Query 016189
Match_columns 393
No_of_seqs 154 out of 326
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 09:24:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016189.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016189hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4atg_A TAF6; transcription, TF 100.0 1.3E-60 4.6E-65 437.6 20.1 182 165-356 2-183 (196)
2 1taf_B TFIID TBP associated fa 99.9 2.8E-25 9.5E-30 170.6 9.7 67 1-67 4-70 (70)
3 2hue_C Histone H4; mini beta s 99.8 1.3E-19 4.4E-24 144.8 6.9 75 3-78 10-84 (84)
4 1id3_B Histone H4; nucleosome 99.8 8.2E-19 2.8E-23 144.9 8.1 75 3-78 28-102 (102)
5 2yfw_B Histone H4, H4; cell cy 99.7 9.2E-18 3.2E-22 139.0 7.3 75 3-78 29-103 (103)
6 1tzy_D Histone H4-VI; histone- 99.7 1.2E-17 4E-22 138.3 7.7 75 3-78 29-103 (103)
7 1ku5_A HPHA, archaeal histon; 99.4 1.5E-12 5.2E-17 100.2 8.3 67 1-67 4-70 (70)
8 2ly8_A Budding yeast chaperone 99.3 4.3E-12 1.5E-16 107.0 6.8 63 14-77 58-120 (121)
9 2l5a_A Histone H3-like centrom 99.2 3.2E-12 1.1E-16 118.5 1.7 68 9-77 167-234 (235)
10 1f1e_A Histone fold protein; a 99.1 1.5E-10 5.2E-15 101.7 8.3 72 1-72 2-74 (154)
11 3b0c_T CENP-T, centromere prot 99.0 4.1E-10 1.4E-14 94.1 7.8 67 3-69 7-73 (111)
12 1b67_A Protein (histone HMFA); 99.0 1.5E-09 5.1E-14 82.7 8.9 67 2-68 1-67 (68)
13 1taf_A TFIID TBP associated fa 98.9 2.9E-09 9.8E-14 81.1 8.5 62 7-68 5-66 (68)
14 1f1e_A Histone fold protein; a 98.9 2.8E-09 9.4E-14 93.7 8.5 66 3-68 82-147 (154)
15 1n1j_A NF-YB; histone-like PAI 98.6 1.5E-07 5.1E-12 76.0 9.0 68 3-70 8-77 (93)
16 4dra_A Centromere protein S; D 98.6 5.1E-08 1.7E-12 81.0 5.5 60 8-67 32-94 (113)
17 3b0c_W CENP-W, centromere prot 98.6 1.5E-07 5.3E-12 73.2 7.7 66 3-68 4-70 (76)
18 3b0b_B CENP-S, centromere prot 98.6 8.2E-08 2.8E-12 79.4 6.0 60 8-67 24-86 (107)
19 2hue_B Histone H3; mini beta s 98.5 5.4E-07 1.8E-11 70.1 8.6 70 1-70 1-75 (77)
20 3v9r_A MHF1, uncharacterized p 98.4 6.5E-07 2.2E-11 71.7 8.2 58 9-67 18-79 (90)
21 3nqj_A Histone H3-like centrom 98.4 9.3E-07 3.2E-11 69.6 8.1 71 1-71 1-78 (82)
22 3vh5_A CENP-S; histone fold, c 98.3 7.3E-07 2.5E-11 76.5 5.4 58 9-67 25-86 (140)
23 1jfi_B DR1 protein, transcript 98.2 5.1E-06 1.7E-10 74.5 9.2 69 3-71 15-84 (179)
24 2byk_B Chrac-14; nucleosome sl 98.2 4.6E-06 1.6E-10 71.2 8.0 69 3-71 9-79 (128)
25 1n1j_B NF-YC; histone-like PAI 98.1 8.3E-06 2.8E-10 66.3 7.7 66 2-67 18-84 (97)
26 2yfv_A Histone H3-like centrom 97.9 2.5E-05 8.6E-10 63.7 7.4 65 3-67 27-99 (100)
27 2nqb_C Histone H2A; nucleosome 97.9 3E-05 1E-09 65.7 7.9 64 3-66 23-87 (123)
28 2f8n_G Core histone macro-H2A. 97.9 3E-05 1E-09 65.4 7.6 64 3-66 22-86 (120)
29 3nqu_A Histone H3-like centrom 97.9 2.6E-05 8.9E-10 67.1 7.1 69 3-71 61-136 (140)
30 1tzy_C Histone H3; histone-fol 97.8 4.8E-05 1.6E-09 65.3 8.2 68 3-70 62-134 (136)
31 1tzy_A Histone H2A-IV; histone 97.8 4.5E-05 1.5E-09 65.1 7.9 64 3-66 25-89 (129)
32 2f8n_K Histone H2A type 1; nuc 97.8 4.2E-05 1.4E-09 66.6 7.4 65 3-67 44-109 (149)
33 1jfi_A Transcription regulator 97.8 3E-05 1E-09 63.1 5.7 65 3-67 11-76 (98)
34 3r45_A Histone H3-like centrom 97.8 3.8E-05 1.3E-09 66.9 6.6 68 3-70 77-151 (156)
35 1id3_C Histone H2A.1; nucleoso 97.7 4.6E-05 1.6E-09 65.2 6.7 64 3-66 25-89 (131)
36 4g92_C HAPE; transcription fac 97.6 0.00013 4.4E-09 61.4 7.5 65 3-67 41-106 (119)
37 1f66_C Histone H2A.Z; nucleoso 97.6 0.00011 3.8E-09 62.5 6.9 65 3-67 27-93 (128)
38 1ibr_B P95, importin beta-1 su 97.6 0.0029 9.9E-08 62.1 17.7 127 247-383 314-440 (462)
39 2jss_A Chimera of histone H2B. 97.4 0.00031 1.1E-08 63.8 8.0 64 3-66 105-170 (192)
40 4fdd_A Transportin-1; heat rep 97.4 0.0031 1.1E-07 68.1 17.1 195 175-381 216-430 (852)
41 2nqb_D Histone H2B; nucleosome 97.3 0.00055 1.9E-08 57.4 7.3 61 8-68 38-99 (123)
42 1qgr_A Protein (importin beta 97.3 0.0025 8.6E-08 68.1 13.9 180 190-384 343-541 (876)
43 1tzy_B Histone H2B; histone-fo 97.2 0.00073 2.5E-08 56.9 7.3 61 8-68 41-102 (126)
44 2bpt_A Importin beta-1 subunit 97.1 0.014 4.7E-07 62.2 17.7 125 248-382 318-442 (861)
45 2bpt_A Importin beta-1 subunit 97.0 0.0058 2E-07 65.1 13.8 179 190-384 346-533 (861)
46 2qk2_A LP04448P; mini spindles 97.0 0.013 4.4E-07 53.5 14.1 131 230-387 78-212 (242)
47 4fdd_A Transportin-1; heat rep 96.9 0.017 5.7E-07 62.4 16.1 149 195-358 344-493 (852)
48 1qgr_A Protein (importin beta 96.8 0.029 9.9E-07 59.8 16.6 145 230-383 625-777 (876)
49 1h3o_B Transcription initiatio 96.7 0.011 3.7E-07 45.7 9.0 65 3-67 5-70 (76)
50 2qk2_A LP04448P; mini spindles 96.6 0.024 8.2E-07 51.6 12.7 110 171-296 95-209 (242)
51 2byk_A Chrac-16; nucleosome sl 96.5 0.0021 7.3E-08 55.4 4.7 65 3-67 19-85 (140)
52 2qk1_A Protein STU2; STU2P, XM 96.5 0.067 2.3E-06 49.7 15.2 185 187-387 28-227 (249)
53 2jss_A Chimera of histone H2B. 96.5 0.0076 2.6E-07 54.6 8.2 60 8-67 8-68 (192)
54 1bh9_B TAFII28; histone fold, 96.0 0.035 1.2E-06 44.1 8.7 68 2-69 15-83 (89)
55 1u6g_C TIP120 protein, CAND1; 95.5 0.49 1.7E-05 53.0 19.1 138 228-380 492-637 (1230)
56 1u6g_C TIP120 protein, CAND1; 94.9 1 3.5E-05 50.5 19.2 187 177-383 9-207 (1230)
57 1b3u_A Protein (protein phosph 94.7 0.9 3.1E-05 45.6 16.6 114 251-383 438-551 (588)
58 1ibr_B P95, importin beta-1 su 94.7 0.13 4.6E-06 50.0 9.9 90 195-296 351-441 (462)
59 1b3u_A Protein (protein phosph 94.6 0.68 2.3E-05 46.5 15.4 57 274-334 175-231 (588)
60 2l5a_A Histone H3-like centrom 94.5 0.078 2.7E-06 49.1 7.2 64 8-71 20-87 (235)
61 2qk1_A Protein STU2; STU2P, XM 93.8 1.2 4.3E-05 41.0 14.1 147 174-333 60-218 (249)
62 4dra_E Centromere protein X; D 93.8 0.35 1.2E-05 37.9 8.5 62 3-65 12-77 (84)
63 1h3o_A Transcription initiatio 92.8 0.075 2.6E-06 40.8 3.2 44 8-51 11-54 (75)
64 3b0b_C CENP-X, centromere prot 92.4 0.51 1.8E-05 36.7 7.6 63 3-65 8-73 (81)
65 2x1g_F Cadmus; transport prote 90.9 2.4 8.2E-05 46.1 14.0 148 195-358 444-594 (971)
66 2x19_B Importin-13; nuclear tr 90.8 2.2 7.5E-05 46.2 13.5 160 206-382 440-601 (963)
67 4ffb_C Protein STU2; tubulin f 90.1 5.4 0.00019 36.7 13.8 143 226-384 68-216 (278)
68 4db6_A Armadillo repeat protei 88.9 1.1 3.8E-05 38.8 7.6 110 207-333 54-165 (210)
69 1wa5_C Importin alpha RE-expor 88.8 6.9 0.00024 42.7 15.5 149 195-359 384-559 (960)
70 4hat_C Exportin-1; heat repeat 88.3 2.1 7.3E-05 47.7 11.0 156 194-357 435-598 (1023)
71 1wa5_C Importin alpha RE-expor 88.0 1.7 5.9E-05 47.5 10.0 107 227-333 306-432 (960)
72 4db8_A Armadillo-repeat protei 87.0 2.2 7.5E-05 37.9 8.5 111 208-335 55-167 (252)
73 4hxt_A De novo protein OR329; 86.7 2.7 9.1E-05 36.9 8.8 108 207-335 44-157 (252)
74 3m1i_C Exportin-1; heat repeat 86.6 13 0.00045 40.9 16.2 125 205-334 338-481 (1049)
75 2vgl_B AP-2 complex subunit be 85.8 11 0.00037 38.8 14.1 75 249-336 116-190 (591)
76 4hxt_A De novo protein OR329; 85.7 4.3 0.00015 35.5 9.7 140 177-334 47-198 (252)
77 1wa5_B Importin alpha subunit; 85.2 5.1 0.00018 40.2 11.1 112 206-334 214-327 (530)
78 1wa5_B Importin alpha subunit; 84.3 19 0.00066 35.8 14.9 112 206-334 172-285 (530)
79 4db8_A Armadillo-repeat protei 83.8 3.5 0.00012 36.5 8.2 110 208-334 97-208 (252)
80 2of3_A ZYG-9; multifunctional 83.4 17 0.00058 34.1 13.0 147 212-389 88-245 (266)
81 1oyz_A Hypothetical protein YI 83.1 26 0.00088 31.5 14.2 15 320-334 206-220 (280)
82 4ffb_C Protein STU2; tubulin f 83.0 8.1 0.00028 35.5 10.7 129 175-314 103-242 (278)
83 2jdq_A Importin alpha-1 subuni 82.7 19 0.00066 34.4 13.7 112 207-335 149-263 (450)
84 3uk6_A RUVB-like 2; hexameric 82.1 4.8 0.00017 38.3 9.0 57 10-67 269-329 (368)
85 2jdq_A Importin alpha-1 subuni 82.1 20 0.00068 34.2 13.5 140 178-334 153-304 (450)
86 2iw3_A Elongation factor 3A; a 81.8 44 0.0015 37.1 17.5 146 195-357 37-184 (986)
87 2x1g_F Cadmus; transport prote 81.8 6.2 0.00021 42.9 10.7 85 230-331 527-614 (971)
88 3ltj_A Alpharep-4; protein eng 81.5 24 0.00081 30.0 13.9 49 275-335 119-167 (201)
89 1vsy_5 Proteasome activator BL 79.3 1.4 4.7E-05 49.2 4.4 98 225-333 814-922 (997)
90 1jr3_D DNA polymerase III, del 78.7 1.8 6.1E-05 41.3 4.6 60 7-67 149-208 (343)
91 2vgl_A Adaptor protein complex 78.4 27 0.00091 36.3 13.9 78 249-337 141-218 (621)
92 1w63_A Adapter-related protein 78.2 12 0.0004 38.9 11.0 139 175-337 351-492 (618)
93 3ltm_A Alpha-REP4; protein eng 77.2 33 0.0011 29.2 14.1 50 274-335 123-172 (211)
94 2vgl_B AP-2 complex subunit be 77.1 6.6 0.00023 40.4 8.6 125 189-337 332-459 (591)
95 4b8j_A Importin subunit alpha- 76.2 25 0.00087 34.8 12.5 112 207-334 160-272 (528)
96 3bos_A Putative DNA replicatio 75.7 4.4 0.00015 35.4 6.0 57 8-66 182-241 (242)
97 2chg_A Replication factor C sm 74.5 5.5 0.00019 34.0 6.2 55 9-66 170-224 (226)
98 3m1i_C Exportin-1; heat repeat 74.1 28 0.00095 38.3 13.2 155 194-358 435-599 (1049)
99 3kw6_A 26S protease regulatory 73.8 3.3 0.00011 30.9 4.0 42 26-67 27-72 (78)
100 4b8j_A Importin subunit alpha- 73.6 34 0.0012 33.9 12.7 123 195-333 226-356 (528)
101 2x19_B Importin-13; nuclear tr 72.3 21 0.00073 38.4 11.5 131 233-383 513-652 (963)
102 3ltm_A Alpha-REP4; protein eng 71.8 46 0.0016 28.3 12.9 121 177-336 22-142 (211)
103 3ltj_A Alpharep-4; protein eng 71.0 47 0.0016 28.0 13.2 115 184-336 23-137 (201)
104 2dzn_B 26S protease regulatory 70.1 4.4 0.00015 30.6 4.0 33 36-68 36-68 (82)
105 3ksy_A SOS-1, SON of sevenless 69.6 11 0.00039 42.0 8.7 64 4-67 105-168 (1049)
106 1in4_A RUVB, holliday junction 66.6 15 0.00053 34.8 8.0 63 8-71 188-253 (334)
107 3vlf_B 26S protease regulatory 64.6 7.5 0.00025 29.9 4.3 44 26-69 25-72 (88)
108 1njg_A DNA polymerase III subu 63.8 11 0.00037 32.4 5.8 55 10-66 195-249 (250)
109 2krk_A 26S protease regulatory 63.7 7 0.00024 30.0 4.0 34 35-68 48-81 (86)
110 4db6_A Armadillo repeat protei 62.1 17 0.00059 30.9 6.8 107 207-334 96-208 (210)
111 1w63_A Adapter-related protein 62.1 65 0.0022 33.2 12.3 71 251-336 139-209 (618)
112 3ibv_A Exportin-T; karyopherin 59.4 41 0.0014 37.1 10.7 96 207-314 486-588 (980)
113 3aji_B S6C, proteasome (prosom 59.3 5.6 0.00019 29.9 2.7 34 35-68 38-71 (83)
114 1te4_A Conserved protein MTH18 59.2 15 0.0005 29.5 5.4 51 274-336 53-103 (131)
115 3v9r_B MHF2, uncharacterized p 58.4 14 0.00049 28.8 4.8 62 3-65 1-73 (88)
116 2v1u_A Cell division control p 55.5 35 0.0012 31.9 8.2 65 4-68 201-276 (387)
117 2c9o_A RUVB-like 1; hexameric 54.6 35 0.0012 33.9 8.4 58 10-68 376-437 (456)
118 2z6h_A Catenin beta-1, beta-ca 54.5 74 0.0025 32.6 11.1 131 187-333 26-167 (644)
119 1g8p_A Magnesium-chelatase 38 52.2 47 0.0016 30.8 8.5 51 17-68 265-322 (350)
120 1oyz_A Hypothetical protein YI 50.1 1.4E+02 0.0047 26.5 17.8 57 274-336 102-158 (280)
121 1sxj_D Activator 1 41 kDa subu 48.6 11 0.00038 35.2 3.4 56 10-66 202-261 (353)
122 3k1j_A LON protease, ATP-depen 48.1 35 0.0012 35.3 7.4 50 18-67 312-374 (604)
123 4hat_C Exportin-1; heat repeat 47.8 1.4E+02 0.0047 33.1 12.5 90 233-336 524-623 (1023)
124 2qz4_A Paraplegin; AAA+, SPG7, 47.7 11 0.00036 33.8 3.0 60 8-68 185-249 (262)
125 2qby_A CDC6 homolog 1, cell di 46.9 88 0.003 29.0 9.5 65 4-68 197-272 (386)
126 3h4m_A Proteasome-activating n 46.6 16 0.00053 33.3 4.0 43 26-68 212-258 (285)
127 2z6g_A B-catenin; FULL-length, 46.4 27 0.00091 37.3 6.3 94 226-334 373-471 (780)
128 1jdh_A Beta-catenin; beta-cate 46.1 1.2E+02 0.004 29.5 10.7 131 186-332 28-169 (529)
129 2z6g_A B-catenin; FULL-length, 46.0 81 0.0028 33.5 10.1 116 186-315 161-287 (780)
130 3ip4_C Aspartyl/glutamyl-tRNA( 45.2 43 0.0015 26.4 5.9 37 1-38 1-37 (100)
131 3gs3_A Symplekin, LD45768P; he 44.8 1.9E+02 0.0065 26.6 14.1 133 228-380 31-173 (257)
132 1jdh_A Beta-catenin; beta-cate 44.1 50 0.0017 32.2 7.5 94 226-334 240-338 (529)
133 3kfu_G Glutamyl-tRNA(Gln) amid 43.6 48 0.0017 25.7 5.9 36 1-38 4-39 (92)
134 2r44_A Uncharacterized protein 42.5 88 0.003 28.9 8.7 48 20-67 226-296 (331)
135 1jr3_A DNA polymerase III subu 42.4 34 0.0012 32.0 5.8 57 8-66 186-242 (373)
136 3a6p_A Exportin-5; exportin-5, 39.7 4.4E+02 0.015 29.4 18.8 89 201-295 345-455 (1204)
137 3opb_A SWI5-dependent HO expre 39.1 3E+02 0.01 29.6 13.0 141 227-380 471-635 (778)
138 2qby_B CDC6 homolog 3, cell di 38.7 66 0.0022 30.2 7.2 63 4-68 197-270 (384)
139 4b4t_I 26S protease regulatory 38.7 29 0.00099 34.9 4.8 42 26-67 377-422 (437)
140 3ibv_A Exportin-T; karyopherin 37.8 1.4E+02 0.0049 32.7 10.6 182 167-358 371-588 (980)
141 1sxj_B Activator 1 37 kDa subu 36.9 66 0.0023 29.2 6.7 55 9-66 175-229 (323)
142 1fnn_A CDC6P, cell division co 36.8 80 0.0027 29.5 7.5 49 20-68 214-274 (389)
143 2vgl_A Adaptor protein complex 36.7 1.3E+02 0.0043 31.2 9.5 143 173-339 367-513 (621)
144 3a1y_A 50S ribosomal protein P 36.7 47 0.0016 23.7 4.4 41 3-44 16-57 (58)
145 1lv7_A FTSH; alpha/beta domain 36.7 35 0.0012 30.5 4.7 43 26-68 206-252 (257)
146 2chq_A Replication factor C sm 36.5 38 0.0013 30.8 5.0 55 8-65 169-223 (319)
147 3u0r_A Apoptosis inhibitor 5; 35.4 1.3E+02 0.0046 30.6 9.0 146 160-313 162-321 (507)
148 2ly8_A Budding yeast chaperone 33.5 70 0.0024 26.4 5.5 46 9-54 11-60 (121)
149 1xqr_A HSPBP1 protein; armadil 33.2 3E+02 0.01 25.5 18.4 116 207-342 124-248 (296)
150 3ff5_A PEX14P, peroxisomal bio 32.7 34 0.0012 24.3 3.0 30 38-67 10-53 (54)
151 1ixz_A ATP-dependent metallopr 32.4 37 0.0013 30.3 4.0 46 21-66 204-254 (254)
152 3nbx_X ATPase RAVA; AAA+ ATPas 31.2 1.2E+02 0.004 30.8 7.9 59 4-62 209-280 (500)
153 4b4t_J 26S protease regulatory 30.9 40 0.0014 33.5 4.3 42 26-67 343-388 (405)
154 3pfi_A Holliday junction ATP-d 30.8 98 0.0034 28.6 6.9 61 9-70 193-256 (338)
155 1iy2_A ATP-dependent metallopr 30.3 42 0.0014 30.5 4.1 47 20-66 227-278 (278)
156 1r4v_A Hypothetical protein AQ 28.9 73 0.0025 27.8 5.0 96 1-118 24-121 (171)
157 1hqc_A RUVB; extended AAA-ATPa 28.8 62 0.0021 29.6 5.1 60 9-69 177-239 (324)
158 3ul1_B Importin subunit alpha- 28.8 4.3E+02 0.015 26.0 15.0 139 176-333 59-217 (510)
159 3d8b_A Fidgetin-like protein 1 28.3 92 0.0031 29.6 6.3 59 9-68 260-334 (357)
160 4b4t_H 26S protease regulatory 27.6 50 0.0017 33.5 4.4 41 27-67 405-449 (467)
161 3bl2_A V-BCL-2; protein-protei 26.9 94 0.0032 25.1 4.9 44 299-347 61-104 (131)
162 4b4t_L 26S protease subunit RP 26.9 52 0.0018 33.0 4.3 42 26-67 376-421 (437)
163 4ady_A RPN2, 26S proteasome re 26.8 5.2E+02 0.018 28.5 12.5 64 274-337 658-723 (963)
164 3a6p_A Exportin-5; exportin-5, 26.5 7E+02 0.024 27.8 14.0 116 230-358 510-635 (1204)
165 2z4s_A Chromosomal replication 26.4 58 0.002 32.2 4.6 58 9-68 272-332 (440)
166 3now_A UNC-45 protein, SD10334 26.3 3.5E+02 0.012 29.2 11.0 154 206-380 494-652 (810)
167 1l8q_A Chromosomal replication 26.1 43 0.0015 31.1 3.4 57 9-67 175-239 (324)
168 3b9p_A CG5977-PA, isoform A; A 25.9 97 0.0033 28.0 5.8 57 10-67 199-271 (297)
169 4b4t_M 26S protease regulatory 25.8 56 0.0019 32.7 4.4 43 26-68 376-422 (434)
170 3mse_B Calcium-dependent prote 25.3 1.3E+02 0.0046 24.7 6.2 68 4-71 2-71 (180)
171 3fes_A ATP-dependent CLP endop 25.2 75 0.0026 26.1 4.4 57 8-66 47-115 (145)
172 3tjz_B Coatomer subunit gamma; 25.1 1.4E+02 0.0047 29.0 6.9 157 167-351 131-297 (355)
173 2z6h_A Catenin beta-1, beta-ca 25.0 5.4E+02 0.019 25.9 12.2 98 226-334 237-335 (644)
174 3mn2_A Probable ARAC family tr 25.0 1.9E+02 0.0067 21.9 6.7 61 8-80 20-85 (108)
175 2w84_A Peroxisomal membrane pr 24.6 41 0.0014 25.2 2.3 31 39-69 16-60 (70)
176 3oc3_A Helicase MOT1, MOT1; re 24.1 1.2E+02 0.0042 32.0 6.5 84 260-357 223-308 (800)
177 3skq_A Mitochondrial distribut 24.0 2.6E+02 0.0091 25.8 8.2 67 4-73 98-164 (249)
178 4b4t_K 26S protease regulatory 23.8 64 0.0022 32.2 4.3 42 26-67 368-413 (428)
179 3fh2_A Probable ATP-dependent 23.3 86 0.0029 25.7 4.4 57 8-66 46-115 (146)
180 1iqp_A RFCS; clamp loader, ext 23.3 74 0.0025 28.9 4.4 54 9-65 178-231 (327)
181 2npp_B PP2A, B subunit, serine 22.5 2E+02 0.0067 28.9 7.6 98 169-292 298-399 (449)
182 3f8t_A Predicted ATPase involv 22.5 1.8E+02 0.0061 29.8 7.3 66 3-68 393-483 (506)
183 3cuq_A Vacuolar-sorting protei 22.4 3.2E+02 0.011 24.9 8.4 16 54-69 113-128 (234)
184 3fh2_A Probable ATP-dependent 21.0 1E+02 0.0035 25.2 4.4 35 33-67 7-41 (146)
185 1te4_A Conserved protein MTH18 21.0 1E+02 0.0035 24.3 4.3 57 255-332 74-130 (131)
186 3f9v_A Minichromosome maintena 20.9 36 0.0012 35.3 1.9 49 20-68 521-587 (595)
187 1vdy_A Hypothetical protein (R 20.6 2E+02 0.007 24.0 6.2 94 284-380 29-130 (140)
188 1u9p_A PARC; unknown function; 20.6 1.2E+02 0.0042 24.9 4.6 47 7-54 31-88 (120)
189 2kru_A Light-independent proto 20.3 1E+02 0.0035 22.4 3.7 46 22-68 7-53 (63)
190 3eie_A Vacuolar protein sortin 20.2 58 0.002 30.4 3.0 38 12-50 196-237 (322)
No 1
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=100.00 E-value=1.3e-60 Score=437.65 Aligned_cols=182 Identities=37% Similarity=0.638 Sum_probs=176.8
Q ss_pred cccCcHHHHHHHHHHHHHhhcCCchHHHHHHHHhhhhcCCcccchhhHHHHHHHHHhhccCChHHHHHHHHHHHHhhcCC
Q 016189 165 KHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNP 244 (393)
Q Consensus 165 ~h~LS~Elq~yf~~It~a~~~~~~~~~~~~aL~sL~tD~gL~~LlPy~~~fi~e~v~~nl~nl~~L~~ll~~v~ALl~N~ 244 (393)
||+||+|+|+||++||++|++ ..|++||++|++|||||||+|||++||+++|++|++|+..|.++|+|++||++||
T Consensus 2 kh~LS~Elq~yf~~It~a~~~----~~r~~aL~sL~~D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~ 77 (196)
T 4atg_A 2 SHMLPKELQLYFDKILSMIKS----DMKDIAIECLEKESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNK 77 (196)
T ss_dssp GGGSCHHHHHHHHHHHHHHTS----TTHHHHHHHHHHCSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCT
T ss_pred CcccCHHHHHHHHHHHHHHHh----HHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCC
Confidence 699999999999999999997 4588999999999999999999999999999999999999999999999999999
Q ss_pred CcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHhcCCCCCchhHh
Q 016189 245 HIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHY 324 (393)
Q Consensus 245 ~l~ie~YlHqLlpslltcll~k~l~~~~~~~h~~LR~~AA~lL~~I~~~~~~~y~~L~~Ri~~~l~k~l~d~~~~l~t~Y 324 (393)
+++||||+|||+|++|||+|++++|++ +|||+||++|+.||++||++|++|++||+++|.++|+||++|+++||
T Consensus 78 ~l~lepYlH~LipsvLtCll~k~l~~~------~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~Y 151 (196)
T 4atg_A 78 HVFIDPYLHQILPSLLTCVIGKSIVDD------DVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQY 151 (196)
T ss_dssp TCCCGGGHHHHHHHHHHHHHCTTCCCH------HHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhcccCHH------HHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHH
Confidence 999999999999999999999999875 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCHHhHHHhcccchHHHHHhhhHh
Q 016189 325 GAIQGLAALGPSVVHLLILPNLELYLKFLEPE 356 (393)
Q Consensus 325 GAi~GL~~lG~~~vr~~ilP~l~~~~~~l~~~ 356 (393)
||++||++||++|||.+|+|+++.|++.++..
T Consensus 152 GAi~GL~~lG~~~vr~~llP~l~~~~~~~~~~ 183 (196)
T 4atg_A 152 GALYCLSILSKNVVNTVIREHAEEYKRTIGKK 183 (196)
T ss_dssp HHHHHHHHHCHHHHHTHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHHhHHHHHHHhhhcCHHHHHHHHHHH
Confidence 99999999999999999999999999988744
No 2
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=99.92 E-value=2.8e-25 Score=170.63 Aligned_cols=67 Identities=43% Similarity=0.610 Sum_probs=65.3
Q ss_pred CCCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhh
Q 016189 1 MSIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (393)
Q Consensus 1 ms~~~~~~i~~iaes~G~~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~ 67 (393)
||+||.++|+++||++|++++|||+++.||+|||||++||+|+|+|||+|+||++||++|||.||+.
T Consensus 4 ~s~lp~~~v~~iaes~Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk~ 70 (70)
T 1taf_B 4 GSSISAESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKV 70 (70)
T ss_dssp SCCCCHHHHHHHHHHTTCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC-
T ss_pred cccCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHcC
Confidence 8999999999999999999999999999999999999999999999999999999999999999974
No 3
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.78 E-value=1.3e-19 Score=144.77 Aligned_cols=75 Identities=25% Similarity=0.349 Sum_probs=71.9
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhhcCCCCcccCCC
Q 016189 3 IVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFAS 78 (393)
Q Consensus 3 ~~~~~~i~~iaes~G~~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~~nieplyGy~s 78 (393)
.+|+++|+++|++.|+.++|+++++.|++++++++++|+++|.+||+|+||+|+|++||..||+.++ +|+|||.+
T Consensus 10 ~ip~~~I~Riar~~Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g-~~lYgf~~ 84 (84)
T 2hue_C 10 GITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQG-RTLYGFGG 84 (84)
T ss_dssp SSCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTC-EEEESCC-
T ss_pred CCCHHHHHHHHHHcCchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcC-CCCCCCCC
Confidence 5899999999999999999999999999999999999999999999999999999999999999886 79999963
No 4
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.76 E-value=8.2e-19 Score=144.88 Aligned_cols=75 Identities=23% Similarity=0.350 Sum_probs=72.3
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhhcCCCCcccCCC
Q 016189 3 IVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFAS 78 (393)
Q Consensus 3 ~~~~~~i~~iaes~G~~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~~nieplyGy~s 78 (393)
.||+++|+++|++.|+.++|++++++|++++|+++++|++||.+||+|++|+|+|++||..||+.++ +|+|||.+
T Consensus 28 ~ip~~~I~Rlar~~Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g-~~lYGf~~ 102 (102)
T 1id3_B 28 GITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG-RTLYGFGG 102 (102)
T ss_dssp GSCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT-CCEESSCC
T ss_pred CCCHHHHHHHHHHcCchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcC-CCCCCCCC
Confidence 4899999999999999999999999999999999999999999999999999999999999999986 79999963
No 5
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.71 E-value=9.2e-18 Score=138.95 Aligned_cols=75 Identities=24% Similarity=0.350 Sum_probs=65.3
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhhcCCCCcccCCC
Q 016189 3 IVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFAS 78 (393)
Q Consensus 3 ~~~~~~i~~iaes~G~~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~~nieplyGy~s 78 (393)
-||.++|+++|++.|+.++|++++..|++++|+++.+|+++|.+||+|+||+|+|++||..||+.++ +|+|||.+
T Consensus 29 gip~~~I~Rlar~~G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g-~~lYGf~~ 103 (103)
T 2yfw_B 29 GITKPAIRRLARRGGVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQG-RTLYGFGG 103 (103)
T ss_dssp -CCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC---------
T ss_pred cCCHHHHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcC-CCCcCCCC
Confidence 3899999999999999999999999999999999999999999999999999999999999999998 89999963
No 6
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.71 E-value=1.2e-17 Score=138.35 Aligned_cols=75 Identities=25% Similarity=0.349 Sum_probs=72.1
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhhcCCCCcccCCC
Q 016189 3 IVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFAS 78 (393)
Q Consensus 3 ~~~~~~i~~iaes~G~~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~~nieplyGy~s 78 (393)
.||.++|+++|++.|+.++|++++..|++++|+++.+|+++|.+||+|+||+|+|++||..||+.++ +|+|||.+
T Consensus 29 gip~~~I~Rlar~~G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g-~~lYGf~~ 103 (103)
T 1tzy_D 29 GITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQG-RTLYGFGG 103 (103)
T ss_dssp GSCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT-CEEESCCC
T ss_pred cCCHHHHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcC-CCCcCCCC
Confidence 3899999999999999999999999999999999999999999999999999999999999999997 79999963
No 7
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.37 E-value=1.5e-12 Score=100.15 Aligned_cols=67 Identities=25% Similarity=0.359 Sum_probs=64.3
Q ss_pred CCCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhh
Q 016189 1 MSIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (393)
Q Consensus 1 ms~~~~~~i~~iaes~G~~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~ 67 (393)
|+.+|..+|++++++.|..++|+++...|++.++.++.+|+++|..|++|+||+|++++||..|++.
T Consensus 4 ~~~lp~a~v~Rl~r~~g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~~ 70 (70)
T 1ku5_A 4 MGELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIKS 70 (70)
T ss_dssp -CCSCHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHTC
T ss_pred cccCChHHHHHHHHHcCcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHC
Confidence 5789999999999999999999999999999999999999999999999999999999999999863
No 8
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=99.28 E-value=4.3e-12 Score=106.98 Aligned_cols=63 Identities=21% Similarity=0.326 Sum_probs=60.7
Q ss_pred HHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhhcCCCCcccCC
Q 016189 14 QSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFA 77 (393)
Q Consensus 14 es~G~~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~~nieplyGy~ 77 (393)
...|++++|+++++++.+.++.++.+|+++|+++++|+||||+|++||..|||..|. |+|||+
T Consensus 58 ~~gGvkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~-~lygf~ 120 (121)
T 2ly8_A 58 VPRGSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR-TLYGFG 120 (121)
T ss_dssp CCCCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTC-GGGGCC
T ss_pred CccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCC-cCCCCC
Confidence 347999999999999999999999999999999999999999999999999999999 899996
No 9
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=99.19 E-value=3.2e-12 Score=118.46 Aligned_cols=68 Identities=22% Similarity=0.309 Sum_probs=65.6
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhhcCCCCcccCC
Q 016189 9 IEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFA 77 (393)
Q Consensus 9 i~~iaes~G~~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~~nieplyGy~ 77 (393)
++++|++.|++++|+++++++++.++.++++|+++|++|++|++|||+|++||..||+..+ .|+|||.
T Consensus 167 ~~RlaRrgGVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~g-r~lYGf~ 234 (235)
T 2l5a_A 167 DEEDGDKGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG-RTLYGFG 234 (235)
T ss_dssp CCTTSCCTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH-HHHTTCC
T ss_pred HHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcC-CccccCC
Confidence 4578999999999999999999999999999999999999999999999999999999999 8999996
No 10
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.10 E-value=1.5e-10 Score=101.75 Aligned_cols=72 Identities=19% Similarity=0.163 Sum_probs=68.0
Q ss_pred CCCCChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhhcCCCC
Q 016189 1 MSIVPKETIEVIAQSI-GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEP 72 (393)
Q Consensus 1 ms~~~~~~i~~iaes~-G~~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~~niep 72 (393)
|..+|..+|.++++.. |..++|+++...|++.++.++..|..+|.++++|+||||++.+||..|+..+|.+.
