Query 016190
Match_columns 393
No_of_seqs 116 out of 184
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 09:25:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016190.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016190hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpp_A IWS1, ECU08_0440; trans 100.0 1.3E-49 4.4E-54 351.3 13.2 136 252-393 1-136 (145)
2 3nfq_A Transcription factor IW 100.0 1.1E-46 3.7E-51 340.4 15.7 142 246-393 2-151 (170)
3 1wjt_A Transcription elongatio 97.8 1.1E-05 3.8E-10 67.5 3.4 49 337-392 35-83 (103)
4 1pqv_S STP-alpha, transcriptio 97.3 0.00018 6.3E-09 69.6 4.9 48 337-392 25-73 (309)
5 1juq_A ADP-ribosylation factor 66.4 44 0.0015 29.4 10.1 60 285-345 67-126 (171)
6 2kkm_A Translation machinery-a 60.2 22 0.00075 30.9 6.8 78 250-332 43-124 (144)
7 3tpo_A Importin subunit alpha- 50.3 34 0.0012 33.6 7.2 78 304-391 412-495 (529)
8 4b8j_A Importin subunit alpha- 49.5 1.1E+02 0.0037 29.4 10.4 81 303-391 405-494 (528)
9 4hxt_A De novo protein OR329; 48.9 1.1E+02 0.0039 25.3 9.6 78 303-390 35-112 (252)
10 4db6_A Armadillo repeat protei 46.8 76 0.0026 26.1 7.9 80 303-392 129-208 (210)
11 3ul1_B Importin subunit alpha- 44.3 82 0.0028 30.9 8.8 78 304-391 393-476 (510)
12 1jdh_A Beta-catenin; beta-cate 37.7 1.8E+02 0.0061 27.4 9.7 81 300-391 448-528 (529)
13 1mhq_A ADP-ribosylation factor 36.9 2E+02 0.0068 24.6 10.3 60 285-345 55-114 (148)
14 4db8_A Armadillo-repeat protei 35.5 2E+02 0.0068 24.2 10.1 78 301-389 85-163 (252)
15 4hxt_A De novo protein OR329; 29.8 2.4E+02 0.0081 23.3 9.7 79 302-390 76-154 (252)
16 3g2s_A C-terminal fragment of 28.9 1.1E+02 0.0037 26.4 6.1 60 285-345 65-124 (149)
17 3eg5_B Protein diaphanous homo 26.6 52 0.0018 32.3 4.1 54 291-345 87-147 (383)
18 4db8_A Armadillo-repeat protei 26.1 2.9E+02 0.0099 23.1 9.8 75 305-389 47-121 (252)
19 2z6h_A Catenin beta-1, beta-ca 24.7 2.4E+02 0.0081 28.2 8.6 75 302-387 447-521 (644)
20 3qml_C Protein SLS1, nucleotid 23.1 2.1E+02 0.0073 28.1 7.6 74 306-390 113-186 (315)
21 2kt7_A Putative peptidoglycan 21.4 54 0.0019 27.2 2.7 28 8-35 73-100 (102)
22 4db6_A Armadillo repeat protei 20.5 3.5E+02 0.012 22.0 10.2 78 302-389 44-121 (210)
No 1
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=100.00 E-value=1.3e-49 Score=351.32 Aligned_cols=136 Identities=35% Similarity=0.645 Sum_probs=131.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHhhhHHHHHHHhhHHHHHHHHhhhhHHHHHHhhccCCCCCCCC
Q 016190 252 KSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPN 331 (393)
Q Consensus 252 ~s~~Ei~~iv~~Li~~M~~AAeeD~eank~gkPAl~KLkmLpeV~~~L~K~~Lq~~fLD~GiL~vLk~WLePLPDgSLPn 331 (393)
++++||.++|.+|+.+|..||++|+++|++++|||+||+||++|+.+|+|.+||.+||++|+|++|+.||+|||||||||
T Consensus 1 ~~~~e~~~~~~~l~~~M~~Aa~~D~~a~~~~~PA~~KlklL~~V~~~l~k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~ 80 (145)
T 2xpp_A 1 MDPGTVLEISRSLKKRMQDILKKDNANNLEGRPATGKIENVEEISDILMSKALQESLLDEGILDEIKGWLEPLPDKSMPN 80 (145)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHTCTTTHHHHHHTTHHHHHHHHHSCCTTSCCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHhhHHHHHHHHhhHHHHHHHHHcCHHHHHHHHhCcCCCCCCCC
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCccccchHHHHhhcCcchhhHhhhcCchhcHHHHHHHHHHHHhhcC
Q 016190 332 INIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWVM 393 (393)
Q Consensus 332 l~IRt~LLkiL~~LPId~e~~d~rE~LK~SGLGKVVmfL~K~p~ET~eNKrlA~~LI~kWSR 393 (393)
++||+.||++|.+|||++ +||++||||||||||++||+||++||++|++||++|||
