Q ss_pred CCCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccce
Q 016188 17 PMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQN 96 (394)
Q Consensus 17 ~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~ 96 (394)
..+.++.++|||+|||+++++++|+++|++||.|.+|++++++.+|+++|||||+|.+.++|.+|++.+ +..+.++.
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~-- 95 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKT-- 95 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEE--
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEE--
Confidence 346677899999999999999999999999999999999999888999999999999999999999876 57888855
Q ss_pred eeeeccc
Q 016188 97 FRLNWAS 103 (394)
Q Consensus 97 v~~~~~~ 103 (394)
+.+.++.
T Consensus 96 l~V~~a~ 102 (109)
T 2rs2_A 96 IDPKVAF 102 (109)
T ss_dssp EEEEECC
T ss_pred EEEEEcc
Confidence 4444443
No 241
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.68 E-value=3.8e-16 Score=121.62 Aligned_cols=80 Identities=26% Similarity=0.336 Sum_probs=72.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-CcE-EEEEeCchHHHHHHHHHhCCceeCc--EEEEEEEccc
Q 016188 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG-RGC-GFVQFAARASAEEAILRMQGHMIGQ--QQVRISWGRK 306 (394)
Q Consensus 231 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~-~g~-~fV~f~~~~~a~~a~~~l~g~~~~g--~~l~v~~a~~ 306 (394)
.....|||+||++.+|+++|+++|++||.|.+|.|..+ +++ |||+|.+.++|.+|++.|||..|.| +.|+|+|+++
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 34577889999999999999999999999999998754 677 9999999999999999999999987 9999999998
Q ss_pred CCCC
Q 016188 307 QDVT 310 (394)
Q Consensus 307 ~~~~ 310 (394)
....
T Consensus 106 ~~l~ 109 (130)
T 3zzy_A 106 TSLN 109 (130)
T ss_dssp SSCC
T ss_pred Ccee
Confidence 7543
No 242
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=7.6e-17 Score=115.43 Aligned_cols=76 Identities=29% Similarity=0.508 Sum_probs=72.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeec
Q 016188 117 HSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (394)
Q Consensus 117 ~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a 194 (394)
++|||+|||+++++++|+++| +.||.|..+.++.++.+++++|+|||+|.+.++|++|++.++ ..+.|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F-~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYF-GQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHH-TTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999 899999999999999899999999999999999999999999 8999999999886
No 243
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.3e-16 Score=122.49 Aligned_cols=79 Identities=24% Similarity=0.427 Sum_probs=72.8
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEc
Q 016188 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWG 304 (394)
Q Consensus 231 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 304 (394)
...++|||+|||..+++++|+++|++||.|.+|.|+.+ +|||||+|.+.++|.+|+.. ++..|+|+.|+|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 34589999999999999999999999999999999875 58999999999999999988 999999999999999
Q ss_pred ccCCCC
Q 016188 305 RKQDVT 310 (394)
Q Consensus 305 ~~~~~~ 310 (394)
+++...
T Consensus 104 ~~~~~~ 109 (116)
T 1x4b_A 104 VAREES 109 (116)
T ss_dssp SSCCCC
T ss_pred CCCccC
Confidence 887643
No 244
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=4.9e-16 Score=118.91 Aligned_cols=80 Identities=18% Similarity=0.206 Sum_probs=69.0
Q ss_pred CCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCcc---
Q 016188 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTE--- 94 (394)
Q Consensus 18 ~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~--- 94 (394)
......++|||+|||+++++++|+++|.+||.|.+|+|+.+ +||||+|.+.++|++|++.||+..|.+..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~ 82 (108)
T 1x4c_A 10 PSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGET 82 (108)
T ss_dssp CCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcc
Confidence 33466789999999999999999999999999999999876 89999999999999999999999998822
Q ss_pred ceeeeecccC
Q 016188 95 QNFRLNWASF 104 (394)
Q Consensus 95 ~~v~~~~~~~ 104 (394)
..+.+.++..
T Consensus 83 ~~i~V~~a~~ 92 (108)
T 1x4c_A 83 AYIRVKVDGP 92 (108)
T ss_dssp EEEEEEESSC
T ss_pred eEEEEEeCCC
Confidence 4455555544
No 245
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.67 E-value=2.1e-16 Score=120.21 Aligned_cols=77 Identities=23% Similarity=0.334 Sum_probs=70.8
Q ss_pred CCccEEEEcCCCCCC------CHHHHHHHhcccCCeEEEEEeC----CCcEEEEEeCchHHHHHHHHHhCCceeCcE-EE
Q 016188 231 ITNTTIFVGNLDPNV------TEEELKQTFLHFGEIVNVKIPM----GRGCGFVQFAARASAEEAILRMQGHMIGQQ-QV 299 (394)
Q Consensus 231 ~~~~~l~v~nl~~~~------t~~~l~~~F~~~G~i~~~~i~~----~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~-~l 299 (394)
...++|||+|||..+ ++++|+++|++||.|.++.|++ .+|||||+|.+.++|.+|+..|||..|+|+ .|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 346899999999999 7899999999999999999984 379999999999999999999999999998 99
Q ss_pred EEEEcccC
Q 016188 300 RISWGRKQ 307 (394)
Q Consensus 300 ~v~~a~~~ 307 (394)
+|.++...
T Consensus 93 ~V~~a~~~ 100 (105)
T 2nlw_A 93 RVNLFTDF 100 (105)
T ss_dssp EEECSCCC
T ss_pred EEEEcchH
Confidence 99998754
No 246
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=7.6e-16 Score=119.14 Aligned_cols=87 Identities=23% Similarity=0.428 Sum_probs=75.4
Q ss_pred CCCCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCcc-
Q 016188 16 HPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTE- 94 (394)
Q Consensus 16 ~~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~- 94 (394)
......+.++|||+|||+++++++|+++|++||.|.+|+++.+. +++++|||||+|.+.++|.+|++.|++..+.+..
T Consensus 18 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~ 96 (114)
T 1x5o_A 18 AKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPG 96 (114)
T ss_dssp CSCCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTT
T ss_pred hcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcc
Confidence 33455677899999999999999999999999999999999998 8999999999999999999999999999996432
Q ss_pred -----ceeeeeccc
Q 016188 95 -----QNFRLNWAS 103 (394)
Q Consensus 95 -----~~v~~~~~~ 103 (394)
..+.+.++.
T Consensus 97 ~~~~~~~l~v~~a~ 110 (114)
T 1x5o_A 97 VSAPTEPLLCKFSG 110 (114)
T ss_dssp SCCCSSCBEEEECC
T ss_pred ccCCCCceeEEccC
Confidence 345555554
No 247
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.4e-16 Score=123.35 Aligned_cols=82 Identities=26% Similarity=0.409 Sum_probs=77.5
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeec
Q 016188 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (394)
Q Consensus 115 ~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a 194 (394)
..++|||+|||+++++++|+++| +.||.|..|.++.++.+++++|||||+|.+.++|++|+ .|++..+.|+.|.|.++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFF-SAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHH-TTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHH-HhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 45799999999999999999999 89999999999999999999999999999999999999 99999999999999998
Q ss_pred CCCC
Q 016188 195 TPKK 198 (394)
Q Consensus 195 ~~~~ 198 (394)
.++.
T Consensus 102 ~~~~ 105 (114)
T 2cq4_A 102 QAEK 105 (114)
T ss_dssp HHHH
T ss_pred CCCc
Confidence 6543
No 248
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2.5e-16 Score=121.17 Aligned_cols=86 Identities=17% Similarity=0.290 Sum_probs=78.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHH---HHHHhhCCCeeEEEEeeCCCCC---CCccEEEEEeCCHHHHHHHHHhhCCeeecC
Q 016188 113 AGPEHSIFVGDLAPDVTDYLLQ---ETFRSQYPSVRGAKVVTDPNTG---RSKGYGFVKFLDENERNRAMTEMNGVFCST 186 (394)
Q Consensus 113 ~~~~~~l~v~nlp~~~t~~~l~---~~f~~~~G~v~~v~i~~~~~tg---~~~g~afV~f~~~e~a~~ai~~l~~~~~~g 186 (394)
....++|||+|||+++++++|+ ++| +.||.|..+.++.++.++ +++|||||+|.+.++|++|++.||+..+.|
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F-~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYF-GKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTT-TTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHh-hccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 3457899999999999999999 999 899999999999987654 566999999999999999999999999999
Q ss_pred cceEEeecCCCCC
Q 016188 187 RPMRISAATPKKT 199 (394)
Q Consensus 187 ~~l~v~~a~~~~~ 199 (394)
+.|.|.++.++..
T Consensus 91 r~l~V~~a~~k~~ 103 (111)
T 2cpi_A 91 RTLKASLGTTKYC 103 (111)
T ss_dssp EEEEEESCCCCSC
T ss_pred EEEEEEecccccc
Confidence 9999999987753
No 249
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.67 E-value=1.9e-16 Score=124.57 Aligned_cols=77 Identities=23% Similarity=0.459 Sum_probs=71.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcc
Q 016188 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (394)
Q Consensus 232 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 305 (394)
..++|||+|||..+++++|+++|++||.|.++.+..+ +|||||+|.+.++|.+|+ .|||..|+|+.|+|++++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3589999999999999999999999999999999764 689999999999999999 899999999999999998
Q ss_pred cCCC
Q 016188 306 KQDV 309 (394)
Q Consensus 306 ~~~~ 309 (394)
....
T Consensus 114 ~~~~ 117 (124)
T 2jwn_A 114 TNMP 117 (124)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6543
No 250
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.6e-16 Score=120.58 Aligned_cols=87 Identities=21% Similarity=0.427 Sum_probs=78.7
Q ss_pred CCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCc
Q 016188 108 EKRPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTR 187 (394)
Q Consensus 108 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~ 187 (394)
.........++|||+|||.++++++|+++| +.||.|..+.++.++ +.++|||||+|.+.++|++|++.|++..+.|+
T Consensus 21 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F-~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 97 (109)
T 2err_A 21 MNTENKSQPKRLHVSNIPFRFRDPDLRQMF-GQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGR 97 (109)
T ss_dssp -CCSCTTCCCEEEEESCCTTCCHHHHHHHG-GGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTE
T ss_pred CCccCCCCCCEEEEECCCCcCCHHHHHHHH-HhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 344555678999999999999999999999 899999999999885 45899999999999999999999999999999
Q ss_pred ceEEeecCCC
Q 016188 188 PMRISAATPK 197 (394)
Q Consensus 188 ~l~v~~a~~~ 197 (394)
.|.|.++.++
T Consensus 98 ~l~V~~a~~~ 107 (109)
T 2err_A 98 KIEVNNATAR 107 (109)
T ss_dssp ECEEEECCCS
T ss_pred EEEEEECCCC
Confidence 9999998765
No 251
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.67 E-value=6.9e-16 Score=121.24 Aligned_cols=81 Identities=21% Similarity=0.393 Sum_probs=73.6
Q ss_pred CcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceee
Q 016188 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (394)
Q Consensus 19 ~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~ 98 (394)
..++.++|||+|||+++++++|+++|++||.|.+|++..+. +|+++|||||+|.+.++|.+|++.|++..+.++.+.|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 55677899999999999999999999999999999999998 99999999999999999999999999999998554444
Q ss_pred ee
Q 016188 99 LN 100 (394)
Q Consensus 99 ~~ 100 (394)
..
T Consensus 110 ~a 111 (124)
T 2kt5_A 110 LV 111 (124)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 252
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.67 E-value=1.7e-16 Score=129.35 Aligned_cols=78 Identities=23% Similarity=0.509 Sum_probs=71.3
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHhhcC--CceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeee
Q 016188 22 EVRTLWIGDLQYWFDENYLSSCFAHTG--EVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRL 99 (394)
Q Consensus 22 ~~~~v~V~nLp~~~~e~~l~~~f~~~G--~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~ 99 (394)
+.++|||+|||+++++++|+++|++|| .|.+|+|+.++.+|+++|||||+|.+.++|.+|++.|++..|.|+.+.|..
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 899999999998999999999999999999999999999999996555543
No 253
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.6e-16 Score=118.73 Aligned_cols=84 Identities=19% Similarity=0.237 Sum_probs=76.3
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeE-EEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceE
Q 016188 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRG-AKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190 (394)
Q Consensus 112 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~-v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~ 190 (394)
......+|||+|||+++++++|+++| +.||.|.. +.|+.+ .+|+++|||||+|.+.++|++|++. ++..+.++.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F-~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~ 87 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFF-SGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIE 87 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHT-TTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEE
Confidence 34557899999999999999999999 89999987 888888 7899999999999999999999976 99999999999
Q ss_pred EeecCCCC
Q 016188 191 ISAATPKK 198 (394)
Q Consensus 191 v~~a~~~~ 198 (394)
|.++..+.
T Consensus 88 v~~~~~~~ 95 (104)
T 1wg5_A 88 IFKSSRAE 95 (104)
T ss_dssp EEEECTTT
T ss_pred EEECCHHH
Confidence 99987654
No 254
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.5e-16 Score=123.19 Aligned_cols=80 Identities=19% Similarity=0.331 Sum_probs=72.8
Q ss_pred CcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceee
Q 016188 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (394)
Q Consensus 19 ~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~ 98 (394)
...+.++|||+|||.++++++|+++|++||.|.+|+++.++.+++++|||||+|.+.++|.+|+ .|++..|.++.+.|.
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 99 (114)
T 2cq4_A 21 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQ 99 (114)
T ss_dssp THHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEE
Confidence 4456689999999999999999999999999999999999988999999999999999999999 999999999655544
Q ss_pred e
Q 016188 99 L 99 (394)
Q Consensus 99 ~ 99 (394)
.
T Consensus 100 ~ 100 (114)
T 2cq4_A 100 A 100 (114)
T ss_dssp E
T ss_pred e
Confidence 4
No 255
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5.5e-16 Score=119.94 Aligned_cols=85 Identities=18% Similarity=0.429 Sum_probs=77.9
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeee------
Q 016188 111 PDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFC------ 184 (394)
Q Consensus 111 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~------ 184 (394)
....+.++|||+|||+++++++|+++| +.||.|..+.++.++ +++++|||||+|.+.++|+.|++.||+..+
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~ 97 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENML-KPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGV 97 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTT-TTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTS
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccc
Confidence 344567899999999999999999999 899999999999998 899999999999999999999999999998
Q ss_pred --cCcceEEeecCCC
Q 016188 185 --STRPMRISAATPK 197 (394)
Q Consensus 185 --~g~~l~v~~a~~~ 197 (394)
.++.|.|.++.++
T Consensus 98 ~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 98 SAPTEPLLCKFSGPS 112 (114)
T ss_dssp CCCSSCBEEEECCCS
T ss_pred cCCCCceeEEccCCC
Confidence 5778999988754
No 256
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=8.5e-16 Score=115.17 Aligned_cols=83 Identities=19% Similarity=0.394 Sum_probs=70.4
Q ss_pred CCCCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccc
Q 016188 16 HPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQ 95 (394)
Q Consensus 16 ~~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~ 95 (394)
......+.++|||+|||+++++++|+++|++||.|.+|++.++ ++||||+|.+.++|++|++.|++..+.+...
T Consensus 10 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~ 83 (97)
T 1why_A 10 GYGKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDR 83 (97)
T ss_dssp CCCCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSC
T ss_pred cCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCc
Confidence 3445567799999999999999999999999999999998765 5899999999999999999999999983235
Q ss_pred eeeeecccC
Q 016188 96 NFRLNWASF 104 (394)
Q Consensus 96 ~v~~~~~~~ 104 (394)
.+.+.++..
T Consensus 84 ~l~V~~a~~ 92 (97)
T 1why_A 84 RLRVDFAKS 92 (97)
T ss_dssp BCEEEECCC
T ss_pred EEEEEECCC
Confidence 566666543
No 257
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.67 E-value=1.4e-16 Score=113.40 Aligned_cols=73 Identities=21% Similarity=0.345 Sum_probs=67.8
Q ss_pred eEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceee
Q 016188 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (394)
Q Consensus 25 ~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~ 98 (394)
+|||+|||+++++++|+++|++||.|.+|.++.++.+++++|||||+|.+.++|++|++ +++..+.++.+.+.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~ 73 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECK 73 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEE
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEE
Confidence 59999999999999999999999999999999998889999999999999999999997 89999999665543
No 258
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.66 E-value=1.7e-16 Score=122.85 Aligned_cols=75 Identities=16% Similarity=0.355 Sum_probs=67.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCceeCcEE-----EEEEEccc
Q 016188 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQ-----VRISWGRK 306 (394)
Q Consensus 232 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~-----l~v~~a~~ 306 (394)
..++|||+|||..+++++|+++|++||.|.++.|+.+ |||||+|.+.++|++||+.||+..|+|+. |+|..+.+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~ 93 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 93 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC-
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCC
Confidence 4589999999999999999999999999999999988 99999999999999999999999999998 77776665
Q ss_pred C
Q 016188 307 Q 307 (394)
Q Consensus 307 ~ 307 (394)
+
T Consensus 94 ~ 94 (115)
T 3beg_B 94 R 94 (115)
T ss_dssp -
T ss_pred C
Confidence 3
No 259
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.66 E-value=4.1e-16 Score=126.07 Aligned_cols=79 Identities=27% Similarity=0.319 Sum_probs=71.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC--CcEEEEEeCchHHHHHHHHHhCCceeCc--EEEEEEEccc
Q 016188 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG--RGCGFVQFAARASAEEAILRMQGHMIGQ--QQVRISWGRK 306 (394)
Q Consensus 231 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~--~g~~fV~f~~~~~a~~a~~~l~g~~~~g--~~l~v~~a~~ 306 (394)
....+|||+||++.+|+++|+++|++||.|.+|.|..+ ++||||+|.+.++|++|++.|||..|.| +.|+|+|+++
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~ 123 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 123 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSS
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecC
Confidence 34578999999999999999999999999999999743 6799999999999999999999999965 9999999998
Q ss_pred CCC
Q 016188 307 QDV 309 (394)
Q Consensus 307 ~~~ 309 (394)
+..
T Consensus 124 ~~l 126 (164)
T 1sjr_A 124 TSL 126 (164)
T ss_dssp SSC
T ss_pred Ccc
Confidence 753
No 260
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3e-16 Score=119.50 Aligned_cols=80 Identities=23% Similarity=0.351 Sum_probs=73.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEee
Q 016188 114 GPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISA 193 (394)
Q Consensus 114 ~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~ 193 (394)
....+|||+|||+++++++|+++| +.| .|.+|.|+.++. |+++|||||+|.+.++|++|+ .+++..+.||.|.|..
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F-~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 89 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFF-HGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSP 89 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHT-TTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHh-ccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEE
Confidence 345789999999999999999999 899 899999999976 999999999999999999999 7999999999999988
Q ss_pred cCCC
Q 016188 194 ATPK 197 (394)
Q Consensus 194 a~~~ 197 (394)
+..+
T Consensus 90 a~~~ 93 (109)
T 2dnn_A 90 ATER 93 (109)
T ss_dssp CCHH
T ss_pred CCcc
Confidence 8543
No 261
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5e-16 Score=119.47 Aligned_cols=84 Identities=18% Similarity=0.212 Sum_probs=74.6
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCC--eeecCc
Q 016188 110 RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNG--VFCSTR 187 (394)
Q Consensus 110 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~--~~~~g~ 187 (394)
.....++++|||+|||+++++++|+++| +.||.|.+|.++.+ +|||||+|.+.++|..|++.+++ ..+.|+
T Consensus 25 ~~~~~ps~~LfVgNLp~~vte~dL~~lF-~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr 97 (119)
T 2ad9_A 25 RSAGVPSRVIHIRKLPIDVTEGEVISLG-LPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQ 97 (119)
T ss_dssp TSCSSCCSEEEEESCCTTCCHHHHHHHH-TTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTB
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCe
Confidence 3345668899999999999999999999 89999999999875 78999999999999999998874 679999
Q ss_pred ceEEeecCCCCCc
Q 016188 188 PMRISAATPKKTT 200 (394)
Q Consensus 188 ~l~v~~a~~~~~~ 200 (394)
.|.|.++.++...
T Consensus 98 ~l~V~~a~~k~~~ 110 (119)
T 2ad9_A 98 PIYIQFSNHKELK 110 (119)
T ss_dssp CCEEEECSSSSCC
T ss_pred EEEEEEccCCCCC
Confidence 9999999776544
No 262
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.3e-16 Score=121.08 Aligned_cols=84 Identities=13% Similarity=0.194 Sum_probs=77.3
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCe-eEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceE
Q 016188 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSV-RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190 (394)
Q Consensus 112 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v-~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~ 190 (394)
...+.++|||+|||+++++++|+++| +.||.| ..|.|+.++ +|+++|||||+|.+.++|++|++. ++..+.|+.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F-~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~ 87 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFL-EGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAF 87 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHT-TTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHH-HhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEE
Confidence 34557899999999999999999999 899999 899999998 899999999999999999999976 99999999999
Q ss_pred EeecCCCC
Q 016188 191 ISAATPKK 198 (394)
Q Consensus 191 v~~a~~~~ 198 (394)
|.++.++.
