BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016189
(393 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O74462|TAF6_SCHPO Transcription initiation factor TFIID subunit 6
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=taf6 PE=1 SV=1
Length = 452
Score = 321 bits (823), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 174/391 (44%), Positives = 254/391 (64%), Gaps = 32/391 (8%)
Query: 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66
E+I+ +A+ +G+ NL+ + A A+A D+EYR+ +++QEA K M H+ RTVLT+ D+ SAL
Sbjct: 9 ESIKDVAEMLGIGNLADEPAAAIAMDLEYRIHQVVQEATKFMVHSKRTVLTSADISSALR 68
Query: 67 LRNVEPIYGFASGDSLRFKRAS---GLKDLYYIDDKDVELRNVIETPLPKAPLDTSVAVH 123
NVEP+YGF + L F A+ G LYY+DD++V+ +I PLPK P + S + H
Sbjct: 69 TLNVEPLYGFNNSRPLEFHEAAVGAGQNSLYYLDDEEVDFEKIINAPLPKVPRNISYSAH 128
Query: 124 WLAIEGVQPAIPEN-APVD------------AVSDGRRSEYRE--DGIS----VDIRLPV 164
WLAIEGVQPAIP+N P D V G + +E +G++ V+I+ V
Sbjct: 129 WLAIEGVQPAIPQNPTPSDHTVGEWASKGTSGVMPGASTAAKEARNGVTSMDNVEIKPLV 188
Query: 165 KHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSL 224
+HVLSKELQLYF++I + +N + AL SL D GLH L+PYF F+S+ VTR+L
Sbjct: 189 RHVLSKELQLYFERITSALLDETNVELRDAALSSLRDDPGLHQLLPYFIMFLSDSVTRNL 248
Query: 225 KNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDN-HWDLRNFV 283
N +L LM +A +LL NP++ +EPY+ Q+MPS++TCLV+KRLG+ +++ H+ LR+
Sbjct: 249 GNLVVLTTLMHMAWALLDNPNLFVEPYVQQLMPSILTCLVAKRLGSDPNNHEHYALRDLA 308
Query: 284 ADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLIL 343
A L+ +C RFG+VY L+ RVTRT L AFLD TK S HYGAI+GL +G + +L++
Sbjct: 309 AFLLGIVCDRFGNVYYTLKPRVTRTALKAFLDNTKPYSTHYGAIKGLKTMGKEAIRVLVV 368
Query: 344 PNLELYLKFLEPEMLLEK---QKNEMKRHEA 371
PN+++Y E+L+ K + NE + +EA
Sbjct: 369 PNIKVY------EVLVRKTLEKGNEEEIYEA 393
>sp|Q91857|TAF6_XENLA Transcription initiation factor TFIID subunit 6 OS=Xenopus laevis
GN=taf6 PE=2 SV=3
Length = 618
Score = 279 bits (713), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 149/381 (39%), Positives = 229/381 (60%), Gaps = 37/381 (9%)
Query: 2 SIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDV 61
+++P E+++VI++S+G+ +S + LA +V +R++E+ Q+A+K M R LT +D+
Sbjct: 10 TLLPSESMKVISESVGISQMSEETCQLLAQEVSFRIKEVTQDALKFMHVGKRQKLTPSDI 69
Query: 62 DSALNLRNVEPIYGFASGDSLRFKRASGL-KDLYYIDDKDVELRNVIETPLPKAPLDTSV 120
D+AL L+NVEPIYGF + L F+ ASG ++L++ ++K+ +L ++I TPLP+ PLD S+
Sbjct: 70 DAALKLKNVEPIYGFHPKEFLPFRYASGGGRELHFYEEKETDLSDIISTPLPRVPLDVSL 129
Query: 121 AVHWLAIEGVQPAIPENAPV-----------------------------DAVSDGRRSEY 151
HWL+IEGVQPAIPEN P +G+ E
Sbjct: 130 KAHWLSIEGVQPAIPENPPPVPKEQQKTEATEPLKVAKPGQEEGLPGKGQGSGEGKGKEK 189
Query: 152 RE---DGISVDIRLPVKHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPL 208
+ +G + ++ H LS E QLY+ +I E V S +AL S+A D GL+ +
Sbjct: 190 KTAILEGAPLKLKPRSIHELSVEQQLYYKEITEACVG-SCEAKRAEALQSIATDPGLYQM 248
Query: 209 VPYFTYFISEEVTRSL--KNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSK 266
