BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016192
(393 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P02|A Chain A, Crystal Structure Of The Alpha Subunit Of Human S-
Adenosylmethionine Synthetase 2
Length = 396
Score = 476 bits (1224), Expect = e-134, Method: Compositional matrix adjust.
Identities = 238/386 (61%), Positives = 286/386 (74%), Gaps = 7/386 (1%)
Query: 3 TFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAK 62
TFLFTSESV EGHPDK+CDQISDAVLDA L+QDP++KVACET KT M+++ GEIT++A
Sbjct: 18 TFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAA 77
Query: 63 VDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGD 122
VDY+K+VR+ + IG+ G D C VLV +EQQSPDIAQGVH + EDIGAGD
Sbjct: 78 VDYQKVVREAVKHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQGVH--LDRNEEDIGAGD 135
Query: 123 QGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGA 182
QG MFGYATDET E MPL+ VLA KL A+L E+R+N T WLRPD KTQVTV+Y D GA
Sbjct: 136 QGLMFGYATDETEECMPLTIVLAHKLNAKLAELRRNGTLPWLRPDSKTQVTVQYMQDRGA 195
Query: 183 MVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGG 242
++P+RVHT++IS QHDE V DE+ LKE VIK V+P KYLDE TI+HL PSGRFVIGG
Sbjct: 196 VLPIRVHTIVISVQHDEEVCLDEMRDALKEKVIKAVVPAKYLDEDTIYHLQPSGRFVIGG 255
Query: 243 PHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGLARRC 302
P GDAGLTGRKII+DTY KD TKVDRS AY R AKS+V GL RR
Sbjct: 256 PQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKGGLCRRV 315
Query: 303 IVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRF 362
+VQVSYAIGV PLS+ + YGT + ++E+L+IVK++FD RPG++ +LDLK+ +
Sbjct: 316 LVQVSYAIGVSHPLSISIFHYGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKK---PIY 372
Query: 363 LKTAAYGHFGRDDPDFTWEVVKPLKW 388
+TAAYGHFGRD F WEV K LK+
Sbjct: 373 QRTAAYGHFGRD--SFPWEVPKKLKY 396
>pdb|2OBV|A Chain A, Crystal Structure Of The Human S-adenosylmethionine
Synthetase 1 In Complex With The Product
Length = 384
Score = 455 bits (1171), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/386 (58%), Positives = 282/386 (73%), Gaps = 7/386 (1%)
Query: 1 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTK 60
M F+FTSESV EGHPDK+CDQISDAVLDA L+QDP +KVACET KT MV++ GEIT+
Sbjct: 4 MGVFMFTSESVGEGHPDKICDQISDAVLDAHLKQDPNAKVACETVCKTGMVLLCGEITSM 63
Query: 61 AKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGA 120
A VDY+++VRDT + IG+ G D C VLV +EQQSPDIAQ VH + ED+GA
Sbjct: 64 AMVDYQRVVRDTIKHIGYDDSAKGFDFKTCNVLVALEQQSPDIAQCVH--LDRNEEDVGA 121
Query: 121 GDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDN 180
GDQG MFGYATDET E MPL+ +LA KL AR+ ++R++ WLRPD KTQVTV+Y DN
Sbjct: 122 GDQGLMFGYATDETEECMPLTIILAHKLNARMADLRRSGLLPWLRPDSKTQVTVQYMQDN 181
Query: 181 GAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI 240
GA++PVR+HT++IS QH+E +T +E+ LKE VI+ V+P KYLDE T++HL PSGRFVI
Sbjct: 182 GAVIPVRIHTIVISVQHNEDITLEEMRRALKEQVIRAVVPAKYLDEDTVYHLQPSGRFVI 241
Query: 241 GGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGLAR 300
GGP GDAG+TGRKII+DTY KD TKVDRS AY R AKS+V GL R
Sbjct: 242 GGPQGDAGVTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKAGLCR 301
Query: 301 RCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNG 360