T Consensus 88 v~~a~~~~ 95 (114)
T 2cpy_A 88 VHVVTLED 95 (114)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99987654
No 263
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.3e-16 Score=120.74 Aligned_cols=81 Identities=25% Similarity=0.435 Sum_probs=72.5
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhcccCCe----EEEEEeC--CCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEE
Q 016188 230 DITNTTIFVGNLDPNVTEEELKQTFLHFGEI----VNVKIPM--GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISW 303 (394)
Q Consensus 230 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i----~~~~i~~--~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 303 (394)
..+.++|||+|||..+|+++|+++|++||.| ..+.+.. .+|||||+|.+.++|.+|+..|||..|+|+.|+|++
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3456899999999999999999999999998 5666654 379999999999999999999999999999999999
Q ss_pred cccCCCC
Q 016188 304 GRKQDVT 310 (394)
Q Consensus 304 a~~~~~~ 310 (394)
++++..+
T Consensus 102 a~~~~~~ 108 (115)
T 2cpx_A 102 GKNKKQR 108 (115)
T ss_dssp CCCCSCC
T ss_pred ccCCCCC
Confidence 9987654
No 264
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.1e-16 Score=114.49 Aligned_cols=75 Identities=24% Similarity=0.489 Sum_probs=69.0
Q ss_pred ceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeee
Q 016188 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRL 99 (394)
Q Consensus 24 ~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~ 99 (394)
++|||+|||+++++++|+++|++||.|.+|.+.+++.+++++|||||+|.+.++|.+|++.++ ..+.++.+.++.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~ 75 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKV 75 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEe
Confidence 579999999999999999999999999999999998889999999999999999999999988 888886655543
No 265
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.66 E-value=8.4e-17 Score=121.36 Aligned_cols=84 Identities=26% Similarity=0.476 Sum_probs=75.2
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCC-CCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceE
Q 016188 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDP-NTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190 (394)
Q Consensus 112 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~-~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~ 190 (394)
.....++|||+|||+++++++|+++| +.|| |.++.++.++ .+|+++|||||+|.+.++|.+|+ .+++..+.|+.|.
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F-~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFF-RGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHS-CSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHH-HhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 34557899999999999999999999 8999 9999999998 58999999999999999999999 9999999999999
Q ss_pred EeecCCCC
Q 016188 191 ISAATPKK 198 (394)
Q Consensus 191 v~~a~~~~ 198 (394)
|.++.++.
T Consensus 92 V~~a~~~~ 99 (100)
T 2j76_E 92 VDVADQAQ 99 (100)
T ss_dssp CEECCCSC
T ss_pred EEeccCCC
Confidence 99987653
No 266
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.66 E-value=1.5e-16 Score=123.68 Aligned_cols=81 Identities=15% Similarity=0.112 Sum_probs=72.0
Q ss_pred CCCcCCcceEEEcCCCCcCCHHHHHHHHhhcCC---ceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCc
Q 016188 17 PMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGE---VVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGT 93 (394)
Q Consensus 17 ~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~---v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~ 93 (394)
.....+.++|||+|||+++++++|+++|+.||. |.+|+|+.++. |+++|||||+|.+.++|++|++ +++..|.++
T Consensus 11 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr 88 (118)
T 2db1_A 11 GPEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHR 88 (118)
T ss_dssp SSCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCe
Confidence 344567789999999999999999999999999 89999999984 9999999999999999999998 899999986
Q ss_pred cceeee
Q 016188 94 EQNFRL 99 (394)
Q Consensus 94 ~~~v~~ 99 (394)
.+.|..
T Consensus 89 ~i~V~~ 94 (118)
T 2db1_A 89 YIEVFK 94 (118)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 555543
No 267
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.66 E-value=5.1e-17 Score=120.10 Aligned_cols=81 Identities=32% Similarity=0.573 Sum_probs=74.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeecCC
Q 016188 117 HSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATP 196 (394)
Q Consensus 117 ~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a~~ 196 (394)
++|||+|||+++++++|+++| +.||.|.++.++.++.+|+++|||||+|.+.+ |.+|+..+++..+.|+.|.|.++.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELF-SQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTH-HHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHH-HhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 579999999999999999999 89999999999999999999999999999999 9999999999999999999999977
Q ss_pred CCC
Q 016188 197 KKT 199 (394)
Q Consensus 197 ~~~ 199 (394)
...
T Consensus 80 ~~~ 82 (90)
T 2ki2_A 80 KKS 82 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 654
No 268
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=5.6e-16 Score=115.44 Aligned_cols=77 Identities=19% Similarity=0.412 Sum_probs=67.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCc-EEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccCCC
Q 016188 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRG-CGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDV 309 (394)
Q Consensus 232 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~g-~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 309 (394)
..++|||+|||..+++++|+++|++||.|.+|.+.+..+ ||||+|.+.++|.+|+. ||+..|+|+.|+|.++.++..
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKEF 84 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCCC
Confidence 457999999999999999999999999999983333322 99999999999999999 999999999999998876544
No 269
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.66 E-value=3.5e-16 Score=119.02 Aligned_cols=84 Identities=17% Similarity=0.303 Sum_probs=76.1
Q ss_pred CCCCcceEEEcCCCCCC------CHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeec
Q 016188 112 DAGPEHSIFVGDLAPDV------TDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCS 185 (394)
Q Consensus 112 ~~~~~~~l~v~nlp~~~------t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~ 185 (394)
.....++|||+|||+.+ ++++|+++| +.||.|..+.++ +.+|+++|||||+|.+.++|.+|++.|++..+.
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F-~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIF-SKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHH-GGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHH-hcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 34457899999999999 789999999 899999999988 467999999999999999999999999999999
Q ss_pred Cc-ceEEeecCCCC
Q 016188 186 TR-PMRISAATPKK 198 (394)
Q Consensus 186 g~-~l~v~~a~~~~ 198 (394)
|+ .|.|.++....
T Consensus 88 g~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 88 KQHTFRVNLFTDFD 101 (105)
T ss_dssp TTCEEEEECSCCCC
T ss_pred CCceEEEEEcchHh
Confidence 98 99999987543
No 270
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.66 E-value=1.7e-16 Score=114.67 Aligned_cols=73 Identities=16% Similarity=0.222 Sum_probs=66.2
Q ss_pred cceEEEcCCCCcC------CHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCc-cc
Q 016188 23 VRTLWIGDLQYWF------DENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGT-EQ 95 (394)
Q Consensus 23 ~~~v~V~nLp~~~------~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~-~~ 95 (394)
+++|||+|||..+ ++++|+++|++||.|.+|++.+ .+|+++|||||+|.+.++|.+|++.|++..+.++ .+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3789999999999 7799999999999999999883 4789999999999999999999999999999997 55
Q ss_pred ee
Q 016188 96 NF 97 (394)
Q Consensus 96 ~v 97 (394)
.|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 44
No 271
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=6.7e-16 Score=116.93 Aligned_cols=78 Identities=28% Similarity=0.463 Sum_probs=68.1
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC------CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEE
Q 016188 229 NDITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQQQVRIS 302 (394)
Q Consensus 229 ~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 302 (394)
.....++|||+|||..+++++|+++|+.|+. +.++.+ +|||||+|.+.++|.+|++.||+..|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~---~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSVR---ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCSE---EEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCeE---EEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3456689999999999999999999998854 444433 5899999999999999999999999999999999
Q ss_pred EcccCCC
Q 016188 303 WGRKQDV 309 (394)
Q Consensus 303 ~a~~~~~ 309 (394)
+++++..
T Consensus 88 ~a~~~~~ 94 (102)
T 2fc8_A 88 WAKPKGE 94 (102)
T ss_dssp ECCCCCS
T ss_pred EecCCCC
Confidence 9998754
No 272
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.2e-16 Score=119.19 Aligned_cols=82 Identities=17% Similarity=0.207 Sum_probs=74.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEe
Q 016188 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRIS 192 (394)
Q Consensus 113 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~ 192 (394)
....++|||+|||+++++++|+++| +.||. ..|.|+.++ +++++|||||+|.+.++|++|+ .+++..+.++.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F-~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFF-SPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELF 87 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSS-CSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEE
Confidence 3457899999999999999999999 89995 599999997 8999999999999999999999 579999999999999
Q ss_pred ecCCCC
Q 016188 193 AATPKK 198 (394)
Q Consensus 193 ~a~~~~ 198 (394)
++....
T Consensus 88 ~~~~~~ 93 (102)
T 1wez_A 88 LNSTAG 93 (102)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 887654
No 273
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.66 E-value=7.1e-16 Score=115.38 Aligned_cols=79 Identities=28% Similarity=0.362 Sum_probs=70.8
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeC--CCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccC
Q 016188 230 DITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPM--GRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307 (394)
Q Consensus 230 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~--~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 307 (394)
....++|||+|||..+++++|+++|+.||.|..+ ... .+|+|||+|.+.++|.+|+..|||..|+|+.|+|.+++++
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 3456899999999999999999999999999877 222 3799999999999999999999999999999999999876
Q ss_pred CC
Q 016188 308 DV 309 (394)
Q Consensus 308 ~~ 309 (394)
..
T Consensus 92 ~~ 93 (96)
T 1fjc_A 92 GG 93 (96)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 274
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.66 E-value=2.6e-16 Score=124.73 Aligned_cols=83 Identities=16% Similarity=0.200 Sum_probs=76.6
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhhCCC---eeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcc
Q 016188 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPS---VRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRP 188 (394)
Q Consensus 112 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~---v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~ 188 (394)
.....++|||+|||+++|+++|+++| +.||. |..|.|+.++. |+++|||||+|.+.++|++|++ +++..+.|+.
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F-~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFL-SDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHT-TTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHH-HHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 34457899999999999999999999 89999 89999999987 9999999999999999999997 9999999999
Q ss_pred eEEeecCCC
Q 016188 189 MRISAATPK 197 (394)
Q Consensus 189 l~v~~a~~~ 197 (394)
|.|.++..+
T Consensus 117 i~V~~a~~~ 125 (136)
T 2hgl_A 117 IEVFKSHRT 125 (136)
T ss_dssp EEEEECCHH
T ss_pred EEEEECChH
Confidence 999998543
No 275
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.65 E-value=4.4e-16 Score=114.27 Aligned_cols=71 Identities=23% Similarity=0.450 Sum_probs=68.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccc----C-------CeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCceeCcEEEE
Q 016188 232 TNTTIFVGNLDPNVTEEELKQTFLHF----G-------EIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVR 300 (394)
Q Consensus 232 ~~~~l~v~nl~~~~t~~~l~~~F~~~----G-------~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~ 300 (394)
..++|||+|||..+++++|+++|++| | .|.++.+.+++|||||+|.+.++|.+|+ .|||..|+|+.|+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 83 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 83 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEEE
Confidence 45899999999999999999999999 8 9999999999999999999999999999 9999999999999
Q ss_pred EEE
Q 016188 301 ISW 303 (394)
Q Consensus 301 v~~ 303 (394)
|+.
T Consensus 84 V~r 86 (87)
T 2hzc_A 84 IRR 86 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 973
No 276
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.2e-16 Score=122.08 Aligned_cols=79 Identities=11% Similarity=0.156 Sum_probs=71.1
Q ss_pred CcCCcceEEEcCCCCcCCHHHHHHHHhhcCCc-eEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCcccee
Q 016188 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEV-VSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNF 97 (394)
Q Consensus 19 ~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v-~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v 97 (394)
.+.+.++|||+|||+++++++|+++|+.||.| .+|+|+.++ +|+++|||||+|.+.++|.+|++. ++..|.++.+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 45567899999999999999999999999999 889999998 999999999999999999999977 999999855544
Q ss_pred ee
Q 016188 98 RL 99 (394)
Q Consensus 98 ~~ 99 (394)
..
T Consensus 89 ~~ 90 (114)
T 2cpy_A 89 HV 90 (114)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 277
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.65 E-value=6.2e-16 Score=121.14 Aligned_cols=85 Identities=15% Similarity=0.301 Sum_probs=75.5
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHH----HHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecC
Q 016188 111 PDAGPEHSIFVGDLAPDVTDYLLQ----ETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCST 186 (394)
Q Consensus 111 ~~~~~~~~l~v~nlp~~~t~~~l~----~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g 186 (394)
....+.++|||+|||+.+++++|+ ++| +.||.|.+|.+.. +++++|||||+|.+.++|..|++.||+..+.|
T Consensus 24 ~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F-~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g 99 (127)
T 2a3j_A 24 PHTEPSQVVLITNINPEVPKEKLQALLYALA-SSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQG 99 (127)
T ss_dssp CCCSCCSEEEEESCCTTSCHHHHHHHHHHHH-HHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHh-ccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCC
Confidence 344568899999999999999876 689 8999999988754 58899999999999999999999999999999
Q ss_pred cceEEeecCCCCC
Q 016188 187 RPMRISAATPKKT 199 (394)
Q Consensus 187 ~~l~v~~a~~~~~ 199 (394)
+.|.|.++..+..
T Consensus 100 r~l~V~~a~~~~~ 112 (127)
T 2a3j_A 100 NPLVITFSETPQS 112 (127)
T ss_dssp SCCEEEECCCCCH
T ss_pred CEEEEEEccCcch
Confidence 9999999987654
No 278
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.65 E-value=2e-16 Score=119.31 Aligned_cols=82 Identities=16% Similarity=0.314 Sum_probs=68.9
Q ss_pred CCCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecC-CCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccc
Q 016188 17 PMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNK-ITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQ 95 (394)
Q Consensus 17 ~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~-~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~ 95 (394)
+......++|||+|||+++++++|+++|++|| |.+|+++++. .+|+++|||||+|.+.++|.+|+ .|++..+.++.+
T Consensus 13 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l 90 (100)
T 2j76_E 13 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRI 90 (100)
T ss_dssp -------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCC
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEE
Confidence 34556779999999999999999999999999 9999999987 58999999999999999999999 899999999665
Q ss_pred eeeee
Q 016188 96 NFRLN 100 (394)
Q Consensus 96 ~v~~~ 100 (394)
.|...
T Consensus 91 ~V~~a 95 (100)
T 2j76_E 91 RVDVA 95 (100)
T ss_dssp CCEEC
T ss_pred EEEec
Confidence 54443
No 279
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.65 E-value=6.3e-16 Score=121.53 Aligned_cols=83 Identities=22% Similarity=0.430 Sum_probs=78.1
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeec
Q 016188 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (394)
Q Consensus 115 ~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a 194 (394)
..++|||+|||+++++++|+++| +.||.|..|.++.++.+++++|||||+|.+.++|+.|+ .+++..+.|+.|.|.++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHF-SSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHH-HTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 36799999999999999999999 89999999999999889999999999999999999999 89999999999999998
Q ss_pred CCCCC
Q 016188 195 TPKKT 199 (394)
Q Consensus 195 ~~~~~ 199 (394)
.....
T Consensus 113 ~~~~~ 117 (124)
T 2jwn_A 113 RTNMP 117 (124)
T ss_dssp SCCCS
T ss_pred CCCCC
Confidence 76543
No 280
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.8e-16 Score=120.73 Aligned_cols=74 Identities=18% Similarity=0.273 Sum_probs=68.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-----CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEccc
Q 016188 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG-----RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRK 306 (394)
Q Consensus 232 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 306 (394)
...+|||+|||+++|+++|+++|+.| .|.+|.|+.+ +|||||+|.+.++|.+|+ .+|+..|+||.|+|..+..
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 35799999999999999999999999 8999999864 799999999999999998 7999999999999998875
Q ss_pred C
Q 016188 307 Q 307 (394)
Q Consensus 307 ~ 307 (394)
+
T Consensus 93 ~ 93 (109)
T 2dnn_A 93 R 93 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 281
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=1e-15 Score=115.24 Aligned_cols=80 Identities=21% Similarity=0.414 Sum_probs=69.9
Q ss_pred CCCCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccc
Q 016188 16 HPMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQ 95 (394)
Q Consensus 16 ~~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~ 95 (394)
.+....+.++|||+|||+++++++|+++|++||.|.+|++.++ ++||||+|.+.++|.+|++.|++..+.++.+
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l 81 (99)
T 2cpj_A 8 GEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQL 81 (99)
T ss_dssp CSCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCC
T ss_pred CCCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceE
Confidence 3445577899999999999999999999999999999999865 5999999999999999999999999998554
Q ss_pred eeeeeccc
Q 016188 96 NFRLNWAS 103 (394)
Q Consensus 96 ~v~~~~~~ 103 (394)
.+.++.
T Consensus 82 --~v~~a~ 87 (99)
T 2cpj_A 82 --RVRFAC 87 (99)
T ss_dssp --EEEESS
T ss_pred --EEEEcC
Confidence 445544
No 282
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.4e-15 Score=113.92 Aligned_cols=77 Identities=16% Similarity=0.256 Sum_probs=66.6
Q ss_pred CcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceee
Q 016188 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (394)
Q Consensus 19 ~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~ 98 (394)
..+..++|||+|||+++++++|+++|++||.|. +.++.+ ++++||||+|.+.++|.+|++.|++..+.++.+.|.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 455678999999999999999999999999986 666654 478999999999999999999999999999655544
Q ss_pred ee
Q 016188 99 LN 100 (394)
Q Consensus 99 ~~ 100 (394)
..
T Consensus 90 ~a 91 (97)
T 2e5j_A 90 LA 91 (97)
T ss_dssp EC
T ss_pred Ec
Confidence 43
No 283
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.65 E-value=4e-16 Score=121.58 Aligned_cols=78 Identities=26% Similarity=0.499 Sum_probs=72.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccCCCC
Q 016188 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDVT 310 (394)
Q Consensus 231 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~ 310 (394)
...++|||+|+ ++++++|+++|++||.|.+|.+...+|||||+|.+.++|.+|+..|||..|+|+.|+|.+++++...
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~~ 114 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPML 114 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC-
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCCC
Confidence 45689999996 6999999999999999999999999999999999999999999999999999999999999977543
No 284
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.65 E-value=4.4e-16 Score=121.03 Aligned_cols=82 Identities=17% Similarity=0.197 Sum_probs=76.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhhCCC---eeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcce
Q 016188 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPS---VRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189 (394)
Q Consensus 113 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~---v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l 189 (394)
....++|||+|||+++++++|+++| +.||. |..|+|+.++. |+++|||||+|.+.++|++|++ +++..+.|+.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F-~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 90 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFL-SDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYI 90 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHT-TTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHH-HHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEE
Confidence 3457889999999999999999999 89999 89999999987 9999999999999999999997 99999999999
Q ss_pred EEeecCCC
Q 016188 190 RISAATPK 197 (394)
Q Consensus 190 ~v~~a~~~ 197 (394)
.|.++..+
T Consensus 91 ~V~~a~~~ 98 (118)
T 2db1_A 91 EVFKSHRT 98 (118)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
Confidence 99998643
No 285
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.6e-15 Score=111.92 Aligned_cols=76 Identities=25% Similarity=0.392 Sum_probs=67.1
Q ss_pred CcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceee
Q 016188 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (394)
Q Consensus 19 ~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~ 98 (394)
...+.++|||+|||+++++++|+++|++||.|.+|++. ++||||+|.+.++|.+|++.|++..+.++. +.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~--l~ 73 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVN--IN 73 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCB--CE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcE--EE
Confidence 45678999999999999999999999999999999987 489999999999999999999999999855 45
Q ss_pred eecccC
Q 016188 99 LNWASF 104 (394)
Q Consensus 99 ~~~~~~ 104 (394)
+.++..
T Consensus 74 v~~a~~ 79 (90)
T 2dnq_A 74 VEASKN 79 (90)
T ss_dssp EECSSC
T ss_pred EEECCC
Confidence 555443
No 286
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=7e-16 Score=117.28 Aligned_cols=77 Identities=12% Similarity=0.185 Sum_probs=65.7
Q ss_pred CcCCcceEEEcCCCCc-CCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCC--CCCCCccc
Q 016188 19 TLEEVRTLWIGDLQYW-FDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNG--TPMPGTEQ 95 (394)
Q Consensus 19 ~~~~~~~v~V~nLp~~-~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~--~~~~~~~~ 95 (394)
...++++|||+|||++ +++++|+++|++||.|.+|+++++ ++||||+|.+.++|..|++.|++ ..+.++.
