Query 016192
Match_columns 393
No_of_seqs 156 out of 1141
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 09:27:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016192.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016192hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3so4_A Methionine-adenosyltran 100.0 3E-191 1E-195 1410.8 34.7 383 2-389 21-403 (415)
2 3iml_A S-adenosylmethionine sy 100.0 1E-189 4E-194 1396.4 34.2 381 2-390 7-387 (399)
3 3s82_A S-adenosylmethionine sy 100.0 2E-189 6E-194 1399.2 28.4 381 3-390 9-404 (407)
4 2p02_A S-adenosylmethionine sy 100.0 6E-188 2E-192 1384.9 33.4 379 3-388 18-396 (396)
5 1p7l_A S-adenosylmethionine sy 100.0 1E-187 4E-192 1378.0 31.2 376 3-390 2-377 (383)
6 4hpv_A S-adenosylmethionine sy 98.4 1.7E-06 5.7E-11 87.4 12.8 301 12-341 29-389 (407)
7 1mp9_A Tata-binding protein; t 44.8 95 0.0033 28.3 8.8 80 186-298 13-96 (198)
8 2gjh_A Designed protein; oblig 43.6 20 0.00068 26.9 3.3 38 64-101 18-55 (62)
9 2z8u_A Tata-box-binding protei 32.8 75 0.0026 28.7 6.0 80 186-298 13-96 (188)
10 3kxy_T EXSE; type-three secret 30.2 31 0.0011 26.1 2.5 21 269-293 17-37 (66)
11 1qys_A TOP7; alpha-beta, novel 29.0 23 0.00077 28.9 1.7 38 64-101 62-99 (106)
12 1ais_A TBP, protein (tata-bind 28.3 48 0.0016 29.8 3.9 81 185-298 8-92 (182)
13 2w42_A PIWI, putative uncharac 27.9 40 0.0014 33.8 3.7 25 136-160 385-409 (427)
14 3pvv_A Chromosomal replication 26.0 46 0.0016 27.1 3.1 28 324-351 1-28 (101)
No 1
>3so4_A Methionine-adenosyltransferase; structural genomics, medical structural genomics of pathogen protozoa, MSGPP; 3.18A {Entamoeba histolytica}
Probab=100.00 E-value=3.4e-191 Score=1410.76 Aligned_cols=383 Identities=61% Similarity=1.001 Sum_probs=365.8
Q ss_pred CcceeeccccCCCCCchhhhhhHHHHHHHHhhcCCCCcEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCCCC
Q 016192 2 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSD 81 (393)
Q Consensus 2 ~~~lfTSESV~~GHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~V~i~GEitt~a~vd~~~ivR~~l~~IGY~~~ 81 (393)
++||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++||+++|||++|++|||+++
T Consensus 21 ~~~lFTSESVseGHPDKicDqISDAILDa~L~qDp~arVAcEt~vttg~V~v~GEItt~a~vD~~~ivR~~ik~IGY~~~ 100 (415)
T 3so4_A 21 SRFFFTSESVSGGHPDKMCDQISDAILDACLAQDPKSHVACETATKTGLILVLGEITTNAVIDIPKIVRGVVKSIGYDDT 100 (415)
T ss_dssp -CEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEECSSEEEEEEEEECSCCCCHHHHHHHHHHHHTCEEG
T ss_pred cceeEeeccccCCCChHHHhhHhHHHHHHHHhcCCCCcEEEEEEeecCeEEEEEEEecccccCHHHHHHHHHhccCCCCc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEEeecCCChhhhcccCCCCCCCCCCCCCCcceeeEeEecCCCCCCCCchHHHHHHHHHHHHHHHHcCCC
Q 016192 82 DVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTC 161 (393)
Q Consensus 82 ~~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~l~~~l~~~Rk~g~~ 161 (393)
++|||+++|+|+++|++|||||+|||+.+ +..+++|||||||||||||||||+||||||+|||+|++||+++||+|++
T Consensus 101 ~~gFd~~tc~Vl~~i~~QSpDIaqGVd~~--~~~~~~GAGDQGiMFGYAtdET~elMPlpi~lAH~L~~rla~~Rk~g~l 178 (415)
T 3so4_A 101 NKGFDYQTCSVLSCVEQQSQDIAKGVHVE--KKEEDIGAGDQGIMFGYATDESKEMMPLTHVLSTKLILRLQECREKGIL 178 (415)
T ss_dssp GGTEETTTCEEEEEEEEECCC-------------CCCCCSSCEEEEEEEETTSTTSSCHHHHHHHHHHHHHHHHHHHSSS
T ss_pred ccCccCCceEEEEecccCChhhhhccccc--cchhhcCCCcceeEEEEecCCCcccCCcHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999963 2235799999999999999999999999999999999999999999999
Q ss_pred CcccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhccccCCCCCCCCCcEEEECCCCCeEEc
Q 016192 162 SWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIG 241 (393)
Q Consensus 162 ~~l~pD~KtQVtv~Y~~~~g~~~p~rv~tiviS~QH~~~v~~~~l~~~i~e~vi~~v~~~~~~~~~t~~~INPtG~FviG 241 (393)
||||||+||||||+|++++|+++|+||++||||+||++++++++|+++|+|+||++|+|++|++++|+||||||||||||
T Consensus 179 ~~LrPD~KtQVTveY~~~~g~~~P~rv~tvViStQH~~~v~~~~l~~~i~e~VI~~vip~~~ld~~t~~~INPtGrFViG 258 (415)
T 3so4_A 179 PWLRPDSKSQVTLEYEEVEGHLKPIRVHTIVISTQHADNVSNEEIAKGLEEEVTQKVIPKELMDDKMLRYYNPSGRFVIG 258 (415)
T ss_dssp TTEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEECTTSCHHHHHHHHHHHTHHHHSCTTTCCSSCEEEESTTCCCCSC
T ss_pred CeeccCcceEEEEEEEcCCCCceeeEEEEEEEEEecCCCCCHHHHHHHHHHHHHHHhcCcccCCCCeEEEECCCCCeEEC
Confidence 99999999999999987667889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccCCceEEEecCCCccccccccCcCCCCCCccchhhHHHHHHHHHHHHhccccccEEEEEEEeccccceeEEEE
Q 016192 242 GPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVD 321 (393)
Q Consensus 242 GP~~DtGLTGRKiiVDTYGg~a~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~cevQlsYAIG~a~Pvsi~V~ 321 (393)
||+||+|||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+||+||
T Consensus 259 GP~gDaGLTGRKIIVDTYGG~~~HGGGAFSGKDptKVDRSaAYaAR~vAKniVAAGLA~rc~VQlsYAIGva~PvSi~V~ 338 (415)
T 3so4_A 259 GPMGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDSSKVDRSGAYCARWIAKSLVHAGLCHRVLVQLSYAIGVSHPLSINVN 338 (415)
T ss_dssp TTTTSCEETTSCTTTTTTTTSSCCCSCCCTTBCTTSHHHHHHHHHHHHHHHHHHTTSCSEEEEEEEECTTCSSCSEEEEE
T ss_pred CCcccccccCceEEEEccCCcccCCCccccCCCccccccchhHHHHHHHHHHHHcCCcCeEEEEEEEeeccccceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHhCCCChHhHHhhhccccccccccccccccccCCCCCCCCCccccccCccc
Q 016192 322 SYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWE 389 (393)
Q Consensus 322 tfgt~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~p~~~iY~~ta~yGHFGr~~~~fpWE~~dk~~~~ 389 (393)
||||+++++++|.++|+++|||||++||++|+|++| ||++||+||||||++++||||++|+|.+.