R +VQVSYAIGV EPLS+ + +YGT + ++E+L +V ++FD RPG++ +LDLK+
Sbjct: 302 RVLVQVSYAIGVAEPLSISIFTYGTSQKTERELLDVVHKNFDLRPGVIVRDLDLKK---P 358
Query: 361 RFLKTAAYGHFGRDDPDFTWEVVKPL 386
+ KTA YGHFGR +F WEV + L
Sbjct: 359 IYQKTACYGHFGRS--EFPWEVPRKL 382
>pdb|1QM4|A Chain A, Methionine Adenosyltransferase Complexed With A
L-Methionine Analogous
pdb|1QM4|B Chain B, Methionine Adenosyltransferase Complexed With A
L-Methionine Analogous
pdb|1O90|A Chain A, Methionine Adenosyltransferase Complexed With A
L-Methionine Analogous
pdb|1O90|B Chain B, Methionine Adenosyltransferase Complexed With A
L-Methionine Analogous
pdb|1O92|A Chain A, Methionine Adenosyltransferase Complexed With Adp And A
L-Methionine Analogous
pdb|1O92|B Chain B, Methionine Adenosyltransferase Complexed With Adp And A
L-Methionine Analogous
pdb|1O93|A Chain A, Methionine Adenosyltransferase Complexed With Atp And A
L-Methionine Analogous
pdb|1O93|B Chain B, Methionine Adenosyltransferase Complexed With Atp And A
L-Methionine Analogous
pdb|1O9T|B Chain B, Methionine Adenosyltransferase Complexed With Both
Substrates Atp And Methionine
pdb|1O9T|A Chain A, Methionine Adenosyltransferase Complexed With Both
Substrates Atp And Methionine
Length = 396
Score = 455 bits (1170), Expect = e-128, Method: Compositional matrix adjust.
Identities = 227/384 (59%), Positives = 280/384 (72%), Gaps = 7/384 (1%)
Query: 3 TFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAK 62
F+FTSESV EGHPDK+CDQISDAVLDA L+QDP +KVACET KT MV++ GEIT+ A
Sbjct: 18 AFMFTSESVGEGHPDKICDQISDAVLDAHLKQDPNAKVACETVCKTGMVLLCGEITSMAM 77
Query: 63 VDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGD 122
+DY+++VRDT + IG+ G D C VLV +EQQSPDIAQ VH + ED+GAGD
Sbjct: 78 IDYQRVVRDTIKHIGYDDSAKGFDFKTCNVLVALEQQSPDIAQCVH--LDRNEEDVGAGD 135
Query: 123 QGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGA 182
QG MFGYATDET E MPL+ VLA KL R+ ++R++ WLRPD KTQVTV+Y DNGA
Sbjct: 136 QGLMFGYATDETEECMPLTIVLAHKLNTRMADLRRSGVLPWLRPDSKTQVTVQYVQDNGA 195
Query: 183 MVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGG 242
++PVRVHT++IS QH+E +T + + LKE VIK V+P KYLDE TI+HL PSGRFVIGG
Sbjct: 196 VIPVRVHTIVISVQHNEDITLEAMREALKEQVIKAVVPAKYLDEDTIYHLQPSGRFVIGG 255
Query: 243 PHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGLARRC 302
P GDAG+TGRKII+DTY KD TKVDRS AY R AKS+V GL RR
Sbjct: 256 PQGDAGVTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKAGLCRRV 315
Query: 303 IVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRF 362
+VQVSYAIGV EPLS+ + +YGT K ++E+L++V ++FD RPG++ +LDLK+ +
Sbjct: 316 LVQVSYAIGVAEPLSISIFTYGTSKKTERELLEVVNKNFDLRPGVIVRDLDLKK---PIY 372
Query: 363 LKTAAYGHFGRDDPDFTWEVVKPL 386
KTA YGHFGR +F WEV K L
Sbjct: 373 QKTACYGHFGRS--EFPWEVPKKL 394
>pdb|3SO4|A Chain A, Methionine-Adenosyltransferase From Entamoeba Histolytica
pdb|3SO4|B Chain B, Methionine-Adenosyltransferase From Entamoeba Histolytica
pdb|3SO4|C Chain C, Methionine-Adenosyltransferase From Entamoeba Histolytica
pdb|3SO4|D Chain D, Methionine-Adenosyltransferase From Entamoeba Histolytica
Length = 415
Score = 435 bits (1119), Expect = e-122, Method: Compositional matrix adjust.