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~- 93 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRC- 93 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSC-
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEE-
Confidence 5667899999999998 999999999999999999999754 59999999999999999998865 4577755
Q ss_pred eeeeeccc
Q 016188 96 NFRLNWAS 103 (394)
Q Consensus 96 ~v~~~~~~ 103 (394)
+.+.++.
T Consensus 94 -l~V~~a~ 100 (112)
T 1x4f_A 94 -VKVDLSE 100 (112)
T ss_dssp -CEEEEEC
T ss_pred -EEEEECc
Confidence 4555554
No 287
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.65 E-value=3.2e-16 Score=122.15 Aligned_cols=80 Identities=18% Similarity=0.206 Sum_probs=69.6
Q ss_pred CCCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCce--EEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCcc
Q 016188 17 PMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVV--SIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTE 94 (394)
Q Consensus 17 ~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~--~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~ 94 (394)
+....+.++|||+|||+++++++|+++|++| .|. +|+|+.++. |+++|||||+|.+.++|++|++. ++..|.++.
T Consensus 36 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~ 112 (126)
T 2hgm_A 36 SADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRY 112 (126)
T ss_dssp TTCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEE
Confidence 3455677899999999999999999999999 677 899999985 99999999999999999999975 778888876
Q ss_pred ceeee
Q 016188 95 QNFRL 99 (394)
Q Consensus 95 ~~v~~ 99 (394)
+.|..
T Consensus 113 I~V~~ 117 (126)
T 2hgm_A 113 IEVFK 117 (126)
T ss_dssp CCCEE
T ss_pred EEEEE
Confidence 55544
No 288
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=6.7e-16 Score=115.51 Aligned_cols=78 Identities=12% Similarity=0.284 Sum_probs=71.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhcccCCeEEE-EEeCCC--cEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccC
Q 016188 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNV-KIPMGR--GCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307 (394)
Q Consensus 231 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~-~i~~~~--g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 307 (394)
...++|||+|||..+++++|+++|++||.|.++ .++.++ +.|||+|.+.++|.+|+..|||..|+|+.|+|+++.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 345899999999999999999999999999999 477653 55999999999999999999999999999999999887
Q ss_pred C
Q 016188 308 D 308 (394)
Q Consensus 308 ~ 308 (394)
.
T Consensus 93 ~ 93 (96)
T 2e44_A 93 M 93 (96)
T ss_dssp C
T ss_pred c
Confidence 4
No 289
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.1e-15 Score=115.53 Aligned_cols=84 Identities=25% Similarity=0.444 Sum_probs=75.3
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceE
Q 016188 111 PDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190 (394)
Q Consensus 111 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~ 190 (394)
....+.++|||+|||+++++++|+++| +.||.| .++.+ .+++++|||||+|.+.++|++|++.|++..+.|+.|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F-~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 84 (101)
T 2fc9_A 10 TWSGESKTLVLSNLSYSATEETLQEVF-EKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR 84 (101)
T ss_dssp CCSCCCSEEEEESCCTTCCHHHHHHHC-SSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHH-HhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEE
Confidence 345668999999999999999999999 899976 55666 6789999999999999999999999999999999999
Q ss_pred EeecCCCCC
Q 016188 191 ISAATPKKT 199 (394)
Q Consensus 191 v~~a~~~~~ 199 (394)
|.++.++..
T Consensus 85 v~~a~~~~~ 93 (101)
T 2fc9_A 85 LELQGPRGS 93 (101)
T ss_dssp EEECSSCCC
T ss_pred EEEcCCCCC
Confidence 999987654
No 290
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=9.9e-16 Score=115.97 Aligned_cols=87 Identities=32% Similarity=0.491 Sum_probs=78.1
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcce
Q 016188 110 RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189 (394)
Q Consensus 110 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l 189 (394)
.....+.++|||+|||+++++++|+++| +.| ..+.++.++.+++++|||||+|.+.++|++|++.|++..+.|+.|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F-~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 2fc8_A 9 NARSQPSKTLFVKGLSEDTTEETLKESF-DGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKV 84 (102)
T ss_dssp SSSSCCCSSEEEECCCTTCCHHHHHHTS-TTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHh-cCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 3445678999999999999999999999 766 478888888899999999999999999999999999999999999
Q ss_pred EEeecCCCCCc
Q 016188 190 RISAATPKKTT 200 (394)
Q Consensus 190 ~v~~a~~~~~~ 200 (394)
.|.++.++...
T Consensus 85 ~V~~a~~~~~~ 95 (102)
T 2fc8_A 85 TLDWAKPKGEG 95 (102)
T ss_dssp EEEECCCCCSS
T ss_pred EEEEecCCCCC
Confidence 99999877654
No 291
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.64 E-value=2.4e-16 Score=113.89 Aligned_cols=73 Identities=16% Similarity=0.350 Sum_probs=67.5
Q ss_pred cceEEEcCCCCCC------CHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCc-c
Q 016188 116 EHSIFVGDLAPDV------TDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTR-P 188 (394)
Q Consensus 116 ~~~l~v~nlp~~~------t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~-~ 188 (394)
+++|||+|||+.+ ++++|+++| +.||.|..+.++ +.+|+++|||||+|.+.++|.+|++.|++..+.|+ .
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F-~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~ 77 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIF-SKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 77 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHH-HTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHH-hhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCcee
Confidence 3689999999999 789999999 899999999987 46799999999999999999999999999999999 8
Q ss_pred eEE
Q 016188 189 MRI 191 (394)
Q Consensus 189 l~v 191 (394)
|.|
T Consensus 78 l~V 80 (81)
T 2krb_A 78 FRV 80 (81)
T ss_dssp CCC
T ss_pred EEe
Confidence 876
No 292
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.64 E-value=1.7e-16 Score=117.24 Aligned_cols=76 Identities=24% Similarity=0.509 Sum_probs=70.6
Q ss_pred ceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeeee
Q 016188 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLN 100 (394)
Q Consensus 24 ~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~~ 100 (394)
++|||+|||+++++++|+++|++||.|.+|++.+++.+++++|||||+|.+.+ |.+|++.|++..+.++.+.|...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a 77 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEA 77 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEc
Confidence 68999999999999999999999999999999999888999999999999999 99999999999999966555543
No 293
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.64 E-value=1.5e-15 Score=122.77 Aligned_cols=84 Identities=13% Similarity=0.233 Sum_probs=72.8
Q ss_pred CcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceee
Q 016188 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (394)
Q Consensus 19 ~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~ 98 (394)
.+....+|||+||++.+++++|+++|++||.|.+|++.... +++||||+|.+.++|++|++.|+|..|.+....++
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~ 117 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 117 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEE
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEE
Confidence 34455779999999999999999999999999999987543 57899999999999999999999999987667778
Q ss_pred eecccCCC
Q 016188 99 LNWASFGI 106 (394)
Q Consensus 99 ~~~~~~~~ 106 (394)
+.|+....
T Consensus 118 V~~Ak~~~ 125 (164)
T 1sjr_A 118 IDFSKLTS 125 (164)
T ss_dssp EEECSSSS
T ss_pred EEEecCCc
Confidence 88876543
No 294
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.2e-16 Score=123.10 Aligned_cols=80 Identities=19% Similarity=0.164 Sum_probs=70.5
Q ss_pred CcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceee
Q 016188 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (394)
Q Consensus 19 ~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~ 98 (394)
...+.++|||+|||+++++++|+++|..||.|.++.++.+..+|+++|||||+|.+.++|.+||+ |++..|.++.+.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34566899999999999999999999999999886677766689999999999999999999998 99999999665554
Q ss_pred e
Q 016188 99 L 99 (394)
Q Consensus 99 ~ 99 (394)
.
T Consensus 100 ~ 100 (124)
T 1wel_A 100 P 100 (124)
T ss_dssp E
T ss_pred E
Confidence 4
No 295
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.64 E-value=1e-15 Score=112.53 Aligned_cols=76 Identities=34% Similarity=0.507 Sum_probs=62.9
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-CcEEEEEeCchHHHHHHHHHhCCce--eCcEEEEEEEccc
Q 016188 230 DITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG-RGCGFVQFAARASAEEAILRMQGHM--IGQQQVRISWGRK 306 (394)
Q Consensus 230 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~-~g~~fV~f~~~~~a~~a~~~l~g~~--~~g~~l~v~~a~~ 306 (394)
....++|||+|||+++|+++|+++|++||.|.++.|+.+ ||||||+|.+.++|.+ +++.. ++|+.|.|.++.+
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCC
Confidence 345689999999999999999999999999999999875 8999999999999873 45655 5699999999987
Q ss_pred CCC
Q 016188 307 QDV 309 (394)
Q Consensus 307 ~~~ 309 (394)
+..
T Consensus 84 k~~ 86 (89)
T 3d2w_A 84 KHN 86 (89)
T ss_dssp ---
T ss_pred CCc
Confidence 653
No 296
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.64 E-value=2.1e-16 Score=112.49 Aligned_cols=75 Identities=25% Similarity=0.448 Sum_probs=70.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeec
Q 016188 118 SIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (394)
Q Consensus 118 ~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a 194 (394)
+|||+|||+++++++|+++| +.||.|..+.++.++.+++++|||||+|.+.++|.+|++ +++..+.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F-~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYF-GGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHH-HHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999 899999999999999999999999999999999999996 5889999999999875
No 297
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.8e-16 Score=123.42 Aligned_cols=84 Identities=17% Similarity=0.309 Sum_probs=76.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEe
Q 016188 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRIS 192 (394)
Q Consensus 113 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~ 192 (394)
.....+|||+|||+++++++|+++| +.||.|..+.++.+..+|+++|||||+|.+.++|.+|++ +++..+.|+.|.|.
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F-~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFF-KKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHS-CSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHH-HhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 3456899999999999999999999 899999987777777789999999999999999999998 99999999999999
Q ss_pred ecCCCC
Q 016188 193 AATPKK 198 (394)
Q Consensus 193 ~a~~~~ 198 (394)
++..+.
T Consensus 100 ~a~~~~ 105 (124)
T 1wel_A 100 PITKKG 105 (124)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 987643
No 298
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.63 E-value=3.3e-16 Score=111.42 Aligned_cols=74 Identities=18% Similarity=0.343 Sum_probs=68.0
Q ss_pred eEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeee
Q 016188 25 TLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRL 99 (394)
Q Consensus 25 ~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~ 99 (394)
+|||+|||+++++++|+++|++||.|.+|.++.++.+++++|||||+|.+.++|.+|++. ++..+.++.+.++.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 599999999999999999999999999999999988899999999999999999999974 88889887666543
No 299
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.63 E-value=1.2e-16 Score=120.87 Aligned_cols=85 Identities=19% Similarity=0.392 Sum_probs=77.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEe
Q 016188 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRIS 192 (394)
Q Consensus 113 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~ 192 (394)
..+.++|||+|||+++++++|+++| +.||.|.. .++.+..+++++|||||+|.+.++|++|++ |++..+.|+.|.|.
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAI-SELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHH-HHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 3457899999999999999999999 89999988 677777789999999999999999999998 99999999999999
Q ss_pred ecCCCCCc
Q 016188 193 AATPKKTT 200 (394)
Q Consensus 193 ~a~~~~~~ 200 (394)
++.++...
T Consensus 91 ~a~~~~~~ 98 (101)
T 1fj7_A 91 KPKGRDGT 98 (101)
T ss_dssp CCSCCCCS
T ss_pred EcCCCCCC
Confidence 99876543
No 300
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.4e-15 Score=111.05 Aligned_cols=78 Identities=23% Similarity=0.432 Sum_probs=68.0
Q ss_pred CCCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHc-CCCCCCCccc
Q 016188 17 PMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTY-NGTPMPGTEQ 95 (394)
Q Consensus 17 ~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l-~~~~~~~~~~ 95 (394)
+....+.++|||+|||+++++++|+++|++||.|.+|++.++ ++||||+|.+.++|.+|++.| ++..+.++.
T Consensus 6 ~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~- 78 (85)
T 2ytc_A 6 SGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRR- 78 (85)
T ss_dssp CCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEE-
T ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCE-
Confidence 344567789999999999999999999999999999999875 599999999999999999988 888998854
Q ss_pred eeeeecc
Q 016188 96 NFRLNWA 102 (394)
Q Consensus 96 ~v~~~~~ 102 (394)
+.+.|+
T Consensus 79 -l~v~~a 84 (85)
T 2ytc_A 79 -LNVKWG 84 (85)
T ss_dssp -CCEEEC
T ss_pred -EEEEec
Confidence 444443
No 301
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.63 E-value=5.7e-16 Score=118.21 Aligned_cols=77 Identities=14% Similarity=0.084 Sum_probs=66.8
Q ss_pred CcCCcceEEEcCCCCcCCHHHHHHHHhhcC-CceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCcccee
Q 016188 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTG-EVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNF 97 (394)
Q Consensus 19 ~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v 97 (394)
.+...++|||+|||+++++++|+++|++|| .|..|++... +++|||||+|.+.++|++|++.||+..+.++.+.|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 455668999999999999999999999999 8999988643 37899999999999999999999999999965444
Q ss_pred ee
Q 016188 98 RL 99 (394)
Q Consensus 98 ~~ 99 (394)
..
T Consensus 100 ~~ 101 (111)
T 2jvr_A 100 ER 101 (111)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 302
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=9.3e-16 Score=110.46 Aligned_cols=72 Identities=22% Similarity=0.320 Sum_probs=65.1
Q ss_pred cEEEEcCCCCCCCHHH----HHHHhccc-CCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccCC
Q 016188 234 TTIFVGNLDPNVTEEE----LKQTFLHF-GEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308 (394)
Q Consensus 234 ~~l~v~nl~~~~t~~~----l~~~F~~~-G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 308 (394)
+.|||+|||+.+++++ |+++|++| |+|.+|. .|+|||+|.+.++|.+|++.|+|..+.||.|+|++|+.+.
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt----gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~s 85 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT----GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNR 85 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC----TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSC
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe----cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCc
Confidence 4499999999999988 55899999 5999983 3999999999999999999999999999999999999765
Q ss_pred C
Q 016188 309 V 309 (394)
Q Consensus 309 ~ 309 (394)
.
T Consensus 86 d 86 (96)
T 2diu_A 86 E 86 (96)
T ss_dssp C
T ss_pred c
Confidence 4
No 303
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.63 E-value=2.3e-16 Score=125.48 Aligned_cols=80 Identities=21% Similarity=0.236 Sum_probs=68.7
Q ss_pred CCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCcccee
Q 016188 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNF 97 (394)
Q Consensus 18 ~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v 97 (394)
......++|||+|||+++++++|+++|++|| |.+|+|+.++ +++++|||||+|.+.++|++|| .+++..|.++.+.|
T Consensus 41 ~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~-~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V 117 (139)
T 2hgn_A 41 VQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP-DGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIEL 117 (139)
T ss_dssp ----CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS-SSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC-CCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEE
Confidence 3556678999999999999999999999999 6699999998 4999999999999999999999 78999999976555
Q ss_pred eee
Q 016188 98 RLN 100 (394)
Q Consensus 98 ~~~ 100 (394)
...
T Consensus 118 ~~a 120 (139)
T 2hgn_A 118 FLN 120 (139)
T ss_dssp EEC
T ss_pred EEC
Confidence 443
No 304
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.8e-16 Score=121.07 Aligned_cols=88 Identities=23% Similarity=0.377 Sum_probs=76.1
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEE
Q 016188 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191 (394)
Q Consensus 112 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v 191 (394)
...+.++|||+|||+++++++|+++| +.||.|..+.+..+..+++++|||||+|.+.++|+.|++.|++..+.|+.|.|
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f-~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLF-ARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHT-HHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHH-HHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34567899999999999999999999 89999954433333337899999999999999999999999999999999999
Q ss_pred eecCCCCCc
Q 016188 192 SAATPKKTT 200 (394)
Q Consensus 192 ~~a~~~~~~ 200 (394)
.++.++...
T Consensus 100 ~~a~~~~~~ 108 (115)
T 2cpx_A 100 EFGKNKKQR 108 (115)
T ss_dssp EECCCCSCC
T ss_pred EEccCCCCC
Confidence 999877554
No 305
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.63 E-value=3.9e-15 Score=112.81 Aligned_cols=80 Identities=30% Similarity=0.465 Sum_probs=72.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEe
Q 016188 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRIS 192 (394)
Q Consensus 113 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~ 192 (394)
..+.++|||+|||+++++++|+++| +.||.|..+.++ ++||||+|.+.++|++|++.|++..+.|+.|.|.
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F-~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAF-SQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 78 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHH-HHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEE
Confidence 4457899999999999999999999 899999999886 4599999999999999999999999999999999
Q ss_pred ecCCCCCcc
Q 016188 193 AATPKKTTG 201 (394)
Q Consensus 193 ~a~~~~~~~ 201 (394)
++.++....
T Consensus 79 ~a~~~~~~~ 87 (103)
T 2dgu_A 79 FAKPPDQKR 87 (103)
T ss_dssp ECCCCCCCC
T ss_pred EcCCCcccc
Confidence 998776543
No 306
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.63 E-value=6.6e-16 Score=134.28 Aligned_cols=82 Identities=17% Similarity=0.216 Sum_probs=76.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhhCC--CeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEe
Q 016188 115 PEHSIFVGDLAPDVTDYLLQETFRSQYP--SVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRIS 192 (394)
Q Consensus 115 ~~~~l~v~nlp~~~t~~~l~~~f~~~~G--~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~ 192 (394)
..++|||+||++++++++|+++| +.|| .|.+|+|+.++.+++++|||||+|.+.++|.+||+.|++..|.|+.|.|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F-~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAV-HSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHH-HTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHH-HHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 46789999999999999999999 8999 99999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 016188 193 AATPK 197 (394)
Q Consensus 193 ~a~~~ 197 (394)
++.+.
T Consensus 146 ~a~~~ 150 (229)
T 3q2s_C 146 PVNKQ 150 (229)
T ss_dssp ECCHH
T ss_pred ECCCC
Confidence 98643
No 307
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.63 E-value=1.4e-15 Score=114.90 Aligned_cols=78 Identities=24% Similarity=0.395 Sum_probs=68.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhcccCCeEE-----EEEeCCCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcc
Q 016188 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVN-----VKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (394)
Q Consensus 231 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~-----~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 305 (394)
...++|||+|||..+|+++|+++|++||.|.+ ......+|||||+|.+.++|.+|++ ||+..|.|+.|+|.+++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 35689999999999999999999999997766 2223358999999999999999998 99999999999999998
Q ss_pred cCCC
Q 016188 306 KQDV 309 (394)
Q Consensus 306 ~~~~ 309 (394)
++..
T Consensus 94 ~~~~ 97 (101)
T 1fj7_A 94 GRDG 97 (101)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 308
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.62 E-value=6.4e-16 Score=117.99 Aligned_cols=80 Identities=14% Similarity=0.142 Sum_probs=71.5
Q ss_pred CCcCCcceEEEcCCCCcCCHHHHHHHHhhcCC---ceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCcc
Q 016188 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGE---VVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTE 94 (394)
Q Consensus 18 ~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~---v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~ 94 (394)
....+.++|||+|||+++++++|+++|+.||. |.+|+|+.++. |+++|||||+|.+.++|.+|++ +++..+.++.
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 34567789999999999999999999999988 89999999985 9999999999999999999998 8999998866
Q ss_pred ceeee
Q 016188 95 QNFRL 99 (394)
Q Consensus 95 ~~v~~ 99 (394)
+.|..
T Consensus 84 i~V~~ 88 (107)
T 2lmi_A 84 VEVYE 88 (107)
T ss_dssp CCCEE
T ss_pred EEEEE
Confidence 55543
No 309
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=5.1e-15 Score=109.69 Aligned_cols=82 Identities=20% Similarity=0.382 Sum_probs=74.2
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcce
Q 016188 110 RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189 (394)
Q Consensus 110 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l 189 (394)
.....+.++|||+|||+++++++|+++| +.||.|..+.+++ +||||+|.+.++|.+|++.|++..+.|+.|
T Consensus 4 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 74 (92)
T 2dgt_A 4 GSSGKASTKLHVGNISPTCTNQELRAKF-EEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRM 74 (92)
T ss_dssp SCCCCSSEEEEEESCCSSCCHHHHHHHH-HTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 3445668999999999999999999999 8999999999874 399999999999999999999999999999
Q ss_pred EEeecCCCCCc
Q 016188 190 RISAATPKKTT 200 (394)
Q Consensus 190 ~v~~a~~~~~~ 200 (394)
.|.++.++...
T Consensus 75 ~V~~a~~~~~~ 85 (92)
T 2dgt_A 75 HVQLSTSRLRT 85 (92)
T ss_dssp EEEESSCCCSC
T ss_pred EEEEccCCCCC
Confidence 99999876543
No 310
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.62 E-value=2.6e-16 Score=125.17 Aligned_cols=83 Identities=18% Similarity=0.219 Sum_probs=74.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEe
Q 016188 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRIS 192 (394)
Q Consensus 113 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~ 192 (394)
....++|||+|||+++++++|+++| +.|| |..|.|+.++. |+++|||||+|.+.++|++|+ .+++..+.++.|.|.