T Consensus 339 TfGT~~~~~~~i~~~v~~~FdlrP~~Ii~~L~L~~P---iY~~tAaYGHFGR~~~~f~WE~~d~l~~~ 403 (415)
T 3so4_A 339 TYGTGICDESILVDIVNKNFDMRPGMIIKELGLTRP---IFQKTAVGGHFGRNDPDFKWEFPKELEIP 403 (415)
T ss_dssp ECSCCSSCHHHHHHHHHHHCCCCHHHHHHHHTTTSS---CCTGGGSSCSSSCCCTTCTTSSCCCCCCC
T ss_pred eCCCCcCCHHHHHHHHHHhcCCCHHHHHHHcCCCCC---cchhhcccccCCCCCCCCCCcCCcccCCC
Confidence 999999999999999999999999999999999999 99999999999999889999999999863
No 2
>3iml_A S-adenosylmethionine synthetase; structural genomics, ATP-BI cobalt, magnesium, metal-binding, nucleotide-binding, one-C metabolism; 2.35A {Burkholderia pseudomallei}
Probab=100.00 E-value=1.1e-189 Score=1396.36 Aligned_cols=381 Identities=54% Similarity=0.883 Sum_probs=353.5
Q ss_pred CcceeeccccCCCCCchhhhhhHHHHHHHHhhcCCCCcEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCCCC
Q 016192 2 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSD 81 (393)
Q Consensus 2 ~~~lfTSESV~~GHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~V~i~GEitt~a~vd~~~ivR~~l~~IGY~~~ 81 (393)
++||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++||+++|||++|++|||+++
T Consensus 7 ~~~lFTSESVseGHPDKicDqISDaILDa~L~~Dp~arVAcEt~~~tg~V~v~GEItt~a~vd~~~ivR~~i~~IGY~~~ 86 (399)
T 3iml_A 7 NDYLFTSESVSEGHPDKVADQISDAILDAILAQDKYSRVAAETLCNTGLVVLAGEITTTANIDYIQIARDTIKRIGYDNT 86 (399)
T ss_dssp CEEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEECSSEEEEEEEEECSCCCCHHHHHHHHHHHHTCC--
T ss_pred cCceEeccccCCCCCcHHHHHHhHHHHHHHHhcCCCCcEEEEEEeccCeEEEEEEEecccccCHHHHHHHHHhccCCCCc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEEeecCCChhhhcccCCCCCCCCCCCCCCcceeeEeEecCCCCCCCCchHHHHHHHHHHHHHHHHcCCC
Q 016192 82 DVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTC 161 (393)
Q Consensus 82 ~~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~l~~~l~~~Rk~g~~ 161 (393)
++|||++||+|+++|++|||||+|||+.+. .+.+++|||||||||||||||||+||||||+|||+|++||+++||+|++
T Consensus 87 ~~gFd~~tc~Vl~~i~~QSpDIaqGVd~~~-~~~~~~GAGDQGiMFGYA~~ET~elMPlpi~lAH~L~~rl~~~Rk~g~l 165 (399)
T 3iml_A 87 DYGIDYRGCAVLVAYDKQSPDIAQGVDRAH-DNNLDQGAGDQGLMFGYACDETPELMPLPIHLSHRLVERQANLRRDGRL 165 (399)
T ss_dssp -------CCEEEEEEEEECC-------------CTTCCBSSCEEEEEEEETTSTTSCCHHHHHHHHHHHHHHHHHHTTSS
T ss_pred ccCccCCceEEEEecccCChhHhhhhcccc-cchhhcCcCcceeEEEEecCCccccCCcHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999521 1235799999999999999999999999999999999999999999999
Q ss_pred CcccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhccccCCCCCCCCCcEEEECCCCCeEEc
Q 016192 162 SWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIG 241 (393)
Q Consensus 162 ~~l~pD~KtQVtv~Y~~~~g~~~p~rv~tiviS~QH~~~v~~~~l~~~i~e~vi~~v~~~~~~~~~t~~~INPtG~FviG 241 (393)
||||||+||||||+|++ | +|+||+|||||+||++++++++|+++|+|+||+|++|++|++++|+||||||||||||
T Consensus 166 ~~LrPD~KtQVTveY~~--~--~P~rv~tvViStQH~~~v~~~~l~~~i~e~vi~~vip~~~l~~~t~~~INPtGrFViG 241 (399)
T 3iml_A 166 PWLRPDAKSQVTVRYVD--G--KPHSIDTVVLSTQHAPEIDLPALREAVIEEVIKPTLPADLIKGDIKFLVNPTGRFVIG 241 (399)
T ss_dssp TTEEEEEEEEEEEEEET--T--EEEEEEEEEEEEEECTTSCHHHHHHHHHHHTTTTTSCGGGCCTTCEEEESTTCCCCSC
T ss_pred CeecCCCceEEEEEEEC--C--ceeeEEEEEEEeecCCCCCHHHHHHHHHHHHHHHhcCcccCCCCcEEEECCCCCeEeC
Confidence 99999999999999974 5 8999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccCCceEEEecCCCccccccccCcCCCCCCccchhhHHHHHHHHHHHHhccccccEEEEEEEeccccceeEEEE
Q 016192 242 GPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVD 321 (393)
Q Consensus 242 GP~~DtGLTGRKiiVDTYGg~a~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~cevQlsYAIG~a~Pvsi~V~ 321 (393)
||+||+|||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+||+||
T Consensus 242 GP~gDaGLTGRKIIVDTYGG~~~HGGGAFSGKDptKVDRSaAYaAR~vAKniVAAGLA~rc~VQlsYAIGva~P~Si~V~ 321 (399)
T 3iml_A 242 GPQGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLASRALIQVSYAIGVAEPTSVMVN 321 (399)
T ss_dssp GGGTSCEETTSCTTTTTTTTSSCCCSCCCTTBCTTSHHHHHHHHHHHHHHHHHHTTSCSEEEEEEEECBTCSSCSEEEEE
T ss_pred CCcccccccccceeeecCCcccCCCCccccCCCccccchHHHHHHHHHHHHHHhhcccceeEEEEEEecCcccceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHhCCCChHhHHhhhccccccccccccccccccCCCCCCCCCccccccCcccC
Q 016192 322 SYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 390 (393)
Q Consensus 322 tfgt~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~p~~~iY~~ta~yGHFGr~~~~fpWE~~dk~~~~~ 390 (393)
||||+++++++|.++|+++|||||++||++|+|++| ||++||+||||||++++||||+||+++.|+
T Consensus 322 tfGT~~~~~~~i~~~v~~~FdlrP~~Ii~~L~L~~P---iY~~tAaYGHFGR~~~~f~WE~~d~v~~lk 387 (399)
T 3iml_A 322 TFGTGRVSDETITKLVREHFDLRPKGIIQMLDLLRP---IYEKTAAYGHFGREEPEFSWEAADKALALA 387 (399)