Identities = 220/384 (57%), Positives = 271/384 (70%), Gaps = 5/384 (1%)
Query: 4 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKV 63
F FTSESV+ GHPDK+CDQISDA+LDACL QDP+S VACET TKT +++V GEITT A +
Sbjct: 23 FFFTSESVSGGHPDKMCDQISDAILDACLAQDPKSHVACETATKTGLILVLGEITTNAVI 82
Query: 64 DYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQ 123
D KIVR +SIG+ + G D C VL +EQQS DIA+GVH K+ EDIGAGDQ
Sbjct: 83 DIPKIVRGVVKSIGYDDTNKGFDYQTCSVLSCVEQQSQDIAKGVH--VEKKEEDIGAGDQ 140
Query: 124 GHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAM 183
G MFGYATDE+ E MPL+HVL+TKL RL E R+ WLRPD K+QVT+EY G +
Sbjct: 141 GIMFGYATDESKEMMPLTHVLSTKLILRLQECREKGILPWLRPDSKSQVTLEYEEVEGHL 200
Query: 184 VPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGP 243
P+RVHT++ISTQH + V+N+EIA L+E V + VIP++ +D+K + + NPSGRFVIGGP
Sbjct: 201 KPIRVHTIVISTQHADNVSNEEIAKGLEEEVTQKVIPKELMDDKMLRYYNPSGRFVIGGP 260
Query: 244 HGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGLARRCI 303
GDAGLTGRKII+DTY KD +KVDRSGAY R AKS+V GL R +
Sbjct: 261 MGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDSSKVDRSGAYCARWIAKSLVHAGLCHRVL 320
Query: 304 VQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFL 363
VQ+SYAIGV PLS+ V++YGTG + ++ IV ++FD RPGM+ L L R F
Sbjct: 321 VQLSYAIGVSHPLSINVNTYGTGICDESILVDIVNKNFDMRPGMIIKELGLTR---PIFQ 377
Query: 364 KTAAYGHFGRDDPDFTWEVVKPLK 387
KTA GHFGR+DPDF WE K L+
Sbjct: 378 KTAVGGHFGRNDPDFKWEFPKELE 401
>pdb|1FUG|A Chain A, S-adenosylmethionine Synthetase
pdb|1FUG|B Chain B, S-adenosylmethionine Synthetase
pdb|1P7L|A Chain A, S-Adenosylmethionine Synthetase Complexed With Amppnp And
Met.
pdb|1P7L|B Chain B, S-Adenosylmethionine Synthetase Complexed With Amppnp And
Met.
pdb|1P7L|C Chain C, S-Adenosylmethionine Synthetase Complexed With Amppnp And
Met.
pdb|1P7L|D Chain D, S-Adenosylmethionine Synthetase Complexed With Amppnp And
Met.
pdb|1RG9|A Chain A, S-adenosylmethionine Synthetase Complexed With Sam And
Ppnp
pdb|1RG9|B Chain B, S-adenosylmethionine Synthetase Complexed With Sam And
Ppnp
pdb|1RG9|C Chain C, S-adenosylmethionine Synthetase Complexed With Sam And
Ppnp
pdb|1RG9|D Chain D, S-adenosylmethionine Synthetase Complexed With Sam And
Ppnp
pdb|1MXA|A Chain A, S-Adenosylmethionine Synthetase With Ppi
pdb|1MXB|A Chain A, S-Adenosylmethionine Synthetase With Adp
pdb|1MXC|A Chain A, S-adenosylmethionine Synthetase With 8-br-adp
pdb|1XRA|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase
pdb|1XRC|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase
Length = 383
Score = 388 bits (996), Expect = e-108, Method: Compositional matrix adjust.
