Query 016195
Match_columns 393
No_of_seqs 242 out of 2980
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 09:30:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016195.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016195hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fc6_A Photosystem II D1 prote 100.0 1.6E-48 5.6E-53 392.2 33.5 286 99-392 3-303 (388)
2 1k32_A Tricorn protease; prote 100.0 2.9E-37 9.8E-42 343.3 20.9 268 100-392 659-946 (1045)
3 3k50_A Putative S41 protease; 100.0 1.3E-34 4.4E-39 291.8 21.9 262 106-392 17-310 (403)
4 3dor_A Protein CT_858, CPAF; m 99.7 3E-15 1E-19 154.6 25.6 225 102-346 8-360 (583)
5 1j7x_A IRBP, interphotorecepto 99.7 3.3E-17 1.1E-21 159.1 10.4 106 287-392 106-222 (302)
6 2kom_A Partitioning defective 99.4 2.4E-13 8.2E-18 114.3 8.0 101 156-256 14-120 (121)
7 2koj_A Partitioning defective 99.4 9.7E-13 3.3E-17 108.4 8.2 96 162-257 1-102 (111)
8 2byg_A Channel associated prot 99.4 7.4E-13 2.5E-17 110.7 6.7 98 157-256 11-114 (117)
9 2r4h_A Membrane-associated gua 99.4 1E-12 3.5E-17 108.8 7.2 98 156-256 10-109 (112)
10 2edz_A PDZ domain-containing p 99.3 2.4E-13 8.3E-18 112.8 0.3 93 151-256 5-97 (114)
11 2dm8_A INAD-like protein; PDZ 99.2 3.5E-12 1.2E-16 105.8 4.5 95 160-257 7-104 (116)
12 3l4f_D SH3 and multiple ankyri 99.2 1.6E-11 5.6E-16 104.7 7.9 104 151-256 11-124 (132)
13 2jxo_A Ezrin-radixin-moesin-bi 99.2 9.9E-12 3.4E-16 100.0 5.8 91 160-256 3-93 (98)
14 2v90_A PDZ domain-containing p 99.2 5.4E-11 1.8E-15 95.3 9.9 78 180-258 14-91 (96)
15 1qau_A Neuronal nitric oxide s 99.2 1E-10 3.4E-15 96.4 11.2 86 176-266 9-95 (112)
16 2iwq_A Multiple PDZ domain pro 99.2 3.2E-11 1.1E-15 101.6 7.9 98 157-256 14-119 (123)
17 1wg6_A Hypothetical protein (r 99.2 6.3E-12 2.1E-16 106.5 3.5 98 159-256 10-122 (127)
18 2he4_A Na(+)/H(+) exchange reg 99.2 1.2E-10 4.1E-15 92.1 10.8 73 180-256 15-87 (90)
19 1v6b_A Harmonin isoform A1; st 99.2 1.4E-11 4.8E-16 103.0 5.5 95 159-256 3-107 (118)
20 3suz_A Amyloid beta A4 precurs 99.2 4.3E-12 1.5E-16 127.2 2.5 140 102-257 152-295 (388)
21 1r6j_A Syntenin 1; PDZ, membra 99.2 6.5E-11 2.2E-15 92.8 8.3 69 176-254 12-80 (82)
22 1wfv_A Membrane associated gua 99.2 6.9E-12 2.4E-16 101.6 2.8 92 163-257 2-97 (103)
23 3b76_A E3 ubiquitin-protein li 99.2 5E-11 1.7E-15 99.8 7.4 98 158-256 12-113 (118)
24 2pkt_A PDZ and LIM domain prot 99.2 1.6E-10 5.5E-15 91.5 9.8 75 180-257 13-87 (91)
25 2uzc_A Human pdlim5, PDZ and L 99.1 1.9E-10 6.4E-15 90.5 9.9 74 180-256 13-86 (88)
26 2pa1_A PDZ and LIM domain prot 99.1 2E-10 7E-15 90.1 9.9 74 180-256 12-85 (87)
27 1n7e_A AMPA receptor interacti 99.1 1.7E-10 5.9E-15 92.5 9.5 76 179-257 15-91 (97)
28 1g9o_A NHE-RF; PDZ domain, com 99.1 2.4E-10 8.2E-15 90.4 9.6 74 180-256 14-87 (91)
29 2jre_A C60-1 PDZ domain peptid 99.1 6.1E-11 2.1E-15 97.0 6.4 94 161-256 2-104 (108)
30 4amh_A Disks large homolog 1; 99.1 5.4E-10 1.8E-14 91.4 11.9 88 179-267 12-104 (106)
31 2db5_A INAD-like protein; PDZ 99.1 9E-11 3.1E-15 99.2 7.3 79 177-256 34-115 (128)
32 2vz5_A TAX1-binding protein 3; 99.1 3.3E-10 1.1E-14 97.5 10.8 80 178-257 36-125 (139)
33 2q3g_A PDZ and LIM domain prot 99.1 2.4E-10 8.1E-15 90.2 9.0 74 180-256 13-86 (89)
34 1wi4_A Synip, syntaxin binding 99.1 1.1E-10 3.7E-15 96.2 7.2 96 161-256 6-105 (109)
35 2i04_A Membrane-associated gua 99.1 4.3E-10 1.5E-14 87.8 9.5 73 180-254 11-85 (85)
36 2vsp_A PDZ domain-containing p 99.1 6.5E-11 2.2E-15 93.9 4.8 73 181-257 15-87 (91)
37 1x5q_A LAP4 protein; PDZ domai 99.1 4.4E-10 1.5E-14 92.2 10.0 78 176-257 22-106 (110)
38 2w4f_A Protein LAP4; structura 99.1 4E-10 1.4E-14 90.1 9.3 80 177-257 11-94 (97)
39 3cbz_A Dishevelled-2; PDZ doma 99.1 3.1E-10 1.1E-14 93.2 8.4 78 180-257 17-97 (108)
40 1q3o_A Shank1; PDZ, GKAP, pept 99.1 2.1E-10 7.2E-15 94.1 7.2 79 177-256 16-104 (109)
41 1m5z_A GRIP, AMPA receptor int 99.1 7.1E-10 2.4E-14 87.7 9.9 73 179-255 18-90 (91)
42 2vwr_A Ligand of NUMB protein 99.1 5.4E-10 1.8E-14 89.2 9.2 75 179-257 15-90 (95)
43 3khf_A Microtubule-associated 99.1 7.8E-10 2.7E-14 88.9 10.1 77 180-257 13-94 (99)
44 1kwa_A Hcask/LIN-2 protein; PD 99.1 2.6E-10 8.9E-15 90.1 7.1 74 178-256 11-85 (88)
45 2dmz_A INAD-like protein; PDZ 99.1 1.9E-10 6.6E-15 97.2 6.8 80 177-257 24-107 (129)
46 2djt_A Unnamed protein product 99.1 2.5E-10 8.7E-15 92.7 7.2 80 177-257 19-99 (104)
47 3sfj_A TAX1-binding protein 3; 99.1 1.2E-09 4.2E-14 88.5 11.3 79 177-255 16-104 (104)
48 2qkv_A Inactivation-NO-after-p 99.1 2.9E-10 9.9E-15 91.2 7.4 74 177-256 17-91 (96)
49 3r0h_A INAD, inactivation-NO-a 99.1 6E-10 2.1E-14 101.1 10.4 108 158-265 6-117 (206)
50 2fcf_A Multiple PDZ domain pro 99.1 1E-09 3.4E-14 88.8 10.6 89 160-257 4-100 (103)
51 2qg1_A Multiple PDZ domain pro 99.1 5E-10 1.7E-14 88.7 8.6 75 178-256 14-89 (92)
52 3bpu_A Membrane-associated gua 99.1 4E-10 1.4E-14 88.7 7.9 73 179-256 13-86 (88)
53 2iwo_A Multiple PDZ domain pro 99.0 2.4E-10 8.2E-15 95.8 6.9 81 176-257 32-114 (120)
54 2yuy_A RHO GTPase activating p 99.0 2.4E-11 8.4E-16 102.5 0.8 92 160-257 26-121 (126)
55 2jil_A GRIP1 protein, glutamat 99.0 5.3E-10 1.8E-14 89.5 8.5 78 179-257 13-93 (97)
56 1ihj_A INAD; intermolecular di 99.0 1E-09 3.4E-14 88.0 10.1 78 178-256 15-97 (98)
57 2opg_A Multiple PDZ domain pro 99.0 1.3E-09 4.6E-14 87.3 10.6 76 179-257 14-91 (98)
58 2eaq_A LIM domain only protein 99.0 4E-10 1.4E-14 89.0 7.4 73 179-256 16-89 (90)
59 3r68_A Na(+)/H(+) exchange reg 99.0 5.6E-10 1.9E-14 88.9 8.3 74 179-256 15-88 (95)
60 2dls_A PDZ-rhogef, RHO guanine 99.0 6E-10 2E-14 88.8 8.3 72 179-258 18-89 (93)
61 2iwn_A Multiple PDZ domain pro 99.0 6.1E-10 2.1E-14 88.8 8.3 77 177-256 12-93 (97)
62 1uep_A Membrane associated gua 99.0 2.1E-10 7.3E-15 93.2 5.4 77 178-256 18-96 (103)
63 2d90_A PDZ domain containing p 99.0 2.9E-10 9.8E-15 92.1 6.1 76 178-257 15-90 (102)
64 1i16_A Interleukin 16, LCF; cy 99.0 1.2E-10 4E-15 98.9 4.0 79 178-256 38-118 (130)
65 1b8q_A Protein (neuronal nitri 99.0 1.8E-10 6E-15 97.2 4.9 86 176-266 16-102 (127)
66 2eeh_A PDZ domain-containing p 99.0 1.3E-09 4.4E-14 87.9 9.6 74 180-257 22-95 (100)
67 2f5y_A Regulator of G-protein 99.0 8.2E-10 2.8E-14 87.6 8.3 71 179-256 13-83 (91)
68 2yt7_A Amyloid beta A4 precurs 99.0 3.7E-10 1.2E-14 91.5 6.3 77 180-256 21-99 (101)
69 3o46_A Maguk P55 subfamily mem 99.0 1.1E-09 3.7E-14 87.1 8.8 73 180-256 15-88 (93)
70 2fe5_A Presynaptic protein SAP 99.0 1.4E-09 4.7E-14 86.5 9.4 76 180-256 14-93 (94)
71 1ueq_A Membrane associated gua 99.0 1.1E-09 3.8E-14 91.9 9.2 77 178-256 28-106 (123)
72 3ngh_A PDZ domain-containing p 99.0 3.1E-10 1.1E-14 92.4 5.6 58 198-256 28-85 (106)
73 2vsv_A Rhophilin-2; scaffold p 99.0 8.4E-10 2.9E-14 91.1 8.3 71 180-256 34-104 (109)
74 1rgw_A ZAsp protein; PDZ, cyph 99.0 7.4E-10 2.5E-14 86.4 7.5 74 180-256 11-84 (85)
75 2d92_A INAD-like protein; PDZ 99.0 1E-09 3.4E-14 90.0 8.4 77 180-256 26-105 (108)
76 2q9v_A Membrane-associated gua 99.0 8.5E-10 2.9E-14 87.1 7.6 75 180-256 13-89 (90)
77 1wi2_A Riken cDNA 2700099C19; 99.0 9.5E-10 3.2E-14 89.4 8.0 75 178-256 25-99 (104)
78 1vb7_A PDZ and LIM domain 2; P 99.0 5E-10 1.7E-14 89.3 6.2 75 180-257 16-90 (94)
79 2jik_A Synaptojanin-2 binding 99.0 2.2E-09 7.5E-14 86.6 10.0 77 180-257 18-98 (101)
80 2kjd_A Sodium/hydrogen exchang 99.0 7.9E-10 2.7E-14 93.1 7.6 77 178-257 18-94 (128)
81 3i4w_A Disks large homolog 4; 99.0 1.8E-09 6.3E-14 87.3 9.5 73 180-256 22-95 (104)
82 2awx_A Synapse associated prot 99.0 2.1E-09 7.3E-14 87.4 9.9 77 180-257 14-94 (105)
83 1ujd_A KIAA0559 protein; PDZ d 99.0 2.5E-09 8.6E-14 88.9 10.5 76 180-256 30-109 (117)
84 2ego_A General receptor for ph 99.0 1.9E-09 6.6E-14 86.2 9.4 77 178-255 14-95 (96)
85 1d5g_A Human phosphatase HPTP1 99.0 1.9E-09 6.6E-14 86.0 9.3 76 180-256 16-93 (96)
86 2i1n_A Discs, large homolog 3; 99.0 1.6E-09 5.4E-14 87.6 8.9 78 179-257 14-95 (102)
87 2eeg_A PDZ and LIM domain prot 99.0 5.8E-10 2E-14 89.0 6.1 74 180-256 18-91 (94)
88 2kpk_A Membrane-associated gua 99.0 1.5E-09 5E-14 92.0 9.0 75 180-256 29-105 (129)
89 1wha_A KIAA0147 protein, scrib 99.0 1.1E-09 3.7E-14 89.2 7.9 78 179-257 17-99 (105)
90 1qav_A Alpha-1 syntrophin (res 99.0 2.1E-09 7.3E-14 84.8 9.3 73 179-254 15-88 (90)
91 2o2t_A Multiple PDZ domain pro 99.0 6.9E-10 2.4E-14 92.1 6.6 103 145-257 6-111 (117)
92 1wif_A RSGI RUH-020, riken cDN 99.0 5.8E-10 2E-14 94.4 5.9 75 176-255 34-110 (126)
93 1wfg_A Regulating synaptic mem 99.0 2.2E-09 7.6E-14 91.2 9.5 78 179-256 47-127 (131)
94 1wh1_A KIAA1095 protein; PDZ d 99.0 1.5E-09 5E-14 91.3 8.2 80 176-257 28-108 (124)
95 1wf7_A Enigma homologue protei 98.9 4.8E-10 1.6E-14 91.0 4.7 75 180-257 15-89 (103)
96 1v62_A KIAA1719 protein; struc 98.9 1.6E-09 5.4E-14 90.2 7.9 76 180-257 27-103 (117)
97 3id1_A Regulator of sigma E pr 98.9 2.9E-09 9.8E-14 85.4 9.1 67 198-266 4-71 (95)
98 2z17_A Pleckstrin homology SEC 98.9 6.1E-10 2.1E-14 90.5 5.2 90 160-252 9-103 (104)
99 1uez_A KIAA1526 protein; PDZ d 98.9 1.5E-09 5.1E-14 87.7 7.5 77 177-257 18-94 (101)
100 2ejy_A 55 kDa erythrocyte memb 98.9 1.5E-09 5.3E-14 87.6 7.5 73 178-255 22-95 (97)
101 3qe1_A Sorting nexin-27, G pro 98.9 2.7E-09 9.2E-14 87.0 9.0 77 180-257 17-103 (107)
102 3tsv_A Tight junction protein 98.9 2.2E-09 7.5E-14 90.4 8.6 73 180-256 39-112 (124)
103 3axa_A Afadin, nectin-3, prote 98.9 5.8E-09 2E-13 84.9 10.8 78 179-257 20-99 (106)
104 1v5l_A PDZ and LIM domain 3; a 98.9 6.2E-10 2.1E-14 90.4 4.9 75 180-257 15-89 (103)
105 2fne_A Multiple PDZ domain pro 98.9 3.6E-09 1.2E-13 88.2 9.6 77 180-257 36-114 (117)
106 1w9e_A Syntenin 1; cell adhesi 98.9 5.6E-09 1.9E-13 91.9 11.2 84 177-267 13-96 (166)
107 4e34_A Golgi-associated PDZ an 98.9 3.4E-09 1.2E-13 83.0 8.8 73 179-254 13-86 (87)
108 3kzd_A TIAM-1, T-lymphoma inva 98.9 4.5E-09 1.5E-13 84.4 9.5 71 180-254 20-90 (94)
109 1v5q_A GRIP1 homolog, glutamat 98.9 1.4E-09 4.7E-14 91.2 6.8 81 176-256 23-107 (122)
110 2dkr_A LIN-7 homolog B; LIN-7B 98.9 2.1E-09 7.1E-14 85.2 7.3 75 179-256 15-90 (93)
111 3nfk_A Tyrosine-protein phosph 98.9 3.6E-09 1.2E-13 86.2 8.8 77 177-255 26-107 (107)
112 3hpk_A Protein interacting wit 98.9 3.3E-09 1.1E-13 89.1 8.7 77 177-256 28-105 (125)
113 1va8_A Maguk P55 subfamily mem 98.9 4.4E-09 1.5E-13 86.9 9.1 73 179-257 36-109 (113)
114 2la8_A Inactivation-NO-after-p 98.9 3.1E-09 1.1E-13 87.0 8.1 73 178-256 12-85 (106)
115 1ujv_A Membrane associated gua 98.9 5.2E-09 1.8E-13 84.0 9.2 74 177-257 18-92 (96)
116 1x6d_A Interleukin-16; PDZ dom 98.9 2.3E-09 7.7E-14 89.3 7.1 81 176-257 23-104 (119)
117 3cyy_A Tight junction protein 98.9 5.4E-09 1.9E-13 82.5 9.0 59 197-256 24-83 (92)
118 1wf8_A Neurabin-I; PDZ domain, 98.9 6.3E-09 2.1E-13 84.9 9.6 78 179-257 19-101 (107)
119 4fgm_A Aminopeptidase N family 98.9 7E-09 2.4E-13 109.2 12.4 151 100-267 396-563 (597)
120 3qik_A Phosphatidylinositol 3, 98.9 3.2E-09 1.1E-13 86.1 7.6 71 179-254 27-99 (101)
121 2h2b_A Tight junction protein 98.9 5.7E-09 2E-13 85.0 9.2 79 177-257 16-98 (107)
122 2dc2_A GOPC, golgi associated 98.9 5.1E-09 1.7E-13 85.0 8.8 77 178-257 19-96 (103)
123 1um1_A KIAA1849 protein, RSGI 98.9 5.8E-09 2E-13 85.5 9.2 76 180-256 19-96 (110)
124 2dlu_A INAD-like protein; PDZ 98.9 2.6E-09 8.9E-14 87.7 7.1 73 180-257 26-99 (111)
125 1tp5_A Presynaptic density pro 98.9 6.2E-09 2.1E-13 86.5 9.3 73 180-256 25-98 (119)
126 1y7n_A Amyloid beta A4 precurs 98.9 2.7E-09 9.3E-14 84.8 6.8 67 179-255 23-89 (90)
127 3k1r_A Harmonin; protein-prote 98.9 6E-09 2E-13 94.1 9.8 74 179-256 95-168 (192)
128 2daz_A INAD-like protein; PDZ 98.9 2.8E-09 9.6E-14 89.5 7.0 77 179-257 35-112 (124)
129 2e7k_A Maguk P55 subfamily mem 98.9 7.1E-09 2.4E-13 82.3 8.9 72 178-256 16-88 (91)
130 3egg_C Spinophilin; PP1, serin 98.9 4.6E-09 1.6E-13 93.4 8.5 75 180-255 91-170 (170)
131 1whd_A RGS3, regulator of G-pr 98.9 6.4E-10 2.2E-14 89.9 2.6 73 177-256 23-95 (100)
132 2edp_A Fragment, shroom family 98.9 1.3E-09 4.4E-14 88.1 4.3 74 180-257 21-95 (100)
133 2l97_A HTRA, putative serine p 98.9 9.5E-09 3.2E-13 87.6 9.9 65 198-267 59-124 (134)