+P F+ FISE V ++ N +LL LMR+ ++L+ NP +++E YLH+++P+V+TC+VS+
Sbjct: 249 LPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEKYLHELIPAVMTCIVSR 308
Query: 267 RLGNRFS-DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYG 325
+L R DNHW LR+F A LIA IC F N+QSR+T+T ++D + YG
Sbjct: 309 QLCLRPDVDNHWALRDFAARLIAQICKNFSTTTNNIQSRITKTFTKTWVDDRTPWTTRYG 368
Query: 326 AIQGLAALGPSVVHLLILPNL 346
+I GLA LGP VV LI+P L
Sbjct: 369 SIAGLAELGPDVVKTLIVPRL 389
>sp|Q62311|TAF6_MOUSE Transcription initiation factor TFIID subunit 6 OS=Mus musculus
GN=Taf6 PE=2 SV=1
Length = 678
Score = 271 bits (693), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 146/387 (37%), Positives = 228/387 (58%), Gaps = 42/387 (10%)
Query: 2 SIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDV 61
+++P E+++V+A+S+G+ + + L +V YR++EI Q+A+K M R LT +D+
Sbjct: 12 TVLPSESMKVVAESMGIAQIQEETCQLLTDEVSYRIKEIAQDALKFMHMGKRQKLTTSDI 71
Query: 62 DSALNLRNVEPIYGFASGDSLRFKRASGL-KDLYYIDDKDVELRNVIETPLPKAPLDTSV 120
D AL L+NVEP+YGF + + + F+ ASG ++LY+ ++K+V+L ++I TPLP+ PLD +
Sbjct: 72 DYALKLKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVDLSDIINTPLPRVPLDVCL 131
Query: 121 AVHWLAIEGVQPAIPENAPVD---------------------------------AVSDGR 147
HWL+IEG QPAIPEN P A +DG+
Sbjct: 132 KAHWLSIEGCQPAIPENPPPAPKEQQKAEATEPLKSAKPGQEEDGPLKGKGQGAAAADGK 191
Query: 148 RSEYRE----DGISVDIRLPVKHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDS 203
E + +G ++ H LS E QLY+ +I E V S +AL S+A D
Sbjct: 192 GKEKKAPPLLEGAPFRLKPRSIHELSVEQQLYYKEITEACVG-SCEAKRAEALQSIATDP 250
Query: 204 GLHPLVPYFTYFISEEVTRSL--KNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVIT 261
GL+ ++P F+ FISE V ++ N +LL LMR+ ++L+ NP +++E Y+H+++P+V+T
Sbjct: 251 GLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEKYVHELIPAVMT 310
Query: 262 CLVSKRLGNRFS-DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSL 320
C+VS++L R DNHW LR+F A L+A IC F N+QSR+T+T +++D
Sbjct: 311 CIVSRQLCLRPDVDNHWALRDFAARLVAQICKHFSTTTNNIQSRITKTFTKSWVDEKTPW 370
Query: 321 SQHYGAIQGLAALGPSVVHLLILPNLE 347
+ YG+I GLA LG V+ LILP L+
Sbjct: 371 TTRYGSIAGLAELGHDVIKTLILPRLQ 397
>sp|Q63801|TAF6_RAT Transcription initiation factor TFIID subunit 6 OS=Rattus
norvegicus GN=Taf6 PE=2 SV=1
Length = 678
Score = 271 bits (692), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 146/387 (37%), Positives = 228/387 (58%), Gaps = 42/387 (10%)
Query: 2 SIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDV 61
+++P E+++V+A+S+G+ + + L +V YR++EI Q+A+K M R LT +D+
Sbjct: 12 TVLPSESMKVVAESMGIAQIQEETCQLLTDEVSYRIKEIAQDALKFMHMGKRQKLTTSDI 71
Query: 62 DSALNLRNVEPIYGFASGDSLRFKRASGL-KDLYYIDDKDVELRNVIETPLPKAPLDTSV 120
D AL L+NVEP+YGF + + + F+ ASG ++LY+ ++K+V+L ++I TPLP+ PLD +
Sbjct: 72 DYALKLKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVDLSDIINTPLPRVPLDVCL 131
Query: 121 AVHWLAIEGVQPAIPENAPVD---------------------------------AVSDGR 147