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F-~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFF-SPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELF 118 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHH-CSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEE
Confidence 3457899999999999999999999 8999 77999999976 999999999999999999999 889999999999999
Q ss_pred ecCCCCC
Q 016188 193 AATPKKT 199 (394)
Q Consensus 193 ~a~~~~~ 199 (394)
.+.....
T Consensus 119 ~a~~~~~ 125 (139)
T 2hgn_A 119 LNSTTGA 125 (139)
T ss_dssp ECCCSCC
T ss_pred ECCCCCC
Confidence 8876543
No 311
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.2e-15 Score=116.24 Aligned_cols=80 Identities=18% Similarity=0.260 Sum_probs=72.0
Q ss_pred ceEEEcCC----CCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCC----HHH----HHHHHH--hhCCe
Q 016188 117 HSIFVGDL----APDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLD----ENE----RNRAMT--EMNGV 182 (394)
Q Consensus 117 ~~l~v~nl----p~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~----~e~----a~~ai~--~l~~~ 182 (394)
..|+|+|| |+.+++++|+++| +.||+|.++.++.|+.||+++|||||+|.+ .++ |.+|+. .+++.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~F-s~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYF-KKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHH-HTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHH-HhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 57999999 9999999999999 899999999999999999999999999996 323 889988 78999
Q ss_pred eecCcceEEeecCCC
Q 016188 183 FCSTRPMRISAATPK 197 (394)
Q Consensus 183 ~~~g~~l~v~~a~~~ 197 (394)
.++|+.|+|......
T Consensus 82 ~I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 82 FIMGFKFEVILNKHS 96 (136)
T ss_dssp EETTEEEEEEECCTT
T ss_pred eecCcEEEEEECccc
Confidence 999999999886543
No 312
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.62 E-value=5.4e-16 Score=118.40 Aligned_cols=83 Identities=13% Similarity=0.204 Sum_probs=76.3
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhhCCC---eeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcc
Q 016188 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPS---VRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRP 188 (394)
Q Consensus 112 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~---v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~ 188 (394)
......+|||+|||+++++++|+++| +.||. |..|.++.++. |+++|||||+|.+.++|++|++ +++..+.|+.
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F-~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFF-SDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHT-TTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHH-HhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 34457899999999999999999999 89888 89999999987 9999999999999999999997 9999999999
Q ss_pred eEEeecCCC
Q 016188 189 MRISAATPK 197 (394)
Q Consensus 189 l~v~~a~~~ 197 (394)
|.|.++.++
T Consensus 84 i~V~~a~~~ 92 (107)
T 2lmi_A 84 VEVYEINNE 92 (107)
T ss_dssp CCCEECCHH
T ss_pred EEEEECCHH
Confidence 999988653
No 313
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=2e-15 Score=113.98 Aligned_cols=76 Identities=14% Similarity=0.206 Sum_probs=70.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEee
Q 016188 114 GPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISA 193 (394)
Q Consensus 114 ~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~ 193 (394)
...++|||+|||.++++++|+++| +.||.|.++.+. +++|||||+|.+.++|..|++.|++..+.|+.|.|.+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f-~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLF-QNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHH-HTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCEEEEcCCCcccCHHHHHHHH-HhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 346899999999999999999999 899999999987 3589999999999999999999999999999999999
Q ss_pred cCC
Q 016188 194 ATP 196 (394)
Q Consensus 194 a~~ 196 (394)
+.+
T Consensus 98 a~~ 100 (101)
T 2la4_A 98 GKE 100 (101)
T ss_dssp CCC
T ss_pred ccC
Confidence 865
No 314
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.1e-15 Score=112.42 Aligned_cols=76 Identities=29% Similarity=0.455 Sum_probs=65.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccCCC
Q 016188 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG-RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQDV 309 (394)
Q Consensus 232 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~-~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 309 (394)
..++|||+|||..+++++|+++|++||.|.++.|+.+ +|||||+|.+.++|++|+.. ...+.|+.|+|.+++++..
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCCC
Confidence 4589999999999999999999999999999999876 89999999999999764221 2346999999999987654
No 315
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.1e-15 Score=118.97 Aligned_cols=80 Identities=21% Similarity=0.205 Sum_probs=72.6
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhhCCCe----eEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceE
Q 016188 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSV----RGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190 (394)
Q Consensus 115 ~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v----~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~ 190 (394)
...+|||+|||+++|+++|+++| +.||.| ..|.|+.+ .+|+++|||||+|.+.++|++|++. ++..+.+|.|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F-~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFF-GQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHH-HTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHH-HhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 46789999999999999999999 899875 68999998 4799999999999999999999975 99999999999
Q ss_pred EeecCCC
Q 016188 191 ISAATPK 197 (394)
Q Consensus 191 v~~a~~~ 197 (394)
|..+..+
T Consensus 99 V~~a~~~ 105 (123)
T 2dha_A 99 LFRSTAA 105 (123)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9887543
No 316
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=8.9e-15 Score=113.45 Aligned_cols=81 Identities=22% Similarity=0.253 Sum_probs=70.3
Q ss_pred cCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcce-EEEEEcCHHHHHHHHHHcCCCCCCCccceee
Q 016188 20 LEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGY-GFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (394)
Q Consensus 20 ~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~-afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~ 98 (394)
+.....|||+|||+.+++++|+++|++||.|.+|+|... .|| |||+|.+.++|..|++.|+|..|.+....++
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~ 95 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLK 95 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEE
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEE
Confidence 334456789999999999999999999999999998752 276 9999999999999999999999998777888
Q ss_pred eecccCCC
Q 016188 99 LNWASFGI 106 (394)
Q Consensus 99 ~~~~~~~~ 106 (394)
+.++....
T Consensus 96 V~~Ak~~~ 103 (124)
T 2e5i_A 96 IEYARPTR 103 (124)
T ss_dssp EECCSCSC
T ss_pred EEEecCCc
Confidence 88886543
No 317
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.41 E-value=4.1e-17 Score=126.69 Aligned_cols=79 Identities=28% Similarity=0.405 Sum_probs=72.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhcccCCeEE--------EEEeCC------CcEEEEEeCchHHHHHHHHHhCCceeCc
Q 016188 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVN--------VKIPMG------RGCGFVQFAARASAEEAILRMQGHMIGQ 296 (394)
Q Consensus 231 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~--------~~i~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g 296 (394)
.+.++|||+|||..+++++|+++|++||.|.+ +.|+.+ +|||||+|.+.++|.+|+..||+..|+|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 35689999999999999999999999999998 778764 6899999999999999999999999999
Q ss_pred EEEEEEEcccCCC
Q 016188 297 QQVRISWGRKQDV 309 (394)
Q Consensus 297 ~~l~v~~a~~~~~ 309 (394)
+.|+|++++++..
T Consensus 85 ~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 85 NPIKVSFATRRAD 97 (116)
Confidence 9999999987653
No 318
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.61 E-value=1.2e-15 Score=114.45 Aligned_cols=84 Identities=24% Similarity=0.442 Sum_probs=75.6
Q ss_pred CCCCcceEEEcCCCCCCCHHHHH----HHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCc
Q 016188 112 DAGPEHSIFVGDLAPDVTDYLLQ----ETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTR 187 (394)
Q Consensus 112 ~~~~~~~l~v~nlp~~~t~~~l~----~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~ 187 (394)
...++++|||+|||+++++++|+ ++| +.||.|..+.+.. +++++|||||+|.+.++|..|++.|++..+.|+
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f-~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIF-SRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 79 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHH-GGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHH-HhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCc
Confidence 34568899999999999999999 999 8999999998874 478899999999999999999999999999999
Q ss_pred ceEEeecCCCCC
Q 016188 188 PMRISAATPKKT 199 (394)
Q Consensus 188 ~l~v~~a~~~~~ 199 (394)
.|.|.++.+...
T Consensus 80 ~l~v~~a~~~~~ 91 (97)
T 1nu4_A 80 PMRIQYAKTDSD 91 (97)
T ss_dssp ECEEEECSSCCT
T ss_pred EEEEEEccCCCc
Confidence 999999987654
No 319
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.61 E-value=3.8e-15 Score=113.70 Aligned_cols=80 Identities=20% Similarity=0.429 Sum_probs=72.4
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceE
Q 016188 111 PDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190 (394)
Q Consensus 111 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~ 190 (394)
....+.++|||+|||+++++++|+++| +.||.|..+.++ +|||||+|.+.++|++|++.|++..+.|+.|.
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F-~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 96 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIF-GPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLE 96 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHH-TTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHH-HhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 345568899999999999999999999 899999999987 68999999999999999999999999999999
Q ss_pred EeecCCCCC
Q 016188 191 ISAATPKKT 199 (394)
Q Consensus 191 v~~a~~~~~ 199 (394)
|.++.+...
T Consensus 97 V~~a~~~~~ 105 (108)
T 2jvo_A 97 VVYSKLPAK 105 (108)
T ss_dssp EESCSCCC-
T ss_pred EEEecCCCC
Confidence 999977643
No 320
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.61 E-value=1.1e-15 Score=115.79 Aligned_cols=77 Identities=23% Similarity=0.459 Sum_probs=70.4
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC-----CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcc
Q 016188 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG-----RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (394)
Q Consensus 231 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 305 (394)
...++|||+|||..+++++|+++|++||.|.++.++.+ +|||||+|.+.++|.+|+. ++..++|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 34589999999999999999999999999999999874 6999999999999999988 9999999999999998
Q ss_pred cCCC
Q 016188 306 KQDV 309 (394)
Q Consensus 306 ~~~~ 309 (394)
++..
T Consensus 85 ~~~~ 88 (102)
T 2xs2_A 85 RKQN 88 (102)
T ss_dssp ECC-
T ss_pred cCcc
Confidence 6654
No 321
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.6e-15 Score=117.99 Aligned_cols=77 Identities=16% Similarity=0.217 Sum_probs=68.0
Q ss_pred cCCcceEEEcCCCCcCCHHHHHHHHhhcCCc----eEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccc
Q 016188 20 LEEVRTLWIGDLQYWFDENYLSSCFAHTGEV----VSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQ 95 (394)
Q Consensus 20 ~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v----~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~ 95 (394)
.++.++|||+|||+++++++|+++|++||.| .+|+|+.+. +|+++|||||+|.+.++|++|++. ++..|.++.+
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 4567899999999999999999999999975 689999985 899999999999999999999976 8888888654
Q ss_pred eee
Q 016188 96 NFR 98 (394)
Q Consensus 96 ~v~ 98 (394)
.|.
T Consensus 98 ~V~ 100 (123)
T 2dha_A 98 ELF 100 (123)
T ss_dssp CCE
T ss_pred EEE
Confidence 443
No 322
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4.8e-15 Score=113.56 Aligned_cols=80 Identities=23% Similarity=0.444 Sum_probs=74.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEee
Q 016188 114 GPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISA 193 (394)
Q Consensus 114 ~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~ 193 (394)
...++|||+|||+++++++|+++| +.||.|..|.++.+ +|||||+|.+.++|++|++.|++..+.|+.|.|.+
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F-~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTF-SPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHH-HHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 457899999999999999999999 89999999999875 78999999999999999999999999999999999
Q ss_pred cCCCCCc
Q 016188 194 ATPKKTT 200 (394)
Q Consensus 194 a~~~~~~ 200 (394)
+.+....
T Consensus 96 a~~~~~~ 102 (109)
T 1x4g_A 96 GKESPDM 102 (109)
T ss_dssp CCCCCSS
T ss_pred cCCCCCC
Confidence 9876543
No 323
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.4e-14 Score=108.89 Aligned_cols=80 Identities=20% Similarity=0.438 Sum_probs=71.9
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhhC--CCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcc
Q 016188 111 PDAGPEHSIFVGDLAPDVTDYLLQETFRSQY--PSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRP 188 (394)
Q Consensus 111 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~--G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~ 188 (394)
....+.++|||+|||+++++++|+++| +.| |.|..+.+. +|||||+|.+.++|..|++.|++..+.|+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F-~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEF-NNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSP 80 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHH-HTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHH-HhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 344567899999999999999999999 899 889988764 579999999999999999999999999999
Q ss_pred eEEeecCCCCC
Q 016188 189 MRISAATPKKT 199 (394)
Q Consensus 189 l~v~~a~~~~~ 199 (394)
|.|.++.++..
T Consensus 81 l~v~~a~~~~~ 91 (99)
T 2cpd_A 81 IEVTLAKPVDK 91 (99)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEECCCCCC
Confidence 99999987654
No 324
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.60 E-value=1.4e-15 Score=118.59 Aligned_cols=81 Identities=19% Similarity=0.284 Sum_probs=72.5
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCee--EEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcce
Q 016188 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVR--GAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189 (394)
Q Consensus 112 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~--~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l 189 (394)
.....++|||+|||+++++++|+++| +.| .|. .|.|+.++. |+++|||||+|.+.++|++|++ +++..+.||.|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F-~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I 113 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFF-SGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYI 113 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHT-TTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHH-hcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEE
Confidence 33457889999999999999999999 899 577 899999987 9999999999999999999996 47789999999
Q ss_pred EEeecCC
Q 016188 190 RISAATP 196 (394)
Q Consensus 190 ~v~~a~~ 196 (394)
.|..+..
T Consensus 114 ~V~~a~~ 120 (126)
T 2hgm_A 114 EVFKSSQ 120 (126)
T ss_dssp CCEEECH
T ss_pred EEEECCH
Confidence 9988754
No 325
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.39 E-value=7e-17 Score=125.38 Aligned_cols=87 Identities=28% Similarity=0.351 Sum_probs=80.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeE--------EEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeee
Q 016188 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRG--------AKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFC 184 (394)
Q Consensus 113 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~--------v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~ 184 (394)
..+.++|||+|||+++++++|+++| +.||.|.. +.++.++.+++++|||||+|.+.++|++|++.|++..+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYF-KQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 3457899999999999999999999 89999999 89999988999999999999999999999999999999
Q ss_pred cCcceEEeecCCCCCc
Q 016188 185 STRPMRISAATPKKTT 200 (394)
Q Consensus 185 ~g~~l~v~~a~~~~~~ 200 (394)
.|+.|.|.++.++...
T Consensus 83 ~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 83 SGNPIKVSFATRRADF 98 (116)
Confidence 9999999999876543
No 326
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=8.3e-15 Score=109.02 Aligned_cols=75 Identities=24% Similarity=0.337 Sum_probs=64.1
Q ss_pred CCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCcccee
Q 016188 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNF 97 (394)
Q Consensus 18 ~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v 97 (394)
......++|||+|||+++++++|+++|++||.|.+| +.++.+++ ||||+|.+.++|.+|++ |++..+.++.+.|
T Consensus 3 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V 76 (94)
T 2e5g_A 3 SGSSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRV 76 (94)
T ss_dssp SCCTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCC
T ss_pred CccCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEE
Confidence 345677899999999999999999999999999987 44443444 99999999999999999 9999999965555
Q ss_pred e
Q 016188 98 R 98 (394)
Q Consensus 98 ~ 98 (394)
.
T Consensus 77 ~ 77 (94)
T 2e5g_A 77 R 77 (94)
T ss_dssp B
T ss_pred E
Confidence 4
No 327
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.60 E-value=9e-16 Score=116.20 Aligned_cols=82 Identities=27% Similarity=0.531 Sum_probs=75.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEee
Q 016188 114 GPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISA 193 (394)
Q Consensus 114 ~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~ 193 (394)
...++|||+|||+++++++|+++| +.||.|..+.++.++ +|+++|||||+|.+.++|++|++ ++..+.|+.|.|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFF-ARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHH-GGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHH-HhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 346899999999999999999999 899999999999998 89999999999999999999997 99999999999999
Q ss_pred cCCCCC
Q 016188 194 ATPKKT 199 (394)
Q Consensus 194 a~~~~~ 199 (394)
+.++..
T Consensus 83 a~~~~~ 88 (102)
T 2xs2_A 83 AIRKQN 88 (102)
T ss_dssp EEECC-
T ss_pred CCcCcc
Confidence 876543
No 328
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.60 E-value=5.5e-15 Score=115.03 Aligned_cols=83 Identities=13% Similarity=0.280 Sum_probs=72.3
Q ss_pred CcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcce-EEEEEcCHHHHHHHHHHcCCCCCCCcccee
Q 016188 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGY-GFVEFVSHAAAERVLQTYNGTPMPGTEQNF 97 (394)
Q Consensus 19 ~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~-afV~f~~~e~A~~a~~~l~~~~~~~~~~~v 97 (394)
.+....+|||+||++.+++++|+++|++||.|.+|++.... +++ |||+|.+.++|.+|++.|||..|.+....+
T Consensus 24 ~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~L 98 (130)
T 3zzy_A 24 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTL 98 (130)
T ss_dssp -CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEE
T ss_pred CCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEE
Confidence 33455678899999999999999999999999999888753 577 999999999999999999999999877888
Q ss_pred eeecccCCC
Q 016188 98 RLNWASFGI 106 (394)
Q Consensus 98 ~~~~~~~~~ 106 (394)
++.++....
T Consensus 99 rI~~ak~~~ 107 (130)
T 3zzy_A 99 RIDFSKLTS 107 (130)
T ss_dssp EEEECSCSS
T ss_pred EEEecCCCc
Confidence 888887553
No 329
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.59 E-value=3.7e-15 Score=115.22 Aligned_cols=69 Identities=19% Similarity=0.248 Sum_probs=61.3
Q ss_pred CcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCcc
Q 016188 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTE 94 (394)
Q Consensus 19 ~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~ 94 (394)
.....++|||+|||+++++++|+++|++||.|.+|.|+.+ +||||+|.+.++|++||+.||+..|.++.
T Consensus 12 ~~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 12 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp -----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 3456789999999999999999999999999999998765 89999999999999999999999999976
No 330
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=7.8e-15 Score=108.23 Aligned_cols=79 Identities=24% Similarity=0.410 Sum_probs=72.4
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEE
Q 016188 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191 (394)
Q Consensus 112 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v 191 (394)
...+.++|||+|||+++++++|+++| +.||.|..+.+++ +||||+|.+.++|++|++.|++..+.|+.|.|
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 75 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLF-ERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 75 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHH-HHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHH-HcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34568899999999999999999999 8999999999874 39999999999999999999999999999999
Q ss_pred eecCCCCC
Q 016188 192 SAATPKKT 199 (394)
Q Consensus 192 ~~a~~~~~ 199 (394)
.++.+...
T Consensus 76 ~~a~~~~~ 83 (90)
T 2dnp_A 76 ELSTKGQK 83 (90)
T ss_dssp EESCCCCC
T ss_pred EECCCCCC
Confidence 99987644
No 331
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.59 E-value=5.5e-15 Score=123.13 Aligned_cols=82 Identities=21% Similarity=0.373 Sum_probs=74.2
Q ss_pred CcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceee
Q 016188 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFR 98 (394)
Q Consensus 19 ~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~ 98 (394)
...+.++|||+|||+++++++|+++|++||.|.+|.|..+. ++.++|||||+|.+.++|.+|++.|++..|.++.+.|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34456899999999999999999999999999999999998 89999999999999999999999999999999666555
Q ss_pred eec
Q 016188 99 LNW 101 (394)
Q Consensus 99 ~~~ 101 (394)
+..
T Consensus 163 ~a~ 165 (177)
T 2f3j_A 163 LVA 165 (177)
T ss_dssp EES
T ss_pred Eec
Confidence 543
No 332
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.59 E-value=1.4e-15 Score=131.32 Aligned_cols=79 Identities=25% Similarity=0.505 Sum_probs=72.0
Q ss_pred CCccEEEEcCCCCCC---------CHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCcee-------
Q 016188 231 ITNTTIFVGNLDPNV---------TEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMI------- 294 (394)
Q Consensus 231 ~~~~~l~v~nl~~~~---------t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~~------- 294 (394)
...++|||+||+..+ ++++|+++|++||.|.+|.|+.++|||||+|.+.++|+.|++.|+|..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e 211 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKE 211 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTT
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEecccccc
Confidence 456899999999988 7999999999999999999999999999999999999999999999999
Q ss_pred -----CcEEEEEEEcccCCC
Q 016188 295 -----GQQQVRISWGRKQDV 309 (394)
Q Consensus 295 -----~g~~l~v~~a~~~~~ 309 (394)
.|+.|.|.||+..+.