134 2kv8_A RGS12, regulator of G-p 98.9 1E-09 3.4E-14 85.4 3.5 70 180-256 13-82 (83)
135 2gzv_A PRKCA-binding protein; 98.9 7.6E-09 2.6E-13 85.8 9.0 77 177-256 33-110 (114)
136 2eei_A PDZ domain-containing p 98.8 1.5E-09 5.3E-14 88.3 4.2 75 179-257 18-92 (106)
137 1nf3_C PAR-6B; semi-CRIB motif 98.8 5.6E-09 1.9E-13 88.2 7.8 77 179-256 41-125 (128)
138 2eno_A Synaptojanin-2-binding 98.8 5.1E-09 1.8E-13 87.3 7.5 76 180-256 28-107 (120)
139 2cs5_A Tyrosine-protein phosph 98.8 2.6E-09 8.9E-14 88.9 5.6 79 176-256 23-106 (119)
140 2g5m_B Neurabin-2; spinophilin 98.8 6.3E-09 2.1E-13 85.7 7.9 78 179-257 14-96 (113)
141 1uit_A Human discs large 5 pro 98.8 1.1E-08 3.6E-13 84.9 9.3 73 180-257 30-102 (117)
142 2rcz_A Tight junction protein 98.8 1.1E-08 3.8E-13 78.5 8.7 59 197-256 22-81 (81)
143 2csj_A TJP2 protein; PDZ domai 98.8 1.9E-09 6.6E-14 89.5 4.7 94 161-256 3-104 (117)
144 3e17_A Tight junction protein 98.8 1E-08 3.5E-13 80.9 8.6 59 197-256 22-81 (88)
145 1uhp_A Hypothetical protein KI 98.8 9.9E-09 3.4E-13 83.7 8.7 77 179-256 18-101 (107)
146 1mfg_A ERB-B2 interacting prot 98.8 1.1E-08 3.7E-13 81.5 8.5 74 181-256 14-93 (95)
147 1uf1_A KIAA1526 protein; PDZ d 98.8 6.6E-09 2.2E-13 87.6 7.6 75 180-258 32-106 (128)
148 2zpm_A Regulator of sigma E pr 98.8 5.9E-09 2E-13 82.3 6.8 65 198-266 6-70 (91)
149 2lob_A Golgi-associated PDZ an 98.3 4.3E-10 1.5E-14 93.2 0.0 92 159-253 13-110 (112)
150 2d8i_A T-cell lymphoma invasio 98.8 8.7E-09 3E-13 85.6 7.9 72 181-256 30-101 (114)
151 3gsl_A Disks large homolog 4; 98.8 2.5E-08 8.4E-13 89.1 11.4 79 179-258 15-97 (196)
152 1uew_A Membrane associated gua 98.8 5.8E-09 2E-13 86.1 6.6 78 179-257 21-104 (114)
153 3i18_A LMO2051 protein; alpha- 98.8 1.8E-08 6.2E-13 81.4 9.3 64 198-266 9-73 (100)
154 1ufx_A KIAA1526 protein; PDZ d 98.8 3.7E-09 1.3E-13 86.0 5.2 78 179-257 16-98 (103)
155 2yub_A LIMK-2, LIM domain kina 98.8 7.2E-09 2.5E-13 86.6 6.8 60 197-257 45-106 (118)
156 1q7x_A PDZ2B domain of PTP-BAS 98.8 5.7E-09 2E-13 85.2 6.0 77 180-257 20-103 (108)
157 3gge_A PDZ domain-containing p 98.8 1.8E-08 6.2E-13 80.8 8.4 73 180-256 16-90 (95)
158 1uju_A Scribble; PDZ domain, c 98.8 4.9E-09 1.7E-13 86.1 4.6 79 177-256 18-104 (111)
159 2kjp_A Uncharacterized protein 98.8 2.8E-09 9.7E-14 84.9 3.0 65 198-267 3-68 (91)
160 3soe_A Membrane-associated gua 98.8 4.2E-08 1.4E-12 81.3 10.1 72 179-257 22-94 (113)
161 2ehr_A INAD-like protein; PDZ 98.8 1.7E-08 5.8E-13 83.6 7.7 79 178-257 25-111 (117)
162 2i6v_A General secretion pathw 98.8 2.6E-08 9E-13 78.2 8.4 57 198-256 21-78 (87)
163 1p1d_A PDZ45, glutamate recept 98.7 2.4E-08 8.3E-13 90.1 9.2 82 176-257 14-99 (196)
164 1y8t_A Hypothetical protein RV 98.7 4.1E-08 1.4E-12 95.5 11.4 81 179-266 228-310 (324)
165 2pzd_A Serine protease HTRA2; 98.7 2.9E-08 1E-12 81.6 8.8 65 198-268 37-101 (113)
166 2kl1_A YLBL protein; structure 98.7 1.2E-08 4E-13 81.6 6.1 65 198-267 7-72 (94)
167 1n7t_A 99-MER peptide of densi 98.7 1.3E-08 4.4E-13 82.3 6.2 71 181-256 22-101 (103)
168 2qbw_A PDZ-fibronectin fusion 98.7 4.3E-08 1.5E-12 88.0 10.3 68 197-266 25-95 (195)
169 1x5n_A Harmonin; PDZ domain, u 98.7 1.6E-08 5.5E-13 83.3 6.8 74 178-255 25-98 (114)
170 2qt5_A Glutamate receptor-inte 98.7 4.1E-08 1.4E-12 88.7 10.2 76 178-256 17-93 (200)
171 1vae_A Rhophilin 2, rhophilin, 98.7 4.4E-09 1.5E-13 86.9 3.0 72 179-256 25-96 (111)
172 3tsz_A Tight junction protein 98.7 1.7E-08 5.8E-13 101.1 7.5 73 180-256 19-92 (391)
173 1um7_A Synapse-associated prot 98.7 8.1E-09 2.8E-13 84.8 4.0 75 178-256 24-99 (113)
174 3rle_A Golgi reassembly-stacki 98.7 4.4E-08 1.5E-12 89.6 8.9 70 197-267 17-87 (209)
175 1z87_A Alpha-1-syntrophin; pro 98.7 2.1E-08 7.1E-13 95.1 6.6 78 177-257 86-164 (263)
176 1te0_A Protease DEGS; two doma 98.7 9.7E-08 3.3E-12 92.8 11.5 66 197-266 245-311 (318)
177 2p3w_A Probable serine proteas 98.7 6E-08 2.1E-12 79.6 8.4 64 198-267 37-100 (112)
178 2i4s_A General secretion pathw 98.6 8.6E-08 2.9E-12 78.0 8.4 57 198-256 39-96 (105)
179 3stj_A Protease DEGQ; serine p 98.6 9.9E-08 3.4E-12 93.9 10.3 65 198-266 265-330 (345)
180 2krg_A Na(+)/H(+) exchange reg 98.6 7E-09 2.4E-13 95.7 1.8 90 177-270 17-107 (216)
181 3r0h_A INAD, inactivation-NO-a 98.6 1E-07 3.4E-12 86.2 9.0 72 180-257 125-197 (206)
182 3gsl_A Disks large homolog 4; 98.6 1.6E-07 5.6E-12 83.7 10.0 76 181-257 112-191 (196)
183 2edv_A FERM and PDZ domain-con 98.6 2.3E-08 7.7E-13 80.1 3.2 70 180-257 21-90 (96)
184 3shw_A Tight junction protein 98.5 1.8E-07 6E-12 95.6 8.8 73 180-256 11-84 (468)
185 3rle_A Golgi reassembly-stacki 98.5 2.2E-07 7.6E-12 84.9 8.5 85 181-268 96-182 (209)
186 2xkx_A Disks large homolog 4; 98.5 2.2E-07 7.4E-12 100.0 9.5 88 179-267 69-162 (721)
187 1p1d_A PDZ45, glutamate recept 98.5 2.1E-07 7.3E-12 83.8 6.7 76 180-256 119-195 (196)
188 2qt5_A Glutamate receptor-inte 98.4 4E-07 1.4E-11 82.1 8.3 76 180-256 117-195 (200)
189 3pv2_A DEGQ; trypsin fold, PDZ 98.4 8.2E-07 2.8E-11 90.4 11.5 65 198-266 284-349 (451)
190 3qo6_A Protease DO-like 1, chl 98.4 4.5E-07 1.5E-11 89.2 8.6 65 198-266 253-329 (348)
191 2hga_A Conserved protein MTH13 98.4 6.4E-07 2.2E-11 75.4 8.1 55 198-256 27-82 (125)
192 1lcy_A HTRA2 serine protease; 98.4 8.5E-07 2.9E-11 86.4 10.2 63 198-266 258-320 (325)
193 4a8c_A Periplasmic PH-dependen 98.2 2.4E-06 8.3E-11 86.5 9.4 66 197-266 264-330 (436)
194 3pv2_A DEGQ; trypsin fold, PDZ 98.2 5.6E-06 1.9E-10 84.3 10.1 57 197-256 387-443 (451)
195 4a8c_A Periplasmic PH-dependen 98.1 6.9E-06 2.3E-10 83.2 10.1 65 197-266 364-428 (436)
196 2xkx_A Disks large homolog 4; 98.1 6E-06 2.1E-10 88.8 9.5 73 180-256 318-391 (721)
197 3num_A Serine protease HTRA1; 98.1 4.5E-07 1.5E-11 88.5 0.0 64 198-267 256-319 (332)
198 1ky9_A Protease DO, DEGP, HTRA 97.9 3.1E-06 1.1E-10 86.1 2.0 64 198-265 288-352 (448)
199 4fln_A Protease DO-like 2, chl 97.8 6.6E-05 2.3E-09 77.8 10.9 67 198-265 279-354 (539)
200 1ky9_A Protease DO, DEGP, HTRA 97.8 3.5E-06 1.2E-10 85.7 0.0 57 197-256 384-440 (448)
201 1w9e_A Syntenin 1; cell adhesi 97.7 6.5E-05 2.2E-09 65.6 7.2 63 180-252 100-162 (166)
202 3suz_A Amyloid beta A4 precurs 97.5 1.5E-05 5.2E-10 79.5 0.0 56 199-255 318-373 (388)
203 4fln_A Protease DO-like 2, chl 96.4 0.0049 1.7E-07 63.8 7.0 54 198-253 417-470 (539)
204 1y7o_A ATP-dependent CLP prote 83.3 0.92 3.1E-05 41.1 4.1 57 287-345 45-102 (218)
205 3viv_A 441AA long hypothetical 77.6 5.9 0.0002 36.1 7.5 64 286-350 7-71 (230)
206 1j7x_A IRBP, interphotorecepto 63.4 7.4 0.00025 36.6 4.9 57 102-165 5-65 (302)
207 1yg6_A ATP-dependent CLP prote 58.9 20 0.00067 31.4 6.6 61 287-349 26-87 (193)
208 2f6i_A ATP-dependent CLP prote 54.9 15 0.00052 32.9 5.2 48 298-346 49-96 (215)
209 2cby_A ATP-dependent CLP prote 48.7 23 0.00079 31.3 5.4 51 298-349 37-88 (208)
210 3bl4_A Uncharacterized protein 39.9 63 0.0022 26.3 6.2 57 286-346 18-77 (124)
211 3qwd_A ATP-dependent CLP prote 38.2 42 0.0014 29.7 5.3 61 287-349 27-88 (203)
212 3p2l_A ATP-dependent CLP prote 37.1 45 0.0015 29.4 5.3 57 287-345 30-87 (201)
213 2j3t_D Trafficking protein par 30.2 38 0.0013 30.5 3.6 47 209-255 52-101 (219)
214 1th8_B Anti-sigma F factor ant 29.4 70 0.0024 24.3 4.8 39 289-327 13-53 (116)
215 1tg6_A Putative ATP-dependent 28.4 78 0.0027 29.5 5.6 60 288-349 83-143 (277)
216 2kln_A Probable sulphate-trans 28.2 75 0.0026 25.1 4.9 41 287-327 14-58 (130)
217 3qf7_D MRE11; ABC-ATPase, ATPa 25.1 87 0.003 20.7 3.6 36 124-159 4-39 (50)
218 4dgh_A Sulfate permease family 23.3 1.1E+02 0.0038 24.1 5.0 44 287-331 19-63 (130)
219 2ka5_A Putative anti-sigma fac 22.8 69 0.0024 25.3 3.7 43 287-329 20-64 (125)
220 3t6o_A Sulfate transporter/ant 20.6 1.1E+02 0.0036 23.9 4.3 42 287-328 13-59 (121)
221 3ny7_A YCHM protein, sulfate t 20.4 80 0.0027 24.7 3.5 43 287-330 16-59 (118)
No 1
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Probab=100.00 E-value=1.6e-48 Score=392.24 Aligned_cols=286 Identities=27% Similarity=0.499 Sum_probs=247.0
Q ss_pred cChHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHhh-hcccChHHHHHHHHHHHHhcCCCceeecCHHHHhhhc--
Q 016195 99 KTNEGIVEEAWQIVNDSFLDTGRHRWTPQNWQRKREDILS-SSIQTRSKAHGIIKRMLASLGDPYTRFLSPAEFSKMA-- 175 (393)
Q Consensus 99 ~~~~~~f~~~W~~v~~~y~d~~~~~~~~~dW~~v~~~y~~-~~i~t~~~~~~~i~~ml~~L~D~ht~~~~~~e~~~~~-- 175 (393)
++.+++|+++|+.++++|+++. |++.||++++++|++ ..++++.+++.+|++|+++|+|||++|+++++++.+.
T Consensus 3 ~~~~~~f~~~w~~i~~~y~~~~---~~~~dW~~~~~~y~~~~~~~~~~~~~~~i~~ml~~L~D~hs~~~~~~~~~~~~~~ 79 (388)
T 1fc6_A 3 TSEQLLFLEAWRAVDRAYVDKS---FNGQSWFKLRETYLKKEPMDRRAQTYDAIRKMLAVLDDPFTRFLEPSRLAALRRG 79 (388)
T ss_dssp CHHHHHHHHHHHHHHHHCSCTT---GGGCCHHHHHHHHHHHSCCSSHHHHHHHHHHHHHTTCCTTCEEECHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHhccc---ccCccHHHHHHHhhhccCCCCHHHHHHHHHHHHHhcCCCcceecCHHHHHHHHHh
Confidence 4678999999999999999984 899999999999988 5677899999999999999999999999999987653
Q ss_pred -cCceeeeEEEEEEe-eCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEE
Q 016195 176 -RYDMSGIGINLREV-PDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVK 253 (393)
Q Consensus 176 -~~~~~glGi~~~~~-~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~ 253 (393)
++.+.|+|+.+... +.. + .++|..|.++|||++|||++||+|++|||+++.++...++..++++..|++|+|+|.
T Consensus 80 ~~g~~~giG~~~~~~~~~~-~--~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~ 156 (388)
T 1fc6_A 80 TAGSVTGVGLEITYDGGSG-K--DVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLH 156 (388)
T ss_dssp SSSSCBBCSEEEEECTTCS-S--CEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEE
T ss_pred hcCceEEEEEEEEEeecCC-C--cEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEE
Confidence 57788999999764 212 2 378999999999999999999999999999999998888999999999999999999
Q ss_pred eCCCC-ceEEEEEEeeccccCceeeeeee--------ecCCCceEEEEEeCccchhHHHHHHHHHHHHHHCCCCeEEEEc
Q 016195 254 HGNCG-PIESIQVQRQLVARTPVFYRLEH--------LDNGTTSVGYMRLKEFNALARKDLVTAMKRLQDMGASYFILDL 324 (393)
Q Consensus 254 r~~~~-~~~~v~l~r~~~~~~~v~~~~~~--------l~~~~~~igYI~i~~F~~~~~~~l~~al~~l~~~g~~~lIlDL 324 (393)
|++.. +.++++++|+.+...++.+.... .+..+++||||+|++|...+.+++.++|.+|+++++++|||||
T Consensus 157 r~g~~~~~~~~~l~r~~i~~~~v~~~~~~~~~~~~~~~~~~~~~igYi~i~~F~~~~~~~~~~~l~~l~~~~~~~lIlDL 236 (388)
T 1fc6_A 157 APGAPSNTRTLQLTRQKVTINPVTFTTCSNVAAAALPPGAAKQQLGYVRLATFNSNTTAAAQQAFTELSKQGVAGLVLDI 236 (388)
T ss_dssp ETTEEEEEEEEEEECBCCCCCCEEEEEECSCCGGGSCTTCSSSCEEEEEECCBSTTHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred eCCCCcceEEEEEEEceeecCceeeeeeccccccccccccCCCCEEEEEeCccCcchHHHHHHHHHHHHhCCCCeEEEEc
Confidence 98732 27889999988887888765421 1233578999999999999999999999999999999999999
Q ss_pred cCCCCCcHHHHHHHHhccccCCcEEEEEeccCcccceeeecCCCCC-CCCcEEEEEcCCCcccccceec
Q 016195 325 RDNLGGLVQAGIEIAKLFLNEGETITYTVGRDPQYQKTIVADNSPL-VTAPVIVCAPAFKMRQQLFFYI 392 (393)
Q Consensus 325 R~N~GG~l~~a~~ia~lfl~~g~~v~~~~~r~~~~~~~~~~~~~~~-~~~PlvVLVN~~TaSaAE~fa~ 392 (393)
|+|+||.+..+..++++|+++|. ++++.+|.+... .+...+... +++|++||||+.|+||||+|+.
T Consensus 237 R~N~GG~~~~~~~~~~~f~~~~~-i~~~~~r~~~~~-~~~~~~~~~~~~~pv~VLvn~~taSasEi~a~ 303 (388)
T 1fc6_A 237 RNNGGGLFPAGVNVARMLVDRGD-LVLIADSQGIRD-IYSADGNSIDSATPLVVLVNRGTASASEVLAG 303 (388)
T ss_dssp TTCCCBCHHHHHHHHHHHCSSSE-EEEEEETTEEEE-EEECCSCCSCSSSCEEEEECTTCCTHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcCCCc-EEEEecCCCcee-EEecCCccccCCCCEEEEeCCCCccHHHHHHH
Confidence 99999999999999999999885 668888876542 344444444 8999999999999999999973
No 2
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=2.9e-37 Score=343.34 Aligned_cols=268 Identities=15% Similarity=0.204 Sum_probs=215.5
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCCCCChhhH-HHHHHHHhhh--cccChHHHHHHHHHHHHhcCCCceeecCHHHHhhhcc
Q 016195 100 TNEGIVEEAWQIVNDSFLDTGRHRWTPQNW-QRKREDILSS--SIQTRSKAHGIIKRMLASLGDPYTRFLSPAEFSKMAR 176 (393)
Q Consensus 100 ~~~~~f~~~W~~v~~~y~d~~~~~~~~~dW-~~v~~~y~~~--~i~t~~~~~~~i~~ml~~L~D~ht~~~~~~e~~~~~~ 176 (393)
+..++|+++|+.++++|+++. ++.|| ++++++|++. .+.++++++.+|++|+++|+|+|++|. ++++.....
