Query 016191
Match_columns 393
No_of_seqs 313 out of 1631
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 09:26:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016191.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016191hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayj_A 50S ribosomal protein L 69.7 2.1 7.1E-05 29.9 1.8 28 158-185 18-45 (56)
2 3j21_g 50S ribosomal protein L 61.3 3.6 0.00012 28.2 1.6 29 157-185 12-40 (51)
3 2dkt_A Ring finger and CHY zin 40.8 9.7 0.00033 31.9 1.4 44 154-197 78-125 (143)
4 1joc_A EEA1, early endosomal a 37.4 13 0.00045 30.2 1.6 24 160-183 70-95 (125)
5 1x4u_A Zinc finger, FYVE domai 36.3 15 0.00052 27.5 1.8 23 160-182 15-39 (84)
6 1dvp_A HRS, hepatocyte growth 34.3 15 0.00051 32.7 1.7 24 160-183 162-187 (220)
7 1vfy_A Phosphatidylinositol-3- 31.4 13 0.00043 27.1 0.6 24 160-183 12-37 (73)
8 1wfk_A Zinc finger, FYVE domai 31.3 17 0.00059 27.6 1.3 24 160-183 10-35 (88)
9 3zyq_A Hepatocyte growth facto 29.0 19 0.00065 32.2 1.4 24 160-183 165-190 (226)
10 2yw8_A RUN and FYVE domain-con 27.7 16 0.00055 27.2 0.6 24 160-183 20-45 (82)
11 1z2q_A LM5-1; membrane protein 27.1 17 0.00057 27.3 0.6 25 159-183 21-47 (84)
12 2dkt_A Ring finger and CHY zin 26.7 13 0.00043 31.1 -0.2 36 156-191 98-136 (143)
13 3t7l_A Zinc finger FYVE domain 25.2 29 0.001 26.3 1.7 24 160-183 21-46 (90)
14 3u5e_m 60S ribosomal protein L 21.8 31 0.0011 27.7 1.3 25 158-182 92-118 (128)
15 1y02_A CARP2, FYVE-ring finger 20.4 23 0.0008 28.6 0.2 23 160-182 20-44 (120)
No 1
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=69.71 E-value=2.1 Score=29.90 Aligned_cols=28 Identities=29% Similarity=0.669 Sum_probs=24.1
Q ss_pred ccccccccCCCCCCCCccccccCccccc
Q 016191 158 TEKECSTCKIPKPARSKHCSICNRCVAR 185 (393)
Q Consensus 158 ~~~~C~tC~~~kP~RSkHC~~C~rCV~r 185 (393)
..+.|..|...-|+|+..|+.|+..-+|
T Consensus 18 ~k~ICrkC~ARnp~~A~~CRKCg~~~LR 45 (56)
T 2ayj_A 18 LKKVCRKCGALNPIRATKCRRCHSTNLR 45 (56)
T ss_dssp CCEEETTTCCEECTTCSSCTTTCCCCEE
T ss_pred chhhhccccCcCCcccccccCCCCCCCC
Confidence 4689999999999999999999865444
No 2
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=61.31 E-value=3.6 Score=28.24 Aligned_cols=29 Identities=24% Similarity=0.552 Sum_probs=24.6
Q ss_pred cccccccccCCCCCCCCccccccCccccc
Q 016191 157 YTEKECSTCKIPKPARSKHCSICNRCVAR 185 (393)
Q Consensus 157 ~~~~~C~tC~~~kP~RSkHC~~C~rCV~r 185 (393)
...+.|..|...-|+++..|+.||.--+|
T Consensus 12 ~~k~iCpkC~a~~~~gaw~CrKCG~~~lr 40 (51)
T 3j21_g 12 FKKYVCLRCGATNPWGAKKCRKCGYKRLR 40 (51)
T ss_dssp SSEEECTTTCCEECTTCSSCSSSSSCCCE
T ss_pred hCCccCCCCCCcCCCCceecCCCCCcccc
Confidence 35689999999999999999999876444
No 3
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=40.78 E-value=9.7 Score=31.86 Aligned_cols=44 Identities=27% Similarity=0.595 Sum_probs=26.9
Q ss_pred ccccccccccccCCCCCCCC-ccccccCccccc--c-ccccccccccc
Q 016191 154 NIIYTEKECSTCKIPKPARS-KHCSICNRCVAR--F-DHHCGWMNNCI 197 (393)
Q Consensus 154 ~~~~~~~~C~tC~~~kP~RS-kHC~~C~rCV~r--~-DHHC~WinnCV 197 (393)
+..+...+|..|+.+.+.+. .||..||-|-.. - =-||-=-|-|+
T Consensus 78 g~~f~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~ 125 (143)
T 2dkt_A 78 STLFGEYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCL 125 (143)
T ss_dssp CCBSCSEECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEE
T ss_pred CccceeeEeceeecccCCCceecCCCCCceeccCCcCcEECCcCCeee
Confidence 44556678888888866543 677777776654 1 13555555554