T Consensus 212 ~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 212 WDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp GGGGGGSCCCEEEECC----
T ss_pred ccccCCCCEEEEEEccCCCC
Confidence 899999999987654
No 333
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.59 E-value=5.2e-15 Score=123.32 Aligned_cols=85 Identities=28% Similarity=0.389 Sum_probs=79.1
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEE
Q 016188 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191 (394)
Q Consensus 112 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v 191 (394)
...+.++|||+|||+++++++|+++| +.||.|..|.++.++ +++++|||||+|.+.++|+.|++.+++..+.|+.|.|
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F-~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V 161 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELF-AEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 161 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHH-HHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHH-HhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34557899999999999999999999 899999999999998 8999999999999999999999999999999999999
Q ss_pred eecCCCC
Q 016188 192 SAATPKK 198 (394)
Q Consensus 192 ~~a~~~~ 198 (394)
.++....
T Consensus 162 ~~a~~~~ 168 (177)
T 2f3j_A 162 QLVASQI 168 (177)
T ss_dssp EEESSGG
T ss_pred EEecCCC
Confidence 9987643
No 334
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.59 E-value=2.2e-15 Score=112.65 Aligned_cols=82 Identities=20% Similarity=0.360 Sum_probs=73.4
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEE
Q 016188 112 DAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191 (394)
Q Consensus 112 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v 191 (394)
...+.++|||+|||+++++++|+++| +.||.|..+ ..+++++|||||+|.+.++|..|++.|++..+.|+.|.|
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F-~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 85 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVF-EDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 85 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHH-CSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHH-hhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 44567899999999999999999999 899988766 346889999999999999999999999999999999999
Q ss_pred eecCCCCC
Q 016188 192 SAATPKKT 199 (394)
Q Consensus 192 ~~a~~~~~ 199 (394)
.++.++..
T Consensus 86 ~~a~~~~~ 93 (96)
T 1fjc_A 86 YYTGEKGG 93 (96)
T ss_dssp EECSSSCC
T ss_pred EEcCCCCC
Confidence 99977643
No 335
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.59 E-value=9.2e-15 Score=109.32 Aligned_cols=77 Identities=16% Similarity=0.329 Sum_probs=70.6
Q ss_pred CCCCcceEEEcCCCC-CCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceE
Q 016188 112 DAGPEHSIFVGDLAP-DVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190 (394)
Q Consensus 112 ~~~~~~~l~v~nlp~-~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~ 190 (394)
...+.++|||+|||+ ++++++|+++| +.||.|..+.+. +|||||+|.+.++|.+|++.+++..+.|+.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F-~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIF-SPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHH-GGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHH-HhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 445688999999998 99999999999 899999999883 68999999999999999999999999999999
Q ss_pred EeecCCC
Q 016188 191 ISAATPK 197 (394)
Q Consensus 191 v~~a~~~ 197 (394)
|.++..+
T Consensus 89 V~~a~~~ 95 (97)
T 2xnq_A 89 LEVSSSN 95 (97)
T ss_dssp EEECCCC
T ss_pred EEecCCC
Confidence 9998754
No 336
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.59 E-value=2.8e-15 Score=120.86 Aligned_cols=80 Identities=20% Similarity=0.358 Sum_probs=70.4
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHhcccCCeEE--------EEEe---CCCcEEEEEeCchHHHHHHHHHhCCceeCcEE
Q 016188 230 DITNTTIFVGNLDPNVTEEELKQTFLHFGEIVN--------VKIP---MGRGCGFVQFAARASAEEAILRMQGHMIGQQQ 298 (394)
Q Consensus 230 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~--------~~i~---~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~ 298 (394)
..+.++|||+|||..+|+++|+++|++||.|.+ +.+. ..+|||||+|.+.++|.+|+..|||..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 345689999999999999999999999998865 3333 34799999999999999999999999999999
Q ss_pred EEEEEcccCCC
Q 016188 299 VRISWGRKQDV 309 (394)
Q Consensus 299 l~v~~a~~~~~ 309 (394)
|+|.++++...
T Consensus 122 l~V~~a~~~~~ 132 (143)
T 3egn_A 122 MVVQFARSARP 132 (143)
T ss_dssp CEEEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999986543
No 337
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=4e-15 Score=113.15 Aligned_cols=80 Identities=21% Similarity=0.316 Sum_probs=67.3
Q ss_pred CcCCcceEEE--cCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCC---CCc
Q 016188 19 TLEEVRTLWI--GDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPM---PGT 93 (394)
Q Consensus 19 ~~~~~~~v~V--~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~---~~~ 93 (394)
..++.++||| +||++++++++|+++|++||.|.+|.+..+ +|||||+|.+.++|++|++.|||..+ .+.
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 4566789999 779999999999999999999999987643 59999999999999999999999876 333
Q ss_pred cceeeeecccC
Q 016188 94 EQNFRLNWASF 104 (394)
Q Consensus 94 ~~~v~~~~~~~ 104 (394)
...+.+.++..
T Consensus 95 g~~l~v~~a~~ 105 (114)
T 2cq2_A 95 KITLYLNFVEK 105 (114)
T ss_dssp EEECEEEEESC
T ss_pred CcEEEEEeccc
Confidence 56666666543
No 338
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.59 E-value=9.2e-15 Score=112.17 Aligned_cols=79 Identities=28% Similarity=0.468 Sum_probs=71.8
Q ss_pred CCCCcceEEEcCCCCC-CCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceE
Q 016188 112 DAGPEHSIFVGDLAPD-VTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190 (394)
Q Consensus 112 ~~~~~~~l~v~nlp~~-~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~ 190 (394)
.....++|||+|||++ +++++|+++| +.||.|..|.+ ++|||||+|.+.++|+.|++.|++..+.|+.|.
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F-~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 93 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIF-SKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLD 93 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHH-GGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECC
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHH-HhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 3345689999999999 9999999999 89999999988 478999999999999999999999999999999
Q ss_pred EeecCCCCC
Q 016188 191 ISAATPKKT 199 (394)
Q Consensus 191 v~~a~~~~~ 199 (394)
|.++.....
T Consensus 94 V~~a~~~~~ 102 (110)
T 1wf1_A 94 INMAGEPKP 102 (110)
T ss_dssp EEESCCCCS
T ss_pred EEECCCCCC
Confidence 999975543
No 339
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.58 E-value=6.5e-15 Score=110.02 Aligned_cols=79 Identities=16% Similarity=0.345 Sum_probs=71.0
Q ss_pred CCCCcceEEEcCCCC-CCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceE
Q 016188 112 DAGPEHSIFVGDLAP-DVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190 (394)
Q Consensus 112 ~~~~~~~l~v~nlp~-~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~ 190 (394)
...+.++|||+|||+ ++++++|+++| +.||.|..+.+. +|||||+|.+.++|+.|++.|++..+.|+.|.
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F-~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 76 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIF-SPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLI 76 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHH-TTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBC
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHH-HhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 345688999999998 99999999999 899999999884 68999999999999999999999999999999
Q ss_pred EeecCCCCC
Q 016188 191 ISAATPKKT 199 (394)
Q Consensus 191 v~~a~~~~~ 199 (394)
|.++.+...
T Consensus 77 V~~a~~~~~ 85 (96)
T 2kvi_A 77 LEVSSSNAR 85 (96)
T ss_dssp EEEEECCCC
T ss_pred EEEcCcCCC
Confidence 999976654
No 340
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=6.4e-15 Score=113.09 Aligned_cols=74 Identities=9% Similarity=0.048 Sum_probs=65.5
Q ss_pred cCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeee
Q 016188 20 LEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRL 99 (394)
Q Consensus 20 ~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~ 99 (394)
.++.++|||+|||+++++++|+++|++||.|.+|.+.+ +++||||+|.+.++|.+|++.||+..+.++.+.|..
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 80 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEW 80 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34568999999999999999999999999999998875 458999999999999999999999999986554444
No 341
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=6.7e-15 Score=109.32 Aligned_cols=80 Identities=26% Similarity=0.458 Sum_probs=70.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhhCCC-eeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCC-eeecCcceE
Q 016188 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPS-VRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNG-VFCSTRPMR 190 (394)
Q Consensus 113 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~-v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~-~~~~g~~l~ 190 (394)
....++|||+|||+++++++|+++| +.||. |..+.+. ++|||||+|.+.++|++|++.|++ ..+.|+.|.
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F-~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLF-GDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHH-HHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHH-HHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 3457899999999999999999999 89999 6666553 478999999999999999999999 999999999
Q ss_pred EeecCCCCCc
Q 016188 191 ISAATPKKTT 200 (394)
Q Consensus 191 v~~a~~~~~~ 200 (394)
|.++.++...
T Consensus 77 v~~a~~~~~~ 86 (93)
T 2cqh_A 77 VDYSVSKKLR 86 (93)
T ss_dssp EEECCCCCCC
T ss_pred EEEccCcccc
Confidence 9999876543
No 342
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1.9e-14 Score=103.59 Aligned_cols=74 Identities=22% Similarity=0.260 Sum_probs=61.8
Q ss_pred cCCcce-EEEcCCCCcCCHHH----HHHHHhhc-CCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCc
Q 016188 20 LEEVRT-LWIGDLQYWFDENY----LSSCFAHT-GEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGT 93 (394)
Q Consensus 20 ~~~~~~-v~V~nLp~~~~e~~----l~~~f~~~-G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~ 93 (394)
..++.+ |||+|||..+++++ |+++|++| |+|.+| ++ |+|||.|.+.++|.+|++.|+|..+.++
T Consensus 5 ~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr 74 (96)
T 2diu_A 5 SSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGN 74 (96)
T ss_dssp CCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSS
T ss_pred CCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCc
Confidence 345666 99999999999998 55899999 499888 22 9999999999999999999999999996
Q ss_pred cceeeeeccc
Q 016188 94 EQNFRLNWAS 103 (394)
Q Consensus 94 ~~~v~~~~~~ 103 (394)
.+++......
T Consensus 75 ~i~v~~A~~~ 84 (96)
T 2diu_A 75 RIIVSFTPKN 84 (96)
T ss_dssp CCEEESSCCS
T ss_pred eEEEEecCCC
Confidence 6555554443
No 343
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=4e-15 Score=114.92 Aligned_cols=66 Identities=20% Similarity=0.403 Sum_probs=60.4
Q ss_pred CcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCC---CCCcceEEEEEcCHHHHHHHHHHc
Q 016188 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKIT---GQPEGYGFVEFVSHAAAERVLQTY 85 (394)
Q Consensus 19 ~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~---g~~~g~afV~f~~~e~A~~a~~~l 85 (394)
...+.++|||+|||+++++++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|.+|++.|
T Consensus 4 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 4 GSSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp SSSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 345679999999999999999999999999999 888887766 789999999999999999999988
No 344
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1e-14 Score=108.95 Aligned_cols=81 Identities=16% Similarity=0.262 Sum_probs=72.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEE-EEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEE
Q 016188 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGA-KVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRI 191 (394)
Q Consensus 113 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v-~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v 191 (394)
....++|||+|||+++++++|+++| +.||.|..+ .++.++.++ .|||+|.+.++|..|++.|++..+.|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F-~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 86 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLL-VQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKV 86 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHH-HHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHH-HhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3457899999999999999999999 899999999 488876544 3999999999999999999999999999999
Q ss_pred eecCCCC
Q 016188 192 SAATPKK 198 (394)
Q Consensus 192 ~~a~~~~ 198 (394)
.++.++.
T Consensus 87 ~~a~~~~ 93 (96)
T 2e44_A 87 AYIPDEM 93 (96)
T ss_dssp EECCCCC
T ss_pred EEcCccc
Confidence 9998763
No 345
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3.4e-14 Score=106.31 Aligned_cols=79 Identities=18% Similarity=0.305 Sum_probs=67.6
Q ss_pred CCCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccce
Q 016188 17 PMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQN 96 (394)
Q Consensus 17 ~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~ 96 (394)
.....+.++|||+|| ++++++|+++|++||.|.+|.+.+ +++||||+|.+.++|.+|++.|++..+.+ ..
T Consensus 9 ~~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g--~~ 78 (97)
T 1x5p_A 9 RRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP------PRNCAFVTYEKMESADQAVAELNGTQVES--VQ 78 (97)
T ss_dssp CCCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHTTTEEETT--EE
T ss_pred cCCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC------CCCEEEEEECCHHHHHHHHHHhCCCeECC--eE
Confidence 345567789999996 899999999999999999999853 56999999999999999999999999988 55
Q ss_pred eeeecccCC
Q 016188 97 FRLNWASFG 105 (394)
Q Consensus 97 v~~~~~~~~ 105 (394)
+.+.++...
T Consensus 79 l~v~~a~~~ 87 (97)
T 1x5p_A 79 LKVNIARKQ 87 (97)
T ss_dssp EEEECCSSC
T ss_pred EEEEECCCC
Confidence 666666543
No 346
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.56 E-value=9.8e-15 Score=107.15 Aligned_cols=76 Identities=16% Similarity=0.246 Sum_probs=70.0
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeec
Q 016188 115 PEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAA 194 (394)
Q Consensus 115 ~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a 194 (394)
..++|||+|||+++++++|+++| +.| .|..+.+. +++|||||+|.+.++|++|++.+++..+.|+.|.|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F-~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLL-KDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHT-CSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHH-hhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 46889999999999999999999 899 99999884 57899999999999999999999999999999999998
Q ss_pred CCCC
Q 016188 195 TPKK 198 (394)
Q Consensus 195 ~~~~ 198 (394)
....
T Consensus 76 ~~~~ 79 (88)
T 1wg1_A 76 PTDA 79 (88)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 6543
No 347
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.55 E-value=3e-14 Score=107.68 Aligned_cols=75 Identities=19% Similarity=0.230 Sum_probs=67.1
Q ss_pred CccEEEEcCCCC-----CCCHHHHHHHhcccCCeEEEEEeCC-------CcEEEEEeCchHHHHHHHHHhCCceeCcEEE
Q 016188 232 TNTTIFVGNLDP-----NVTEEELKQTFLHFGEIVNVKIPMG-------RGCGFVQFAARASAEEAILRMQGHMIGQQQV 299 (394)
Q Consensus 232 ~~~~l~v~nl~~-----~~t~~~l~~~F~~~G~i~~~~i~~~-------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l 299 (394)
++++|+|.||.. +-++++|+++|++||.|.++.|+.+ +|++||+|.+.++|.+|+..|||+.++||.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 468999999963 2378999999999999999999753 6999999999999999999999999999999
Q ss_pred EEEEccc
Q 016188 300 RISWGRK 306 (394)
Q Consensus 300 ~v~~a~~ 306 (394)
+|.++..
T Consensus 87 ~v~~a~~ 93 (105)
T 2pe8_A 87 KACFYNL 93 (105)
T ss_dssp EEEECCH
T ss_pred EEEEcCH
Confidence 9999974
No 348
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.54 E-value=5.4e-15 Score=112.70 Aligned_cols=79 Identities=13% Similarity=0.126 Sum_probs=70.4
Q ss_pred ceEEEcCC----CCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcC----HHH----HHHHHH--HcCCCC
Q 016188 24 RTLWIGDL----QYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVS----HAA----AERVLQ--TYNGTP 89 (394)
Q Consensus 24 ~~v~V~nL----p~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~----~e~----A~~a~~--~l~~~~ 89 (394)
..|||+|| |+.+++++|+++|+.||+|.+|.++.|+.||+++|||||+|.+ +++ |.+|++ .+++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 67999999 9999999999999999999999999999999999999999996 333 889988 789999
Q ss_pred CCCccceeeeecc
Q 016188 90 MPGTEQNFRLNWA 102 (394)
Q Consensus 90 ~~~~~~~v~~~~~ 102 (394)
|.|+.++|.++..
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9998877777644
No 349
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.9e-14 Score=111.11 Aligned_cols=79 Identities=16% Similarity=0.298 Sum_probs=69.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCC---CCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceE
Q 016188 114 GPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNT---GRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMR 190 (394)
Q Consensus 114 ~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~t---g~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~ 190 (394)
...++|||+|||+++++++|+++| +.||.|. +.++.+..+ |+++|||||+|.+.++|++|++.++ .++|+.+.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F-~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASF-RRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHT-TTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHH-HhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 457899999999999999999999 8999999 888888777 7999999999999999999999883 47788777
Q ss_pred EeecCC
Q 016188 191 ISAATP 196 (394)
Q Consensus 191 v~~a~~ 196 (394)
+..+..
T Consensus 82 ~~~~~~ 87 (114)
T 2dnl_A 82 CVSSPT 87 (114)
T ss_dssp EECCSS
T ss_pred eccCCC
Confidence 765543
No 350
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.54 E-value=1.6e-14 Score=105.86 Aligned_cols=72 Identities=22% Similarity=0.546 Sum_probs=64.9
Q ss_pred cCCcceEEEcCCCCcCCHHHHHHHHhhc----C-------CceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCC
Q 016188 20 LEEVRTLWIGDLQYWFDENYLSSCFAHT----G-------EVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGT 88 (394)
Q Consensus 20 ~~~~~~v~V~nLp~~~~e~~l~~~f~~~----G-------~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~ 88 (394)
.++.++|||+|||+++++++|+++|++| | .|.+|++.++ +|||||+|.+.++|.+|+ .|++.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 4678999999999999999999999999 8 8999998765 599999999999999999 99999
Q ss_pred CCCCccceee
Q 016188 89 PMPGTEQNFR 98 (394)
Q Consensus 89 ~~~~~~~~v~ 98 (394)
.+.++.+.|+
T Consensus 76 ~~~g~~l~V~ 85 (87)
T 2hzc_A 76 IFQGQSLKIR 85 (87)
T ss_dssp EETTEECEEE
T ss_pred EECCeEEEEe
Confidence 9999665543
No 351
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.53 E-value=2.8e-14 Score=115.00 Aligned_cols=83 Identities=27% Similarity=0.473 Sum_probs=73.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEE--------EEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeee
Q 016188 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGA--------KVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFC 184 (394)
Q Consensus 113 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v--------~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~ 184 (394)
..++++|||+|||+++++++|+++| +.||.|..+ .+. .+|+++|||||+|.+.++|..|++.||+..+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F-~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~ 117 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIF-GRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVL 117 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHH-GGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-HHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEe
Confidence 4567899999999999999999999 899998874 333 3689999999999999999999999999999
Q ss_pred cCcceEEeecCCCCC
Q 016188 185 STRPMRISAATPKKT 199 (394)
Q Consensus 185 ~g~~l~v~~a~~~~~ 199 (394)
.|+.|.|.++.+...
T Consensus 118 ~g~~l~V~~a~~~~~ 132 (143)
T 3egn_A 118 FGKPMVVQFARSARP 132 (143)
T ss_dssp TTEECEEEECCCSCC
T ss_pred CCcEEEEEECCCCCC
Confidence 999999999976544
No 352
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.53 E-value=3.1e-14 Score=104.48 Aligned_cols=76 Identities=28% Similarity=0.378 Sum_probs=62.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCee--ecCcceE
Q 016188 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVF--CSTRPMR 190 (394)
Q Consensus 113 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~--~~g~~l~ 190 (394)
..+..+|||+|||+++++++|+++| +.||.|.++.++.+ ++|||||+|.+.++|+. +++.. +.|+.|.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F-~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFF-CQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHH-TTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHH-hccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 3457899999999999999999999 89999999999874 78999999999999984 34444 4699999
Q ss_pred EeecCCCC
Q 016188 191 ISAATPKK 198 (394)
Q Consensus 191 v~~a~~~~ 198 (394)
|.++.++.
T Consensus 78 v~~a~~k~ 85 (89)
T 3d2w_A 78 ISNAEPKH 85 (89)
T ss_dssp EEECC---
T ss_pred EEEcCCCC
Confidence 99987654
No 353
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.53 E-value=5e-14 Score=106.47 Aligned_cols=82 Identities=13% Similarity=0.225 Sum_probs=73.2
Q ss_pred CCcceEEEcCCCC-----CCCHHHHHHHHHhhCCCeeEEEEeeCCCC-CCCccEEEEEeCCHHHHHHHHHhhCCeeecCc
Q 016188 114 GPEHSIFVGDLAP-----DVTDYLLQETFRSQYPSVRGAKVVTDPNT-GRSKGYGFVKFLDENERNRAMTEMNGVFCSTR 187 (394)
Q Consensus 114 ~~~~~l~v~nlp~-----~~t~~~l~~~f~~~~G~v~~v~i~~~~~t-g~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~ 187 (394)
.++++|+|.||.. +-++++|+++| ++||.|.++.|+.++.+ ++++|+|||+|.+.++|.+|++.|||..+.||
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f-~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEEC-EKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHG-GGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHH-HhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 4578999999963 23789999999 89999999999998764 68999999999999999999999999999999
Q ss_pred ceEEeecCC
Q 016188 188 PMRISAATP 196 (394)
Q Consensus 188 ~l~v~~a~~ 196 (394)
.|.|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999864
No 354
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.51 E-value=1.6e-13 Score=116.01 Aligned_cols=117 Identities=17% Similarity=0.259 Sum_probs=87.1
Q ss_pred CHHHHHHHHHhh--CCeeecCcceEEeecCCCCCcccccccccccccCCCCCCCCCcccCCCCCCCCccEEEEcCCCCCC
Q 016188 168 DENERNRAMTEM--NGVFCSTRPMRISAATPKKTTGFQQQYAAVKATYPVAAYTTPVQVFPADNDITNTTIFVGNLDPNV 245 (394)
Q Consensus 168 ~~e~a~~ai~~l--~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~ 245 (394)
+.+.+..|++.. ....+.+....|.+............ .......++|||+|||..+
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~---------------------~~~~~~~~~l~V~nLp~~~ 121 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDE---------------------YKNDVKNRSVYIKGFPTDA 121 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHH---------------------HHHHHHHTEEEEECCCTTC
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchh---------------------hhhccccCEEEecCCCCcC
Confidence 667888888776 55566665556655421111000000 0011234899999999999
Q ss_pred CHHHHHHHhcccCCeEEEEEeCC-----CcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEccc
Q 016188 246 TEEELKQTFLHFGEIVNVKIPMG-----RGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRK 306 (394)
Q Consensus 246 t~~~l~~~F~~~G~i~~~~i~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 306 (394)
|+++|+++|++||.|.+|.|+++ +|||||+|.+.++|.+|+..++ ..++|+.|+|.+++.