T Consensus 659 ~~~~~~~~~~~~~~~~y~~~~----~~~d~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~l~d~ht~~~-~~~~~~~~~ 733 (1045)
T 1k32_A 659 EFLQMYDEAWKLARDNYWNEA----VAKEISERIYEKYRNLVPLCKTRYDLSNVIVEMQGEYRTSHSYEM-GGTFTDKDP 733 (1045)
T ss_dssp HHHHHHHHHHHHHHHHCSCHH----HHHHHHHHHHHHHHTTGGGCCSHHHHHHHHHHHHHTTCCSCCCEE-CCCCCSCCC
T ss_pred HHHHHHHHHHHHHHHhhcCCC----CCCChHHHHHHHHHHhhcccCCHHHHHHHHHHHHHhcCCCcceEC-hhHhccccc
Confidence 567899999999999999983 68999 9999999864 467899999999999999999999665 566665556
Q ss_pred CceeeeEEEEEEeeCCCCeeEEEEEEEcCC--------ChhhhcC--CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCC
Q 016195 177 YDMSGIGINLREVPDANGVVTLKVLGLILD--------GPAHSAG--VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSET 246 (393)
Q Consensus 177 ~~~~glGi~~~~~~~~~G~~~l~V~~V~~g--------sPA~~AG--L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~ 246 (393)
+.+.|+|+.+.... + .++|..|+++ |||+++| |+ ||+|++|||+++..+. ++..+++++.|+
T Consensus 734 ~~~~g~G~~~~~~~---~--~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~~~~~~--~~~~~~~~~~g~ 805 (1045)
T 1k32_A 734 FRSGRIACDFKLDG---D--HYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGETVGAGS--NIYRVLSEKAGT 805 (1045)
T ss_dssp CCCCBCSEEEEEET---T--EEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEECBTTB--CHHHHHHTTTTS
T ss_pred cccceecEEEEEeC---C--EEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEEccchh--hHHHhhcCCCCC
Confidence 77889999998642 3 5889999998 9999999 99 9999999999999864 778899999999
Q ss_pred eEEEEEEeCCCCceEEEEEEeeccccCceeeee-------eeecCCCceEEEEEeCccchhHHHHHHHHHHHHHHCCCCe
Q 016195 247 FVTIEVKHGNCGPIESIQVQRQLVARTPVFYRL-------EHLDNGTTSVGYMRLKEFNALARKDLVTAMKRLQDMGASY 319 (393)
Q Consensus 247 ~V~Ltv~r~~~~~~~~v~l~r~~~~~~~v~~~~-------~~l~~~~~~igYI~i~~F~~~~~~~l~~al~~l~~~g~~~ 319 (393)
+|+|+|.|++ ++.+++++++.. ...++.|+. ...+..+++||||+|++|...+.++|.++|.++ +++++
T Consensus 806 ~v~l~v~r~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~igyi~~~~f~~~~~~~~~~~~~~~--~~~~~ 881 (1045)
T 1k32_A 806 SARIRLSGKG-GDKRDLMIDILD-DDRFIRYRSWVEANRRYVHERSKGTIGYIHIPDMGMMGLNEFYRLFINE--SSYQG 881 (1045)
T ss_dssp EEEEEEECSS-SCEEEEEEECBS-CCHHHHHHHHHHHHHHHHHHHTTTSEEEEECCCBSHHHHHHHHHHHHHH--TTSSE
T ss_pred EEEEEEECCC-CceEEEEEEEcc-cccchhhhhhhhhcceeEEEecCCCEEEEEECccCchHHHHHHHHHHHh--CCCCE
Confidence 9999999987 356778887532 111111110 001123578999999999998899999999764 68999
Q ss_pred EEEEccCCCCCcHHHHHHHHhccccCCcEEEEEeccCcccceeeecCCCCCCCCcEEEEEcCCCcccccceec
Q 016195 320 FILDLRDNLGGLVQAGIEIAKLFLNEGETITYTVGRDPQYQKTIVADNSPLVTAPVIVCAPAFKMRQQLFFYI 392 (393)
Q Consensus 320 lIlDLR~N~GG~l~~a~~ia~lfl~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~PlvVLVN~~TaSaAE~fa~ 392 (393)
||||||+|+||.+..++ +++| .++ +++++.+|.+... .+.. ..+++||+||||+.|+||||+|+.
T Consensus 882 liiDlR~N~GG~~~~~~--~~~~-~~~-~~~~~~~~~~~~~-~~~~---~~~~~~~~vL~~~~taSa~e~~~~ 946 (1045)
T 1k32_A 882 LIVDVRFNGGGFVSQLI--IEKL-MNK-RIGYDNPRRGTLS-PYPT---NSVRGKIIAITNEYAGSDGDIFSF 946 (1045)
T ss_dssp EEEECTTCCCBSCHHHH--HHHH-TCB-CCEEEEESSSCCE-EEST---TCBCSEEEEEECTTCCTHHHHHHH
T ss_pred EEEEcCcCCCCCHHHHH--Hhhc-cCC-cEEEEecCCCcee-eccc---cCCCCCEEEEECCCCccHHHHHHH
Confidence 99999999999999875 6665 444 5678888887643 3322 347899999999999999999973
No 3
>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}
Probab=100.00 E-value=1.3e-34 Score=291.77 Aligned_cols=262 Identities=20% Similarity=0.286 Sum_probs=184.0
Q ss_pred HHHHHHHHHhcCCCCCCC-CChhhHHHHHHHHhhhcccChHHHHHHHHHHHHhcCCC-ceeecCHHHHhhhccCceeeeE
Q 016195 106 EEAWQIVNDSFLDTGRHR-WTPQNWQRKREDILSSSIQTRSKAHGIIKRMLASLGDP-YTRFLSPAEFSKMARYDMSGIG 183 (393)
Q Consensus 106 ~~~W~~v~~~y~d~~~~~-~~~~dW~~v~~~y~~~~i~t~~~~~~~i~~ml~~L~D~-ht~~~~~~e~~~~~~~~~~glG 183 (393)
+.+|+.++++|+-.++.. -.+.+| ..+ ....++.++... |+ ++++.+..+ .. ....|+|
T Consensus 17 ~~i~~~m~~~Ylw~~~ip~~~~~~~-----------~~~---p~~~f~~l~~~~-D~~fS~i~~~~~-~~---~~~~G~~ 77 (403)
T 3k50_A 17 IWIDSVMRQEYLWYRDMPSPAAPDY-----------FQK---PEAFLKKAVASM-DNGFSKIDSLLD-EP---IPSYGFD 77 (403)
T ss_dssp CHHHHHHHHHCTTGGGSCCCCCCCS-----------SSC---HHHHHHHHSCTT-CSSCSEEEECCS-SC---CCBCSEE
T ss_pred HHHHHHHHHhccchhhccCccCccc-----------cCC---HHHHHHHhCccc-CCCceeEccccc-cC---ccccceE
Confidence 468899999998433210 001111 112 223344555554 99 555554444 22 2367888
Q ss_pred EEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCCCCc----
Q 016195 184 INLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNCGP---- 259 (393)
Q Consensus 184 i~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~~~~---- 259 (393)
+.+....+.+....++|..|.++|||++|||++||+|++|||+++..+. +..++++ +|++|+|++.|++..+
T Consensus 78 ~~l~~~~~~~~~~~~~V~~V~~gsPA~~AGL~~GD~I~~InG~~v~~~~---~~~~l~~-~g~~v~l~v~R~g~~~~~~~ 153 (403)
T 3k50_A 78 YTLYKVLDNDTAYNALISYVVPGSPAEEAGLQRGHWIMMMNGDYITKKV---ESELLQG-STRQLQIGVYKEVVGEDGEV 153 (403)
T ss_dssp EEEEECTTCSSCEEEEEEEECTTSHHHHTTCCTTCEEEEETTBCBCTTT---GGGGTSC-SCEEEEEEEEEEEC-----C
T ss_pred EEEEEcCCCCcceeEEEEEeCCCChHHHcCCCCCCEEEEECCEEccchh---HHHHhhC-CCCEEEEEEEeCCccccccc
Confidence 8877643222223478999999999999999999999999999999874 5677888 9999999999987542
Q ss_pred ------eEEEEEE-eeccccCcee-eeeeeecCCCceEEEEEeCccch-------hHHHHHHHHHHHHHHCCCCeEEEEc
Q 016195 260 ------IESIQVQ-RQLVARTPVF-YRLEHLDNGTTSVGYMRLKEFNA-------LARKDLVTAMKRLQDMGASYFILDL 324 (393)
Q Consensus 260 ------~~~v~l~-r~~~~~~~v~-~~~~~l~~~~~~igYI~i~~F~~-------~~~~~l~~al~~l~~~g~~~lIlDL 324 (393)
..+++++ ++.+...++. +++ ++..+++||||++++|.. .+.++|+++|.+|+++|+++|||||
T Consensus 154 ~~~~i~~~~~~l~~~r~~~~~pv~~~~v--~~~~~~~iGYI~i~~F~~~t~~~~~~~~~~l~~al~~l~~~~~~~lIlDL 231 (403)
T 3k50_A 154 TGGVVPIGETTMPASRSLVDKPVHRFEI--IPWNGKKVGYLMYNEFKAGPTTDSQAYNDDLRRAFRDFQTGGVNEFVLDL 231 (403)
T ss_dssp EEEEEEEEEEEECCCBCCCCCSEEEEEE--EEETTEEEEEEEECCBCCCSSTTCCHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred ccccccccceEEEeeeeeeeccceeeee--eeeCCCcEEEEEEccccCcccccchhhHHHHHHHHHHHHHCCCcEEEEEc
Confidence 1133443 2223334443 333 333468999999999987 4568999999999999999999999
Q ss_pred cCCCCCcHHHHHHHHhccccCCc---EEEEEe--ccCcccceeeecCC------CCCCCCcEEEEEcCCCcccccceec
Q 016195 325 RDNLGGLVQAGIEIAKLFLNEGE---TITYTV--GRDPQYQKTIVADN------SPLVTAPVIVCAPAFKMRQQLFFYI 392 (393)
Q Consensus 325 R~N~GG~l~~a~~ia~lfl~~g~---~v~~~~--~r~~~~~~~~~~~~------~~~~~~PlvVLVN~~TaSaAE~fa~ 392 (393)
|+||||.+..|+.+|++|+++|. ++++++ +|.+.....+..+. ...+.+|++||||+.|+||||+|+.
T Consensus 232 R~N~GG~l~~a~~la~~f~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vL~~~~taSa~E~~~~ 310 (403)
T 3k50_A 232 RYNTGGSLDCAQLLCTMLAPADKMNQLLALLRYSDKRVEANQDLTFNPELIQSGANLNLSTVYVLTTNATRGAAEMVIN 310 (403)
T ss_dssp TTCCCBCHHHHHHHHHHHSCGGGTTSEEEEEECCTTCGGGCEEEECCGGGTTTSCCCCCSEEEEEECTTCCTHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhcCCCccceeEEEEEEcCCCCcceeEEeccccccccccccCCCCEEEEECCCCccHHHHHHH
Confidence 99999999999999999999875 366766 45544333333322 2344689999999999999999974
No 4
>3dor_A Protein CT_858, CPAF; mature CPAF, dimer, transferase; 2.20A {Chlamydia trachomatis} PDB: 3dpm_A* 3dpn_A 3dja_A
Probab=99.70 E-value=3e-15 Score=154.59 Aligned_cols=225 Identities=15% Similarity=0.257 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCh--hhH------HHHHHHHhhhcccChHHHHHHHHHHHHhcCCCceeecCHHHHhh
Q 016195 102 EGIVEEAWQIVNDSFLDTGRHRWTP--QNW------QRKREDILSSSIQTRSKAHGIIKRMLASLGDPYTRFLSPAEFSK 173 (393)
Q Consensus 102 ~~~f~~~W~~v~~~y~d~~~~~~~~--~dW------~~v~~~y~~~~i~t~~~~~~~i~~ml~~L~D~ht~~~~~~e~~~ 173 (393)
.+-|+-+-.+++.+|.-. .|.. -.| ++++++...+...+..+|+..+..+++.++|.|+.+..+..
T Consensus 8 ~~d~~~l~~l~~~kYap~---~wK~~~~g~Dl~~~l~~ir~kl~~e~~~Te~dFq~~L~~~fasl~DGHt~l~~~s~--- 81 (583)
T 3dor_A 8 LQDLSFLEHLLQVKYAPK---TWKEQYLGWDLVQSSVSAQQKLRTQENPSTSFCQQVLADFIGGLNDFHAGVTFFAI--- 81 (583)
T ss_dssp HHHHHHHHHHHHHHCTTH---HHHHHHSCCCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCCSSCEEEESCC---
T ss_pred HHHHHHHHHHHhcccCCc---hhhhccCCcCchhHHHHHHHHHHccCCCCHHHHHHHHHHHHhhcCCCceeEeeccc---
Confidence 345777777777777532 1221 122 11222222223468899999999999999999999865411
Q ss_pred hccCceeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCC--------------HHHHHHH
Q 016195 174 MARYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKS--------------AFEVSSL 239 (393)
Q Consensus 174 ~~~~~~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~--------------~~~v~~~ 239 (393)
.+..+|+.+.... +| +++|.++.... ++++.||+|++|||+++..+- ...+.+.
T Consensus 82 ----~~a~~Pf~vki~i--DG--~i~V~dv~~~~----s~I~vGdEIlsING~pv~e~Lek~~~~~Gsn~~a~~~~Al~~ 149 (583)
T 3dor_A 82 ----ESAYLPYTVQKSS--DG--RFYFVDIMTFS----SEIRVGDELLEVDGAPVQDVLATLYGSNHKGTAAEESAALRT 149 (583)
T ss_dssp ----CEEECSEEEEECT--TS--CEEEEEECSSC----CSSCTTCEEEEETTEEHHHHHHTTSCTTCCCCHHHHHHHHHH
T ss_pred ----ccccCCeEEEEEE--CC--cEEEEeccccc----cCCCCCCEEEEECCccHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 2334566555122 34 46676653222 279999999999999985431 0011111
Q ss_pred hc------CC--CCCeEEEEEEeCCCCceEEEEEE----eecccc------------------------------Cc---
Q 016195 240 LQ------GP--SETFVTIEVKHGNCGPIESIQVQ----RQLVAR------------------------------TP--- 274 (393)
Q Consensus 240 L~------g~--~G~~V~Ltv~r~~~~~~~~v~l~----r~~~~~------------------------------~~--- 274 (393)
|. +. +...++|++++++ |..+++++. ++.+.. ++
T Consensus 150 Lt~R~~~l~~~~p~~~~tlk~~~~~-G~~~~v~~pW~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (583)
T 3dor_A 150 LFSRMASLGHKVPSGRTTLKIRRPF-GTTREVRVKWRYVPEGVGDLATIAPSIRAPQLQKSMRSFFPKKDDAFHRSSSLF 228 (583)
T ss_dssp HTEEEGGGTCCCCCSEEEEEEECTT-SCEEEEEEECEEECCCSCCHHHHGGGCCCCCC----------------------
T ss_pred HhhhHHhhccCCCCCceEEEEECCC-CcEEEEEeeeEEcccccccccccCcchhhccccccchhhccccccccccCcccc
Confidence 11 11 3347888886655 566666652 111000 00
Q ss_pred ----ee---------e--e--------------------------------e-eeecCCCc--eEEEEEeCccchhH---
Q 016195 275 ----VF---------Y--R--------------------------------L-EHLDNGTT--SVGYMRLKEFNALA--- 301 (393)
Q Consensus 275 ----v~---------~--~--------------------------------~-~~l~~~~~--~igYI~i~~F~~~~--- 301 (393)
|. + + + ..-+..+. +||||||++|....
T Consensus 229 ~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~f~~~~g~~~w~~~~~~~a~i~~~~~~~~~~~~ig~~ri~~~~~~~~~~ 308 (583)
T 3dor_A 229 YSPMVPHFWAELRNHYATSGLKSGYNIGSTDGFLPVIGPVIWESEGLFRAYISSVTDGDGKSHKVGFLRIPTYSWQDMED 308 (583)
T ss_dssp -----------------------CCSTTCSSCSCCCSSCCSEECCSSSEEEEEEEECSSSCEEEEEEEECCCBCGGGSTT
T ss_pred ccccChHHHHHHHhhhhccccccccCccccccccCCCCCcccccCCceeeEEEeccccCCCcceeeEEEccccCCccccc
Confidence 00 0 0 0 00112334 89999999997643
Q ss_pred --------HHHHHHHHHHHHHCCCCeEEEEccCCCCCcHHHHHHHHhccccCC
Q 016195 302 --------RKDLVTAMKRLQDMGASYFILDLRDNLGGLVQAGIEIAKLFLNEG 346 (393)
Q Consensus 302 --------~~~l~~al~~l~~~g~~~lIlDLR~N~GG~l~~a~~ia~lfl~~g 346 (393)
-.+|.+.+.-+ +.+.++||||+|+||||++.-.-.+++++.++.
T Consensus 309 ~~~~~~~~~~~f~~~~~~~-~~~~~~liid~~~n~gg~~~~~~~~~~~l~~~p 360 (583)
T 3dor_A 309 FDPSGPPPWEEFAKIIQVF-SSNTEALIIDQTNNPGGSVLYLYALLSMLTDRP 360 (583)
T ss_dssp CCTTSCCHHHHHHHHHHHH-HHHCSEEEEECCSBCCBCHHHHHHHHHTTCSSC
T ss_pred ccccCCcHHHHHHHHHHHh-hcCCCeEEEEecCCCCccHHHHHHHHHHHhcCC
Confidence 24565555544 357999999999999999998888999998864
No 5
>1j7x_A IRBP, interphotoreceptor retinoid-binding protein; beta BETA alpha spiral, transport protein; 1.80A {Xenopus laevis} SCOP: c.14.1.2
Probab=99.70 E-value=3.3e-17 Score=159.08 Aligned_cols=106 Identities=19% Similarity=0.220 Sum_probs=83.2
Q ss_pred ceEEEEEeCccchh-HHHHHHHHHHHHH---HCCCCeEEEEccCCCCCcHHHHHHHHhccccCCc--EEEEEeccCcccc
Q 016195 287 TSVGYMRLKEFNAL-ARKDLVTAMKRLQ---DMGASYFILDLRDNLGGLVQAGIEIAKLFLNEGE--TITYTVGRDPQYQ 360 (393)
Q Consensus 287 ~~igYI~i~~F~~~-~~~~l~~al~~l~---~~g~~~lIlDLR~N~GG~l~~a~~ia~lfl~~g~--~v~~~~~r~~~~~ 360 (393)
++||||+|++|... ..+++.+++.++. .+++++||||||+|+||.+..+..++++|++++. .++++.+|.+...
T Consensus 106 ~~igYi~i~~F~~~~~~~~~~~~l~~~~~~~~~~~~~LIiDLR~N~GG~~~~~~~l~~~f~~~~~~~~i~~~~~r~~~~~ 185 (302)
T 1j7x_A 106 GNIGYLRFDQFADVSVIAKLAPFIVNTVWEPITITENLIIDLRYNVGGSSTAVPLLLSYFLDPETKIHLFTLHNRQQNST 185 (302)
T ss_dssp TTEEEEECCCBCCHHHHHHHHHHHHHHTHHHHTTCSEEEEECTTCCCBCSTTHHHHHHTTSCSSCCCEEEEEEETTTTCC
T ss_pred CCEEEEEEcccCChhhHHHHHHHHHHHHHHhcCCCCeEEEEeCCCCCCChhHHHHHHHHhcCCCcceeeEEEEccCCCCc
Confidence 67999999999876 4677887774431 2689999999999999999999999999999874 3567778876643
Q ss_pred eeeecCCC----C-CCCCcEEEEEcCCCcccccceec
Q 016195 361 KTIVADNS----P-LVTAPVIVCAPAFKMRQQLFFYI 392 (393)
Q Consensus 361 ~~~~~~~~----~-~~~~PlvVLVN~~TaSaAE~fa~ 392 (393)
..+...+. . .+++|++||||+.|+||||+|+.
T Consensus 186 ~~~~~~~~~~~~~~~~~~pvvVLvn~~TaSAsE~~a~ 222 (302)
T 1j7x_A 186 DEVYSHPKVLGKPYGSKKGVYVLTSHQTATAAEEFAY 222 (302)
T ss_dssp EEEECCSCCSSCCCCSSSEEEEEECTTCCTHHHHHHH
T ss_pred eeecccccccCCccCCCCCEEEEeCCCcCcHHHHHHH
Confidence 33333221 1 26899999999999999999873
No 6
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}
Probab=99.43 E-value=2.4e-13 Score=114.28 Aligned_cols=101 Identities=25% Similarity=0.326 Sum_probs=76.4
Q ss_pred HhcCCCceeecCHHHHhhhc---cCceeeeEEEEEEeeCC-CCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCC
Q 016195 156 ASLGDPYTRFLSPAEFSKMA---RYDMSGIGINLREVPDA-NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRG 230 (393)
Q Consensus 156 ~~L~D~ht~~~~~~e~~~~~---~~~~~glGi~~~~~~~~-~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~ 230 (393)
..+.|+|+.|+++++++.+. .+.+.++|+.+....+. .|...++|..|.++|||+++| |++||+|++|||+++..