Identities = 204/377 (54%), Positives = 255/377 (67%), Gaps = 12/377 (3%)
Query: 5 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVD 64
LFTSESV+EGHPDK+ DQISDAVLDA LEQDP+++VACET KT MV+V GEITT A VD
Sbjct: 4 LFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVD 63
Query: 65 YEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQG 124
E+I R+T R IG+V D+G DA+ C VL I +QSPDI QGV P + GAGDQG
Sbjct: 64 IEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVD---RADPLEQGAGDQG 120
Query: 125 HMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMV 184
MFGYAT+ET MP A +L R EVRKN T WLRPD K+QVT +Y D+G +V
Sbjct: 121 LMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQY--DDGKIV 178
Query: 185 PVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPH 244
+ V++STQH E + + + E +IKP++P ++L T F +NP+GRFVIGGP
Sbjct: 179 --GIDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATKFFINPTGRFVIGGPM 236
Query: 245 GDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGLARRCIV 304
GD GLTGRKII+DTY KDP+KVDRS AY R AK+IVA GLA RC +
Sbjct: 237 GDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEI 296
Query: 305 QVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLK 364
QVSYAIGV EP S+ V+++GT K+P +++ +V+E FD RP + LDL + + +
Sbjct: 297 QVSYAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLL---HPIYKE 353
Query: 365 TAAYGHFGRDDPDFTWE 381
TAAYGHFGR+ F WE
Sbjct: 354 TAAYGHFGRE--HFPWE 368
>pdb|1XRB|A Chain A, S-adenosylmethionine Synthetase (mat, Atp: L-methionine S-
Adenosyltransferase, E.c.2.5.1.6) In Which Met Residues
Are Replaced With Selenomethionine Residues (mse)
Length = 383
Score = 379 bits (974), Expect = e-105, Method: Compositional matrix adjust.
Identities = 202/377 (53%), Positives = 252/377 (66%), Gaps = 12/377 (3%)
Query: 5 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVD 64
LFTSESV+EGHPDK+ DQISDAVLDA LEQDP+++VACET KT V+V GEITT A VD
Sbjct: 4 LFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGXVLVGGEITTSAWVD 63
Query: 65 YEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQG 124
E+I R+T R IG+V D G DA+ C VL I +QSPDI QGV P + GAGDQG
Sbjct: 64 IEEITRNTVREIGYVHSDXGFDANSCAVLSAIGKQSPDINQGVD---RADPLEQGAGDQG 120
Query: 125 HMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMV 184
FGYAT+ET P A +L R EVRKN T WLRPD K+QVT +Y D+G +V
Sbjct: 121 LXFGYATNETDVLXPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQY--DDGKIV 178
Query: 185 PVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPH 244
+ V++STQH E + + + E +IKP++P ++L T F +NP+GRFVIGGP
Sbjct: 179 --GIDAVVLSTQHSEEIDQKSLQEAVXEEIIKPILPAEWLTSATKFFINPTGRFVIGGPX 236
Query: 245 GDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGLARRCIV 304
GD GLTGRKII+DTY KDP+KVDRS AY R AK+IVA GLA RC +
Sbjct: 237 GDCGLTGRKIIVDTYGGXARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEI 296
Query: 305 QVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLK 364
QVSYAIGV EP S+ V+++GT K+P +++ +V+E FD RP + LDL + + +
Sbjct: 297 QVSYAIGVAEPTSIXVETFGTEKVPSEQLTLLVREFFDLRPYGLIQXLDLL---HPIYKE 353
Query: 365 TAAYGHFGRDDPDFTWE 381
TAAYGHFGR+ F WE
Sbjct: 354 TAAYGHFGRE--HFPWE 368
>pdb|3IML|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase From
Burkholderia Pseudomallei
pdb|3IML|B Chain B, Crystal Structure Of S-Adenosylmethionine Synthetase From
Burkholderia Pseudomallei
pdb|3IML|C Chain C, Crystal Structure Of S-Adenosylmethionine Synthetase From
Burkholderia Pseudomallei
pdb|3IML|D Chain D, Crystal Structure Of S-Adenosylmethionine Synthetase From
Burkholderia Pseudomallei
Length = 399
Score = 373 bits (957), Expect = e-103, Method: Compositional matrix adjust.