T Consensus 2 ~~~LP~a~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~~~ 74 (154)
T 1f1e_A 2 AVELPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEG 74 (154)
T ss_dssp --CCCHHHHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCTT
T ss_pred cccCCccHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhccccc
Confidence 6789999999999999 99999999999999999999999999999999999999999999999998888873
No 11
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=99.04 E-value=4.1e-10 Score=94.11 Aligned_cols=67 Identities=15% Similarity=0.124 Sum_probs=62.5
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhhcC
Q 016189 3 IVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRN 69 (393)
Q Consensus 3 ~~~~~~i~~iaes~G~~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~~n 69 (393)
.+|+..|+++++..|..++|+++..+|.+.++.++.+|+.+|..|++|+||+|++++||..|++..+
T Consensus 7 ~lP~a~I~Ri~r~~g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g 73 (111)
T 3b0c_T 7 EIASSLIKQIFSHYVKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQG 73 (111)
T ss_dssp ---CHHHHHHHHHHHCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCC
Confidence 5899999999999999999999999999999999999999999999999999999999999999864
No 12
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.00 E-value=1.5e-09 Score=82.73 Aligned_cols=67 Identities=31% Similarity=0.385 Sum_probs=64.4
Q ss_pred CCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhhc
Q 016189 2 SIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (393)
Q Consensus 2 s~~~~~~i~~iaes~G~~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~~ 68 (393)
+.+|..+|++++++.|..+++.++...|++.+|.++..+..+|..++.|+||+|++++||..|++.+
T Consensus 1 ~~lP~a~v~Ri~k~~~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 1 GELPIAPIGRIIKNAGAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp CCSCHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred CCCCccHHHHHHhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 3689999999999999999999999999999999999999999999999999999999999999865
No 13
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.94 E-value=2.9e-09 Score=81.14 Aligned_cols=62 Identities=21% Similarity=0.218 Sum_probs=59.4
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhhc
Q 016189 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (393)
Q Consensus 7 ~~i~~iaes~G~~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~~ 68 (393)
..|.+|.++.|+++.++++...|.+.++....+|+++|..|++|++|++++.+||..|++.+
T Consensus 5 ~~i~~iLk~~G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~ 66 (68)
T 1taf_A 5 QVIMSILKELNVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEVT 66 (68)
T ss_dssp HHHHHHHHHTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhc
Confidence 46889999999999999999999999999999999999999999999999999999999864
No 14
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.91 E-value=2.8e-09 Score=93.74 Aligned_cols=66 Identities=18% Similarity=0.229 Sum_probs=63.8
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhhc
Q 016189 3 IVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (393)
Q Consensus 3 ~~~~~~i~~iaes~G~~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~~ 68 (393)
.+|..+|.++++..|..++|+++...|++.+|+++.+|..+|.++++|+||||+|++||..|++..
T Consensus 82 ~lP~a~V~Ri~k~~g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~ 147 (154)
T 1f1e_A 82 LFGRATVRRILKRAGIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYS 147 (154)
T ss_dssp CCCHHHHHHHHHHTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred cCCccHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 589999999999999999999999999999999999999999999999999999999999999753
No 15
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=98.61 E-value=1.5e-07 Score=76.04 Aligned_cols=68 Identities=15% Similarity=0.130 Sum_probs=63.6
Q ss_pred CCChHHHHHHHHHcCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhhcCC
Q 016189 3 IVPKETIEVIAQSIGV--YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (393)
Q Consensus 3 ~~~~~~i~~iaes~G~--~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~~ni 70 (393)
.+|..+|++|+++.|- .++|.|+...|++.+|.++..+..+|..++.|+||+|++.+||..|++.++.
T Consensus 8 ~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~F 77 (93)
T 1n1j_A 8 YLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGF 77 (93)
T ss_dssp CCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTTC
T ss_pred cCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCc
Confidence 5899999999999975 6899999999999999999999999999999999999999999999985544
No 16
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=98.58 E-value=5.1e-08 Score=81.04 Aligned_cols=60 Identities=17% Similarity=0.230 Sum_probs=55.6
Q ss_pred HHHHHHHHcCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhh
Q 016189 8 TIEVIAQSIGVYN---LSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (393)
Q Consensus 8 ~i~~iaes~G~~~---ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~ 67 (393)
+|.+|+++.|.++ +|+++...|++-++..+.+|..|+..|++|+||+|++++||..+++.
T Consensus 32 ~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr 94 (113)
T 4dra_A 32 TVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARR 94 (113)
T ss_dssp HHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHh
Confidence 5677888887766 99999999999999999999999999999999999999999999875
No 17
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=98.57 E-value=1.5e-07 Score=73.18 Aligned_cols=66 Identities=14% Similarity=0.159 Sum_probs=61.9
Q ss_pred CCChHHHHHHHH-HcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhhc
Q 016189 3 IVPKETIEVIAQ-SIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (393)
Q Consensus 3 ~~~~~~i~~iae-s~G~~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~~ 68 (393)
.+|..+|++|.+ ..+-.++|.|+...+.+.++.++..|..+|.+.++|.+|+|++.+||..|++.+
T Consensus 4 ~LP~A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~l 70 (76)
T 3b0c_W 4 TVPRGTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVI 70 (76)
T ss_dssp CCCHHHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred cccccHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 589999999999 558778999999999999999999999999999999999999999999999763
No 18
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.55 E-value=8.2e-08 Score=79.35 Aligned_cols=60 Identities=18% Similarity=0.199 Sum_probs=55.8
Q ss_pred HHHHHHHHcCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhh
Q 016189 8 TIEVIAQSIGV---YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (393)
Q Consensus 8 ~i~~iaes~G~---~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~ 67 (393)
+|.+|++..|. .++++++...|++-++..+.+|..+|..|++|+||++++++||..|++.
T Consensus 24 ~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rr 86 (107)
T 3b0b_B 24 TTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARR 86 (107)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHh
Confidence 47778888877 5899999999999999999999999999999999999999999999875
No 19
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=98.48 E-value=5.4e-07 Score=70.13 Aligned_cols=70 Identities=20% Similarity=0.340 Sum_probs=65.1
Q ss_pred CCCCChHHHHHHHHHc-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhhcCC
Q 016189 1 MSIVPKETIEVIAQSI-----GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (393)
Q Consensus 1 ms~~~~~~i~~iaes~-----G~~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~~ni 70 (393)
|-.+|+.++.++.+.+ |-.+.+.+|..+|.+..|..+-++.++|..++.|+||.|+++.||..|.+.+|.
T Consensus 1 ~lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg~ 75 (77)
T 2hue_B 1 MALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 75 (77)
T ss_dssp -CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTC
T ss_pred CCccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhCc
Confidence 6679999999988888 878999999999999999999999999999999999999999999999988764
No 20
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=98.43 E-value=6.5e-07 Score=71.74 Aligned_cols=58 Identities=19% Similarity=0.183 Sum_probs=52.0
Q ss_pred HHHHHHHc----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhh
Q 016189 9 IEVIAQSI----GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (393)
Q Consensus 9 i~~iaes~----G~~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~ 67 (393)
|..|+++. |+ ++|+++...|++-++..+.++.+++..|++|+||++++++||..+++.
T Consensus 18 V~ki~~e~~~~~g~-~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rr 79 (90)
T 3v9r_A 18 VEERLQQVLSSEDI-KYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRK 79 (90)
T ss_dssp HHHHHHHHSCSSCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHhcCc-eeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 45566655 55 599999999999999999999999999999999999999999999875
No 21
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=98.40 E-value=9.3e-07 Score=69.56 Aligned_cols=71 Identities=27% Similarity=0.328 Sum_probs=63.9
Q ss_pred CCCCChHHHHHHHHHcC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhhcCCC
Q 016189 1 MSIVPKETIEVIAQSIG-------VYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVE 71 (393)
Q Consensus 1 ms~~~~~~i~~iaes~G-------~~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~~nie 71 (393)
|-.+|+.+..++.+.++ -.+.+.+|..+|.+..|.++-.+.++|..++.|+||.|+++.||..|.+.++..
T Consensus 1 ~lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg~~ 78 (82)
T 3nqj_A 1 MLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLE 78 (82)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC--
T ss_pred CCCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHcccc
Confidence 77889999888777776 458999999999999999999999999999999999999999999999998764
No 22
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=98.28 E-value=7.3e-07 Score=76.51 Aligned_cols=58 Identities=22% Similarity=0.275 Sum_probs=51.6
Q ss_pred HHHHHHHc----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhh
Q 016189 9 IEVIAQSI----GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (393)
Q Consensus 9 i~~iaes~----G~~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~ 67 (393)
|..|++.. |+ ++|+++...|++-++..+.+|..|+..|++|+||+|++++||..+++.
T Consensus 25 VgkIvee~~~~~~~-~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rr 86 (140)
T 3vh5_A 25 TGALAQDVAEDKGV-LFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARR 86 (140)
T ss_dssp HHHHHHHHHHHHTC-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 44555544 55 499999999999999999999999999999999999999999999975
No 23
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=98.19 E-value=5.1e-06 Score=74.52 Aligned_cols=69 Identities=13% Similarity=0.137 Sum_probs=64.8
Q ss_pred CCChHHHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhhcCCC
Q 016189 3 IVPKETIEVIAQSIGV-YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVE 71 (393)
Q Consensus 3 ~~~~~~i~~iaes~G~-~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~~nie 71 (393)
.+|..+|.+|.++.+- .+++.|+...|++.++.++..|..+|.+++.|.+|+||+.+||-.||+.++.+
T Consensus 15 ~LP~A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~LgF~ 84 (179)
T 1jfi_B 15 TIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFG 84 (179)
T ss_dssp CCCHHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTG
T ss_pred hcCHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcChH
Confidence 5899999999999973 68999999999999999999999999999999999999999999999977665
No 24
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=98.16 E-value=4.6e-06 Score=71.16 Aligned_cols=69 Identities=14% Similarity=0.139 Sum_probs=63.0
Q ss_pred CCChHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhhcCCC
Q 016189 3 IVPKETIEVIAQSIG--VYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVE 71 (393)
Q Consensus 3 ~~~~~~i~~iaes~G--~~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~~nie 71 (393)
.+|...|++|.+..+ ..++|.|+...|++.+|.++..|..+|...+.|.+|+||+.+||..|++.++..
T Consensus 9 ~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~ 79 (128)
T 2byk_B 9 NLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFE 79 (128)
T ss_dssp --CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCT
T ss_pred cCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcH
Confidence 489999999999765 678999999999999999999999999999999999999999999999987644
No 25
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=98.09 E-value=8.3e-06 Score=66.29 Aligned_cols=66 Identities=18% Similarity=0.188 Sum_probs=60.7
Q ss_pred CCCChHHHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhh
Q 016189 2 SIVPKETIEVIAQSIGV-YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (393)
Q Consensus 2 s~~~~~~i~~iaes~G~-~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~ 67 (393)
..+|...|++|.++-+- .++|.++...++..+|+++.++.++|...+++.||++++.+||..|++.
T Consensus 18 ~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~ 84 (97)
T 1n1j_B 18 QELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITK 84 (97)
T ss_dssp --CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred CcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhc
Confidence 35899999999999865 6799999999999999999999999999999999999999999999864
No 26
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=97.91 E-value=2.5e-05 Score=63.69 Aligned_cols=65 Identities=14% Similarity=0.196 Sum_probs=57.4
Q ss_pred CCChHHHHHHHHHcC--------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhh
Q 016189 3 IVPKETIEVIAQSIG--------VYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (393)
Q Consensus 3 ~~~~~~i~~iaes~G--------~~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~ 67 (393)
.||+.+..++.+.+| -.+.+.+|..+|.+..|..+-++.++|..++.|+||.|+++.||..|.+.
T Consensus 27 lIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ri 99 (100)
T 2yfv_A 27 LISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARRI 99 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHC
T ss_pred hhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHh
Confidence 478888888777776 45789999999999999999999999999999999999999999999864
No 27
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=97.90 E-value=3e-05 Score=65.69 Aligned_cols=64 Identities=17% Similarity=0.211 Sum_probs=61.3
Q ss_pred CCChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhh
Q 016189 3 IVPKETIEVIAQSI-GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (393)
Q Consensus 3 ~~~~~~i~~iaes~-G~~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~ 66 (393)
.||...|.++.+.. +..+++++|...|+.-+||...||++.|.+.++|.+|+++|++||..|.+
T Consensus 23 ~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 87 (123)
T 2nqb_C 23 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 87 (123)
T ss_dssp SSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred eccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHh
Confidence 58999999999986 89999999999999999999999999999999999999999999999986
No 28
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=97.88 E-value=3e-05 Score=65.41 Aligned_cols=64 Identities=19% Similarity=0.258 Sum_probs=61.3
Q ss_pred CCChHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhh
Q 016189 3 IVPKETIEVIAQSIG-VYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (393)
Q Consensus 3 ~~~~~~i~~iaes~G-~~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~ 66 (393)
.||...|.++.+..+ ..+++++|...|+.-+||...||++.|.+.++|.||+++|++||..|.+
T Consensus 22 qfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~ 86 (120)
T 2f8n_G 22 IFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA 86 (120)
T ss_dssp SSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 589999999999998 7899999999999999999999999999999999999999999999986
No 29
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=97.87 E-value=2.6e-05 Score=67.08 Aligned_cols=69 Identities=26% Similarity=0.327 Sum_probs=59.0
Q ss_pred CCChHHHHHHHHHcC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhhcCCC
Q 016189 3 IVPKETIEVIAQSIG-------VYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVE 71 (393)
Q Consensus 3 ~~~~~~i~~iaes~G-------~~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~~nie 71 (393)
.|++.++.++.+.++ -.+.+.+|..+|.+..|.++-.+.++|..++.|+||.||++.||..|.+.++..
T Consensus 61 LIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrirg~~ 136 (140)
T 3nqu_A 61 LIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLE 136 (140)
T ss_dssp CSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC--
T ss_pred ccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhcccc
Confidence 356666666655555 458999999999999999999999999999999999999999999999998875
No 30
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=97.84 E-value=4.8e-05 Score=65.31 Aligned_cols=68 Identities=19% Similarity=0.320 Sum_probs=62.2
Q ss_pred CCChHHHHHHHHHc-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhhcCC
Q 016189 3 IVPKETIEVIAQSI-----GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (393)
Q Consensus 3 ~~~~~~i~~iaes~-----G~~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~~ni 70 (393)
.||+.++.++.+.+ |-.+++.+|..+|.+..|..+-++.++|..++.|+||.||++.||..|.+.++.
T Consensus 62 LIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rirg~ 134 (136)
T 1tzy_C 62 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134 (136)
T ss_dssp CSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTC
T ss_pred hhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHhCc
Confidence 47888888877777 777999999999999999999999999999999999999999999999988764
No 31
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=97.83 E-value=4.5e-05 Score=65.09 Aligned_cols=64 Identities=17% Similarity=0.212 Sum_probs=61.2
Q ss_pred CCChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhh
Q 016189 3 IVPKETIEVIAQSI-GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (393)
Q Consensus 3 ~~~~~~i~~iaes~-G~~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~ 66 (393)
.||...|.++.+.. +..++++++...|+.-+||...||++.|.+.++|.+|++++++||..|.+
T Consensus 25 qfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 89 (129)
T 1tzy_A 25 QFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (129)
T ss_dssp SSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred eccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 58999999999985 99999999999999999999999999999999999999999999999986
No 32
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=97.80 E-value=4.2e-05 Score=66.64 Aligned_cols=65 Identities=17% Similarity=0.188 Sum_probs=61.7
Q ss_pred CCChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhh
Q 016189 3 IVPKETIEVIAQSI-GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (393)
Q Consensus 3 ~~~~~~i~~iaes~-G~~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~ 67 (393)
.||...|.++.+.. +..+++++|...|+.-+||...||++.|.+.+++.+|++++++||..|.+.
T Consensus 44 qFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~n 109 (149)
T 2f8n_K 44 QFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 109 (149)
T ss_dssp SSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred eccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhc
Confidence 58999999999986 999999999999999999999999999999999999999999999999863
No 33
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=97.77 E-value=3e-05 Score=63.14 Aligned_cols=65 Identities=14% Similarity=0.265 Sum_probs=57.5
Q ss_pred CCChHHHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhh
Q 016189 3 IVPKETIEVIAQSIGV-YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (393)
Q Consensus 3 ~~~~~~i~~iaes~G~-~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~ 67 (393)
.+|..-|++|.++-+- .++|.++.-.++.-+||++.++++.|.+.+++.||++|+.+||..|.+.
T Consensus 11 ~fPvaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~ 76 (98)
T 1jfi_A 11 RFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIEL 76 (98)
T ss_dssp CCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC-
T ss_pred CCChHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhc
Confidence 5899999999998765 6899999999999999999999999999999999999999999999864
No 34
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=97.77 E-value=3.8e-05 Score=66.94 Aligned_cols=68 Identities=25% Similarity=0.314 Sum_probs=59.9
Q ss_pred CCChHHHHHHHHHcC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhhcCC
Q 016189 3 IVPKETIEVIAQSIG-------VYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (393)
Q Consensus 3 ~~~~~~i~~iaes~G-------~~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~~ni 70 (393)
.|++.++.++.+.++ -.+.+.+|..+|.+..|.++-.+.++|..++.|+||.||++.||..|.+.++.
T Consensus 77 LIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrIrg~ 151 (156)
T 3r45_A 77 LIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGL 151 (156)
T ss_dssp CSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHccc
Confidence 467777777666665 34789999999999999999999999999999999999999999999988754
No 35
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=97.75 E-value=4.6e-05 Score=65.17 Aligned_cols=64 Identities=17% Similarity=0.224 Sum_probs=61.2
Q ss_pred CCChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhh
Q 016189 3 IVPKETIEVIAQSI-GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (393)
Q Consensus 3 ~~~~~~i~~iaes~-G~~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~ 66 (393)
.||...|.++.+.. +..+++++|...|+.-+||...||++.|.+.++|.+|++++++||..|.+
T Consensus 25 qfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~ 89 (131)
T 1id3_C 25 TFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (131)
T ss_dssp SSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 58999999999985 89999999999999999999999999999999999999999999999986
No 36
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=97.62 E-value=0.00013 Score=61.38 Aligned_cols=65 Identities=18% Similarity=0.256 Sum_probs=60.0
Q ss_pred CCChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhh
Q 016189 3 IVPKETIEVIAQSI-GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (393)
Q Consensus 3 ~~~~~~i~~iaes~-G~~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~ 67 (393)
.+|..-|++|.++- .+..++.+|...++..+|+++.++..+|...++..||++++.+||..|++.
T Consensus 41 ~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~ 106 (119)
T 4g92_C 41 QLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSK 106 (119)
T ss_dssp SSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred CCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhc
Confidence 48999999999863 456799999999999999999999999999999999999999999999964
No 37
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=97.60 E-value=0.00011 Score=62.52 Aligned_cols=65 Identities=17% Similarity=0.120 Sum_probs=60.9
Q ss_pred CCChHHHHHHHHHcC-C-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhh
Q 016189 3 IVPKETIEVIAQSIG-V-YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (393)
Q Consensus 3 ~~~~~~i~~iaes~G-~-~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~ 67 (393)
.||..-|.++.+..+ . .+++.+|...|+.-+||...||++.|...++|.||+++|++||..|++.
T Consensus 27 qfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~n 93 (128)
T 1f66_C 27 QFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 93 (128)
T ss_dssp SSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred cCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 489999999999998 3 4899999999999999999999999999999999999999999999863
No 38
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.56 E-value=0.0029 Score=62.07 Aligned_cols=127 Identities=11% Similarity=0.058 Sum_probs=91.0
Q ss_pred ccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHhcCCCCCchhHhHH
Q 016189 247 HIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGA 326 (393)
Q Consensus 247 ~ie~YlHqLlpslltcll~k~l~~~~~~~h~~LR~~AA~lL~~I~~~~~~~y~~L~~Ri~~~l~k~l~d~~~~l~t~YGA 326 (393)
.+++|+..++|.++.++... .....++.|..|..|+.+|..++..++. .+-+.+...+.+.+.| .....+++|
T Consensus 314 ~~~~~~~~l~p~l~~~l~~~--d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~~~~~~~l~~~l~~--~~~~~r~aa 386 (462)
T 1ibr_B 314 YAKGALQYLVPILTQTLTKQ--DENDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKN--PDWRYRDAA 386 (462)
T ss_dssp HHHHHHHHHHHHHHHHTTCC--CSSCCTTCCSHHHHHHHHHHHHHHHTTT---THHHHHHHHHHHHTTC--SSHHHHHHH
T ss_pred HHHHHhhhccHHHHHHHHhc--ccccccccchHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 34678889999887775322 1112357899999999999999999983 5667777778777764 468889999
Q ss_pred HHHHHhhCHHhHHHhcccchHHHHHhhhHhHhhhhhhhhhHHHHHHHHHhHhhhhhh
Q 016189 327 IQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQVDFF 383 (393)
Q Consensus 327 i~GL~~lG~~~vr~~ilP~l~~~~~~l~~~l~~~~~~~~~~~~~a~~v~~~l~~a~~ 383 (393)
+.+|.+++...-...+-|+++.+...|-+.+.+ .+...|..|-.+.|.+....+
T Consensus 387 l~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d---~~~~Vr~~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 387 VMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD---PSVVVRDTAAWTVGRICELLP 440 (462)
T ss_dssp HHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGC---SCHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHhcc
Confidence 999999975322223446666777777666643 345678888888888776554
No 39
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=97.43 E-value=0.00031 Score=63.80 Aligned_cols=64 Identities=17% Similarity=0.188 Sum_probs=60.1
Q ss_pred CCChHHHHHHHHHc-CC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhh
Q 016189 3 IVPKETIEVIAQSI-GV-YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (393)
Q Consensus 3 ~~~~~~i~~iaes~-G~-~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~ 66 (393)
.||...|.++.+.. +. .+++++++..|+.-+||...||++.|.+.++|.||++++++||..|.+
T Consensus 105 ~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~ 170 (192)
T 2jss_A 105 QFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIR 170 (192)
T ss_dssp CSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHh
Confidence 57899999999987 55 599999999999999999999999999999999999999999999986
No 40
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.42 E-value=0.0031 Score=68.15 Aligned_cols=195 Identities=12% Similarity=0.174 Sum_probs=119.0
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHhhh---h-cCC-cccchhhHHHHHHHHHhhccCChHHHHHHHHHHHHhhcCCCc--c
Q 016189 175 YFDKIRELTVSRSNSTVFKQALLSLA---M-DSG-LHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHI--H 247 (393)
Q Consensus 175 yf~~It~a~~~~~~~~~~~~aL~sL~---t-D~g-L~~LlPy~~~fi~e~v~~nl~nl~~L~~ll~~v~ALl~N~~l--~ 247 (393)
+...+.+.+ +.++...|+.|++.|. . .|. +.+-++-++.++...... .+-..-...+....++..++.. .
T Consensus 216 ~l~~l~~~~-~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~--~~~~vr~~a~e~l~~l~~~~~~~~~ 292 (852)
T 4fdd_A 216 FIENLFALA-GDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQD--QDENVALEACEFWLTLAEQPICKDV 292 (852)
T ss_dssp HHHHHHHHH-TCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHTTSTTHHHH
T ss_pred HHHHHHHHc-CCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccC--CcHHHHHHHHHHHHHHhcchhHHHH
Confidence 444444433 3455566776555443 2 221 122222233333333222 2334444456666677766543 3
Q ss_pred cccchhhhHHHHHHHHhccc---------cCCCCCC----cchHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHhc
Q 016189 248 IEPYLHQMMPSVITCLVSKR---------LGNRFSD----NHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFL 314 (393)
Q Consensus 248 ie~YlHqLlpslltcll~k~---------l~~~~~~----~h~~LR~~AA~lL~~I~~~~~~~y~~L~~Ri~~~l~k~l~ 314 (393)
+.||+..++|.++.++.... ......+ ..|.+|..|+..|..++..++ ..+-+.+...+.+.+.
T Consensus 293 ~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~---~~~~~~l~~~l~~~l~ 369 (852)
T 4fdd_A 293 LVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR---DELLPHILPLLKELLF 369 (852)
T ss_dssp HTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHhc
Confidence 68999999999988874211 1111111 589999999999999999887 3566778888888776
Q ss_pred CCCCCchhHhHHHHHHHhhCHHhHHHhcccchHHHHHhhhHhHhhhhhhhhhHHHHHHHHHhHhhhh
Q 016189 315 DPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQVD 381 (393)
Q Consensus 315 d~~~~l~t~YGAi~GL~~lG~~~vr~~ilP~l~~~~~~l~~~l~~~~~~~~~~~~~a~~v~~~l~~a 381 (393)
|+ ....+.+|+.+|..++...-. .+-|+++.++..|-+.+.+ .+...|..|..+.|.+-..
T Consensus 370 ~~--~~~~R~aa~~alg~i~~~~~~-~~~~~l~~~l~~l~~~l~d---~~~~Vr~~a~~~l~~l~~~ 430 (852)
T 4fdd_A 370 HH--EWVVKESGILVLGAIAEGCMQ-GMIPYLPELIPHLIQCLSD---KKALVRSITCWTLSRYAHW 430 (852)
T ss_dssp CS--SHHHHHHHHHHHHHTTTTTHH-HHGGGHHHHHHHHHHHTTC---SSHHHHHHHHHHHHHTHHH
T ss_pred CC--CHHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHHHHH
Confidence 54 688999999999999765444 3447888887777766643 3445666666666655443
No 41
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=97.31 E-value=0.00055 Score=57.43 Aligned_cols=61 Identities=18% Similarity=0.204 Sum_probs=56.7
Q ss_pred HHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhhc
Q 016189 8 TIEVIAQSIGVY-NLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (393)
Q Consensus 8 ~i~~iaes~G~~-~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~~ 68 (393)
-|..+.++++-+ .+|.++...+-..|+.....|..||.+++++.||+|||..||..|.+.+
T Consensus 38 YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 99 (123)
T 2nqb_D 38 YIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLL 99 (123)
T ss_dssp HHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHh
Confidence 477888999877 6999999999999999999999999999999999999999999999764
No 42
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.26 E-value=0.0025 Score=68.06 Aligned_cols=180 Identities=16% Similarity=0.187 Sum_probs=121.2
Q ss_pred HHHHH---HHHhhhhcCCcccchhhHHHHHHHHHhhccCChHHHHHHHHHHHHhhcCCC-cccccchhhhHHHHHHHHhc
Q 016189 190 TVFKQ---ALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPH-IHIEPYLHQMMPSVITCLVS 265 (393)
Q Consensus 190 ~~~~~---aL~sL~tD~gL~~LlPy~~~fi~e~v~~nl~nl~~L~~ll~~v~ALl~N~~-l~ie~YlHqLlpslltcll~ 265 (393)
..|+. +|..|...-| ..++|.++.++.+.+.. .+...-...+..+.++..... -.+.+|+.+++|.++.++
T Consensus 343 ~~r~~a~~~l~~l~~~~~-~~~~~~~l~~l~~~l~~--~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l-- 417 (876)
T 1qgr_A 343 NPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKN--PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELM-- 417 (876)
T ss_dssp CHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHCc-HhhHHHHHHHHHHHccC--CChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh--
Confidence 34554 3444444433 45677777777665543 356666667777788887655 346789999999999886
Q ss_pred cccCCCCCCcchHHHHHHHHHHHHHHHHcCCC--chhhHHHHHHHHHHHhcCCCCCchhHhHHHHHHHhhCHHhH-----
Q 016189 266 KRLGNRFSDNHWDLRNFVADLIASICTRFGHV--YQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVV----- 338 (393)
Q Consensus 266 k~l~~~~~~~h~~LR~~AA~lL~~I~~~~~~~--y~~L~~Ri~~~l~k~l~d~~~~l~t~YGAi~GL~~lG~~~v----- 338 (393)
.+.++.+|..|+..|+.++..++.. ....-+.++..+.+.+.|+ ...+-.|..+|..+....-
T Consensus 418 -------~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~---~~v~~~a~~al~~l~~~~~~~~~~ 487 (876)
T 1qgr_A 418 -------KDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE---PRVASNVCWAFSSLAEAAYEAADV 487 (876)
T ss_dssp -------TCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred -------CCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhhhcccc
Confidence 2467999999999999999887642 1234567888888887663 4456677777777765432
Q ss_pred --------HHhcccchHHHHHhhhHhHhhhhhhhhhHHHHHHHHHhHhhhhhhc
Q 016189 339 --------HLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQVDFFF 384 (393)
Q Consensus 339 --------r~~ilP~l~~~~~~l~~~l~~~~~~~~~~~~~a~~v~~~l~~a~~~ 384 (393)
...+.|+++.++..|...+......+...|..+..+.+.|+.++|-
T Consensus 488 ~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~ 541 (876)
T 1qgr_A 488 ADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAK 541 (876)
T ss_dssp TTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCS
T ss_pred ccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCch
Confidence 1246788888888777665432112335667777888888877764
No 43
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=97.23 E-value=0.00073 Score=56.91 Aligned_cols=61 Identities=16% Similarity=0.173 Sum_probs=56.9
Q ss_pred HHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhhc
Q 016189 8 TIEVIAQSIGVY-NLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (393)
Q Consensus 8 ~i~~iaes~G~~-~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~~ 68 (393)
-|..+.++++-+ .+|.++...+-..|+.....|..||.+++++.||+|||..||..|.+.+
T Consensus 41 YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 102 (126)
T 1tzy_B 41 YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLL 102 (126)
T ss_dssp HHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 477888999877 6999999999999999999999999999999999999999999999764
No 44
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.11 E-value=0.014 Score=62.16 Aligned_cols=125 Identities=8% Similarity=0.095 Sum_probs=85.2
Q ss_pred cccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHhcCCCCCchhHhHHH
Q 016189 248 IEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAI 327 (393)
Q Consensus 248 ie~YlHqLlpslltcll~k~l~~~~~~~h~~LR~~AA~lL~~I~~~~~~~y~~L~~Ri~~~l~k~l~d~~~~l~t~YGAi 327 (393)
+.+++..++|.++.++-... ....++.|.+|..|+.+|..++..++ ..+-+.+...+.+.+.| .....+.+|+
T Consensus 318 ~~~~~~~il~~ll~~l~~~~--~d~~d~~~~~r~~a~~~L~~l~~~~~---~~~~~~l~~~l~~~l~~--~~~~~r~~a~ 390 (861)
T 2bpt_A 318 ALSSIKDVVPNLLNLLTRQN--EDPEDDDWNVSMSAGACLQLFAQNCG---NHILEPVLEFVEQNITA--DNWRNREAAV 390 (861)
T ss_dssp HHHHHHHHHHHHHHHTTCCC--CC-CCCCCHHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHTTC--SSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc--cccccccCcHHHHHHHHHHHHHHHcc---HhHHHHHHHHHHHHcCC--CChhHHHHHH
Confidence 45677888998888763321 11235679999999999999999988 34567788888887765 4578899999
Q ss_pred HHHHhhCHHhHHHhcccchHHHHHhhhHhHhhhhhhhhhHHHHHHHHHhHhhhhh
Q 016189 328 QGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQVDF 382 (393)
Q Consensus 328 ~GL~~lG~~~vr~~ilP~l~~~~~~l~~~l~~~~~~~~~~~~~a~~v~~~l~~a~ 382 (393)
.+|..++...-...+.|+++.++..|...+.+ .+...|..|..+.|.+...+
T Consensus 391 ~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d---~~~~vr~~a~~~l~~l~~~~ 442 (861)
T 2bpt_A 391 MAFGSIMDGPDKVQRTYYVHQALPSILNLMND---QSLQVKETTAWCIGRIADSV 442 (861)
T ss_dssp HHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGC---SCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHHHHHh
Confidence 99999974332123346666666666555433 34556666666666665544
No 45
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.02 E-value=0.0058 Score=65.07 Aligned_cols=179 Identities=16% Similarity=0.128 Sum_probs=122.7
Q ss_pred HHHHH---HHHhhhhcCCcccchhhHHHHHHHHHhhccCChHHHHHHHHHHHHhhcCCC-cccccchhhhHHHHHHHHhc
Q 016189 190 TVFKQ---ALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPH-IHIEPYLHQMMPSVITCLVS 265 (393)
Q Consensus 190 ~~~~~---aL~sL~tD~gL~~LlPy~~~fi~e~v~~nl~nl~~L~~ll~~v~ALl~N~~-l~ie~YlHqLlpslltcll~ 265 (393)
..|.. +|..|...-| ..++|.++.++.+.+.. .++..-...+..+.++..... -.+.+|+.+++|.++.++
T Consensus 346 ~~r~~a~~~L~~l~~~~~-~~~~~~l~~~l~~~l~~--~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l-- 420 (861)
T 2bpt_A 346 NVSMSAGACLQLFAQNCG-NHILEPVLEFVEQNITA--DNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLM-- 420 (861)
T ss_dssp HHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGG--
T ss_pred cHHHHHHHHHHHHHHHcc-HhHHHHHHHHHHHHcCC--CChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc--
Confidence 34544 4555555444 56778888777766643 356666667778888887654 456788888888877764
Q ss_pred cccCCCCCCcchHHHHHHHHHHHHHHHHcCCCc--hhhHHHHHHHHHHHhcCCCCCchhHhHHHHHHHhhCHHhH---HH
Q 016189 266 KRLGNRFSDNHWDLRNFVADLIASICTRFGHVY--QNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVV---HL 340 (393)
Q Consensus 266 k~l~~~~~~~h~~LR~~AA~lL~~I~~~~~~~y--~~L~~Ri~~~l~k~l~d~~~~l~t~YGAi~GL~~lG~~~v---r~ 340 (393)
.+.++.+|+.|+..++.++...+... ...-+.++..+.+.+.|+ ......|..+|..+....- ..
T Consensus 421 -------~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~---~~v~~~a~~al~~l~~~~~~~~~~ 490 (861)
T 2bpt_A 421 -------NDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH---PKVATNCSWTIINLVEQLAEATPS 490 (861)
T ss_dssp -------GCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC---HHHHHHHHHHHHHHHHHHSSSSSC
T ss_pred -------CCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC---hHHHHHHHHHHHHHHHhcccccch
Confidence 24589999999999999998876432 334567788888887653 5566778888877755432 24
Q ss_pred hcccchHHHHHhhhHhHhhhhhhhhhHHHHHHHHHhHhhhhhhc
Q 016189 341 LILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQVDFFF 384 (393)
Q Consensus 341 ~ilP~l~~~~~~l~~~l~~~~~~~~~~~~~a~~v~~~l~~a~~~ 384 (393)
.+-|+++.++..|.+.+.. ...+...|..|....+.+....+-
T Consensus 491 ~l~~~~~~il~~L~~~l~~-~d~~~~vr~~a~~al~~l~~~~~~ 533 (861)
T 2bpt_A 491 PIYNFYPALVDGLIGAANR-IDNEFNARASAFSALTTMVEYATD 533 (861)
T ss_dssp GGGGGHHHHHHHHHHHHTC-SCCGGGHHHHHHHHHHHHHHHCCG
T ss_pred hhHHHHHHHHHHHHHHHhC-cCcchHHHHHHHHHHHHHHHHcch
Confidence 4568888888877766642 122245678888888888876653
No 46
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.00 E-value=0.013 Score=53.47 Aligned_cols=131 Identities=15% Similarity=0.122 Sum_probs=89.9
Q ss_pred HHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHH
Q 016189 230 LFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTL 309 (393)
Q Consensus 230 L~~ll~~v~ALl~N~~l~ie~YlHqLlpslltcll~k~l~~~~~~~h~~LR~~AA~lL~~I~~~~~~~y~~L~~Ri~~~l 309 (393)
+..+-+++..|-. .+++|+.+++|+++.++- +....+|+.|+..|..++...+ + ..++..+
T Consensus 78 ~~~l~~la~~l~~----~~~~~~~~ilp~ll~~l~---------d~~~~vr~~a~~aL~~~~~~~~--~----~~ll~~l 138 (242)
T 2qk2_A 78 GKCLALLAKGLAK----RFSNYASACVPSLLEKFK---------EKKPNVVTALREAIDAIYASTS--L----EAQQESI 138 (242)
T ss_dssp HHHHHHHHHHHGG----GGHHHHHHHHHHHHHGGG---------CCCHHHHHHHHHHHHHHHTTSC--H----HHHHHHH
T ss_pred HHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHHHHHcCC--H----HHHHHHH
Confidence 4444455554422 568999999999998852 3456899999999999998643 3 3466666
Q ss_pred HHHhcCCCCCchhHhHHHHHHHhh----CHHhHHHhcccchHHHHHhhhHhHhhhhhhhhhHHHHHHHHHhHhhhhhhcc
Q 016189 310 LHAFLDPTKSLSQHYGAIQGLAAL----GPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQVDFFFK 385 (393)
Q Consensus 310 ~k~l~d~~~~l~t~YGAi~GL~~l----G~~~vr~~ilP~l~~~~~~l~~~l~~~~~~~~~~~~~a~~v~~~l~~a~~~~ 385 (393)
...+.+ ++...+-+++..|..+ |++ ....|+++.+...|...+.+ .+.-.|..|..+.+.+..++|-.