T Consensus 14 ~~~~D~~~~y~~~~~~~~~~v~l~~~~~~lG~~l~~~~~~~~g~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~ 93 (121)
T 2kom_A 14 SENLYFQGSYNTKKIGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVG 93 (121)
T ss_dssp -------CCCCCCCSCEEEEEEEECCTTCCCEEEECCCCSSSSSCCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTT
T ss_pred ccccCccccccCccCCeEEEEEEEcCCCcEeEEEEeccCCcCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCC
Confidence 45679999999998876542 45667899998753211 011148999999999999999 99999999999999999
Q ss_pred CCHHHHHHHhcCC-CCCeEEEEEEeCC
Q 016195 231 KSAFEVSSLLQGP-SETFVTIEVKHGN 256 (393)
Q Consensus 231 ~~~~~v~~~L~g~-~G~~V~Ltv~r~~ 256 (393)
++.+++..++++. .|+.|.|+|.|++
T Consensus 94 ~~~~~~~~~l~~~~~g~~v~l~v~R~g 120 (121)
T 2kom_A 94 KSQEEVVSLLRSTKMEGTVSLLVFRQE 120 (121)
T ss_dssp SCHHHHHHHHHHCCSSCEEEEEEEECC
T ss_pred CCHHHHHHHHhcCCCCCEEEEEEEeCC
Confidence 8888998888764 5899999999875
No 7
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Probab=99.37 E-value=9.7e-13 Score=108.38 Aligned_cols=96 Identities=26% Similarity=0.379 Sum_probs=77.8
Q ss_pred ceeecCHHHHhhhc---cCceeeeEEEEEEeeCC-CCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHH
Q 016195 162 YTRFLSPAEFSKMA---RYDMSGIGINLREVPDA-NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEV 236 (393)
Q Consensus 162 ht~~~~~~e~~~~~---~~~~~glGi~~~~~~~~-~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v 236 (393)
||+|+++++++.+. .+.+.|+|+.+....+. .+...++|..|.++|||+++| |++||+|++|||+++.+++..++
T Consensus 1 ~s~y~~~~~~~~~~~~l~~~~~glG~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~ 80 (111)
T 2koj_A 1 GSVYNTKKVGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEV 80 (111)
T ss_dssp CCCCCCSSSCEEEEEEEECBTTBTCEEEEECSCSSSSSSCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTSCHHHH
T ss_pred CCcccCcccCcEEEEEEEECCCccCEEEEeccCCCCCCcCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHH
Confidence 89999998876542 45567899998754211 000148999999999999999 99999999999999999888899
Q ss_pred HHHhcCC-CCCeEEEEEEeCCC
Q 016195 237 SSLLQGP-SETFVTIEVKHGNC 257 (393)
Q Consensus 237 ~~~L~g~-~G~~V~Ltv~r~~~ 257 (393)
..++++. .|+.+.|+|.|++.
T Consensus 81 ~~~l~~~~~g~~v~l~v~R~~~ 102 (111)
T 2koj_A 81 VSLLRSTKMEGTVSLLVFRQEE 102 (111)
T ss_dssp HHHHHHCCCSSEEEEEEEECCC
T ss_pred HHHHHhCCCCCeEEEEEEeCCC
Confidence 9888864 58999999999773
No 8
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=99.36 E-value=7.4e-13 Score=110.68 Aligned_cols=98 Identities=17% Similarity=0.257 Sum_probs=71.0
Q ss_pred hcCCCceeecCHHHHhhhc--cCceeeeEEEEEEeeCC---CCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCC
Q 016195 157 SLGDPYTRFLSPAEFSKMA--RYDMSGIGINLREVPDA---NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRG 230 (393)
Q Consensus 157 ~L~D~ht~~~~~~e~~~~~--~~~~~glGi~~~~~~~~---~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~ 230 (393)
.+.|||+.|++++++..+. ++. .|+||.+....+. .+...++|..|.++|||+++| |++||+|++|||+++.+
T Consensus 11 ~~~dp~s~y~~~~~~~~v~l~k~~-~glG~~i~gg~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~ 89 (117)
T 2byg_A 11 VDLGTENLYFQSMTVVEIKLFKGP-KGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEE 89 (117)
T ss_dssp ---------CEEEEEEEEEEECBT-TBSSEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTT
T ss_pred cCCCCcccccCCCceEEEEEEeCC-CCcCEEEEcccCCCCccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCC
Confidence 3459999999998876532 333 7899998742110 011148999999999999999 99999999999999999
Q ss_pred CCHHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 231 KSAFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 231 ~~~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
++..++..+++. .|+.|+|+|.|++
T Consensus 90 ~~~~~~~~~l~~-~g~~v~l~v~R~~ 114 (117)
T 2byg_A 90 VTHEEAVAILKN-TSEVVYLKVGKPT 114 (117)
T ss_dssp CCHHHHHHHHHT-CCSEEEEEEEEEE
T ss_pred CCHHHHHHHHHc-CCCeEEEEEEeCC
Confidence 889999999985 4889999999865
No 9
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}
Probab=99.35 E-value=1e-12 Score=108.80 Aligned_cols=98 Identities=27% Similarity=0.393 Sum_probs=67.3
Q ss_pred HhcCCCceeecCHHHHhhhc-cCceeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCH
Q 016195 156 ASLGDPYTRFLSPAEFSKMA-RYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSA 233 (393)
Q Consensus 156 ~~L~D~ht~~~~~~e~~~~~-~~~~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~ 233 (393)
..++|||+.|+++.+..... .....|+||.+....+... .++|..|.++|||+++| |++||+|++|||+++.+++.
T Consensus 10 ~~~~d~~t~~~~~~~~~~v~l~~~~~glG~~l~~~~~~~~--gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~ 87 (112)
T 2r4h_A 10 GVDLGTENLYFQSMDFYTVELERGAKGFGFSLRGGREYNM--DLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKH 87 (112)
T ss_dssp -------------CCEEEEEEECBTTBTSEEEEECGGGTC--CEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCH
T ss_pred cCCCCCcccccCCCceEEEEEEcCCCccCEEEeccccCCC--CEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCH
Confidence 45679999999998866432 2233679998864321111 38899999999999999 99999999999999999888
Q ss_pred HHHHHHhcCCCCCeEEEEEEeCC
Q 016195 234 FEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 234 ~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
.++...++. .|..+.|+|.|++
T Consensus 88 ~~~~~~l~~-~g~~v~l~v~R~~ 109 (112)
T 2r4h_A 88 SRAIELIKN-GGRRVRLFLKRGE 109 (112)
T ss_dssp HHHHHHHHT-TTTEEEEEEECCE
T ss_pred HHHHHHHHc-CCCeEEEEEEeCC
Confidence 888888875 6889999999865
No 10
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}
Probab=99.30 E-value=2.4e-13 Score=112.81 Aligned_cols=93 Identities=31% Similarity=0.366 Sum_probs=74.7
Q ss_pred HHHHHHhcCCCceeecCHHHHhhhccCceeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCC
Q 016195 151 IKRMLASLGDPYTRFLSPAEFSKMARYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRG 230 (393)
Q Consensus 151 i~~ml~~L~D~ht~~~~~~e~~~~~~~~~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~ 230 (393)
+++|+..| |||+.++++++.+ ++|+.+....+..| ++|..|.++|||+++||++||+|++|||+++..
T Consensus 5 ~~~~~~~l-dp~~~~l~~~~~~--------~~G~~l~~~~~~~g---~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~ 72 (114)
T 2edz_A 5 SSGMASTF-NPRECKLSKQEGQ--------NYGFFLRIEKDTDG---HLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDK 72 (114)
T ss_dssp CCCCCCCC-CCEEEEEECCTTC--------CCSCEEECCTTCCS---CEEECCCTTCTTGGGTCCTTCEEEEESSSBCSS
T ss_pred hhhHhhcC-CCEEEEEeCCCCC--------cccEEEEEecCCCC---eEEEEeCCCChHHHcCCCCCCEEEEECCEECCC
Confidence 45788889 9999999876543 23444432222233 789999999999999999999999999999999
Q ss_pred CCHHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 231 KSAFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 231 ~~~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
+...++...++. .|+.+.|+|.|++
T Consensus 73 ~~~~~~~~~l~~-~g~~v~l~v~R~~ 97 (114)
T 2edz_A 73 EEHAQVVELVRK-SGNSVTLLVLDGD 97 (114)
T ss_dssp SCHHHHHHHHHH-TCSEEEEEEECHH
T ss_pred CCHHHHHHHHHc-CCCEEEEEEEECC
Confidence 888888888875 4899999999976
No 11
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.24 E-value=3.5e-12 Score=105.85 Aligned_cols=95 Identities=25% Similarity=0.358 Sum_probs=76.4
Q ss_pred CCceeecCHHHHhhh-ccCceeeeEEEEEEeeCCC-CeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHH
Q 016195 160 DPYTRFLSPAEFSKM-ARYDMSGIGINLREVPDAN-GVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEV 236 (393)
Q Consensus 160 D~ht~~~~~~e~~~~-~~~~~~glGi~~~~~~~~~-G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v 236 (393)
|||+.|+.+.+.... ......|+|+.+....+.. + .++|..|.++|||+++| |++||+|++|||+++..+...++
T Consensus 7 Dp~s~~~~~~~~~~v~l~~~~~glG~~l~~~~~~~~~--gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~ 84 (116)
T 2dm8_A 7 GPATCPIVPGQEMIIEISKGRSGLGLSIVGGKDTPLN--AIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEA 84 (116)
T ss_dssp CSSSCCCCTTSCEEEEEECCSSCCCCCCBCCTTSSCS--SEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCHHHH
T ss_pred CcccCccCCCCEEEEEEEECCCcccEEEeCCCCCCcC--CEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHH
Confidence 999999999875432 2345678999886432211 2 38899999999999999 99999999999999999888888
Q ss_pred HHHhcCCCCCeEEEEEEeCCC
Q 016195 237 SSLLQGPSETFVTIEVKHGNC 257 (393)
Q Consensus 237 ~~~L~g~~G~~V~Ltv~r~~~ 257 (393)
..+++.. ++.+.|+|.|++.
T Consensus 85 ~~~l~~~-~~~v~l~v~R~~~ 104 (116)
T 2dm8_A 85 ITALRQT-PQKVRLVVYRDEA 104 (116)
T ss_dssp HHHHHTC-CSEEEEEEECCSS
T ss_pred HHHHHhC-CCeEEEEEEeCCc
Confidence 8888754 4899999999763
No 12
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=99.23 E-value=1.6e-11 Score=104.70 Aligned_cols=104 Identities=18% Similarity=0.206 Sum_probs=77.2
Q ss_pred HHHHHHhcCCCceeecCHHHHhhhccCceeeeEEEEEEeeCCCC----------eeEEEEEEEcCCChhhhcCCCCCCEE
Q 016195 151 IKRMLASLGDPYTRFLSPAEFSKMARYDMSGIGINLREVPDANG----------VVTLKVLGLILDGPAHSAGVRQGDEV 220 (393)
Q Consensus 151 i~~ml~~L~D~ht~~~~~~e~~~~~~~~~~glGi~~~~~~~~~G----------~~~l~V~~V~~gsPA~~AGL~~GD~I 220 (393)
.++++ .+.|+|+.|.++...-.+.+....|+||.+....+..+ ...++|..|.++|||+++||++||+|
T Consensus 11 ~~~~~-~~~~~~s~~~~~~r~v~l~r~~~~g~Gf~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~gspA~~aGL~~GD~I 89 (132)
T 3l4f_D 11 SQDPL-VPRGSGSDYIIKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFL 89 (132)
T ss_dssp ---------CCSCCCCCCCCEEEEECCTTSCCCEEEEEECCSSCCSCCCCCTTSCCSEEEEEECTTSGGGGGTCCTTCEE
T ss_pred hcCCC-ccCCCCCCcCCCCEEEEEEECCCCcEeEEEeccCCCCccccccccccCCCCEEEEEECCCCHHHHcCCCCCCEE
Confidence 33443 34599999998766544444455789999876532110 00278999999999999999999999
Q ss_pred EEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 221 LAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 221 lsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
++|||+++.+++..++..++++ .|..+.|+|.+..
T Consensus 90 l~Vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~~~~ 124 (132)
T 3l4f_D 90 IEVNGQNVVKVGHRQVVNMIRQ-GGNTLMVKVVMVT 124 (132)
T ss_dssp EEESSSBCTTSCHHHHHHHHHH-TTTEEEEEEECCC
T ss_pred EEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEECC
Confidence 9999999999988999998886 7789999998865
No 13
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=99.22 E-value=9.9e-12 Score=99.99 Aligned_cols=91 Identities=26% Similarity=0.363 Sum_probs=72.2
Q ss_pred CCceeecCHHHHhhhccCceeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHH
Q 016195 160 DPYTRFLSPAEFSKMARYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSL 239 (393)
Q Consensus 160 D~ht~~~~~~e~~~~~~~~~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~ 239 (393)
|||+.|.+... .+ .....|+|+.+....+.. .++|..|.++|||+++||++||+|++|||+++..++..++..+
T Consensus 3 Dp~~~~~~~~~--~l-~~~~~g~G~~~~~~~~~~---g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~ 76 (98)
T 2jxo_A 3 DPFTMLRPRLC--TM-KKGPSGYGFNLHSDKSKP---GQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSA 76 (98)
T ss_dssp CSSCSSCCEEE--EE-ECTTTCCCEEEECCCSSS---CEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred CCCccCCcEEE--EE-EeCCCcccEEEEecCCCC---CEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 88888875321 11 233468999986543222 3889999999999999999999999999999999888999999
Q ss_pred hcCCCCCeEEEEEEeCC
Q 016195 240 LQGPSETFVTIEVKHGN 256 (393)
Q Consensus 240 L~g~~G~~V~Ltv~r~~ 256 (393)
++...++.+.|++.|++
T Consensus 77 l~~~~~~~~~l~v~R~g 93 (98)
T 2jxo_A 77 IRAGGDETKLLVVDRET 93 (98)
T ss_dssp HHTTTTEEEEEECCHHH
T ss_pred HHhCCCcEEEEEEECCc
Confidence 98777778888888765
No 14
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=99.21 E-value=5.4e-11 Score=95.25 Aligned_cols=78 Identities=29% Similarity=0.379 Sum_probs=65.4
Q ss_pred eeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCCCC
Q 016195 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNCG 258 (393)
Q Consensus 180 ~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~~~ 258 (393)
.|+|+.+....+.++...++|..|.++|||++|||++||+|++|||+++..++..++..+++.. |+.+.|++.|++..
T Consensus 14 ~~~G~~l~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~r~~~~ 91 (96)
T 2v90_A 14 QGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQGQ-GSCVSLTVVDPEAD 91 (96)
T ss_dssp TBSCEEEEEEECTTSCEEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHTT-TTEEEEEEECCCTT
T ss_pred CcccEEEEeccCCCCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEECCCCc
Confidence 5789988764322222358999999999999999999999999999999998888999999875 89999999998743
No 15
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B
Probab=99.20 E-value=1e-10 Score=96.37 Aligned_cols=86 Identities=22% Similarity=0.327 Sum_probs=70.7
Q ss_pred cCceeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCC-CCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEe
Q 016195 176 RYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGV-RQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH 254 (393)
Q Consensus 176 ~~~~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL-~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r 254 (393)
++.+.|+|+.+....+.. .++|..|.++|||+++|| ++||+|++|||+++..++.+++..+++...|+.+.|++.|
T Consensus 9 ~~~~~glG~~~~~~~~~~---~~~V~~v~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R 85 (112)
T 1qau_A 9 KRKVGGLGFLVKERVSKP---PVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILR 85 (112)
T ss_dssp CBTTTBTSEEEEECSSSS---CEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSEEEEEEE
T ss_pred cCCCCceeEEEEecCCCC---CEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCcEEEEEEe
Confidence 455678999987643222 488999999999999997 9999999999999999888899999987788999999999
Q ss_pred CCCCceEEEEEE
Q 016195 255 GNCGPIESIQVQ 266 (393)
Q Consensus 255 ~~~~~~~~v~l~ 266 (393)
++... +++++
T Consensus 86 ~g~~~--~~~~~ 95 (112)
T 1qau_A 86 GPEGF--TTHLE 95 (112)
T ss_dssp CCTTS--EEEEE
T ss_pred CCccc--ceEee
Confidence 87543 44444
No 16
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}
Probab=99.19 E-value=3.2e-11 Score=101.59 Aligned_cols=98 Identities=18% Similarity=0.271 Sum_probs=67.1
Q ss_pred hcCCCceeecCHHHHhhhccCceeeeEEEEEEeeCC-------CCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEc
Q 016195 157 SLGDPYTRFLSPAEFSKMARYDMSGIGINLREVPDA-------NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDV 228 (393)
Q Consensus 157 ~L~D~ht~~~~~~e~~~~~~~~~~glGi~~~~~~~~-------~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v 228 (393)
.+.|+|+.|++|.++... +....++|+.+....+. +....++|..|.++|||++|| |++||+|++|||+++
T Consensus 14 ~~~d~~s~~~~p~~v~l~-k~~~~~lGi~v~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v 92 (123)
T 2iwq_A 14 GTENLYFQSMQPRRVELW-REPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDL 92 (123)
T ss_dssp ---------CCCEEEEEC-CCTTSCCSEEEEECC---------CCCCSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC
T ss_pred ccccCCcccCCCEEEEEE-ecCCCCccEEEEeccCccccccccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEEC
Confidence 445899999998765533 23335677776532110 000138999999999999999 999999999999999
Q ss_pred CCCCHHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 229 RGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 229 ~~~~~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
.+++.+++..++++. +..+.|+|.|..
T Consensus 93 ~~~~~~~~~~~l~~~-~~~v~l~v~r~~ 119 (123)
T 2iwq_A 93 RDASHEQAVEAIRKA-GNPVVFMVQSII 119 (123)
T ss_dssp TTCCHHHHHHHHHHC-CSSEEEEEECCC
T ss_pred CCCCHHHHHHHHHcC-CCeEEEEEEECC
Confidence 998889999999765 458999998865
No 17
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Probab=99.19 E-value=6.3e-12 Score=106.50 Aligned_cols=98 Identities=22% Similarity=0.359 Sum_probs=78.7
Q ss_pred CCCceeecCHHHHhhh-----c-cCceeeeEEEEEEeeCC--CCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcC
Q 016195 159 GDPYTRFLSPAEFSKM-----A-RYDMSGIGINLREVPDA--NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVR 229 (393)
Q Consensus 159 ~D~ht~~~~~~e~~~~-----~-~~~~~glGi~~~~~~~~--~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~ 229 (393)
.|+|+.|+++++.+.. . +....|+||.+....+. .+...++|..|.++|||+++| |++||+|++|||+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~ 89 (127)
T 1wg6_A 10 GEPDCYALSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLL 89 (127)
T ss_dssp SCSSSCCSSCCCCEEEEEEEECSSSTTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEEST
T ss_pred CCCcccccCCCCCCceEEEEEEeeCCCCccCeEEecccCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECC
Confidence 3899999999875532 1 25678899998753211 011258999999999999999 9999999999999999
Q ss_pred CCCHHHHHHHhcC------CCCCeEEEEEEeCC
Q 016195 230 GKSAFEVSSLLQG------PSETFVTIEVKHGN 256 (393)
Q Consensus 230 ~~~~~~v~~~L~g------~~G~~V~Ltv~r~~ 256 (393)
++++.++..+|+. +.++.|+|+|.|.+
T Consensus 90 ~~~~~~~~~~l~~~~~~~g~~~~~v~l~v~R~~ 122 (127)
T 1wg6_A 90 GKSNHEAMETLRRSMSMEGNIRGMIQLVILRRS 122 (127)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTCEEEEEEEECS
T ss_pred CCCHHHHHHHHHHhhccccCCCCEEEEEEEeCC
Confidence 9988899999874 35889999999976
No 18
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=99.19 E-value=1.2e-10 Score=92.09 Aligned_cols=73 Identities=26% Similarity=0.355 Sum_probs=63.5
Q ss_pred eeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 180 ~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
.|+|+.+....+..| ++|..|.++|||+++||++||+|++|||+++..++..++..+++.. |..+.|++.|++
T Consensus 15 ~g~G~~~~~~~~~~g---v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~~ 87 (90)
T 2he4_A 15 QGYGFNLHSDKSRPG---QYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR-EDEARLLVVGPS 87 (90)
T ss_dssp TBCCEEEEECSSSSS---EEEEEECTTSHHHHHTCCTTCEEEEETTEECTTSCHHHHHHHHTTS-SSEEEEEEECCC
T ss_pred CCccEEEEccCCCCC---EEEEEECCCChHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCcEEEEEEccC
Confidence 578998875432223 8999999999999999999999999999999998888999999865 899999999976
No 19
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.19 E-value=1.4e-11 Score=102.95 Aligned_cols=95 Identities=24% Similarity=0.324 Sum_probs=71.5
Q ss_pred CCCceeecCHHHHhh-----hccCceeeeEEEEEEeeC-CCCeeEEEEEEEcCCChhhhc-CCCCCCEEEEECCEEcCCC
Q 016195 159 GDPYTRFLSPAEFSK-----MARYDMSGIGINLREVPD-ANGVVTLKVLGLILDGPAHSA-GVRQGDEVLAVNGVDVRGK 231 (393)
Q Consensus 159 ~D~ht~~~~~~e~~~-----~~~~~~~glGi~~~~~~~-~~G~~~l~V~~V~~gsPA~~A-GL~~GD~IlsVnG~~v~~~ 231 (393)
.||||.| .++++.. .......|+|+.+....+ ..+ .++|..|.++|||+++ ||++||+|++|||+++.++
T Consensus 3 ~dP~s~~-~~~~~~~~~~~~~~~~~~~glG~~i~gg~~~~~~--~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~ 79 (118)
T 1v6b_A 3 EGAATMF-SPEQIAGKDVRLLRIKKEGSLDLALEGGVDSPVG--KVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDY 79 (118)
T ss_dssp CCCCSSS-CHHHHSSCCEEEEEEESCSCCCCEEEEBTTSSSC--SEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTC
T ss_pred CCCccee-cccccCCceEEEEEECCCCccCEEEEcccCCCCC--CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCC
Confidence 4999998 4554331 111123588998753211 113 3899999999999999 8999999999999999999
Q ss_pred CHHHHHHHhcCC---CCCeEEEEEEeCC
Q 016195 232 SAFEVSSLLQGP---SETFVTIEVKHGN 256 (393)
Q Consensus 232 ~~~~v~~~L~g~---~G~~V~Ltv~r~~ 256 (393)
+++++..+|+.. .|+.|+|+|.|..