HWL+IEG QPAIPEN P A +DG+
Sbjct: 132 KAHWLSIEGCQPAIPENPPPAPKEQQKAEATEPLKSAKPGQEEDGPLKGKGQGAAAADGK 191
Query: 148 RSEYRE----DGISVDIRLPVKHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDS 203
E + +G ++ H LS E QLY+ +I E V S +AL S+A D
Sbjct: 192 GKEKKAPPLLEGAPFRLKPRSIHELSVEQQLYYKEITEACVG-SCEAKRAEALQSIATDP 250
Query: 204 GLHPLVPYFTYFISEEVTRSL--KNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVIT 261
GL+ ++P F+ FISE V ++ N +LL LMR+ ++L+ NP +++E Y+H+++P+V+T
Sbjct: 251 GLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEKYVHELIPAVMT 310
Query: 262 CLVSKRLGNRFS-DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSL 320
C+VS++L R DNHW LR+F A L+A IC F N+QSR+T+T +++D
Sbjct: 311 CIVSRQLCLRPDVDNHWALRDFAARLVAQICKHFSTTTNNIQSRITKTFTKSWVDEKTPW 370
Query: 321 SQHYGAIQGLAALGPSVVHLLILPNLE 347
+ YG+I GLA LG V+ LILP L+
Sbjct: 371 TTRYGSIAGLAELGHDVIKTLILPRLQ 397
>sp|P49848|TAF6_HUMAN Transcription initiation factor TFIID subunit 6 OS=Homo sapiens
GN=TAF6 PE=1 SV=1
Length = 677
Score = 270 bits (689), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 145/387 (37%), Positives = 228/387 (58%), Gaps = 42/387 (10%)
Query: 2 SIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDV 61
+++P E+++V+A+S+G+ + + L +V YR++EI Q+A+K M R LT +D+
Sbjct: 12 TVLPSESMKVVAESMGIAQIQEETCQLLTDEVSYRIKEIAQDALKFMHMGKRQKLTTSDI 71
Query: 62 DSALNLRNVEPIYGFASGDSLRFKRASGL-KDLYYIDDKDVELRNVIETPLPKAPLDTSV 120
D AL L+NVEP+YGF + + + F+ ASG ++LY+ ++K+V+L ++I TPLP+ PLD +
Sbjct: 72 DYALKLKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVDLSDIINTPLPRVPLDVCL 131
Query: 121 AVHWLAIEGVQPAIPENAPVD---------------------------------AVSDGR 147
HWL+IEG QPAIPEN P +DG+
Sbjct: 132 KAHWLSIEGCQPAIPENPPPAPKEQQKAEATEPLKSAKPGQEEDGPLKGKGQGATTADGK 191
Query: 148 RSEYRE----DGISVDIRLPVKHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDS 203
E + +G + ++ H LS E QLY+ +I E V S +AL S+A D
Sbjct: 192 GKEKKAPPLLEGAPLRLKPRSIHELSVEQQLYYKEITEACVG-SCEAKRAEALQSIATDP 250
Query: 204 GLHPLVPYFTYFISEEVTRSL--KNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVIT 261
GL+ ++P F+ FISE V ++ N +LL LMR+ ++L+ NP +++E Y+H+++P+V+T
Sbjct: 251 GLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEKYVHELIPAVMT 310
Query: 262 CLVSKRLGNRFS-DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSL 320
C+VS++L R DNHW LR+F A L+A IC F N+QSR+T+T +++D
Sbjct: 311 CIVSRQLCLRPDVDNHWALRDFAARLVAQICKHFSTTTNNIQSRITKTFTKSWVDEKTPW 370
Query: 321 SQHYGAIQGLAALGPSVVHLLILPNLE 347
+ YG+I GLA LG V+ LILP L+
Sbjct: 371 TTRYGSIAGLAELGHDVIKTLILPRLQ 397
>sp|P49847|TAF6_DROME Transcription initiation factor TFIID subunit 6 OS=Drosophila
melanogaster GN=Taf6 PE=1 SV=2
Length = 606
Score = 261 bits (667), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 150/386 (38%), Positives = 228/386 (59%), Gaps = 30/386 (7%)
Query: 2 SIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDV 61