T Consensus 139 ~~~l~~--~~~~vr~~~l~~l~~~l~~~~~~---~~~~~~l~~l~p~l~~~l~D---~~~~VR~~A~~~l~~l~~~vg~~ 210 (242)
T 2qk2_A 139 VESLSN--KNPSVKSETALFIARALTRTQPT---ALNKKLLKLLTTSLVKTLNE---PDPTVRDSSAEALGTLIKLMGDK 210 (242)
T ss_dssp HHHTTC--SCHHHHHHHHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHHHTS---SCHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHcC--CChHHHHHHHHHHHHHHHHcCCC---CccHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHcCHH
Confidence 777654 4567777777777663 443 23345666666666666543 44567999999999999999854
Q ss_pred cc
Q 016189 386 EF 387 (393)
Q Consensus 386 ~~ 387 (393)
.|
T Consensus 211 ~~ 212 (242)
T 2qk2_A 211 AV 212 (242)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 47
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=96.88 E-value=0.017 Score=62.38 Aligned_cols=149 Identities=19% Similarity=0.209 Sum_probs=109.9
Q ss_pred HHHhhhhcCCcccchhhHHHHHHHHHhhccCChHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCC
Q 016189 195 ALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSD 274 (393)
Q Consensus 195 aL~sL~tD~gL~~LlPy~~~fi~e~v~~nl~nl~~L~~ll~~v~ALl~N~~l~ie~YlHqLlpslltcll~k~l~~~~~~ 274 (393)
+|..|....| ..++|.++.++.+.+.. .+...-...+..+.++..+..-.+++|+.+++|.++.++ .+
T Consensus 344 ~L~~la~~~~-~~~~~~l~~~l~~~l~~--~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l---------~d 411 (852)
T 4fdd_A 344 ALDVLANVYR-DELLPHILPLLKELLFH--HEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCL---------SD 411 (852)
T ss_dssp HHHHHHHHHG-GGGHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHT---------TC
T ss_pred HHHHHHHhcc-HHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHc---------CC
Confidence 4555555545 56777777777766644 356666778888888888877788899999999998886 35
Q ss_pred cchHHHHHHHHHHHHHHHHcCC-CchhhHHHHHHHHHHHhcCCCCCchhHhHHHHHHHhhCHHhHHHhcccchHHHHHhh
Q 016189 275 NHWDLRNFVADLIASICTRFGH-VYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFL 353 (393)
Q Consensus 275 ~h~~LR~~AA~lL~~I~~~~~~-~y~~L~~Ri~~~l~k~l~d~~~~l~t~YGAi~GL~~lG~~~vr~~ilP~l~~~~~~l 353 (393)
.++.+|..|+..++.++...+. ........++..|.+.+.|+ +...+-.|..+|..+....-. .+.|+++.++..|
T Consensus 412 ~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~--~~~vr~~a~~aL~~l~~~~~~-~l~~~l~~ll~~L 488 (852)
T 4fdd_A 412 KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDS--NKRVQEAACSAFATLEEEACT-ELVPYLAYILDTL 488 (852)
T ss_dssp SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHHGG-GGGGGHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHhhH-hhHhHHHHHHHHH
Confidence 6899999999999999976543 22344567888888888764 557777888888887554333 3688888888887
Q ss_pred hHhHh
Q 016189 354 EPEML 358 (393)
Q Consensus 354 ~~~l~ 358 (393)
...+.
T Consensus 489 ~~~l~ 493 (852)
T 4fdd_A 489 VFAFS 493 (852)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76664
No 48
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=96.77 E-value=0.029 Score=59.80 Aligned_cols=145 Identities=11% Similarity=0.077 Sum_probs=92.5
Q ss_pred HHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHH
Q 016189 230 LFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTL 309 (393)
Q Consensus 230 L~~ll~~v~ALl~N~~l~ie~YlHqLlpslltcll~k~l~~~~~~~h~~LR~~AA~lL~~I~~~~~~~y~~L~~Ri~~~l 309 (393)
....++.+.+|+.+-.-.+.||+.+++|.++.++-.. +++.+|..|..+++.|++..|......-+.++..+
T Consensus 625 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~--------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l 696 (876)
T 1qgr_A 625 QEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNY--------AEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLL 696 (876)
T ss_dssp HHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHC--------TTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCc--------chHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 3445666666666545567899999999998887321 47899999999999999999876655567888888
Q ss_pred HHHhcCCCCCchhHhHHHHHHHhhCHHhHHHhcccchHHHHHhhhHhHhhhh--------hhhhhHHHHHHHHHhHhhhh
Q 016189 310 LHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEK--------QKNEMKRHEAWRVYGALQVD 381 (393)
Q Consensus 310 ~k~l~d~~~~l~t~YGAi~GL~~lG~~~vr~~ilP~l~~~~~~l~~~l~~~~--------~~~~~~~~~a~~v~~~l~~a 381 (393)
.+.|.++..+....--++.++..+.... ..-+.|.++.++..|...+.... +-....|..+...++.++.+
T Consensus 697 ~~~l~~~~~~~~~~~~~~~~l~~i~~~~-g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~ 775 (876)
T 1qgr_A 697 LENLGNENVHRSVKPQILSVFGDIALAI-GGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQG 775 (876)
T ss_dssp HHHHTCTTSCGGGHHHHHHHHHHHHHHH-GGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCccccHHhhHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888764333344444444444432211 11245666666666665543211 00114566666777777666
Q ss_pred hh
Q 016189 382 FF 383 (393)
Q Consensus 382 ~~ 383 (393)
++
T Consensus 776 ~~ 777 (876)
T 1qgr_A 776 LK 777 (876)
T ss_dssp HH
T ss_pred Hc
Confidence 55
No 49
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=96.68 E-value=0.011 Score=45.66 Aligned_cols=65 Identities=18% Similarity=0.288 Sum_probs=59.7
Q ss_pred CCChHHHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhh
Q 016189 3 IVPKETIEVIAQSIGVY-NLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (393)
Q Consensus 3 ~~~~~~i~~iaes~G~~-~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~ 67 (393)
++++..+..+.+++.-. .+++++...|.+-+..++..++..|.+.++|.|-++|.+.||...|+.
T Consensus 5 vl~k~~L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler 70 (76)
T 1h3o_B 5 VLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLER 70 (76)
T ss_dssp SSCHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 57888899988887654 599999999999999999999999999999999999999999999976
No 50
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=96.60 E-value=0.024 Score=51.63 Aligned_cols=110 Identities=15% Similarity=0.130 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHhhcCCchHHHHH---HHHhhhhcCCcccchhhHHHHHHHHHhhccCChHHHHHHHHHHHHhhcC--CC
Q 016189 171 ELQLYFDKIRELTVSRSNSTVFKQ---ALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRN--PH 245 (393)
Q Consensus 171 Elq~yf~~It~a~~~~~~~~~~~~---aL~sL~tD~gL~~LlPy~~~fi~e~v~~nl~nl~~L~~ll~~v~ALl~N--~~ 245 (393)
....++..|.+.+ +..+...|.. ||..+-...++..++|.+...+. + +|...-...+.++..++.+ |.
T Consensus 95 ~~~~ilp~ll~~l-~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~----~--~~~~vr~~~l~~l~~~l~~~~~~ 167 (242)
T 2qk2_A 95 YASACVPSLLEKF-KEKKPNVVTALREAIDAIYASTSLEAQQESIVESLS----N--KNPSVKSETALFIARALTRTQPT 167 (242)
T ss_dssp HHHHHHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTT----C--SCHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc----C--CChHHHHHHHHHHHHHHHHcCCC
Confidence 3344455555543 3344555553 56777777778788887765442 1 3555556778888887766 55
Q ss_pred cccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHcCC
Q 016189 246 IHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGH 296 (393)
Q Consensus 246 l~ie~YlHqLlpslltcll~k~l~~~~~~~h~~LR~~AA~lL~~I~~~~~~ 296 (393)
-...+|++.++|.++.|+ .+.+|.+|+.|...++.++...|.
T Consensus 168 ~~~~~~l~~l~p~l~~~l---------~D~~~~VR~~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 168 ALNKKLLKLLTTSLVKTL---------NEPDPTVRDSSAEALGTLIKLMGD 209 (242)
T ss_dssp GCCHHHHHHHHHHHHHHH---------TSSCHHHHHHHHHHHHHHHHHHCH
T ss_pred CccHHHHHHHHHHHHHHh---------cCCChHHHHHHHHHHHHHHHHcCH
Confidence 567899999999999997 367899999999999999988775
No 51
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=96.54 E-value=0.0021 Score=55.43 Aligned_cols=65 Identities=15% Similarity=0.159 Sum_probs=50.0
Q ss_pred CCChHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCccCHhhHHHHhhh
Q 016189 3 IVPKETIEVIAQSIG-VYNLSSDVALALAPDVEYRVREIMQEAIKCM-RHAHRTVLTANDVDSALNL 67 (393)
Q Consensus 3 ~~~~~~i~~iaes~G-~~~ls~~~a~~La~dve~rl~~iiq~a~k~~-~hskR~~Lt~~Di~~Al~~ 67 (393)
.||..-|++|.++-. +..++.+|.-.++..+|+++.++...|...+ +..||++|+.+||..|+..
T Consensus 19 ~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~ 85 (140)
T 2byk_A 19 FLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNK 85 (140)
T ss_dssp ----------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHT
T ss_pred CCCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhc
Confidence 478888888877643 2469999999999999999999999999999 9999999999999999975
No 52
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=96.50 E-value=0.067 Score=49.71 Aligned_cols=185 Identities=9% Similarity=0.046 Sum_probs=111.4
Q ss_pred CchHHHHHHHHhhhh-c----CCccc-chh--hHHHHHHHHHhhccCChHHHHHHHHHHHHhhcCCC-cccc-cchhhhH
Q 016189 187 SNSTVFKQALLSLAM-D----SGLHP-LVP--YFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPH-IHIE-PYLHQMM 256 (393)
Q Consensus 187 ~~~~~~~~aL~sL~t-D----~gL~~-LlP--y~~~fi~e~v~~nl~nl~~L~~ll~~v~ALl~N~~-l~ie-~YlHqLl 256 (393)
++-..|++|+..|.. - +.+.. -.+ -++.-+...+..- .|......-++.+..|...=. =.++ +|...++
T Consensus 28 ~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D-~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~ll 106 (249)
T 2qk1_A 28 SKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKD-ANIQAVALAAQSVELICDKLKTPGFSKDYVSLVF 106 (249)
T ss_dssp SSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHhcccccccHHHHHHHH
Confidence 444557777766555 2 23321 112 2333333333111 133333333444444443222 2367 9999999
Q ss_pred HHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHcCCCchh--hHHHHHHHHHHHhcCCCCCchhHhHHHHHHHhhC
Q 016189 257 PSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQN--LQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALG 334 (393)
Q Consensus 257 pslltcll~k~l~~~~~~~h~~LR~~AA~lL~~I~~~~~~~y~~--L~~Ri~~~l~k~l~d~~~~l~t~YGAi~GL~~lG 334 (393)
|+++..+= +..=.+|+.|...|..+|...+..... +. .++..+...|.+ ++...+.+++..|..+=
T Consensus 107 p~ll~~l~---------dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~-~ll~~l~~~l~~--k~~~vk~~al~~l~~~~ 174 (249)
T 2qk1_A 107 TPLLDRTK---------EKKPSVIEAIRKALLTICKYYDPLASSGRNE-DMLKDILEHMKH--KTPQIRMECTQLFNASM 174 (249)
T ss_dssp HHHHHGGG---------CCCHHHHHHHHHHHHHHHHHSCTTCTTCTTH-HHHHHHHHHTTC--SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHc---------CCCHHHHHHHHHHHHHHHHHccccccCCcHH-HHHHHHHHHHcC--CChHHHHHHHHHHHHHH
Confidence 99887752 223479999999999999987432211 22 466667777653 46688999988887764
Q ss_pred HHhHH--Hhcccch-HHHHHhhhHhHhhhhhhhhhHHHHHHHHHhHhhhhhhcccc
Q 016189 335 PSVVH--LLILPNL-ELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQVDFFFKEF 387 (393)
Q Consensus 335 ~~~vr--~~ilP~l-~~~~~~l~~~l~~~~~~~~~~~~~a~~v~~~l~~a~~~~~~ 387 (393)
..+-. ..+.|++ +.+...|...+.+ .+...|..|..+.+++..++|=+.|
T Consensus 175 ~~~~~~~~~l~~~l~~~iip~l~~~l~D---~~~~VR~aA~~~l~~i~~~vG~~~~ 227 (249)
T 2qk1_A 175 KEEKDGYSTLQRYLKDEVVPIVIQIVND---TQPAIRTIGFESFAILIKIFGMNTF 227 (249)
T ss_dssp HHCCSCSHHHHHHHTTTHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHHCSGGG
T ss_pred HHcCCcchhHHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHhCHHHH
Confidence 43321 2334666 6777776666643 4567899999999999999996544
No 53
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=96.49 E-value=0.0076 Score=54.63 Aligned_cols=60 Identities=18% Similarity=0.172 Sum_probs=55.8
Q ss_pred HHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhh
Q 016189 8 TIEVIAQSIGV-YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (393)
Q Consensus 8 ~i~~iaes~G~-~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~ 67 (393)
-|.++.++++- ..+|+++...+..-+...+..|..+|.+++++.+|+|+|..||..|.+.
T Consensus 8 yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl 68 (192)
T 2jss_A 8 YIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRL 68 (192)
T ss_dssp HHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHH
T ss_pred HHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 47788888876 5699999999999999999999999999999999999999999999985
No 54
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=95.99 E-value=0.035 Score=44.10 Aligned_cols=68 Identities=24% Similarity=0.259 Sum_probs=60.7
Q ss_pred CCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCccCHhhHHHHhhhcC
Q 016189 2 SIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAH-RTVLTANDVDSALNLRN 69 (393)
Q Consensus 2 s~~~~~~i~~iaes~G~~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hsk-R~~Lt~~Di~~Al~~~n 69 (393)
|-+++..||++..++.-.+++++++..++.-...++-+|+++|.+.+.+-+ +.-|.+.||..|.+.+.
T Consensus 15 s~f~k~~vKrl~~~~~~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl~ 83 (89)
T 1bh9_B 15 SAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLK 83 (89)
T ss_dssp CCCCHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Confidence 458999999988888777899999999999999999999999999999875 45899999999988753
No 55
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=95.52 E-value=0.49 Score=53.01 Aligned_cols=138 Identities=11% Similarity=0.125 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHhhcCCCc-ccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHcCC-------Cch
Q 016189 228 SLLFALMRVARSLLRNPHI-HIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGH-------VYQ 299 (393)
Q Consensus 228 ~~L~~ll~~v~ALl~N~~l-~ie~YlHqLlpslltcll~k~l~~~~~~~h~~LR~~AA~lL~~I~~~~~~-------~y~ 299 (393)
......+..+..++.+-.- .+.+|+..++|.++.|+ .+..|.+|..|...++.+++.++. ...
T Consensus 492 ~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l---------~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~ 562 (1230)
T 1u6g_C 492 NLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACV---------GDPFYKITSEALLVTQQLVKVIRPLDQPSSFDAT 562 (1230)
T ss_dssp HHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHH---------TCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHH---------cccchHHHHHHHHHHHHHHHHhcCcccccccchH
Confidence 3444555666666654322 36789999999999876 235689999999999999999886 334
Q ss_pred hhHHHHHHHHHHHhcCCCCCchhHhHHHHHHHhhCHHhHHHhcccchHHHHHhhhHhHhhhhhhhhhHHHHHHHHHhHhh
Q 016189 300 NLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQ 379 (393)
Q Consensus 300 ~L~~Ri~~~l~k~l~d~~~~l~t~YGAi~GL~~lG~~~vr~~ilP~l~~~~~~l~~~l~~~~~~~~~~~~~a~~v~~~l~ 379 (393)
...+.++..+.+.+.+.+.....+-.|+.+|..|...+=. .+.|+++.++..|.+.+. ++..|..+.+..+.+.
T Consensus 563 ~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~-~~~~~~~~~l~~L~~~l~-----~e~~r~~~~~al~~i~ 636 (1230)
T 1u6g_C 563 PYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGD-NLGSDLPNTLQIFLERLK-----NEITRLTTVKALTLIA 636 (1230)
T ss_dssp HHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGG-GCCTHHHHHHHHHHHHTT-----SSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCc-hhhhhHHHHHHHHHHHhc-----cchhHHHHHHHHHHHH
Confidence 4456777788888754455567778888887777433222 234666676666655443 2345556666665544
Q ss_pred h
Q 016189 380 V 380 (393)
Q Consensus 380 ~ 380 (393)
.
T Consensus 637 ~ 637 (1230)
T 1u6g_C 637 G 637 (1230)
T ss_dssp T
T ss_pred h
Confidence 3
No 56
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=94.93 E-value=1 Score=50.46 Aligned_cols=187 Identities=14% Similarity=0.109 Sum_probs=111.6
Q ss_pred HHHHHHhhcCCchHHHHHHHHhhhhc---CCcc---cchhhHHHHHHHHHhhccCChHHHHHHHHHHHHhhcCCCccccc
Q 016189 177 DKIRELTVSRSNSTVFKQALLSLAMD---SGLH---PLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEP 250 (393)
Q Consensus 177 ~~It~a~~~~~~~~~~~~aL~sL~tD---~gL~---~LlPy~~~fi~e~v~~nl~nl~~L~~ll~~v~ALl~N~~l~ie~ 250 (393)
..+.+.+.+ .|...|..|++.|.+. +..+ ...++++..+.+.+.. .+...-..-++.+..|... + =++
T Consensus 9 ~~lL~~l~s-~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d--~~~~vR~~A~~~L~~l~~~--~-~~~ 82 (1230)
T 1u6g_C 9 SNLLEKMTS-SDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLED--KNGEVQNLAVKCLGPLVSK--V-KEY 82 (1230)
T ss_dssp HHHHHHTTC-SSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHHHTT--S-CHH
T ss_pred HHHHHhcCC-CCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHh--C-CHH
Confidence 344444544 4555677777666542 1111 1123333334333331 2333333344444455542 1 126
Q ss_pred chhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHcCCC------chhhHHHHHHHHHHHhcCCCCCchhHh
Q 016189 251 YLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHV------YQNLQSRVTRTLLHAFLDPTKSLSQHY 324 (393)
Q Consensus 251 YlHqLlpslltcll~k~l~~~~~~~h~~LR~~AA~lL~~I~~~~~~~------y~~L~~Ri~~~l~k~l~d~~~~l~t~Y 324 (393)
++.+++|.++.++. +++-.+|..|+..|+.++...+.. .....+.++..|.+.+.| ..+.....
T Consensus 83 ~~~~i~~~Ll~~l~---------d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~-~~~~~~~~ 152 (1230)
T 1u6g_C 83 QVETIVDTLCTNML---------SDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK-QEDVSVQL 152 (1230)
T ss_dssp HHHHHHHHHHHHTT---------CSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC-CSCHHHHH
T ss_pred HHHHHHHHHHHHhc---------CCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcC-CCchHHHH
Confidence 88888888888752 233478999999999999988754 123456777778887764 34568889
Q ss_pred HHHHHHHhhCHHhHHHhcccchHHHHHhhhHhHhhhhhhhhhHHHHHHHHHhHhhhhhh
Q 016189 325 GAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQVDFF 383 (393)
Q Consensus 325 GAi~GL~~lG~~~vr~~ilP~l~~~~~~l~~~l~~~~~~~~~~~~~a~~v~~~l~~a~~ 383 (393)
||+..|..+-... ...+.|+++.++..+-+.+.. .+...|..|.+..+.+....+
T Consensus 153 ~al~~l~~~~~~~-~~~l~~~~~~ll~~l~~~L~~---~~~~vR~~a~~al~~l~~~~~ 207 (1230)
T 1u6g_C 153 EALDIMADMLSRQ-GGLLVNFHPSILTCLLPQLTS---PRLAVRKRTIIALGHLVMSCG 207 (1230)
T ss_dssp HHHHHHHHHHHHT-CSSCTTTHHHHHHHHGGGGGC---SSHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHh-HhHHHHHHHHHHHHHHHHHcC---CcHHHHHHHHHHHHHHHHhcC
Confidence 9999888763321 124568888888888777643 234577888888888776554
No 57
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=94.74 E-value=0.9 Score=45.56 Aligned_cols=114 Identities=9% Similarity=0.062 Sum_probs=67.6
Q ss_pred chhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHhcCCCCCchhHhHHHHHH
Q 016189 251 YLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGL 330 (393)
Q Consensus 251 YlHqLlpslltcll~k~l~~~~~~~h~~LR~~AA~lL~~I~~~~~~~y~~L~~Ri~~~l~k~l~d~~~~l~t~YGAi~GL 330 (393)
+...++|.++.++ .+.+|.+|+.|+..++.+++.+|.. ...+.++..+.+.+.| .+...+-.++.++
T Consensus 438 ~~~~l~~~l~~~l---------~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~~--~~~~~R~~a~~~l 504 (588)
T 1b3u_A 438 FDEKLNSLCMAWL---------VDHVYAIREAATSNLKKLVEKFGKE--WAHATIIPKVLAMSGD--PNYLHRMTTLFCI 504 (588)
T ss_dssp CCHHHHHHHHHGG---------GCSSHHHHHHHHHHHHHHHHHHCHH--HHHHHTHHHHHHTTTC--SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---------cCCcHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHhhC--CCHHHHHHHHHHH
Confidence 3346777666653 2467899999999999999998863 2345556666655443 4556666777777
Q ss_pred HhhCHHhHHHhcccchHHHHHhhhHhHhhhhhhhhhHHHHHHHHHhHhhhhhh
Q 016189 331 AALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQVDFF 383 (393)
Q Consensus 331 ~~lG~~~vr~~ilP~l~~~~~~l~~~l~~~~~~~~~~~~~a~~v~~~l~~a~~ 383 (393)
..++...-... .++.++..|...+. ..+...|..|.+..+.+...+|
T Consensus 505 ~~l~~~~~~~~---~~~~~~~~l~~~l~---d~~~~Vr~~a~~~l~~l~~~~~ 551 (588)
T 1b3u_A 505 NVLSEVCGQDI---TTKHMLPTVLRMAG---DPVANVRFNVAKSLQKIGPILD 551 (588)
T ss_dssp HHHHHHHHHHH---HHHHTHHHHHHGGG---CSCHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHhcCHHH---HHHHHHHHHHhhCC---CCCchHHHHHHHHHHHHHHHhc
Confidence 76654322111 11222222222222 2334577788888887776554
No 58
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=94.66 E-value=0.13 Score=50.01 Aligned_cols=90 Identities=23% Similarity=0.356 Sum_probs=71.1
Q ss_pred HHHhhhhcCCcccchhhHHHHHHHHHhhccCChHHHHHHHHHHHHhhcCCC-cccccchhhhHHHHHHHHhccccCCCCC
Q 016189 195 ALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPH-IHIEPYLHQMMPSVITCLVSKRLGNRFS 273 (393)
Q Consensus 195 aL~sL~tD~gL~~LlPy~~~fi~e~v~~nl~nl~~L~~ll~~v~ALl~N~~-l~ie~YlHqLlpslltcll~k~l~~~~~ 273 (393)
+|..|...-| ..++|.++.++.+.+.. .++..-...+..+.++..... =.+.+|+.+++|.++.++ .
T Consensus 351 ~L~~l~~~~~-~~~~~~~~~~l~~~l~~--~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l---------~ 418 (462)
T 1ibr_B 351 CLMLLATCCE-DDIVPHVLPFIKEHIKN--PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELM---------K 418 (462)
T ss_dssp HHHHHHHHTT-TTHHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGG---------G
T ss_pred HHHHHHHhcc-HHHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh---------c
Confidence 4566666666 68888888888777654 367777778888888888655 357889999999988886 2
Q ss_pred CcchHHHHHHHHHHHHHHHHcCC
Q 016189 274 DNHWDLRNFVADLIASICTRFGH 296 (393)
Q Consensus 274 ~~h~~LR~~AA~lL~~I~~~~~~ 296 (393)
+.++.+|..|+..|+.++..++.
T Consensus 419 d~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 419 DPSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp CSCHHHHHHHHHHHHHHHHHGGG
T ss_pred CCCHHHHHHHHHHHHHHHHhccc
Confidence 45789999999999999998876
No 59
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=94.63 E-value=0.68 Score=46.46 Aligned_cols=57 Identities=14% Similarity=0.120 Sum_probs=33.4
Q ss_pred CcchHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHhcCCCCCchhHhHHHHHHHhhC
Q 016189 274 DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALG 334 (393)
Q Consensus 274 ~~h~~LR~~AA~lL~~I~~~~~~~y~~L~~Ri~~~l~k~l~d~~~~l~t~YGAi~GL~~lG 334 (393)
++++.+|..|+..|+.+++..+. ....+.+...+.+.+.|+ ....+.+|+.+|..++
T Consensus 175 d~~~~VR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~--~~~vr~~a~~~l~~l~ 231 (588)
T 1b3u_A 175 DDTPMVRRAAASKLGEFAKVLEL--DNVKSEIIPMFSNLASDE--QDSVRLLAVEACVNIA 231 (588)
T ss_dssp CSCHHHHHHHHHHHHHHHHTSCH--HHHHHTHHHHHHHHHTCS--CHHHHTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcH--HhHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHH
Confidence 45667777777777777766553 122344555555555543 2455566666666554
No 60
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=94.51 E-value=0.078 Score=49.12 Aligned_cols=64 Identities=16% Similarity=0.172 Sum_probs=56.2
Q ss_pred HHHHHHHHcCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhhcCCC
Q 016189 8 TIEVIAQSIGV----YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVE 71 (393)
Q Consensus 8 ~i~~iaes~G~----~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~~nie 71 (393)
-|+.||+...- -+...+|..+|.+..|.+|-.+.+++-.++.|+||-|+.+.|+..|.+.++..
T Consensus 20 LVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg~~ 87 (235)
T 2l5a_A 20 LVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQF 87 (235)
T ss_dssp HHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSCSC
T ss_pred HHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhhcc
Confidence 35667776542 37899999999999999999999999999999999999999999999988653
No 61
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=93.78 E-value=1.2 Score=40.95 Aligned_cols=147 Identities=10% Similarity=0.088 Sum_probs=86.4
Q ss_pred HHHHHHHHHhhcCCchHHHHHH---HHhhhhcCCcccch-hhHHHHHHHHHhhccCC--hHHHHHHHHHHHHhhc--CCC
Q 016189 174 LYFDKIRELTVSRSNSTVFKQA---LLSLAMDSGLHPLV-PYFTYFISEEVTRSLKN--FSLLFALMRVARSLLR--NPH 245 (393)
Q Consensus 174 ~yf~~It~a~~~~~~~~~~~~a---L~sL~tD~gL~~Ll-Py~~~fi~e~v~~nl~n--l~~L~~ll~~v~ALl~--N~~ 245 (393)
..++-+...+-..++...+..| |..|.+.-+-..+- ||....+---+. -+++ -.........+.+++. ||
T Consensus 60 ~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~-~l~dkk~~V~~aa~~al~~i~~~~~~- 137 (249)
T 2qk1_A 60 NLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLD-RTKEKKPSVIEAIRKALLTICKYYDP- 137 (249)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHH-GGGCCCHHHHHHHHHHHHHHHHHSCT-
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHccc-
Confidence 3455555554244555555554 45555322211344 566554443222 2222 3333445555566665 55
Q ss_pred cccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHcCCC---chhhH-HHHHHHHHHHhcCCCCCch
Q 016189 246 IHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHV---YQNLQ-SRVTRTLLHAFLDPTKSLS 321 (393)
Q Consensus 246 l~ie~YlHqLlpslltcll~k~l~~~~~~~h~~LR~~AA~lL~~I~~~~~~~---y~~L~-~Ri~~~l~k~l~d~~~~l~ 321 (393)
....+|+..+++.++.++= ...|.+|..+..+|+.+++..+.. +...- +.++..+.+.+-|+ ...
T Consensus 138 ~~~~~~l~~ll~~l~~~l~---------~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~--~~~ 206 (249)
T 2qk1_A 138 LASSGRNEDMLKDILEHMK---------HKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDT--QPA 206 (249)
T ss_dssp TCTTCTTHHHHHHHHHHTT---------CSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCS--SHH
T ss_pred cccCCcHHHHHHHHHHHHc---------CCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCC--CHH
Confidence 3355679999998887752 125999999999999999988752 22233 56777888887664 444
Q ss_pred hHhHHHHHHHhh
Q 016189 322 QHYGAIQGLAAL 333 (393)
Q Consensus 322 t~YGAi~GL~~l 333 (393)
.+=.|+-+|..+
T Consensus 207 VR~aA~~~l~~i 218 (249)
T 2qk1_A 207 IRTIGFESFAIL 218 (249)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 556666666664
No 62
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=93.77 E-value=0.35 Score=37.89 Aligned_cols=62 Identities=11% Similarity=0.127 Sum_probs=56.0
Q ss_pred CCChHHHHHHHHHcCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHh
Q 016189 3 IVPKETIEVIAQSIGVY----NLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSAL 65 (393)
Q Consensus 3 ~~~~~~i~~iaes~G~~----~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al 65 (393)
.||+++|.++.. ..++ ++++++.+.+++.++-+++|.+..|..-++-.+...|..+|++..+
T Consensus 12 ~i~~~li~ril~-~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~ 77 (84)
T 4dra_E 12 GFRKELVSRLLH-LHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVL 77 (84)
T ss_dssp CCCHHHHHHHHH-TTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 589999999998 5554 7999999999999999999999999998887788899999999866
No 63
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=92.79 E-value=0.075 Score=40.79 Aligned_cols=44 Identities=16% Similarity=0.283 Sum_probs=36.7
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016189 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHA 51 (393)
Q Consensus 8 ~i~~iaes~G~~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hs 51 (393)
-|..|+...|++++++|+...++-.+|.|+|.+++.-+..+.|-
T Consensus 11 ri~~I~~k~gl~~~~~dv~~~iS~a~qeRLr~llekl~~~a~~R 54 (75)
T 1h3o_A 11 RILEIGKKHGITELHPDVVSYVSHATQQRLQNLVEKISETAQQK 54 (75)
T ss_dssp HHHHHHHTTTCCEECTTHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHhcCCCcCChhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 36679999999999999999999999999999999999888884
No 64
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=92.37 E-value=0.51 Score=36.66 Aligned_cols=63 Identities=22% Similarity=0.217 Sum_probs=55.1
Q ss_pred CCChHHHHHHHHHc---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHh
Q 016189 3 IVPKETIEVIAQSI---GVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSAL 65 (393)
Q Consensus 3 ~~~~~~i~~iaes~---G~~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al 65 (393)
-||+++|.+|.+.. .-++++++|.+.+++-++-+++|.+..|..-++-.+-..|..+|++..+
T Consensus 8 ~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~ 73 (81)
T 3b0b_C 8 GFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVL 73 (81)
T ss_dssp CCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHH
Confidence 58999999988762 1347999999999999999999999999998887788899999999865
No 65
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=90.93 E-value=2.4 Score=46.14 Aligned_cols=148 Identities=12% Similarity=0.109 Sum_probs=92.0
Q ss_pred HHHhhhhcCCcccchhhHHHHHHHHHhhc---cCChHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCC
Q 016189 195 ALLSLAMDSGLHPLVPYFTYFISEEVTRS---LKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNR 271 (393)
Q Consensus 195 aL~sL~tD~gL~~LlPy~~~fi~e~v~~n---l~nl~~L~~ll~~v~ALl~N~~l~ie~YlHqLlpslltcll~k~l~~~ 271 (393)
+|..+..--| ..++|.+..++.+.+... -.++......+..+.++.....-...+++.++++ ++..+ ..
T Consensus 444 ~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l-----~~- 515 (971)
T 2x1g_F 444 TFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEI-----PY- 515 (971)
T ss_dssp HHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHS-----CT-
T ss_pred HHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhc-----Cc-
Confidence 3445554444 578888888887776541 2467778888888888887766566677777777 33332 11
Q ss_pred CCCcchHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHhcCCCCCchhHhHHHHHHHhhCHHhHHHhcccchHHHHH
Q 016189 272 FSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLK 351 (393)
Q Consensus 272 ~~~~h~~LR~~AA~lL~~I~~~~~~~y~~L~~Ri~~~l~k~l~d~~~~l~t~YGAi~GL~~lG~~~vr~~ilP~l~~~~~ 351 (393)
.+.|-.+|..|..+++.++.-++. .+..-+.++..+.+.| | ... .--|..++..|- +..+..+.|+++.+..
T Consensus 516 -~d~~~~vr~~a~~~l~~~~~~l~~-~~~~l~~vl~~l~~~l-~--~~v--~~~A~~al~~l~-~~~~~~l~p~~~~ll~ 587 (971)
T 2x1g_F 516 -EKLNVKLLGTALETMGSYCNWLME-NPAYIPPAINLLVRGL-N--SSM--SAQATLGLKELC-RDCQLQLKPYADPLLN 587 (971)
T ss_dssp -TTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-H--SSC--HHHHHHHHHHHH-HHCHHHHHHHHHHHHH
T ss_pred -cccCHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHh-C--hHH--HHHHHHHHHHHH-HHHHHhccccHHHHHH
Confidence 134678999999999999987764 3455667888888877 5 222 222333344443 3345567799999988
Q ss_pred hhhHhHh
Q 016189 352 FLEPEML 358 (393)
Q Consensus 352 ~l~~~l~ 358 (393)
.+...+.
T Consensus 588 ~l~~~l~ 594 (971)
T 2x1g_F 588 ACHASLN 594 (971)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 8876654
No 66
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=90.83 E-value=2.2 Score=46.21 Aligned_cols=160 Identities=11% Similarity=0.075 Sum_probs=100.9
Q ss_pred ccchhhHHHHHHHHHhh--ccCChHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHH
Q 016189 206 HPLVPYFTYFISEEVTR--SLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFV 283 (393)
Q Consensus 206 ~~LlPy~~~fi~e~v~~--nl~nl~~L~~ll~~v~ALl~N~~l~ie~YlHqLlpslltcll~k~l~~~~~~~h~~LR~~A 283 (393)
..++|.+..++.+.+.. +-.++......+..+.++.....-...+++.++++. +. .++. +|-.+|..+
T Consensus 440 ~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~----l~--~l~~----~~~~vr~~~ 509 (963)
T 2x19_B 440 AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGL----IP--RISI----SNVQLADTV 509 (963)
T ss_dssp HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHH----GG--GSCC----CSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHH----HH--hCCC----CcHHHHHHH
Confidence 35677777777776632 224677777788888888877655556677666662 22 2332 467899999
Q ss_pred HHHHHHHHHHcCCCchhhHHHHHHHHHHHhcCCCCCchhHhHHHHHHHhhCHHhHHHhcccchHHHHHhhhHhHhhhhhh
Q 016189 284 ADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQK 363 (393)
Q Consensus 284 A~lL~~I~~~~~~~y~~L~~Ri~~~l~k~l~d~~~~l~t~YGAi~GL~~lG~~~vr~~ilP~l~~~~~~l~~~l~~~~~~ 363 (393)
..+++..++-+.. .+..-+.++..+.+.|.| ...+--|...|..+-.+ .+..+.|+++.+...|...+... ..