No 4
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=37.42 E-value=13 Score=30.21 Aligned_cols=24 Identities=25% Similarity=0.695 Sum_probs=17.4
Q ss_pred ccccccCCC--CCCCCccccccCccc
Q 016191 160 KECSTCKIP--KPARSKHCSICNRCV 183 (393)
Q Consensus 160 ~~C~tC~~~--kP~RSkHC~~C~rCV 183 (393)
..|..|... --.|-|||+.||+-+
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vf 95 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIF 95 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCCcCcCCccccccccccCCCCCeEE
Confidence 578888753 235889999999743
No 5
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.31 E-value=15 Score=27.47 Aligned_cols=23 Identities=22% Similarity=0.673 Sum_probs=16.7
Q ss_pred ccccccCCC--CCCCCccccccCcc
Q 016191 160 KECSTCKIP--KPARSKHCSICNRC 182 (393)
Q Consensus 160 ~~C~tC~~~--kP~RSkHC~~C~rC 182 (393)
..|..|... --.|-|||+.||+-
T Consensus 15 ~~C~~C~~~F~~~~RrHHCR~CG~v 39 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKRRSCSNCGNS 39 (84)
T ss_dssp SSCSSSCCCCCSSSCCEECSSSCCE
T ss_pred CcCcCcCCccccchhhhhhcCCCcE
Confidence 567777653 34588999999874
No 6
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=34.31 E-value=15 Score=32.69 Aligned_cols=24 Identities=25% Similarity=0.814 Sum_probs=17.1
Q ss_pred ccccccCCC--CCCCCccccccCccc
Q 016191 160 KECSTCKIP--KPARSKHCSICNRCV 183 (393)
Q Consensus 160 ~~C~tC~~~--kP~RSkHC~~C~rCV 183 (393)
..|..|... ---|-|||+.||+.+
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~ 187 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVF 187 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CccCCCCCccCCcccccccCCcCCEE
Confidence 678888642 234889999998754
No 7
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=31.44 E-value=13 Score=27.14 Aligned_cols=24 Identities=25% Similarity=0.641 Sum_probs=17.3
Q ss_pred ccccccCCC--CCCCCccccccCccc
Q 016191 160 KECSTCKIP--KPARSKHCSICNRCV 183 (393)
Q Consensus 160 ~~C~tC~~~--kP~RSkHC~~C~rCV 183 (393)
..|..|... --.|-|||+.||+-+
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~ 37 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVF 37 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEE
Confidence 468888753 234889999999843
No 8
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=31.25 E-value=17 Score=27.56 Aligned_cols=24 Identities=21% Similarity=0.580 Sum_probs=17.2
Q ss_pred ccccccCCC--CCCCCccccccCccc
Q 016191 160 KECSTCKIP--KPARSKHCSICNRCV 183 (393)
Q Consensus 160 ~~C~tC~~~--kP~RSkHC~~C~rCV 183 (393)
..|..|... --.|-|||+.||+-+
T Consensus 10 ~~C~~C~~~F~~~~RrHHCR~CG~vf 35 (88)
T 1wfk_A 10 SRCYGCAVKFTLFKKEYGCKNCGRAF 35 (88)
T ss_dssp SBCTTTCCBCCSSSCEEECSSSCCEE
T ss_pred CCCcCcCCcccCccccccCCCCCCEE
Confidence 568888753 235889999998743
No 9
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=29.04 E-value=19 Score=32.24 Aligned_cols=24 Identities=29% Similarity=0.886 Sum_probs=16.3
Q ss_pred ccccccCCC--CCCCCccccccCccc
Q 016191 160 KECSTCKIP--KPARSKHCSICNRCV 183 (393)
Q Consensus 160 ~~C~tC~~~--kP~RSkHC~~C~rCV 183 (393)
..|..|... ---|-|||+.||+.+
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~ 190 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIF 190 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCCcCcCCCCCccccccccCCCcCEe
Confidence 578888642 123779999888753
No 10
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=27.67 E-value=16 Score=27.23 Aligned_cols=24 Identities=25% Similarity=0.708 Sum_probs=17.3