S + E+++VIA+SIGV +LS D A LA DV +++ I+Q+A K M HA R L+ D+
Sbjct: 19 SSISAESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDI 78
Query: 62 DSALNLRNVEPIYGFASGDSLRFKRASGL-KDLYYIDDKDVELRNVIETPLPKAPLDTSV 120
D +L +RNVEP YGF + D + F+ ASG ++L++ +DK+++L + T K PLD ++
Sbjct: 79 DMSLKVRNVEPQYGFVAKDFIPFRFASGGGRELHFTEDKEIDLGEITSTNSVKIPLDLTL 138
Query: 121 AVHWLAIEGVQPAIPENAP--------VDAV-------------SDGRRSEYR----EDG 155
HW +EGVQP +PEN P +D+V + G+ + + ++
Sbjct: 139 RSHWFVVEGVQPTVPENPPPLSKDSQLLDSVNPVIKMDQGLNKDAAGKPTTGKIHKLKNV 198
Query: 156 ISVDIRLPVKHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYF 215
++ ++ H LS E QLY+ +I E V S+ +AL SL D GLH ++P F
Sbjct: 199 ETIHVKQLATHELSVEQQLYYKEITEACVG-SDEPRRGEALQSLGSDPGLHEMLPRMCTF 257
Query: 216 ISEEVTRSL--KNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFS 273
I+E V ++ N +LL LMR+ R+LL NP + +E YLH+++PSV+TC+VSK+L R
Sbjct: 258 IAEGVKVNVVQNNLALLIYLMRMVRALLDNPSLFLEKYLHELIPSVMTCIVSKQLCMRPE 317
Query: 274 -DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAA 332
DNHW LR+F + L+A IC F + NLQ+RVTR A + LS YG+I GL+
Sbjct: 318 LDNHWALRDFASRLMAQICKNFNTLTNNLQTRVTRIFSKALQNDKTHLSSLYGSIAGLSE 377
Query: 333 LGPSVVHLLILPNLELYLKFLEPEML 358
LG V+ + I+P L+ + +EP +L
Sbjct: 378 LGGEVIKVFIIPRLKFISERIEPHLL 403
>sp|P53040|TAF6_YEAST Transcription initiation factor TFIID subunit 6 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TAF6 PE=1
SV=1
Length = 516
Score = 251 bits (642), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 144/393 (36%), Positives = 227/393 (57%), Gaps = 60/393 (15%)
Query: 5 PKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSA 64
P++T++ +A+S+G+ N++ DV ALA DVEYR+ EI+++A+K RH+ R VLT +DV A
Sbjct: 13 PQDTVKDVAESLGLENINDDVLKALAMDVEYRILEIIEQAVKFKRHSKRDVLTTDDVSKA 72
Query: 65 LNLRNVEPIYGFASGD----SLRFKR--ASGLKDLYYIDDKDVELRNVIETPLPKAPLDT 118
L + NVEP+YG+ G ++ F + SG + +YY+D+++V+ +I PLP+ P
Sbjct: 73 LRVLNVEPLYGYYDGSEVNKAVSFSKVNTSGGQSVYYLDEEEVDFDRLINEPLPQVPRLP 132
Query: 119 SVAVHWLAIEGVQPAIPEN----------------------------APVDA------VS 144
+ HWLA+EGVQPAI +N PV + V+
Sbjct: 133 TFTTHWLAVEGVQPAIIQNPNLNDIRVSQPPFIRGAIVTALNDNSLQTPVTSTTASASVT 192
Query: 145 DGRRSEYRED---GISVDIRLPVKHVLSKELQLYFDKIRELTVSRSNSTVFKQ-----AL 196
D S++ + G + +++ VKHVLSKELQ+YF+K+ ++S + Q AL
Sbjct: 193 DTGASQHLSNVKPGQNTEVKPLVKHVLSKELQIYFNKVISTLTAKSQADEAAQHMKQAAL 252
Query: 197 LSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMM 256
SL DSGLH LVPYF FI+E++T++L + LL ++ + SLL N I ++PY+H +M
Sbjct: 253 TSLRTDSGLHQLVPYFIQFIAEQITQNLSDLQLLTTILEMIYSLLSNTSIFLDPYIHSLM 312
Query: 257 PSVITCLVSKRLGNRFSDNHWD-----------LRNFVADLIASICTRFGHVYQNLQSRV 305
PS++T L++K+LG D+ LR+F A L+ + +F Y++L+ RV
Sbjct: 313 PSILTLLLAKKLGGSPKDDSPQEIHEFLERTNALRDFAASLLDYVLKKFPQAYKSLKPRV 372
Query: 306 TRTLLHAFLDPTKSLSQHYGAIQGLAAL-GPSV 337
TRTLL FLD + +YG ++G++ L G S+
Sbjct: 373 TRTLLKTFLDINRVFGTYYGCLKGVSVLEGESI 405