T Consensus 122 t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 122 TLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp CHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred CHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 99999999999999999999863 6999999999999999997765 599999999998764
No 355
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.9e-13 Score=105.03 Aligned_cols=79 Identities=18% Similarity=0.241 Sum_probs=69.0
Q ss_pred CCCccEEEEcCCCCCCC-----------HHHHHHHhcccCCeEEEEEeC--CCcEEEEEeCchHHHHHHHHHhCCceeCc
Q 016188 230 DITNTTIFVGNLDPNVT-----------EEELKQTFLHFGEIVNVKIPM--GRGCGFVQFAARASAEEAILRMQGHMIGQ 296 (394)
Q Consensus 230 ~~~~~~l~v~nl~~~~t-----------~~~l~~~F~~~G~i~~~~i~~--~~g~~fV~f~~~~~a~~a~~~l~g~~~~g 296 (394)
..+.++|+|.||....+ +++|+++|++||.|.++.|.. .+|||||+|.+.++|.+|+..|||..|+|
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34578999999954432 589999999999999998753 37999999999999999999999999999
Q ss_pred EEEEEEEcccCC
Q 016188 297 QQVRISWGRKQD 308 (394)
Q Consensus 297 ~~l~v~~a~~~~ 308 (394)
+.|+|.++.++.
T Consensus 92 r~l~v~~a~~~~ 103 (112)
T 2dit_A 92 RQITAQAWDGTT 103 (112)
T ss_dssp EECEEEECCSCC
T ss_pred cEEEEEEeCCCC
Confidence 999999998754
No 356
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.50 E-value=7.2e-14 Score=118.14 Aligned_cols=121 Identities=11% Similarity=0.004 Sum_probs=89.2
Q ss_pred CHHHHHHHHHHc--CCCCCCCccceeeeecccCCCCCC--CCCCCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEE
Q 016188 74 SHAAAERVLQTY--NGTPMPGTEQNFRLNWASFGIGEK--RPDAGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKV 149 (394)
Q Consensus 74 ~~e~A~~a~~~l--~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i 149 (394)
+.+.+..|++.. ....+.+....++.....+..... .......++|||+|||+++++++|+++| +.||.|..|++
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F-~~~G~v~~v~i 141 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWL-EDKGQVLNIQM 141 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHH-TTSCCEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHH-hcCCCEEEEEE
Confidence 667778888765 333444444444433111100000 0011235889999999999999999999 89999999999
Q ss_pred eeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeecCCC
Q 016188 150 VTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPK 197 (394)
Q Consensus 150 ~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a~~~ 197 (394)
+.+.. ++++|||||+|.+.++|..|+..++ ..+.|+.|.|.++..-
T Consensus 142 ~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 142 RRTLH-KAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDDY 187 (193)
T ss_dssp EECTT-CCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTTC
T ss_pred EECCC-CCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHHH
Confidence 99864 8999999999999999999996654 5899999999987654
No 357
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=6e-14 Score=102.93 Aligned_cols=79 Identities=27% Similarity=0.402 Sum_probs=67.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEee
Q 016188 114 GPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISA 193 (394)
Q Consensus 114 ~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~ 193 (394)
.++++|||+|||+++++++|+++| +.||.|.++.++.+ ++|||||+|.+.++|++++. ....+.++.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F-~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~ 74 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFF-SQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISN 74 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHS-TTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHH-HHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEe
Confidence 357899999999999999999999 89999999998764 78999999999999986543 23456999999999
Q ss_pred cCCCCCc
Q 016188 194 ATPKKTT 200 (394)
Q Consensus 194 a~~~~~~ 200 (394)
+.++...
T Consensus 75 a~~~~~~ 81 (88)
T 1wf0_A 75 AEPKHNS 81 (88)
T ss_dssp CCCCCCC
T ss_pred cCCCCCC
Confidence 8876543
No 358
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.47 E-value=2.2e-13 Score=106.01 Aligned_cols=78 Identities=18% Similarity=0.341 Sum_probs=70.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEe
Q 016188 113 AGPEHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRIS 192 (394)
Q Consensus 113 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~ 192 (394)
..+.++|||+|+ ++++++|+++| +.||.|.+|.+. +++|||||+|.+.++|+.|++.|++..+.|+.|.|.
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F-~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAF-SPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHH-STTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHH-HccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 356789999995 79999999999 899999999885 468999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 016188 193 AATPKKT 199 (394)
Q Consensus 193 ~a~~~~~ 199 (394)
++.++..
T Consensus 107 ~a~~~~~ 113 (121)
T 2bz2_A 107 IARKQPM 113 (121)
T ss_dssp ECCSSCC
T ss_pred EeCCCCC
Confidence 9987644
No 359
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.46 E-value=2.1e-13 Score=103.12 Aligned_cols=76 Identities=16% Similarity=0.296 Sum_probs=66.3
Q ss_pred CCccEEEEcCCC--CCCC--------HHHHHHHhcccCCeEEEEEeCC--------CcEEEEEeCchHHHHHHHHHhCCc
Q 016188 231 ITNTTIFVGNLD--PNVT--------EEELKQTFLHFGEIVNVKIPMG--------RGCGFVQFAARASAEEAILRMQGH 292 (394)
Q Consensus 231 ~~~~~l~v~nl~--~~~t--------~~~l~~~F~~~G~i~~~~i~~~--------~g~~fV~f~~~~~a~~a~~~l~g~ 292 (394)
.+++.|.|.|+- ..+. +++|++.|++||.|.++.|+++ +|++||+|.+.++|.+|+..|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 356889999983 3332 3789999999999999999864 699999999999999999999999
Q ss_pred eeCcEEEEEEEccc
Q 016188 293 MIGQQQVRISWGRK 306 (394)
Q Consensus 293 ~~~g~~l~v~~a~~ 306 (394)
.++||.|+|++...
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999864
No 360
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=2e-12 Score=96.30 Aligned_cols=75 Identities=21% Similarity=0.323 Sum_probs=62.8
Q ss_pred ccEEEEcCCC-------CCCCHHHHHHHhcccCCeEEEEEe-CCCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEc
Q 016188 233 NTTIFVGNLD-------PNVTEEELKQTFLHFGEIVNVKIP-MGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWG 304 (394)
Q Consensus 233 ~~~l~v~nl~-------~~~t~~~l~~~F~~~G~i~~~~i~-~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 304 (394)
..+|.|.-.. ..+++++|+++|++||.|.+|.|+ ..+|||||+|.+.++|.+|+..+++ +.|+.|+|.|+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a 87 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWL 87 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECS
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEc
Confidence 3455555433 468999999999999999999997 4589999999999999999998554 68999999999
Q ss_pred ccCCC
Q 016188 305 RKQDV 309 (394)
Q Consensus 305 ~~~~~ 309 (394)
+++..
T Consensus 88 ~~~~~ 92 (100)
T 2d9o_A 88 EGQPQ 92 (100)
T ss_dssp SCCCC
T ss_pred cCCCC
Confidence 87654
No 361
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=2.8e-12 Score=98.42 Aligned_cols=83 Identities=16% Similarity=0.236 Sum_probs=71.2
Q ss_pred CCCCcceEEEcCCCCCCC-----------HHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhC
Q 016188 112 DAGPEHSIFVGDLAPDVT-----------DYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMN 180 (394)
Q Consensus 112 ~~~~~~~l~v~nlp~~~t-----------~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~ 180 (394)
...++++|+|.||..... +++|+++| ++||.|..|.| .++ .++|||||+|.+.++|.+|++.||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f-~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVEC-SKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHG-GGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHH-HccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 445688999999954432 68999999 89999999966 553 379999999999999999999999
Q ss_pred CeeecCcceEEeecCCCCC
Q 016188 181 GVFCSTRPMRISAATPKKT 199 (394)
Q Consensus 181 ~~~~~g~~l~v~~a~~~~~ 199 (394)
+..+.|+.|.|.++.++..
T Consensus 86 g~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp TCEETTEECEEEECCSCCC
T ss_pred CCEECCcEEEEEEeCCCCC
Confidence 9999999999999977644
No 362
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.40 E-value=5.6e-13 Score=115.15 Aligned_cols=80 Identities=20% Similarity=0.364 Sum_probs=68.0
Q ss_pred cCCcceEEEcCCCCcC---------CHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCC
Q 016188 20 LEEVRTLWIGDLQYWF---------DENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPM 90 (394)
Q Consensus 20 ~~~~~~v~V~nLp~~~---------~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~ 90 (394)
..+.++|||+|||.++ +|++|+++|++||.|.+|+|+.+ +|||||+|.+.++|+.|++.|++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4567899999999998 79999999999999999999875 59999999999999999999999999
Q ss_pred CC----------ccceeeeecccCC
Q 016188 91 PG----------TEQNFRLNWASFG 105 (394)
Q Consensus 91 ~~----------~~~~v~~~~~~~~ 105 (394)
.. ....+.|.|+...
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC--
T ss_pred eccccccccccCCCCEEEEEEccCC
Confidence 21 3356677777543
No 363
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.40 E-value=6.8e-13 Score=120.88 Aligned_cols=76 Identities=14% Similarity=0.312 Sum_probs=67.7
Q ss_pred CCCccEEEEcC--CCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCcee---CcE--EEEEE
Q 016188 230 DITNTTIFVGN--LDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMI---GQQ--QVRIS 302 (394)
Q Consensus 230 ~~~~~~l~v~n--l~~~~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~~---~g~--~l~v~ 302 (394)
..++++|||+| |+..+|+++|+++|++||.|.+|.+..+||||||+|.+.++|++|++.|||+++ .|+ .|.|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~ 94 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 94 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEE
Confidence 34568999999 578999999999999999999999999999999999999999999999999987 245 57777
Q ss_pred Ecc
Q 016188 303 WGR 305 (394)
Q Consensus 303 ~a~ 305 (394)
++.
T Consensus 95 ~~~ 97 (345)
T 3tht_A 95 FVE 97 (345)
T ss_dssp ECS
T ss_pred Eee
Confidence 774
No 364
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.40 E-value=8.7e-13 Score=99.68 Aligned_cols=82 Identities=16% Similarity=0.217 Sum_probs=71.3
Q ss_pred CCcceEEEcCC--CCCCC--------HHHHHHHHHhhCCCeeEEEEeeCCCC--CCCccEEEEEeCCHHHHHHHHHhhCC
Q 016188 114 GPEHSIFVGDL--APDVT--------DYLLQETFRSQYPSVRGAKVVTDPNT--GRSKGYGFVKFLDENERNRAMTEMNG 181 (394)
Q Consensus 114 ~~~~~l~v~nl--p~~~t--------~~~l~~~f~~~~G~v~~v~i~~~~~t--g~~~g~afV~f~~~e~a~~ai~~l~~ 181 (394)
.+++.|.+.|+ |.++. +++|++.| ++||.|.++.|++++.+ ++++|++||+|.+.++|.+|++.|||
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f-~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDEC-SKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHH-HTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHH-HccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 36788999998 33333 47999999 89999999999988764 46899999999999999999999999
Q ss_pred eeecCcceEEeecCC
Q 016188 182 VFCSTRPMRISAATP 196 (394)
Q Consensus 182 ~~~~g~~l~v~~a~~ 196 (394)
..+.||.|.|.++..
T Consensus 82 ~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 82 RKFANRVVVTKYCDP 96 (105)
T ss_dssp CEETTEECEEEEECH
T ss_pred CEeCCCEEEEEEeCH
Confidence 999999999998754
No 365
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.39 E-value=1.2e-12 Score=100.79 Aligned_cols=75 Identities=20% Similarity=0.252 Sum_probs=65.9
Q ss_pred CccEEEEcCCCC--CC---CHHHHHHHhcccCCeEEEEEeCC----------CcEEEEEeCchHHHHHHHHHhCCceeCc
Q 016188 232 TNTTIFVGNLDP--NV---TEEELKQTFLHFGEIVNVKIPMG----------RGCGFVQFAARASAEEAILRMQGHMIGQ 296 (394)
Q Consensus 232 ~~~~l~v~nl~~--~~---t~~~l~~~F~~~G~i~~~~i~~~----------~g~~fV~f~~~~~a~~a~~~l~g~~~~g 296 (394)
++++|+|.|+-. .+ .++||++.|++||.|.+|.|+++ +|++||+|.+.++|.+|+..|||+.++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 458899999843 22 36899999999999999999764 3899999999999999999999999999
Q ss_pred EEEEEEEccc
Q 016188 297 QQVRISWGRK 306 (394)
Q Consensus 297 ~~l~v~~a~~ 306 (394)
|.|+|.+...
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999864
No 366
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.38 E-value=2.1e-12 Score=98.73 Aligned_cols=74 Identities=12% Similarity=0.242 Sum_probs=65.3
Q ss_pred CccEEEEcCCCCCCC----------HHHHHHHhcccCCeEEEEEeCC--CcEEEEEeCchHHHHHHHHHhCCceeCcEEE
Q 016188 232 TNTTIFVGNLDPNVT----------EEELKQTFLHFGEIVNVKIPMG--RGCGFVQFAARASAEEAILRMQGHMIGQQQV 299 (394)
Q Consensus 232 ~~~~l~v~nl~~~~t----------~~~l~~~F~~~G~i~~~~i~~~--~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l 299 (394)
++++|.|.|+-..-. ++||++.|++||.|.+|.|.++ +|++||+|.+.++|.+|+..|||+.++||.|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i 85 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMI 85 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 457888988854222 4688999999999999999876 6999999999999999999999999999999
Q ss_pred EEEEcc
Q 016188 300 RISWGR 305 (394)
Q Consensus 300 ~v~~a~ 305 (394)
+|.++.
T Consensus 86 ~v~~~~ 91 (114)
T 3s6e_A 86 TAAYVP 91 (114)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 999986
No 367
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.37 E-value=2.2e-13 Score=102.89 Aligned_cols=67 Identities=18% Similarity=0.400 Sum_probs=58.9
Q ss_pred EcCCCCCCCHHHHHHHh------------cccCCeEEEEEeCC-----CcEEEEEeCchHHHHHHHHHhCCceeCcEEEE
Q 016188 238 VGNLDPNVTEEELKQTF------------LHFGEIVNVKIPMG-----RGCGFVQFAARASAEEAILRMQGHMIGQQQVR 300 (394)
Q Consensus 238 v~nl~~~~t~~~l~~~F------------~~~G~i~~~~i~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~ 300 (394)
+.||+..+++++|+++| ++||.|.++.|+++ +|+|||+|.+.++|.+|+..|||+.++||.|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 55677777777776666 99999999999875 79999999999999999999999999999999
Q ss_pred EEEc
Q 016188 301 ISWG 304 (394)
Q Consensus 301 v~~a 304 (394)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 368
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.36 E-value=1.8e-12 Score=99.89 Aligned_cols=81 Identities=14% Similarity=0.219 Sum_probs=71.0
Q ss_pred CcceEEEcCCCC--CC---CHHHHHHHHHhhCCCeeEEEEeeCCC----CCCCccEEEEEeCCHHHHHHHHHhhCCeeec
Q 016188 115 PEHSIFVGDLAP--DV---TDYLLQETFRSQYPSVRGAKVVTDPN----TGRSKGYGFVKFLDENERNRAMTEMNGVFCS 185 (394)
Q Consensus 115 ~~~~l~v~nlp~--~~---t~~~l~~~f~~~~G~v~~v~i~~~~~----tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~ 185 (394)
++++|++.|+-. ++ .+++|++.| ++||.|.+|.|+.++. +++++|++||+|.+.++|.+|++.|||..+.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef-~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEEC-GKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHH-TTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHH-hccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 578899999842 22 368999999 8999999999998864 4578899999999999999999999999999
Q ss_pred CcceEEeecCC
Q 016188 186 TRPMRISAATP 196 (394)
Q Consensus 186 g~~l~v~~a~~ 196 (394)
||.|.|.++..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999998754
No 369
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.29 E-value=1.1e-12 Score=99.02 Aligned_cols=71 Identities=18% Similarity=0.239 Sum_probs=60.4
Q ss_pred EcCCCCcCCHHHHHHHH------------hhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccc
Q 016188 28 IGDLQYWFDENYLSSCF------------AHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQ 95 (394)
Q Consensus 28 V~nLp~~~~e~~l~~~f------------~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~ 95 (394)
+.|||+.+++++|++.| ++||.|.+|+|+++. +++++|||||+|.+.++|.+|++.|||..+.|+.+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 55677777787777666 999999999999887 57899999999999999999999999999999766
Q ss_pred eeee
Q 016188 96 NFRL 99 (394)
Q Consensus 96 ~v~~ 99 (394)
.+..
T Consensus 99 ~v~~ 102 (104)
T 1jmt_A 99 HAEL 102 (104)
T ss_dssp CEEE
T ss_pred EEEE
Confidence 5543
No 370
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=5.6e-11 Score=88.49 Aligned_cols=66 Identities=17% Similarity=0.222 Sum_probs=58.1
Q ss_pred CCCCHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeecCCCCC
Q 016188 126 PDVTDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATPKKT 199 (394)
Q Consensus 126 ~~~t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a~~~~~ 199 (394)
.++++++|+++| ++||.|.+|.|+ ++++|||||+|.+.++|+.|++.+++ +.++.|.|.++..+..
T Consensus 27 ~~~te~~L~~~F-~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLL-QKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHH-HTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHH-HhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 568999999999 899999999987 46899999999999999999987544 6899999999876654
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.25 E-value=9.7e-12 Score=113.27 Aligned_cols=78 Identities=19% Similarity=0.302 Sum_probs=65.9
Q ss_pred CcCCcceEEEcC--CCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCC---Cc
Q 016188 19 TLEEVRTLWIGD--LQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMP---GT 93 (394)
Q Consensus 19 ~~~~~~~v~V~n--Lp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~---~~ 93 (394)
++.++++|||+| |+..++|++|+++|++||.|.+|.+.. ++|||||+|.+.++|++|++.|||..+. |+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 567889999999 578999999999999999999987754 3699999999999999999999998773 34
Q ss_pred cceeeeecc
Q 016188 94 EQNFRLNWA 102 (394)
Q Consensus 94 ~~~v~~~~~ 102 (394)
.+.+.+++.
T Consensus 88 ~~~ly~~~~ 96 (345)
T 3tht_A 88 KITLYLNFV 96 (345)
T ss_dssp EEECEEEEC
T ss_pred ceEEEEEEe
Confidence 345555555
No 372
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=3.5e-11 Score=85.88 Aligned_cols=74 Identities=22% Similarity=0.368 Sum_probs=62.6
Q ss_pred CCccEEEEcCCCC----CCCH----HHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEE
Q 016188 231 ITNTTIFVGNLDP----NVTE----EELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRIS 302 (394)
Q Consensus 231 ~~~~~l~v~nl~~----~~t~----~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 302 (394)
++..+|+|.-.+. ..-+ .+|.+.|++||.|..+++..++ +||+|.+.++|.+|+. |||..++||.|+|.
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~ 81 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--MWVTFLEGSSALNVLS-LNGKELLNRTITIA 81 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--EEEEESSHHHHHHGGG-GTTCEETTEEEEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--EEEEECChHHHHHHHh-cCCeEeCCeEEEEE
Confidence 4557788876652 2222 6788999999999999999876 8999999999999998 99999999999999
Q ss_pred EcccC
Q 016188 303 WGRKQ 307 (394)
Q Consensus 303 ~a~~~ 307 (394)
++++.