T ss_dssp CTTCCSSCHHHHHHHHHHHCCCSHHHHHHHHTCCSS---CCGGGGSSCSSSCCCTTCGGGCCTTHHHHH
T ss_pred eCCCcccCHHHHHHHHHHHcCCCHHHHHHHcCCCCC---chhhhcCcCCCCCCCCCCCccCccHHHHHH
Confidence 999999999999999999999999999999999999 999999999999998899999999988763
No 3
>3s82_A S-adenosylmethionine synthase; seattle structural genomics center for infectious disease, S adenosylmethionine synthetase, transferase; 1.73A {Mycobacterium avium} PDB: 3tde_A 3rv2_A
Probab=100.00 E-value=1.8e-189 Score=1399.17 Aligned_cols=381 Identities=54% Similarity=0.864 Sum_probs=356.6
Q ss_pred cceeeccccCCCCCchhhhhhHHHHHHHHhhcCCCCcEEEEEEeeeCeEEEEEEeeee---eeccHHHHHHHHHHhhCCC
Q 016192 3 TFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTK---AKVDYEKIVRDTCRSIGFV 79 (393)
Q Consensus 3 ~~lfTSESV~~GHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~V~i~GEitt~---a~vd~~~ivR~~l~~IGY~ 79 (393)
+||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+ ++||+++|||++|++|||+
T Consensus 9 ~~lFTSESVseGHPDKicDqISDAILDa~L~~Dp~arVAcEt~vttg~V~v~GEItt~~~~a~vd~~~ivR~~i~~IGY~ 88 (407)
T 3s82_A 9 GRLFTSESVTEGHPDKICDAISDSVLDALLAQDPRSRVAVETLVTTGQVHVVGEVTTTAKEAFADITNTVRERILDIGYD 88 (407)
T ss_dssp CEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEETTEEEEEEEEECSCHHHHHTHHHHHHHHHHHHTCE
T ss_pred ceEEeeccccCCCCcHHHhhhhHHHHHHHHhcCCCCcEEEEEEeccCeEEEEEEEeeCCcccccCHHHHHHHHHHhcCCC
Confidence 5899999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred CCCCCCCCCceEEEEeecCCChhhhcccCCCCC-------CCCCCCCCCcceeeEeEecCCCCCCCCchHHHHHHHHHHH
Q 016192 80 SDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFT-------KRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARL 152 (393)
Q Consensus 80 ~~~~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~-------~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~l~~~l 152 (393)
++++|||+++|+|+++|++|||||+|||+.+.+ +..+++|||||||||||||||||+||||||+|||+|++||
T Consensus 89 ~~~~gFd~~tc~Vl~~i~~QSpDIaqGVd~~~e~r~~~~~~~~~~~GAGDQGiMFGYA~~ET~elMPlpi~lAH~L~~rl 168 (407)
T 3s82_A 89 SSDKGFDGASCGVNIGIGAQSPDIAQGVDTAHETRVEGAADPLDAQGAGDQGLMFGYAINDTPERMPLPIALAHRLSRRL 168 (407)
T ss_dssp EGGGTEETTTSEEEEEEEEECC--------------------------CCCEEEEEEEETTSTTSSCHHHHHHHHHHHHH
T ss_pred CcccCcCCCceEEEEecccCChHHHhhhcchhhcccccccchhhhcCCccceeEEEEecCCCcccCchHHHHHHHHHHHH
Confidence 999999999999999999999999999996421 1125799999999999999999999999999999999999
Q ss_pred HHHHHcCCCCcccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHH-HHHHHHHhhccccCCC----CCCCCC
Q 016192 153 TEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDE-IAADLKEHVIKPVIPE----KYLDEK 227 (393)
Q Consensus 153 ~~~Rk~g~~~~l~pD~KtQVtv~Y~~~~g~~~p~rv~tiviS~QH~~~v~~~~-l~~~i~e~vi~~v~~~----~~~~~~ 227 (393)
+++||+|++||||||+||||||+|++ | +|+||+|||||+||++++++++ |+++|+|+||+||+|+ +|++++
T Consensus 169 a~~Rk~g~l~~LrPD~KtQVTveY~~--~--~P~rv~tvViStQH~~~v~~~~~l~~~i~e~VI~~vip~~~~~~~~~~~ 244 (407)
T 3s82_A 169 TEVRKNGVLPYLRPDGKTQVTIEFED--D--VPVRLDTVVISTQHAADIDLENTLTPDIREKVLNTVLNDLAHDTLDTSS 244 (407)
T ss_dssp HHHHHTSSSTTEEEEEEEEEEEEEET--T--EEEEEEEEEEEEEECTTCCTTTTHHHHHHHHTHHHHHHHHCCSSCBCTT
T ss_pred HHHHHcCCCCeecCCCceEEEEEEEC--C--ceeeEEEEEEEeecCCCCCHHHHHHHHHHHHHHHHhcCcccccccCCcC
Confidence 99999999999999999999999974 6 8999999999999999999999 9999999999999998 889999
Q ss_pred cEEEECCCCCeEEcCCCCCcccCCceEEEecCCCccccccccCcCCCCCCccchhhHHHHHHHHHHHHhccccccEEEEE
Q 016192 228 TIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVS 307 (393)
Q Consensus 228 t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYGg~a~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~cevQls 307 (393)
|+||||||||||||||+||+|||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||
T Consensus 245 t~~~INPtGrFViGGP~gDaGLTGRKIIVDTYGG~~~HGGGAFSGKDptKVDRSaAYaAR~vAKniVAAGLA~rc~VQls 324 (407)
T 3s82_A 245 TRLLVNPTGKFVVGGPMGDAGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAMRWVAKNIVAAGLAERVEVQVA 324 (407)
T ss_dssp CEEEESTTCCCCSCTTTTSEEETTSCTTTTTTTTSSCCCSCCCTTBCTTCHHHHHHHHHHHHHHHHHHTTSCSEEEEEEE
T ss_pred eEEEECCCCCeEECCCcccccccCceEEEecCCCcccCCCccccCCCccccchhHHHHHHHHHHHHHHcccccceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccceeEEEEecCCCCCCHHHHHHHHHHhCCCChHhHHhhhccccccccccccccccccCCCCCCCCCccccccCc
Q 016192 308 YAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 387 (393)
Q Consensus 308 YAIG~a~Pvsi~V~tfgt~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~p~~~iY~~ta~yGHFGr~~~~fpWE~~dk~~ 387 (393)
||||+++|+||+||||||+++++++|.++|+++|||||++||++|+|++| ||++||+||||||++++||||+||+++
T Consensus 325 YAIGva~PvSi~V~tfGT~~~~~~~i~~~v~~~FdlrP~~Ii~~L~L~~P---iY~~tAaYGHFGR~~~~f~WE~~dkv~ 401 (407)