T Consensus 81 ~~Ir~~lL~~L~~lPI~~------e~Lk~SglGkvv~~l~k~~~et~~nk~la~~Li~~WsR 136 (145)
T 2xpp_A 81 IKIRKRLLDVLKTMKIHK------EHLVTSGVGKIVYFYSINPKESKEVRASAKALVQKWTN 136 (145)
T ss_dssp HHHHHHHHHHHHTSCCCH------HHHHHHCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCH------HHhhcCCCCcchhhhhcCCccCHHHHHHHHHHHHHHHH
Confidence 999999999999999964 79999999999999999999999999999999999997
No 2
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=100.00 E-value=1.1e-46 Score=340.42 Aligned_cols=142 Identities=32% Similarity=0.614 Sum_probs=128.2
Q ss_pred cccccCCCH-HHHHHHHHHHHHHHHHHHHHHHHH-Hh------cCChHHHHHhhhHHHHHHHhhHHHHHHHHhhhhHHHH
Q 016190 246 KRKKNEKSP-AEIALLVENVMAELEVTAEEDAEL-NR------QGKPAINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLL 317 (393)
Q Consensus 246 kKKk~~~s~-~Ei~~iv~~Li~~M~~AAeeD~ea-nk------~gkPAl~KLkmLpeV~~~L~K~~Lq~~fLD~GiL~vL 317 (393)
+||+.+.+. ...++.|.+|+.+|..||++|.++ |+ +++|||+||+|||+|+.+|+|.+||.+||++|||++|
T Consensus 2 r~~~~~~dl~~~~Dd~i~~L~~~M~~Aa~~D~~~~n~~~~~~~~~~PAl~KLkmL~~V~~~L~k~~L~~~~ld~giL~~l 81 (170)
T 3nfq_A 2 RTRRDEDDLEQYLDEKILRLKDEMNIAAQLDIDTLNKRIETGDTSLIAMQKVKLLPKVVSVLSKANLADTILDNNLLQSV 81 (170)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHTCGGGHHHHHHTTHHHHH
T ss_pred CccchhhhHHHhhhHHHHHHHHHHHHHHHHhHHHHHhhhccccccccHHHHHhhHHHHHHHHhHHHHHHHHHHcchHHHH
Confidence 345555555 455679999999999999999875 43 5799999999999999999999999999999999999
Q ss_pred HHhhccCCCCCCCCHHHHHHHHHHHhcCCCCccccchHHHHhhcCcchhhHhhhcCchhcHHHHHHHHHHHHhhcC
Q 016190 318 KNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWVM 393 (393)
Q Consensus 318 k~WLePLPDgSLPnl~IRt~LLkiL~~LPId~e~~d~rE~LK~SGLGKVVmfL~K~p~ET~eNKrlA~~LI~kWSR 393 (393)
+.||+||||||||||+||+.||++|.+|||++ +||++||||||||||++||+||++||++|.+||++|||
T Consensus 82 ~~WLePLpDgSLP~~~Ir~~lL~~L~~lPI~~------e~Lk~SglGkvV~~l~k~~~et~~nkrla~~Li~~WsR 151 (170)
T 3nfq_A 82 RIWLEPLPDGSLPSFEIQKSLFAALNDLPVKT------EHLKESGLGRVVIFYTKSKRVEAQLARLAEKLIAEWTR 151 (170)
T ss_dssp HHHHSCCTTSCCCCHHHHHHHHHHHHTSCCCH------HHHHHHSHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTC
T ss_pred HHHhCcCCCCCCCcHHHHHHHHHHHHHCCCCH------HHHhhCCCCceeeehhcCCcccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999964 79999999999999999999999999999999999998
No 3
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=97.78 E-value=1.1e-05 Score=67.47 Aligned_cols=49 Identities=22% Similarity=0.323 Sum_probs=42.7
Q ss_pred HHHHHHhcCCCCccccchHHHHhhcCcchhhHhhhcCchhcHHHHHHHHHHHHhhc
Q 016190 337 AILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWV 392 (393)
Q Consensus 337 ~LLkiL~~LPId~e~~d~rE~LK~SGLGKVVmfL~K~p~ET~eNKrlA~~LI~kWS 392 (393)
.+|+.|..|||+ .+.|++++||++|..|+|| ...++++.+|+.||.+|.
T Consensus 35 ~~L~~L~~~~iT------~e~L~~T~IGk~Vn~LrKh-~~~~~V~~lAk~Lv~~WK 83 (103)
T 1wjt_A 35 DLLKKLNSCQMS------IQLLQTTRIGVAVNGVRKH-CSDKEVVSLAKVLIKNWK 83 (103)
T ss_dssp HHHHHHHTSCCC------HHHHHHTCHHHHHHHHHHH-CCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCC------HHHHHHcchhHHHHHHHcc-CCcHHHHHHHHHHHHHHH
Confidence 578888999985 4799999999999999998 244688999999999995
No 4
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=97.29 E-value=0.00018 Score=69.60 Aligned_cols=48 Identities=27% Similarity=0.472 Sum_probs=40.2
Q ss_pred HHHHHH-hcCCCCccccchHHHHhhcCcchhhHhhhcCchhcHHHHHHHHHHHHhhc
Q 016190 337 AILKIL-TEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAKDLVDKWV 392 (393)
Q Consensus 337 ~LLkiL-~~LPId~e~~d~rE~LK~SGLGKVVmfL~K~p~ET~eNKrlA~~LI~kWS 392 (393)
.+|+.| ..+||. .+.|+.++||++|..|.|| ..++++.+|+.||.+|.