T Consensus 510 ~~~l~~~~~~l~~-~~~~l~~vl~~l~~~l~~----~~V~~~A~~al~~l~~~-~~~~l~p~~~~il~~l~~~l~~~-~~ 582 (963)
T 2x19_B 510 MFTIGALSEWLAD-HPVMINSVLPLVLHALGN----PELSVSSVSTLKKICRE-CKYDLPPYAANIVAVSQDVLMKQ-IH 582 (963)
T ss_dssp HHHHHHTHHHHHH-CHHHHTTTHHHHHHHTTC----GGGHHHHHHHHHHHHHH-TGGGCTTTHHHHHHHHHHHHHTT-CS
T ss_pred HHHHHHHHHHHHh-CHHHHHHHHHHHHHHhCC----chHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHhccC-CC
Confidence 9999999875543 234555677777777754 23444566667666644 45568899999999887665421 11
Q ss_pred hhhHHHHHHHHHhHhhhhh
Q 016189 364 NEMKRHEAWRVYGALQVDF 382 (393)
Q Consensus 364 ~~~~~~~a~~v~~~l~~a~ 382 (393)
+...|..+-...|.++.++
T Consensus 583 ~~~~~~~~~eai~~i~~~~ 601 (963)
T 2x19_B 583 KTSQCMWLMQALGFLLSAL 601 (963)
T ss_dssp CHHHHHHHHHHHHHHHTTS
T ss_pred ChHHHHHHHHHHHHHHhcC
Confidence 1223444444455555444
No 67
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=90.08 E-value=5.4 Score=36.68 Aligned_cols=143 Identities=14% Similarity=0.026 Sum_probs=88.2
Q ss_pred ChHHHHHHHHHHHHhhcCCCcc--cccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHcCCCchhhHH
Q 016189 226 NFSLLFALMRVARSLLRNPHIH--IEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQS 303 (393)
Q Consensus 226 nl~~L~~ll~~v~ALl~N~~l~--ie~YlHqLlpslltcll~k~l~~~~~~~h~~LR~~AA~lL~~I~~~~~~~y~~L~~ 303 (393)
|.......++++.+++.+-... ........++.++..++.|.++.. .=.+|+.|...+..++...+.. .
T Consensus 68 N~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~----k~~~~~~a~~~l~~~~~~~~~~-----~ 138 (278)
T 4ffb_C 68 NVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSS----RATTKTQSMSCILSLCGLDTSI-----T 138 (278)
T ss_dssp SHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCC----CHHHHHHHHHHHHHHHHTSSSS-----H
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCc----cHHHHHHHHHHHHHHHHhcCcH-----H
Confidence 5667777788888888764433 233344566667777777766543 2378999999888888654432 2
Q ss_pred HHHHHHHHHhcCCCCCchhHhHHHHHHH----hhCHHhHHHhcccchHHHHHhhhHhHhhhhhhhhhHHHHHHHHHhHhh
Q 016189 304 RVTRTLLHAFLDPTKSLSQHYGAIQGLA----ALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQ 379 (393)
Q Consensus 304 Ri~~~l~k~l~d~~~~l~t~YGAi~GL~----~lG~~~vr~~ilP~l~~~~~~l~~~l~~~~~~~~~~~~~a~~v~~~l~ 379 (393)
.+...+...+- +++....-+++..|. .+|...+.. -|.++.+.+.+-..+. .++..+|..|..+.+.+.
T Consensus 139 ~~~e~l~~~l~--~Knpkv~~~~l~~l~~~l~~fg~~~~~~--k~~l~~i~~~l~k~l~---d~~~~VR~aA~~l~~~ly 211 (278)
T 4ffb_C 139 QSVELVIPFFE--KKLPKLIAAAANCVYELMAAFGLTNVNV--QTFLPELLKHVPQLAG---HGDRNVRSQTMNLIVEIY 211 (278)
T ss_dssp HHHHHHGGGGG--CSCHHHHHHHHHHHHHHHHHHTTTTCCH--HHHHHHHGGGHHHHHT---CSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--ccCHHHHHHHHHHHHHHHHHhCCCcCCc--hhHHHHHHHHHHHHHh---CCcHHHHHHHHHHHHHHH
Confidence 34555666654 577777777776654 456554321 1234444444444443 356789999999999998
Q ss_pred hhhhc
Q 016189 380 VDFFF 384 (393)
Q Consensus 380 ~a~~~ 384 (393)
.-+|-
T Consensus 212 ~~~G~ 216 (278)
T 4ffb_C 212 KVTGN 216 (278)
T ss_dssp TC---
T ss_pred HHhCc
Confidence 87773
No 68
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=88.94 E-value=1.1 Score=38.76 Aligned_cols=110 Identities=10% Similarity=0.082 Sum_probs=66.3
Q ss_pred cchhhHHHHHHHHHhhccCChHHHHHHHHHHHHhhc-CCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHH
Q 016189 207 PLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLR-NPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVAD 285 (393)
Q Consensus 207 ~LlPy~~~fi~e~v~~nl~nl~~L~~ll~~v~ALl~-N~~l~ie~YlHqLlpslltcll~k~l~~~~~~~h~~LR~~AA~ 285 (393)
..+|.++.++.+ .+.......+..+..|.. |+...-.-.-+..+|.++.++- +.+..+|..|+.
T Consensus 54 g~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~---------~~~~~v~~~a~~ 118 (210)
T 4db6_A 54 GALPALVQLLSS------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS---------SPNEQILQEALW 118 (210)
T ss_dssp THHHHHHHHTTC------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTT---------CSCHHHHHHHHH
T ss_pred CCHHHHHHHHcC------CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHc---------CCcHHHHHHHHH
Confidence 456777666542 245556666777777764 3332222222357888888752 235799999999
Q ss_pred HHHHHHHHcCCCc-hhhHHHHHHHHHHHhcCCCCCchhHhHHHHHHHhh
Q 016189 286 LIASICTRFGHVY-QNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL 333 (393)
Q Consensus 286 lL~~I~~~~~~~y-~~L~~Ri~~~l~k~l~d~~~~l~t~YGAi~GL~~l 333 (393)
.|..++....... .-+...++..|.+.+.++ +.....-|+.+|..+
T Consensus 119 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l 165 (210)
T 4db6_A 119 ALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNI 165 (210)
T ss_dssp HHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC--CHHHHHHHHHHHHHH
Confidence 9999985211100 112334567778877653 556677777777777
No 69
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=88.84 E-value=6.9 Score=42.67 Aligned_cols=149 Identities=14% Similarity=0.062 Sum_probs=96.5
Q ss_pred HHHhhhhcCCcccchhhHHHHHHHHHhh----ccCChHHHHHHHHHHHHhhcC------------CCcccccchhh-hHH
Q 016189 195 ALLSLAMDSGLHPLVPYFTYFISEEVTR----SLKNFSLLFALMRVARSLLRN------------PHIHIEPYLHQ-MMP 257 (393)
Q Consensus 195 aL~sL~tD~gL~~LlPy~~~fi~e~v~~----nl~nl~~L~~ll~~v~ALl~N------------~~l~ie~YlHq-Llp 257 (393)
.|..|...-+ ..++|-+..|+.+.+.. ...|+......+.++.|+..+ +.+.+++++.+ ++|
T Consensus 384 ~L~~l~~~~~-~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p 462 (960)
T 1wa5_C 384 FLKELKEKNE-VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAP 462 (960)
T ss_dssp HHHHHHHHCH-HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHH
T ss_pred HHHHHHHHcc-hhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHH
Confidence 3566666655 66777777777666543 134677777778888888643 22245555432 334
Q ss_pred HHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHhcCCCCCchhHhHHHHHHHhhCHH-
Q 016189 258 SVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPS- 336 (393)
Q Consensus 258 slltcll~k~l~~~~~~~h~~LR~~AA~lL~~I~~~~~~~y~~L~~Ri~~~l~k~l~d~~~~l~t~YGAi~GL~~lG~~- 336 (393)
.+ . . +...|-.+|..|..++++++..+. +..-..++..+.+.|.|+ +...+--|..+|..|-..
T Consensus 463 ~l-----~----~-~~~~~p~vr~~a~~~lg~~~~~~~---~~~l~~~l~~l~~~L~d~--~~~V~~~A~~Al~~~~~~~ 527 (960)
T 1wa5_C 463 DL-----T----S-NNIPHIILRVDAIKYIYTFRNQLT---KAQLIELMPILATFLQTD--EYVVYTYAAITIEKILTIR 527 (960)
T ss_dssp HH-----H----C-SSCSCHHHHHHHHHHHHHTGGGSC---HHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTCB
T ss_pred Hh-----c----C-CCCCCceehHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHHHhcc
Confidence 22 1 1 112477899999999999988763 456677888888888765 466666677777765431
Q ss_pred ---------hHHHhcccchHHHHHhhhHhHhh
Q 016189 337 ---------VVHLLILPNLELYLKFLEPEMLL 359 (393)
Q Consensus 337 ---------~vr~~ilP~l~~~~~~l~~~l~~ 359 (393)
.-+..+.|+++.++..|-..+..
T Consensus 528 ~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~ 559 (960)
T 1wa5_C 528 ESNTSPAFIFHKEDISNSTEILLKNLIALILK 559 (960)
T ss_dssp SCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHT
T ss_pred cccccccccccHHHhhhhHHHHHHHHHHHHHh
Confidence 13566889999999988766543
No 70
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=88.27 E-value=2.1 Score=47.68 Aligned_cols=156 Identities=10% Similarity=0.049 Sum_probs=105.7
Q ss_pred HHHHhhhhcCCcccchhhHHHHHHHHHhhccCChHHHHHHHHHHHHhhcCCCcc-cccchhhhHHHHHHHHhccccCCCC
Q 016189 194 QALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIH-IEPYLHQMMPSVITCLVSKRLGNRF 272 (393)
Q Consensus 194 ~aL~sL~tD~gL~~LlPy~~~fi~e~v~~nl~nl~~L~~ll~~v~ALl~N~~l~-ie~YlHqLlpslltcll~k~l~~~~ 272 (393)
++|-.+..--+- .+++.+...+.+.+..+-.++..+...+-.+.|+...+.-. ..+++++++|.+++.+=.++.
T Consensus 435 d~L~~l~~l~~~-~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~---- 509 (1023)
T 4hat_C 435 EVLVYLTHLNVI-DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRG---- 509 (1023)
T ss_dssp HHHHHHHHHCHH-HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCS----
T ss_pred HHHHHHhccCHH-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhcccc----
Confidence 455444332222 46666666666666544357888888888889999887764 679999999988886533321
Q ss_pred CCcchHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHhcCCCCCchhHhHHHHHHHhhCHHhHHHhc-------ccc
Q 016189 273 SDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLI-------LPN 345 (393)
Q Consensus 273 ~~~h~~LR~~AA~lL~~I~~~~~~~y~~L~~Ri~~~l~k~l~d~~~~l~t~YGAi~GL~~lG~~~vr~~i-------lP~ 345 (393)
.+++-.+|+-++-++++.++=... .+..-+.+++.+.+.+.|++. ...--|..+|..+..+.-+.++ -|+
T Consensus 510 ~d~k~~v~~t~~~~lGry~~wl~~-~~~~L~~vl~~L~~~l~~~~~--~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~ 586 (1023)
T 4hat_C 510 KDNKAVVASDIMYVVGQYPRFLKA-HWNFLRTVILKLFEFMHETHE--GVQDMACDTFIKIVQKCKYHFVIQQPRESEPF 586 (1023)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHH-CHHHHHHHHHHHHHHTTCSCH--HHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCH
T ss_pred CcchHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHhhcCCH--HHHHHHHHHHHHHHHHHHHHhhccCCCCCchh
Confidence 234557888999999988875543 355666777778888765432 3334477788888887666554 478
Q ss_pred hHHHHHhhhHhH
Q 016189 346 LELYLKFLEPEM 357 (393)
Q Consensus 346 l~~~~~~l~~~l 357 (393)
+..+...+....
T Consensus 587 ~~~il~~l~~~~ 598 (1023)
T 4hat_C 587 IQTIIRDIQKTT 598 (1023)
T ss_dssp HHHHHHTHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888877776654
No 71
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=87.97 E-value=1.7 Score=47.50 Aligned_cols=107 Identities=11% Similarity=0.098 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHHHhhcCCCc--cc--ccchhhhH-HHHHHHHhccc--c---CCCC---------CCcchHHHHHHHHHH
Q 016189 227 FSLLFALMRVARSLLRNPHI--HI--EPYLHQMM-PSVITCLVSKR--L---GNRF---------SDNHWDLRNFVADLI 287 (393)
Q Consensus 227 l~~L~~ll~~v~ALl~N~~l--~i--e~YlHqLl-pslltcll~k~--l---~~~~---------~~~h~~LR~~AA~lL 287 (393)
-......+.+..+++..+.. .+ .+|+.+|+ +.++.++.-+. . ...+ .++.|..|..|+.+|
T Consensus 306 ~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L 385 (960)
T 1wa5_C 306 DILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFL 385 (960)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHH
Confidence 34566677888888877653 12 28888888 77777774321 1 1111 235579999999999
Q ss_pred HHHHHHcCCCc-hhhHHHHHHHHHHHhcCCCCCchhHhHHHHHHHhh
Q 016189 288 ASICTRFGHVY-QNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL 333 (393)
Q Consensus 288 ~~I~~~~~~~y-~~L~~Ri~~~l~k~l~d~~~~l~t~YGAi~GL~~l 333 (393)
..++..|+... +.+-+-+...+.+.-.++......+.||+..+.++
T Consensus 386 ~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algai 432 (960)
T 1wa5_C 386 KELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTAL 432 (960)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHH
T ss_pred HHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHH
Confidence 99999988321 22333333333333234455678899999998888
No 72
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=86.97 E-value=2.2 Score=37.88 Aligned_cols=111 Identities=10% Similarity=0.085 Sum_probs=66.9
Q ss_pred chhhHHHHHHHHHhhccCChHHHHHHHHHHHHhhc-CCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHH
Q 016189 208 LVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLR-NPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADL 286 (393)
Q Consensus 208 LlPy~~~fi~e~v~~nl~nl~~L~~ll~~v~ALl~-N~~l~ie~YlHqLlpslltcll~k~l~~~~~~~h~~LR~~AA~l 286 (393)
.+|.++.++.+ .+.......+..+..|.. |+...-.-.-...+|.++.++- .+++.+|..|+..
T Consensus 55 ~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~---------~~~~~v~~~a~~~ 119 (252)
T 4db8_A 55 ALPALVQLLSS------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS---------SPNEQILQEALWA 119 (252)
T ss_dssp HHHHHHHGGGC------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGG---------CSCHHHHHHHHHH
T ss_pred cHHHHHHHHcC------CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHc---------CCCHHHHHHHHHH
Confidence 45666655432 234555566666777765 3332211111236777766652 2357999999999
Q ss_pred HHHHHHHcCCC-chhhHHHHHHHHHHHhcCCCCCchhHhHHHHHHHhhCH
Q 016189 287 IASICTRFGHV-YQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGP 335 (393)
Q Consensus 287 L~~I~~~~~~~-y~~L~~Ri~~~l~k~l~d~~~~l~t~YGAi~GL~~lG~ 335 (393)
|+.++...... -.-+...++..|.+.+.++ +.....-|+.+|..|..
T Consensus 120 L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~ 167 (252)
T 4db8_A 120 LSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIAS 167 (252)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHTT
T ss_pred HHHhhcCCchHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHc
Confidence 99997533221 1122334667788877654 56778888888888854
No 73
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=86.73 E-value=2.7 Score=36.93 Aligned_cols=108 Identities=9% Similarity=0.039 Sum_probs=67.9
Q ss_pred cchhhHHHHHHHHHhhccCChHHHHHHHHHHHHhhcC-CCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHH
Q 016189 207 PLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRN-PHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVAD 285 (393)
Q Consensus 207 ~LlPy~~~fi~e~v~~nl~nl~~L~~ll~~v~ALl~N-~~l~ie~YlHqLlpslltcll~k~l~~~~~~~h~~LR~~AA~ 285 (393)
..+|.++.++.+ .+..........+..|..+ +...-...-+..+|.++.++- +++..+|..|+.
T Consensus 44 g~i~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~---------~~~~~v~~~a~~ 108 (252)
T 4hxt_A 44 GGVEVLVKLLTS------TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT---------STDSEVQKEAAR 108 (252)
T ss_dssp THHHHHHHHTTC------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT---------CSSHHHHHHHHH
T ss_pred CCHHHHHHHHhC------CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHc---------CCCHHHHHHHHH
Confidence 356666655542 2455566677777777766 332222222346777777652 245799999999
Q ss_pred HHHHHHHHcCCCchhhHH-----HHHHHHHHHhcCCCCCchhHhHHHHHHHhhCH
Q 016189 286 LIASICTRFGHVYQNLQS-----RVTRTLLHAFLDPTKSLSQHYGAIQGLAALGP 335 (393)
Q Consensus 286 lL~~I~~~~~~~y~~L~~-----Ri~~~l~k~l~d~~~~l~t~YGAi~GL~~lG~ 335 (393)
.|..++.. .+..+. .++..+.+.+.+ .+......|+.+|..|..
T Consensus 109 ~L~~l~~~----~~~~~~~~~~~~~i~~L~~~l~~--~~~~~~~~a~~~L~~l~~ 157 (252)
T 4hxt_A 109 ALANIASG----PDEAIKAIVDAGGVEVLVKLLTS--TDSEVQKEAARALANIAS 157 (252)
T ss_dssp HHHHHTTS----CHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcC----CHHHHHHHHHCCCHHHHHHHHcC--CCHHHHHHHHHHHHHHHc
Confidence 99999852 123333 356677777664 346678889999888843
No 74
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=86.63 E-value=13 Score=40.91 Aligned_cols=125 Identities=10% Similarity=0.030 Sum_probs=71.0
Q ss_pred cccchhhHHHHHHHHHhhccCChHHHHHHHHHHHHhhc----CCCc--ccccchhhhHHHHHHHHhcccc----C-C---
Q 016189 205 LHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLR----NPHI--HIEPYLHQMMPSVITCLVSKRL----G-N--- 270 (393)
Q Consensus 205 L~~LlPy~~~fi~e~v~~nl~nl~~L~~ll~~v~ALl~----N~~l--~ie~YlHqLlpslltcll~k~l----~-~--- 270 (393)
..+.+..++.++...... .+...-...+.+...+.. .+.. ...+++.+|++.++..+.-..- . .
T Consensus 338 ~~~~l~~~l~~ll~~~~~--~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e 415 (1049)
T 3m1i_C 338 LRELLLNAHQYLIQLSKI--EERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGE 415 (1049)
T ss_dssp GHHHHHHHHHHHHHHHTS--SCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSC
T ss_pred hHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCc
Confidence 444444555555443222 243333333344444443 3332 3456777777666555422110 0 0
Q ss_pred -----CCCCcchHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHhcCCCCCchhHhHHHHHHHhhC
Q 016189 271 -----RFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALG 334 (393)
Q Consensus 271 -----~~~~~h~~LR~~AA~lL~~I~~~~~~~y~~L~~Ri~~~l~k~l~d~~~~l~t~YGAi~GL~~lG 334 (393)
+..++.|.+|..++.+|..+|..++. .+-+-+...+.+.+.++..+....-+|+.++.++.
T Consensus 416 ~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~---~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia 481 (1049)
T 3m1i_C 416 IVREFVKESDTIQLYKSEREVLVYLTHLNVI---DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSIS 481 (1049)
T ss_dssp EEECSSCCHHHHHHHHHHHHHHHHHHHHCHH---HHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTT
T ss_pred chHhhhccchHHHHHHHHHHHHHHHHccCHH---HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHh
Confidence 01224689999999999999977653 34455666666665545567788889999999884
No 75
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=85.79 E-value=11 Score=38.81 Aligned_cols=75 Identities=15% Similarity=0.168 Sum_probs=55.3
Q ss_pred ccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHhcCCCCCchhHhHHHH
Q 016189 249 EPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQ 328 (393)
Q Consensus 249 e~YlHqLlpslltcll~k~l~~~~~~~h~~LR~~AA~lL~~I~~~~~~~y~~L~~Ri~~~l~k~l~d~~~~l~t~YGAi~ 328 (393)
......++|.+..|+ .+.++.+|..|+..+..+++.+....+. ..++..+.+.|.| ......++|+.
T Consensus 116 ~~~~~~l~~~l~~~L---------~d~~~~VRk~A~~al~~i~~~~p~~~~~--~~~~~~l~~lL~d--~d~~V~~~A~~ 182 (591)
T 2vgl_B 116 DKITEYLCEPLRKCL---------KDEDPYVRKTAAVCVAKLHDINAQMVED--QGFLDSLRDLIAD--SNPMVVANAVA 182 (591)
T ss_dssp GGGHHHHHHHHHHHS---------SCSCHHHHHHHHHHHHHHHHSSCCCHHH--HHHHHHHHHTTSC--SCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc---------CCCChHHHHHHHHHHHHHHhhChhhccc--ccHHHHHHHHhCC--CChhHHHHHHH
Confidence 334555678888875 2457899999999999999954432211 3677888887764 56788999999
Q ss_pred HHHhhCHH
Q 016189 329 GLAALGPS 336 (393)
Q Consensus 329 GL~~lG~~ 336 (393)
.|..++.+
T Consensus 183 aL~~i~~~ 190 (591)
T 2vgl_B 183 ALSEISES 190 (591)
T ss_dssp HHHHHTTS
T ss_pred HHHHHHhh
Confidence 99999764
No 76
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=85.69 E-value=4.3 Score=35.51 Aligned_cols=140 Identities=12% Similarity=0.080 Sum_probs=81.4
Q ss_pred HHHHHHhhcCCchHHHHHH---HHhhhhc-CCcc------cchhhHHHHHHHHHhhccCChHHHHHHHHHHHHhh-cCCC
Q 016189 177 DKIRELTVSRSNSTVFKQA---LLSLAMD-SGLH------PLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLL-RNPH 245 (393)
Q Consensus 177 ~~It~a~~~~~~~~~~~~a---L~sL~tD-~gL~------~LlPy~~~fi~e~v~~nl~nl~~L~~ll~~v~ALl-~N~~ 245 (393)
..+.+.+- .++...+..| |..|..+ +... ..+|.++.++.+ .+.......+..+..|. .++.
T Consensus 47 ~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~------~~~~v~~~a~~~L~~l~~~~~~ 119 (252)
T 4hxt_A 47 EVLVKLLT-STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS------TDSEVQKEAARALANIASGPDE 119 (252)
T ss_dssp HHHHHHTT-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC------SSHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHh-CCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcC------CCHHHHHHHHHHHHHHHcCCHH
Confidence 44444333 3444555543 4555544 2211 346666655541 35666677778888888 4444
Q ss_pred cccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHcCCC-chhhHHHHHHHHHHHhcCCCCCchhHh
Q 016189 246 IHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHV-YQNLQSRVTRTLLHAFLDPTKSLSQHY 324 (393)
Q Consensus 246 l~ie~YlHqLlpslltcll~k~l~~~~~~~h~~LR~~AA~lL~~I~~~~~~~-y~~L~~Ri~~~l~k~l~d~~~~l~t~Y 324 (393)
..-...-+..+|.++.++- ++++.+|..|+..|+.++...... -.-+...++..|.+.+.+ .+.....
T Consensus 120 ~~~~~~~~~~i~~L~~~l~---------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~ 188 (252)
T 4hxt_A 120 AIKAIVDAGGVEVLVKLLT---------STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS--TDSEVQK 188 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTT---------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHc---------CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCC--CCHHHHH
Confidence 3322223456787777652 245899999999999998631110 011223366778887764 4457778
Q ss_pred HHHHHHHhhC
Q 016189 325 GAIQGLAALG 334 (393)
Q Consensus 325 GAi~GL~~lG 334 (393)
.|+..|..+.
T Consensus 189 ~a~~~L~~l~ 198 (252)
T 4hxt_A 189 EAARALANIA 198 (252)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 8888888874
No 77
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=85.20 E-value=5.1 Score=40.15 Aligned_cols=112 Identities=11% Similarity=0.031 Sum_probs=72.2
Q ss_pred ccchhhHHHHHHHHHhhccCChHHHHHHHHHHHHhhcCC-CcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHH
Q 016189 206 HPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNP-HIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVA 284 (393)
Q Consensus 206 ~~LlPy~~~fi~e~v~~nl~nl~~L~~ll~~v~ALl~N~-~l~ie~YlHqLlpslltcll~k~l~~~~~~~h~~LR~~AA 284 (393)
...+|.++..+.+ .+.......+..+..|..+. ...-......++|.++..+- +....+|..|+
T Consensus 214 ~~~l~~L~~ll~~------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~---------~~d~~v~~~a~ 278 (530)
T 1wa5_B 214 CNAMEPILGLFNS------NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY---------SMDTETLVDAC 278 (530)
T ss_dssp TTCHHHHHHGGGS------CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTT---------CCCHHHHHHHH
T ss_pred cCcHHHHHHHhcc------CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHc---------CCCHHHHHHHH
Confidence 3567777766543 45667777888888888764 22224455678888877651 23468999999
Q ss_pred HHHHHHHHHcCCCch-hhHHHHHHHHHHHhcCCCCCchhHhHHHHHHHhhC
Q 016189 285 DLIASICTRFGHVYQ-NLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALG 334 (393)
Q Consensus 285 ~lL~~I~~~~~~~y~-~L~~Ri~~~l~k~l~d~~~~l~t~YGAi~GL~~lG 334 (393)
..|+.++........ -+...++..|.+.+.++ +......|+..|..+.
T Consensus 279 ~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~--~~~v~~~a~~~L~~l~ 327 (530)
T 1wa5_B 279 WAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE--STLVQTPALRAVGNIV 327 (530)
T ss_dssp HHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCS--CHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCC--ChhhHHHHHHHHHHHH
Confidence 999999853211001 11224556777777653 4566778888888885
No 78
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=84.29 E-value=19 Score=35.84 Aligned_cols=112 Identities=12% Similarity=0.059 Sum_probs=69.4
Q ss_pred ccchhhHHHHHHHHHhhccCChHHHHHHHHHHHHhhcCCC-cccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHH
Q 016189 206 HPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPH-IHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVA 284 (393)
Q Consensus 206 ~~LlPy~~~fi~e~v~~nl~nl~~L~~ll~~v~ALl~N~~-l~ie~YlHqLlpslltcll~k~l~~~~~~~h~~LR~~AA 284 (393)
...+|.|+..+.+ .+.......+..+..|..+.. ..-...-+..+|.++.++-. ....+|..|+
T Consensus 172 ~g~i~~Lv~lL~~------~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~---------~~~~v~~~a~ 236 (530)
T 1wa5_B 172 ADAVPLFIQLLYT------GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS---------NKPSLIRTAT 236 (530)
T ss_dssp TTCHHHHHHHHHH------CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS---------CCHHHHHHHH
T ss_pred CCCHHHHHHHHcC------CCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc---------CCHHHHHHHH
Confidence 3568888888764 245555566666666665432 11111123567777776522 4578999999
Q ss_pred HHHHHHHHHc-CCCchhhHHHHHHHHHHHhcCCCCCchhHhHHHHHHHhhC
Q 016189 285 DLIASICTRF-GHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALG 334 (393)
Q Consensus 285 ~lL~~I~~~~-~~~y~~L~~Ri~~~l~k~l~d~~~~l~t~YGAi~GL~~lG 334 (393)
..|+.+|... ...-......++..|.+.+.++ ......-|+.+|..|.
T Consensus 237 ~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~L~ 285 (530)
T 1wa5_B 237 WTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM--DTETLVDACWAISYLS 285 (530)
T ss_dssp HHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCC--CHHHHHHHHHHHHHHh
Confidence 9999999743 1112223345667777877654 3566777777777773
No 79
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=83.79 E-value=3.5 Score=36.55 Aligned_cols=110 Identities=11% Similarity=0.145 Sum_probs=71.0
Q ss_pred chhhHHHHHHHHHhhccCChHHHHHHHHHHHHhhcCCCcccccch-hhhHHHHHHHHhccccCCCCCCcchHHHHHHHHH
Q 016189 208 LVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYL-HQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADL 286 (393)
Q Consensus 208 LlPy~~~fi~e~v~~nl~nl~~L~~ll~~v~ALl~N~~l~ie~Yl-HqLlpslltcll~k~l~~~~~~~h~~LR~~AA~l 286 (393)
.+|.++..+.+ .+.......+..+..|..++....+..+ ...+|.++.++- +.++.+|..|+..
T Consensus 97 ~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~---------~~~~~v~~~a~~~ 161 (252)
T 4db8_A 97 ALPALVQLLSS------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS---------SPNEQILQEALWA 161 (252)
T ss_dssp HHHHHHHGGGC------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGG---------CSCHHHHHHHHHH
T ss_pred CHHHHHHHHcC------CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHh---------CCCHHHHHHHHHH
Confidence 56666655432 3566677778888888888776633333 357888877761 2468999999999
Q ss_pred HHHHHHHcCCCc-hhhHHHHHHHHHHHhcCCCCCchhHhHHHHHHHhhC
Q 016189 287 IASICTRFGHVY-QNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALG 334 (393)
Q Consensus 287 L~~I~~~~~~~y-~~L~~Ri~~~l~k~l~d~~~~l~t~YGAi~GL~~lG 334 (393)
|..++......- .-....++..|.+.+.++ +.....-|+..|..|.
T Consensus 162 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 162 LSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIA 208 (252)
T ss_dssp HHHHTTSCHHHHHHHHHTTCHHHHHHGGGCS--SHHHHHHHHHHHHHHT
T ss_pred HHHHHcCChHHHHHHHHCCCHHHHHHHHCCC--CHHHHHHHHHHHHHHh
Confidence 999985321100 001223456778877654 5667788888888873
No 80
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=83.44 E-value=17 Score=34.12 Aligned_cols=147 Identities=18% Similarity=0.185 Sum_probs=88.0
Q ss_pred HHHHHHHHHhhccCChHHHHHHHHHHHHhhc---CCCcccccc-hhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHH
Q 016189 212 FTYFISEEVTRSLKNFSLLFALMRVARSLLR---NPHIHIEPY-LHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLI 287 (393)
Q Consensus 212 ~~~fi~e~v~~nl~nl~~L~~ll~~v~ALl~---N~~l~ie~Y-lHqLlpslltcll~k~l~~~~~~~h~~LR~~AA~lL 287 (393)
++.|+.-.+.. +|...+...+.++.+|+. -....+..| .-.++|.+ +.| +|. ..=.+|+.+-.++
T Consensus 88 l~kw~~lr~~d--~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~L----veK-lGd----~k~~vR~~~r~il 156 (266)
T 2of3_A 88 LLKWCTLRFFE--TNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYL----LLK-TGE----AKDNMRTSVRDIV 156 (266)
T ss_dssp HHHHHHHHTTS--CCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH----HHG-GGC----SSHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHH----HHH-hCC----ChHHHHHHHHHHH
Confidence 34555433332 365565555555555542 234455555 35566654 444 233 3347999999999
Q ss_pred HHHHHHcCCCchhhHHHHHHHHHHHhcCCCCCchhHhHHHHHHHhh----CHHhHHHhcccchHHHH---HhhhHhHhhh
Q 016189 288 ASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL----GPSVVHLLILPNLELYL---KFLEPEMLLE 360 (393)
Q Consensus 288 ~~I~~~~~~~y~~L~~Ri~~~l~k~l~d~~~~l~t~YGAi~GL~~l----G~~~vr~~ilP~l~~~~---~~l~~~l~~~ 360 (393)
..++.-|+. +++...+...|. +|+.-+.-|.+..+..+ |.. | ..++ ..|-..+
T Consensus 157 ~~l~~v~~~------~~v~~~l~~g~k--sKN~R~R~e~l~~l~~li~~~G~~-------~--~~~l~~~~~ia~ll--- 216 (266)
T 2of3_A 157 NVLSDVVGP------LKMTPMLLDALK--SKNARQRSECLLVIEYYITNAGIS-------P--LKSLSVEKTVAPFV--- 216 (266)
T ss_dssp HHHHHHHCH------HHHHHHHHHGGG--CSCHHHHHHHHHHHHHHHHHHCSG-------G--GGGGCHHHHHGGGG---
T ss_pred HHHHHHCCH------HHHHHHHHHHHc--cCCHHHHHHHHHHHHHHHHhcCCC-------c--cccccchHHHHHHH---
Confidence 999987753 367777888885 57888888888776665 433 1 1222 2222223
Q ss_pred hhhhhhHHHHHHHHHhHhhhhhhcccccc
Q 016189 361 KQKNEMKRHEAWRVYGALQVDFFFKEFLY 389 (393)
Q Consensus 361 ~~~~~~~~~~a~~v~~~l~~a~~~~~~~~ 389 (393)
.+++..+|..|..+...+-.-+|=+=|-|
T Consensus 217 ~D~d~~VR~aAl~~lve~y~~~Gd~v~k~ 245 (266)
T 2of3_A 217 GDKDVNVRNAAINVLVACFKFEGDQMWKA 245 (266)
T ss_dssp GCSSHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 24567788888888877766655443333
No 81
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=83.13 E-value=26 Score=31.50 Aligned_cols=15 Identities=27% Similarity=0.129 Sum_probs=7.7
Q ss_pred chhHhHHHHHHHhhC
Q 016189 320 LSQHYGAIQGLAALG 334 (393)
Q Consensus 320 l~t~YGAi~GL~~lG 334 (393)
......|+.+|..+|
T Consensus 206 ~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 206 EEVRIEAIIGLSYRK 220 (280)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhC
Confidence 344455555555555
No 82
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=83.00 E-value=8.1 Score=35.47 Aligned_cols=129 Identities=16% Similarity=0.205 Sum_probs=70.0
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHhhhhcCCcccchhhHHHHHHHHHhhccCChHHHHHHHHHHHHhhcC---CCcccccc
Q 016189 175 YFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRN---PHIHIEPY 251 (393)
Q Consensus 175 yf~~It~a~~~~~~~~~~~~aL~sL~tD~gL~~LlPy~~~fi~e~v~~nl~nl~~L~~ll~~v~ALl~N---~~l~ie~Y 251 (393)
+...+.+-+++......+..|++.|-.=-....-...++..+..... .+|.......+..+..++.+ ..+...+.
T Consensus 103 ~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~--~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~ 180 (278)
T 4ffb_C 103 WTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFE--KKLPKLIAAAANCVYELMAAFGLTNVNVQTF 180 (278)
T ss_dssp HHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGG--CSCHHHHHHHHHHHHHHHHHHTTTTCCHHHH
T ss_pred HHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh--ccCHHHHHHHHHHHHHHHHHhCCCcCCchhH
Confidence 34445554555444445555554432211111112223333333322 24665555566666666655 44556666
Q ss_pred hhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHcCCCc--------hhhHHHHHHHHHHHhc
Q 016189 252 LHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVY--------QNLQSRVTRTLLHAFL 314 (393)
Q Consensus 252 lHqLlpslltcll~k~l~~~~~~~h~~LR~~AA~lL~~I~~~~~~~y--------~~L~~Ri~~~l~k~l~ 314 (393)
+-.+++.+..|+ + +..=.+|+-|.+++..+.+..|... .+|+|-..+.+-+.|-
T Consensus 181 l~~i~~~l~k~l-----~----d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp~~~k~le~~f~ 242 (278)
T 4ffb_C 181 LPELLKHVPQLA-----G----HGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLHKLFA 242 (278)
T ss_dssp HHHHGGGHHHHH-----T----CSSHHHHHHHHHHHHHHHTC-----------CTTSSCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHH-----h----CCcHHHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCCHHHHHHHHHHHH
Confidence 777777777775 2 2234899999999999998887432 5566666666666653
No 83
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=82.72 E-value=19 Score=34.36 Aligned_cols=112 Identities=9% Similarity=0.064 Sum_probs=71.7
Q ss_pred cchhhHHHHHHHHHhhccCChHHHHHHHHHHHHhhcCC--CcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHH
Q 016189 207 PLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNP--HIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVA 284 (393)
Q Consensus 207 ~LlPy~~~fi~e~v~~nl~nl~~L~~ll~~v~ALl~N~--~l~ie~YlHqLlpslltcll~k~l~~~~~~~h~~LR~~AA 284 (393)
..+|.++.++.+ -.+.......+..+..|..+. ... ...+..++|.++.++- +++..+|..|+
T Consensus 149 ~~i~~L~~~l~~-----~~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~l~~L~~~l~---------~~~~~v~~~a~ 213 (450)
T 2jdq_A 149 NILPPLLQLFSK-----QNRLTMTRNAVWALSNLCRGKSPPPE-FAKVSPCLNVLSWLLF---------VSDTDVLADAC 213 (450)
T ss_dssp TCHHHHHHHTTS-----CCCHHHHHHHHHHHHHHHCCSSSCCC-GGGTGGGHHHHHHHTT---------CCCHHHHHHHH
T ss_pred CCHHHHHHHhcC-----CCCHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHc---------cCCHHHHHHHH
Confidence 467777776642 134566667778888888764 333 3345888998888752 23468999999
Q ss_pred HHHHHHHHHcCCCc-hhhHHHHHHHHHHHhcCCCCCchhHhHHHHHHHhhCH
Q 016189 285 DLIASICTRFGHVY-QNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGP 335 (393)
Q Consensus 285 ~lL~~I~~~~~~~y-~~L~~Ri~~~l~k~l~d~~~~l~t~YGAi~GL~~lG~ 335 (393)
..|+.++....... .-....++..|.+.+.+ .+......|+..|..+..