T 3s82_A 325 YAIGKAAPVGLFIETFGTATVDPVKIEKIVPEVFDLRPGAIIRDLDLLRP---IYAQTAAYGHFGRTDVELPWEQLNKVD 401 (407)
T ss_dssp ECTTCSSCSEEEEECTTCCSSCHHHHHHHHHHHSCCSHHHHHHHTTCSSS---CCGGGSSSCSSSCSSSCCGGGCCTTHH
T ss_pred EecccccceEEEEEeCCCCCCCHHHHHHHHHHhcCCCHHHHHHHcCCCCC---cchhhcCcCCCCCCCCCCCccCCcHHH
Confidence 99999999999999999999999999999999999999999999999999 999999999999998899999999988
Q ss_pred ccC
Q 016192 388 WEK 390 (393)
Q Consensus 388 ~~~ 390 (393)
.|+
T Consensus 402 ~Lk 404 (407)
T 3s82_A 402 DLK 404 (407)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 4
>2p02_A S-adenosylmethionine synthetase isoform type-2; structural genomics, structural genomics consortium, SGC, transferase; HET: SAM; 1.21A {Homo sapiens} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1qm4_A 1o92_A* 1o93_A* 1o90_A* 1o9t_A 2obv_A*
Probab=100.00 E-value=5.5e-188 Score=1384.86 Aligned_cols=379 Identities=66% Similarity=1.082 Sum_probs=368.2
Q ss_pred cceeeccccCCCCCchhhhhhHHHHHHHHhhcCCCCcEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCCCCC
Q 016192 3 TFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDD 82 (393)
Q Consensus 3 ~~lfTSESV~~GHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~V~i~GEitt~a~vd~~~ivR~~l~~IGY~~~~ 82 (393)
+||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++||+++|||++|++|||++++
T Consensus 18 ~~lFTSESVseGHPDKicDqISDAILDa~L~~Dp~arVAcEt~v~tg~v~v~GEitt~a~vd~~~ivR~~i~~IGY~~~~ 97 (396)
T 2p02_A 18 TFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAAVDYQKVVREAVKHIGYDDSS 97 (396)
T ss_dssp EEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEETTEEEEEEEEECSCCCCHHHHHHHHHHHHTCEEGG
T ss_pred ceEEeeccccCCCCcHHHHHHHHHHHHHHHhhCCCCcEEEEEEeecCeEEEEEEEcccccCCHHHHHHHHHHHhCCCCcc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEEeecCCChhhhcccCCCCCCCCCCCCCCcceeeEeEecCCCCCCCCchHHHHHHHHHHHHHHHHcCCCC
Q 016192 83 VGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCS 162 (393)
Q Consensus 83 ~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~l~~~l~~~Rk~g~~~ 162 (393)
+|||+++|+|++.|++|||||+|||+... ..+++|||||||||||||||||+||||||+|||+|++||+++||+|++|
T Consensus 98 ~gfd~~tc~Vl~~i~~QSpDIaqGV~~~~--~~~e~GAGDQGiMFGYAt~ET~elMPlpi~lAh~L~~rla~~Rk~g~l~ 175 (396)
T 2p02_A 98 KGFDYKTCNVLVALEQQSPDIAQGVHLDR--NEEDIGAGDQGLMFGYATDETEECMPLTIVLAHKLNAKLAELRRNGTLP 175 (396)
T ss_dssp GTEETTTSEEEEEEECCCHHHHHHHTTTC--CGGGCCBSSCEEEEEEEETTSTTSSCHHHHHHHHHHHHHHHHHHTTSST
T ss_pred cCCCCCceEEEEecccCChhhhhcccccc--cccccCCCCcceEEEEeCCCCcccCChHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999531 1136999999999999999999999999999999999999999999999
Q ss_pred cccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhccccCCCCCCCCCcEEEECCCCCeEEcC
Q 016192 163 WLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGG 242 (393)
Q Consensus 163 ~l~pD~KtQVtv~Y~~~~g~~~p~rv~tiviS~QH~~~v~~~~l~~~i~e~vi~~v~~~~~~~~~t~~~INPtG~FviGG 242 (393)
||||||||||||+|++++|.|+|+||++||||+||++++++++||++|+|+||+||+|++|++++|+|||||||+|||||
T Consensus 176 ~lrPD~KtQVTveY~~~~~~~~P~rv~tvviS~QH~~~v~~~~lr~~i~e~vi~~v~p~~~ld~~t~~~INPtGrFviGG 255 (396)
T 2p02_A 176 WLRPDSKTQVTVQYMQDRGAVLPIRVHTIVISVQHDEEVCLDEMRDALKEKVIKAVVPAKYLDEDTIYHLQPSGRFVIGG 255 (396)
T ss_dssp TEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEECSSCCHHHHHHHHHHTTHHHHSCGGGCCTTCEEEESTTSCCCSCG
T ss_pred ccCCCcceEEEEEEEcCCCCcCceEEeEEEEeecCCCCCCHHHHHHHHHHHHHHHhcChhhcCCCeEEEECCCCCcccCC
Confidence 99999999999999854466789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCceEEEecCCCccccccccCcCCCCCCccchhhHHHHHHHHHHHHhccccccEEEEEEEeccccceeEEEEe
Q 016192 243 PHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDS 322 (393)
Q Consensus 243 P~~DtGLTGRKiiVDTYGg~a~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~cevQlsYAIG~a~Pvsi~V~t 322 (393)
|+||+|||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+||+|||
T Consensus 256 P~gDaGLTGRKIIVDTYGG~~~HGGGAFSGKDptKVDRSaAYaAR~vAKniVaAGLA~rc~VQlsYAIGva~PvSi~Vdt 335 (396)
T 2p02_A 256 PQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKGGLCRRVLVQVSYAIGVSHPLSISIFH 335 (396)
T ss_dssp GGTSCEETTSCTTTTTTTTSSCCCSCCCTTBCTTCHHHHHHHHHHHHHHHHHHTTSCSEEEEEEEECBTCCSCSEEEEEC
T ss_pred CcccccccCceEEEEcCCCccCCCCcccCCCCccccchhhHHHHHHHHHHHHhhccCCeeEEEEEeecCcccccEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHhCCCChHhHHhhhccccccccccccccccccCCCCCCCCCccccccCcc
Q 016192 323 YGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW 388 (393)
Q Consensus 323 fgt~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~p~~~iY~~ta~yGHFGr~~~~fpWE~~dk~~~ 388 (393)
|||+++++++|.++|+++|||||++||++|+|++| ||++||+||||||+ +||||++|+++.