T Consensus 25 ~~L~~L~~~~~it------~~~L~~T~IG~~Vn~lrkh--~~~~v~~~Ak~Li~~WK 73 (309)
T 1pqv_S 25 EILHVLDKEFVPT------EKLLRETKVGVEVNKFKKS--TNVEISKLVKKMISSWK 73 (309)
T ss_pred HHHHHHHhcCCCC------HHHHHhCChhHHHHHHHcC--CCHHHHHHHHHHHHHHH
Confidence 455555 556985 4799999999999999999 45589999999999995
No 5
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=66.43 E-value=44 Score=29.39 Aligned_cols=60 Identities=15% Similarity=0.222 Sum_probs=47.5
Q ss_pred HHHHHhhhHHHHHHHhhHHHHHHHHhhhhHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcC
Q 016190 285 AINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEF 345 (393)
Q Consensus 285 Al~KLkmLpeV~~~L~K~~Lq~~fLD~GiL~vLk~WLePLPDgSLPnl~IRt~LLkiL~~L 345 (393)
++.-|.+|+.++.-|- ..+|..+-...+|+.|...+.|-++++-.+..||+.+|.+|...
T Consensus 67 ql~AL~LLd~~vkNCG-~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 126 (171)
T 1juq_A 67 ALQALTVLEACMKNCG-RRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSW 126 (171)
T ss_dssp HHHHHHHHHHHHHHSH-HHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-HHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH
Confidence 4555666666655433 46788888999999999999988888888899999999999865
No 6
>2kkm_A Translation machinery-associated protein 16; nucleus, structural genomics, PSI-2, protein structure initiative; NMR {Saccharomyces cerevisiae}
Probab=60.19 E-value=22 Score=30.94 Aligned_cols=78 Identities=15% Similarity=0.227 Sum_probs=54.5
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHhhhHHHHHHHhhHHH----HHHHHhhhhHHHHHHhhccCC
Q 016190 250 NEKSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLTEVLSKKQL----QQEFLDHGVLTLLKNWLEPLP 325 (393)
Q Consensus 250 ~~~s~~Ei~~iv~~Li~~M~~AAeeD~eank~gkPAl~KLkmLpeV~~~L~K~~L----q~~fLD~GiL~vLk~WLePLP 325 (393)
...+.+|+..+|...|.+-..=.++=....+.|+|+.++..+|...+....+..= .+-|.+..-+..|+.|
T Consensus 43 ~~~t~~e~~~lI~~yl~R~d~ELeql~~~rR~gRp~s~Re~~L~~~~~~E~~ey~tG~~iPDLtd~~nvk~Lr~W----- 117 (144)
T 2kkm_A 43 PIFDHAHTREFIQSFIERDDTELDELKKKRRSNRPPSNRQVLLQQRRDQELKEFKAGFLCPDLSDAKNMEFLRNW----- 117 (144)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCCTTHHHHHHHHHHHHHHHHHTTEEEECSCCHHHHHHHHTC-----
T ss_pred CCCCHHHHHHHHHHHHhcCcHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHHccCccCCCCCCHHHHHHHHHc-----
Confidence 4588999999999988876555444344567899999999999887776543321 1114455668889999
Q ss_pred CCCCCCH
Q 016190 326 DGSLPNI 332 (393)
Q Consensus 326 DgSLPnl 332 (393)
||++-.+
T Consensus 118 ~G~~~~l 124 (144)
T 2kkm_A 118 NGTFGLL 124 (144)
T ss_dssp SSCSTHH
T ss_pred CCChhcC
Confidence 6775544
No 7
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=50.30 E-value=34 Score=33.60 Aligned_cols=78 Identities=19% Similarity=0.260 Sum_probs=58.1
Q ss_pred HHHHHHhhhhHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcCC-----C-CccccchHHHHhhcCcchhhHhhhcCchhc
Q 016190 304 LQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFP-----I-DLEQFDRREQLKKSGLGKVIMFLSKSDEET 377 (393)
Q Consensus 304 Lq~~fLD~GiL~vLk~WLePLPDgSLPnl~IRt~LLkiL~~LP-----I-d~e~~d~rE~LK~SGLGKVVmfL~K~p~ET 377 (393)
....|+++|++..|..-|. -++-.|+..+|.+|.++= + ..+. -+..+.++|.=..|..|..|+ .