>sp|Q8R2K4|TAF6L_MOUSE TAF6-like RNA polymerase II p300/CBP-associated factor-associated
factor 65 kDa subunit 6L OS=Mus musculus GN=Taf6l PE=2
SV=1
Length = 616
Score = 160 bits (406), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 192/380 (50%), Gaps = 30/380 (7%)
Query: 4 VPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDS 63
+P+E++ ++A+S G+ LS +VA LA DV YR+RE Q + + M+H R LT D +
Sbjct: 12 IPRESVRLMAESTGL-ELSDEVAALLAEDVCYRLREATQNSSQFMKHTKRRKLTVEDFNR 70
Query: 64 ALNLRNVEPIYGFASGDSLRFKRASGLKDLYYIDDKDVELRNV-IETPLPKAPLDTSVAV 122
AL +VE + G+ S ++L + A DLY+ +D++V L + + T +PK +T+V V
Sbjct: 71 ALRWSSVEAVCGYGSQEALPLRPAR-EGDLYFPEDREVSLVELALATNIPKGCAETAVRV 129
Query: 123 HWLAIEGVQPAIPENAPVDAVSDGRRSEYREDGISVDIRLPVKHVLSKELQLYFDKIREL 182
H ++G P+ + AVS L+ +L Y+ ++
Sbjct: 130 HVSYLDGKGNLAPQGSVPSAVSS----------------------LTDDLLKYYQQVTRA 167
Query: 183 TVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLR 242
+ + + K AL L +S + L+PYF Y +S V + L L++VARSL+R
Sbjct: 168 VLG-DDPQLMKVALQDLQTNSKIAALLPYFVYVVSG-VKSVSHDLEQLHRLLQVARSLIR 225
Query: 243 NPHIHIEPYLHQMMPSVITCLVSKRLG--NRFSDNHWDLRNFVADLIASICTRFGHVYQN 300
NPH+ + PY+ ++ SV+ C++ N +D HW LR+ A L++ I G +
Sbjct: 226 NPHLCLGPYVRSLVGSVLYCVLEPLAASINPLND-HWTLRDGAALLLSHIFWTHGDLVSG 284
Query: 301 LQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLE 360
L ++ +L DP + L HYGA+ GL ALG V ++ P+L Y L+ +
Sbjct: 285 LYQQILLSLQKVLTDPVRPLCSHYGAVVGLHALGWKAVERVLYPHLPTYWTNLQAVLDDY 344
Query: 361 KQKNEMKRHEAWRVYGALQV 380
N + + +VYGA+ V
Sbjct: 345 SVSNAQVKADGHKVYGAILV 364
>sp|Q9Y6J9|TAF6L_HUMAN TAF6-like RNA polymerase II p300/CBP-associated factor-associated
factor 65 kDa subunit 6L OS=Homo sapiens GN=TAF6L PE=1
SV=1
Length = 622
Score = 155 bits (393), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 115/380 (30%), Positives = 190/380 (50%), Gaps = 30/380 (7%)
Query: 4 VPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDS 63
+P+E++ ++A+S G+ LS +VA LA DV YR+RE Q + + M+H R LT D +
Sbjct: 12 IPRESVRLMAESTGL-ELSDEVAALLAEDVCYRLREATQNSSQFMKHTKRRKLTVEDFNR 70
Query: 64 ALNLRNVEPIYGFASGDSLRFKRASGLKDLYYIDDKDVELRNV-IETPLPKAPLDTSVAV 122
AL +VE + G+ S ++L + A +LY+ +D++V L + + T +PK +T+V V
Sbjct: 71 ALRWSSVEAVCGYGSQEALPMRPAR-EGELYFPEDREVNLVELALATNIPKGCAETAVRV 129
Query: 123 HWLAIEGVQPAIPENAPVDAVSDGRRSEYREDGISVDIRLPVKHVLSKELQLYFDKIREL 182
H ++G P+ + AVS L+ +L Y+ ++
Sbjct: 130 HVSYLDGKGNLAPQGSVPSAVSS----------------------LTDDLLKYYHQVTRA 167
Query: 183 TVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLR 242
+ + + K AL L +S + L+PYF Y +S V + L L++VARSL R
Sbjct: 168 VLG-DDPQLMKVALQDLQTNSKIGALLPYFVYVVSG-VKSVSHDLEQLHRLLQVARSLFR 225
Query: 243 NPHIHIEPYLHQMMPSVITCLVSKRLG--NRFSDNHWDLRNFVADLIASICTRFGHVYQN 300
NPH+ + PY+ ++ SV+ C++ N +D HW LR+ A L++ I G +
Sbjct: 226 NPHLCLGPYVRCLVGSVLYCVLEPLAASINPLND-HWTLRDGAALLLSHIFWTHGDLVSG 284