T Consensus 80 ~~~~~~~~l~~~~~~~g~~v~l~v~r~~ 107 (118)
T 1v6b_A 80 TLAEAEAALQKAWNQGGDWIDLVVAVCP 107 (118)
T ss_dssp BHHHHHHHHHHHHHHTCSEEEEEEECCC
T ss_pred CHHHHHHHHHHhhhcCCCeEEEEEEeCC
Confidence 888888887643 4889999999854
No 20
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=99.19 E-value=4.3e-12 Score=127.17 Aligned_cols=140 Identities=16% Similarity=0.286 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHhhhcccChHHHHHHHHHHHHhcCCCceeecCHHHHhhhc--cCce
Q 016195 102 EGIVEEAWQIVNDSFLDTGRHRWTPQNWQRKREDILSSSIQTRSKAHGIIKRMLASLGDPYTRFLSPAEFSKMA--RYDM 179 (393)
Q Consensus 102 ~~~f~~~W~~v~~~y~d~~~~~~~~~dW~~v~~~y~~~~i~t~~~~~~~i~~ml~~L~D~ht~~~~~~e~~~~~--~~~~ 179 (393)
.+.+.++|++....|++.. +++..+|.+ ..|..+..++..++|+++.|..+++.+... +...
T Consensus 152 ~~ti~qaf~~~y~~~l~~~--gi~~~~~~~--------------~~y~~~~~~~~~~~d~~~~~~~~~~~~~V~i~k~~g 215 (388)
T 3suz_A 152 AQSIGQAFSVAYQEFLRAN--GINPEDLSQ--------------KEYSDIINTQEMYNDDLIHFSNSENCKELQLEKHKG 215 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHH--TCCTTTSCH--------------HHHHHHHHHHHHHHHHHHHTCCSSCCEEEEECCCSS
T ss_pred HHHHHHHHHHHhhhhcccc--CcCccccch--------------hhhcccccccccccchhhhhcccccceEEEEECCCC
Confidence 5689999999999999764 467777722 345556677778888999998887765432 2223
Q ss_pred eeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCC-CCCeEEEEEEeCCC
Q 016195 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGP-SETFVTIEVKHGNC 257 (393)
Q Consensus 180 ~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~-~G~~V~Ltv~r~~~ 257 (393)
.++|+.+.....+.....++|..|.+||||+++| |++||+|++|||+++.+|+..++..++++. .+..++|++.|.+.
T Consensus 216 e~lG~~i~~~~~g~~~~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~~~~~v~l~v~r~~~ 295 (388)
T 3suz_A 216 EILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPP 295 (388)
T ss_dssp CCCCCCCBCC---CCSCCCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCSTTHHHHTTTCTTCSCEEEEEEECCS
T ss_pred CceeEEEEecCCCCcCCCEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhccCCCccccccccccc
Confidence 4677766542211111126899999999999999 999999999999999999878888888875 66789999999763
No 21
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Probab=99.17 E-value=6.5e-11 Score=92.79 Aligned_cols=69 Identities=25% Similarity=0.438 Sum_probs=60.5
Q ss_pred cCceeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEe
Q 016195 176 RYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH 254 (393)
Q Consensus 176 ~~~~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r 254 (393)
+....++||.+. +| .|..++++|||+++||+.||+|++|||+++.+++++++.++|+ ..|++|+|++..
T Consensus 12 k~~~g~~Gf~i~-----~g----~I~~v~~gspA~~aGl~~GD~Il~VNG~~v~~~~~~evv~llr-~~g~~V~L~v~p 80 (82)
T 1r6j_A 12 KDSTGHVGFIFK-----NG----KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILS-TSGTVVTITIMP 80 (82)
T ss_dssp CCTTSCCCEEEE-----TT----EEEEECTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHH-HSCSEEEEEEEE
T ss_pred ECCCCCeEEEEE-----CC----EEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHh-cCCCEEEEEEEe
Confidence 344567999874 24 3789999999999999999999999999999999999999999 889999999865
No 22
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.17 E-value=6.9e-12 Score=101.65 Aligned_cols=92 Identities=26% Similarity=0.411 Sum_probs=73.2
Q ss_pred eeecCHHHHhhhc---cCceeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHH
Q 016195 163 TRFLSPAEFSKMA---RYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSS 238 (393)
Q Consensus 163 t~~~~~~e~~~~~---~~~~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~ 238 (393)
+.|+++++++.+. .....|+|+.+....+.. ..++|..|.++|||+++| |++||+|++|||+++..++..++..
T Consensus 2 S~~~~~~~~~~~~v~l~~~~~g~G~~~~~~~~~~--~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~ 79 (103)
T 1wfv_A 2 SSGSSGQDFDYFTVDMEKGAKGFGFSIRGGREYK--MDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIE 79 (103)
T ss_dssp CCCCSCCCSCCEECCEECCTTSSSBCCEEETTTT--EEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHH
T ss_pred CCCCCccCceEEEEEEecCCCcCCEEEeccccCC--CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence 5677777765432 344567899887543211 258899999999999999 9999999999999999988888888
Q ss_pred HhcCCCCCeEEEEEEeCCC
Q 016195 239 LLQGPSETFVTIEVKHGNC 257 (393)
Q Consensus 239 ~L~g~~G~~V~Ltv~r~~~ 257 (393)
+++ ..|+.+.|+|.|++.
T Consensus 80 ~~~-~~g~~v~l~v~R~~~ 97 (103)
T 1wfv_A 80 LIK-SGGRRVRLLLKRGTG 97 (103)
T ss_dssp HHH-HHCSEECEEEECTTC
T ss_pred HHH-cCCCeEEEEEEECCC
Confidence 887 568899999999774
No 23
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=99.16 E-value=5e-11 Score=99.77 Aligned_cols=98 Identities=14% Similarity=0.195 Sum_probs=72.3
Q ss_pred cCCCceeecCHHHHhhh--ccCceeeeEEEEEEeeCC-CCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCH
Q 016195 158 LGDPYTRFLSPAEFSKM--ARYDMSGIGINLREVPDA-NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSA 233 (393)
Q Consensus 158 L~D~ht~~~~~~e~~~~--~~~~~~glGi~~~~~~~~-~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~ 233 (393)
.+|+|+.|+.+.+.+.. .++...++||.+....+. .+...++|..|.++|||+++| |++||+|++|||+++.+++.
T Consensus 12 ~~~~~~~~~~~~~~~~v~l~k~~~~~lGf~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~ 91 (118)
T 3b76_A 12 DLGTENLYFQSMHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSR 91 (118)
T ss_dssp ------CCCEEEEEEEEEEECCTTCCCCEEEEECSCSTTCCCCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCH
T ss_pred CCCccccccCCCCcEEEEEEeCCCCccCEEEecCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCH
Confidence 35789999887765542 244457899998753210 111248999999999999999 99999999999999999889
Q ss_pred HHHHHHhcCCCCCeEEEEEEeCC
Q 016195 234 FEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 234 ~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
.++..+++.. +..|+|+|.|..
T Consensus 92 ~~~~~~l~~~-~~~v~L~v~R~~ 113 (118)
T 3b76_A 92 SEAVALLKRT-SSSIVLKALEVK 113 (118)
T ss_dssp HHHHHHHHSC-CSEEEEEEEEEE
T ss_pred HHHHHHHHcC-CCeEEEEEEECC
Confidence 9999999854 778999998854
No 24
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=99.15 E-value=1.6e-10 Score=91.53 Aligned_cols=75 Identities=19% Similarity=0.245 Sum_probs=63.3
Q ss_pred eeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCCC
Q 016195 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (393)
Q Consensus 180 ~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~~ 257 (393)
.++|+.+....+.+ ..++|..|.++|||+++||++||+|++|||+++..+...++..+++. .|+.+.|++.|++.
T Consensus 13 ~~~G~~l~~~~~~~--~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~g~ 87 (91)
T 2pkt_A 13 GPWGFRLVGGKDFE--QPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIKG-CTDNLTLTVARSEH 87 (91)
T ss_dssp SCCSEEEEEEGGGT--EEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHT-CSSEEEEEEEEECC
T ss_pred CCCCEEEEccCCCC--CCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECCc
Confidence 46888886432211 25889999999999999999999999999999999988888888887 88999999999773
No 25
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=99.15 E-value=1.9e-10 Score=90.50 Aligned_cols=74 Identities=26% Similarity=0.426 Sum_probs=62.0
Q ss_pred eeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 180 ~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
.++||.+....+.. ..++|..|.++|||+++||++||+|++|||+++..+...++..+++.. |+.+.|++.|++
T Consensus 13 ~~~G~~l~~g~~~~--~~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~g 86 (88)
T 2uzc_A 13 APWGFRLQGGKDFN--MPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIKGC-TGSLNMTLQRES 86 (88)
T ss_dssp SCCCEEEEEEGGGT--EEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEECCC
T ss_pred CcccEEEECcCCCC--CCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEeCC
Confidence 46888886432211 258999999999999999999999999999999999888888888755 889999999876
No 26
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=99.14 E-value=2e-10 Score=90.15 Aligned_cols=74 Identities=20% Similarity=0.293 Sum_probs=62.8
Q ss_pred eeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 180 ~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
.++|+.+....+.. ..++|..|.++|||+++||++||+|++|||+++..++..++..+++... +.+.|++.|++
T Consensus 12 ~~lG~~l~~~~~~~--~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~~ 85 (87)
T 2pa1_A 12 APWGFRITGGRDFH--TPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSP-SPLRLQLDRIT 85 (87)
T ss_dssp SCCSEEEEEEGGGT--EEEEEEEECSSSHHHHTTCCTTCEEEEETTEESTTCCHHHHHHHHHTCC-SSEEEEEEECC
T ss_pred CccCEEEecccCCC--CCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEecC
Confidence 57888886432211 2588999999999999999999999999999999988899999998765 89999999976
No 27
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=99.14 E-value=1.7e-10 Score=92.54 Aligned_cols=76 Identities=26% Similarity=0.395 Sum_probs=63.9
Q ss_pred eeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCCC
Q 016195 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (393)
Q Consensus 179 ~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~~ 257 (393)
..++|+.+....+..+ .++|..|.++|||+++| |++||+|++|||+++.+++..++..+++ ..|+.+.|++.|++.
T Consensus 15 ~~~lG~~i~~~~~~~~--~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~-~~g~~v~l~v~R~~~ 91 (97)
T 1n7e_A 15 GGPLGITISGTEEPFD--PIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQ-MAGETVTLKIKKQTD 91 (97)
T ss_dssp TSCCCEEEECCSSTTS--CCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHH-TCCSEEEEEEECCCC
T ss_pred CCCcCEEEEcccCCCC--CEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCeEEEEEEeCCC
Confidence 3568999865432112 47899999999999999 9999999999999999988889988888 578999999999774
No 28
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=99.13 E-value=2.4e-10 Score=90.44 Aligned_cols=74 Identities=22% Similarity=0.280 Sum_probs=60.9
Q ss_pred eeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 180 ~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
.|+|+.+....+.. .++|..|.++|||+++||++||+|++|||+++.+++..++..+++...++.+.+.++|++
T Consensus 14 ~g~G~~~~~~~~~~---g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~~~~r~~ 87 (91)
T 1g9o_A 14 NGYGFHLHGEKGKL---GQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPET 87 (91)
T ss_dssp TBCCEEEEECTTCS---SEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEECCCC
T ss_pred CcccEEEEecCCCC---CEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEcCCc
Confidence 47899887543222 388999999999999999999999999999999988899999998766666666666654
No 29
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Probab=99.13 E-value=6.1e-11 Score=97.02 Aligned_cols=94 Identities=22% Similarity=0.326 Sum_probs=71.8
Q ss_pred CceeecCHHHHhhh---c--cCceeeeEEEEEEeeCC---CCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCC
Q 016195 161 PYTRFLSPAEFSKM---A--RYDMSGIGINLREVPDA---NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGK 231 (393)
Q Consensus 161 ~ht~~~~~~e~~~~---~--~~~~~glGi~~~~~~~~---~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~ 231 (393)
+|+ |+++++++.+ . ++...|+|+.+....+. .....++|..|.++|||+++| |++||+|++|||+++..+
T Consensus 2 s~~-~~~~~~~~~~~v~l~r~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~ 80 (108)
T 2jre_A 2 SHG-YSDASGFSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGM 80 (108)
T ss_dssp CCC-CCSSSSCEEEEEEEECCSTTSCCSEEEECCCCCSCSSCCCCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTS
T ss_pred Ccc-cccccCcEEEEEEEEecCCCCCcCEEEEcccCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCC
Confidence 454 4445665532 2 45678899998642110 001137899999999999999 999999999999999998
Q ss_pred CHHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 232 SAFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 232 ~~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
+..++..+++. .|..+.|+|.|++
T Consensus 81 ~~~~~~~~l~~-~g~~v~l~v~R~~ 104 (108)
T 2jre_A 81 AQSDVVEVLRN-AGNPVRLLLIRRL 104 (108)
T ss_dssp CHHHHHHHHHH-HCSEEEEEEEECC
T ss_pred CHHHHHHHHHc-CCCeEEEEEEeCC
Confidence 88888888876 7889999999976
No 30
>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}
Probab=99.12 E-value=5.4e-10 Score=91.41 Aligned_cols=88 Identities=26% Similarity=0.409 Sum_probs=67.3
Q ss_pred eeeeEEEEEEeeCCC---CeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEe
Q 016195 179 MSGIGINLREVPDAN---GVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH 254 (393)
Q Consensus 179 ~~glGi~~~~~~~~~---G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r 254 (393)
..++||.+...-+.. +...++|..|.++|||+++| |++||+|++|||+++.+++..++..+++. .+..++|++.|
T Consensus 12 ~~~~Gf~i~gG~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R 90 (106)
T 4amh_A 12 SKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKN-TSDFVYLKVAK 90 (106)
T ss_dssp CCCSCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHS-CCSEEEEEEEC
T ss_pred CCccCEEEEeccCCccccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhC-CCCeEEEEEEe
Confidence 467788876321100 01148999999999999999 99999999999999999888888888875 46799999999
Q ss_pred CCC-CceEEEEEEe
Q 016195 255 GNC-GPIESIQVQR 267 (393)
Q Consensus 255 ~~~-~~~~~v~l~r 267 (393)
++. ....++++++
T Consensus 91 ~~~~~~~~~v~l~~ 104 (106)
T 4amh_A 91 PGSGEKIMEIKLIK 104 (106)
T ss_dssp CSSSCSEEEEEEEC
T ss_pred CCCCCeEEEEEEec
Confidence 874 3455666553
No 31
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=99.12 E-value=9e-11 Score=99.17 Aligned_cols=79 Identities=19% Similarity=0.245 Sum_probs=64.7
Q ss_pred CceeeeEEEEEEeeCC-CCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcC-CCCHHHHHHHhcCCCCCeEEEEEE
Q 016195 177 YDMSGIGINLREVPDA-NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVR-GKSAFEVSSLLQGPSETFVTIEVK 253 (393)
Q Consensus 177 ~~~~glGi~~~~~~~~-~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~-~~~~~~v~~~L~g~~G~~V~Ltv~ 253 (393)
+...|+||.+....+. .+...++|..|.++|||+++| |++||+|++|||+++. +++..++..+++. .+..|.|+|.
T Consensus 34 ~~~~~lG~~i~g~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l~~-~~~~v~l~v~ 112 (128)
T 2db5_A 34 PSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQ-TTGSLRLIVA 112 (128)
T ss_dssp CSSSCCCCEEEEEECSSSSCEEEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHHHH-CCSEEEEEEE
T ss_pred CCCCccCEEEecccCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCHHHHHHHHHc-CCCeEEEEEE
Confidence 3446889988643221 112258999999999999999 9999999999999997 8889999999986 6789999999
Q ss_pred eCC
Q 016195 254 HGN 256 (393)
Q Consensus 254 r~~ 256 (393)
|+.
T Consensus 113 r~~ 115 (128)
T 2db5_A 113 REP 115 (128)
T ss_dssp ECC
T ss_pred cCC
Confidence 976
No 32
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Probab=99.12 E-value=3.3e-10 Score=97.46 Aligned_cols=80 Identities=24% Similarity=0.264 Sum_probs=65.1
Q ss_pred ceeeeEEEEEEeeCC----------CCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCe
Q 016195 178 DMSGIGINLREVPDA----------NGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETF 247 (393)
Q Consensus 178 ~~~glGi~~~~~~~~----------~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~ 247 (393)
...++|+.+....+. +....++|..|.++|||++|||++||+|++|||+++..++..++...++...|+.
T Consensus 36 ~~~~lG~~i~~g~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~g~~ 115 (139)
T 2vz5_A 36 ENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEV 115 (139)
T ss_dssp TEEECSEEEEECTTSCGGGCSSCSSTTCCCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHCCTTCSE
T ss_pred CcccccEEEEccccCChhhhhhcccCCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCE
Confidence 446789987531110 0011489999999999999999999999999999999888899999998888999
Q ss_pred EEEEEEeCCC
Q 016195 248 VTIEVKHGNC 257 (393)
Q Consensus 248 V~Ltv~r~~~ 257 (393)
+.|+|.|++.