Q ss_pred ccccccCCC--CCCCCccccccCccc
Q 016191 160 KECSTCKIP--KPARSKHCSICNRCV 183 (393)
Q Consensus 160 ~~C~tC~~~--kP~RSkHC~~C~rCV 183 (393)
..|..|... --.|-|||+.||+-+
T Consensus 20 ~~C~~C~~~Fs~~~RrHHCR~CG~v~ 45 (82)
T 2yw8_A 20 THCRQCEKEFSISRRKHHCRNCGHIF 45 (82)
T ss_dssp CBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CcccCcCCcccCccccccCCCCCCEE
Confidence 568888653 234889999999854
No 11
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=27.07 E-value=17 Score=27.27 Aligned_cols=25 Identities=24% Similarity=0.667 Sum_probs=17.9
Q ss_pred cccccccCCC--CCCCCccccccCccc
Q 016191 159 EKECSTCKIP--KPARSKHCSICNRCV 183 (393)
Q Consensus 159 ~~~C~tC~~~--kP~RSkHC~~C~rCV 183 (393)
...|..|+.. --.|-|||+.||+-+
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 47 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVL 47 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEE
T ss_pred CCCCcCcCCccccchhcccccCCCcEE
Confidence 3578888753 235889999998843
No 12
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=26.66 E-value=13 Score=31.14 Aligned_cols=36 Identities=31% Similarity=0.694 Sum_probs=27.2
Q ss_pred ccccccccccCCCCCCCCccccccCccccc--cc-cccc
Q 016191 156 IYTEKECSTCKIPKPARSKHCSICNRCVAR--FD-HHCG 191 (393)
Q Consensus 156 ~~~~~~C~tC~~~kP~RSkHC~~C~rCV~r--~D-HHC~ 191 (393)
+|+=..|..|++=+..--.||..||.|+.. .| |.|+
T Consensus 98 ~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~C~ 136 (143)
T 2dkt_A 98 QYHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCI 136 (143)
T ss_dssp EEEETTTTEEEESCGGGEEEETTTTEEEEGGGSSSSCCS
T ss_pred eecCCCCCceeccCCcCcEECCcCCeeeccccCcCcccC
Confidence 345567888887777788999999999653 44 8775
No 13
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=25.19 E-value=29 Score=26.28 Aligned_cols=24 Identities=25% Similarity=0.820 Sum_probs=16.8
Q ss_pred ccccccCCC--CCCCCccccccCccc
Q 016191 160 KECSTCKIP--KPARSKHCSICNRCV 183 (393)
Q Consensus 160 ~~C~tC~~~--kP~RSkHC~~C~rCV 183 (393)
..|..|... --.|-|||+.||+-+
T Consensus 21 ~~C~~C~~~F~~~~RrhhCr~CG~v~ 46 (90)
T 3t7l_A 21 PNCMNCQVKFTFTKRRHHCRACGKVF 46 (90)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CcCcCCCCcccchhhCccccCCCCEE
Confidence 568888742 234789999998743
No 14
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=21.79 E-value=31 Score=27.70 Aligned_cols=25 Identities=24% Similarity=0.701 Sum_probs=21.6
Q ss_pred ccccccccCCCCCCCCccccc--cCcc
Q 016191 158 TEKECSTCKIPKPARSKHCSI--CNRC 182 (393)
Q Consensus 158 ~~~~C~tC~~~kP~RSkHC~~--C~rC 182 (393)
..+.|..|...-|+|++.|+. ||+.
T Consensus 92 ~~~ic~~~~~~~~~~~~~~~~~~c~~~ 118 (128)
T 3u5e_m 92 DKSVCRKCYARLPPRATNCRKRKCGHT 118 (128)
T ss_dssp SCEEETTTCCEECTTCSSCSCTTTTSC
T ss_pred ceEeeccccccCCchhhccchhhCCCc
Confidence 357999999999999999994 8764
No 15
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=20.36 E-value=23 Score=28.58 Aligned_cols=23 Identities=26% Similarity=0.715 Sum_probs=17.0
Q ss_pred ccccccCCC--CCCCCccccccCcc
Q 016191 160 KECSTCKIP--KPARSKHCSICNRC 182 (393)
Q Consensus 160 ~~C~tC~~~--kP~RSkHC~~C~rC 182 (393)
..|..|... --.|-|||+.||+.
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~i 44 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKN 44 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCE
T ss_pred CcccCcCCccccccccccCCCCCCe
Confidence 578888652 24588999999984
Done!