Query: 301 LQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLE 360
L + +L DP + L HYGA+ GL ALG V ++ P+L Y L+ +
Sbjct: 285 LYQHILLSLQKILADPVRPLCCHYGAVVGLHALGWKAVERVLYPHLSTYWTNLQAVLDDY 344
Query: 361 KQKNEMKRHEAWRVYGALQV 380
N + + +VYGA+ V
Sbjct: 345 SVSNAQVKADGHKVYGAILV 364
>sp|O27731|HMT2_METTH DNA-binding protein HMt-1.2 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=hmtA2 PE=3 SV=3
Length = 68
Score = 38.9 bits (89), Expect = 0.060, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 36/64 (56%)
Query: 1 MSIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTAND 60
M+ +P + I ++ G +S D ALA +E + EI +EA+K +HA R + A+D
Sbjct: 1 MAELPIAPVGRIIKNAGAQRISDDAREALAKILEEKGEEIAKEAVKLAKHAGRKTVKASD 60
Query: 61 VDSA 64
++ A
Sbjct: 61 IELA 64
>sp|P48781|HMFA_METFE DNA-binding protein HMf-1 OS=Methanothermus fervidus GN=hmfA PE=1
SV=1
Length = 69
Score = 38.5 bits (88), Expect = 0.10, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 33/64 (51%)
Query: 1 MSIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTAND 60
M +P I I ++ G +S D +ALA +E EI EA+K +HA R + A D
Sbjct: 1 MGELPIAPIGRIIKNAGAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAED 60
Query: 61 VDSA 64
++ A
Sbjct: 61 IELA 64
>sp|P19267|HMFB_METFE DNA-binding protein HMf-2 OS=Methanothermus fervidus GN=hmfB PE=1
SV=1
Length = 69
Score = 38.1 bits (87), Expect = 0.11, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 4 VPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDS 63
+P I I + G +S D + LA +E R+I EAIK RHA R + A D++
Sbjct: 3 LPIAPIGRIIKDAGAERVSDDARITLAKILEEMGRDIASEAIKLARHAGRKTIKAEDIEL 62
Query: 64 AL 65
A+
Sbjct: 63 AV 64
>sp|P48784|HFOB_METFO Archaeal histone B OS=Methanobacterium formicicum GN=hfoB PE=3
SV=1
Length = 67
Score = 35.8 bits (81), Expect = 0.56, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 4 VPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDS 63
+P I I ++ G +S D ALA +E + I EA+K +HA R + A+DV+
Sbjct: 3 LPIAPIGRIIKNAGAERVSDDAREALAKALEEKGETIATEAVKLAKHAGRKTVKASDVEL 62
Query: 64 AL 65
A+
Sbjct: 63 AV 64
>sp|Q6FE36|SYM_ACIAD Methionine--tRNA ligase OS=Acinetobacter sp. (strain ADP1) GN=metG
PE=3 SV=1
Length = 685
Score = 35.0 bits (79), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 64/147 (43%), Gaps = 18/147 (12%)
Query: 242 RNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFV----ADL------IASIC 291
R I E YL + P + + +L ++ D+ +L +FV +DL IAS C
Sbjct: 335 RGTFIKAETYLQHLNPEYLRYYFASKLSDKVEDSDLNLDDFVQKVNSDLVGKVVNIASRC 394
Query: 292 TRF-GHVYQNLQSR--VTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPN-LE 347
+F + N S L+ +F+D S++Q Y A + AA + ++ L +
Sbjct: 395 AKFINSSFNNTLSANCAEPELVQSFIDAGDSIAQAYEAREFSAA----IREIMALADKAN 450
Query: 348 LYLKFLEPEMLLEKQKNEMKRHEAWRV 374
Y+ +P L +++ E + H V
Sbjct: 451 QYIDEKKPWALAKQEGQEQQVHNVCSV 477
>sp|P48783|HFO2_METFO Archaeal histone A2 OS=Methanobacterium formicicum GN=hfoA2 PE=1