T Consensus 82 lkt~d 86 (91)
T 2dnr_A 82 LKSPS 86 (91)
T ss_dssp ECCCS
T ss_pred eCCCC
Confidence 98864
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=3.2e-11 Score=92.10 Aligned_cols=75 Identities=15% Similarity=0.107 Sum_probs=68.8
Q ss_pred CCccEEEEcCCCCC-CCHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCc-hHHHHHHHHHhC--CceeCcEEEEEEEcc
Q 016188 231 ITNTTIFVGNLDPN-VTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAA-RASAEEAILRMQ--GHMIGQQQVRISWGR 305 (394)
Q Consensus 231 ~~~~~l~v~nl~~~-~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~-~~~a~~a~~~l~--g~~~~g~~l~v~~a~ 305 (394)
...+.|+|+||+.. +++++|+++|++||.|..|.+..+...|||+|.+ .++|..|+..|+ +..|+|..++++...
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~ 94 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLE 94 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECC
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECC
Confidence 45689999999999 9999999999999999999999999999999999 899999999995 678999998887654
No 374
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.17 E-value=1.1e-10 Score=89.08 Aligned_cols=78 Identities=10% Similarity=0.074 Sum_probs=65.8
Q ss_pred CcceEEEcCCCCCC----------CHHHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeee
Q 016188 115 PEHSIFVGDLAPDV----------TDYLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFC 184 (394)
Q Consensus 115 ~~~~l~v~nlp~~~----------t~~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~ 184 (394)
+++.|.+.|+-... .+++|++.| ++||.|.+|.+.++. ++|++||+|.+.++|.+|++.|||..+
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f-~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEEC-NKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHH-TTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHH-hccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 46778888874321 246899999 899999999986652 589999999999999999999999999
Q ss_pred cCcceEEeecCCC
Q 016188 185 STRPMRISAATPK 197 (394)
Q Consensus 185 ~g~~l~v~~a~~~ 197 (394)
.||.|.|.++...
T Consensus 81 ~GR~i~v~~~~~~ 93 (114)
T 3s6e_A 81 AGKMITAAYVPLP 93 (114)
T ss_dssp TTEECEEEEECHH
T ss_pred CCEEEEEEEEcHH
Confidence 9999999998543
No 375
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=3.3e-10 Score=81.15 Aligned_cols=75 Identities=29% Similarity=0.341 Sum_probs=63.6
Q ss_pred CCCCCccEEEEcCCCCC------CC---HHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCceeCcEE
Q 016188 228 DNDITNTTIFVGNLDPN------VT---EEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQ 298 (394)
Q Consensus 228 ~~~~~~~~l~v~nl~~~------~t---~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~ 298 (394)
...++..+|+|.-++.. .. -.+|.+.|.+||.|..+++..++ +||+|.+.++|.+|++ |||..++||.
T Consensus 10 ~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--~fVtF~d~~sAl~AI~-ldG~~v~Gr~ 86 (95)
T 1ufw_A 10 FQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--MLVTFADSHSALSVLD-VDGMKVKGRA 86 (95)
T ss_dssp CCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--EEEECSCSHHHHHHHH-GGGSEETTEE
T ss_pred ecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--EEEEEcChHHHHHHHh-cCCeeeCCeE
Confidence 34556788999887643 22 15688999999999999999887 9999999999999998 9999999999
Q ss_pred EEEEEcc
Q 016188 299 VRISWGR 305 (394)
Q Consensus 299 l~v~~a~ 305 (394)
|+|++..
T Consensus 87 L~V~~k~ 93 (95)
T 1ufw_A 87 VKISGPS 93 (95)
T ss_dssp EEEECCC
T ss_pred EEEeccC
Confidence 9999754
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=6e-10 Score=85.06 Aligned_cols=79 Identities=16% Similarity=0.112 Sum_probs=66.7
Q ss_pred CCCCCcCCcceEEEcCCCCc-CCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcC-HHHHHHHHHHcC--CCCC
Q 016188 15 HHPMTLEEVRTLWIGDLQYW-FDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVS-HAAAERVLQTYN--GTPM 90 (394)
Q Consensus 15 ~~~~~~~~~~~v~V~nLp~~-~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~-~e~A~~a~~~l~--~~~~ 90 (394)
+++..-...+.|+|+||+++ +++++|+++|++||.|..|.+.++. ..|||.|.+ .++|..|++.++ +..|
T Consensus 10 ~~~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~------~tgfVrf~~~~~~A~~av~~ln~~~~~i 83 (121)
T 1owx_A 10 HGSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA------KEGIILFKEKAKEALGKAKDANNGNLQL 83 (121)
T ss_dssp CCCCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC------SEEEEEESSCHHHHHHHHHHTTTSCBCT
T ss_pred cCcccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC------CEEEEEECCChHHHHHHHHHhhcCCcEE
Confidence 45666778899999999999 9999999999999999999999886 369999999 899999999995 5566
Q ss_pred CCccceeee
Q 016188 91 PGTEQNFRL 99 (394)
Q Consensus 91 ~~~~~~v~~ 99 (394)
.+...++++
T Consensus 84 ~g~~~~~ev 92 (121)
T 1owx_A 84 RNKEVTWEV 92 (121)
T ss_dssp TSSSEEEEE
T ss_pred eCcEEEEEE
Confidence 665444443
No 377
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.91 E-value=8.3e-09 Score=75.22 Aligned_cols=72 Identities=14% Similarity=0.123 Sum_probs=68.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhccc-----CCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEE
Q 016188 232 TNTTIFVGNLDPNVTEEELKQTFLHF-----GEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISW 303 (394)
Q Consensus 232 ~~~~l~v~nl~~~~t~~~l~~~F~~~-----G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 303 (394)
..++|-+-|||..+++..|+.+.+++ |.|.+|.+..|.+-|+|+|.|...|.+|..+|+|.+|.|++|+|.-
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 35788999999999999999999999 9999999999999999999999999999999999999999999863
No 378
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.83 E-value=1.2e-08 Score=72.77 Aligned_cols=74 Identities=20% Similarity=0.299 Sum_probs=61.6
Q ss_pred CCcceEEEcCCC----CCCCH----HHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeec
Q 016188 114 GPEHSIFVGDLA----PDVTD----YLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCS 185 (394)
Q Consensus 114 ~~~~~l~v~nlp----~~~t~----~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~ 185 (394)
++..+|+|.-.+ .++-. .+|.+.| +.||+|..+++..+ .+||+|.+.++|.+|++ |+|..+.
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F-~~~G~Vi~vr~~~d--------~~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQF-ASFGEVILIRFVED--------KMWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHH-HTTCCEEEEEECSS--------SEEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHH-HhCCCeEEEEEecC--------CEEEEECChHHHHHHHh-cCCeEeC
Confidence 346677776655 23333 6799999 89999999999987 38999999999999997 9999999
Q ss_pred CcceEEeecCCC
Q 016188 186 TRPMRISAATPK 197 (394)
Q Consensus 186 g~~l~v~~a~~~ 197 (394)
||.|+|..+.+.
T Consensus 75 Gr~LkV~lkt~d 86 (91)
T 2dnr_A 75 NRTITIALKSPS 86 (91)
T ss_dssp TEEEEEEECCCS
T ss_pred CeEEEEEeCCCC
Confidence 999999998754
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.74 E-value=1.3e-08 Score=88.02 Aligned_cols=61 Identities=21% Similarity=0.202 Sum_probs=56.2
Q ss_pred CHHHHHHHhcccCCeEEEEEe----------CCCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEccc
Q 016188 246 TEEELKQTFLHFGEIVNVKIP----------MGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRK 306 (394)
Q Consensus 246 t~~~l~~~F~~~G~i~~~~i~----------~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 306 (394)
.+++|++.|++||.|.++.|. +.+|++||+|.+.++|.+|+..|||+.++||.|.+.+...
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 578999999999999999997 3368999999999999999999999999999999999763
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.72 E-value=2.9e-08 Score=85.79 Aligned_cols=68 Identities=15% Similarity=0.179 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHhhCCCeeEEEEeeCC----CCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcceEEeecCC
Q 016188 128 VTDYLLQETFRSQYPSVRGAKVVTDP----NTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPMRISAATP 196 (394)
Q Consensus 128 ~t~~~l~~~f~~~~G~v~~v~i~~~~----~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l~v~~a~~ 196 (394)
-.+++|++.| ++||.|.++.+..+. .+++++|++||+|.+.++|.+|++.|+|..+.||.|.+.+...
T Consensus 141 e~~~dl~~e~-~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEEC-GKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHH-TTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHH-HccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 4678999999 899999999998554 3458999999999999999999999999999999999998753
No 381
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.61 E-value=8.1e-08 Score=68.82 Aligned_cols=72 Identities=17% Similarity=0.264 Sum_probs=61.2
Q ss_pred CCcceEEEcCCCCC-----CCH----HHHHHHHHhhCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeee
Q 016188 114 GPEHSIFVGDLAPD-----VTD----YLLQETFRSQYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFC 184 (394)
Q Consensus 114 ~~~~~l~v~nlp~~-----~t~----~~l~~~f~~~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~ 184 (394)
++..+|+|.-++.+ +-. .+|.+.| +.||+|..+++..++ +||+|.+.++|.+|++ |++..+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F-~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTL-GSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHH-HHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHH-HHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 45778999887643 222 5699999 899999999999873 9999999999999997 999999
Q ss_pred cCcceEEeecC
Q 016188 185 STRPMRISAAT 195 (394)
Q Consensus 185 ~g~~l~v~~a~ 195 (394)
.||.|+|.+..
T Consensus 83 ~Gr~L~V~~k~ 93 (95)
T 1ufw_A 83 KGRAVKISGPS 93 (95)
T ss_dssp TTEEEEEECCC
T ss_pred CCeEEEEeccC
Confidence 99999998754
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.36 E-value=3.9e-06 Score=61.29 Aligned_cols=73 Identities=19% Similarity=0.210 Sum_probs=66.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhhC-----CCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcc
Q 016188 114 GPEHSIFVGDLAPDVTDYLLQETFRSQY-----PSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRP 188 (394)
Q Consensus 114 ~~~~~l~v~nlp~~~t~~~l~~~f~~~~-----G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~ 188 (394)
...++|-+-|||..++...|+.++ +.+ |.+..+.+..|.. -|+|+|.+..+|.+|.-+|+|.+|.|++
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lv-e~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFL-QEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHH-HHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHH-hhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 347889999999999999999999 899 9999999998853 6999999999999999999999999999
Q ss_pred eEEee
Q 016188 189 MRISA 193 (394)
Q Consensus 189 l~v~~ 193 (394)
|++--
T Consensus 92 Lr~gT 96 (117)
T 2l9w_A 92 IRSGT 96 (117)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99843
No 383
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.30 E-value=7.7e-06 Score=59.64 Aligned_cols=76 Identities=11% Similarity=0.166 Sum_probs=67.3
Q ss_pred ccEEEEcCCCCCC-C----HHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccC
Q 016188 233 NTTIFVGNLDPNV-T----EEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQ 307 (394)
Q Consensus 233 ~~~l~v~nl~~~~-t----~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 307 (394)
.++|+|.||+..+ . .+.++++|..|+++......++-.-..|.|.+.++|.+|...||+..+.|+.|+|-++.+.
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~ 84 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTL 84 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCS
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCCC
Confidence 4789999998765 3 2567899999999999999998778899999999999999999999999999999999854
Q ss_pred C
Q 016188 308 D 308 (394)
Q Consensus 308 ~ 308 (394)
.
T Consensus 85 ~ 85 (104)
T 1wey_A 85 H 85 (104)
T ss_dssp S
T ss_pred C
Confidence 4
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=6.9e-06 Score=59.53 Aligned_cols=89 Identities=20% Similarity=0.269 Sum_probs=67.1
Q ss_pred CCcceEEEcCCCCcCCHHHHHHHHhh---c--CCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccc
Q 016188 21 EEVRTLWIGDLQYWFDENYLSSCFAH---T--GEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQ 95 (394)
Q Consensus 21 ~~~~~v~V~nLp~~~~e~~l~~~f~~---~--G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~ 95 (394)
.-.++|.|.|||++++++.|.-+|+. - |+|.++.... .-|+|+|.+.+.|+++++. ....|.+..+
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEE
Confidence 45688999999999999999999977 2 5687776644 4599999999999999964 3566777444
Q ss_pred eeeeecccCCCCCCCCCCCCcceEEEcCCCCCCC
Q 016188 96 NFRLNWASFGIGEKRPDAGPEHSIFVGDLAPDVT 129 (394)
Q Consensus 96 ~v~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t 129 (394)
.|.-... ....+|++.+|++.++
T Consensus 77 sV~P~~~-----------~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 77 SLRPAPP-----------RAPARLLLQGLPPGTS 99 (104)
T ss_dssp EEEECCC-----------CCCCCCCCCSCCCCCC
T ss_pred EEEcCCC-----------CCcceEeeecCCCCCC
Confidence 4433222 1257789999998764
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=2.5e-05 Score=56.65 Aligned_cols=76 Identities=18% Similarity=0.209 Sum_probs=61.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHh----hCCCeeEEEEeeCCCCCCCccEEEEEeCCHHHHHHHHHhhCCeeecCcce
Q 016188 114 GPEHSIFVGDLAPDVTDYLLQETFRS----QYPSVRGAKVVTDPNTGRSKGYGFVKFLDENERNRAMTEMNGVFCSTRPM 189 (394)
Q Consensus 114 ~~~~~l~v~nlp~~~t~~~l~~~f~~----~~G~v~~v~i~~~~~tg~~~g~afV~f~~~e~a~~ai~~l~~~~~~g~~l 189 (394)
....+|.|.|||+++.++.|.-+|++ -.|+|..+.... +-|+|+|.+.+.|++.++ ...+.+.+..|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~-k~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLA-QADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHT-CSCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhc-CCcceecCeEE
Confidence 44678999999999999999999954 247788877654 368999999999999994 44678889999
Q ss_pred EEeecCCCC
Q 016188 190 RISAATPKK 198 (394)
Q Consensus 190 ~v~~a~~~~ 198 (394)
.|....+..
T Consensus 77 sV~P~~~~~ 85 (104)
T 2dhx_A 77 SLRPAPPRA 85 (104)
T ss_dssp EEEECCCCC
T ss_pred EEEcCCCCC
Confidence 997655443
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.92 E-value=6.9e-05 Score=53.60 Aligned_cols=60 Identities=15% Similarity=0.230 Sum_probs=50.3
Q ss_pred CCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcC
Q 016188 18 MTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYN 86 (394)
Q Consensus 18 ~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~ 86 (394)
......+.++| ++|+++...||.++|+.||.| .|+++.|. .|||.|.+++.|..|++.+.
T Consensus 11 ~~p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 11 LQPKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCCCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 34445566777 999999999999999999965 58888874 89999999999999998653
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.90 E-value=3.3e-05 Score=55.44 Aligned_cols=69 Identities=10% Similarity=0.078 Sum_probs=57.7
Q ss_pred ceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCC--CcceEEEEEcCHHHHHHHHHHcCCCCCCC
Q 016188 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQ--PEGYGFVEFVSHAAAERVLQTYNGTPMPG 92 (394)
Q Consensus 24 ~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~--~~g~afV~f~~~e~A~~a~~~l~~~~~~~ 92 (394)
.+|.|++||+.+||+++.+.+.....+....++..+.+.+ ...-|||.|.+.+++....+.++|..+..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 5799999999999999999999998877777776664432 33559999999999999999999987754
No 388
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.59 E-value=0.00018 Score=52.44 Aligned_cols=71 Identities=11% Similarity=0.033 Sum_probs=58.4
Q ss_pred cceEEEcCCCCcC-C----HHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCcccee
Q 016188 23 VRTLWIGDLQYWF-D----ENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNF 97 (394)
Q Consensus 23 ~~~v~V~nLp~~~-~----e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v 97 (394)
..+|+|.||+.++ . .+.++++|..|+++......++- +=..|.|.+.++|.+|...|++..+.|..+++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 3679999999876 3 25678999999998888777765 45799999999999999999999999965444
Q ss_pred ee
Q 016188 98 RL 99 (394)
Q Consensus 98 ~~ 99 (394)
..
T Consensus 79 YF 80 (104)
T 1wey_A 79 YF 80 (104)
T ss_dssp EC
T ss_pred Ee
Confidence 43
No 389
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.49 E-value=0.00079 Score=48.20 Aligned_cols=74 Identities=14% Similarity=0.201 Sum_probs=59.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC--------CcEEEEEeCchHHHHHHHHHhCCceeCcE-----EEE
Q 016188 234 TTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG--------RGCGFVQFAARASAEEAILRMQGHMIGQQ-----QVR 300 (394)
Q Consensus 234 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~--------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~-----~l~ 300 (394)
++|.|++||+.+|++++.+.+.....+........ -.-|+|.|.+.+++..-.+.++|+.+-+. +..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 57899999999999999999999988777666543 26899999999999999999999986332 345
Q ss_pred EEEcccC
Q 016188 301 ISWGRKQ 307 (394)
Q Consensus 301 v~~a~~~ 307 (394)
|++|--+
T Consensus 82 VE~AP~q 88 (91)
T 1uw4_A 82 VEFAPFQ 88 (91)
T ss_dssp EEECSSC
T ss_pred EEEcCCC
Confidence 6666443
No 390
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.38 E-value=0.0007 Score=50.80 Aligned_cols=73 Identities=12% Similarity=0.220 Sum_probs=61.7
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCceeCc-EEEEEEEcc
Q 016188 231 ITNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQ-QQVRISWGR 305 (394)
Q Consensus 231 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g-~~l~v~~a~ 305 (394)
...+.|.|.+.|+.. ...|..+|++||.|.+...........|+|++..+|++||. .||..|+| -.|-|....
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECC
Confidence 346889999999885 67788899999999999987678899999999999999965 59999985 677777643
No 391
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.29 E-value=0.00028 Score=50.64 Aligned_cols=55 Identities=16% Similarity=0.235 Sum_probs=47.5
Q ss_pred cceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcC
Q 016188 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYN 86 (394)
Q Consensus 23 ~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~ 86 (394)
.+.++| ++|+++...||.++|+.||. ..|.++.|. .|||.|.+++.|..|+..+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 345666 99999999999999999995 468888874 89999999999999998765
No 392
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.28 E-value=0.00018 Score=51.81 Aligned_cols=71 Identities=7% Similarity=0.021 Sum_probs=51.4
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCC--CcceEEEEEcCHHHHHHHHHHcCCCCCCC
Q 016188 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQ--PEGYGFVEFVSHAAAERVLQTYNGTPMPG 92 (394)
Q Consensus 22 ~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~--~~g~afV~f~~~e~A~~a~~~l~~~~~~~ 92 (394)
-+-+|.|+.||+.+||+++.+.+..+-.+....++..+.+-+ ...-|||.|.+.++.....+..+|..+..
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 346799999999999999888887664443333333222211 22458999999999999999999977643
No 393
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.16 E-value=0.0022 Score=45.92 Aligned_cols=56 Identities=20% Similarity=0.269 Sum_probs=45.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhC
Q 016188 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQ 290 (394)
Q Consensus 232 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~ 290 (394)
..+.++| +.|..+...||.++|++||.|.--.| +-..|||.|.+++.|..|+..+.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wi--dDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWI--DDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEE--ETTEEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCEEEEEE--cCCeEEEEecCHHHHHHHHHhcc
Confidence 4466777 99999999999999999995542223 25799999999999999988763
No 394
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.95 E-value=0.0025 Score=47.80 Aligned_cols=66 Identities=12% Similarity=0.146 Sum_probs=53.5
Q ss_pred CcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCC
Q 016188 19 TLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPG 92 (394)
Q Consensus 19 ~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~ 92 (394)
...+.+-|-|-+.|+.. ...|...|++||.|++..... ...+..|.|.+..+|++||.. ||..+.+
T Consensus 20 ~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~k-NG~ii~g 85 (119)
T 1wwh_A 20 DHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALSK-DGRIFGE 85 (119)
T ss_dssp -CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHTT-TTCEETT
T ss_pred CCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHHh-CCeEecC
Confidence 34456789999999985 666899999999998887621 347899999999999999964 8888864
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.91 E-value=0.0015 Score=46.93 Aligned_cols=54 Identities=20% Similarity=0.263 Sum_probs=44.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhC
Q 016188 234 TTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQ 290 (394)
Q Consensus 234 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~ 290 (394)
+.++| +.|..+...||.++|++||.|.--.| +-..|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~I~Wi--dDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWI--DDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEEEEEE--ETTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEEEEEE--cCCeEEEEecCHHHHHHHHHhcc
Confidence 55667 99999999999999999994332222 35799999999999999998774
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.65 E-value=0.0041 Score=44.75 Aligned_cols=73 Identities=11% Similarity=0.175 Sum_probs=55.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCC--------CcEEEEEeCchHHHHHHHHHhCCceeCcE-----EE
Q 016188 233 NTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMG--------RGCGFVQFAARASAEEAILRMQGHMIGQQ-----QV 299 (394)
Q Consensus 233 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~--------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~-----~l 299 (394)
.-+|.|+.||+.+|++++.+.+...-.+........ -.-|+|.|.+.++...-.+.++|+.+-+. +.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 467899999999999999888877655543333322 25789999999999999999999986332 45
Q ss_pred EEEEcc
Q 016188 300 RISWGR 305 (394)
Q Consensus 300 ~v~~a~ 305 (394)
.|++|-
T Consensus 89 ~VE~AP 94 (97)
T 2l08_A 89 VVEFAP 94 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 566654
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.33 E-value=0.0046 Score=47.00 Aligned_cols=71 Identities=17% Similarity=0.227 Sum_probs=54.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhcccCCeEE-EEEeC-------------------CCcEEEEEeCchHHHHHHHHHhCCc
Q 016188 233 NTTIFVGNLDPNVTEEELKQTFLHFGEIVN-VKIPM-------------------GRGCGFVQFAARASAEEAILRMQGH 292 (394)
Q Consensus 233 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~-~~i~~-------------------~~g~~fV~f~~~~~a~~a~~~l~g~ 292 (394)
...|.|-+.|+.. ...+-++|++||.|.+ +.+.+ ......|+|++..+|.+|| ..||.