T Consensus 116 v~l~v~R~g~ 125 (139)
T 2vz5_A 116 VRLLVTRQSL 125 (139)
T ss_dssp EEEEEEECC-
T ss_pred EEEEEEECCE
Confidence 9999999874
No 33
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=99.11 E-value=2.4e-10 Score=90.18 Aligned_cols=74 Identities=24% Similarity=0.326 Sum_probs=61.5
Q ss_pred eeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 180 ~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
.++||.+....+.. ..++|..|.++|||+++||++||+|++|||+++..++..++..+++.. |+.+.|++.|++
T Consensus 13 ~~~G~~l~gg~~~~--~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~~ 86 (89)
T 2q3g_A 13 APWGFRLQGGKDFN--VPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRAC-GERLSLGLSRAI 86 (89)
T ss_dssp SCCCEEEEEEGGGT--EEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHHTC-TTEEEEEEEEEC
T ss_pred CcccEEEECcCCCC--CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCEEEEEEEeCC
Confidence 57888886432211 247899999999999999999999999999999998888888888754 788999999876
No 34
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.11 E-value=1.1e-10 Score=96.20 Aligned_cols=96 Identities=17% Similarity=0.225 Sum_probs=71.9
Q ss_pred CceeecCHHHHhhhccCceeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHH
Q 016195 161 PYTRFLSPAEFSKMARYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSL 239 (393)
Q Consensus 161 ~ht~~~~~~e~~~~~~~~~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~ 239 (393)
+.+.+..+.+++...-....|+||.+....+......++|..|.++|||+++| |++||+|++|||+++.+++++++.++
T Consensus 6 s~s~~~~~~~~~~v~l~k~~glG~~i~gg~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~ 85 (109)
T 1wi4_A 6 SGSPLDRDPAFRVITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSI 85 (109)
T ss_dssp SCCSCCCCTTEEEEEECCSSCCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHH
T ss_pred CCCCCCCCCcEEEEEEeCCCccCEEEEeccCCCCCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 34445555555433211127899998742111111138999999999999999 99999999999999999999999999
Q ss_pred hcCCC---CCeEEEEEEeCC
Q 016195 240 LQGPS---ETFVTIEVKHGN 256 (393)
Q Consensus 240 L~g~~---G~~V~Ltv~r~~ 256 (393)
|++.. +..++|++.|++
T Consensus 86 l~~~~~r~~~~~~l~v~R~~ 105 (109)
T 1wi4_A 86 ITRAKLRSESPWEIAFIRSG 105 (109)
T ss_dssp HHHSCCSSSSCEEEEEECCC
T ss_pred HHccccCCCceEEEEEEeCC
Confidence 98776 889999999876
No 35
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=99.09 E-value=4.3e-10 Score=87.82 Aligned_cols=73 Identities=27% Similarity=0.411 Sum_probs=60.1
Q ss_pred eeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCC-CCCeEEEEEEe
Q 016195 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGP-SETFVTIEVKH 254 (393)
Q Consensus 180 ~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~-~G~~V~Ltv~r 254 (393)
.|+|+.+....+ +...++|..|.++|||+++| |++||+|++|||+++.+++..++..+++.. .|+++.|++.|
T Consensus 11 ~g~G~~i~~~~~--~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R 85 (85)
T 2i04_A 11 RGFGFTVVGGDE--PDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCR 85 (85)
T ss_dssp TBSSEEEEECCS--TTBCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCTTCEEEEEEEC
T ss_pred CCCCEEEEcccC--CCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEC
Confidence 578888864221 11248999999999999999 999999999999999998888988888764 38889998865
No 36
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=99.09 E-value=6.5e-11 Score=93.92 Aligned_cols=73 Identities=26% Similarity=0.328 Sum_probs=59.4
Q ss_pred eeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCCC
Q 016195 181 GIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (393)
Q Consensus 181 glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~~ 257 (393)
++|+.+....+.. .++|..|.++|||+++||++||+|++|||+++.+++..++..+++.. |+.+.|++.|++.
T Consensus 15 ~~G~~l~~~~~~~---g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~r~~~ 87 (91)
T 2vsp_A 15 GYGFHLNAIRGLP---GSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSS-GKNVTLLVCGKKA 87 (91)
T ss_dssp BTSCCCBCCTTCS---CCBC-CCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHTTS-CSEEEEEEEC---
T ss_pred cccEEEEeccCCC---CeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEEeCCc
Confidence 6788775433222 36899999999999999999999999999999988889999999876 8999999999763
No 37
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.09 E-value=4.4e-10 Score=92.22 Aligned_cols=78 Identities=32% Similarity=0.484 Sum_probs=64.4
Q ss_pred cCceeeeEEEEEEee-------CCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeE
Q 016195 176 RYDMSGIGINLREVP-------DANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFV 248 (393)
Q Consensus 176 ~~~~~glGi~~~~~~-------~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V 248 (393)
.+...|+||.+.... ... .++|..|.++|||+++||++||+|++|||+++......++...++. .|+.+
T Consensus 22 ~~~~~glG~~i~~g~~~~~~~~~~~---g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~v 97 (110)
T 1x5q_A 22 LRQTGGLGISIAGGKGSTPYKGDDE---GIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRG-AGTAV 97 (110)
T ss_dssp ECSSSSCSEEEEECTTSCCSSTTCC---SEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHS-CCSEE
T ss_pred ecCCCeeeEEEEccccCCccccCCC---CEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHhhC-CCCeE
Confidence 345789999986321 112 4889999999999999999999999999999999877777777765 78999
Q ss_pred EEEEEeCCC
Q 016195 249 TIEVKHGNC 257 (393)
Q Consensus 249 ~Ltv~r~~~ 257 (393)
.|+|.|++.
T Consensus 98 ~l~v~R~g~ 106 (110)
T 1x5q_A 98 QMRVWRESG 106 (110)
T ss_dssp EEEEEECSS
T ss_pred EEEEEECCc
Confidence 999999873
No 38
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=99.08 E-value=4e-10 Score=90.12 Aligned_cols=80 Identities=30% Similarity=0.440 Sum_probs=62.9
Q ss_pred CceeeeEEEEEEeeCC----CCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEE
Q 016195 177 YDMSGIGINLREVPDA----NGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEV 252 (393)
Q Consensus 177 ~~~~glGi~~~~~~~~----~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv 252 (393)
+...|+||.+....+. +....++|..|.++|||+++||++||+|++|||+++..+...++...++. .|+.+.|++
T Consensus 11 ~~~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v 89 (97)
T 2w4f_A 11 RQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRG-AGTAVQMRV 89 (97)
T ss_dssp CBTTBSSEEEEECTTSCCSBTTBCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHT-SCSEEEEEE
T ss_pred eCCCceeEEEECCccCCcccCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhC-CCCeEEEEE
Confidence 3467899998642110 00114889999999999999999999999999999999877666666664 789999999
Q ss_pred EeCCC
Q 016195 253 KHGNC 257 (393)
Q Consensus 253 ~r~~~ 257 (393)
.|++.
T Consensus 90 ~R~g~ 94 (97)
T 2w4f_A 90 WRERE 94 (97)
T ss_dssp ECCSS
T ss_pred EeCCc
Confidence 99873
No 39
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=99.07 E-value=3.1e-10 Score=93.16 Aligned_cols=78 Identities=17% Similarity=0.271 Sum_probs=63.2
Q ss_pred eeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCC--CCCeEEEEEEeCC
Q 016195 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGP--SETFVTIEVKHGN 256 (393)
Q Consensus 180 ~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~--~G~~V~Ltv~r~~ 256 (393)
.++|+.+....+..+...++|..|.++|||+++| |++||+|++|||+++.+++++++..+|+.. .+..|+|+|.|.+
T Consensus 17 ~~lG~~i~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~v~l~v~R~~ 96 (108)
T 3cbz_A 17 NFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKSG 96 (108)
T ss_dssp CCCCEEEEEECSSTTCCEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHHHTSSSCEEEEEECCC
T ss_pred CccCEEEEcCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcccCCCeEEEEEEeCC
Confidence 5688887653211112258999999999999999 999999999999999999899999999765 4557999999976
Q ss_pred C
Q 016195 257 C 257 (393)
Q Consensus 257 ~ 257 (393)
.
T Consensus 97 ~ 97 (108)
T 3cbz_A 97 G 97 (108)
T ss_dssp C
T ss_pred C
Confidence 4
No 40
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*
Probab=99.07 E-value=2.1e-10 Score=94.11 Aligned_cols=79 Identities=23% Similarity=0.257 Sum_probs=62.5
Q ss_pred CceeeeEEEEEEeeCCCC----------eeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCC
Q 016195 177 YDMSGIGINLREVPDANG----------VVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSET 246 (393)
Q Consensus 177 ~~~~glGi~~~~~~~~~G----------~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~ 246 (393)
....|+||.+....+... ...++|..|.++|||+++||++||+|++|||+++..++..++..+++.. |.
T Consensus 16 ~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~-~~ 94 (109)
T 1q3o_A 16 KDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQG-GN 94 (109)
T ss_dssp CTTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHT-TT
T ss_pred CCCCCCcEEEEeccCCCCcccccccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CC
Confidence 345689999875321100 0027899999999999999999999999999999999888988888754 77
Q ss_pred eEEEEEEeCC
Q 016195 247 FVTIEVKHGN 256 (393)
Q Consensus 247 ~V~Ltv~r~~ 256 (393)
.+.|+|.|..
T Consensus 95 ~v~l~v~~~~ 104 (109)
T 1q3o_A 95 TLMVKVVMVT 104 (109)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEECC
Confidence 8999888754
No 41
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=99.06 E-value=7.1e-10 Score=87.68 Aligned_cols=73 Identities=22% Similarity=0.313 Sum_probs=59.5
Q ss_pred eeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeC
Q 016195 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (393)
Q Consensus 179 ~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~ 255 (393)
..++|+.+....+..| ++|..|.++|||+++||++||+|++|||+++..+...++...++ ..|+.+.|++.|+
T Consensus 18 ~~~~G~~~~~~~~~~g---v~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~-~~g~~v~l~v~R~ 90 (91)
T 1m5z_A 18 MEDFGFSVADGLLEKG---VYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIA-ESGNKLDLVISRN 90 (91)
T ss_dssp CSSSSEEEEECTTSSC---EEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHH-TSTTEEEEEEEEC
T ss_pred CCCccEEEEeccCCCC---EEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCEEEEEEEeC
Confidence 3467888764332233 88999999999999999999999999999999988777777776 3588999999875
No 42
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=99.06 E-value=5.4e-10 Score=89.20 Aligned_cols=75 Identities=27% Similarity=0.378 Sum_probs=62.7
Q ss_pred eeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCCC
Q 016195 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (393)
Q Consensus 179 ~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~~ 257 (393)
..++|+.+....+..| ++|..|.++|||+++| |++||+|++|||+++.+.+..++...++ ..|+.+.|++.|++.
T Consensus 15 ~~~lG~~~~~~~~~~g---v~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~-~~g~~v~l~v~R~~~ 90 (95)
T 2vwr_A 15 GEQLGIKLVRRTDEPG---VFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQ-ASGERVNLTIARPGK 90 (95)
T ss_dssp TCCCCEEEEECSSSCS---EEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHH-HCCSEEEEEEEEESC
T ss_pred CCcccEEEEeccCCCC---EEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCEEEEEEEcCCc
Confidence 4678888865433333 8999999999999999 9999999999999999988888777776 358999999999763
No 43
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=99.06 E-value=7.8e-10 Score=88.93 Aligned_cols=77 Identities=27% Similarity=0.367 Sum_probs=62.0
Q ss_pred eeeEEEEEEeeC--CC-Ce--eEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEe
Q 016195 180 SGIGINLREVPD--AN-GV--VTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH 254 (393)
Q Consensus 180 ~glGi~~~~~~~--~~-G~--~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r 254 (393)
.++||.+..... ++ +. ..++|..|.++|||++|||++||+|++|||+++.+++..++...++ ..|+.+.|++.|
T Consensus 13 ~~~Gf~l~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~-~~g~~v~l~v~r 91 (99)
T 3khf_A 13 KKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLL-KSGNKISLRTTA 91 (99)
T ss_dssp CCCCEEEEEEEEESSSSSCEEEEEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHH-HSCSEEEEEEEC
T ss_pred CCCcEEEEecccccCccccccCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHh-cCCCEEEEEEEE
Confidence 467777754321 11 10 1357999999999999999999999999999999888889888887 678999999999
Q ss_pred CCC
Q 016195 255 GNC 257 (393)
Q Consensus 255 ~~~ 257 (393)
.+.
T Consensus 92 ~~~ 94 (99)
T 3khf_A 92 LEN 94 (99)
T ss_dssp SCS
T ss_pred CCC
Confidence 774
No 44
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=99.06 E-value=2.6e-10 Score=90.13 Aligned_cols=74 Identities=19% Similarity=0.303 Sum_probs=63.2
Q ss_pred ceeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhh-cCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 178 DMSGIGINLREVPDANGVVTLKVLGLILDGPAHS-AGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 178 ~~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~-AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
...++|+.+... +++ .++|..|.++|||++ +||++||+|++|||+++.+++++++.+++++..+ .++|++.|++
T Consensus 11 ~~~~lG~~i~~~--~~~--~~~I~~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~-~v~l~v~r~~ 85 (88)
T 1kwa_A 11 TDEPMGITLKMN--ELN--HCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRG-SITFKIVPSY 85 (88)
T ss_dssp SSSCCCEEEECS--CGG--GEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCE-EEEEEEECCC
T ss_pred CCCceeEEEEeC--CCC--CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCC-cEEEEEECCc
Confidence 346789988642 123 489999999999999 8899999999999999998889999999987777 8999998876
No 45
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.06 E-value=1.9e-10 Score=97.17 Aligned_cols=80 Identities=20% Similarity=0.354 Sum_probs=65.9
Q ss_pred CceeeeEEEEEEeeCCC---CeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEE
Q 016195 177 YDMSGIGINLREVPDAN---GVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEV 252 (393)
Q Consensus 177 ~~~~glGi~~~~~~~~~---G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv 252 (393)
....++||.+....+.. ....++|..|.++|||+++| |++||+|++|||+++..++..++..++++ .|..+.|+|
T Consensus 24 ~~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~-~~~~v~l~v 102 (129)
T 2dmz_A 24 KDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRN-AGQVVHLTL 102 (129)
T ss_dssp CTTCCCCEEEEEECCCSSSCCCCEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCHHHHHHHHHH-CCSSEEEEE
T ss_pred CCCCCcCEEEEeecCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEE
Confidence 34578899887532100 01158999999999999999 99999999999999999888999999987 889999999
Q ss_pred EeCCC
Q 016195 253 KHGNC 257 (393)
Q Consensus 253 ~r~~~ 257 (393)
.|++.
T Consensus 103 ~R~~~ 107 (129)
T 2dmz_A 103 VRRKT 107 (129)
T ss_dssp EEESS
T ss_pred EeCCc
Confidence 99774
No 46
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.06 E-value=2.5e-10 Score=92.66 Aligned_cols=80 Identities=26% Similarity=0.442 Sum_probs=64.5
Q ss_pred CceeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeC
Q 016195 177 YDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (393)
Q Consensus 177 ~~~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~ 255 (393)
..+.|+||.+....+..+...++|..|.++|||+++| |++||+|++|||+++..+...++..+++. .|+.+.|+|.|+
T Consensus 19 ~~~~g~G~~l~~~~~~~~~~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~ 97 (104)
T 2djt_A 19 RGYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRA-GGPQLHLVIRRP 97 (104)
T ss_dssp CCSSSCCEEEECCEETTEECCCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHHHH-TCSEEEEEECCC
T ss_pred eCCCCccEEEEeccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEEC
Confidence 3457899998652211001147899999999999999 99999999999999999888888888875 688999999987
Q ss_pred CC
Q 016195 256 NC 257 (393)
Q Consensus 256 ~~ 257 (393)
+.
T Consensus 98 g~ 99 (104)
T 2djt_A 98 LS 99 (104)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 47
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A
Probab=99.06 E-value=1.2e-09 Score=88.47 Aligned_cols=79 Identities=24% Similarity=0.253 Sum_probs=63.4
Q ss_pred CceeeeEEEEEEeeCC----------CCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCC
Q 016195 177 YDMSGIGINLREVPDA----------NGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSET 246 (393)
Q Consensus 177 ~~~~glGi~~~~~~~~----------~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~ 246 (393)
+...++|+.+....+. .+...++|..|.++|||+++||++||+|++|||+++...+++++...++...|+
T Consensus 16 ~~~~~lG~~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~ 95 (104)
T 3sfj_A 16 GENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEE 95 (104)
T ss_dssp TTEEECSEEEEECTTSCGGGCSSCSSTTCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHTCTTCS
T ss_pred CCCCcccEEEECccccCccccccccCCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCC
Confidence 3456789988721110 001138899999999999999999999999999999998888999999888889
Q ss_pred eEEEEEEeC
Q 016195 247 FVTIEVKHG 255 (393)
Q Consensus 247 ~V~Ltv~r~ 255 (393)
.+.|++.|.
T Consensus 96 ~v~l~v~R~ 104 (104)
T 3sfj_A 96 VVRLLVTRQ 104 (104)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEEcC
Confidence 999999873
No 48
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Probab=99.06 E-value=2.9e-10 Score=91.23 Aligned_cols=74 Identities=20% Similarity=0.268 Sum_probs=61.1
Q ss_pred CceeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeC
Q 016195 177 YDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (393)
Q Consensus 177 ~~~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~ 255 (393)
....|+|+.+... ..| ++|..|.++|||+++| |++||+|++|||+++.+....++..++++. +.++.|++.|.
T Consensus 17 ~~~~glG~~~~~~--~~g---v~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~ 90 (96)
T 2qkv_A 17 KAGKELGLSLSPN--EIG---CTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGA-NGKVSMEVTRP 90 (96)
T ss_dssp BTTBCCCEEEEEC--SSS---EEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTC-SSEEEEEEECC
T ss_pred CCCCCccEEEEeC--CCc---EEEEEeCCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcC-CCcEEEEEEeC
Confidence 3456889887642 234 8999999999999999 999999999999999987778877777754 46799999986
Q ss_pred C
Q 016195 256 N 256 (393)
Q Consensus 256 ~ 256 (393)
.
T Consensus 91 ~ 91 (96)
T 2qkv_A 91 K 91 (96)
T ss_dssp C
T ss_pred C
Confidence 5
No 49
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=99.05 E-value=6e-10 Score=101.07 Aligned_cols=108 Identities=15% Similarity=0.203 Sum_probs=78.8
Q ss_pred cCCCceeecCHHHHhhh-ccCceeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCC--CCH
Q 016195 158 LGDPYTRFLSPAEFSKM-ARYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRG--KSA 233 (393)
Q Consensus 158 L~D~ht~~~~~~e~~~~-~~~~~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~--~~~ 233 (393)
..|||+.++.+.+.... ......|+|+.+....+..-...++|..|.++|||+++| |+.||+|++|||+++.. .++
T Consensus 6 ~~dp~~~~~~~~~~~~v~~~~~~~~lG~~i~~g~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~ 85 (206)
T 3r0h_A 6 PQEPATAEIKPNKKILIELKVEKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTT 85 (206)
T ss_dssp --CTTTCCCCTTSCEEEEEECTTSCCCEEEECCSSSSCCSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECCGGGSCH
T ss_pred CCCCCcCCCCCCCEEEEEEEeCCCCcCEEEecccCCCCCCCeEEEEECCCChHHhcCCCCCCCEEEEECCEEcCCCccCH
Confidence 45999999998774432 123457899988642211000137899999999999998 99999999999999999 778
Q ss_pred HHHHHHhcCCCCCeEEEEEEeCCCCceEEEEE
Q 016195 234 FEVSSLLQGPSETFVTIEVKHGNCGPIESIQV 265 (393)
Q Consensus 234 ~~v~~~L~g~~G~~V~Ltv~r~~~~~~~~v~l 265 (393)
.++..+++...+..+.|+|.|.+.....++++
T Consensus 86 ~~~~~~~~~~~~~~v~l~v~R~~~~~~~~~~v 117 (206)
T 3r0h_A 86 LKVHQLFHTTYEKAVTLTVFRADPPELEKFNV 117 (206)
T ss_dssp HHHHHHHHSCCSSEEEEEEECCSSCCEEEEEE
T ss_pred HHHHHHHHhcCCCceEEEEEecccCCCcEEEE
Confidence 88888888655555999999987544444444
No 50
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=99.05 E-value=1e-09 Score=88.84 Aligned_cols=89 Identities=19% Similarity=0.258 Sum_probs=67.1
Q ss_pred CCceeecCHHHHhhhccCceeeeEEEEEEeeCCC-------CeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCC
Q 016195 160 DPYTRFLSPAEFSKMARYDMSGIGINLREVPDAN-------GVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGK 231 (393)
Q Consensus 160 D~ht~~~~~~e~~~~~~~~~~glGi~~~~~~~~~-------G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~ 231 (393)
|||+.++.+.+ ..++|+.+....+.. ....++|..|.++|||+++| |++||+|++|||+++.++
T Consensus 4 dp~~v~l~~~~--------~~~lG~~~~~~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~ 75 (103)
T 2fcf_A 4 QPRRVELWREP--------SKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDA 75 (103)
T ss_dssp SCEEEEECCCC---------CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTC
T ss_pred CCEEEEEEeCC--------CCceeEEEEccCCCCcccccCCCCCCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEECCCC
Confidence 88888887543 234666654321100 00148899999999999999 999999999999999998
Q ss_pred CHHHHHHHhcCCCCCeEEEEEEeCCC
Q 016195 232 SAFEVSSLLQGPSETFVTIEVKHGNC 257 (393)
Q Consensus 232 ~~~~v~~~L~g~~G~~V~Ltv~r~~~ 257 (393)
+..++..++++.. ..+.|+|.|...