T Consensus 336 fGT~~~~~~~i~~~v~~~FdlrP~~Ii~~L~L~~P---iY~~tAaYGHFGr~--~fpWE~~d~~~~ 396 (396)
T 2p02_A 336 YGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKKP---IYQRTAAYGHFGRD--SFPWEVPKKLKY 396 (396)
T ss_dssp TTCCSSCHHHHHHHHHHHCCCCHHHHHHHHTTTSS---CGGGGSSSCSSSST--TCGGGSCCCCCC
T ss_pred cCCCCCCHHHHHHHHHHHcCCCHHHHHHhcCCCCC---cchhhccccCcCCC--CCCcccccccCC
Confidence 99999999999999999999999999999999999 99999999999997 699999999863
No 5
>1p7l_A S-adenosylmethionine synthetase; AMPPNP, SAM, transferase; HET: SAM ANP PPK; 2.50A {Escherichia coli} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1fug_A 1mxb_A* 1mxc_A* 1mxa_A* 1rg9_A* 1xra_A 1xrb_A 1xrc_A
Probab=100.00 E-value=1.2e-187 Score=1378.04 Aligned_cols=376 Identities=57% Similarity=0.919 Sum_probs=367.4
Q ss_pred cceeeccccCCCCCchhhhhhHHHHHHHHhhcCCCCcEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCCCCC
Q 016192 3 TFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDD 82 (393)
Q Consensus 3 ~~lfTSESV~~GHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~V~i~GEitt~a~vd~~~ivR~~l~~IGY~~~~ 82 (393)
+||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++||+++|||++|++|||++++
T Consensus 2 ~~lFTSESVseGHPDKicDqISDAILDa~L~~Dp~arVAcEt~v~tg~v~v~GEitt~a~vd~~~ivR~~i~~IGY~~~~ 81 (383)
T 1p7l_A 2 KHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSD 81 (383)
T ss_dssp CEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEETTEEEEEEEEECSCCCCHHHHHHHHHHHHTCEEGG
T ss_pred CceeeccccCCCCCcHHHHHHHHHHHHHHHhhCCCCcEEEEEEeecCcEEEEEEEeccccCCHHHHHHHHHHHhCCCCcc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEEeecCCChhhhcccCCCCCCCCCCCCCCcceeeEeEecCCCCCCCCchHHHHHHHHHHHHHHHHcCCCC
Q 016192 83 VGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCS 162 (393)
Q Consensus 83 ~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~l~~~l~~~Rk~g~~~ 162 (393)
+|||+++|+|++.|++|||||+|||+... .+++|||||||||||||||||+||||||+|||+|++||+++||+|++|
T Consensus 82 ~gfd~~tc~v~~~i~~QSpdIa~GV~~~~---~~e~GAGDQGiMFGYA~~ET~e~MPlpi~lAh~L~~rl~~~Rk~g~~~ 158 (383)
T 1p7l_A 82 MGFDANSCAVLSAIGKQSPDINQGVDRAD---PLEQGAGDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLP 158 (383)
T ss_dssp GTEETTTSEEEEEEECCCHHHHHHHSCSS---TTTCCCSSCEEEEEEEETTSTTSCCHHHHHHHHHHHHHHHHHHTTSST
T ss_pred cCcCCCceEEEEecccCChHHhhhcCccc---ccccccCCCceeeEEecCCCcccCchHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999531 236999999999999999999999999999999999999999999999
Q ss_pred cccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhccccCCCCCCCCCcEEEECCCCCeEEcC
Q 016192 163 WLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGG 242 (393)
Q Consensus 163 ~l~pD~KtQVtv~Y~~~~g~~~p~rv~tiviS~QH~~~v~~~~l~~~i~e~vi~~v~~~~~~~~~t~~~INPtG~FviGG 242 (393)
||||||||||||+|++ | +|+||+|||||+||++++++++||++|+|+||+|++|++|++++|+|||||||+|||||
T Consensus 159 ~lrPD~KtQVtveY~~--~--~P~rv~tvviS~QH~~~v~~~~l~~~i~e~vi~~v~p~~~ld~~t~~~iNPtGrFviGG 234 (383)
T 1p7l_A 159 WLRPDAKSQVTFQYDD--G--KIVGIDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATKFFINPTGRFVIGG 234 (383)
T ss_dssp TEEEEEEEEEEEEEET--T--EEEEEEEEEEEEEECTTSCHHHHHHHHHHHTTTTTSCGGGCCTTCEEEESTTSCCCSCH
T ss_pred ccCCCccceEEEEEeC--C--ceeEEEEEEEEeecCCCCCHHHHHHHHHHHHHHHhcCccccCCCeEEEECCCCCcccCC
Confidence 9999999999999984 5 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCceEEEecCCCccccccccCcCCCCCCccchhhHHHHHHHHHHHHhccccccEEEEEEEeccccceeEEEEe
Q 016192 243 PHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDS 322 (393)
Q Consensus 243 P~~DtGLTGRKiiVDTYGg~a~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~cevQlsYAIG~a~Pvsi~V~t 322 (393)
|+||+|||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+||+|||
T Consensus 235 P~gDaGLTGRKIIVDTYGG~~~HGGGAFSGKDptKVDRSaAYaAR~vAKniVaAGLA~rc~VQlsYAIGva~PvSi~Vdt 314 (383)
T 1p7l_A 235 PMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVET 314 (383)
T ss_dssp HHHSCEETTCCTTTTTTTTSSCCCSCCCTTBCTTSHHHHHHHHHHHHHHHHHHTTSBSEEEEEEEECTTCCSCSEEEEEC
T ss_pred ccccccccCceEEEEccCCccCCCCcccCCCCCcccchhhhHHHHHHHHHHhhhccccceeeeeeeecccccccEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHhCCCChHhHHhhhccccccccccccccccccCCCCCCCCCccccccCcccC
Q 016192 323 YGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 390 (393)
Q Consensus 323 fgt~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~p~~~iY~~ta~yGHFGr~~~~fpWE~~dk~~~~~ 390 (393)
|||+++++++|.++|+++|||||++||++|+|++| ||++||+||||||+ +||||++|+++.|+