T Consensus 412 ~~~~l~~~g~i~~L~~LL~------~~d~~i~~~~L~aL~nil~~~~~~~~~~~--~~~~iee~ggl~~ie~Lq~~~--n 481 (529)
T 3tpo_A 412 QIVYLVHCGIIEPLMNLLS------AKDTKIIQVILDAISNIFQAAEKLGETEK--LSIMIEECGGLDKIEALQRHE--N 481 (529)
T ss_dssp HHHHHHHTTCHHHHHHGGG------CSCHHHHHHHHHHHHHHHHHHHTTTCHHH--HHHHHHHTTCHHHHTGGGGCS--S
T ss_pred HHHHHHHCcCHHHHHHHhc------CCCHHHHHHHHHHHHHHHHHhHhccChHH--HHHHHHHCCcHHHHHHHHcCC--C
Confidence 3456889999999998885 357789998888887762 1 1111 134577888888888898886 5
Q ss_pred HHHHHHHHHHHHhh
Q 016190 378 TSNRKLAKDLVDKW 391 (393)
Q Consensus 378 ~eNKrlA~~LI~kW 391 (393)
.++..+|..||+++
T Consensus 482 ~~i~~~A~~iie~y 495 (529)
T 3tpo_A 482 ESVYKASLNLIEKY 495 (529)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 57899999999986
No 8
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=49.51 E-value=1.1e+02 Score=29.45 Aligned_cols=81 Identities=16% Similarity=0.107 Sum_probs=56.5
Q ss_pred HHHHHHHhhhhHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcCCCCccc---------cchHHHHhhcCcchhhHhhhcC
Q 016190 303 QLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQ---------FDRREQLKKSGLGKVIMFLSKS 373 (393)
Q Consensus 303 ~Lq~~fLD~GiL~vLk~WLePLPDgSLPnl~IRt~LLkiL~~LPId~e~---------~d~rE~LK~SGLGKVVmfL~K~ 373 (393)
.....|++.|++..|-.=|.- ++..|+...+.+|.+|=-..+. ..-...|.++|.-..+..|..|
T Consensus 405 ~~~~~l~~~~~i~~L~~lL~~------~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~ 478 (528)
T 4b8j_A 405 DQIKYLVSEGCIKPLCDLLIC------PDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSH 478 (528)
T ss_dssp HHHHHHHHTTCHHHHHHGGGC------SCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGC
T ss_pred HHHHHHHHCCCHHHHHHHHcC------CCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcC
Confidence 444556677887777776643 5678999999998887210000 0024678888877888888887
Q ss_pred chhcHHHHHHHHHHHHhh
Q 016190 374 DEETTSNRKLAKDLVDKW 391 (393)
Q Consensus 374 p~ET~eNKrlA~~LI~kW 391 (393)
+ ..+++..|..|+++.
T Consensus 479 ~--~~~v~~~a~~il~~~ 494 (528)
T 4b8j_A 479 D--NNEIYEKAVKILEAY 494 (528)
T ss_dssp S--SHHHHHHHHHHHHHH
T ss_pred C--CHHHHHHHHHHHHHH
Confidence 6 457899999999874
No 9
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=48.91 E-value=1.1e+02 Score=25.29 Aligned_cols=78 Identities=14% Similarity=0.199 Sum_probs=57.0
Q ss_pred HHHHHHHhhhhHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcCCCCccccchHHHHhhcCcchhhHhhhcCchhcHHHHH
Q 016190 303 QLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRK 382 (393)
Q Consensus 303 ~Lq~~fLD~GiL~vLk~WLePLPDgSLPnl~IRt~LLkiL~~LPId~e~~d~rE~LK~SGLGKVVmfL~K~p~ET~eNKr 382 (393)
.....|++.|++..|-..|.- ++..+|...+.+|.+|-.... ..+..+..+|+-..++-+-+++ .+.++.
T Consensus 35 ~~~~~~~~~g~i~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~~i~~l~~ll~~~--~~~v~~ 104 (252)
T 4hxt_A 35 SAIKAIVDAGGVEVLVKLLTS------TDSEVQKEAARALANIASGPD--EAIKAIVDAGGVEVLVKLLTST--DSEVQK 104 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTC------SCHHHHHHHHHHHHHHTTSCH--HHHHHHHHTTHHHHHHHHTTCS--SHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhC------CCHHHHHHHHHHHHHHHcCCh--HHHHHHHHCCCHHHHHHHHcCC--CHHHHH
Confidence 367788999999999998874 568999999999999976522 2467777777666666555543 467777
Q ss_pred HHHHHHHh
Q 016190 383 LAKDLVDK 390 (393)
Q Consensus 383 lA~~LI~k 390 (393)
.|-.++..