Identities = 197/379 (51%), Positives = 249/379 (65%), Gaps = 10/379 (2%)
Query: 4 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKV 63
+LFTSESV+EGHPDK+ DQISDA+LDA L QD S+VA ET T +V++ GEITT A +
Sbjct: 9 YLFTSESVSEGHPDKVADQISDAILDAILAQDKYSRVAAETLCNTGLVVLAGEITTTANI 68
Query: 64 DYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGV-HGHFTKRPEDIGAGD 122
DY +I RDT + IG+ + D G+D C VLV ++QSPDIAQGV H D GAGD
Sbjct: 69 DYIQIARDTIKRIGYDNTDYGIDYRGCAVLVAYDKQSPDIAQGVDRAHDNNL--DQGAGD 126
Query: 123 QGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGA 182
QG MFGYA DET E MPL L+ +L R +R++ WLRPD K+QVTV Y +
Sbjct: 127 QGLMFGYACDETPELMPLPIHLSHRLVERQANLRRDGRLPWLRPDAKSQVTVRYVDGK-- 184
Query: 183 MVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGG 242
P + TV++STQH + + + E VIKP +P + F +NP+GRFVIGG
Sbjct: 185 --PHSIDTVVLSTQHAPEIDLPALREAVIEEVIKPTLPADLIKGDIKFLVNPTGRFVIGG 242
Query: 243 PHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGLARRC 302
P GD GLTGRKII+DTY KDP+KVDRS AY R AK+IVA GLA R
Sbjct: 243 PQGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLASRA 302
Query: 303 IVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRF 362
++QVSYAIGV EP SV V+++GTG++ D+ I K+V+E FD RP + LDL R +
Sbjct: 303 LIQVSYAIGVAEPTSVMVNTFGTGRVSDETITKLVREHFDLRPKGIIQMLDLLR---PIY 359
Query: 363 LKTAAYGHFGRDDPDFTWE 381
KTAAYGHFGR++P+F+WE
Sbjct: 360 EKTAAYGHFGREEPEFSWE 378
>pdb|3S82|A Chain A, Structure Of A S-Adenosylmethionine Synthetase From
Mycobacterium Avium
pdb|3S82|B Chain B, Structure Of A S-Adenosylmethionine Synthetase From
Mycobacterium Avium
Length = 407
Score = 352 bits (904), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 198/392 (50%), Positives = 244/392 (62%), Gaps = 22/392 (5%)
Query: 5 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAK-- 62
LFTSESV EGHPDK+CD ISD+VLDA L QDP S+VA ET T V V GE+TT AK
Sbjct: 11 LFTSESVTEGHPDKICDAISDSVLDALLAQDPRSRVAVETLVTTGQVHVVGEVTTTAKEA 70
Query: 63 -VDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDI--- 118
D VR+ IG+ S D G D C V + I QSPDIAQGV R E
Sbjct: 71 FADITNTVRERILDIGYDSSDKGFDGASCGVNIGIGAQSPDIAQGVDTAHETRVEGAADP 130
Query: 119 ----GAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTV 174
GAGDQG MFGYA ++T E MPL LA +L RLTEVRKN +LRPDGKTQVT+
Sbjct: 131 LDAQGAGDQGLMFGYAINDTPERMPLPIALAHRLSRRLTEVRKNGVLPYLRPDGKTQVTI 190
Query: 175 EYYNDNGAMVPVRVHTVLISTQHDETV-TNDEIAADLKEHVIKPVIPEKYLD----EKTI 229
E+ +D VPVR+ TV+ISTQH + + + D++E V+ V+ + D T
Sbjct: 191 EFEDD----VPVRLDTVVISTQHAADIDLENTLTPDIREKVLNTVLNDLAHDTLDTSSTR 246
Query: 230 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQA 289
+NP+G+FV+GGP GDAGLTGRKII+DTY KDP+KVDRS AY +R