T Consensus 315 fGT~~~~~~~i~~~v~~~FdlrP~~Ii~~L~L~~P---iY~~tAaYGHFGr~--~fpWE~~d~~~~lk 377 (383)
T 1p7l_A 315 FGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLLHP---IYKETAAYGHFGRE--HFPWEKTDKAQLLR 377 (383)
T ss_dssp TTCBSSCHHHHHHHHHHHCCCSHHHHHHHHTCCSS---CCGGGGSSCSSSCT--TSTTTCCSHHHHHH
T ss_pred cCCCCCcHHHHHHHHHHHcCCCHHHHHHhcCCCCC---chhhhccccCcCCC--CCCccccchHHHHH
Confidence 99999999999999999999999999999999999 99999999999997 69999999988764
No 6
>4hpv_A S-adenosylmethionine synthase; structural genomics, PSI-biology; 2.21A {Sulfolobus solfataricus P2}
Probab=98.42 E-value=1.7e-06 Score=87.44 Aligned_cols=301 Identities=22% Similarity=0.269 Sum_probs=174.2
Q ss_pred CCCCCchhhhhhHHHHHHHH----hhc---------CCCCcEEEEEEe--------eeCeEEEEEEeeeee---e----c
Q 016192 12 NEGHPDKLCDQISDAVLDAC----LEQ---------DPESKVACETCT--------KTNMVMVFGEITTKA---K----V 63 (393)
Q Consensus 12 ~~GHPDKicDqISDaILDa~----L~~---------Dp~arVA~E~~v--------~~~~V~i~GEitt~a---~----v 63 (393)
+-||||-|||-||+++=-++ |++ |+---||-+..- ..=.|+++|..|+.. . +
T Consensus 29 GiGHPDsIcDgiaE~vS~aLs~~Yl~~fG~ILHHN~DK~llvgG~s~p~fGGG~vi~Pi~ii~~GRAT~~~~g~~~~~~i 108 (407)
T 4hpv_A 29 GLGHPDYIADAVAEEASRKLSLYYLKKYGVILHHNLDKTLVVGGQATPRFKGGDIIQPIYIIVAGRATTEVKTESGIDQI 108 (407)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHSSCCCEEEEEEEEECCEEEEETTEEEEEECEEEEEEEEECCEEECSSCEEEC
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHhCCeeccccccceEEccEeeccCCCceeeeeEEEEEecceEEEECCccccccc
Confidence 67999999999999875443 322 443344444332 233578888887653 2 7
Q ss_pred cHHHHHHHH----HHh-hCCCCCCCCCCCCc-eEEEEeecCCChhhhcccCCCCCCCCCCCCCCcceeeEeEecCCCCCC
Q 016192 64 DYEKIVRDT----CRS-IGFVSDDVGLDADH-CKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEF 137 (393)
Q Consensus 64 d~~~ivR~~----l~~-IGY~~~~~gfd~~~-~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~ 137 (393)
++.+|+.++ |++ +-+ +|.+. ..|...+.+-|+|+..-..+. ..--.|-|-....|||
T Consensus 109 Pv~~Ia~~AAk~~l~~~l~~------lD~e~~v~i~~~i~~GS~dL~~vf~r~----~~vp~ANDTS~gVGyA------- 171 (407)
T 4hpv_A 109 PVGTIIIESVKEWIRNNFRY------LDAERHVIVDYKIGKGSSDLVGIFEAS----KRVPLSNDTSFGVGFA------- 171 (407)
T ss_dssp CHHHHHHHHHHHHHHHHCSS------CCTTTSEEEEEEEECCEEECC----------CCCCBCSSCCEEEEEE-------
T ss_pred CHHHHHHHHHHHHHHHhccc------CCCCCcEEEEeeeCCCChhHHHHhcCC----CCCccccccCceeccC-------
Confidence 888876544 444 222 45443 577788999999988765431 1124799999999997
Q ss_pred CCchHHHHHHHHHHHHHHHH----cCCCCcccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCCh-HHHHHHHHH
Q 016192 138 MPLSHVLATKLGARLTEVRK----NSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTN-DEIAADLKE 212 (393)
Q Consensus 138 MPl~i~lAh~l~~~l~~~Rk----~g~~~~l~pD~KtQVtv~Y~~~~g~~~p~rv~tiviS~QH~~~v~~-~~l~~~i~e 212 (393)
||+- .-+|+..+++.=. ...+|+.+.|-|.-- ++ +. ..+. +.|..-.|+ .|-.+.+. -+.++.+++
T Consensus 172 -PlS~--~E~~Vl~~E~~Lns~~~k~~~P~~GeDIKVMG-~R--~g-~~i~-LTvA~a~v~-r~v~~~~~Y~~~K~~v~~ 242 (407)
T 4hpv_A 172 -PLTK--LEKLVYETERHLNSKQFKAKLPEVGEDIKVMG-LR--RG-NEVD-LTIAMATIS-ELIEDVNHYINVKEQVRN 242 (407)
T ss_dssp -SCCH--HHHHHHHHHHHHHSHHHHHHCTTEEEEEEEEE-EE--ET-TEEE-EEEEEEEEG-GGCCSHHHHHHHHHHHHH
T ss_pred -CCCH--HHHHHHHHHHHhcchhhhhhCcccCCceEEEE-Ee--eC-CeEE-EEEEhhhhh-hhhCCHHHHHHHHHHHHH
Confidence 4432 3334433333321 135899999999763 33 22 2111 222222222 33333221 234444444
Q ss_pred hhccccCCCCCCCC-CcEEEECCCCC-------eEEcCC---CCCcccCCceEEEecC-CCccccccccCcCCCCC-Ccc
Q 016192 213 HVIKPVIPEKYLDE-KTIFHLNPSGR-------FVIGGP---HGDAGLTGRKIIIDTY-GGWGAHGGGAFSGKDPT-KVD 279 (393)
Q Consensus 213 ~vi~~v~~~~~~~~-~t~~~INPtG~-------FviGGP---~~DtGLTGRKiiVDTY-Gg~a~HGGGAfSGKDpt-KVD 279 (393)
.|-+-+ . ++-+. +..++||..-. +++=|. +||.|.+||=.=|--- =++-|-+==|-+||.|- -|=
T Consensus 243 ~v~~~a-~-~~~~~~~v~v~vNt~D~~~~g~~YLTvtGTSAE~GDdG~VGRGNRvNGLITp~RPMSmEAaAGKNPv~HVG 320 (407)
T 4hpv_A 243 QILDLA-S-KIAPGYNVRVYVNTGDKIDKNILYLTVTGTSAEHGDDGMTGRGNRGVGLITPMRPMSLEATAGKNPVNHVG 320 (407)
T ss_dssp HHHHHH-H-HHCTTSEEEEEECTTCBGGGTBCCEESSSCGGGGTCCEETTSSCCTTSSBCTTSCCCCCCCTTSCTTTCHH
T ss_pred HHHHHH-H-hcCCCCceEEEEecCCCcCCCceEEEecccccccCCCcccccCcccccccCCCCCccccccCCCCCccchh
Confidence 433311 1 12222 56789997532 233333 6899999994322100 12234455688999983 455
Q ss_pred chhhHHHHHHHHHHHHh--ccccccEEEEEEEeccc--cceeEEEEecCCCCCC----HHHHHHHHHHhC
Q 016192 280 RSGAYIVRQAAKSIVAN--GLARRCIVQVSYAIGVP--EPLSVFVDSYGTGKIP----DKEILKIVKESF 341 (393)
Q Consensus 280 RSaAY~AR~iAKniVaa--GlA~~cevQlsYAIG~a--~Pvsi~V~tfgt~~~~----~~~i~~~v~~~F 341 (393)
.-=..+|..||+.|++. | .++|.|.|-=-||.| +|....|...-...++ .+++++++.+..