T Consensus 7 e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGA 84 (132)
T ss_dssp -CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTC
T ss_pred ceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCe
Confidence 3668888998766 5567788999999977 22211 2457789999999999995 56999
Q ss_pred eeCcEEEEEEEcc
Q 016188 293 MIGQQQVRISWGR 305 (394)
Q Consensus 293 ~~~g~~l~v~~a~ 305 (394)
.|+|..|-|...+
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9999988887765
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.26 E-value=0.0022 Score=60.45 Aligned_cols=56 Identities=18% Similarity=0.173 Sum_probs=43.4
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHH
Q 016188 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQ 83 (394)
Q Consensus 22 ~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~ 83 (394)
..|+|+|. .|..+++.+|.++|++||+|.++.+..+. .-||.|+|.+++++..++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 44899997 79999999999999999999999887754 3799999999999997764
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.07 E-value=0.0035 Score=59.05 Aligned_cols=55 Identities=18% Similarity=0.249 Sum_probs=43.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCc-EEEEEeCchHHHHHHHHH
Q 016188 233 NTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRG-CGFVQFAARASAEEAILR 288 (394)
Q Consensus 233 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~g-~~fV~f~~~~~a~~a~~~ 288 (394)
.++|+|. .+..+++.+|.++|++||+|.++.+.+++| |+.|+|.+.+++..++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence 3789997 788999999999999999999999998876 999999999998876543
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.69 E-value=0.057 Score=41.04 Aligned_cols=77 Identities=12% Similarity=0.136 Sum_probs=54.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhhCCCeeEEE-EeeC--------CCCC-----CCccEEEEEeCCHHHHHHHHHhhCC
Q 016188 116 EHSIFVGDLAPDVTDYLLQETFRSQYPSVRGAK-VVTD--------PNTG-----RSKGYGFVKFLDENERNRAMTEMNG 181 (394)
Q Consensus 116 ~~~l~v~nlp~~~t~~~l~~~f~~~~G~v~~v~-i~~~--------~~tg-----~~~g~afV~f~~~e~a~~ai~~l~~ 181 (394)
..-|.|-+.|++ ....+.+.| ++||.|.+-. +... +.+. ....+..|+|.+..+|.+|+ ..||
T Consensus 7 e~~VtVFGFp~~-~~~~VI~~F-s~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG 83 (132)
T 3p3d_A 7 ELAILVFGYPET-MANQVIAYF-QEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENG 83 (132)
T ss_dssp -CEEEEECCCGG-GHHHHHHHH-GGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTT
T ss_pred ceEEEEEecCHH-HHHHHHHHH-HhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCC
Confidence 445788888776 455777889 8999987621 1110 0000 12457899999999999999 6899
Q ss_pred eeecCcceEEeecC
Q 016188 182 VFCSTRPMRISAAT 195 (394)
Q Consensus 182 ~~~~g~~l~v~~a~ 195 (394)
..+.|..|-|....
T Consensus 84 ~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 84 AVFNGVLLGVIPYT 97 (132)
T ss_dssp CEETTEECEEEECC
T ss_pred eEeCcEEEEEEECC
Confidence 99999888887764
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=91.54 E-value=0.61 Score=44.76 Aligned_cols=57 Identities=16% Similarity=0.195 Sum_probs=47.4
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCC
Q 016188 22 EVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNG 87 (394)
Q Consensus 22 ~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~ 87 (394)
....++|+ +|+.+...+|.++|+.||.+ +|.++.+ ..|||.|.+.+.|..+++.+..
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 44567776 99999999999999999964 5766655 4799999999999999998753
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=86.88 E-value=2.1 Score=41.04 Aligned_cols=56 Identities=18% Similarity=0.315 Sum_probs=45.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhC
Q 016188 232 TNTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQ 290 (394)
Q Consensus 232 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~ 290 (394)
....++|+ +|..+...+|.+.|+.||.| +|.- .+...|||.|.+.+.|..++..++
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~w-iddt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISW-IDDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEE-CSSSEEEEECSCHHHHHHHHHHHT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEE-EcCCeEEEEECCHHHHHHHHHHHH
Confidence 35666776 88899999999999999954 3332 356789999999999999999885
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=70.42 E-value=24 Score=24.40 Aligned_cols=68 Identities=19% Similarity=0.218 Sum_probs=51.6
Q ss_pred ccEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCc-------eeCcEEEEEE
Q 016188 233 NTTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGH-------MIGQQQVRIS 302 (394)
Q Consensus 233 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~-------~~~g~~l~v~ 302 (394)
.|.|.|-|+|..+-..++--.....|---.+... .|.|.|.|.+.++..-|+..|-++ +|.|..+.|-
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyi--dgqamirfqnsdeqrlaiqkllnhnnnklqieirgqicdvi 86 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQICDVI 86 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEEEEEE
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcceeeeee
Confidence 4778899999988887777666667766666655 589999999999999999877322 3667666654
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=65.65 E-value=30 Score=23.86 Aligned_cols=63 Identities=11% Similarity=0.068 Sum_probs=48.9
Q ss_pred CCCcCCcceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCC
Q 016188 17 PMTLEEVRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNG 87 (394)
Q Consensus 17 ~~~~~~~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~ 87 (394)
-.+....|-|.|-|+|..+-..++.-.....|--.-|..+. |.|.+.|.+-++-..|++.|-+
T Consensus 6 hhsikqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 6 HHSIKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp ----CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHEE
T ss_pred cchhhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHHh
Confidence 34667788999999999999999998888888654554433 5699999999999999987643
No 405
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=59.81 E-value=8.9 Score=25.71 Aligned_cols=59 Identities=10% Similarity=0.228 Sum_probs=38.8
Q ss_pred CCCHHHHHHHhcccC-----CeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcc
Q 016188 244 NVTEEELKQTFLHFG-----EIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGR 305 (394)
Q Consensus 244 ~~t~~~l~~~F~~~G-----~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 305 (394)
.+...+|..++..-+ .|-.|.|. ..+.||+-.. +.+..++..|++..+.|+.+.|+.++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~--d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIM--DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEEC--SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEe--CCcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 445566666665443 45666775 4588888875 55788899999999999999998764
No 406
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=40.27 E-value=71 Score=20.44 Aligned_cols=55 Identities=7% Similarity=-0.042 Sum_probs=43.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHh
Q 016188 234 TTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRM 289 (394)
Q Consensus 234 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l 289 (394)
.++.|.++.=.-=...|...+.. ..|..+.+....+.+.|+|.+.++...+++.+
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEECCHHHHHHHHHHc
Confidence 56788888765567888899998 88999999888888999998666666666653
No 407
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=37.05 E-value=22 Score=25.56 Aligned_cols=48 Identities=13% Similarity=0.166 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHhhCCCeeEEEEeeC----CCCCCCccEEEEEeCCHHHHHH
Q 016188 126 PDVTDYLLQETFRSQYPSVRGAKVVTD----PNTGRSKGYGFVKFLDENERNR 174 (394)
Q Consensus 126 ~~~t~~~l~~~f~~~~G~v~~v~i~~~----~~tg~~~g~afV~f~~~e~a~~ 174 (394)
...+..+|++.+...|+.-.++.++.. --.|++.|||.| |.+.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk 79 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQ 79 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 566788999988777766333333222 222456666655 555555443
No 408
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=36.88 E-value=24 Score=25.62 Aligned_cols=47 Identities=15% Similarity=0.181 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHHHhhCCCeeEEEEeeC--CC--CCCCccEEEEEeCCHHHHH
Q 016188 126 PDVTDYLLQETFRSQYPSVRGAKVVTD--PN--TGRSKGYGFVKFLDENERN 173 (394)
Q Consensus 126 ~~~t~~~l~~~f~~~~G~v~~v~i~~~--~~--tg~~~g~afV~f~~~e~a~ 173 (394)
...+..+|++.+...|+.-.++.++.. .. .|++.|||.| |.+.+.|.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~ak 87 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRML 87 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHH
Confidence 456788888888777766333333322 12 2466777755 56666554
No 409
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=33.55 E-value=72 Score=25.29 Aligned_cols=48 Identities=13% Similarity=0.057 Sum_probs=35.1
Q ss_pred eEEEcCCCCc---------CCHHHHHHHH--hhcCCceEEEEeecCCCCCCcceEEEEEcCH
Q 016188 25 TLWIGDLQYW---------FDENYLSSCF--AHTGEVVSIKIIRNKITGQPEGYGFVEFVSH 75 (394)
Q Consensus 25 ~v~V~nLp~~---------~~e~~l~~~f--~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~ 75 (394)
.+.|-|+|.. .+..+|++.| ..|.++ .|+...+. .-+.|++.|+|.+-
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~-kv~~l~~~--~Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPT-RVRPLWNY--LGHSGTAIVEFNKD 72 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCS-EEEEEECS--SBEEEEEEEECCSS
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCc-eeEecccC--CCCceeEEEEecCC
Confidence 4667788872 3457899977 999885 57777765 23678999999764
No 410
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=32.97 E-value=22 Score=25.38 Aligned_cols=52 Identities=10% Similarity=0.122 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHHhhCCCeeEEEEeeCCCC--CCCccEEEEEeCCHHHHHHHHH
Q 016188 126 PDVTDYLLQETFRSQYPSVRGAKVVTDPNT--GRSKGYGFVKFLDENERNRAMT 177 (394)
Q Consensus 126 ~~~t~~~l~~~f~~~~G~v~~v~i~~~~~t--g~~~g~afV~f~~~e~a~~ai~ 177 (394)
...+..+|++.+...|+.-.++.++..-.| |..+..+|+.-.+..++.+-++
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~IYds~e~~kk~E 82 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKIYADKPSAMLYE 82 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEEESHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEEECCHHHHHhhC
Confidence 356778888888776765445555544333 4333334444455555544443
No 411
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=32.17 E-value=22 Score=25.54 Aligned_cols=47 Identities=13% Similarity=0.078 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHHHhhCCCeeEEEEe----eCCCCCCCccEEEEEeCCHHHHH
Q 016188 126 PDVTDYLLQETFRSQYPSVRGAKVV----TDPNTGRSKGYGFVKFLDENERN 173 (394)
Q Consensus 126 ~~~t~~~l~~~f~~~~G~v~~v~i~----~~~~tg~~~g~afV~f~~~e~a~ 173 (394)
...+..+|++.+...|+.-.++.++ +.--.|++.|||.| |.+.+.|.
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~ak 78 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMA 78 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHH
Confidence 5667888888886666653322222 22223466666655 55555553
No 412
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=28.31 E-value=48 Score=25.54 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHHHhhCCCeeEEEEeeCCC----CCCCccEEEEEeCCHHHHH
Q 016188 126 PDVTDYLLQETFRSQYPSVRGAKVVTDPN----TGRSKGYGFVKFLDENERN 173 (394)
Q Consensus 126 ~~~t~~~l~~~f~~~~G~v~~v~i~~~~~----tg~~~g~afV~f~~~e~a~ 173 (394)
..++..+|++.+...|+.-.++.++..-. .|++.|||.| |.+.+.|.
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aK 81 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLL 81 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHH
Confidence 45678889988866676633433333322 2456666665 55655554
No 413
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=27.78 E-value=12 Score=29.04 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=18.6
Q ss_pred HHHHHHhcccCCeEEEEEeCCCcEEEEEeC
Q 016188 248 EELKQTFLHFGEIVNVKIPMGRGCGFVQFA 277 (394)
Q Consensus 248 ~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~ 277 (394)
+|+.++|...|.|..+.. .+||+||+-+
T Consensus 2 ~~~~~l~~~~G~Vkwfn~--~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV--RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET--TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC--CCCeeEEeeC
Confidence 456677888888876554 4899999976
No 414
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=27.56 E-value=1.7e+02 Score=20.81 Aligned_cols=68 Identities=12% Similarity=0.211 Sum_probs=49.1
Q ss_pred EcCCCCCCCHHHHHHHh-cccCCeEEEEEeCCCcEEEEEeCchHHHHHHHHHhCCceeCcEEEEEEEcccCC
Q 016188 238 VGNLDPNVTEEELKQTF-LHFGEIVNVKIPMGRGCGFVQFAARASAEEAILRMQGHMIGQQQVRISWGRKQD 308 (394)
Q Consensus 238 v~nl~~~~t~~~l~~~F-~~~G~i~~~~i~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 308 (394)
|--++..+..++|.... +.||.-.++... ..-..|-..+.++..+|++.|+ ....-+.|+|-+..++.
T Consensus 21 Ii~f~RPv~f~eL~~Kv~~~fGq~ldL~y~--n~EllIpl~sQeDLDkaIellD-rss~~kSLrIlL~~~~~ 89 (103)
T 2cu1_A 21 ILQFPRPVKLEDLRSKAKIAFGQSMDLHYT--NNELVIPLTTQDDLDKAVELLD-RSIHMKSLKILLVINGS 89 (103)
T ss_dssp EEEEESSCCHHHHHHHHHHHHSSCEEEEEC--SSSSCEECCSHHHHHHHHHHHH-HCSSCCSEEEEEEECCC
T ss_pred EEeccCCccHHHHHHHHHHHhCCeeeEEEe--cceEEEeccCHHHHHHHHHHHc-cCCcccceEEEEecCCC
Confidence 33467788888888765 568887777766 4567889999999999999887 44445556665555543
No 415
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=27.16 E-value=44 Score=25.30 Aligned_cols=47 Identities=26% Similarity=0.391 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHhhCCCeeEEEEeeC----CCCCCCccEEEEEeCCHHHHH
Q 016188 126 PDVTDYLLQETFRSQYPSVRGAKVVTD----PNTGRSKGYGFVKFLDENERN 173 (394)
Q Consensus 126 ~~~t~~~l~~~f~~~~G~v~~v~i~~~----~~tg~~~g~afV~f~~~e~a~ 173 (394)
..++..+|++.+...|+.-.++.++.. --.|++.|||.| |.+.+.|.
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~ak 83 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAK 83 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHH
Confidence 457889999999777776333333322 122456666665 55655554
No 416
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=24.46 E-value=1.4e+02 Score=18.91 Aligned_cols=55 Identities=9% Similarity=-0.073 Sum_probs=41.8
Q ss_pred cceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHH
Q 016188 23 VRTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQT 84 (394)
Q Consensus 23 ~~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~ 84 (394)
..++.|.++.-.--...|++.+.. ..|..+.+-.. .+-+.|.|.+.++...+++.
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHH
Confidence 357899999887778889999998 77887776443 25678888867777777765
No 417
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=24.33 E-value=1.3e+02 Score=18.55 Aligned_cols=46 Identities=4% Similarity=0.160 Sum_probs=35.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhcccCCeEEEEEeCCCcEEEEEeCch
Q 016188 234 TTIFVGNLDPNVTEEELKQTFLHFGEIVNVKIPMGRGCGFVQFAAR 279 (394)
Q Consensus 234 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~~~g~~fV~f~~~ 279 (394)
.++.|.++.-.--...+...+.....|.++.+....+.+.|+|.+.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~ 49 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGE 49 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTT
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCC
Confidence 3566777765445677888899888899999988888999998543
No 418
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=23.92 E-value=25 Score=18.74 Aligned_cols=19 Identities=32% Similarity=0.636 Sum_probs=12.3
Q ss_pred CcceEEEcCCCCcCCHHHHHHHHh
Q 016188 22 EVRTLWIGDLQYWFDENYLSSCFA 45 (394)
Q Consensus 22 ~~~~v~V~nLp~~~~e~~l~~~f~ 45 (394)
.-|+|||++ +.++|+++-+
T Consensus 4 qvrtiwvgg-----tpeelkklke 22 (36)
T 2ki0_A 4 QVRTIWVGG-----TPEELKKLKE 22 (36)
T ss_dssp SCCCCCBCC-----CHHHHHHHHH
T ss_pred eeEEEEecC-----CHHHHHHHHH
Confidence 457899988 4556665543
No 419
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=23.29 E-value=2e+02 Score=20.36 Aligned_cols=65 Identities=8% Similarity=0.031 Sum_probs=44.1
Q ss_pred CCCCcCCHHHHHHHH-hhcCCceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCCCCCCCccceeeeeccc
Q 016188 30 DLQYWFDENYLSSCF-AHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTPMPGTEQNFRLNWAS 103 (394)
Q Consensus 30 nLp~~~~e~~l~~~f-~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~~~~~~~~~~v~~~~~~ 103 (394)
.++..+.-+||.... +.||.-.++....+ -..|--.+.+|..+|++.|+...-. +.++|.+....
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~--------EllIpl~sQeDLDkaIellDrss~~-kSLrIlL~~~~ 88 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRSIHM-KSLKILLVING 88 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEECSS--------SSCEECCSHHHHHHHHHHHHHCSSC-CSEEEEEEECC
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEecc--------eEEEeccCHHHHHHHHHHHccCCcc-cceEEEEecCC
Confidence 456677888887655 66787666665532 3789999999999999988765332 22455444443
No 420
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=22.33 E-value=2e+02 Score=19.88 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=20.2
Q ss_pred CccEEEEEeCCHHHHHHHHHhhCC
Q 016188 158 SKGYGFVKFLDENERNRAMTEMNG 181 (394)
Q Consensus 158 ~~g~afV~f~~~e~a~~ai~~l~~ 181 (394)
..||.||++...++...+++...+
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTTCTT
T ss_pred cCCEEEEEEecchhHHHHHHCCCC
Confidence 789999999999998888865544
No 421
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=20.19 E-value=1.1e+02 Score=22.07 Aligned_cols=34 Identities=15% Similarity=0.296 Sum_probs=26.1
Q ss_pred CceEEEEeecCCCCCCcceEEEEEcCHHHHHHHHHHcCC
Q 016188 49 EVVSIKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNG 87 (394)
Q Consensus 49 ~v~~v~i~~~~~~g~~~g~afV~f~~~e~A~~a~~~l~~ 87 (394)
.|.+|....+ -+||-|||=.+..++..|++.+.+
T Consensus 40 ~I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~gi~~ 73 (106)
T 3h7h_B 40 QIKSVVAPEH-----VKGYIYVEAYKQTHVKQAIEGVGN 73 (106)
T ss_dssp CCCEEEECTT-----CCSEEEEEESSHHHHHHHHTTCGG
T ss_pred ceEEEEecCC-----CceEEEEEeCCHHHHHHHHhcccc
Confidence 3777744333 489999999999999999976544
No 422
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=25.35 E-value=22 Score=25.78 Aligned_cols=60 Identities=15% Similarity=0.114 Sum_probs=38.1
Q ss_pred ceEEEcCCCCcCCHHHHHHHHhhcCCceEEEEeecCCCCCCc-ceEEEEEcCHHHHHHHHHHcCC
Q 016188 24 RTLWIGDLQYWFDENYLSSCFAHTGEVVSIKIIRNKITGQPE-GYGFVEFVSHAAAERVLQTYNG 87 (394)
Q Consensus 24 ~~v~V~nLp~~~~e~~l~~~f~~~G~v~~v~i~~~~~~g~~~-g~afV~f~~~e~A~~a~~~l~~ 87 (394)
.+|-|... .++++|..+..+.+ +..+.+.+...+|+.- .--|=.|.+.++|..|++.|..
T Consensus 26 YTLQL~a~---~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~ 86 (106)
T 2lfv_A 26 YTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPA 86 (106)
Confidence 44544433 45677888887776 4567776654444322 1123578999999999988754
Done!