Sbjct: 247 LLVNPTGKFVVGGPMGDAGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAMRWV 306
Query: 290 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMT 349
AK+IVA GLA R VQV+YAIG P+ +F++++GT + +I KIV E FD RPG +
Sbjct: 307 AKNIVAAGLAERVEVQVAYAIGKAAPVGLFIETFGTATVDPVKIEKIVPEVFDLRPGAII 366
Query: 350 INLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 381
+LDL R + +TAAYGHFGR D + WE
Sbjct: 367 RDLDLLR---PIYAQTAAYGHFGRTDVELPWE 395
>pdb|3RV2|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase From
Mycobacterium Marinum
pdb|3RV2|B Chain B, Crystal Structure Of S-Adenosylmethionine Synthetase From
Mycobacterium Marinum
Length = 407
Score = 343 bits (880), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 196/392 (50%), Positives = 242/392 (61%), Gaps = 22/392 (5%)
Query: 5 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAK-- 62
LFTSESV EGHPDK+CD +SD+VLDA L DP S+VA ET T V V GE+TT AK
Sbjct: 11 LFTSESVTEGHPDKICDAVSDSVLDALLAADPRSRVAVETLVTTGQVHVVGEVTTTAKEA 70
Query: 63 -VDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDI--- 118
D IVR+ IG+ S D G D C V + I QSPDIAQGV R E
Sbjct: 71 FADITNIVRERILDIGYDSSDKGFDGASCGVNIGIGAQSPDIAQGVDTAHEARVEGAADP 130
Query: 119 ----GAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTV 174
GAGDQG MFGYA ++T E MPL LA +L RLTEVRKN +LRPDGKTQVT+
Sbjct: 131 LDAQGAGDQGLMFGYAINDTPELMPLPIALAHRLSRRLTEVRKNGVLPYLRPDGKTQVTI 190
Query: 175 EYYNDNGAMVPVRVHTVLISTQH-DETVTNDEIAADLKEHVIKPVIPE---KYLDEKTIF 230
Y + VPVR+ TV+ISTQH D+ + D++E V+K V+ + LD +
Sbjct: 191 AYED----RVPVRLDTVVISTQHADDIDLVKTLDPDIREQVLKTVLDDLAHDTLDASAVR 246
Query: 231 HL-NPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQA 289
L NP+G+FV+GGP GDAGLTGRKII+DTY KDP+KVDRS AY +R
Sbjct: 247 VLVNPTGKFVLGGPMGDAGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAMRWV 306
Query: 290 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMT 349
AK++VA GLA R VQV+YAIG P+ +FV+++G+ + +I K + E FD RPG +
Sbjct: 307 AKNVVAAGLAERVEVQVAYAIGKAAPVGLFVETFGSEAVDPVKIEKAIGEVFDLRPGAII 366
Query: 350 INLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 381
+L+L R + TAAYGHFGR D D WE
Sbjct: 367 RDLNLLR---PIYAPTAAYGHFGRTDVDLPWE 395
>pdb|3TDE|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase
Rv1392 From Mycobacterium Tuberculosis
pdb|3TDE|B Chain B, Crystal Structure Of S-Adenosylmethionine Synthetase
Rv1392 From Mycobacterium Tuberculosis
pdb|3TDE|C Chain C, Crystal Structure Of S-Adenosylmethionine Synthetase
Rv1392 From Mycobacterium Tuberculosis
pdb|3TDE|D Chain D, Crystal Structure Of S-Adenosylmethionine Synthetase
Rv1392 From Mycobacterium Tuberculosis