SV=3
Length = 68
Score = 35.0 bits (79), Expect = 0.92, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 35/65 (53%)
Query: 1 MSIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTAND 60
M+ +P + I ++ G +S D ALA +E E+ ++A++ +HA R + A D
Sbjct: 1 MAELPIAPVGRIIKNAGAQRISDDAKEALAKALEENGEELAKKAVELAKHAGRKTVKAED 60
Query: 61 VDSAL 65
++ A+
Sbjct: 61 IEMAV 65
>sp|P50483|HMT1_METTH DNA-binding protein HMt-1.1 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=hmtA1 PE=3 SV=2
Length = 68
Score = 35.0 bits (79), Expect = 0.97, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 34/64 (53%)
Query: 1 MSIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTAND 60
M+ +P + I ++ G +S D ALA +E EI ++A++ +HA R + A D
Sbjct: 1 MAELPIAPVGRIIKNAGAQRISDDAKEALAKALEEMGEEISRKAVELAKHAGRKTVKATD 60
Query: 61 VDSA 64
++ A
Sbjct: 61 IEMA 64
>sp|P50484|HMTB_METTH DNA-binding protein HMt-2 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=hmtB PE=3 SV=1
Length = 67
Score = 35.0 bits (79), Expect = 1.0, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 4 VPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDS 63
+P I I ++ G +S D ALA +E + EI + A+K +HA R + A+D++
Sbjct: 3 LPIAPIGRIIKNAGAEIVSDDAREALAKVLEAKGEEIAENAVKLAKHAGRKTVKASDIEL 62
Query: 64 AL 65
A+
Sbjct: 63 AV 64
>sp|Q29116|TENA_PIG Tenascin OS=Sus scrofa GN=TNC PE=1 SV=1
Length = 1746
Score = 34.3 bits (77), Expect = 1.7, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 53/135 (39%), Gaps = 9/135 (6%)
Query: 29 LAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFASGDSLRFKRAS 88
L PD EY V I + A A T T +D+ NLR + + +L ++
Sbjct: 863 LKPDTEYEVSLISRRADMSSNPAKETFTTG--LDAPRNLRRISQT---DNSITLEWRNGK 917
Query: 89 GLKDLYYIDDKDVELRNVIETPLPKAPLDTSVAVHWLAIEGVQPAIPENAPVDAVSDGRR 148
D Y I + + E +P++P T+ A + G++P V AV +
Sbjct: 918 AAADTYRIKYAPISGGDHAEVEVPRSPQTTTKA----TLTGLRPGTEYGIGVSAVKGDKE 973
Query: 149 SEYREDGISVDIRLP 163
S+ + D+ P
Sbjct: 974 SDPATINAATDLDPP 988
>sp|P95669|HANA_THEZI Archaeal histone HAN1 subunit A OS=Thermococcus zilligii GN=han1A
PE=1 SV=3
Length = 67
Score = 33.5 bits (75), Expect = 2.7, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 34/65 (52%)
Query: 1 MSIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTAND 60
M+ +P I+ + + G +S D A ALA +E E+ ++A + RHA R + A D
Sbjct: 1 MAELPIAPIDRLIRKAGAERVSEDAAKALAEYLEEYAIEVGKKATEFARHAGRKTVKAED 60
Query: 61 VDSAL 65
V A+
Sbjct: 61 VRLAV 65
>sp|P48782|HFO1_METFO Archaeal histone A1 OS=Methanobacterium formicicum GN=hfoA1 PE=1
SV=3
Length = 68
Score = 33.5 bits (75), Expect = 2.8, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 34/65 (52%)
Query: 1 MSIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTAND 60
M+ +P + I ++ G +S D ALA +E I EA+K +HA R + A+D
Sbjct: 1 MAELPIAPVGRIIKNAGAPRVSDDARDALAKVLEEMGEGIAAEAVKLAKHAGRKTVKASD 60
Query: 61 VDSAL 65
++ A+
Sbjct: 61 IEMAV 65