T Consensus 105 ~a~~~L~~ 112 (252)
T 4hxt_A 105 EAARALAN 112 (252)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666544
No 10
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=46.83 E-value=76 Score=26.09 Aligned_cols=80 Identities=23% Similarity=0.290 Sum_probs=59.2
Q ss_pred HHHHHHHhhhhHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcCCCCccccchHHHHhhcCcchhhHhhhcCchhcHHHHH
Q 016190 303 QLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRK 382 (393)
Q Consensus 303 ~Lq~~fLD~GiL~vLk~WLePLPDgSLPnl~IRt~LLkiL~~LPId~e~~d~rE~LK~SGLGKVVmfL~K~p~ET~eNKr 382 (393)
.....+++.|++..|-.-|.- ++..+|...+.+|.+|-.... ..+..+.+.|+-..++.+-.+ ..+.+++
T Consensus 129 ~~~~~~~~~~~i~~L~~ll~~------~~~~v~~~a~~aL~~l~~~~~--~~~~~~~~~g~i~~L~~ll~~--~~~~v~~ 198 (210)
T 4db6_A 129 EQIQAVIDAGALPALVQLLSS------PNEQILQEALWALSNIASGGN--EQKQAVKEAGALEKLEQLQSH--ENEKIQK 198 (210)
T ss_dssp HHHHHHHHTTHHHHHHHHTTC------SCHHHHHHHHHHHHHHHTSCH--HHHHHHHHTTHHHHHHHGGGC--SCHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHcC------CCHHHHHHHHHHHHHHHcCCc--HHHHHHHHCCCHHHHHHHHhC--CCHHHHH
Confidence 344568889999999988863 578999999999999854321 236678788876666666655 5678888
Q ss_pred HHHHHHHhhc
Q 016190 383 LAKDLVDKWV 392 (393)
Q Consensus 383 lA~~LI~kWS 392 (393)
.|-.++...+
T Consensus 199 ~a~~aL~~l~ 208 (210)
T 4db6_A 199 EAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHh
Confidence 8888876643
No 11
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=44.30 E-value=82 Score=30.85 Aligned_cols=78 Identities=21% Similarity=0.278 Sum_probs=58.0
Q ss_pred HHHHHHhhhhHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcCC-----C-CccccchHHHHhhcCcchhhHhhhcCchhc
Q 016190 304 LQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFP-----I-DLEQFDRREQLKKSGLGKVIMFLSKSDEET 377 (393)
Q Consensus 304 Lq~~fLD~GiL~vLk~WLePLPDgSLPnl~IRt~LLkiL~~LP-----I-d~e~~d~rE~LK~SGLGKVVmfL~K~p~ET 377 (393)
....|+++|++..|..-|. -++..|+..+|.+|.++= + ..+. -+..+.++|.=..|-.|..|+.+
T Consensus 393 ~~~~L~~~g~i~~L~~LL~------~~d~~i~~~~L~aL~nil~~~~~~~~~~~--~~~~iee~ggl~~ie~Lq~~~n~- 463 (510)
T 3ul1_B 393 QIVYLVHCGIIEPLMNLLS------AKDTKIIQVILDAISNIFQAAEKLGETEK--LSIMIEECGGLDKIEALQRHENE- 463 (510)
T ss_dssp HHHHHHHTTCHHHHHHGGG------CSCHHHHHHHHHHHHHHHHHHHTTTCHHH--HHHHHHHTTHHHHHHHGGGCSSH-
T ss_pred HHHHHHHCCCHHHHHHHhc------CCCHHHHHHHHHHHHHHHHHhHhccchHH--HHHHHHHcCcHHHHHHHHcCCCH-
Confidence 3456889999999998885 357789999988887651 1 1111 13457788888889999888654
Q ss_pred HHHHHHHHHHHHhh
Q 016190 378 TSNRKLAKDLVDKW 391 (393)
Q Consensus 378 ~eNKrlA~~LI~kW 391 (393)
++.++|..||+++
T Consensus 464 -~i~~~A~~iie~y 476 (510)
T 3ul1_B 464 -SVYKASLNLIEKY 476 (510)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHH
Confidence 6889999999986
No 12
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=37.67 E-value=1.8e+02 Score=27.38 Aligned_cols=81 Identities=17% Similarity=0.153 Sum_probs=61.3
Q ss_pred hhHHHHHHHHhhhhHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcCCCCccccchHHHHhhcCcchhhHhhhcCchhcHH
Q 016190 300 SKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTS 379 (393)
Q Consensus 300 ~K~~Lq~~fLD~GiL~vLk~WLePLPDgSLPnl~IRt~LLkiL~~LPId~e~~d~rE~LK~SGLGKVVmfL~K~p~ET~e 379 (393)
.-...+..|.+.|++..|-.-|.- ++.+||+....+|.+|--+.. .+..+.++|.-..++.|..|+ .++
T Consensus 448 ~~~~~~~~l~~~~~v~~l~~ll~~------~~~~v~~~a~~~l~~l~~~~~---~~~~i~~~~~~~~L~~l~~~~--~~~ 516 (529)
T 1jdh_A 448 RDVHNRIVIRGLNTIPLFVQLLYS------PIENIQRVAAGVLCELAQDKE---AAEAIEAEGATAPLTELLHSR--NEG 516 (529)
T ss_dssp TSHHHHHHHHHTTCHHHHHHGGGC------SCHHHHHHHHHHHHHHTTSHH---HHHHHHHTTCHHHHHHGGGCS--SHH
T ss_pred cCchHHHHHhccCCccHHHHHHcC------CchHHHHHHHHHHHHHhcCHH---HHHHHHHcCChHHHHHHhcCC--CHH
Confidence 345556778899999888877752 467899999999998864322 367888888888888888765 667
Q ss_pred HHHHHHHHHHhh
Q 016190 380 NRKLAKDLVDKW 391 (393)
Q Consensus 380 NKrlA~~LI~kW 391 (393)
++..|..++.+-
T Consensus 517 v~~~a~~aL~~l 528 (529)
T 1jdh_A 517 VATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 888888887753
No 13
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=36.88 E-value=2e+02 Score=24.58 Aligned_cols=60 Identities=20% Similarity=0.272 Sum_probs=44.0
Q ss_pred HHHHHhhhHHHHHHHhhHHHHHHHHhhhhHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcC
Q 016190 285 AINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEF 345 (393)
Q Consensus 285 Al~KLkmLpeV~~~L~K~~Lq~~fLD~GiL~vLk~WLePLPDgSLPnl~IRt~LLkiL~~L 345 (393)
++.-|.+|+.++.-+- ..+|..+-...+|+.|...+.|=-+++-++..||+.+|.+|...