T Consensus 76 ~~~~~~~~l~~~~-~~v~l~v~r~~~ 100 (103)
T 2fcf_A 76 SHEQAVEAIRKAG-NPVVFMVQSIIS 100 (103)
T ss_dssp CHHHHHHHHHTCC-SSEEEEEECCCC
T ss_pred CHHHHHHHHHhCC-CcEEEEEEECCC
Confidence 8899999998764 489999998763
No 51
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=99.05 E-value=5e-10 Score=88.74 Aligned_cols=75 Identities=32% Similarity=0.434 Sum_probs=62.0
Q ss_pred ceeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 178 DMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 178 ~~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
...++|+.+....+.. .++|..|.++|||+++| |++||+|++|||+++.+....++..+++. .+..+.|++.|.+
T Consensus 14 ~~~~lG~~~~~~~~~~---gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~~ 89 (92)
T 2qg1_A 14 PGKGLGLSIVGKRNDT---GVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKC-SLGTVTLEVGRIS 89 (92)
T ss_dssp TTSCCSEEEECCSSSC---SCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHH-CCSEEEEEEECCC
T ss_pred CCCcccEEEEeccCCC---CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEccc
Confidence 3467899886543222 37899999999999999 99999999999999999878888877764 5678999999875
No 52
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=99.05 E-value=4e-10 Score=88.67 Aligned_cols=73 Identities=26% Similarity=0.493 Sum_probs=58.2
Q ss_pred eeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhc-CCCCCeEEEEEEeCC
Q 016195 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQ-GPSETFVTIEVKHGN 256 (393)
Q Consensus 179 ~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~-g~~G~~V~Ltv~r~~ 256 (393)
..|+|+.+...++..+ ++|..+ ++|||+ +||++||+|++|||+++..+...++...++ .+.|+++.|++.|++
T Consensus 13 ~~g~G~~~~~~~~~~~---~~v~~v-~~spA~-aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g 86 (88)
T 3bpu_A 13 PMGFGFTIADSPGGGG---QRVKQI-VDSPRS-RGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLLVQRQT 86 (88)
T ss_dssp TTBSSCEEEECTTSSS---EEEEEC-CC--CC-TTCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEEEC
T ss_pred CCceeEEEEecCCCCc---EEEEEe-cCChhH-hCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCCEEEEEEEeCC
Confidence 3678999875433223 667665 999999 999999999999999999988888888887 567899999999865
No 53
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=99.05 E-value=2.4e-10 Score=95.76 Aligned_cols=81 Identities=19% Similarity=0.292 Sum_probs=62.4
Q ss_pred cCceeeeEEEEEEeeC-CCCeeEEEEEEEcCCChhhhc-CCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEE
Q 016195 176 RYDMSGIGINLREVPD-ANGVVTLKVLGLILDGPAHSA-GVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVK 253 (393)
Q Consensus 176 ~~~~~glGi~~~~~~~-~~G~~~l~V~~V~~gsPA~~A-GL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~ 253 (393)
++...|+||.+....+ ..+...++|..|.++|||+++ ||++||+|++|||+++.+++..++..+++.. +.+++|+|.
T Consensus 32 k~~~~~lGf~i~gg~~~~~~~~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~-~~~v~l~v~ 110 (120)
T 2iwo_A 32 KGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNA-SGSIEMQVV 110 (120)
T ss_dssp C----CCCEEEEEEEEETTEEEEEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCBHHHHHHHHHHC-CSEEEEEEE
T ss_pred cCCCCCCCEEEecccCCCCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEE
Confidence 3445688998864211 001125889999999999999 8999999999999999999889999888865 567999999
Q ss_pred eCCC
Q 016195 254 HGNC 257 (393)
Q Consensus 254 r~~~ 257 (393)
|++.
T Consensus 111 r~g~ 114 (120)
T 2iwo_A 111 AGGD 114 (120)
T ss_dssp CCTT
T ss_pred ECCc
Confidence 9874
No 54
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.05 E-value=2.4e-11 Score=102.53 Aligned_cols=92 Identities=24% Similarity=0.350 Sum_probs=71.8
Q ss_pred CCceeecCHHHHh-hhc---cCceeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHH
Q 016195 160 DPYTRFLSPAEFS-KMA---RYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFE 235 (393)
Q Consensus 160 D~ht~~~~~~e~~-~~~---~~~~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~ 235 (393)
|+|+.|+++++++ .+. .+.+.|.... ..+... .++|..|.++|||+++||++||+|++|||+++.+++..+
T Consensus 26 ~~~t~y~~~~~~~~~~~~~~~G~~~G~~~~--~~~~~~---gv~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~ 100 (126)
T 2yuy_A 26 RHFIVYPPESAIQFSYKDEENGNRGGKQRN--RLEPMD---TIFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQ 100 (126)
T ss_dssp CCCCCCCCSSCCCSCSSSCCCCSCCCTTSC--CCCCCC---CCCBCCCCSSSHHHHHTCCSSCCCCEETTEECSSCCHHH
T ss_pred cCccccCCHHHHHHHHHhhcCcceeceeee--cccCCC---CEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHH
Confidence 8999999998876 332 3455552111 111112 378999999999999999999999999999999888999
Q ss_pred HHHHhcCCCCCeEEEEEEeCCC
Q 016195 236 VSSLLQGPSETFVTIEVKHGNC 257 (393)
Q Consensus 236 v~~~L~g~~G~~V~Ltv~r~~~ 257 (393)
+..+|+.. |+.+.|+|.|.+.
T Consensus 101 ~~~~l~~~-g~~v~l~v~r~~~ 121 (126)
T 2yuy_A 101 VIALIQNS-DTTLELSVMPKDS 121 (126)
T ss_dssp HHHHHHTC-TTEEEEECCCCCC
T ss_pred HHHHHHcC-CCEEEEEEEECCC
Confidence 99999864 8999999998764
No 55
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=99.04 E-value=5.3e-10 Score=89.47 Aligned_cols=78 Identities=21% Similarity=0.348 Sum_probs=64.1
Q ss_pred eeeeEEEEEEeeCC--CCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeC
Q 016195 179 MSGIGINLREVPDA--NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (393)
Q Consensus 179 ~~glGi~~~~~~~~--~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~ 255 (393)
..|+||.+....+. ++...++|..|.++|||+++| |++||+|++|||+++..++..++..+++. .|+.+.|++.|+
T Consensus 13 ~~~lG~~i~~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~ 91 (97)
T 2jil_A 13 GNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQ-CGQEAALLIEYD 91 (97)
T ss_dssp TTBCSEEEEEECCSCC--CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHH-SCSEEEEEEEEE
T ss_pred CCccCEEEeCcccCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeC
Confidence 35788888653210 012258899999999999999 99999999999999999888999999986 889999999997
Q ss_pred CC
Q 016195 256 NC 257 (393)
Q Consensus 256 ~~ 257 (393)
+.
T Consensus 92 ~~ 93 (97)
T 2jil_A 92 VS 93 (97)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 56
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=99.04 E-value=1e-09 Score=88.01 Aligned_cols=78 Identities=24% Similarity=0.446 Sum_probs=62.9
Q ss_pred ceeeeEEEEEEeeCCC----CeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEE
Q 016195 178 DMSGIGINLREVPDAN----GVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEV 252 (393)
Q Consensus 178 ~~~glGi~~~~~~~~~----G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv 252 (393)
...|+||.+....+.. ....++|..|.++|||+++| |++||+|++|||+++..++..++..+++. .|+.+.|+|
T Consensus 15 ~~~glG~~i~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v 93 (98)
T 1ihj_A 15 GKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKE-ADFKIELEI 93 (98)
T ss_dssp TSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHH-SCSEEEEEE
T ss_pred CCCCcCEEEeccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc-CCCeEEEEE
Confidence 3457888886432110 11258899999999999999 99999999999999999888888888875 789999999
Q ss_pred EeCC
Q 016195 253 KHGN 256 (393)
Q Consensus 253 ~r~~ 256 (393)
.|++
T Consensus 94 ~R~g 97 (98)
T 1ihj_A 94 QTFD 97 (98)
T ss_dssp EEC-
T ss_pred EeCC
Confidence 9975
No 57
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}
Probab=99.04 E-value=1.3e-09 Score=87.28 Aligned_cols=76 Identities=24% Similarity=0.434 Sum_probs=62.8
Q ss_pred eeeeEEEEEEeeCCC-CeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 179 MSGIGINLREVPDAN-GVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 179 ~~glGi~~~~~~~~~-G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
..|+|+.+....+.. + .++|..|.++|||+++| |++||+|++|||+++.+++..++...++.. ++.+.|++.|++
T Consensus 14 ~~~lG~~l~~~~~~~~~--gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~~ 90 (98)
T 2opg_A 14 RTGLGLSIVGGSDTLLG--AIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQT-PQRVRLTLYRDE 90 (98)
T ss_dssp TTBTCEEEEECTTSTTC--SEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEEECS
T ss_pred CCcccEEEecCCCCCCC--CEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEcCC
Confidence 467899887533211 2 38899999999999999 999999999999999998888888888754 489999999977
Q ss_pred C
Q 016195 257 C 257 (393)
Q Consensus 257 ~ 257 (393)
.
T Consensus 91 ~ 91 (98)
T 2opg_A 91 A 91 (98)
T ss_dssp S
T ss_pred C
Confidence 4
No 58
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=99.04 E-value=4e-10 Score=88.96 Aligned_cols=73 Identities=14% Similarity=0.182 Sum_probs=59.7
Q ss_pred eeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcC-CCCCeEEEEEEeCC
Q 016195 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQG-PSETFVTIEVKHGN 256 (393)
Q Consensus 179 ~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g-~~G~~V~Ltv~r~~ 256 (393)
..++|+.+.... . .++|..|.++|||+++||++||+|++|||+++...+..++..+++. ..|+.+.|+|.|++
T Consensus 16 ~~~lG~~~~~~~--~---g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g 89 (90)
T 2eaq_A 16 SLDFGFTIKWDI--P---GIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLVMDVRRYG 89 (90)
T ss_dssp SSCCSEEEEEET--T---EEEEEEECTTSHHHHTTCCTTCEEEEETTEECCTTCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred CCcccEEEEecC--C---CEEEEEECCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHHHhcCCCCEEEEEEEeCC
Confidence 346788776432 2 4889999999999999999999999999999966567888888765 36789999999865
No 59
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=99.04 E-value=5.6e-10 Score=88.94 Aligned_cols=74 Identities=26% Similarity=0.348 Sum_probs=60.0
Q ss_pred eeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 179 ~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
..|+|+.+....+.. .++|..|.++|||++|||++||+|++|||+++..++..++..+++. .+..+.+.+.|.+
T Consensus 15 ~~~~G~~l~~~~~~~---~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~~~~~~~~~~r~~ 88 (95)
T 3r68_A 15 SNGYGFYLRAGPEQK---GQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRK-GGDQTTLLVLDKE 88 (95)
T ss_dssp TTBCSCEEEEC--CC---SEEEECCCTTSHHHHHTCCTTEEEEEETTEECTTCCHHHHHHHHHT-TTTEEEEEEEECC
T ss_pred CCcccEEEEecCCCC---CEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEECCc
Confidence 357888886543222 3789999999999999999999999999999999988999999986 5666777776655
No 60
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=99.03 E-value=6e-10 Score=88.78 Aligned_cols=72 Identities=29% Similarity=0.484 Sum_probs=61.1
Q ss_pred eeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCCCC
Q 016195 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNCG 258 (393)
Q Consensus 179 ~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~~~ 258 (393)
..++|+.+.. +.+ ++|..|.++|||+++||++||+|++|||+++..+...++...++ .|++++|+|.|++.+
T Consensus 18 ~~~~G~~l~~---~~g---~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~--~g~~v~l~v~R~~~~ 89 (93)
T 2dls_A 18 QHGFGFTVSG---DRI---VLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLIK--SGAYVALTLLGSSSG 89 (93)
T ss_dssp SSSCCEEEEC---SSS---CEEEEECSSSTTTTTTCCSSCEEEEETTEECSSSCHHHHHHHHT--SSSEEEEEEECCCCC
T ss_pred CCceeEEEeC---CCC---EEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHhhc--CCCEEEEEEEECCCC
Confidence 3578888753 123 78999999999999999999999999999999988778888886 589999999997643
No 61
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}
Probab=99.03 E-value=6.1e-10 Score=88.77 Aligned_cols=77 Identities=17% Similarity=0.356 Sum_probs=63.5
Q ss_pred CceeeeEEEEEEeeC----CCCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEE
Q 016195 177 YDMSGIGINLREVPD----ANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIE 251 (393)
Q Consensus 177 ~~~~glGi~~~~~~~----~~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Lt 251 (393)
+...|+|+.+....+ ... .++|..|.++|||+++| |++||+|++|||+++..++..++..+++. .|.++.|+
T Consensus 12 ~~~~~lG~~i~~~~~~~~~~~~--~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~ 88 (97)
T 2iwn_A 12 KNVQGLGITIAGYIGDKKLEPS--GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRH-TGQTVLLT 88 (97)
T ss_dssp CBTTBSCEEEECCCCC----CC--CCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHT-CCSEEEEE
T ss_pred cCCCCCcEEEEccCCCCCCCCC--CEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEE
Confidence 445679998875411 011 47899999999999999 99999999999999999888888888876 78899999
Q ss_pred EEeCC
Q 016195 252 VKHGN 256 (393)
Q Consensus 252 v~r~~ 256 (393)
+.|++
T Consensus 89 v~r~g 93 (97)
T 2iwn_A 89 LMRRG 93 (97)
T ss_dssp EEEEE
T ss_pred EEeCC
Confidence 98865
No 62
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.02 E-value=2.1e-10 Score=93.15 Aligned_cols=77 Identities=25% Similarity=0.374 Sum_probs=63.9
Q ss_pred ceeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCC-CCeEEEEEEeC
Q 016195 178 DMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPS-ETFVTIEVKHG 255 (393)
Q Consensus 178 ~~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~-G~~V~Ltv~r~ 255 (393)
...|+||.+....+... .++|..|.++|||+++| |++||+|++|||+++.+++..++..+++... |+.|+|+|.|+
T Consensus 18 ~~~g~G~~i~~g~~~~~--~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 95 (103)
T 1uep_A 18 MESGFGFRILGGDEPGQ--PILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRK 95 (103)
T ss_dssp SSSSCCEEECCCCSTTS--CCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred CCCccCEEEeeecCCCC--CeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCcEEEEEEeC
Confidence 45789999864221112 47899999999999999 9999999999999999988899998887644 88999999987
Q ss_pred C
Q 016195 256 N 256 (393)
Q Consensus 256 ~ 256 (393)
+
T Consensus 96 ~ 96 (103)
T 1uep_A 96 V 96 (103)
T ss_dssp C
T ss_pred C
Confidence 6
No 63
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.02 E-value=2.9e-10 Score=92.08 Aligned_cols=76 Identities=26% Similarity=0.375 Sum_probs=63.3
Q ss_pred ceeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCCC
Q 016195 178 DMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (393)
Q Consensus 178 ~~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~~ 257 (393)
...|+|+.+...++..| ++|..|.++|||+++||++||+|++|||+++..+...++...++. .|+.+.|++.|.+.
T Consensus 15 ~~~g~G~~l~~~~~~~g---~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~r~~~ 90 (102)
T 2d90_A 15 GSNGYGFYLRAGPEQKG---QIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRK-GGDQTTLLVLDKEA 90 (102)
T ss_dssp CSSSSSCEEEECSSSSS---EEEECCCTTSTTTTTTCCTTCEEEEESSCBCTTSCHHHHHHHHHH-STTEEEEEECSTTC
T ss_pred CCCCccEEEEeecCCCC---EEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEECCC
Confidence 34578998875432233 889999999999999999999999999999999887888888875 58899999988663
No 64
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=99.02 E-value=1.2e-10 Score=98.94 Aligned_cols=79 Identities=22% Similarity=0.405 Sum_probs=65.7
Q ss_pred ceeeeEEEEEEeeCC-CCeeEEEEEEEcCCChhhhc-CCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeC
Q 016195 178 DMSGIGINLREVPDA-NGVVTLKVLGLILDGPAHSA-GVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (393)
Q Consensus 178 ~~~glGi~~~~~~~~-~G~~~l~V~~V~~gsPA~~A-GL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~ 255 (393)
...|+||.+....+. .+...++|..|.+++||+++ ||++||+|++|||+++.+++++++..+|++..++.|.|+|+|.
T Consensus 38 ~~~glG~~i~gg~~~~~~~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~ 117 (130)
T 1i16_A 38 MSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRK 117 (130)
T ss_dssp TSSSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCSSEEEEEEEEE
T ss_pred CCCccCEEEecCcCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEEEEeC
Confidence 357899998743210 01124889999999999999 8999999999999999999999999999988888899999886
Q ss_pred C
Q 016195 256 N 256 (393)
Q Consensus 256 ~ 256 (393)
+
T Consensus 118 ~ 118 (130)
T 1i16_A 118 S 118 (130)
T ss_dssp S
T ss_pred C
Confidence 5
No 65
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=99.02 E-value=1.8e-10 Score=97.15 Aligned_cols=86 Identities=21% Similarity=0.284 Sum_probs=71.0
Q ss_pred cCceeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCC-CCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEe
Q 016195 176 RYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGV-RQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH 254 (393)
Q Consensus 176 ~~~~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL-~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r 254 (393)
++.+.|+|+.+....+.. .++|..|.++|||+++|| ++||+|++|||+++..++..++..++++..|+.+.|++.|
T Consensus 16 ~~~~~glG~~~~~~~~~~---~~~V~~V~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R 92 (127)
T 1b8q_A 16 KRKVGGLGFLVKERVSKP---PVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILR 92 (127)
T ss_dssp CTTTSCCSCCEEECTTSS---CEEECCCSSSSSHHHHSSCCTTTCCCEETTEECSSSCHHHHHHHHHSCCSSCEEEEEEC
T ss_pred eCCCCcEeEEEEecCCCC---CEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEe
Confidence 455678999887543211 488999999999999998 9999999999999999888999999988888999999999
Q ss_pred CCCCceEEEEEE
Q 016195 255 GNCGPIESIQVQ 266 (393)
Q Consensus 255 ~~~~~~~~v~l~ 266 (393)
++. ..+++++
T Consensus 93 ~g~--~~~~~~~ 102 (127)
T 1b8q_A 93 GPE--GFTTHLE 102 (127)
T ss_dssp CCC--SEEECCC
T ss_pred CCc--eEEEEEE
Confidence 874 3444443
No 66
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.01 E-value=1.3e-09 Score=87.95 Aligned_cols=74 Identities=18% Similarity=0.251 Sum_probs=61.5
Q ss_pred eeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCCC
Q 016195 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (393)
Q Consensus 180 ~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~~ 257 (393)
..+|+.+....+... .++|..|.++|||+++||++||+|++|||+++..+...++...++. |..+.|+|.|++.