T Consensus 214 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~ 263 (450)
T 2jdq_A 214 WALSYLSDGPNDKIQAVIDAGVCRRLVELLMH--NDYKVVSPALRAVGNIVT 263 (450)
T ss_dssp HHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTC--SCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCC--CchhHHHHHHHHHHHHhh
Confidence 99999985311100 01122355667776654 456777888888888743
No 84
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=82.15 E-value=4.8 Score=38.25 Aligned_cols=57 Identities=16% Similarity=0.167 Sum_probs=46.7
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHhCCCccCHhhHHHHhhh
Q 016189 10 EVIAQSIGVYNLSSDVALALAPDVE---Y-RVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (393)
Q Consensus 10 ~~iaes~G~~~ls~~~a~~La~dve---~-rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~ 67 (393)
+..++..|+ .+++++.+.|++... . .+.++++.|..++...+++.+|.+||..|++.
T Consensus 269 ~~~~~~~~~-~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 269 RIRCEEEDV-EMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp HHHHHHTTC-CBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHcCC-CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 334446677 599999999999887 2 36678888888888889999999999999975
No 85
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=82.07 E-value=20 Score=34.24 Aligned_cols=140 Identities=16% Similarity=0.187 Sum_probs=82.5
Q ss_pred HHHHHhhcCCchHHHHH---HHHhhhhcC--C-----cccchhhHHHHHHHHHhhccCChHHHHHHHHHHHHhhcCCCcc
Q 016189 178 KIRELTVSRSNSTVFKQ---ALLSLAMDS--G-----LHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIH 247 (393)
Q Consensus 178 ~It~a~~~~~~~~~~~~---aL~sL~tD~--g-----L~~LlPy~~~fi~e~v~~nl~nl~~L~~ll~~v~ALl~N~~l~ 247 (393)
.+.+.+-+..+...++. +|..|..+. . +..++|.++..+.+ .+..........+..|..+..-.
T Consensus 153 ~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~------~~~~v~~~a~~~L~~l~~~~~~~ 226 (450)
T 2jdq_A 153 PLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFV------SDTDVLADACWALSYLSDGPNDK 226 (450)
T ss_dssp HHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTC------CCHHHHHHHHHHHHHHTSSSHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHcc------CCHHHHHHHHHHHHHHHCCCcHH
Confidence 34443332234455554 456665442 2 35677877776542 34555666667777777654322
Q ss_pred cccch-hhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHcCCCch-hhHHHHHHHHHHHhcCCCCCchhHhH
Q 016189 248 IEPYL-HQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQ-NLQSRVTRTLLHAFLDPTKSLSQHYG 325 (393)
Q Consensus 248 ie~Yl-HqLlpslltcll~k~l~~~~~~~h~~LR~~AA~lL~~I~~~~~~~y~-~L~~Ri~~~l~k~l~d~~~~l~t~YG 325 (393)
..... ..++|.++.++- +..|.+|..|+..|+.++........ -+...++..+.+.+.++ +...+..
T Consensus 227 ~~~~~~~~~i~~L~~ll~---------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~vr~~ 295 (450)
T 2jdq_A 227 IQAVIDAGVCRRLVELLM---------HNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP--KESIKKE 295 (450)
T ss_dssp HHHHHHTTTHHHHHHHTT---------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCS--SHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHC---------CCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCC--CHHHHHH
Confidence 21111 247787777652 34689999999999999863221100 11224667777877654 4567788
Q ss_pred HHHHHHhhC
Q 016189 326 AIQGLAALG 334 (393)
Q Consensus 326 Ai~GL~~lG 334 (393)
|+..|..+.
T Consensus 296 a~~~L~~l~ 304 (450)
T 2jdq_A 296 ACWTISNIT 304 (450)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 888888885
No 86
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=81.82 E-value=44 Score=37.07 Aligned_cols=146 Identities=14% Similarity=0.223 Sum_probs=97.0
Q ss_pred HHHhhhhcCCcccchhhHHHHHHHHHhhccCChHHHHHHHHHHHHhhcCCCc--ccccchhhhHHHHHHHHhccccCCCC
Q 016189 195 ALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHI--HIEPYLHQMMPSVITCLVSKRLGNRF 272 (393)
Q Consensus 195 aL~sL~tD~gL~~LlPy~~~fi~e~v~~nl~nl~~L~~ll~~v~ALl~N~~l--~ie~YlHqLlpslltcll~k~l~~~~ 272 (393)
++.++-...+....+|+ . +.+.+..-+.|-..-..-|-.+.+|...... ..|||+-.++|.++.+.-
T Consensus 37 ~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~-------- 105 (986)
T 2iw3_A 37 EVASFLNGNIIEHDVPE--H-FFGELAKGIKDKKTAANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAG-------- 105 (986)
T ss_dssp HHHHHHTSSCSSSSCCH--H-HHHHHHHHHTSHHHHHHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTT--------
T ss_pred HHHHHHhccccccccch--h-HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhc--------
Confidence 47777666666677774 3 4445555554432227788888999954433 779999999999888852
Q ss_pred CCcchHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHhcCCCCCchhHhHHHHHHHhhCHHhHHHhcccchHHHHHh
Q 016189 273 SDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKF 352 (393)
Q Consensus 273 ~~~h~~LR~~AA~lL~~I~~~~~~~y~~L~~Ri~~~l~k~l~d~~~~l~t~YGAi~GL~~lG~~~vr~~ilP~l~~~~~~ 352 (393)
|..=..|+-|...+..|++.+.. .--..+...+.+.+.+ ..-..+.-||+..+..|-..+ ...+-=.++.+..-
T Consensus 106 -dk~~~v~~aa~~~~~~~~~~~~~---~a~~~~~~~~~~~~~~-~~kw~~k~~~l~~~~~~~~~~-~~~~~~~~~~~~p~ 179 (986)
T 2iw3_A 106 -NKDKEIQSVASETLISIVNAVNP---VAIKALLPHLTNAIVE-TNKWQEKIAILAAFSAMVDAA-KDQVALRMPELIPV 179 (986)
T ss_dssp -CSSHHHHHHHHHHHHHHHHHSCG---GGHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred -CCchHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHHHh-HHHHHHhccchhcc
Confidence 23337999999999999998874 2236777777777643 345899999999998886543 22222234444444
Q ss_pred hhHhH
Q 016189 353 LEPEM 357 (393)
Q Consensus 353 l~~~l 357 (393)
+...|
T Consensus 180 ~~~~~ 184 (986)
T 2iw3_A 180 LSETM 184 (986)
T ss_dssp HHHHT
T ss_pred hHhhc
Confidence 44444
No 87
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=81.76 E-value=6.2 Score=42.86 Aligned_cols=85 Identities=11% Similarity=0.094 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHH
Q 016189 230 LFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTL 309 (393)
Q Consensus 230 L~~ll~~v~ALl~N~~l~ie~YlHqLlpslltcll~k~l~~~~~~~h~~LR~~AA~lL~~I~~~~~~~y~~L~~Ri~~~l 309 (393)
+..+-++.+.+-.|+ .|+..++|.++.++ . + .++..|+..+..+|+.++..-..--+.|+..|
T Consensus 527 ~~~l~~~~~~l~~~~-----~~l~~vl~~l~~~l-~------~-----~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l 589 (971)
T 2x1g_F 527 LETMGSYCNWLMENP-----AYIPPAINLLVRGL-N------S-----SMSAQATLGLKELCRDCQLQLKPYADPLLNAC 589 (971)
T ss_dssp HHHHHHTHHHHC---------CHHHHHHHHHHHH-H------S-----SCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCH-----HHHHHHHHHHHHHh-C------h-----HHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 445667777666665 68889999888887 2 1 46999999999999887644333344566777
Q ss_pred HHHhcCCCCC---chhHhHHHHHHH
Q 016189 310 LHAFLDPTKS---LSQHYGAIQGLA 331 (393)
Q Consensus 310 ~k~l~d~~~~---l~t~YGAi~GL~ 331 (393)
.+.+..+.-+ ....|.|+.-+.
T Consensus 590 ~~~l~~~~~~~~~~~~~~~ai~~i~ 614 (971)
T 2x1g_F 590 HASLNTGRMKNSDSVRLMFSIGKLM 614 (971)
T ss_dssp HHHHHSTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCChHHHHHHHHHHHHHH
Confidence 7777654323 334455555543
No 88
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=81.47 E-value=24 Score=29.96 Aligned_cols=49 Identities=22% Similarity=0.285 Sum_probs=26.3
Q ss_pred cchHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHhcCCCCCchhHhHHHHHHHhhCH
Q 016189 275 NHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGP 335 (393)
Q Consensus 275 ~h~~LR~~AA~lL~~I~~~~~~~y~~L~~Ri~~~l~k~l~d~~~~l~t~YGAi~GL~~lG~ 335 (393)
.+|.+|..|+..|+.+.. +.....|.+.+.| .+......|+.+|..+|.
T Consensus 119 ~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d--~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 119 EDWFVRIAAAFALGEIGD----------ERAVEPLIKALKD--EDGWVRQSAADALGEIGG 167 (201)
T ss_dssp SSHHHHHHHHHHHHHHTC----------GGGHHHHHHHTTC--SSHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCc
Confidence 456666666666665521 1233344444443 244566666666666664
No 89
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=79.34 E-value=1.4 Score=49.17 Aligned_cols=98 Identities=13% Similarity=0.140 Sum_probs=62.2
Q ss_pred CChHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcc-hHHHHHHHHHHHHHHHHcCCCchhhHH
Q 016189 225 KNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNH-WDLRNFVADLIASICTRFGHVYQNLQS 303 (393)
Q Consensus 225 ~nl~~L~~ll~~v~ALl~N~~l~ie~YlHqLlpslltcll~k~l~~~~~~~h-~~LR~~AA~lL~~I~~~~~~~y~~L~~ 303 (393)
.++ .-..+|.+++.+.-...+.+..--. ..+..+++. . ..|++ -.+|+.||.+|+.+++ ++.......
T Consensus 814 ~sW-~R~~~L~~lq~~~f~n~f~l~~~~~---~~i~~~v~~-~----L~D~q~~EVRe~Aa~tLsgll~-c~~~~~~~~- 882 (997)
T 1vsy_5 814 SSN-QTKLQLAFIQHFLSAELLQLTEEEK---NKILEFVVS-N----LYNEQFVEVRVRAASILSDIVH-NWKEEQPLL- 882 (997)
T ss_dssp CSS-SHHHHHHHHHHHHHHHTTTSCTTHH---HHTHHHHTT-T----TTCSSCHHHHHHHHHHHHHHHH-SCCSHHHHH-
T ss_pred CcH-HHHHHHHHHHHHHHHHHHHcCHHHH---HHHHHHHHH-H----hcCCccHHHHHHHHHHHHHHHH-cCCchhhHH-
Confidence 356 6667888888888777666665433 345555432 1 24677 8999999999999984 331112222
Q ss_pred HHHHHHHHHhcC---C-------CCCchhHhHHHHHHHhh
Q 016189 304 RVTRTLLHAFLD---P-------TKSLSQHYGAIQGLAAL 333 (393)
Q Consensus 304 Ri~~~l~k~l~d---~-------~~~l~t~YGAi~GL~~l 333 (393)
.++..|.+.+.. . .++.....|||.||+|+
T Consensus 883 ~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~Al 922 (997)
T 1vsy_5 883 SLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAI 922 (997)
T ss_dssp HHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHH
Confidence 455566555432 0 12336889999999997
No 90
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=78.74 E-value=1.8 Score=41.28 Aligned_cols=60 Identities=17% Similarity=0.061 Sum_probs=52.5
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhh
Q 016189 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (393)
Q Consensus 7 ~~i~~iaes~G~~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~ 67 (393)
+.|+.++++.|+ .+++++++.|++-++-.++.+.++.-|.+-.++.+++|.+||...+-.
T Consensus 149 ~~l~~~~~~~g~-~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~ 208 (343)
T 1jr3_D 149 RWVAARAKQLNL-ELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVND 208 (343)
T ss_dssp HHHHHHHHHTTC-EECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhh
Confidence 467789999999 599999999999999999999999999888766679999999988743
No 91
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=78.45 E-value=27 Score=36.35 Aligned_cols=78 Identities=13% Similarity=0.084 Sum_probs=57.0
Q ss_pred ccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHhcCCCCCchhHhHHHH
Q 016189 249 EPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQ 328 (393)
Q Consensus 249 e~YlHqLlpslltcll~k~l~~~~~~~h~~LR~~AA~lL~~I~~~~~~~y~~L~~Ri~~~l~k~l~d~~~~l~t~YGAi~ 328 (393)
..++..++|.+..|+.+ .+.+..+|..|+-.+.++++.+....+. +.....+.+.|.| ++.+..++|+.
T Consensus 141 ~e~~~~l~~~v~~~l~~-------~d~~~~VRK~A~~al~kl~~~~p~~~~~--~~~~~~l~~lL~d--~d~~V~~~a~~ 209 (621)
T 2vgl_A 141 REMAEAFAGEIPKILVA-------GDTMDSVKQSAALCLLRLYRTSPDLVPM--GDWTSRVVHLLND--QHLGVVTAATS 209 (621)
T ss_dssp HHHHHHHTTHHHHHHHC-------SSSCHHHHHHHHHHHHHHHHHCGGGCCC--CSCHHHHHHHTTC--SCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC-------CCCCHHHHHHHHHHHHHHHHhChhhcCc--hhHHHHHHHHhCC--CCccHHHHHHH
Confidence 34667889999999854 2457799999999999999976544431 1556666666643 56688999999
Q ss_pred HHHhhCHHh
Q 016189 329 GLAALGPSV 337 (393)
Q Consensus 329 GL~~lG~~~ 337 (393)
.|..+..+.
T Consensus 210 ~l~~i~~~~ 218 (621)
T 2vgl_A 210 LITTLAQKN 218 (621)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 988886543
No 92
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=78.23 E-value=12 Score=38.87 Aligned_cols=139 Identities=11% Similarity=0.108 Sum_probs=82.4
Q ss_pred HHHHHHHHhhcCCchHHHHHHHH---hhhhcCCcccchhhHHHHHHHHHhhccCChHHHHHHHHHHHHhhcCCCcccccc
Q 016189 175 YFDKIRELTVSRSNSTVFKQALL---SLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPY 251 (393)
Q Consensus 175 yf~~It~a~~~~~~~~~~~~aL~---sL~tD~gL~~LlPy~~~fi~e~v~~nl~nl~~L~~ll~~v~ALl~N~~l~ie~Y 251 (393)
|+..|.. |+..++...|+.||+ .|.+...+..+++.|..|+.+ .+...-..+.+.+..+..+- .+-
T Consensus 351 ~~~~i~~-~l~d~d~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~~------~d~e~r~~~v~~I~~la~k~----~~~ 419 (618)
T 1w63_A 351 HRSTIVD-CLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDS------CEPEFKADCASGIFLAAEKY----APS 419 (618)
T ss_dssp GHHHHHH-GGGSSCHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHH------CCHHHHHHHHHHHHHHHHSS----CCC
T ss_pred HHHHHHH-HccCCChhHHHHHHHHHHHHcccccHHHHHHHHHHHHHh------CCHHHHHHHHHHHHHHHHHh----Ccc
Confidence 4455555 445566667777665 556677788899999998875 23344444555555555531 123
Q ss_pred hhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHhcCCCCCchhHhHHHHHHH
Q 016189 252 LHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLA 331 (393)
Q Consensus 252 lHqLlpslltcll~k~l~~~~~~~h~~LR~~AA~lL~~I~~~~~~~y~~L~~Ri~~~l~k~l~d~~~~l~t~YGAi~GL~ 331 (393)
.+..++.++..+-.. +. ..++.+...+..|+.+ +|.++..++..+.+.+.++...-+..-.+++.|.
T Consensus 420 ~~~~v~~ll~lL~~~--~~-------~v~~~~~~~l~~ii~~----~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilG 486 (618)
T 1w63_A 420 KRWHIDTIMRVLTTA--GS-------YVRDDAVPNLIQLITN----SVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIG 486 (618)
T ss_dssp HHHHHHHHHHHHHHT--GG-------GSCSSHHHHHHHHHHH----SCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc--cc-------hhHHHHHHHHHHHHhc----ChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 444455555444221 11 1233345556667765 5678888888888888754333333346788888
Q ss_pred hhCHHh
Q 016189 332 ALGPSV 337 (393)
Q Consensus 332 ~lG~~~ 337 (393)
++|...
T Consensus 487 Ey~~~i 492 (618)
T 1w63_A 487 EYGDLL 492 (618)
T ss_dssp HHHHHH
T ss_pred hhHHHh
Confidence 887543
No 93
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=77.23 E-value=33 Score=29.23 Aligned_cols=50 Identities=24% Similarity=0.321 Sum_probs=34.3
Q ss_pred CcchHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHhcCCCCCchhHhHHHHHHHhhCH
Q 016189 274 DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGP 335 (393)
Q Consensus 274 ~~h~~LR~~AA~lL~~I~~~~~~~y~~L~~Ri~~~l~k~l~d~~~~l~t~YGAi~GL~~lG~ 335 (393)
+.+|.+|..|+..|+.+.. + .....|.+.+.| .+...+..|+.+|..+|.
T Consensus 123 d~~~~vr~~a~~aL~~~~~------~----~~~~~L~~~l~d--~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 123 DEDWFVRIAAAFALGEIGD------E----RAVEPLIKALKD--EDGWVRQSAADALGEIGG 172 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCC------G----GGHHHHHHHTTC--SSHHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHHcCC------H----HHHHHHHHHHcC--CCHHHHHHHHHHHHHhCc
Confidence 4677888888888887732 2 244455665544 346778888888888876
No 94
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=77.10 E-value=6.6 Score=40.42 Aligned_cols=125 Identities=10% Similarity=0.076 Sum_probs=70.5
Q ss_pred hHHHHHHHH---hhhhcCCcccchhhHHHHHHHHHhhccCChHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhc
Q 016189 189 STVFKQALL---SLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVS 265 (393)
Q Consensus 189 ~~~~~~aL~---sL~tD~gL~~LlPy~~~fi~e~v~~nl~nl~~L~~ll~~v~ALl~N~~l~ie~YlHqLlpslltcll~ 265 (393)
...|++|++ .+.++..++.+++.+..|+.+. +...-....+-+..+..+ ..+.....++.++..+-
T Consensus 332 ~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~------d~~~r~~~v~aI~~la~~----~~~~~~~~v~~Ll~ll~- 400 (591)
T 2vgl_B 332 IYVKLEKLDIMIRLASQANIAQVLAELKEYATEV------DVDFVRKAVRAIGRCAIK----VEQSAERCVSTLLDLIQ- 400 (591)
T ss_dssp HHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSS------CHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcC------CHHHHHHHHHHHHHHHHh----ChhHHHHHHHHHHHHHc-
Confidence 344555543 3455666666776666555321 233333344444444433 12333445555555441
Q ss_pred cccCCCCCCcchHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHhcCCCCCchhHhHHHHHHHhhCHHh
Q 016189 266 KRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSV 337 (393)
Q Consensus 266 k~l~~~~~~~h~~LR~~AA~lL~~I~~~~~~~y~~L~~Ri~~~l~k~l~d~~~~l~t~YGAi~GL~~lG~~~ 337 (393)
+....+|+.+...+..|++++.. ++..++..|.+.+-+ ......+..+++.|...|...
T Consensus 401 --------~~~~~v~~e~i~~l~~ii~~~p~----~~~~~v~~L~~~l~~-~~~~~~~~~~~wilGey~~~~ 459 (591)
T 2vgl_B 401 --------TKVNYVVQEAIVVIRDIFRKYPN----KYESIIATLCENLDS-LDEPDARAAMIWIVGEYAERI 459 (591)
T ss_dssp --------TCCHHHHHHHHHHHHHHHHHSCS----SCCTTHHHHHHTTTT-CCSHHHHHHHHHHHHTTCTTC
T ss_pred --------ccchHHHHHHHHHHHHHHHHCcc----hHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHcccccc
Confidence 12346788888888888887554 455566667776543 334455788999999998754
No 95
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=76.18 E-value=25 Score=34.83 Aligned_cols=112 Identities=8% Similarity=0.015 Sum_probs=67.9
Q ss_pred cchhhHHHHHHHHHhhccCChHHHHHHHHHHHHhhcCCCcccccc-hhhhHHHHHHHHhccccCCCCCCcchHHHHHHHH
Q 016189 207 PLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPY-LHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVAD 285 (393)
Q Consensus 207 ~LlPy~~~fi~e~v~~nl~nl~~L~~ll~~v~ALl~N~~l~ie~Y-lHqLlpslltcll~k~l~~~~~~~h~~LR~~AA~ 285 (393)
..+|.|+.++.+ .+.......+..+..|..+..-.-+.. -+..+|+++.++- ...++.+|..|+.
T Consensus 160 g~i~~L~~lL~~------~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~--------~~~~~~v~~~a~~ 225 (528)
T 4b8j_A 160 GAVPIFVKLLGS------SSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLN--------EHTKLSMLRNATW 225 (528)
T ss_dssp THHHHHHHHTTC------SCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCC--------TTCCHHHHHHHHH
T ss_pred CcHHHHHHHhcC------CCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHh--------cCCCHHHHHHHHH
Confidence 467777766643 244444555555555654422111111 1246777776641 1356899999999
Q ss_pred HHHHHHHHcCCCchhhHHHHHHHHHHHhcCCCCCchhHhHHHHHHHhhC
Q 016189 286 LIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALG 334 (393)
Q Consensus 286 lL~~I~~~~~~~y~~L~~Ri~~~l~k~l~d~~~~l~t~YGAi~GL~~lG 334 (393)
+|+.+|......-......++..|.+.+.+ .......-|+.+|..+.
T Consensus 226 ~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~aL~~l~ 272 (528)
T 4b8j_A 226 TLSNFCRGKPQPSFEQTRPALPALARLIHS--NDEEVLTDACWALSYLS 272 (528)
T ss_dssp HHHHHHCSSSCCCHHHHTTHHHHHHHHTTC--CCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCcHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHH
Confidence 999999764333333445577778887764 34566777888888775
No 96
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=75.65 E-value=4.4 Score=35.43 Aligned_cols=57 Identities=19% Similarity=0.158 Sum_probs=41.5
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCCCccCHhhHHHHhh
Q 016189 8 TIEVIAQSIGVYNLSSDVALALAPDVEYR---VREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (393)
Q Consensus 8 ~i~~iaes~G~~~ls~~~a~~La~dve~r---l~~iiq~a~k~~~hskR~~Lt~~Di~~Al~ 66 (393)
-++..++..|+ .+++++.+.|++...-. +.++++.+..++...+ +++|.+||..+++
T Consensus 182 ~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 182 ALQRRAAMRGL-QLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHHHHHTTC-CCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHhh
Confidence 34455666787 59999999999887644 4555666666665555 4699999999985
No 97
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=74.52 E-value=5.5 Score=33.97 Aligned_cols=55 Identities=16% Similarity=0.102 Sum_probs=43.4
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhh
Q 016189 9 IEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (393)
Q Consensus 9 i~~iaes~G~~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~ 66 (393)
++..++..|+ .+++++.+.|++...-.++++++...+.+..+ +++|.+||+.++.
T Consensus 170 l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 170 LLEICEKEGV-KITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp HHHHHHHHTC-CBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred HHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 3445556687 49999999999888777888877777777665 6999999999985
No 98
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=74.11 E-value=28 Score=38.30 Aligned_cols=155 Identities=8% Similarity=0.017 Sum_probs=94.8
Q ss_pred HHHHhhhhcCCcccchhhHHHHHHHHHhhccCChHHHHHHHHHHHHhhcCCCcccc-cchhhhHHHHHHHHhccccCCCC
Q 016189 194 QALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIE-PYLHQMMPSVITCLVSKRLGNRF 272 (393)
Q Consensus 194 ~aL~sL~tD~gL~~LlPy~~~fi~e~v~~nl~nl~~L~~ll~~v~ALl~N~~l~ie-~YlHqLlpslltcll~k~l~~~~ 272 (393)
.+|..+..-.+ ..+++.+..++.+.+...-.++......+.++.|+...-.-..+ +++.++++.+++. +...
T Consensus 435 ~~L~~l~~~~~-~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l------~~~~ 507 (1049)
T 3m1i_C 435 EVLVYLTHLNV-IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDL------TVKK 507 (1049)
T ss_dssp HHHHHHHHHCH-HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHH------TTSS
T ss_pred HHHHHHHccCH-HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHH------Hhhh
Confidence 34555543222 24566666666655543334677777778778888754221212 4566677666552 2111
Q ss_pred --CCcchHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHhcCCCCCchhHhHHHHHHHhhCHHhHHHhc-------c
Q 016189 273 --SDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLI-------L 343 (393)
Q Consensus 273 --~~~h~~LR~~AA~lL~~I~~~~~~~y~~L~~Ri~~~l~k~l~d~~~~l~t~YGAi~GL~~lG~~~vr~~i-------l 343 (393)
.++|-.+|..+..++++.++-+.. .+..-+.++..+.+.+.|+ +...+--|..+|..|..+.-..++ -
T Consensus 508 ~~~~~~~~v~~~~~~~lgry~~~~~~-~~~~l~~vl~~ll~~l~~~--~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~ 584 (1049)
T 3m1i_C 508 RGKDNKAVVASDIMYVVGQYPRFLKA-HWNFLRTVILKLFEFMHET--HEGVQDMACDTFIKIVQKCKYHFVIQQPRESE 584 (1049)
T ss_dssp CSHHHHHHHHHHHHHHHHHCHHHHHH-CHHHHHHHHHHHHHHTTSS--CHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSS
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHhhcccCCCCC
Confidence 235666676788888888754443 3566677888888887654 456666777788888766543332 2
Q ss_pred cchHHHHHhhhHhHh
Q 016189 344 PNLELYLKFLEPEML 358 (393)
Q Consensus 344 P~l~~~~~~l~~~l~ 358 (393)
|++..+...+...+.
T Consensus 585 p~~~~il~~l~~~~~ 599 (1049)
T 3m1i_C 585 PFIQTIIRDIQKTTA 599 (1049)
T ss_dssp CHHHHHHHTHHHHHT
T ss_pred cHHHHHHHHHHHHHH
Confidence 999999888876543
No 99
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=73.78 E-value=3.3 Score=30.91 Aligned_cols=42 Identities=19% Similarity=0.139 Sum_probs=35.3
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhh
Q 016189 26 ALALAPDVE----YRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (393)
Q Consensus 26 a~~La~dve----~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~ 67 (393)
...||+..+ --|..++++|...+.+..+..++.+|+..|++.
T Consensus 27 l~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~ 72 (78)
T 3kw6_A 27 LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 72 (78)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 455666555 348899999999999999999999999999975
No 100
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=73.58 E-value=34 Score=33.91 Aligned_cols=123 Identities=12% Similarity=0.083 Sum_probs=72.9
Q ss_pred HHHhhhhcC-C-----cccchhhHHHHHHHHHhhccCChHHHHHHHHHHHHhhcCCCcccccchh-hhHHHHHHHHhccc
Q 016189 195 ALLSLAMDS-G-----LHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLH-QMMPSVITCLVSKR 267 (393)
Q Consensus 195 aL~sL~tD~-g-----L~~LlPy~~~fi~e~v~~nl~nl~~L~~ll~~v~ALl~N~~l~ie~YlH-qLlpslltcll~k~ 267 (393)
+|..|..+. . ....+|.++..+. -.+.......+..+..|..++.-.++..+. .++|.++.++-
T Consensus 226 ~L~~L~~~~~~~~~~~~~~~l~~L~~lL~------~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~--- 296 (528)
T 4b8j_A 226 TLSNFCRGKPQPSFEQTRPALPALARLIH------SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL--- 296 (528)
T ss_dssp HHHHHHCSSSCCCHHHHTTHHHHHHHHTT------CCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTT---
T ss_pred HHHHHHcCCCCCcHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHc---
Confidence 456665552 1 2446666665542 135666677777777777765544333322 56777777752
Q ss_pred cCCCCCCcchHHHHHHHHHHHHHHHHcCCCc-hhhHHHHHHHHHHHhcCCCCCchhHhHHHHHHHhh
Q 016189 268 LGNRFSDNHWDLRNFVADLIASICTRFGHVY-QNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL 333 (393)
Q Consensus 268 l~~~~~~~h~~LR~~AA~lL~~I~~~~~~~y-~~L~~Ri~~~l~k~l~d~~~~l~t~YGAi~GL~~l 333 (393)
..++.+|..|+.+|+.|+....... .-+...++..|.+.|.++ .+.....-|+..|..+
T Consensus 297 ------~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~A~~~L~nl 356 (528)
T 4b8j_A 297 ------HPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQN-LKKSIKKEACWTISNI 356 (528)
T ss_dssp ------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSC-CCHHHHHHHHHHHHHH
T ss_pred ------CCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCC-CcHHHHHHHHHHHHHH
Confidence 2357999999999999986211000 011233456677776654 2456667777777777
No 101
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=72.25 E-value=21 Score=38.39 Aligned_cols=131 Identities=12% Similarity=0.101 Sum_probs=71.2
Q ss_pred HHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHH
Q 016189 233 LMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHA 312 (393)
Q Consensus 233 ll~~v~ALl~N~~l~ie~YlHqLlpslltcll~k~l~~~~~~~h~~LR~~AA~lL~~I~~~~~~~y~~L~~Ri~~~l~k~ 312 (393)
+-++.+-+-.|+ .|+..++|.++.++- . -.+|..|+..+..+|+.++.....--+.|+..|.+.
T Consensus 513 l~~~~~~l~~~~-----~~l~~vl~~l~~~l~-----~------~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~ 576 (963)
T 2x19_B 513 IGALSEWLADHP-----VMINSVLPLVLHALG-----N------PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDV 576 (963)
T ss_dssp HHHTHHHHHHCH-----HHHTTTHHHHHHHTT-----C------GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCH-----HHHHHHHHHHHHHhC-----C------chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344444444443 567777777776651 1 378999999999999987765444446677777777
Q ss_pred hcCCCCC---chhHhHHHHHHHh-hCHHhHHHhcccchHHHHHhhhHhHh----hh-hhhhhhHHHHHHHHHhHhhhhhh
Q 016189 313 FLDPTKS---LSQHYGAIQGLAA-LGPSVVHLLILPNLELYLKFLEPEML----LE-KQKNEMKRHEAWRVYGALQVDFF 383 (393)
Q Consensus 313 l~d~~~~---l~t~YGAi~GL~~-lG~~~vr~~ilP~l~~~~~~l~~~l~----~~-~~~~~~~~~~a~~v~~~l~~a~~ 383 (393)
+..+.-+ ....|.|+..+.. +|.+... |.+..++..+-..+. .. .......+..+..+.+.+..+++
T Consensus 577 l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~----~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~ 652 (963)
T 2x19_B 577 LMKQIHKTSQCMWLMQALGFLLSALQVEEIL----KNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLD 652 (963)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH----HHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hccCCCChHHHHHHHHHHHHHHhcCCHHHHH----HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 6643322 3344666666543 4533332 334443332222221 11 01111223455566667777665
No 102
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=71.80 E-value=46 Score=28.31 Aligned_cols=121 Identities=16% Similarity=0.113 Sum_probs=71.0
Q ss_pred HHHHHHhhcCCchHHHHHHHHhhhhcCCcccchhhHHHHHHHHHhhccCChHHHHHHHHHHHHhhcCCCcccccchhhhH
Q 016189 177 DKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMM 256 (393)
Q Consensus 177 ~~It~a~~~~~~~~~~~~aL~sL~tD~gL~~LlPy~~~fi~e~v~~nl~nl~~L~~ll~~v~ALl~N~~l~ie~YlHqLl 256 (393)
..+.+.+ ...+...|..|+..|..-.. ...+|.++..+.+ .+...-...+ ++|-.-.. ...+
T Consensus 22 ~~L~~~L-~~~~~~vR~~A~~~L~~~~~-~~~~~~L~~~l~~------~~~~vr~~a~---~aL~~~~~-------~~~~ 83 (211)
T 3ltm_A 22 EMYIKNL-QDDSYYVRRAAAYALGKIGD-ERAVEPLIKALKD------EDAWVRRAAA---DALGQIGD-------ERAV 83 (211)
T ss_dssp HHHHHHT-TCSSHHHHHHHHHHHHHHCC-GGGHHHHHHHTTC------SCHHHHHHHH---HHHHHHCC-------GGGH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHcC------CCHHHHHHHH---HHHHhhCC-------HHHH
Confidence 3444443 34556667777766665332 4566666654432 1333222222 33322111 2456
Q ss_pred HHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHhcCCCCCchhHhHHHHHHHhhCHH
Q 016189 257 PSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPS 336 (393)
Q Consensus 257 pslltcll~k~l~~~~~~~h~~LR~~AA~lL~~I~~~~~~~y~~L~~Ri~~~l~k~l~d~~~~l~t~YGAi~GL~~lG~~ 336 (393)
|.++.++ .+.++.+|..|+..|+.+.. + .....|.+.+.| .+......|+.+|..+|..
T Consensus 84 ~~L~~~l---------~~~~~~vr~~a~~aL~~~~~------~----~~~~~L~~~l~d--~~~~vr~~a~~aL~~~~~~ 142 (211)
T 3ltm_A 84 EPLIKAL---------KDEDGWVRQSAAVALGQIGD------E----RAVEPLIKALKD--EDWFVRIAAAFALGEIGDE 142 (211)
T ss_dssp HHHHHHT---------TCSSHHHHHHHHHHHHHHCC------G----GGHHHHHHHTTC--SSHHHHHHHHHHHHHHCCG
T ss_pred HHHHHHH---------cCCCHHHHHHHHHHHHHhCc------H----HHHHHHHHHHhC--CCHHHHHHHHHHHHHcCCH
Confidence 6666664 24568899999999998743 2 244556666644 5667889999999999874
No 103
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=70.95 E-value=47 Score=28.02 Aligned_cols=115 Identities=17% Similarity=0.151 Sum_probs=68.5
Q ss_pred hcCCchHHHHHHHHhhhhcCCcccchhhHHHHHHHHHhhccCChHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHH
Q 016189 184 VSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCL 263 (393)
Q Consensus 184 ~~~~~~~~~~~aL~sL~tD~gL~~LlPy~~~fi~e~v~~nl~nl~~L~~ll~~v~ALl~N~~l~ie~YlHqLlpslltcl 263 (393)
+...+...|..|+..|..-.. ...+|.++..+.+ .+...-.. .+++|-.-.. ...+|.++.++
T Consensus 23 L~~~~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~~------~~~~vr~~---a~~~L~~~~~-------~~~~~~L~~~l 85 (201)
T 3ltj_A 23 LQDDSYYVRRAAAYALGKIGD-ERAVEPLIKALKD------EDAWVRRA---AADALGQIGD-------ERAVEPLIKAL 85 (201)
T ss_dssp TTCSCHHHHHHHHHHHHHHCC-GGGHHHHHHHTTC------SSHHHHHH---HHHHHHHHCC-------GGGHHHHHHHT
T ss_pred hcCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHcC------CCHHHHHH---HHHHHHhhCC-------HHHHHHHHHHH
Confidence 344566677777777665332 3556666655431 13322222 2233322111 24566666653
Q ss_pred hccccCCCCCCcchHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHhcCCCCCchhHhHHHHHHHhhCHH
Q 016189 264 VSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPS 336 (393)
Q Consensus 264 l~k~l~~~~~~~h~~LR~~AA~lL~~I~~~~~~~y~~L~~Ri~~~l~k~l~d~~~~l~t~YGAi~GL~~lG~~ 336 (393)
.+.++.+|..|+..|+.+.. + .....|.+.+.| .+...+..|+.+|..+|..