T Consensus 321 KIYNvlA~~iA~~I~~~v~g-v~ev~V~llSqIG~PId~P~~a~v~v~~~~g~~~~~~~~~v~~I~~~~L 389 (407)
T 4hpv_A 321 KLYNVLANLIANKIAQEVKD-VKFSQVQVLGQIGRPIDDPLIANVDVITYDGKLTDETKNEISGIVDEML 389 (407)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-EEEEEEEEECCTTSBTTSCSEEEEEEEETTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCC-cceEEEEEecccCCCCCCCeEEEEEEecCCCCChHHHHHHHHHHHHHHH
Confidence 55678899999999984 4 578999999999975 7877776665444343 345566665544
No 7
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=44.75 E-value=95 Score=28.27 Aligned_cols=80 Identities=18% Similarity=0.277 Sum_probs=57.5
Q ss_pred eEEeEEEEeeecCCCCChHHHHHHHHHhhccc-cCCC---CCCCCCcEEEECCCCCeEEcCCCCCcccCCceEEEecCCC
Q 016192 186 VRVHTVLISTQHDETVTNDEIAADLKEHVIKP-VIPE---KYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGG 261 (393)
Q Consensus 186 ~rv~tiviS~QH~~~v~~~~l~~~i~e~vi~~-v~~~---~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYGg 261 (393)
++|.+||-|+.=.-.+++++|...+...--.| .+|. .+-+.++..+|-.||++++=|
T Consensus 13 ~~I~NvVas~~l~~~ldL~~la~~~~n~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~TG------------------- 73 (198)
T 1mp9_A 13 VNIENIVATVTLDQTLDLYAMERSVPNVEYDPDQFPGLIFRLESPKITSLIFKSGKMVVTG------------------- 73 (198)
T ss_dssp EEEEEEEEEEECCSCCCHHHHHHHSTTCBCCTTTCSSEEEEETTTTEEEEECTTSEEEEEC-------------------
T ss_pred eEEEEEEEEEEcCCcccHHHHHhhCCCCEECCccccceEEEcCCCceEEEEeCCCeEEEec-------------------
Confidence 68999999999999999999987665433333 2332 113467899999999999654
Q ss_pred ccccccccCcCCCCCCccchhhHHHHHHHHHHHHhcc
Q 016192 262 WGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGL 298 (393)
Q Consensus 262 ~a~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGl 298 (393)
.|--..+..++|.+++.|-..|.
T Consensus 74 --------------akS~e~a~~a~~~i~~~L~~lG~ 96 (198)
T 1mp9_A 74 --------------AKSTDELIKAVKRIIKTLKKYGM 96 (198)
T ss_dssp --------------CSSHHHHHHHHHHHHHHHHHTTC
T ss_pred --------------cCCHHHHHHHHHHHHHHHHHcCC
Confidence 12223577778888888878886
No 8
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=43.63 E-value=20 Score=26.87 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=31.6
Q ss_pred cHHHHHHHHHHhhCCCCCCCCCCCCceEEEEeecCCCh
Q 016192 64 DYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSP 101 (393)
Q Consensus 64 d~~~ivR~~l~~IGY~~~~~gfd~~~~~v~~~i~~QS~ 101 (393)
.+..|.-++..+.||++-...+|.++.+|.-.+..-|-
T Consensus 18 kfaailikvfaelgyndinvtwdgdtvtvegqleggsl 55 (62)
T 2gjh_A 18 KFAAILIKVFAELGYNDINVTWDGDTVTVEGQLEGGSL 55 (62)
T ss_dssp HHHHHHHHHHHHTTCCSCEEEECSSCEEEEEECCCCCC
T ss_pred HHHHHHHHHHHHhCcccceeEEcCCEEEEEeEEcCCcc
Confidence 35678889999999999988999999998887776553
No 9
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=32.79 E-value=75 Score=28.73 Aligned_cols=80 Identities=20% Similarity=0.352 Sum_probs=55.5
Q ss_pred eEEeEEEEeeecCCCCChHHHHHHHHHhhccc-cCCC---CCCCCCcEEEECCCCCeEEcCCCCCcccCCceEEEecCCC
Q 016192 186 VRVHTVLISTQHDETVTNDEIAADLKEHVIKP-VIPE---KYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGG 261 (393)
Q Consensus 186 ~rv~tiviS~QH~~~v~~~~l~~~i~e~vi~~-v~~~---~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYGg 261 (393)
++|.+||-|+.=...+++++|...+..---+| -+|. .+-+.++..+|-.+|++++=|
T Consensus 13 ~~i~NvVas~~l~~~ldL~~ia~~~~n~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~TG------------------- 73 (188)
T 2z8u_A 13 IKIVNVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVNCTG------------------- 73 (188)
T ss_dssp CEEEEEEEEEECCSSCCHHHHHHHSSCCC-------CEEEEETTTTEEEEECTTSEEEEEE-------------------
T ss_pred cEEEEEEEEEEeCCeeCHHHHHhhCCCCEECCCCcccEEEEcCCCcEEEEEeCCCeEEEec-------------------
Confidence 68999999999999999999987655432222 1232 123467889999999999654
Q ss_pred ccccccccCcCCCCCCccchhhHHHHHHHHHHHHhcc
Q 016192 262 WGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGL 298 (393)
Q Consensus 262 ~a~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGl 298 (393)
| |--..+..++|.+|+.|-..|.