T Consensus 55 ql~AL~LLe~~vkNCG-~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (148)
T 1mhq_A 55 ALYALTVLEMCMNHCG-EKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSW 114 (148)
T ss_dssp HHHHHHHHHHHHHHSC-HHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-HHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHH
Confidence 3445555555554432 47888888999999999988874445557789999999999865
No 14
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=35.45 E-value=2e+02 Score=24.18 Aligned_cols=78 Identities=19% Similarity=0.161 Sum_probs=56.1
Q ss_pred hHHHHHHHHhhhhHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcCCCCccccchH-HHHhhcCcchhhHhhhcCchhcHH
Q 016190 301 KKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRR-EQLKKSGLGKVIMFLSKSDEETTS 379 (393)
Q Consensus 301 K~~Lq~~fLD~GiL~vLk~WLePLPDgSLPnl~IRt~LLkiL~~LPId~e~~d~r-E~LK~SGLGKVVmfL~K~p~ET~e 379 (393)
....+..+++.|++..|-.-|.- |+..||...+.+|.+|-.... .+ ..+..+|+=..++-+-+++ .+.
T Consensus 85 ~~~~~~~i~~~g~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~---~~~~~~~~~~~i~~L~~lL~~~--~~~ 153 (252)
T 4db8_A 85 GNEQIQAVIDAGALPALVQLLSS------PNEQILQEALWALSNIASGGN---EQIQAVIDAGALPALVQLLSSP--NEQ 153 (252)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGC------SCHHHHHHHHHHHHHHTTSCH---HHHHHHHHTTHHHHHHHGGGCS--CHH
T ss_pred CHHHHHHHHHcCCHHHHHHHHcC------CCHHHHHHHHHHHHHhhcCCc---hHHHHHHHCCCHHHHHHHHhCC--CHH
Confidence 36677889999999999998864 678999999999999965432 23 5677776666666555554 456
Q ss_pred HHHHHHHHHH
Q 016190 380 NRKLAKDLVD 389 (393)
Q Consensus 380 NKrlA~~LI~ 389 (393)
++..|-..+.
T Consensus 154 v~~~a~~~L~ 163 (252)
T 4db8_A 154 ILQEALWALS 163 (252)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666655554
No 15
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=29.85 E-value=2.4e+02 Score=23.32 Aligned_cols=79 Identities=14% Similarity=0.217 Sum_probs=56.2
Q ss_pred HHHHHHHHhhhhHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcCCCCccccchHHHHhhcCcchhhHhhhcCchhcHHHH
Q 016190 302 KQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNR 381 (393)
Q Consensus 302 ~~Lq~~fLD~GiL~vLk~WLePLPDgSLPnl~IRt~LLkiL~~LPId~e~~d~rE~LK~SGLGKVVmfL~K~p~ET~eNK 381 (393)
...+..+++.|++..|-.-|.. ++..+|...+.+|.+|-.... ..+..+...|+-..++-+-+++. +.++
T Consensus 76 ~~~~~~~~~~~~i~~l~~ll~~------~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~~i~~L~~~l~~~~--~~~~ 145 (252)
T 4hxt_A 76 DEAIKAIVDAGGVEVLVKLLTS------TDSEVQKEAARALANIASGPD--EAIKAIVDAGGVEVLVKLLTSTD--SEVQ 145 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTC------SSHHHHHHHHHHHHHHTTSCH--HHHHHHHHTTHHHHHHHHTTCSC--HHHH
T ss_pred hHHHHHHHHCCCHHHHHHHHcC------CCHHHHHHHHHHHHHHHcCCH--HHHHHHHHCCCHHHHHHHHcCCC--HHHH
Confidence 6778889999999999888872 678999999999999974321 23566777776666665555543 5566
Q ss_pred HHHHHHHHh
Q 016190 382 KLAKDLVDK 390 (393)
Q Consensus 382 rlA~~LI~k 390 (393)
..|-..+..