T Consensus 86 ---------~d~~~~vr~~a~~aL~~~~~------~----~~~~~L~~~l~d--~~~~vr~~a~~aL~~~~~~ 137 (201)
T 3ltj_A 86 ---------KDEDGWVRQSAAVALGQIGD------E----RAVEPLIKALKD--EDWFVRIAAAFALGEIGDE 137 (201)
T ss_dssp ---------TCSSHHHHHHHHHHHHHHCC------G----GGHHHHHHHTTC--SSHHHHHHHHHHHHHHTCG
T ss_pred ---------cCCCHHHHHHHHHHHHHhCc------H----HHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCH
Confidence 24578999999999988743 2 344556666654 4677889999999999864
No 104
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=70.13 E-value=4.4 Score=30.63 Aligned_cols=33 Identities=27% Similarity=0.279 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHhCCCccCHhhHHHHhhhc
Q 016189 36 RVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (393)
Q Consensus 36 rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~~ 68 (393)
-|..++++|...+.+.++..+|.+|+..|++..
T Consensus 36 Di~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 36 VIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQ 68 (82)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 477899999999999899999999999999764
No 105
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=69.59 E-value=11 Score=41.99 Aligned_cols=64 Identities=19% Similarity=0.325 Sum_probs=56.5
Q ss_pred CChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhh
Q 016189 4 VPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (393)
Q Consensus 4 ~~~~~i~~iaes~G~~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~ 67 (393)
+|..-|.+..+..-..+++..|+-.||.-+||-..+|++-|...++..|++++++.|+..|++.
T Consensus 105 ~pv~~~~~~l~~~~~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~ 168 (1049)
T 3ksy_A 105 LPVEKIHPLLKEVLGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCA 168 (1049)
T ss_dssp SCHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHH
T ss_pred ccHHHHHHHhhcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccC
Confidence 5666677766554556999999999999999999999999999999999999999999999855
No 106
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=66.65 E-value=15 Score=34.78 Aligned_cols=63 Identities=11% Similarity=0.131 Sum_probs=49.1
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhhcCCC
Q 016189 8 TIEVIAQSIGVYNLSSDVALALAPDVE---YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVE 71 (393)
Q Consensus 8 ~i~~iaes~G~~~ls~~~a~~La~dve---~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~~nie 71 (393)
-++..++..|+ .++++++..||...+ -.+..+++.+..++.-.++.++|.+++..|++..+++
T Consensus 188 iL~~~~~~~~~-~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~~~ 253 (334)
T 1in4_A 188 IIKRAASLMDV-EIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNID 253 (334)
T ss_dssp HHHHHHHHTTC-CBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHcCC-CcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCCC
Confidence 35566777888 499999999987542 2355677888888887788899999999999987654
No 107
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=64.65 E-value=7.5 Score=29.88 Aligned_cols=44 Identities=20% Similarity=0.067 Sum_probs=36.3
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhhcC
Q 016189 26 ALALAPDVE----YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRN 69 (393)
Q Consensus 26 a~~La~dve----~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~~n 69 (393)
...||+..+ --|..++++|...+.+..+..++.+|+..|++...
T Consensus 25 l~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~ 72 (88)
T 3vlf_B 25 WELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVI 72 (88)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHh
Confidence 455666555 35899999999999999999999999999998653
No 108
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=63.82 E-value=11 Score=32.37 Aligned_cols=55 Identities=15% Similarity=0.145 Sum_probs=39.6
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhh
Q 016189 10 EVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (393)
Q Consensus 10 ~~iaes~G~~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~ 66 (393)
+..++..|+ .+++++++.|++...-..+.+.+.+.+.+..++ +++|.+||+.++.
T Consensus 195 ~~~~~~~~~-~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~~~-~~i~~~~v~~~~~ 249 (250)
T 1njg_A 195 EHILNEEHI-AHEPRALQLLARAAEGSLRDALSLTDQAIASGD-GQVSTQAVSAMLG 249 (250)
T ss_dssp HHHHHHTTC-CBCHHHHHHHHHHHTTCHHHHHHHHHHHHTTTT-SSBCHHHHHHHSC
T ss_pred HHHHHhcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccC-ceecHHHHHHHhC
Confidence 334455676 589999999998887666666665555555444 5899999999874
No 109
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=63.73 E-value=7 Score=30.05 Aligned_cols=34 Identities=21% Similarity=0.171 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhhc
Q 016189 35 YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (393)
Q Consensus 35 ~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~~ 68 (393)
--|..++++|...+.+..+..++.+|+..|++..
T Consensus 48 ADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v 81 (86)
T 2krk_A 48 AEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 81 (86)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4588899999999988888999999999999753
No 110
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=62.13 E-value=17 Score=30.91 Aligned_cols=107 Identities=12% Similarity=0.086 Sum_probs=64.8
Q ss_pred cchhhHHHHHHHHHhhccCChHHHHHHHHHHHHhhcCCCcccccc-hhhhHHHHHHHHhccccCCCCCCcchHHHHHHHH
Q 016189 207 PLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPY-LHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVAD 285 (393)
Q Consensus 207 ~LlPy~~~fi~e~v~~nl~nl~~L~~ll~~v~ALl~N~~l~ie~Y-lHqLlpslltcll~k~l~~~~~~~h~~LR~~AA~ 285 (393)
..+|.++.++.+ .+..........+..|..+..-..+.. -+..+|.++.++-. .+..+|..|+.
T Consensus 96 g~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~---------~~~~v~~~a~~ 160 (210)
T 4db6_A 96 GALPALVQLLSS------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS---------PNEQILQEALW 160 (210)
T ss_dssp TCHHHHHHHTTC------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC---------SCHHHHHHHHH
T ss_pred CCHHHHHHHHcC------CcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcC---------CCHHHHHHHHH
Confidence 367777766532 244555566666667765433222222 23578888777522 35689999999
Q ss_pred HHHHHHHHcCCCchhhHH-----HHHHHHHHHhcCCCCCchhHhHHHHHHHhhC
Q 016189 286 LIASICTRFGHVYQNLQS-----RVTRTLLHAFLDPTKSLSQHYGAIQGLAALG 334 (393)
Q Consensus 286 lL~~I~~~~~~~y~~L~~-----Ri~~~l~k~l~d~~~~l~t~YGAi~GL~~lG 334 (393)
.|..+|... +..+. ..+..|.+.+.+ .+...+.-|...|..|.
T Consensus 161 aL~~l~~~~----~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 161 ALSNIASGG----NEQKQAVKEAGALEKLEQLQSH--ENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHTSC----HHHHHHHHHTTHHHHHHHGGGC--SCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCC----cHHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHh
Confidence 999999631 22232 245567776653 45566777777777664
No 111
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=62.11 E-value=65 Score=33.17 Aligned_cols=71 Identities=11% Similarity=0.023 Sum_probs=53.2
Q ss_pred chhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHhcCCCCCchhHhHHHHHH
Q 016189 251 YLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGL 330 (393)
Q Consensus 251 YlHqLlpslltcll~k~l~~~~~~~h~~LR~~AA~lL~~I~~~~~~~y~~L~~Ri~~~l~k~l~d~~~~l~t~YGAi~GL 330 (393)
.+..++|.+..|+-. .+..+|..|+..+..+++.+ |.+-.++...+.+.+.| +.....++|+..|
T Consensus 139 ~~~~l~~~l~~~L~~---------~~~~VRk~A~~al~~l~~~~----p~~v~~~~~~l~~lL~D--~d~~V~~~Al~~L 203 (618)
T 1w63_A 139 MCRDLAGEVEKLLKT---------SNSYLRKKAALCAVHVIRKV----PELMEMFLPATKNLLNE--KNHGVLHTSVVLL 203 (618)
T ss_dssp HHHHHHHHHHHHHHS---------CCHHHHHHHHHHHHHHHHHC----GGGGGGGGGGTTTSTTC--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC---------CCHHHHHHHHHHHHHHHHHC----hHHHHHHHHHHHHHhCC--CCHhHHHHHHHHH
Confidence 355678888888733 45699999999999999975 44444566666666554 6688899999999
Q ss_pred HhhCHH
Q 016189 331 AALGPS 336 (393)
Q Consensus 331 ~~lG~~ 336 (393)
..++..
T Consensus 204 ~~i~~~ 209 (618)
T 1w63_A 204 TEMCER 209 (618)
T ss_dssp HHHCCS
T ss_pred HHHHHh
Confidence 999853
No 112
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=59.42 E-value=41 Score=37.09 Aligned_cols=96 Identities=13% Similarity=0.027 Sum_probs=57.3
Q ss_pred cchhhHHHHHHHHHhhccC---Ch----HHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHH
Q 016189 207 PLVPYFTYFISEEVTRSLK---NF----SLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDL 279 (393)
Q Consensus 207 ~LlPy~~~fi~e~v~~nl~---nl----~~L~~ll~~v~ALl~N~~l~ie~YlHqLlpslltcll~k~l~~~~~~~h~~L 279 (393)
.-+|.++.++..-+..++. +. ..+..+-|...=+-.+| +.+|++|..+++.+.- .+.+-.+
T Consensus 486 ~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~---------~~l~~~L~~ll~~~gl---~~~~~~V 553 (980)
T 3ibv_A 486 KSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYES---------AAIPALIEYFVGPRGI---HNTNERV 553 (980)
T ss_dssp CCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCC---------TTHHHHHHHHTSTTTT---TCCCTTT
T ss_pred chhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCc---------hhHHHHHHHHhccccc---cCCChhH
Confidence 4566666666555443332 11 11223334444444433 5677888887763221 1233478
Q ss_pred HHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHhc
Q 016189 280 RNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFL 314 (393)
Q Consensus 280 R~~AA~lL~~I~~~~~~~y~~L~~Ri~~~l~k~l~ 314 (393)
|..|+.++.++|+.+...-..--..|+..+...|.
T Consensus 554 ~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~ 588 (980)
T 3ibv_A 554 RPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLN 588 (980)
T ss_dssp HHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGC
T ss_pred HHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhc
Confidence 99999999999999987654455567777776654
No 113
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=59.32 E-value=5.6 Score=29.93 Aligned_cols=34 Identities=21% Similarity=0.202 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhhc
Q 016189 35 YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (393)
Q Consensus 35 ~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~~ 68 (393)
--|..++++|...+.+..+..+|.+|+..|++..
T Consensus 38 ADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~ 71 (83)
T 3aji_B 38 ADINSICQESGMLAVRENRYIVLAKDFEKAYKTV 71 (83)
T ss_dssp HHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 4578899999999998888999999999999764
No 114
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=59.17 E-value=15 Score=29.46 Aligned_cols=51 Identities=24% Similarity=0.376 Sum_probs=39.1
Q ss_pred CcchHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHhcCCCCCchhHhHHHHHHHhhCHH
Q 016189 274 DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPS 336 (393)
Q Consensus 274 ~~h~~LR~~AA~lL~~I~~~~~~~y~~L~~Ri~~~l~k~l~d~~~~l~t~YGAi~GL~~lG~~ 336 (393)
+.+|.+|..|+..|+.+.. ++....|.+.+.| .+...+..|+.+|..+|..
T Consensus 53 d~~~~vR~~A~~aL~~~~~----------~~a~~~L~~~L~d--~~~~VR~~A~~aL~~~~~~ 103 (131)
T 1te4_A 53 NEDWRIRGAAAWIIGNFQD----------ERAVEPLIKLLED--DSGFVRSGAARSLEQIGGE 103 (131)
T ss_dssp CSCHHHHHHHHHHHGGGCS----------HHHHHHHHHHHHH--CCTHHHHHHHHHHHHHCSH
T ss_pred CCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCcH
Confidence 4679999999999988753 3456666676654 4567899999999999853
No 115
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=58.40 E-value=14 Score=28.81 Aligned_cols=62 Identities=11% Similarity=0.233 Sum_probs=45.3
Q ss_pred CCChHHHHHHHHHcCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------CccCHhhHHHHh
Q 016189 3 IVPKETIEVIAQSIGV----YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHR-------TVLTANDVDSAL 65 (393)
Q Consensus 3 ~~~~~~i~~iaes~G~----~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR-------~~Lt~~Di~~Al 65 (393)
.+|+++|-+|.. ... ++++.++...+++.++-++||.+-.|..-.+..+- ..|+.+|.+...
T Consensus 1 ~ip~~llaRIL~-~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~~~~~~~~~~d~~LeveDLEkia 73 (88)
T 3v9r_B 1 MLSKEALIKILS-QNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKDINGERGDKSPLELSHQDLERIV 73 (88)
T ss_dssp CCCSHHHHHHHT-TTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCeeehHHHHHHH
Confidence 378899988877 444 37999999999999999999999888644443222 478888887643
No 116
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=55.51 E-value=35 Score=31.91 Aligned_cols=65 Identities=15% Similarity=0.035 Sum_probs=49.8
Q ss_pred CChHHHHHHHHHc-----CCCCCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhhc
Q 016189 4 VPKETIEVIAQSI-----GVYNLSSDVALALAPDVE------YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (393)
Q Consensus 4 ~~~~~i~~iaes~-----G~~~ls~~~a~~La~dve------~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~~ 68 (393)
++.+.+..+.+.. +-..+++++.+.+++.+. .++.++++.|..++...++.+++.+||..|+...
T Consensus 201 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 201 YTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp CCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 3455555544432 234689999999999887 5677889999988888888999999999999765
No 117
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=54.61 E-value=35 Score=33.88 Aligned_cols=58 Identities=16% Similarity=0.146 Sum_probs=44.6
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHhCCCccCHhhHHHHhhhc
Q 016189 10 EVIAQSIGVYNLSSDVALALAPDV-EY---RVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (393)
Q Consensus 10 ~~iaes~G~~~ls~~~a~~La~dv-e~---rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~~ 68 (393)
+..++..|+ .++++++..++... +- +...+++.|.-++...+|.++|.+||..|+...
T Consensus 376 ~~~~~~~~~-~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 376 KIRAQTEGI-NISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELF 437 (456)
T ss_dssp HHHHHHHTC-CBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred HHHHHHhCC-CCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHh
Confidence 334455677 49999999888866 32 356677778788888899999999999999774
No 118
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=54.51 E-value=74 Score=32.60 Aligned_cols=131 Identities=7% Similarity=0.021 Sum_probs=75.8
Q ss_pred CchHHHHH---HHHhhhhcCCc-------ccchhhHHHHHHHHHhhccCChHHHHHHHHHHHHhhcCCCcccccchhhhH
Q 016189 187 SNSTVFKQ---ALLSLAMDSGL-------HPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMM 256 (393)
Q Consensus 187 ~~~~~~~~---aL~sL~tD~gL-------~~LlPy~~~fi~e~v~~nl~nl~~L~~ll~~v~ALl~N~~l~ie~YlHqLl 256 (393)
++...+.. +|..|..+..- ...+|.++..+.+. .+........+.+..|..++......+-...+
T Consensus 26 ~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~-----~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i 100 (644)
T 2z6h_A 26 EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT-----NDVETARCTAGTLHNLSHHREGLLAIFKSGGI 100 (644)
T ss_dssp SCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSC-----CCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHH
T ss_pred CCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcC-----CCHHHHHHHHHHHHHHhcChhhHHHHHHcCCH
Confidence 34444443 45666666541 24566666666421 24555556666677777776533333334578
Q ss_pred HHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHcCCCchhh-HHHHHHHHHHHhcCCCCCchhHhHHHHHHHhh
Q 016189 257 PSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNL-QSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL 333 (393)
Q Consensus 257 pslltcll~k~l~~~~~~~h~~LR~~AA~lL~~I~~~~~~~y~~L-~~Ri~~~l~k~l~d~~~~l~t~YGAi~GL~~l 333 (393)
|.++.++-+ .+..+|..|+..|..++......-..+ +..++..|.+.|.+++ .....-++.+|..+
T Consensus 101 ~~Lv~lL~~---------~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~--~~~~~~a~~~L~~L 167 (644)
T 2z6h_A 101 PALVKMLGS---------PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN--VKFLAITTDCLQIL 167 (644)
T ss_dssp HHHHHHTTC---------SSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCC--HHHHHHHHHHHHHH
T ss_pred HHHHHHHhC---------CCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCC--HHHHHHHHHHHHHH
Confidence 887777521 246899999999999998753322222 3456678888876542 33333333344443
No 119
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=52.24 E-value=47 Score=30.82 Aligned_cols=51 Identities=10% Similarity=0.028 Sum_probs=42.5
Q ss_pred CCCCCCHHHHHHHHHHHHH------H-HHHHHHHHHHHHHHhCCCccCHhhHHHHhhhc
Q 016189 17 GVYNLSSDVALALAPDVEY------R-VREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (393)
Q Consensus 17 G~~~ls~~~a~~La~dve~------r-l~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~~ 68 (393)
++ .+++++.+.|++...- | +..+++.|..++.-.+|.+++.+||..|+...
T Consensus 265 ~~-~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~ 322 (350)
T 1g8p_A 265 KV-EAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMA 322 (350)
T ss_dssp GC-BCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHH
Confidence 45 6999999999988765 3 66778888888888899999999999998763
No 120
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=50.09 E-value=1.4e+02 Score=26.49 Aligned_cols=57 Identities=12% Similarity=0.130 Sum_probs=37.6
Q ss_pred CcchHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHhcCCCCCchhHhHHHHHHHhhCHH
Q 016189 274 DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPS 336 (393)
Q Consensus 274 ~~h~~LR~~AA~lL~~I~~~~~~~y~~L~~Ri~~~l~k~l~d~~~~l~t~YGAi~GL~~lG~~ 336 (393)
+.++.+|..|+..|+.++.... ...+.+...|.+.+.| .+...++.|+.+|..+|..
T Consensus 102 d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d--~~~~vR~~a~~aL~~~~~~ 158 (280)
T 1oyz_A 102 DKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFD--KSTNVRRATAFAISVINDK 158 (280)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTC--SCHHHHHHHHHHHHTC---
T ss_pred CCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhC--CCHHHHHHHHHHHHhcCCH
Confidence 3567888888888888875432 2345666777777665 3466778888888888764
No 121
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=48.62 E-value=11 Score=35.23 Aligned_cols=56 Identities=13% Similarity=0.067 Sum_probs=38.3
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CccCHhhHHHHhh
Q 016189 10 EVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHR----TVLTANDVDSALN 66 (393)
Q Consensus 10 ~~iaes~G~~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR----~~Lt~~Di~~Al~ 66 (393)
+.+++.-|+ .+++++.+.|++...-.+|++++..-+....++| ..+|.+||..++.
T Consensus 202 ~~~~~~~~~-~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 202 RFISEQENV-KCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHHHTTTC-CCCHHHHHHHHHHTSSCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHHHHHhCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 334445677 5999999999988765566655554444433333 2899999998875
No 122
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=48.09 E-value=35 Score=35.25 Aligned_cols=50 Identities=10% Similarity=0.174 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhh
Q 016189 18 VYNLSSDVALALAPDVE-------------YRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (393)
Q Consensus 18 ~~~ls~~~a~~La~dve-------------~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~ 67 (393)
...+++++...|.+.-. -.+..+++.|..+++..+|..++.+||..|++.
T Consensus 312 ~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 312 IPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp SCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 45799999999988652 347789999999999999999999999999953
No 123
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=47.80 E-value=1.4e+02 Score=33.12 Aligned_cols=90 Identities=13% Similarity=0.149 Sum_probs=54.0
Q ss_pred HHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHcCCCchh--------hHHH
Q 016189 233 LMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQN--------LQSR 304 (393)
Q Consensus 233 ll~~v~ALl~N~~l~ie~YlHqLlpslltcll~k~l~~~~~~~h~~LR~~AA~lL~~I~~~~~~~y~~--------L~~R 304 (393)
+-|..+=+-.|| +++|++++.++..- .++|-.+.+.|+..+..||.+++....+ --+-
T Consensus 524 lGry~~wl~~~~---------~~L~~vl~~L~~~l-----~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~ 589 (1023)
T 4hat_C 524 VGQYPRFLKAHW---------NFLRTVILKLFEFM-----HETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQT 589 (1023)
T ss_dssp HHTCHHHHHHCH---------HHHHHHHHHHHHHT-----TCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHH
T ss_pred HHHHHHHHhccH---------HHHHHHHHHHHHHh-----hcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHH
Confidence 445555554443 34666666655532 2345689999999999999998753321 2345
Q ss_pred HHHHHHHHhcC-CCCCchhHhHHHHHHHh-hCHH
Q 016189 305 VTRTLLHAFLD-PTKSLSQHYGAIQGLAA-LGPS 336 (393)
Q Consensus 305 i~~~l~k~l~d-~~~~l~t~YGAi~GL~~-lG~~ 336 (393)
|.+.+.+++-+ +.+...+.|.|+..+.. +|++
T Consensus 590 il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~ 623 (1023)
T 4hat_C 590 IIRDIQKTTADLQPQQVHTFYKACGIIISEERSV 623 (1023)
T ss_dssp HHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCH
Confidence 66777776532 22345567777766543 4543
No 124
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=47.71 E-value=11 Score=33.78 Aligned_cols=60 Identities=18% Similarity=0.091 Sum_probs=37.6
Q ss_pred HHHHHHHHcCCCCCCHH-HHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhhc
Q 016189 8 TIEVIAQSIGVYNLSSD-VALALAPDVE----YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (393)
Q Consensus 8 ~i~~iaes~G~~~ls~~-~a~~La~dve----~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~~ 68 (393)
-++..++..|.. .+++ ....|+.... -.|+.++++|...+...++..++.+|+..|++..
T Consensus 185 il~~~~~~~~~~-~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~ 249 (262)
T 2qz4_A 185 IFEQHLKSLKLT-QSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNFEYAVERV 249 (262)
T ss_dssp HHHHHHHHTTCC-BTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCBCCHHHHHHHH
T ss_pred HHHHHHHhCCCC-cchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 345567778875 4444 3466776543 3688999999999988888999999999999753
No 125
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=46.94 E-value=88 Score=28.97 Aligned_cols=65 Identities=15% Similarity=0.025 Sum_probs=47.7
Q ss_pred CChHHHHHHHHH-----cCCCCCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhhc
Q 016189 4 VPKETIEVIAQS-----IGVYNLSSDVALALAPDVE------YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (393)
Q Consensus 4 ~~~~~i~~iaes-----~G~~~ls~~~a~~La~dve------~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~~ 68 (393)
++.+.+..+.+. .+-..+++++.+.+++... ..+.++++.|...+...++.++|.+||..|+...
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 197 YNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEI 272 (386)
T ss_dssp CCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 344545554432 2234689999999998876 2366788888888887788899999999998765
No 126
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=46.60 E-value=16 Score=33.29 Aligned_cols=43 Identities=21% Similarity=0.122 Sum_probs=35.1
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhhc
Q 016189 26 ALALAPDVE----YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (393)
Q Consensus 26 a~~La~dve----~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~~ 68 (393)
...++...+ ..++.++++|...+...++..++.+|+..|++..
T Consensus 212 ~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 212 LEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKI 258 (285)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHH
Confidence 445555443 3689999999999999999999999999999764
No 127
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=46.39 E-value=27 Score=37.31 Aligned_cols=94 Identities=12% Similarity=0.117 Sum_probs=57.4
Q ss_pred ChHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHcCCCchhhHH--
Q 016189 226 NFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQS-- 303 (393)
Q Consensus 226 nl~~L~~ll~~v~ALl~N~~l~ie~YlHqLlpslltcll~k~l~~~~~~~h~~LR~~AA~lL~~I~~~~~~~y~~L~~-- 303 (393)
+.......+..+..|..+..-. .-...++|.++..+ ...+|.+|..|+.+|+.|+... +..+.
T Consensus 373 ~~~~~~~a~~~L~~L~~~~~~~--~~~~~~i~~Lv~lL---------~~~d~~vr~~A~~aL~~L~~~~----~~~~~~i 437 (780)
T 2z6g_A 373 SQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLL---------GSDDINVVTCAAGILSNLTCNN----YKNKMMV 437 (780)
T ss_dssp CHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHT---------TCSCHHHHHHHHHHHHHHTSSC----HHHHHHH
T ss_pred chHHHHHHHHHHHHHhccchhh--hhhhhHHHHHHHHH---------cCCCHHHHHHHHHHHHHHHhCC----HHHHHHH
Confidence 3445555666666676655322 12356788777764 1357899999999999997531 11121
Q ss_pred ---HHHHHHHHHhcCCCCCchhHhHHHHHHHhhC
Q 016189 304 ---RVTRTLLHAFLDPTKSLSQHYGAIQGLAALG 334 (393)
Q Consensus 304 ---Ri~~~l~k~l~d~~~~l~t~YGAi~GL~~lG 334 (393)
..+..|.+.+.++..+-....-|+.+|..|.
T Consensus 438 ~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~ 471 (780)
T 2z6g_A 438 CQVGGIEALVRTVLRAGDREDITEPAICALRHLT 471 (780)
T ss_dssp HTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 2344555655543333467788888888775
No 128
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=46.09 E-value=1.2e+02 Score=29.46 Aligned_cols=131 Identities=7% Similarity=0.019 Sum_probs=72.9
Q ss_pred CCchHHHHHH---HHhhhhcCCc-------ccchhhHHHHHHHHHhhccCChHHHHHHHHHHHHhhcCCCcccccchhhh
Q 016189 186 RSNSTVFKQA---LLSLAMDSGL-------HPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQM 255 (393)
Q Consensus 186 ~~~~~~~~~a---L~sL~tD~gL-------~~LlPy~~~fi~e~v~~nl~nl~~L~~ll~~v~ALl~N~~l~ie~YlHqL 255 (393)
.++...+..| |..|..+..- ...+|.+++.+... .+........+.+..|..++...-...-...
T Consensus 28 ~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~-----~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~ 102 (529)
T 1jdh_A 28 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT-----NDVETARCTAGTLHNLSHHREGLLAIFKSGG 102 (529)
T ss_dssp CSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHTTSHHHHHHHHHTTH
T ss_pred CCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHcCchhHHHHHHcCC
Confidence 3445555544 4445444321 24567777666432 2555556666677777666542222222357
Q ss_pred HHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHcCCCchhh-HHHHHHHHHHHhcCCCCCchhHhHHHHHHHh
Q 016189 256 MPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNL-QSRVTRTLLHAFLDPTKSLSQHYGAIQGLAA 332 (393)
Q Consensus 256 lpslltcll~k~l~~~~~~~h~~LR~~AA~lL~~I~~~~~~~y~~L-~~Ri~~~l~k~l~d~~~~l~t~YGAi~GL~~ 332 (393)
+|.++.++-. ++..+|..|+..|..+|......-..+ +...+..|.+.+.++ +.....-+..+|..
T Consensus 103 i~~L~~lL~~---------~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~--~~~~~~~~~~~L~~ 169 (529)
T 1jdh_A 103 IPALVKMLGS---------PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT--NVKFLAITTDCLQI 169 (529)
T ss_dssp HHHHHHHTTC---------SCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC---------CCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC--CHHHHHHHHHHHHH
Confidence 8877777421 236899999999999998644321222 345667788877653 33334444334433
No 129
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=46.04 E-value=81 Score=33.50 Aligned_cols=116 Identities=7% Similarity=0.023 Sum_probs=65.8
Q ss_pred CCchHHHHHH---HHhhhhcCC-------cccchhhHHHHHHHHHhhccCChHHHHHHHHHHHHhhcCCCcccccchhhh
Q 016189 186 RSNSTVFKQA---LLSLAMDSG-------LHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQM 255 (393)
Q Consensus 186 ~~~~~~~~~a---L~sL~tD~g-------L~~LlPy~~~fi~e~v~~nl~nl~~L~~ll~~v~ALl~N~~l~ie~YlHqL 255 (393)
.++...++.| |..|..+.. ....+|.+++.+... .+........+.+..|..++.-.-.-.-...
T Consensus 161 ~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~-----~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~ 235 (780)
T 2z6g_A 161 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT-----NDVETARCTSGTLHNLSHHREGLLAIFKSGG 235 (780)
T ss_dssp CSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHTSHHHHHHHHHTTH
T ss_pred CCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCC-----CCHHHHHHHHHHHHHHhCCchhHHHHHHcCC
Confidence 3455556654 444544321 224677777666432 2455555566666666665432111112246
Q ss_pred HHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHcCCCchhh-HHHHHHHHHHHhcC
Q 016189 256 MPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNL-QSRVTRTLLHAFLD 315 (393)
Q Consensus 256 lpslltcll~k~l~~~~~~~h~~LR~~AA~lL~~I~~~~~~~y~~L-~~Ri~~~l~k~l~d 315 (393)
+|.++.++-. .+-.+|..|+..|..||..+...-..+ ...++..|.+.+.+
T Consensus 236 I~~Lv~lL~~---------~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~ 287 (780)
T 2z6g_A 236 IPALVNMLGS---------PVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK 287 (780)
T ss_dssp HHHHHHHTTC---------SCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC
T ss_pred HHHHHHHHcC---------CCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhc
Confidence 7777776521 246899999999999998754322222 23456678887765
No 130
>3ip4_C Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: a.137.12.1 PDB: 2df4_C 2dqn_C* 2g5h_C 2g5i_C* 2f2a_C
Probab=45.16 E-value=43 Score=26.45 Aligned_cols=37 Identities=24% Similarity=0.314 Sum_probs=29.4
Q ss_pred CCCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Q 016189 1 MSIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVR 38 (393)
Q Consensus 1 ms~~~~~~i~~iaes~G~~~ls~~~a~~La~dve~rl~ 38 (393)
|+.++++.|+.+|+-.-+ .++++-...++.+++..+.
T Consensus 1 Mm~i~~e~v~~iA~LArL-~l~eeE~~~~~~~l~~Il~ 37 (100)
T 3ip4_C 1 MTKVTREEVEHIANLARL-QISPEETEEMANTLESILD 37 (100)
T ss_dssp --CCCHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHHHH
Confidence 666999999999999999 5999888888877665443
No 131
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=44.84 E-value=1.9e+02 Score=26.63 Aligned_cols=133 Identities=17% Similarity=0.185 Sum_probs=86.0
Q ss_pred HHHHHHHHHHH-HhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHcCCCchhhHHHHH
Q 016189 228 SLLFALMRVAR-SLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVT 306 (393)
Q Consensus 228 ~~L~~ll~~v~-ALl~N~~l~ie~YlHqLlpslltcll~k~l~~~~~~~h~~LR~~AA~lL~~I~~~~~~~y~~L~~Ri~ 306 (393)
.++..+-++-+ ++-.||. ++.+++|.++... + +..-.+|.+-+.++...|++ .+.+.++++
T Consensus 31 ~kl~~L~qa~el~~~~dp~-----ll~~~l~~il~~~-~--------~~~~~vrk~~~~Fi~e~~~~----k~~l~~~~l 92 (257)
T 3gs3_A 31 TKCELLAKVQETVLGSCAE-----LAEEFLESVLSLA-H--------DSNMEVRKQVVAFVEQVCKV----KVELLPHVI 92 (257)
T ss_dssp HHHHHHHHHHHHHTTTTGG-----GHHHHHHHHHGGG-G--------CSCHHHHHHHHHHHHHHHHH----CGGGHHHHH
T ss_pred HHHHHHHHHHHHHHccCHh-----HHHHHHHHHHHhc-c--------CChHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 55555555555 3333443 4445555555432 1 13468999999999999976 478999999
Q ss_pred HHHHHHhcCCCCCchhHhHHHHHHHhhCHHhHHHhcc-cc----hHHHHHhhh---HhHhh-hhhhhhhHHHHHHHHHhH
Q 016189 307 RTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLIL-PN----LELYLKFLE---PEMLL-EKQKNEMKRHEAWRVYGA 377 (393)
Q Consensus 307 ~~l~k~l~d~~~~l~t~YGAi~GL~~lG~~~vr~~il-P~----l~~~~~~l~---~~l~~-~~~~~~~~~~~a~~v~~~ 377 (393)
.+|...+-| .+....=.+|.+...+=+.+.+-+.- |. ....|+.+- ..+.. -...|...|..|.+....
T Consensus 93 ~~L~~Ll~d--~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~ 170 (257)
T 3gs3_A 93 NVVSMLLRD--NSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEG 170 (257)
T ss_dssp HHHHHHTTC--SCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHH
Confidence 999987764 45666668888888888888776653 33 345665442 11111 113456678888888877
Q ss_pred hhh
Q 016189 378 LQV 380 (393)
Q Consensus 378 l~~ 380 (393)
++-
T Consensus 171 vIl 173 (257)
T 3gs3_A 171 VVV 173 (257)
T ss_dssp HHH
T ss_pred HHH
Confidence 663
No 132
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=44.08 E-value=50 Score=32.22 Aligned_cols=94 Identities=12% Similarity=0.104 Sum_probs=57.6
Q ss_pred ChHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHcCCCchhhHH--
Q 016189 226 NFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQS-- 303 (393)
Q Consensus 226 nl~~L~~ll~~v~ALl~N~~l~ie~YlHqLlpslltcll~k~l~~~~~~~h~~LR~~AA~lL~~I~~~~~~~y~~L~~-- 303 (393)
+.......+..+..|..++.-. ......+|.++..+- ..+..+|..|+..|+.++... +..+.
T Consensus 240 ~~~~~~~a~~~L~~l~~~~~~~--~~~~~~i~~L~~ll~---------~~~~~v~~~a~~~L~~L~~~~----~~~~~~~ 304 (529)
T 1jdh_A 240 SQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLG---------SDDINVVTCAAGILSNLTCNN----YKNKMMV 304 (529)
T ss_dssp CHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTT---------CSCHHHHHHHHHHHHHHTTTC----HHHHHHH
T ss_pred ChHHHHHHHHHHHHHhcCChhh--HHHHhHHHHHHHHHc---------CCCHHHHHHHHHHHHHHhcCC----HHHHHHH
Confidence 4455556666666777665322 234577887777651 245689999999999997631 21222
Q ss_pred ---HHHHHHHHHhcCCCCCchhHhHHHHHHHhhC
Q 016189 304 ---RVTRTLLHAFLDPTKSLSQHYGAIQGLAALG 334 (393)
Q Consensus 304 ---Ri~~~l~k~l~d~~~~l~t~YGAi~GL~~lG 334 (393)
..+..|.+.+.++..+......|+..|..|.
T Consensus 305 ~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~ 338 (529)
T 1jdh_A 305 CQVGGIEALVRTVLRAGDREDITEPAICALRHLT 338 (529)
T ss_dssp HHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 2344555655543344567788888888774
No 133
>3kfu_G Glutamyl-tRNA(Gln) amidotransferase subunit C; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=43.64 E-value=48 Score=25.74 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=29.2
Q ss_pred CCCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Q 016189 1 MSIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVR 38 (393)
Q Consensus 1 ms~~~~~~i~~iaes~G~~~ls~~~a~~La~dve~rl~ 38 (393)
|+ ++++.|+.+|+-.-+ .++++-...++.+++..+.
T Consensus 4 M~-i~~e~V~~iA~LArL-~l~eeE~~~~~~~l~~Il~ 39 (92)
T 3kfu_G 4 ME-LSPELLRKLETLAKI-RLSPEEEALLLQDLKRILD 39 (92)
T ss_dssp -C-CCHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHH
T ss_pred Cc-cCHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHH
Confidence 45 899999999999999 5999888888877665443
No 134
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=42.49 E-value=88 Score=28.91 Aligned_cols=48 Identities=10% Similarity=0.004 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHHHHH----------------------H-HHHHHHHHHHHHHHHhCCCccCHhhHHHHhhh
Q 016189 20 NLSSDVALALAPDVE----------------------Y-RVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (393)
Q Consensus 20 ~ls~~~a~~La~dve----------------------~-rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~ 67 (393)
.+++++...+++-+. - .+..+++-|..++.-.+|..++.+||..|++.