T Consensus 74 -------A-------kS~e~a~~a~~~~~~~L~~lg~ 96 (188)
T 2z8u_A 74 -------A-------KSKEEAEIAIKKIIKELKDAGI 96 (188)
T ss_dssp -------E-------SSHHHHHHHHHHHHHHHHHTTC
T ss_pred -------C-------CCHHHHHHHHHHHHHHHHhcCC
Confidence 1 2223677778888988888886
No 10
>3kxy_T EXSE; type-three secretion system, TTSS, T3SS, chaperone-effector chaperone, effector, chaperone-transcription inhibitor COMP; 2.80A {Pseudomonas aeruginosa}
Probab=30.25 E-value=31 Score=26.11 Aligned_cols=21 Identities=33% Similarity=0.406 Sum_probs=15.1
Q ss_pred cCcCCCCCCccchhhHHHHHHHHHH
Q 016192 269 AFSGKDPTKVDRSGAYIVRQAAKSI 293 (393)
Q Consensus 269 AfSGKDptKVDRSaAY~AR~iAKni 293 (393)
|.-|.|-| |.|=+|||+|+|+
T Consensus 17 avrgedrs----svaglarwlarnv 37 (66)
T 3kxy_T 17 AVRGEDRS----SVAGLARWLARNV 37 (66)
T ss_dssp CCCCCCCS----CHHHHHHHHHHHT
T ss_pred HHhccchh----hHHHHHHHHHHhc
Confidence 44455544 4588999999998
No 11
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=29.02 E-value=23 Score=28.92 Aligned_cols=38 Identities=21% Similarity=0.312 Sum_probs=29.1
Q ss_pred cHHHHHHHHHHhhCCCCCCCCCCCCceEEEEeecCCCh
Q 016192 64 DYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSP 101 (393)
Q Consensus 64 d~~~ivR~~l~~IGY~~~~~gfd~~~~~v~~~i~~QS~ 101 (393)
-+..|.-++..+.||++-...||.++.+|.-.+..-|.
T Consensus 62 kfaailikvfaelgyndinvtfdgdtvtvegqleggsl 99 (106)
T 1qys_A 62 KFAAILIKVFAELGYNDINVTFDGDTVTVEGQLEGGSL 99 (106)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEETTEEEEEEEC-----
T ss_pred HHHHHHHHHHHHhCCcceeEEEcCCeEEEEeEEcCCcc
Confidence 45678889999999999999999999998887766553
No 12
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=28.27 E-value=48 Score=29.81 Aligned_cols=81 Identities=17% Similarity=0.249 Sum_probs=56.5
Q ss_pred eeEEeEEEEeeecCCCCChHHHHHHHHHhhccc-cCCC---CCCCCCcEEEECCCCCeEEcCCCCCcccCCceEEEecCC
Q 016192 185 PVRVHTVLISTQHDETVTNDEIAADLKEHVIKP-VIPE---KYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYG 260 (393)
Q Consensus 185 p~rv~tiviS~QH~~~v~~~~l~~~i~e~vi~~-v~~~---~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYG 260 (393)
.++|++||-|+.=...+++++|...+..---+| -+|. .+-+.++..+|-.+|++++=|
T Consensus 8 ~~~I~NvVas~~l~~~ldL~~ia~~~~n~eY~P~~fpgli~Rl~~P~~t~lIF~SGKiv~TG------------------ 69 (182)
T 1ais_A 8 KLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVVTG------------------ 69 (182)
T ss_dssp EEEEEEEEEEEECCSCCCHHHHTTTSTTCBCCTTTCSSEEEECSSSCCEEEECTTSEEEEEE------------------
T ss_pred ceEEEEEEEEEEcCCeeCHHHHHhhCCCcEECCCccccEEEEcCCCcEEEEEeCCCeEEEec------------------
Confidence 468999999999999999999876544322222 1232 122467889999999999655
Q ss_pred CccccccccCcCCCCCCccchhhHHHHHHHHHHHHhcc
Q 016192 261 GWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGL 298 (393)
Q Consensus 261 g~a~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGl 298 (393)
.|--..+.-++|.+++.|-..|+
T Consensus 70 ---------------akS~~~~~~a~~~i~~~L~~lG~ 92 (182)
T 1ais_A 70 ---------------AKSVQDIERAVAKLAQKLKSIGV 92 (182)
T ss_dssp ---------------ESSHHHHHHHHHHHHHHHHHTTC
T ss_pred ---------------CCCHHHHHHHHHHHHHHHHHcCC
Confidence 12223566778888888888886
No 13
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A
Probab=27.88 E-value=40 Score=33.76 Aligned_cols=25 Identities=8% Similarity=0.190 Sum_probs=21.5
Q ss_pred CCCCchHHHHHHHHHHHHHHHHcCC
Q 016192 136 EFMPLSHVLATKLGARLTEVRKNST 160 (393)
Q Consensus 136 ~~MPl~i~lAh~l~~~l~~~Rk~g~ 160 (393)
.=+|.|+.+||+|++++..+..-+.
T Consensus 385 v~vPap~~YAhklA~l~~~~~~~~~ 409 (427)
T 2w42_A 385 RNLPVTVNYPKLVAGIIANVNRYGG 409 (427)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCcCcchHhHHHHHHHHhhhhhcCC
Confidence 4589999999999999999987544
No 14
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=26.04 E-value=46 Score=27.13 Aligned_cols=28 Identities=21% Similarity=0.196 Sum_probs=21.7
Q ss_pred CCCCCCHHHHHHHHHHhCCCChHhHHhh
Q 016192 324 GTGKIPDKEILKIVKESFDFRPGMMTIN 351 (393)
Q Consensus 324 gt~~~~~~~i~~~v~~~Fdl~p~~Ii~~ 351 (393)
|...++-+.|.+.|.+.|+++|..|...
T Consensus 1 ~~~~it~~~I~~~Va~~f~v~~~dl~s~ 28 (101)
T 3pvv_A 1 GPHMISAATIMAATAEYFDTTVEELRGP 28 (101)
T ss_dssp ----CCHHHHHHHHHHHTTCCHHHHHSS
T ss_pred CCCCCCHHHHHHHHHHHHCCCHHHHhCC
Confidence 3446888999999999999999998744
Done!