T Consensus 146 ~~a~~~L~~ 154 (252)
T 4hxt_A 146 KEAARALAN 154 (252)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666555543
No 16
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=28.89 E-value=1.1e+02 Score=26.43 Aligned_cols=60 Identities=23% Similarity=0.257 Sum_probs=42.3
Q ss_pred HHHHHhhhHHHHHHHhhHHHHHHHHhhhhHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcC
Q 016190 285 AINKLKKLSLLTEVLSKKQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEF 345 (393)
Q Consensus 285 Al~KLkmLpeV~~~L~K~~Lq~~fLD~GiL~vLk~WLePLPDgSLPnl~IRt~LLkiL~~L 345 (393)
++.-|.+|..++.-+ -..+|..+-...+|+.|..-+.|=-+++-++..||+.+|.+|...
T Consensus 65 ~l~AL~LLe~cvkNC-G~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 124 (149)
T 3g2s_A 65 AIQALTVLETCMKSC-GKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSW 124 (149)
T ss_dssp HHHHHHHHHHHHHHC-CHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-CHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHH
Confidence 444555555555443 245677788888888888888764345567889999999999765
No 17
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=26.65 E-value=52 Score=32.26 Aligned_cols=54 Identities=24% Similarity=0.190 Sum_probs=39.2
Q ss_pred hhHHHHHHHhh--HHHHHHHHhhhhHHHHHHhhccCCCCC-----CCCHHHHHHHHHHHhcC
Q 016190 291 KLSLLTEVLSK--KQLQQEFLDHGVLTLLKNWLEPLPDGS-----LPNINIRAAILKILTEF 345 (393)
Q Consensus 291 mLpeV~~~L~K--~~Lq~~fLD~GiL~vLk~WLePLPDgS-----LPnl~IRt~LLkiL~~L 345 (393)
.|..+.-.|+. ..|...|+ ++.+.+|..+|.-+.... -....++..+++||..+
T Consensus 87 ~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal 147 (383)
T 3eg5_B 87 CLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF 147 (383)
T ss_dssp HHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence 45555555654 58889998 778899999998764333 23578999999999877
No 18
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=26.14 E-value=2.9e+02 Score=23.15 Aligned_cols=75 Identities=20% Similarity=0.168 Sum_probs=53.4
Q ss_pred HHHHHhhhhHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcCCCCccccchHHHHhhcCcchhhHhhhcCchhcHHHHHHH
Q 016190 305 QQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLA 384 (393)
Q Consensus 305 q~~fLD~GiL~vLk~WLePLPDgSLPnl~IRt~LLkiL~~LPId~e~~d~rE~LK~SGLGKVVmfL~K~p~ET~eNKrlA 384 (393)
...+++.|++..|-..|.- ++..+|...+.+|.+|-.... ..+..+..+|+-..++.+-+++ .+.++..|
T Consensus 47 ~~~~~~~g~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~--~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a 116 (252)
T 4db8_A 47 IQAVIDAGALPALVQLLSS------PNEQILQEALWALSNIASGGN--EQIQAVIDAGALPALVQLLSSP--NEQILQEA 116 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGC------SCHHHHHHHHHHHHHHTTSCH--HHHHHHHHTTHHHHHHHGGGCS--CHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHcC------CCHHHHHHHHHHHHHHhcCCH--HHHHHHHHcCCHHHHHHHHcCC--CHHHHHHH
Confidence 4568888999999888863 347899999999999976322 2467777777666666666664 46677666
Q ss_pred HHHHH
Q 016190 385 KDLVD 389 (393)
Q Consensus 385 ~~LI~ 389 (393)
-..+.
T Consensus 117 ~~~L~ 121 (252)
T 4db8_A 117 LWALS 121 (252)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65553
No 19
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=24.71 E-value=2.4e+02 Score=28.23 Aligned_cols=75 Identities=19% Similarity=0.170 Sum_probs=52.7
Q ss_pred HHHHHHHHhhhhHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcCCCCccccchHHHHhhcCcchhhHhhhcCchhcHHHH
Q 016190 302 KQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNR 381 (393)
Q Consensus 302 ~~Lq~~fLD~GiL~vLk~WLePLPDgSLPnl~IRt~LLkiL~~LPId~e~~d~rE~LK~SGLGKVVmfL~K~p~ET~eNK 381 (393)
...+..|.++|++..|-.-|.- ++.+|+...+.+|.+|--+.+ .+..|.++|.-..+..|.+|+. ++++
T Consensus 447 ~~~~~~l~~~~~i~~Lv~lL~~------~~~~v~~~a~~aL~~l~~~~~---~~~~i~~~g~l~~L~~ll~~~~--~~vr 515 (644)
T 2z6h_A 447 VHNRIVIRGLNTIPLFVQLLYS------PIENIQRVAAGVLCELAQDKE---AAEAIEAEGATAPLTELLHSRN--EGVA 515 (644)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTC------SCHHHHHHHHHHHHHHHTSHH---HHHHHHHTTCHHHHHHHTTCSC--HHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHcC------CCHHHHHHHHHHHHHHHcCHH---HHHHHHHcCChhHHHHHHcCCC--HHHH
Confidence 3445667789999999888852 567899999999888754322 3678888887777887777654 4555
Q ss_pred HHHHHH
Q 016190 382 KLAKDL 387 (393)
Q Consensus 382 rlA~~L 387 (393)
..|-..