T Consensus 226 ~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~ 296 (331)
T 2r44_A 226 TISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYD 296 (331)
T ss_dssp BCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 589999998887552 1 24456777788888889999999999999875
No 135
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=42.36 E-value=34 Score=32.04 Aligned_cols=57 Identities=14% Similarity=0.152 Sum_probs=41.7
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhh
Q 016189 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (393)
Q Consensus 8 ~i~~iaes~G~~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~ 66 (393)
.++.+++..|+ .+++++++.|++...-.++.+.+..-+....+ ..++|.+||+.++.
T Consensus 186 ~l~~~~~~~~~-~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~~~-~~~i~~~~v~~~~~ 242 (373)
T 1jr3_A 186 QLEHILNEEHI-AHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQVSTQAVSAMLG 242 (373)
T ss_dssp HHHHHHHHHTC-CBCHHHHHHHHHHSSSCHHHHHHHHHHHHHHT-TTCBCHHHHHHHTT
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhc-CCcccHHHHHHHhC
Confidence 34445567788 59999999999887766776666665555544 46799999988873
No 136
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=39.70 E-value=4.4e+02 Score=29.43 Aligned_cols=89 Identities=13% Similarity=0.145 Sum_probs=49.9
Q ss_pred hcCCcccchhhHHHHHHHHHhhccCChHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHH---hcc-ccCCCCC---
Q 016189 201 MDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCL---VSK-RLGNRFS--- 273 (393)
Q Consensus 201 tD~gL~~LlPy~~~fi~e~v~~nl~nl~~L~~ll~~v~ALl~N~~l~ie~YlHqLlpslltcl---l~k-~l~~~~~--- 273 (393)
..+.++++++++..|... .+...-...+.+-.+++++..+..++.+..++|.++.++ +.| .......
T Consensus 345 ~~~~l~~~l~~lL~~t~~------~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~ 418 (1204)
T 3a6p_A 345 TPSNFGKYLESFLAFTTH------PSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPS 418 (1204)
T ss_dssp CCTTHHHHHHHHHHHHTS------SCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTH
T ss_pred ChhHHHHHHHHHHHHHhC------ccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcc
Confidence 445566666666665532 244444444555556777765433333444555555544 333 1211000
Q ss_pred ---------------CcchHHHHHHHHHHHHHHHHcC
Q 016189 274 ---------------DNHWDLRNFVADLIASICTRFG 295 (393)
Q Consensus 274 ---------------~~h~~LR~~AA~lL~~I~~~~~ 295 (393)
..-|..|...+.++..+|..+.
T Consensus 419 ~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p 455 (1204)
T 3a6p_A 419 CEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDP 455 (1204)
T ss_dssp HHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred hhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 1247899999999999998763
No 137
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=39.07 E-value=3e+02 Score=29.62 Aligned_cols=141 Identities=15% Similarity=0.183 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHH------cCCCchh
Q 016189 227 FSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTR------FGHVYQN 300 (393)
Q Consensus 227 l~~L~~ll~~v~ALl~N~~l~ie~YlHqLlpslltcll~k~l~~~~~~~h~~LR~~AA~lL~~I~~~------~~~~y~~ 300 (393)
........+++.+|..|+...-.--=+.-+|+++..+....- ..+ ..|..||..|++|.-. |+ .|..
T Consensus 471 ~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~----~~~--~~k~~AA~ALArLlis~np~~~f~-~~~~ 543 (778)
T 3opb_A 471 PNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQD----IGE--PIRILGCRALTRMLIFTNPGLIFK-KYSA 543 (778)
T ss_dssp HHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC-------CC--HHHHHHHHHHHHHHHTSCHHHHSS-SSCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCC----cch--HHHHHHHHHHHHHHhcCCHHHHcC-CCcc
Confidence 344556778888888887664443334567888777644311 001 5899999999999832 33 1221
Q ss_pred hHHHHHHHHHHHhc-CCCC-----------CchhHhHHHHHHHhhCH------HhHHHhcccchHHHHHhhhHhHhhhhh
Q 016189 301 LQSRVTRTLLHAFL-DPTK-----------SLSQHYGAIQGLAALGP------SVVHLLILPNLELYLKFLEPEMLLEKQ 362 (393)
Q Consensus 301 L~~Ri~~~l~k~l~-d~~~-----------~l~t~YGAi~GL~~lG~------~~vr~~ilP~l~~~~~~l~~~l~~~~~ 362 (393)
+ -.++-|.+-|. +|.. +.-.+|-|+.+|..|-. +.+|..|+-. ...|..|+.-|..
T Consensus 544 ~--~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~-~ga~~~L~~LL~s--- 617 (778)
T 3opb_A 544 L--NAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVST-KVYWSTIENLMLD--- 617 (778)
T ss_dssp T--THHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHS-HHHHHHHHHGGGC---
T ss_pred c--cchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHh-cCHHHHHHHHHhC---
Confidence 1 35566666544 2332 12348999999877732 3456554432 1256666655543
Q ss_pred hhhhHHHHHHHHHhHhhh
Q 016189 363 KNEMKRHEAWRVYGALQV 380 (393)
Q Consensus 363 ~~~~~~~~a~~v~~~l~~ 380 (393)
.+...|-.|..+...|..
T Consensus 618 ~n~~VrrAA~elI~NL~~ 635 (778)
T 3opb_A 618 ENVPLQRSTLELISNMMS 635 (778)
T ss_dssp SSHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhC
Confidence 234566667666666663
No 138
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=38.74 E-value=66 Score=30.17 Aligned_cols=63 Identities=13% Similarity=0.135 Sum_probs=45.7
Q ss_pred CChHHHHHHHHHc---CC--CCCCHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHhCCCccCHhhHHHHhhhc
Q 016189 4 VPKETIEVIAQSI---GV--YNLSSDVALALAPDVE---Y---RVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (393)
Q Consensus 4 ~~~~~i~~iaes~---G~--~~ls~~~a~~La~dve---~---rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~~ 68 (393)
++.+.+..+.+.. |. ..+++++.+.+++... - ++.++++.|...+. ++.+++.+||..|+...
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 197 YDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDY 270 (384)
T ss_dssp CCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHH
Confidence 4556666655543 33 3689999999998887 2 35567777777766 56789999999999775
No 139
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.71 E-value=29 Score=34.91 Aligned_cols=42 Identities=19% Similarity=0.132 Sum_probs=34.1
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhh
Q 016189 26 ALALAPDVE----YRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (393)
Q Consensus 26 a~~La~dve----~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~ 67 (393)
...||+..+ -.|+.++++|..++.+.+|..+|.+|+..|++.
T Consensus 377 l~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~r 422 (437)
T 4b4t_I 377 LETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKER 422 (437)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 445555443 458899999999999999999999999999864
No 140
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=37.78 E-value=1.4e+02 Score=32.73 Aligned_cols=182 Identities=9% Similarity=0.113 Sum_probs=108.0
Q ss_pred cCcHHHHHHHHHHHHHhhcC---------Cc----hHHHHHHHHhhhhcC----------CcccchhhHHHHHHHHHhhc
Q 016189 167 VLSKELQLYFDKIRELTVSR---------SN----STVFKQALLSLAMDS----------GLHPLVPYFTYFISEEVTRS 223 (393)
Q Consensus 167 ~LS~Elq~yf~~It~a~~~~---------~~----~~~~~~aL~sL~tD~----------gL~~LlPy~~~fi~e~v~~n 223 (393)
.+....+.+|.++.++++.. ++ ++ ++.+...|.+- |-...+++...++..-+...
T Consensus 371 ~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed--~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~ 448 (980)
T 3ibv_A 371 ELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEE--EAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTA 448 (980)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSST--HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHccCCCccccccccchhH--HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 46677788999998887542 11 10 01111122221 22334554444555444433
Q ss_pred c-----CChHHHHHHHHHHHHh---hcCCCcc---cccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHH
Q 016189 224 L-----KNFSLLFALMRVARSL---LRNPHIH---IEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICT 292 (393)
Q Consensus 224 l-----~nl~~L~~ll~~v~AL---l~N~~l~---ie~YlHqLlpslltcll~k~l~~~~~~~h~~LR~~AA~lL~~I~~ 292 (393)
+ .++..+...+..+.++ +.|.... ..+++.++++.+...+ ...+ +.+.|-.+|..+-.++++-++
T Consensus 449 l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll-~s~i---~~~~hp~V~~~~~~~l~rys~ 524 (980)
T 3ibv_A 449 ATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVT-TSQV---CRHPHPLVQLLYMEILVRYAS 524 (980)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHH-HSST---TTCCCHHHHHHHHHHHHHTGG
T ss_pred hcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHH-hCCC---CCCCCHHHHHHHHHHHHHHHH
Confidence 2 2355566666555554 3333322 3466667776544443 3222 245799999999999999887
Q ss_pred HcCCCchhhHHHHHHHHHH--HhcCCCCCchhHhHHHHHHHhhCHHhHHHhcccchHHHHHhhhHhHh
Q 016189 293 RFGHVYQNLQSRVTRTLLH--AFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEML 358 (393)
Q Consensus 293 ~~~~~y~~L~~Ri~~~l~k--~l~d~~~~l~t~YGAi~GL~~lG~~~vr~~ilP~l~~~~~~l~~~l~ 358 (393)
=+.. .+..-+.++..+.. .+.|+++... --|-..+..|-.+. +..+.|++..++..+++.+.
T Consensus 525 ~~~~-~~~~l~~~L~~ll~~~gl~~~~~~V~--~~a~~af~~f~~~~-~~~L~~~~~~il~~l~~lL~ 588 (980)
T 3ibv_A 525 FFDY-ESAAIPALIEYFVGPRGIHNTNERVR--PRAWYLFYRFVKSI-KKQVVNYTESSLAMLGDLLN 588 (980)
T ss_dssp GGGT-CCTTHHHHHHHHTSTTTTTCCCTTTH--HHHHHHHHHHHHHT-TTTCSSSHHHHHHHTTGGGC
T ss_pred HHhc-CchhHHHHHHHHhccccccCCChhHH--HHHHHHHHHHHHHh-hHHhhhHHHHHHHHHHHhhc
Confidence 7764 46677788888877 7776665444 33555566665543 44678999999999988765
No 141
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=36.85 E-value=66 Score=29.19 Aligned_cols=55 Identities=15% Similarity=0.130 Sum_probs=40.7
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhh
Q 016189 9 IEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (393)
Q Consensus 9 i~~iaes~G~~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~ 66 (393)
++.+++..|+ .+++++++.|++...-.++..++..-+..... +.+|.+||..++.
T Consensus 175 l~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~~--~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 175 LLQIIKLEDV-KYTNDGLEAIIFTAEGDMRQAINNLQSTVAGH--GLVNADNVFKIVD 229 (323)
T ss_dssp HHHHHHHHTC-CBCHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--SSBCHHHHHHHHT
T ss_pred HHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CCcCHHHHHHHHC
Confidence 4445556788 49999999999988777777766665555443 4799999998874
No 142
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=36.84 E-value=80 Score=29.50 Aligned_cols=49 Identities=14% Similarity=0.137 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHHHH---------H---HHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhhc
Q 016189 20 NLSSDVALALAPDV---------E---YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (393)
Q Consensus 20 ~ls~~~a~~La~dv---------e---~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~~ 68 (393)
.+++++.+.+++.. . .++.++++.|...+...++.+++.+||..|+...
T Consensus 214 ~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~ 274 (389)
T 1fnn_A 214 SYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEV 274 (389)
T ss_dssp SSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence 68999999999888 2 4467888888888888888999999999998764
No 143
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=36.73 E-value=1.3e+02 Score=31.17 Aligned_cols=143 Identities=12% Similarity=0.164 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhhc-CCchHHHHHHH---HhhhhcCCcccchhhHHHHHHHHHhhccCChHHHHHHHHHHHHhhcCCCccc
Q 016189 173 QLYFDKIRELTVS-RSNSTVFKQAL---LSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHI 248 (393)
Q Consensus 173 q~yf~~It~a~~~-~~~~~~~~~aL---~sL~tD~gL~~LlPy~~~fi~e~v~~nl~nl~~L~~ll~~v~ALl~N~~l~i 248 (393)
+.+...+.. |+. .+|...+..|| ..|-++..+..++..+..|+.+. +.+.-..+++-+..+..+=.=..
T Consensus 367 ~~~~~~i~~-~L~~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~eL~~yl~~~------d~~~~~~~v~~I~~la~k~~~~~ 439 (621)
T 2vgl_A 367 KTHIETVIN-ALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETA------DYSIREEIVLKVAILAEKYAVDY 439 (621)
T ss_dssp HTTHHHHHH-HHTTCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHCSST
T ss_pred HHHHHHHHH-HhccCCCHhHHHHHHHHHHHHcChhhHHHHHHHHHHHHHhc------CHHHHHHHHHHHHHHHHhcCCcH
Confidence 344444444 334 45555666655 44566667888888888888642 32222223333333332211123
Q ss_pred ccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHhcCCCCCchhHhHHHH
Q 016189 249 EPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQ 328 (393)
Q Consensus 249 e~YlHqLlpslltcll~k~l~~~~~~~h~~LR~~AA~lL~~I~~~~~~~y~~L~~Ri~~~l~k~l~d~~~~l~t~YGAi~ 328 (393)
+-|+.-|+. +++.- |.. +.+.+...+..|+.+ .+.++..+...|...+.||...-.-...|.+
T Consensus 440 ~~~v~~Ll~-ll~~~-----~~~-------v~~ev~~~l~~ii~~----~~~~~~~~~~~l~~~l~~~~~~~~li~~~~w 502 (621)
T 2vgl_A 440 TWYVDTILN-LIRIA-----GDY-------VSEEVWYRVIQIVIN----RDDVQGYAAKTVFEALQAPACHENLVKVGGY 502 (621)
T ss_dssp HHHHHHHHH-HHHHH-----GGG-------SCSHHHHHHHHHHGG----GCSCHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred HHHHHHHHH-HHHhh-----ccc-------chHHHHHHHHHHHhC----ChhHHHHHHHHHHHHHcCccchHHHHHHHHH
Confidence 455554443 22221 110 122233444455543 3778889999999999988766566668889
Q ss_pred HHHhhCHHhHH
Q 016189 329 GLAALGPSVVH 339 (393)
Q Consensus 329 GL~~lG~~~vr 339 (393)
.+.+.|...-.
T Consensus 503 ilGEy~~~~~~ 513 (621)
T 2vgl_A 503 ILGEFGNLIAG 513 (621)
T ss_dssp HHHHHTHHHHS
T ss_pred HhcchHHHhcc
Confidence 99999886544
No 144
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=36.72 E-value=47 Score=23.66 Aligned_cols=41 Identities=22% Similarity=0.333 Sum_probs=33.1
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH-HHHHHHHH
Q 016189 3 IVPKETIEVIAQSIGVYNLSSDVALALAPDVEYR-VREIMQEA 44 (393)
Q Consensus 3 ~~~~~~i~~iaes~G~~~ls~~~a~~La~dve~r-l~~iiq~a 44 (393)
.++.+.|+.+.+++|+ ++.++-...++..++-. +.++|.++
T Consensus 16 ~~t~~~I~~il~aaGv-eve~~~~~~~~~~L~gk~i~elI~~~ 57 (58)
T 3a1y_A 16 EINEENLKAVLQAAGV-EPEEARIKALVAALEGVNIDEVIEKA 57 (58)
T ss_dssp CCCHHHHHHHHHHTTC-CCCHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCC-CccHHHHHHHHHHHCCCCHHHHHHcc
Confidence 3578899999999999 69999999999888654 66666544
No 145
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=36.68 E-value=35 Score=30.49 Aligned_cols=43 Identities=14% Similarity=0.160 Sum_probs=35.3
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHhCCCccCHhhHHHHhhhc
Q 016189 26 ALALAPDVEY----RVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (393)
Q Consensus 26 a~~La~dve~----rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~~ 68 (393)
...++....- .|+.++++|..++.+.+++.++.+|+..|++..
T Consensus 206 ~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~ 252 (257)
T 1lv7_A 206 AAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKI 252 (257)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Confidence 4556665543 688899999999999999999999999999865
No 146
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=36.45 E-value=38 Score=30.78 Aligned_cols=55 Identities=16% Similarity=0.094 Sum_probs=41.3
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHh
Q 016189 8 TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSAL 65 (393)
Q Consensus 8 ~i~~iaes~G~~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al 65 (393)
.++.+++..|+ .+++++++.|++...-.++++++..-+.... ...+|.+||..++
T Consensus 169 ~l~~~~~~~~~-~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~--~~~i~~~~v~~~~ 223 (319)
T 2chq_A 169 RLLEICEKEGV-KITEDGLEALIYISGGDFRKAINALQGAAAI--GEVVDADTIYQIT 223 (319)
T ss_dssp HHHHHHHTTCC-CBCHHHHHHHHHTTTTCHHHHHHHHHHHHHS--SSCBCHHHHHHHT
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHH
Confidence 34556667788 5999999999988777777777766665543 3479999998875
No 147
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=35.43 E-value=1.3e+02 Score=30.65 Aligned_cols=146 Identities=17% Similarity=0.154 Sum_probs=0.0
Q ss_pred ccCCccccCcHHHHHHHHHHHHHhhcCCchHHHHHHHHhh------hhcCCcccchhhHHHHHHHHHhhccCC---hHHH
Q 016189 160 IRLPVKHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSL------AMDSGLHPLVPYFTYFISEEVTRSLKN---FSLL 230 (393)
Q Consensus 160 ik~~~~h~LS~Elq~yf~~It~a~~~~~~~~~~~~aL~sL------~tD~gL~~LlPy~~~fi~e~v~~nl~n---l~~L 230 (393)
+++..+..+++|.+.|+...+.-++..-..+.+.-.++-| ++-+|.|+|++++....--.-.-+..| +..+
T Consensus 162 l~~l~~~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRl 241 (507)
T 3u0r_A 162 LKTLPDEVLTKEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRL 241 (507)
T ss_dssp GGGSCTTTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHH
T ss_pred HhhcchhhccHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHH
Q ss_pred HHHHHHHHHhhcCCCc---ccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHcC--CCchhhHHHH
Q 016189 231 FALMRVARSLLRNPHI---HIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFG--HVYQNLQSRV 305 (393)
Q Consensus 231 ~~ll~~v~ALl~N~~l---~ie~YlHqLlpslltcll~k~l~~~~~~~h~~LR~~AA~lL~~I~~~~~--~~y~~L~~Ri 305 (393)
+..++++--+.+...= +++.|..+++| .-..+...-..+.|.||-. ++++.++.-.| ..-..+-+-|
T Consensus 242 I~C~~~ALP~FS~~v~StkFv~y~~~kIlP------~l~~L~e~~~~~~~kL~LL--K~lAE~s~~~~~~e~a~~~l~~i 313 (507)
T 3u0r_A 242 LQCTRQAVPLFSKNVHSTRFVTYFCEQVLP------NLGTLTTPVEGLDIQLEVL--KLLAEMSSFCGDMEKLETNLRKL 313 (507)
T ss_dssp HHHHHHHGGGCBTTBCCHHHHHHHHHHTGG------GTTCCCCC--CCCHHHHHH--HHHHHHHTTCCCCTTHHHHHHHH
T ss_pred HHHHHHHHHHhccCCChHHHHHHHHHhhcc------chhhccccccchHHHHHHH--HHHHHHccCCCccchHHHHHHHH
Q ss_pred HHHHHHHh
Q 016189 306 TRTLLHAF 313 (393)
Q Consensus 306 ~~~l~k~l 313 (393)
...|++.+
T Consensus 314 y~~L~~ym 321 (507)
T 3u0r_A 314 FDKLLEYM 321 (507)
T ss_dssp HHHHHTTS
T ss_pred HHHHHHHC
No 148
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=33.55 E-value=70 Score=26.40 Aligned_cols=46 Identities=11% Similarity=0.088 Sum_probs=39.3
Q ss_pred HHHHHHHcCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 016189 9 IEVIAQSIGV----YNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRT 54 (393)
Q Consensus 9 i~~iaes~G~----~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~ 54 (393)
|+.|++...- -+...++..+|-+..|.+|-.+.+++--++.|++|.
T Consensus 11 VREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~g 60 (121)
T 2ly8_A 11 VKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPR 60 (121)
T ss_dssp HHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred HHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCcc
Confidence 5667766532 378999999999999999999999999999999774
No 149
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=33.23 E-value=3e+02 Score=25.49 Aligned_cols=116 Identities=10% Similarity=0.083 Sum_probs=71.8
Q ss_pred cchhhHHHHHHHHHhhccCChHHHHHHHHHHHHhhcCCCcccccch-hhhHHHHHHHHhccccCCCCCCcchHHHHHHHH
Q 016189 207 PLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYL-HQMMPSVITCLVSKRLGNRFSDNHWDLRNFVAD 285 (393)
Q Consensus 207 ~LlPy~~~fi~e~v~~nl~nl~~L~~ll~~v~ALl~N~~l~ie~Yl-HqLlpslltcll~k~l~~~~~~~h~~LR~~AA~ 285 (393)
..+|.|++.+... .+.......+..+..|+.|..-..+..+ +..+|.++.++-+ .+..+|..|+.
T Consensus 124 g~l~~Ll~LL~~~-----~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~---------~d~~v~~~A~~ 189 (296)
T 1xqr_A 124 GALRKLLRLLDRD-----ACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ---------QVQKLKVKSAF 189 (296)
T ss_dssp THHHHHHHHHHHC-----SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHS---------SCHHHHHHHHH
T ss_pred CCHHHHHHHHccC-----CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcC---------CCHHHHHHHHH
Confidence 4678888777642 1345555666677777766543333333 4788888887622 35689999999
Q ss_pred HHHHHHHHcCCCchhhHH-----HHHHHHHHHhcCCCCCchhHhHHHHHHHhh---CHHhHHHhc
Q 016189 286 LIASICTRFGHVYQNLQS-----RVTRTLLHAFLDPTKSLSQHYGAIQGLAAL---GPSVVHLLI 342 (393)
Q Consensus 286 lL~~I~~~~~~~y~~L~~-----Ri~~~l~k~l~d~~~~l~t~YGAi~GL~~l---G~~~vr~~i 342 (393)
.|+.++... +..+. -++..|.+.|.++ ....+.-|+.+|..+ ++.+++.+-
T Consensus 190 aLs~L~~~~----~~~~~~vv~~g~i~~Lv~LL~~~--d~~v~~~al~aL~~l~~~~~~~~~~~~ 248 (296)
T 1xqr_A 190 LLQNLLVGH----PEHKGTLCSMGMVQQLVALVRTE--HSPFHEHVLGALCSLVTDFPQGVRECR 248 (296)
T ss_dssp HHHHHHHHC----GGGHHHHHHTTHHHHHHHHHTSC--CSTHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCC----hHHHHHHHHcCCHHHHHHHHcCC--ChhHHHHHHHHHHHHHhCChhHHHHHh
Confidence 999999862 33333 3456777776654 344444455555444 666666543
No 150
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=32.73 E-value=34 Score=24.28 Aligned_cols=30 Identities=20% Similarity=0.429 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHhC--------------CCccCHhhHHHHhhh
Q 016189 38 REIMQEAIKCMRHAH--------------RTVLTANDVDSALNL 67 (393)
Q Consensus 38 ~~iiq~a~k~~~hsk--------------R~~Lt~~Di~~Al~~ 67 (393)
.++|+.|++|+.+-+ .|-||.++|+.||+-
T Consensus 10 e~li~~Av~FL~dp~V~~sp~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 10 EPLIATAVKFLQNSRVRQSPLATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HHHHHHHHHHHHCTTGGGSCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChhhhcCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 357788888887654 247999999999863
No 151
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=32.44 E-value=37 Score=30.29 Aligned_cols=46 Identities=24% Similarity=0.298 Sum_probs=35.9
Q ss_pred CCHHH-HHHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHhhHHHHhh
Q 016189 21 LSSDV-ALALAPDVE----YRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (393)
Q Consensus 21 ls~~~-a~~La~dve----~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~ 66 (393)
+++++ ...||+..+ -.|+.++++|...+...++.++|.+|+..|++
T Consensus 204 ~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~~ 254 (254)
T 1ixz_A 204 LAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAAS 254 (254)
T ss_dssp BCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHTC
T ss_pred CCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHhC
Confidence 44443 556776654 35889999999999888888999999999874
No 152
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=31.22 E-value=1.2e+02 Score=30.85 Aligned_cols=59 Identities=17% Similarity=0.111 Sum_probs=46.1
Q ss_pred CChHHHHHHHHHcCCCCCCHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhCCCccCHhhHH
Q 016189 4 VPKETIEVIAQSIGVYNLSSDVALALAPDVEY-------------RVREIMQEAIKCMRHAHRTVLTANDVD 62 (393)
Q Consensus 4 ~~~~~i~~iaes~G~~~ls~~~a~~La~dve~-------------rl~~iiq~a~k~~~hskR~~Lt~~Di~ 62 (393)
++.+.+..+.+.+.--.+++++.+.+++-+.. .+..++.-|.-.+.-.+|..++++||.
T Consensus 209 ~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~ 280 (500)
T 3nbx_X 209 VTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI 280 (500)
T ss_dssp BCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG
T ss_pred ecHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH
Confidence 45566666666554446999999988887743 355688889999999999999999999
No 153
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.91 E-value=40 Score=33.48 Aligned_cols=42 Identities=19% Similarity=0.167 Sum_probs=34.7
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhh
Q 016189 26 ALALAPDVE----YRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (393)
Q Consensus 26 a~~La~dve----~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~ 67 (393)
...||+..+ -.|+.++++|..++.+.+|..+|.+|+..|++.
T Consensus 343 l~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~ 388 (405)
T 4b4t_J 343 LRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGK 388 (405)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 455666544 468899999999998889999999999999974
No 154
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=30.78 E-value=98 Score=28.58 Aligned_cols=61 Identities=15% Similarity=0.177 Sum_probs=45.9
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhhcCC
Q 016189 9 IEVIAQSIGVYNLSSDVALALAPDVE---YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNV 70 (393)
Q Consensus 9 i~~iaes~G~~~ls~~~a~~La~dve---~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~~ni 70 (393)
++..++..|+ .+++++.+.|+.... ..+.++++.+..++...++..++.+|+..++...++
T Consensus 193 l~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~ 256 (338)
T 3pfi_A 193 LQKAALKLNK-TCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGV 256 (338)
T ss_dssp HHHHHHHTTC-EECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTC
T ss_pred HHHHHHhcCC-CCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHhCC
Confidence 4456667776 589999999988432 235667777777887777889999999999987543
No 155
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=30.33 E-value=42 Score=30.52 Aligned_cols=47 Identities=23% Similarity=0.285 Sum_probs=35.9
Q ss_pred CCCHHH-HHHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHhhHHHHhh
Q 016189 20 NLSSDV-ALALAPDVE----YRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (393)
Q Consensus 20 ~ls~~~-a~~La~dve----~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~ 66 (393)
.+++++ ...+|...+ -.|+.++++|..++...++..+|.+|+..|++
T Consensus 227 ~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~~ 278 (278)
T 1iy2_A 227 PLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAAS 278 (278)
T ss_dssp CBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHTC
T ss_pred CCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHhC
Confidence 344444 556666554 35889999999999888888999999999874
No 156
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=28.91 E-value=73 Score=27.81 Aligned_cols=96 Identities=13% Similarity=0.206 Sum_probs=71.0
Q ss_pred CCCCChHHHHHHHHH-cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhhcCCCCc-ccCCC
Q 016189 1 MSIVPKETIEVIAQS-IGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPI-YGFAS 78 (393)
Q Consensus 1 ms~~~~~~i~~iaes-~G~~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~~niepl-yGy~s 78 (393)
|++++-.-+.++.+. +|+ .+..+-++.+.+-|+..+-.++.-|..-++-.+|..+...|+ |+ =|+..
T Consensus 24 m~vmg~~kferlFR~aagL-DvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DL----------PITKGlqE 92 (171)
T 1r4v_A 24 LRPKGFDKLDHYFRTELDI-DLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADL----------NITKALEE 92 (171)
T ss_dssp TSCTTHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGS----------CCCHHHHH
T ss_pred HhcCChHHHHHHHHHHhcc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC----------CccHHHHH
Confidence 577787778876654 566 699999999999999999999999999999999999988875 22 13222
Q ss_pred CCCcceeecCCCCceeeecCcccchHHhhcCCCCCCCCCC
Q 016189 79 GDSLRFKRASGLKDLYYIDDKDVELRNVIETPLPKAPLDT 118 (393)
Q Consensus 79 ~~~l~f~~~~g~~~l~~~~D~evdl~~ii~~~lpk~P~~~ 118 (393)
+-. .|++ -|++++++.+++.-.-.+|.+-
T Consensus 93 si~-~Fr~----------lde~iel~pIL~~la~~PPld~ 121 (171)
T 1r4v_A 93 HIK-NFQK----------IEQDMGVDELLEYIAFIPPVEM 121 (171)
T ss_dssp HHH-HHHT----------CCSCCSHHHHHHHHTCCCSCSS
T ss_pred HHH-HHHh----------cccccchHHHHHHHHhCCCCCC
Confidence 110 2433 2888999998876555556654
No 157
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=28.83 E-value=62 Score=29.65 Aligned_cols=60 Identities=17% Similarity=0.206 Sum_probs=41.9
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhhcC
Q 016189 9 IEVIAQSIGVYNLSSDVALALAPDVE---YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRN 69 (393)
Q Consensus 9 i~~iaes~G~~~ls~~~a~~La~dve---~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~~n 69 (393)
++..++..|. .+++++.+.|+.... ..++++++.+..++...++..++.+|+..++...+
T Consensus 177 l~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~ 239 (324)
T 1hqc_A 177 VMRDARLLGV-RITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALG 239 (324)
T ss_dssp HHHHHHTTTC-CCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHT
T ss_pred HHHHHHhcCC-CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc
Confidence 3445555677 599999999988642 23555666665555555677899999999987754
No 158
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=28.75 E-value=4.3e+02 Score=25.96 Aligned_cols=139 Identities=16% Similarity=0.142 Sum_probs=69.1
Q ss_pred HHHHHHHhhcCCchHHHHHHHHhh------hhcCCccc-----chhhHHHHHHHHHhhccCChHHHHHHHHHHHHhhcCC
Q 016189 176 FDKIRELTVSRSNSTVFKQALLSL------AMDSGLHP-----LVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNP 244 (393)
Q Consensus 176 f~~It~a~~~~~~~~~~~~aL~sL------~tD~gL~~-----LlPy~~~fi~e~v~~nl~nl~~L~~ll~~v~ALl~N~ 244 (393)
.+++.+.+.+++. +.+..|...+ +.+|-++. .+|.|++|+... ++......-...+..|....
T Consensus 59 i~~~v~~l~s~d~-~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~-----~~~~lq~~Aa~aL~nias~~ 132 (510)
T 3ul1_B 59 VEDIVKGINSNNL-ESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT-----DCSPIQFESAWALTNIASGT 132 (510)
T ss_dssp HHHHHHHHTSSCH-HHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCT-----TCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHhcCCCH-HHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCC-----CCHHHHHHHHHHHHHHhcCC
Confidence 3566776665433 3333343332 24554443 589999887421 22222222233333333221
Q ss_pred Ccccccch-hhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHcCCCchhhHHHH-----HHHHHHHhcCCCC
Q 016189 245 HIHIEPYL-HQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRV-----TRTLLHAFLDPTK 318 (393)
Q Consensus 245 ~l~ie~Yl-HqLlpslltcll~k~l~~~~~~~h~~LR~~AA~lL~~I~~~~~~~y~~L~~Ri-----~~~l~k~l~d~~~ 318 (393)
.=+-..-+ +-.+|.++.++-+ .+..+|+.|+..|+.|+.. .+..+..+ +..|...+.+++.
T Consensus 133 ~e~~~~vv~~GaIp~Lv~lL~s---------~~~~v~e~A~~aL~nLa~d----~~~~r~~v~~~G~i~~Ll~lL~~~~~ 199 (510)
T 3ul1_B 133 SEQTKAVVDGGAIPAFISLLAS---------PHAHISEQAVWALGNIAGD----GSAFRDLVIKHGAIDPLLALLAVPDL 199 (510)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTC---------SCHHHHHHHHHHHHHHHTT----CHHHHHHHHHTTCHHHHHHHTCSSCG
T ss_pred HHHHHHHHHCCCHHHHHHHHcC---------CCHHHHHHHHHHHHHHHhC----CHHHHHHHHHcCChHHHHHHHHhccc
Confidence 11111111 2368888877622 3458999999999999842 23444444 3456666654432
Q ss_pred C---chhHhHHHHHHHhh
Q 016189 319 S---LSQHYGAIQGLAAL 333 (393)
Q Consensus 319 ~---l~t~YGAi~GL~~l 333 (393)
+ ....--+.+.|+.+
T Consensus 200 ~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 200 STLACGYLRNLTWTLSNL 217 (510)
T ss_dssp GGSCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 2 22334455555554
No 159
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=28.26 E-value=92 Score=29.58 Aligned_cols=59 Identities=10% Similarity=0.052 Sum_probs=41.7
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHH------------hCCCccCHhhHHHHhhhc
Q 016189 9 IEVIAQSIGVYNLSSDVALALAPDVE----YRVREIMQEAIKCMRH------------AHRTVLTANDVDSALNLR 68 (393)
Q Consensus 9 i~~iaes~G~~~ls~~~a~~La~dve----~rl~~iiq~a~k~~~h------------skR~~Lt~~Di~~Al~~~ 68 (393)
++.+++..|+ .++++....|++..+ ..++.++++|.....+ .....++.+|+..|++..
T Consensus 260 l~~~~~~~~~-~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~ 334 (357)
T 3d8b_A 260 VINLMSKEQC-CLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTV 334 (357)
T ss_dssp HHHHHHTSCB-CCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHHH
T ss_pred HHHHHhhcCC-CccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhc
Confidence 4455666676 488888888888664 3678888887655554 234579999999999754
No 160
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.65 E-value=50 Score=33.50 Aligned_cols=41 Identities=22% Similarity=0.139 Sum_probs=33.7
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhh
Q 016189 27 LALAPDVE----YRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (393)
Q Consensus 27 ~~La~dve----~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~ 67 (393)
..||+..+ -.|+.++++|..++.+.+|+.+|.+|+..|++.
T Consensus 405 ~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~k 449 (467)
T 4b4t_H 405 ELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDK 449 (467)
T ss_dssp HHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 44555443 358899999999999999999999999999975
No 161
>3bl2_A V-BCL-2; protein-protein complex, viral BCL-2, apoptosis, autophagy, antiviral defense, coiled coil, cytoplasm, golgi apparatus, membrane; 2.30A {Murid herpesvirus 4} SCOP: f.1.4.1 PDB: 3dvu_A 2abo_A
Probab=26.89 E-value=94 Score=25.11 Aligned_cols=44 Identities=20% Similarity=0.348 Sum_probs=34.8
Q ss_pred hhhHHHHHHHHHHHhcCCCCCchhHhHHHHHHHhhCHHhHHHhcccchH
Q 016189 299 QNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLE 347 (393)
Q Consensus 299 ~~L~~Ri~~~l~k~l~d~~~~l~t~YGAi~GL~~lG~~~vr~~ilP~l~ 347 (393)
.+-+..+++.|...+.|-- ..|-++|+.+.|..+.+.+++|--=
T Consensus 61 ~nW~~~l~~Lf~slf~D~I-----N~GR~vGfFdVGryVCeElL~~~sW 104 (131)
T 3bl2_A 61 KNWKRDLSKLFTSLFVDVI-----NSGRIVGFFDVGRYVCEEVLCPGSW 104 (131)
T ss_dssp GGHHHHHHHHHHHHTSSCC-----CHHHHHHHHHHHHHHHHTTSCTTCC
T ss_pred HHHHhhHHHHHHHHHHHHh-----cccCeEeeeehHHHHHHHHhCCCch
Confidence 4456678888887777643 3799999999999999999998643
No 162
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.85 E-value=52 Score=32.96 Aligned_cols=42 Identities=17% Similarity=0.067 Sum_probs=33.8
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhh
Q 016189 26 ALALAPDVE----YRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (393)
Q Consensus 26 a~~La~dve----~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~ 67 (393)
...||+..+ -.|+.++++|..++.+.+|..+|.+|+..|++.