Length = 408
Score = 338 bits (867), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 197/392 (50%), Positives = 241/392 (61%), Gaps = 22/392 (5%)
Query: 5 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAK-- 62
LFTSESV EGHPDK+CD ISD+VLDA L DP S+VA ET T V V GE+TT AK
Sbjct: 12 LFTSESVTEGHPDKICDAISDSVLDALLAADPRSRVAVETLVTTGQVHVVGEVTTSAKEA 71
Query: 63 -VDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDI--- 118
D VR IG+ S D G D C V + I QSPDIAQGV R E
Sbjct: 72 FADITNTVRARILEIGYDSSDKGFDGATCGVNIGIGAQSPDIAQGVDTAHEARVEGAADP 131
Query: 119 ----GAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTV 174
GAGDQG MFGYA + T E MPL LA +L RLTEVRKN +LRPDGKTQVT+
Sbjct: 132 LDSQGAGDQGLMFGYAINATPELMPLPIALAHRLSRRLTEVRKNGVLPYLRPDGKTQVTI 191
Query: 175 EYYNDNGAMVPVRVHTVLISTQHDETVTNDE-IAADLKEHVIKPVIPE---KYLDEKTIF 230
Y DN VPVR+ TV+ISTQH + ++ + D++E V+ V+ + + LD T+
Sbjct: 192 AY-EDN---VPVRLDTVVISTQHAADIDLEKTLDPDIREKVLNTVLDDLAHETLDASTVR 247
Query: 231 HL-NPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQA 289
L NP+G+FV+GGP GDAGLTGRKII+DTY KDP+KVDRS AY +R
Sbjct: 248 VLVNPTGKFVLGGPMGDAGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAMRWV 307
Query: 290 AKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMT 349
AK++VA GLA R VQV+YAIG P+ +FV+++GT +I K + E FD RPG +
Sbjct: 308 AKNVVAAGLAERVEVQVAYAIGKAAPVGLFVETFGTETEDPVKIEKAIGEVFDLRPGAII 367
Query: 350 INLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 381
+L+L R + TAAYGHFGR D + WE
Sbjct: 368 RDLNLLR---PIYAPTAAYGHFGRTDVELPWE 396
>pdb|4DIO|A Chain A, The Crystal Structure Of Transhydrogenase From
Sinorhizobium Meliloti
pdb|4DIO|B Chain B, The Crystal Structure Of Transhydrogenase From
Sinorhizobium Meliloti
Length = 405
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 22/83 (26%)
Query: 279 DRSGAYIVRQAAKSIVANGLARRCIVQVSYAI-GVPEPLSVFVDSYGTGKIPDKEILKIV 337
+ SG Y V+QAA +VA +A++ IV + I G P P V
Sbjct: 256 EXSGEYQVKQAA--LVAEHIAKQDIVITTALIPGRPAPRLV------------------T 295
Query: 338 KESFD-FRPGMMTINLDLKRGGN 359
+E D +PG + ++L ++RGGN
Sbjct: 296 REXLDSXKPGSVVVDLAVERGGN 318
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,510,306
Number of Sequences: 62578
Number of extensions: 529055
Number of successful extensions: 1225
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1183
Number of HSP's gapped (non-prelim): 11
length of query: 393
length of database: 14,973,337
effective HSP length: 101
effective length of query: 292
effective length of database: 8,652,959
effective search space: 2526664028
effective search space used: 2526664028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)