T Consensus 516 ~~A~~a 521 (644)
T 2z6h_A 516 TYAAAV 521 (644)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544433
No 20
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=23.08 E-value=2.1e+02 Score=28.13 Aligned_cols=74 Identities=18% Similarity=0.210 Sum_probs=47.6
Q ss_pred HHHHhhhhHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcCCCCccccchHHHHhhcCcchhhHhhhcCchhcHHHHHHHH
Q 016190 306 QEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNRKLAK 385 (393)
Q Consensus 306 ~~fLD~GiL~vLk~WLePLPDgSLPnl~IRt~LLkiL~~LPId~e~~d~rE~LK~SGLGKVVmfL~K~p~ET~eNKrlA~ 385 (393)
..|+ ..+|..|..|+.. ++.+ +-.+++..|-||..|.-+.. +....|+...+..|... ..-+.+|..+-
T Consensus 113 p~fv-~~lf~~L~~~~~~-~~~~--~~~l~KR~LsII~~L~~~~~------~F~~~~m~~L~~ly~~~-~~d~~~k~Kvl 181 (315)
T 3qml_C 113 PNFK-SKIMAALSNLNDS-NHRS--SNILIKRYLSILNELPVTSE------DLPIYSTVVLQNVYERN-NKDKQLQIKVL 181 (315)
T ss_dssp TTHH-HHHHHHHHHHHCC---CC--CHHHHHHHHHHHHHSCCCST------TC--CCHHHHHHHHHHT-TTCHHHHHHHH
T ss_pred hhHH-HHHHHHHHHHhhc-ccch--hHHHHHHHHHHHHHHhcChH------hhhhccHHHHHHHHccC-CCCHHHHHHHH
Confidence 4455 3455567777733 2223 44899999999999987653 34456766666666643 55888999888
Q ss_pred HHHHh
Q 016190 386 DLVDK 390 (393)
Q Consensus 386 ~LI~k 390 (393)
.||..
T Consensus 182 ~li~d 186 (315)
T 3qml_C 182 ELISK 186 (315)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 21
>2kt7_A Putative peptidoglycan bound protein (LPXTG motif); immunoglobulin fold, all-beta, peptidoglycan binding protein, structural genomics; NMR {Listeria monocytogenes}
Probab=21.38 E-value=54 Score=27.19 Aligned_cols=28 Identities=29% Similarity=0.425 Sum_probs=24.1
Q ss_pred CCCCCCCCCCCccccCCCCCCCchhhcc
Q 016190 8 YRDEDEEPLMDYDDIRSDPEQSPEHQQH 35 (393)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 35 (393)
|-|++|.+|.++..+-+-...--|+++|
T Consensus 73 YvDe~G~~i~~~~~i~~g~~~~~~~~~~ 100 (102)
T 2kt7_A 73 YVDETGKDLLPVVEIINSEAAVLEHHHH 100 (102)
T ss_dssp TTSSSCSCCCCCCCCCCCSSCCCCCCCC
T ss_pred EECCCCCCcCCCeEEecCchhhhhcccc
Confidence 8899999999999998887777777664
No 22
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=20.51 E-value=3.5e+02 Score=22.00 Aligned_cols=78 Identities=19% Similarity=0.166 Sum_probs=54.0
Q ss_pred HHHHHHHHhhhhHHHHHHhhccCCCCCCCCHHHHHHHHHHHhcCCCCccccchHHHHhhcCcchhhHhhhcCchhcHHHH
Q 016190 302 KQLQQEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILKILTEFPIDLEQFDRREQLKKSGLGKVIMFLSKSDEETTSNR 381 (393)
Q Consensus 302 ~~Lq~~fLD~GiL~vLk~WLePLPDgSLPnl~IRt~LLkiL~~LPId~e~~d~rE~LK~SGLGKVVmfL~K~p~ET~eNK 381 (393)
...+..+++.|++..|-.-|.- ++..+|...+.+|.+|-.... ..+..+..+|+-..++-+-+++ .+.++
T Consensus 44 ~~~~~~i~~~g~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~--~~~~~i~~~g~i~~L~~lL~~~--~~~v~ 113 (210)
T 4db6_A 44 NEQIQAVIDAGALPALVQLLSS------PNEQILQEALWALSNIASGGN--EQIQAVIDAGALPALVQLLSSP--NEQIL 113 (210)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTC------SCHHHHHHHHHHHHHHTTSCH--HHHHHHHHTTCHHHHHHHTTCS--CHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHcC------CCHHHHHHHHHHHHHHhcCCc--HHHHHHHHCCCHHHHHHHHcCC--cHHHH
Confidence 4556778889999999888852 478999999999999974322 2356677777666666665555 35666
Q ss_pred HHHHHHHH
Q 016190 382 KLAKDLVD 389 (393)
Q Consensus 382 rlA~~LI~ 389 (393)
..|-..+.
T Consensus 114 ~~a~~~L~ 121 (210)
T 4db6_A 114 QEALWALS 121 (210)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655443
Done!