T Consensus 376 l~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~ 421 (437)
T 4b4t_L 376 FEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRK 421 (437)
T ss_dssp HHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 344555433 358899999999999999999999999999974
No 163
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=26.77 E-value=5.2e+02 Score=28.51 Aligned_cols=64 Identities=11% Similarity=0.077 Sum_probs=46.8
Q ss_pred CcchHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHhcCCCCCchhHhHHHHH--HHhhCHHh
Q 016189 274 DNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQG--LAALGPSV 337 (393)
Q Consensus 274 ~~h~~LR~~AA~lL~~I~~~~~~~y~~L~~Ri~~~l~k~l~d~~~~l~t~YGAi~G--L~~lG~~~ 337 (393)
|.+-.+|..|+.-|+.|--.-.+..+.=-..+.++|.+...|.+....+.|||..+ |..+|...
T Consensus 658 D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n 723 (963)
T 4ady_A 658 DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRN 723 (963)
T ss_dssp CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGT
T ss_pred CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCc
Confidence 56789999999999999865444322222345677888888878889999999875 55666653
No 164
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=26.52 E-value=7e+02 Score=27.78 Aligned_cols=116 Identities=10% Similarity=0.063 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHH
Q 016189 230 LFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTL 309 (393)
Q Consensus 230 L~~ll~~v~ALl~N~~l~ie~YlHqLlpslltcll~k~l~~~~~~~h~~LR~~AA~lL~~I~~~~~~~y~~L~~Ri~~~l 309 (393)
+..+++.+.....++++. ..++|.++..+++-.. +|=.+|..+-.+++..+.-++ ..|..-+.++..+
T Consensus 510 leav~~~~~~~~e~~~l~-----~~~~~~Ll~~ll~~~~------~~p~l~~~~i~~l~~l~~~~~-~~p~~L~~vL~~l 577 (1204)
T 3a6p_A 510 LESVITQMFRTLNREEIP-----VNDGIELLQMVLNFDT------KDPLILSCVLTNVSALFPFVT-YRPEFLPQVFSKL 577 (1204)
T ss_dssp HHHHHHHHHHHSCTTCCC-----HHHHHHHHHHHHHCCC------SCHHHHHHHHHHHHHHGGGGG-TCGGGHHHHHHHH
T ss_pred HHHHHHHHhccccccccc-----HHHHHHHHHHHHhCCC------CChHHHHHHHHHHHHHHHHHh-cCchHHHHHHHHH
Confidence 344444444444444431 1456666666554211 233699999999988887665 4588889999988
Q ss_pred HHHhcCCCC----------CchhHhHHHHHHHhhCHHhHHHhcccchHHHHHhhhHhHh
Q 016189 310 LHAFLDPTK----------SLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEML 358 (393)
Q Consensus 310 ~k~l~d~~~----------~l~t~YGAi~GL~~lG~~~vr~~ilP~l~~~~~~l~~~l~ 358 (393)
.+.+.++.. +-..+.=|-.+|..|..+.= ..++|++..+...++..+.
T Consensus 578 l~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~-~~L~p~~~~i~~~~~~~l~ 635 (1204)
T 3a6p_A 578 FSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYP-QLVLPNFDMLYNHVKQLLS 635 (1204)
T ss_dssp HHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCH-HHHGGGHHHHHHHHHHHHH
T ss_pred HHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHh
Confidence 888776211 11334556666777776554 4568999999988876653
No 165
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=26.42 E-value=58 Score=32.19 Aligned_cols=58 Identities=10% Similarity=0.036 Sum_probs=42.0
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhCCCccCHhhHHHHhhhc
Q 016189 9 IEVIAQSIGVYNLSSDVALALAPDVEYRVR---EIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (393)
Q Consensus 9 i~~iaes~G~~~ls~~~a~~La~dve~rl~---~iiq~a~k~~~hskR~~Lt~~Di~~Al~~~ 68 (393)
++..++..|+ .++++++..|+....--+| .+++.+..++...++ .+|.+++..+|+..
T Consensus 272 L~~~~~~~~~-~i~~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~-~It~~~~~~~l~~~ 332 (440)
T 2z4s_A 272 ARKMLEIEHG-ELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGK-EVDLKEAILLLKDF 332 (440)
T ss_dssp HHHHHHHHTC-CCCTTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSS-CCCHHHHHHHTSTT
T ss_pred HHHHHHHcCC-CCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Confidence 3445666688 5999999999987754444 455666666665554 69999999999764
No 166
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=26.33 E-value=3.5e+02 Score=29.20 Aligned_cols=154 Identities=11% Similarity=0.061 Sum_probs=0.0
Q ss_pred ccchhhHHHHHHHHHhhccCChHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHH
Q 016189 206 HPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVAD 285 (393)
Q Consensus 206 ~~LlPy~~~fi~e~v~~nl~nl~~L~~ll~~v~ALl~N~~l~ie~YlHqLlpslltcll~k~l~~~~~~~h~~LR~~AA~ 285 (393)
+..+|.|++... -.+..........+..|..++...-.--=+-.+|+++..+ .......|+.||.
T Consensus 494 aGaVp~LV~LL~------s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL---------~s~~~~~k~~Aa~ 558 (810)
T 3now_A 494 EGITTALCALAK------TESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMA---------LEGTEKGKRHATQ 558 (810)
T ss_dssp TTHHHHHHHHHT------CCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHH---------HSSCHHHHHHHHH
T ss_pred CcCHHHHHHHHc------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH---------ccCCHHHHHHHHH
Q ss_pred HHHHHHHHcCCCchhhHHHH---HHHHHHHhcCCCCCchhHhHHHHHHHhh--CHHhHHHhcccchHHHHHhhhHhHhhh
Q 016189 286 LIASICTRFGHVYQNLQSRV---TRTLLHAFLDPTKSLSQHYGAIQGLAAL--GPSVVHLLILPNLELYLKFLEPEMLLE 360 (393)
Q Consensus 286 lL~~I~~~~~~~y~~L~~Ri---~~~l~k~l~d~~~~l~t~YGAi~GL~~l--G~~~vr~~ilP~l~~~~~~l~~~l~~~ 360 (393)
.|+.+|..-......-..++ +..|.+ |+++..+.-.++-|+.+|..| +++..+..++= ...+..|+.-+..
T Consensus 559 AL~nL~~~~~p~~~~~~~~~~~aIppLv~-LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~--aG~l~~Lv~LL~s- 634 (810)
T 3now_A 559 ALARIGITINPEVSFSGQRSLDVIRPLLN-LLQQDCTALENFESLMALTNLASMNESVRQRIIK--EQGVSKIEYYLME- 634 (810)
T ss_dssp HHHHHHHHSCHHHHTTTHHHHHTHHHHHH-TTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHHHHS-
T ss_pred HHHHHhcCCChhhhhcchhhhcHHHHHHH-HhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHH--cCCHHHHHHHHcC-
Q ss_pred hhhhhhHHHHHHHHHhHhhh
Q 016189 361 KQKNEMKRHEAWRVYGALQV 380 (393)
Q Consensus 361 ~~~~~~~~~~a~~v~~~l~~ 380 (393)
.+...|..|.++.+-|..
T Consensus 635 --~~~~Vq~~A~~~L~NLa~ 652 (810)
T 3now_A 635 --DHLYLTRAAAQCLCNLVM 652 (810)
T ss_dssp --CCTTHHHHHHHHHHHHTT
T ss_pred --CCHHHHHHHHHHHHHHhC
No 167
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=26.11 E-value=43 Score=31.10 Aligned_cols=57 Identities=16% Similarity=0.068 Sum_probs=37.8
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCcc-CHhhHHHHhhh
Q 016189 9 IEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRH-------AHRTVL-TANDVDSALNL 67 (393)
Q Consensus 9 i~~iaes~G~~~ls~~~a~~La~dve~rl~~iiq~a~k~~~h-------skR~~L-t~~Di~~Al~~ 67 (393)
++..++..|+ .+++++...|+... --+|++..-..+.... .+.+.+ |.+||..++..
T Consensus 175 l~~~~~~~~~-~l~~~~l~~l~~~~-g~~r~l~~~l~~~~~~~~~~l~~~~~~~i~t~~~i~~~~~~ 239 (324)
T 1l8q_A 175 IKEKLKEFNL-ELRKEVIDYLLENT-KNVREIEGKIKLIKLKGFEGLERKERKERDKLMQIVEFVAN 239 (324)
T ss_dssp HHHHHHHTTC-CCCHHHHHHHHHHC-SSHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCC-CCCHHHHHHHHHhC-CCHHHHHHHHHHHHHcCHHHhccccccCCCCHHHHHHHHHH
Confidence 4445666788 69999999999877 5555543333333333 334568 89999998873
No 168
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=25.91 E-value=97 Score=28.00 Aligned_cols=57 Identities=18% Similarity=0.148 Sum_probs=40.1
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhC------------CCccCHhhHHHHhhh
Q 016189 10 EVIAQSIGVYNLSSDVALALAPDVEY----RVREIMQEAIKCMRHAH------------RTVLTANDVDSALNL 67 (393)
Q Consensus 10 ~~iaes~G~~~ls~~~a~~La~dve~----rl~~iiq~a~k~~~hsk------------R~~Lt~~Di~~Al~~ 67 (393)
+.+++..|. .+++++...|+...+- .++.++++|...+.+.. ...+|.+|+..|++.
T Consensus 199 ~~~~~~~~~-~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~ 271 (297)
T 3b9p_A 199 NRLLQKQGS-PLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKR 271 (297)
T ss_dssp HHHHGGGSC-CSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTS
T ss_pred HHHHHhcCC-CCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHH
Confidence 445555665 4888888888876543 56778888766555432 357999999999865
No 169
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.79 E-value=56 Score=32.67 Aligned_cols=43 Identities=12% Similarity=0.071 Sum_probs=34.4
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhhc
Q 016189 26 ALALAPDVE----YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (393)
Q Consensus 26 a~~La~dve----~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~~ 68 (393)
...||+..+ -.|+.++++|...+.+.+|..+|.+|+..|++..
T Consensus 376 l~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v 422 (434)
T 4b4t_M 376 WQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEV 422 (434)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSC
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 344555443 3588999999999988899999999999999753
No 170
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=25.30 E-value=1.3e+02 Score=24.73 Aligned_cols=68 Identities=9% Similarity=0.152 Sum_probs=48.3
Q ss_pred CChHHHHHHHHHcCCCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhhcCCC
Q 016189 4 VPKETIEVIAQSIGVYNLSSDVALALAPDVE--YRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVE 71 (393)
Q Consensus 4 ~~~~~i~~iaes~G~~~ls~~~a~~La~dve--~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~~nie 71 (393)
+.+..++++-.-.....+...+...++..+. ..-.+-++++-+.+-..+..+|+.+++..+|+.++..
T Consensus 2 ~~~~~~~~l~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~g~~ 71 (180)
T 3mse_B 2 ISPNVLNNMKSYMKHSNIRNIIINIMAHELSVINNHIKYINELFYKLDTNHNGSLSHREIYTVLASVGIK 71 (180)
T ss_dssp CCHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHhHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCC
Confidence 3455667777777777788888888887765 3333445555555656677899999999999987654
No 171
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=25.22 E-value=75 Score=26.07 Aligned_cols=57 Identities=7% Similarity=0.047 Sum_probs=41.1
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhh
Q 016189 8 TIEVIAQSIGVYNLSSDVALALAPD------------VEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (393)
Q Consensus 8 ~i~~iaes~G~~~ls~~~a~~La~d------------ve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~ 66 (393)
.+..+.+++|++ . +.+.+.+.+. ...+++++++.|.+.++..+...++++|+=.||-
T Consensus 47 ~~~~iL~~~gvd-~-~~l~~~l~~~l~~~~~~~~~~~~s~~~~~vl~~A~~~A~~~~~~~v~~eHlLlAll 115 (145)
T 3fes_A 47 IAAKVLSKVGFT-E-AYLEGKIVDMEGKGEEISEDIVLSPRSKQILELSGMFANKLKTNYIGTEHILLAII 115 (145)
T ss_dssp HHHHHHHHHTCC-H-HHHHHHHHHHHCCCSCCCSCCEECHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred hHHHHHHHcCCC-H-HHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHH
Confidence 356677777774 1 2222222222 3457899999999999999999999999998883
No 172
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=25.15 E-value=1.4e+02 Score=28.96 Aligned_cols=157 Identities=11% Similarity=0.100 Sum_probs=0.0
Q ss_pred cCcHHHHHHHHHHHHHhhcCCchHHHHHHHHhhhhcCCcccchhhHHHHHHHHHhhcc--CChHHHHHHHHHHHHhhcCC
Q 016189 167 VLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSL--KNFSLLFALMRVARSLLRNP 244 (393)
Q Consensus 167 ~LS~Elq~yf~~It~a~~~~~~~~~~~~aL~sL~tD~gL~~LlPy~~~fi~e~v~~nl--~nl~~L~~ll~~v~ALl~N~ 244 (393)
+.+.|.-.+...-.+.++...++-.|+.|+=+.. .|.+.-|-++.-+.+++..-+ +|......-+.+...+..+.
T Consensus 131 I~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~---kL~~~~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 131 ITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSL---HLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp HCCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHH---HHTTTCHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH---HHhccCHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc
Q ss_pred CcccccchhhhHH-----HHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHcCCCc-hhhHHHHHHHHHHHhcCCCC
Q 016189 245 HIHIEPYLHQMMP-----SVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVY-QNLQSRVTRTLLHAFLDPTK 318 (393)
Q Consensus 245 ~l~ie~YlHqLlp-----slltcll~k~l~~~~~~~h~~LR~~AA~lL~~I~~~~~~~y-~~L~~Ri~~~l~k~l~d~~~ 318 (393)
...+..-+.++-. +...|.+-+ ++.+++... +....++.+.+...|. ++
T Consensus 208 ~~a~~kLv~~l~~~~l~~~~~q~~llr-----------------------~l~~~~~~d~~~~~~~~~~~l~~~L~--~~ 262 (355)
T 3tjz_B 208 RLAVSKMISKFTRHGLKSPFAYCMMIR-----------------------VASRQLEDEDGSRDSPLFDFIESCLR--NK 262 (355)
T ss_dssp HHHHHHHHHHHHSSCCSCHHHHHHHHH-----------------------HHTCC-----------------CCCC--CS
T ss_pred hHHHHHHHHHHhcCCCcChHHHHHHHH-----------------------HHHHhccccchhhHHHHHHHHHHHHc--CC
Q ss_pred CchhHhHHHHHHHhhCH--HhHHHhcccchHHHHH
Q 016189 319 SLSQHYGAIQGLAALGP--SVVHLLILPNLELYLK 351 (393)
Q Consensus 319 ~l~t~YGAi~GL~~lG~--~~vr~~ilP~l~~~~~ 351 (393)
+-...|.|+..+..+.+ ..+.....+-+..++.
T Consensus 263 ~~aVvyEa~k~I~~l~~~~~~~~~~a~~~L~~fLs 297 (355)
T 3tjz_B 263 HEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCS 297 (355)
T ss_dssp SHHHHHHHHHHHTC-----------CCCTHHHHHH
T ss_pred ChHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHc
No 173
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=24.97 E-value=5.4e+02 Score=25.91 Aligned_cols=98 Identities=12% Similarity=0.085 Sum_probs=58.5
Q ss_pred ChHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHcCC-CchhhHHH
Q 016189 226 NFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGH-VYQNLQSR 304 (393)
Q Consensus 226 nl~~L~~ll~~v~ALl~N~~l~ie~YlHqLlpslltcll~k~l~~~~~~~h~~LR~~AA~lL~~I~~~~~~-~y~~L~~R 304 (393)
+.......+..+..|..+..-. ......+|.++..+- ...+.+|..|+..|+.++..... .-.-.+..
T Consensus 237 ~~~~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~---------~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g 305 (644)
T 2z6h_A 237 SQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLG---------SDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 305 (644)
T ss_dssp CHHHHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTT---------CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHc---------CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 4555666777777777664321 234567887776641 24579999999999999863110 00011122
Q ss_pred HHHHHHHHhcCCCCCchhHhHHHHHHHhhC
Q 016189 305 VTRTLLHAFLDPTKSLSQHYGAIQGLAALG 334 (393)
Q Consensus 305 i~~~l~k~l~d~~~~l~t~YGAi~GL~~lG 334 (393)
.+..|.+.+.++.........|+.+|..|.
T Consensus 306 ~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~ 335 (644)
T 2z6h_A 306 GIEALVRTVLRAGDREDITEPAICALRHLT 335 (644)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHccCCcHHHHHHHHHHHHHHh
Confidence 345566665543333566777888888774
No 174
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=24.95 E-value=1.9e+02 Score=21.86 Aligned_cols=61 Identities=20% Similarity=0.233 Sum_probs=42.0
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhhcCCCCcccCCCCC
Q 016189 8 TIEVIAQSIGVYNLSSDVALALAPD-----VEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFASGD 80 (393)
Q Consensus 8 ~i~~iaes~G~~~ls~~~a~~La~d-----ve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~~nieplyGy~s~~ 80 (393)
++..+|+.+|++ .......+.+. -+|..+.-++.|.+.+..+.. .++..||-..+ ||++..
T Consensus 20 ~~~~lA~~~~~s--~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL~~~~~-~~si~~IA~~~---------Gf~~~s 85 (108)
T 3mn2_A 20 TIEKLTALTGIS--SRGIFKAFQRSRGYSPMAFAKRVRLQHAHNLLSDGAT-PTTVTAAALSC---------GFSNLG 85 (108)
T ss_dssp CHHHHHHHHTCC--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHSSSS-CCCHHHHHHHT---------TCCCHH
T ss_pred CHHHHHHHHCCC--HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHcCCC-CCCHHHHHHHh---------CCCCHH
Confidence 577889998885 22344444444 377777778889998888653 57888887765 776644
No 175
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=24.59 E-value=41 Score=25.18 Aligned_cols=31 Identities=19% Similarity=0.421 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhC--------------CCccCHhhHHHHhhhcC
Q 016189 39 EIMQEAIKCMRHAH--------------RTVLTANDVDSALNLRN 69 (393)
Q Consensus 39 ~iiq~a~k~~~hsk--------------R~~Lt~~Di~~Al~~~n 69 (393)
++|+.|++|+.+-+ .|-||.++|+.||+.-+
T Consensus 16 ~li~~Av~FLqdp~V~~sp~~~K~~FL~sKGLt~eEI~~Al~ra~ 60 (70)
T 2w84_A 16 PLIATAVKFLQNSRVRQSPLATRRAFLKKKGLTDEEIDMAFQQSG 60 (70)
T ss_dssp HHHHHHHHHHCSTTGGGSCHHHHHHHHHHTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCChhhhhCCHHHHHHHHHHcCCCHHHHHHHHHHcc
Confidence 46777777776643 25799999999998854
No 176
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=24.13 E-value=1.2e+02 Score=32.02 Aligned_cols=84 Identities=12% Similarity=0.143 Sum_probs=50.8
Q ss_pred HHHHhc-cccCCCCCCc-chHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHhcCCCCCchhHhHHHHHHHhhCHHh
Q 016189 260 ITCLVS-KRLGNRFSDN-HWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSV 337 (393)
Q Consensus 260 ltcll~-k~l~~~~~~~-h~~LR~~AA~lL~~I~~~~~~~y~~L~~Ri~~~l~k~l~d~~~~l~t~YGAi~GL~~lG~~~ 337 (393)
+-|+++ .++|.=.+|. ---+||-||++|+.+ ..-... -++...+.+.+ ........+|++.||..+
T Consensus 223 LLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e-----~~IL~qLV~~l--~~~~WEVRHGGLLGLKYL---- 290 (800)
T 3oc3_A 223 IYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP-----NDIIEQLVGFL--DSGDWQVQFSGLIALGYL---- 290 (800)
T ss_dssp HHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS-----CCHHHHHTTGG--GCSCHHHHHHHHHHHHHT----
T ss_pred HHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCChh-----HHHHHHHHhhc--CCCCeeehhhhHHHHHHH----
Confidence 445544 4454322222 236999999999999 554444 24555555432 356799999999999999
Q ss_pred HHHhcccchHHHHHhhhHhH
Q 016189 338 VHLLILPNLELYLKFLEPEM 357 (393)
Q Consensus 338 vr~~ilP~l~~~~~~l~~~l 357 (393)
..++. .+......+-..|
T Consensus 291 -~DLL~-~Ld~Vv~aVL~GL 308 (800)
T 3oc3_A 291 -KEFVE-DKDGLCRKLVSLL 308 (800)
T ss_dssp -GGGCC-CHHHHHHHHHHHT
T ss_pred -HHHHH-HHHHHHHHHHhhc
Confidence 22222 2555555554444
No 177
>3skq_A Mitochondrial distribution and morphology protein; 14-3-3-like membrane protein, mitochondrial ribosome, respir chain biogenesis; 2.10A {Saccharomyces cerevisiae}
Probab=23.96 E-value=2.6e+02 Score=25.77 Aligned_cols=67 Identities=10% Similarity=0.215 Sum_probs=56.3
Q ss_pred CChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhhcCCCCc
Q 016189 4 VPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPI 73 (393)
Q Consensus 4 ~~~~~i~~iaes~G~~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~~niepl 73 (393)
++..-++.+++-+|+.....+. .|.-.+.+|+++|.++=.-.++.+ =..|+.+++..|...+|+.+.
T Consensus 98 Lsr~qLvaLck~m~L~p~gt~~--~LR~rLr~rl~~I~~DDr~I~~EG-V~sLs~~ELr~AC~~RGm~~~ 164 (249)
T 3skq_A 98 LSRPQLAAMSKFMSLRPFGNDN--MLRYQIRSKLKDIMNDDKTIDYEG-VESLSQEELYQACVSRGMKAY 164 (249)
T ss_dssp SCHHHHHHHHHHTTCCCCSSHH--HHHHHHHHHHHHHHHHHHHHHHHC-GGGSCHHHHHHHHHHTTCCCT
T ss_pred CCHHHHHHHHHHhCCCCCCChH--HHHHHHHHHHHHHHHhhHHHHHhC-cccCCHHHHHHHHHHcCCCCC
Confidence 4667789999999998765443 456688999999999999888886 678999999999999999854
No 178
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.79 E-value=64 Score=32.16 Aligned_cols=42 Identities=24% Similarity=0.165 Sum_probs=34.2
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhh
Q 016189 26 ALALAPDVE----YRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (393)
Q Consensus 26 a~~La~dve----~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~ 67 (393)
...||...+ -.|+.++++|...+.+.+|..++.+|+..|++.
T Consensus 368 l~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 368 LDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYAT 413 (428)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence 455665543 358899999999998889999999999999964
No 179
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=23.28 E-value=86 Score=25.68 Aligned_cols=57 Identities=11% Similarity=0.094 Sum_probs=41.1
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhh
Q 016189 8 TIEVIAQSIGVYNLSSDVALALAPD-------------VEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66 (393)
Q Consensus 8 ~i~~iaes~G~~~ls~~~a~~La~d-------------ve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~ 66 (393)
.+..+.+++|++ . +.+.+.+.+. ...+++++++.|.+.++..+...++++|+=.||-
T Consensus 46 ~~~~iL~~~gv~-~-~~l~~~l~~~l~~~~~~~~~~~~~s~~~~~vL~~A~~~a~~~~~~~i~~eHlLlall 115 (146)
T 3fh2_A 46 VAAKALESMGIS-L-DAVRQEVEEIIGQGSQPTTGHIPFTPRAKKVLELSLREGLQMGHKYIGTEFLLLGLI 115 (146)
T ss_dssp HHHHHHHHTTCC-H-HHHHHHHHHHHCCCSCCCCSCCCBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred hHHHHHHHcCCC-H-HHHHHHHHHHhccCCCCCcCCCcCCHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHH
Confidence 356677777774 1 2222222222 2457899999999999999999999999998883
No 180
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=23.27 E-value=74 Score=28.91 Aligned_cols=54 Identities=17% Similarity=0.121 Sum_probs=38.2
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHh
Q 016189 9 IEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSAL 65 (393)
Q Consensus 9 i~~iaes~G~~~ls~~~a~~La~dve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al 65 (393)
++.+++..|+ .+++++++.|++...-.++++++..-+....+ ..+|.+||..++
T Consensus 178 l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~--~~i~~~~v~~~~ 231 (327)
T 1iqp_A 178 LRYIAENEGL-ELTEEGLQAILYIAEGDMRRAINILQAAAALD--KKITDENVFMVA 231 (327)
T ss_dssp HHHHHHTTTC-EECHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--SEECHHHHHHHT
T ss_pred HHHHHHhcCC-CCCHHHHHHHHHHCCCCHHHHHHHHHHHHhcC--CCCCHHHHHHHH
Confidence 3445556687 49999999999888777777766655444332 378888887765
No 181
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=22.54 E-value=2e+02 Score=28.94 Aligned_cols=98 Identities=14% Similarity=0.264 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHhhcCCchHHHHHHHHhhhhcCCcccchhhHHHHHHHHHhhccCChHHHHHHHHHHHHhhcCCCc--
Q 016189 169 SKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVTRSLKNFSLLFALMRVARSLLRNPHI-- 246 (393)
Q Consensus 169 S~Elq~yf~~It~a~~~~~~~~~~~~aL~sL~tD~gL~~LlPy~~~fi~e~v~~nl~nl~~L~~ll~~v~ALl~N~~l-- 246 (393)
|..+-+|..+|.+.+--.+..+ .+.+++-+.+.++..+.. .+.....+.| .+..|+++
T Consensus 298 s~KevlFL~eleeile~~~~~e--------------f~~i~~~lF~~la~ci~S--~hfqVAErAL----~~w~N~~i~~ 357 (449)
T 2npp_B 298 SPKEVMFLNELEEILDVIEPSE--------------FVKIMEPLFRQLAKCVSS--PHFQVAERAL----YYWNNEYIMS 357 (449)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHH--------------HHHHHHHHHHHHHHHHTC--SCHHHHHHHH----GGGGCHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCHHH--------------HHHHHHHHHHHHHHHHcC--CCHHHHHHHH----HHHCCHHHHH
Q ss_pred ccccchhhhHHHHHHHHhccccCCCCCCcchH--HHHHHHHHHHHHHH
Q 016189 247 HIEPYLHQMMPSVITCLVSKRLGNRFSDNHWD--LRNFVADLIASICT 292 (393)
Q Consensus 247 ~ie~YlHqLlpslltcll~k~l~~~~~~~h~~--LR~~AA~lL~~I~~ 292 (393)
-+..+-+.++|.+..-+ -+.+.+||. +|..|.+++..+.+
T Consensus 358 li~~n~~~IlPii~p~L------~~~s~~HWn~~V~~la~~vlk~l~e 399 (449)
T 2npp_B 358 LISDNAAKILPIMFPSL------YRNSKTHWNKTIHGLIYNALKLFME 399 (449)
T ss_dssp HHHTTHHHHHHHHHHHH------TSCTTCCSSTTHHHHHHHHHHHHHT
T ss_pred HHHhchhhhHHhhHHHH------HHHHHHhcCHHHHHHHHHHHHHHHH
No 182
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=22.51 E-value=1.8e+02 Score=29.75 Aligned_cols=66 Identities=17% Similarity=0.056 Sum_probs=47.3
Q ss_pred CCChHHHHHHHHHcC----CCCCCHHHHHHHHHHHHH-H--------------------HHHHHHHHHHHHHHhCCCccC
Q 016189 3 IVPKETIEVIAQSIG----VYNLSSDVALALAPDVEY-R--------------------VREIMQEAIKCMRHAHRTVLT 57 (393)
Q Consensus 3 ~~~~~~i~~iaes~G----~~~ls~~~a~~La~dve~-r--------------------l~~iiq~a~k~~~hskR~~Lt 57 (393)
+++.+.++.+...+- --.+++++.+.|.+.+.. | +.-+++-|.-.|+-..|..++
T Consensus 393 ~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~ 472 (506)
T 3f8t_A 393 VPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVE 472 (506)
T ss_dssp -CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred CCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCC
Confidence 467777776433222 336999998888765432 2 224677788889999999999
Q ss_pred HhhHHHHhhhc
Q 016189 58 ANDVDSALNLR 68 (393)
Q Consensus 58 ~~Di~~Al~~~ 68 (393)
.+||+.|++..
T Consensus 473 ~eDV~~Ai~L~ 483 (506)
T 3f8t_A 473 PEDVDIAAELV 483 (506)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999876
No 183
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=22.38 E-value=3.2e+02 Score=24.91 Aligned_cols=16 Identities=13% Similarity=0.156 Sum_probs=14.2
Q ss_pred CccCHhhHHHHhhhcC
Q 016189 54 TVLTANDVDSALNLRN 69 (393)
Q Consensus 54 ~~Lt~~Di~~Al~~~n 69 (393)
..+|.+||-.|++.+.
T Consensus 113 ~~IS~dDi~rAik~L~ 128 (234)
T 3cuq_A 113 QDVSQDDLIRAIKKLK 128 (234)
T ss_dssp SSCCHHHHHHHHHHHG
T ss_pred CccCHHHHHHHHHHHH
Confidence 5899999999998874
No 184
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=21.02 E-value=1e+02 Score=25.21 Aligned_cols=35 Identities=14% Similarity=0.099 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhh
Q 016189 33 VEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL 67 (393)
Q Consensus 33 ve~rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~ 67 (393)
...+.+++++.|...++..+...++++|+=.||-.
T Consensus 7 ~t~~~~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~ 41 (146)
T 3fh2_A 7 FTDRARRVIVLAQEEARMLNHNYIGTEHILLGLIH 41 (146)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHh
Confidence 34678899999999999999999999999999843
No 185
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=20.96 E-value=1e+02 Score=24.26 Aligned_cols=57 Identities=18% Similarity=0.065 Sum_probs=38.7
Q ss_pred hHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHhcCCCCCchhHhHHHHHHHh
Q 016189 255 MMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAA 332 (393)
Q Consensus 255 Llpslltcll~k~l~~~~~~~h~~LR~~AA~lL~~I~~~~~~~y~~L~~Ri~~~l~k~l~d~~~~l~t~YGAi~GL~~ 332 (393)
.+|.++.++ .+.+|.+|..|+..|+.+.. ++....|.+.+.|+ ......-|+.+|..
T Consensus 74 a~~~L~~~L---------~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~--~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 74 AVEPLIKLL---------EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETG--TGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHH---------HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSC--CTHHHHHHHHHGGG
T ss_pred HHHHHHHHH---------cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCC--CHHHHHHHHHHHHh
Confidence 456666665 14678999999999998752 35666777777653 44566667666643
No 186
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=20.90 E-value=36 Score=35.30 Aligned_cols=49 Identities=12% Similarity=0.200 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHhCCCccCHhhHHHHhhhc
Q 016189 20 NLSSDVALALAPDVEY------------------RVREIMQEAIKCMRHAHRTVLTANDVDSALNLR 68 (393)
Q Consensus 20 ~ls~~~a~~La~dve~------------------rl~~iiq~a~k~~~hskR~~Lt~~Di~~Al~~~ 68 (393)
.+++++.+.|.+.... .+..+++-|.-.++-..|..++.+||..|++.+
T Consensus 521 ~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~ 587 (595)
T 3f9v_A 521 KITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIM 587 (595)
T ss_dssp CCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHH
Confidence 6888888888776321 267888999999999999999999999999764
No 187
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=20.58 E-value=2e+02 Score=24.04 Aligned_cols=94 Identities=13% Similarity=0.040 Sum_probs=56.9
Q ss_pred HHHHHHHHHH-cCCCchhhHHHHHHHHHHHhcCCCCCchhHhHHHHHHHhh---CHHhHHHhcccchHHHHHhhhHhHhh
Q 016189 284 ADLIASICTR-FGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAAL---GPSVVHLLILPNLELYLKFLEPEMLL 359 (393)
Q Consensus 284 A~lL~~I~~~-~~~~y~~L~~Ri~~~l~k~l~d~~~~l~t~YGAi~GL~~l---G~~~vr~~ilP~l~~~~~~l~~~l~~ 359 (393)
+.++..|++- |.. ....-..|+..|.+-|.+ ++....|=|+.-|..| |++-+..-+--|+..+-...+-.-.+
T Consensus 29 gylm~EIA~~T~~s-~~~~~~eim~~L~kRL~~--k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~ 105 (140)
T 1vdy_A 29 VYKLEEICDLLRSS-HVSIVKEFSEFILKRLDN--KSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHP 105 (140)
T ss_dssp HHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHTS--SSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCC
T ss_pred HHHHHHHHHHHHhc-chhHHHHHHHHHHHHhcC--CCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCC
Confidence 3445555543 221 123346788889898875 4567899999998877 77776666555554332222111111
Q ss_pred h----hhhhhhHHHHHHHHHhHhhh
Q 016189 360 E----KQKNEMKRHEAWRVYGALQV 380 (393)
Q Consensus 360 ~----~~~~~~~~~~a~~v~~~l~~ 380 (393)
+ +.....+|..|..+..+|..
T Consensus 106 dp~~G~d~g~~VR~~AkEl~~ll~d 130 (140)
T 1vdy_A 106 DPLKGDALNKAVRETAHETISAIFS 130 (140)
T ss_dssp CTTTSSCHHHHHHHHHHHHHHHHTC
T ss_pred CcccccchhHHHHHHHHHHHHHHhC
Confidence 1 23446789999999888864
No 188
>1u9p_A PARC; unknown function; 1.90A {Escherichia coli} SCOP: a.43.1.1
Probab=20.56 E-value=1.2e+02 Score=24.89 Aligned_cols=47 Identities=15% Similarity=0.249 Sum_probs=39.0
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhCCC
Q 016189 7 ETIEVIAQSIGVYNLSSDVALALAPDVEYRVR-----------EIMQEAIKCMRHAHRT 54 (393)
Q Consensus 7 ~~i~~iaes~G~~~ls~~~a~~La~dve~rl~-----------~iiq~a~k~~~hskR~ 54 (393)
+.|...|+.-|. +++.++...|.+.++..-. ++.+++.++++..+|.
T Consensus 31 ~~La~~Ak~eGr-SLN~eIv~~Le~sl~~~~~~~~~~~s~~~~~l~~~ir~~a~~~~~s 88 (120)
T 1u9p_A 31 DLVRKVAEENGR-SVNSEIYQRVMESFKKEGRIGGTGGSGGGREVLDLVRKVAEENGRS 88 (120)
T ss_dssp HHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTSCCC-----CSHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHhcccCCcccccccccchHHHHHHHHHHHHHHhh
Confidence 457778999999 5999999999999877654 8888888888888764
No 189
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=20.31 E-value=1e+02 Score=22.45 Aligned_cols=46 Identities=20% Similarity=0.205 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCccCHhhHHHHhhhc
Q 016189 22 SSDVALALAPDVEYRVREIMQEA-IKCMRHAHRTVLTANDVDSALNLR 68 (393)
Q Consensus 22 s~~~a~~La~dve~rl~~iiq~a-~k~~~hskR~~Lt~~Di~~Al~~~ 68 (393)
++||-..|.. |=+++|.-++.. =+|++..+.+.+|.+.+..|=...
T Consensus 7 t~EAe~~Lkk-IP~FVR~kvrr~tE~~Are~G~~~IT~ev~~~AK~~~ 53 (63)
T 2kru_A 7 TAEAEKMLGK-VPFFVRKKVRKNTDNYAREIGEPVVTADVFRKAKEHL 53 (63)
T ss_dssp CHHHHHHHTT-SCHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHH
T ss_pred CHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHHHh
Confidence 5566665554 556666655544 489999999999999998886554
No 190
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=20.25 E-value=58 Score=30.40 Aligned_cols=38 Identities=11% Similarity=0.018 Sum_probs=25.1
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 016189 12 IAQSIGVYNLSSDVALALAPDVEY----RVREIMQEAIKCMRH 50 (393)
Q Consensus 12 iaes~G~~~ls~~~a~~La~dve~----rl~~iiq~a~k~~~h 50 (393)
.++..+. .++++....||+..+- .|+.++++|...+.+
T Consensus 196 ~~~~~~~-~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r 237 (322)
T 3eie_A 196 NVGDTPC-VLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIR 237 (322)
T ss_dssp HHTTCCC-CCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHH
T ss_pred HhccCCC-CCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 3333344 4788888888887653 577888888655544
Done!