>sp|A1A1W7|ASSY_BIFAA Argininosuccinate synthase OS=Bifidobacterium adolescentis (strain
ATCC 15703 / DSM 20083 / NCTC 11814 / E194a) GN=argG
PE=3 SV=1
Length = 418
Score = 33.1 bits (74), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 45 IKCMRHAHRTVLTANDVDSALNLRNVEPIYGFASGDSLRFKRASGLKDLYYIDD-----K 99
I+ + H R V+T DS+L N+ + SGDS K ++G D+Y + +
Sbjct: 346 IRMVLHGGRAVVTGRRSDSSLYDYNLAT---YDSGDSFDQKSSNGFIDIYGLPSRVAAAR 402
Query: 100 DVELRNVIETP 110
DV+ N IE P
Sbjct: 403 DVKFGNGIEVP 413
>sp|Q57632|HJA1_METJA Probable archaeal histone 1 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 /
NBRC 100440) GN=MJ0168 PE=3 SV=1
Length = 67
Score = 33.1 bits (74), Expect = 4.2, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 1 MSIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTAND 60
M+ +P E I + G +S A LA VE EI +EA++ +HA R + D
Sbjct: 1 MAELPVAPFERILKKAGAERVSRAAAEYLAEAVEEIALEIAKEAVELAKHAKRKTVKVED 60
Query: 61 VDSAL 65
+ AL
Sbjct: 61 IKLAL 65
>sp|Q58342|HJA2_METJA Probable archaeal histone 2 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 /
NBRC 100440) GN=MJ0932 PE=3 SV=1
Length = 67
Score = 33.1 bits (74), Expect = 4.2, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 1 MSIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTAND 60
M+ +P E I + G +S A LA VE EI +EA++ +HA R + D
Sbjct: 1 MAELPVAPFERILKKAGAERVSRAAAEYLAEAVEEIALEIAKEAVELAKHAKRKTVKVED 60
Query: 61 VDSAL 65
+ AL
Sbjct: 61 IKLAL 65
>sp|Q7VJY0|YIDC_HELHP Membrane protein insertase YidC OS=Helicobacter hepaticus (strain
ATCC 51449 / 3B1) GN=yidC PE=3 SV=1
Length = 591
Score = 32.7 bits (73), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 20 NLSSDVALALA-PDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSAL 65
NL+ DV L L+ P++EY V M+ +A R V+T N++D L
Sbjct: 224 NLAYDVRLELSKPNIEYFVSNGMRPTADTDTYAFRGVITRNNIDGVL 270
>sp|Q60264|HJA4_METJA Probable archaeal histone 4 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 /
NBRC 100440) GN=MJECL29 PE=3 SV=1
Length = 67
Score = 32.3 bits (72), Expect = 6.9, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 1 MSIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTAND 60
M+ +P E I + +G +S A LA E EI +EA+ +HA R + D
Sbjct: 1 MTELPVAPFERILKKVGAERVSRAAAEYLAEAFEEIALEIAKEAVDLAKHAKRKTVKVED 60
Query: 61 VDSAL 65
+ AL
Sbjct: 61 IKLAL 65
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 138,928,018
Number of Sequences: 539616
Number of extensions: 5628332
Number of successful extensions: 13641
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 13585
Number of HSP's gapped (non-prelim): 34
length of query: 393
length of database: 191,569,459
effective HSP length: 119
effective length of query: 274
effective length of database: 127,355,155
effective search space: 34895312470
effective search space used: 34895312470
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.5 bits)