T Consensus 22 ~~lG~~~~~~~~~~~--gv~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~--~~~v~l~v~R~g~ 95 (100)
T 2eeh_A 22 GRLGFSVRGGSEHGL--GIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTTMGSAVKVLTS--SSRLHMMVRRMGS 95 (100)
T ss_dssp SSCSEEEECCTTTTC--CEEEEEECTTSHHHHHTCCSSCEEEEETTEECSSCCHHHHHHHHHS--CSSEEEEEEECSC
T ss_pred CCccEEEEccccCCC--CEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHhhcC--CCEEEEEEEECCc
Confidence 458888865321111 4889999999999999999999999999999999888888888874 7899999999874
No 67
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1
Probab=99.01 E-value=8.2e-10 Score=87.56 Aligned_cols=71 Identities=23% Similarity=0.261 Sum_probs=60.1
Q ss_pred eeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 179 ~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
..|+|+.+... .+ ++|..|.++|||+++||++||+|++|||+++..++..++..+++. .+..+.|++.|.+
T Consensus 13 ~~g~G~~l~~~---~~---~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~~ 83 (91)
T 2f5y_A 13 KDGFGFTICCD---SP---VRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRS-CPSEIILLVWRMV 83 (91)
T ss_dssp TTBTSEEEECS---SS---CEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHT-CSSEEEEEEEECC
T ss_pred CCCccEEEecC---CC---EEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCC
Confidence 35688877532 23 789999999999999999999999999999999888888888875 4568999999976
No 68
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=99.01 E-value=3.7e-10 Score=91.49 Aligned_cols=77 Identities=26% Similarity=0.381 Sum_probs=61.6
Q ss_pred eeeEEEEEEeeCCCCeeEEEEEEEcCCChhhh-cCCCCCCEEEEECCEEcCCCCHHHHHHHhcCC-CCCeEEEEEEeCC
Q 016195 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHS-AGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGP-SETFVTIEVKHGN 256 (393)
Q Consensus 180 ~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~-AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~-~G~~V~Ltv~r~~ 256 (393)
.++|+.+.....+.....++|..|.++|||++ +||++||+|++|||+++.+.+.+++.++|++. .|+.|+|+|.|..
T Consensus 21 ~~lG~~i~~~~~~~~~~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~ 99 (101)
T 2yt7_A 21 EGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIVHCP 99 (101)
T ss_dssp CCCCEEEEECCCSSSSCCEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHHHTTTSSEEEEEECCCC
T ss_pred CccCEEEEeCCCCCCccCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCC
Confidence 58999986422111111378999999999999 56999999999999999888889999999864 7889999998753
No 69
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=99.01 E-value=1.1e-09 Score=87.14 Aligned_cols=73 Identities=25% Similarity=0.464 Sum_probs=61.1
Q ss_pred eeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 180 ~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
.++|+.+..... ++ .++|..|.++|||+++| |++||+|++|||+++.+.++.++..++++..+ .++|++.+..
T Consensus 15 ~~lG~~i~~~~~-~~--~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~-~v~l~v~~~~ 88 (93)
T 3o46_A 15 EPLGATIKKDEQ-TG--AIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQG-AITFKIIPGS 88 (93)
T ss_dssp SCCCEEEEECTT-TC--CEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCCE-EEEEEEECC-
T ss_pred CCccEEEEecCC-CC--CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC-eEEEEEEeCC
Confidence 489998875311 12 48999999999999999 99999999999999998889999999986654 8999998754
No 70
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=99.01 E-value=1.4e-09 Score=86.46 Aligned_cols=76 Identities=22% Similarity=0.366 Sum_probs=60.4
Q ss_pred eeeEEEEEEeeCC---CCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeC
Q 016195 180 SGIGINLREVPDA---NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (393)
Q Consensus 180 ~glGi~~~~~~~~---~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~ 255 (393)
.|+||.+....+. .+...++|..|.++|||+++| |++||+|++|||+++..++..++..+++.. +..+.|++.|+
T Consensus 14 ~g~G~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~ 92 (94)
T 2fe5_A 14 KGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNT-SDMVYLKVAKP 92 (94)
T ss_dssp TCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTC-CSEEEEEEECC
T ss_pred CCCCEEEEcccCCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEcC
Confidence 5788888642110 011148999999999999999 999999999999999998888888888754 45899999886
Q ss_pred C
Q 016195 256 N 256 (393)
Q Consensus 256 ~ 256 (393)
+
T Consensus 93 g 93 (94)
T 2fe5_A 93 G 93 (94)
T ss_dssp C
T ss_pred C
Confidence 5
No 71
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.00 E-value=1.1e-09 Score=91.87 Aligned_cols=77 Identities=27% Similarity=0.409 Sum_probs=64.2
Q ss_pred ceeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCC-CCeEEEEEEeC
Q 016195 178 DMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPS-ETFVTIEVKHG 255 (393)
Q Consensus 178 ~~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~-G~~V~Ltv~r~ 255 (393)
...|+||.+....+.+. .++|..|.++|||+++| |++||+|++|||+++.+++..++..+|+... |+.+.|+|.|+
T Consensus 28 ~~~glG~~~~~g~~~~~--gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 105 (123)
T 1ueq_A 28 SNMGFGFTIIGGDEPDE--FLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRG 105 (123)
T ss_dssp CTTSCSEEEECCSSSSC--CCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEES
T ss_pred CCCceeEEEecccCCCC--CEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeC
Confidence 34689998864221112 37899999999999999 9999999999999999888899999998754 89999999997
Q ss_pred C
Q 016195 256 N 256 (393)
Q Consensus 256 ~ 256 (393)
+
T Consensus 106 ~ 106 (123)
T 1ueq_A 106 Y 106 (123)
T ss_dssp C
T ss_pred C
Confidence 6
No 72
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=99.00 E-value=3.1e-10 Score=92.43 Aligned_cols=58 Identities=33% Similarity=0.398 Sum_probs=53.5
Q ss_pred EEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 198 LKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 198 l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
++|..|.++|||+++||++||+|++|||+++..+...++...++ ..|+.++|++.|++
T Consensus 28 ~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~-~~g~~v~l~v~r~~ 85 (106)
T 3ngh_A 28 HLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVR-KSGNSVTLLVLDGD 85 (106)
T ss_dssp CEEECCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHH-HTTTEEEEEEECHH
T ss_pred EEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH-hCCCEEEEEEEECC
Confidence 68999999999999999999999999999999998888888887 57889999999876
No 73
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}
Probab=99.00 E-value=8.4e-10 Score=91.05 Aligned_cols=71 Identities=27% Similarity=0.263 Sum_probs=60.5
Q ss_pred eeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 180 ~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
.++|+.+... . .++|..|.++|||++|||++||+|++|||+++..++..++.+++++..++.++|+|.|..
T Consensus 34 ~~~G~~l~~~---~---~v~V~~V~~gspA~~AGL~~GD~Il~VnG~~v~~~~~~dv~~~i~~~~~~~v~l~V~~~~ 104 (109)
T 2vsv_A 34 GDLGFTLRGN---A---PVQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKVVSLL 104 (109)
T ss_dssp GCCCEEEESS---S---SCEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTSCEEEEEESCC
T ss_pred CceeEEEeCC---C---CeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEECC
Confidence 5678877421 2 368999999999999999999999999999999888899999998777777999998865
No 74
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A
Probab=99.00 E-value=7.4e-10 Score=86.36 Aligned_cols=74 Identities=19% Similarity=0.303 Sum_probs=59.5
Q ss_pred eeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 180 ~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
.++||.+....+... .++|..|.++|||+++||++||+|++|||+++..++..++...++. .+..+.|++.|++
T Consensus 11 ~~~G~~l~gg~~~~~--~v~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~~ 84 (85)
T 1rgw_A 11 GPWGFRLQGGKDFNM--PLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKS-ASYNLSLTLQKSK 84 (85)
T ss_dssp SCCCEEECCCGGGTS--CCBEEEECTTSHHHHSSCCCCSBEEEETTEECTTCCHHHHHHHHTT-CSSCEEEEEESCC
T ss_pred CccCEEEEeccCCCC--CeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHc-CCCeEEEEEEeCC
Confidence 468888753221111 3789999999999999999999999999999999988888888874 4567999998865
No 75
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.99 E-value=1e-09 Score=89.97 Aligned_cols=77 Identities=22% Similarity=0.381 Sum_probs=63.9
Q ss_pred eeeEEEEEEeeC--CCCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 180 SGIGINLREVPD--ANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 180 ~glGi~~~~~~~--~~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
.|+||.+....+ ..+...++|..|.++|||+++| |++||+|++|||+++..++++++..+++...+..|+|+|.|+.
T Consensus 26 ~glG~~i~~~~~~~~~~~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~R~~ 105 (108)
T 2d92_A 26 KGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICSGP 105 (108)
T ss_dssp SCCSEEEEEEECSSCTTCEEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHHSCSEEEEEEEECCC
T ss_pred CccCEEEecccccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEcCC
Confidence 589998865321 0112358999999999999999 9999999999999999988999999998766778999999864
No 76
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=98.99 E-value=8.5e-10 Score=87.05 Aligned_cols=75 Identities=27% Similarity=0.455 Sum_probs=60.4
Q ss_pred eeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCC-CCeEEEEEEeCC
Q 016195 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPS-ETFVTIEVKHGN 256 (393)
Q Consensus 180 ~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~-G~~V~Ltv~r~~ 256 (393)
.|+|+.+....+... .++|..|.++|||+++| |++||+|++|||+++.+.+..++...++... +..++|+|.|..
T Consensus 13 ~g~G~~~~~g~~~~~--~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~v~l~v~R~~ 89 (90)
T 2q9v_A 13 TGFGFRILGGNEPGE--PIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTVRQTR 89 (90)
T ss_dssp TBCCEEEEECSSTTS--CEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEECC
T ss_pred CccCEEEEccccCCC--CEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEecc
Confidence 578998864322111 38899999999999999 9999999999999998888888888887543 458999998853
No 77
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.99 E-value=9.5e-10 Score=89.44 Aligned_cols=75 Identities=27% Similarity=0.382 Sum_probs=62.3
Q ss_pred ceeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 178 DMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 178 ~~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
...++||.+....+... .++|..|.++|||+++||++||+|++|||+++...+..++..+++. ++.+.|+|+|..
T Consensus 25 ~~~~lG~~~~~~~~~~~--g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~--~~~v~l~v~r~~ 99 (104)
T 1wi2_A 25 PGAQLGFNIRGGKASQL--GIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKT--AREISMRVRFFS 99 (104)
T ss_dssp TTCCCSEEEECCSSSCC--CCEEEEECTTSHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHHH--SSSEEEEEECCC
T ss_pred CCCCccEEEEcccCCCC--CEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhC--CCEEEEEEEECC
Confidence 34678888865322111 3789999999999999999999999999999999888999998875 788999999865
No 78
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.99 E-value=5e-10 Score=89.33 Aligned_cols=75 Identities=19% Similarity=0.267 Sum_probs=62.2
Q ss_pred eeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCCC
Q 016195 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (393)
Q Consensus 180 ~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~~ 257 (393)
.++|+.+....+. ...++|..|.++|||+++||++||+|++|||+++..++..++...++... +.+.|++.|++.
T Consensus 16 ~~lG~~l~~g~~~--~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~g~ 90 (94)
T 1vb7_A 16 APWGFRISGGRDF--HTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSA-SPLRLQLDRSSG 90 (94)
T ss_dssp SCCSBCCEEETTT--TEEEECCCBCTTSSHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCC-SSEEEEEECCCC
T ss_pred CCccEEEecccCC--CCCeEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CcEEEEEEECCc
Confidence 5678887643221 12578999999999999999999999999999999988889998888655 889999999874
No 79
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A
Probab=98.99 E-value=2.2e-09 Score=86.58 Aligned_cols=77 Identities=26% Similarity=0.402 Sum_probs=62.6
Q ss_pred eeeEEEEEEeeCCC---CeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeC
Q 016195 180 SGIGINLREVPDAN---GVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (393)
Q Consensus 180 ~glGi~~~~~~~~~---G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~ 255 (393)
.|+||.+....+.. +...++|..|.++|||+++| |++||+|++|||+++..++..++..+++. .|+.+.|+|.|+
T Consensus 18 ~~lG~~l~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~ 96 (101)
T 2jik_A 18 SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRN-AGYAVSLRVQHR 96 (101)
T ss_dssp TCCCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHT-CCSEEEEEEEEE
T ss_pred CCCCEEEeccccCCCccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEeC
Confidence 78999987532110 01148899999999999999 99999999999999999988888888875 478899999887
Q ss_pred CC
Q 016195 256 NC 257 (393)
Q Consensus 256 ~~ 257 (393)
+.
T Consensus 97 ~~ 98 (101)
T 2jik_A 97 LE 98 (101)
T ss_dssp SC
T ss_pred CC
Confidence 63
No 80
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}
Probab=98.98 E-value=7.9e-10 Score=93.09 Aligned_cols=77 Identities=26% Similarity=0.336 Sum_probs=65.7
Q ss_pred ceeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCCC
Q 016195 178 DMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (393)
Q Consensus 178 ~~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~~ 257 (393)
...|+|+.+....+.. .++|..|.++|||+++||++||+|++|||+++..++..++..+++...++.+.|++.|++.
T Consensus 18 ~~~g~G~~l~~~~~~~---gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~g~ 94 (128)
T 2kjd_A 18 GPSGYGFNLHSDKSKP---GQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETD 94 (128)
T ss_dssp CSSSCCEEEEECSSSC---SEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEEEEEECHHHH
T ss_pred CCCcccEEEEecCCCC---CEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEEEEEEeCCc
Confidence 4468999887543222 3899999999999999999999999999999999888999999988788888999998763
No 81
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Probab=98.98 E-value=1.8e-09 Score=87.33 Aligned_cols=73 Identities=32% Similarity=0.517 Sum_probs=60.9
Q ss_pred eeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 180 ~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
.|+|+.+....+..| ++|..|.++|||+++| |++||+|++|||+++..++..++...++. .+..+.|++.|.+
T Consensus 22 ~glG~~~~~~~~~~g---v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r~~ 95 (104)
T 3i4w_A 22 TGLGFNIVGGEXGEG---IFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN-AGQTVTIIAQYKP 95 (104)
T ss_dssp TBTSEEEEECC-CCC---EEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHHHT-SCSEEEEEEEECH
T ss_pred CccCEEEECCCCCCC---EEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECc
Confidence 578888865432223 8899999999999999 99999999999999999888888877775 6788999998864
No 82
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Probab=98.98 E-value=2.1e-09 Score=87.40 Aligned_cols=77 Identities=27% Similarity=0.426 Sum_probs=62.5
Q ss_pred eeeEEEEEEeeCC---CCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeC
Q 016195 180 SGIGINLREVPDA---NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (393)
Q Consensus 180 ~glGi~~~~~~~~---~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~ 255 (393)
.|+||.+....+. .+...++|..|.++|||+++| |++||+|++|||+++.+.+..++...++.. |..+.|+|.|+
T Consensus 14 ~glG~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~ 92 (105)
T 2awx_A 14 KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNT-SDFVYLKVAKP 92 (105)
T ss_dssp TBSSEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHSC-CSEEEEEEECC
T ss_pred CCCCEEEeCccCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEcC
Confidence 5789988743210 011148999999999999999 999999999999999988888888888754 78999999998
Q ss_pred CC
Q 016195 256 NC 257 (393)
Q Consensus 256 ~~ 257 (393)
+.
T Consensus 93 ~~ 94 (105)
T 2awx_A 93 TS 94 (105)
T ss_dssp CC
T ss_pred CC
Confidence 73
No 83
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.98 E-value=2.5e-09 Score=88.88 Aligned_cols=76 Identities=24% Similarity=0.361 Sum_probs=63.5
Q ss_pred eeeEEEEEEeeCC---CCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeC
Q 016195 180 SGIGINLREVPDA---NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (393)
Q Consensus 180 ~glGi~~~~~~~~---~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~ 255 (393)
.++||.+....+. .+...++|..|.++|||+++| |++||+|++|||+++..+++.++..+++. .+..++|+|.|+
T Consensus 30 ~glG~~i~g~~~~~~~~~~~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~ 108 (117)
T 1ujd_A 30 NGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQ-QSGEAEICVRLD 108 (117)
T ss_dssp CSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSC-CSSCEEEEEESS
T ss_pred CcccEEEeCCCCCCcccCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhc-CCCEEEEEEEEC
Confidence 6788888643211 122358999999999999999 99999999999999999988999999986 678899999997
Q ss_pred C
Q 016195 256 N 256 (393)
Q Consensus 256 ~ 256 (393)
+
T Consensus 109 ~ 109 (117)
T 1ujd_A 109 L 109 (117)
T ss_dssp C
T ss_pred C
Confidence 6
No 84
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=98.98 E-value=1.9e-09 Score=86.25 Aligned_cols=77 Identities=22% Similarity=0.374 Sum_probs=60.3
Q ss_pred ceeeeEEEEEEee-----CCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEE
Q 016195 178 DMSGIGINLREVP-----DANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEV 252 (393)
Q Consensus 178 ~~~glGi~~~~~~-----~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv 252 (393)
...++||.+.... ..+....++|..|.++|||+++||++||+|++|||+++..++.+++..+++.. +..++|+|
T Consensus 14 ~~~~~Gf~l~~~g~~~~~~~~~~~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v 92 (96)
T 2ego_A 14 DNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKAS-GNVLRLET 92 (96)
T ss_dssp TTCCCSEEEEEEEC-------CCEEEEEEEECTTCHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHT-TTEEEEEE
T ss_pred CCCCccEEEEeccccccCCCCCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEE
Confidence 3457888876411 11111257899999999999999999999999999999998888999888765 55899988
Q ss_pred EeC
Q 016195 253 KHG 255 (393)
Q Consensus 253 ~r~ 255 (393)
.++
T Consensus 93 ~~~ 95 (96)
T 2ego_A 93 LYG 95 (96)
T ss_dssp ECC
T ss_pred EEC
Confidence 764
No 85
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A
Probab=98.98 E-value=1.9e-09 Score=86.02 Aligned_cols=76 Identities=28% Similarity=0.441 Sum_probs=61.6
Q ss_pred eeeEEEEEEeeCC-CCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 180 SGIGINLREVPDA-NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 180 ~glGi~~~~~~~~-~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
.++|+.+....+. .+...++|..|.++|||+++| |++||+|++|||+++.+++..++..+++. .|+.+.|++.|++
T Consensus 16 ~~lG~~i~~g~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~~ 93 (96)
T 1d5g_A 16 NSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRN-TGQVVHLLLEKGQ 93 (96)
T ss_dssp SSCCEEEECCSSSCSSSSCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHS-CCSEEEEEEECCS
T ss_pred CCCCEEEECCCCCCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEcCC
Confidence 5788888632110 000137899999999999999 99999999999999999888898888876 6889999999876
No 86
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Probab=98.98 E-value=1.6e-09 Score=87.57 Aligned_cols=78 Identities=24% Similarity=0.255 Sum_probs=62.9
Q ss_pred eeeeEEEEEEeeCC---CCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEe
Q 016195 179 MSGIGINLREVPDA---NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH 254 (393)
Q Consensus 179 ~~glGi~~~~~~~~---~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r 254 (393)
..|+||.+....+. .+...++|..|.++|||+++| |++||+|++|||+++...+..++...++. .|..+.|++.|
T Consensus 14 ~~glG~~i~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R 92 (102)
T 2i1n_A 14 NSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKE-AGPVVRLVVRR 92 (102)
T ss_dssp TTBTSEEEEECTTSCSSTTCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHH-SCSEEEEEEEE
T ss_pred CCcCCEEEEcccCCCCcCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEe
Confidence 35789988642110 001148999999999999999 99999999999999999888888888875 68899999999
Q ss_pred CCC
Q 016195 255 GNC 257 (393)
Q Consensus 255 ~~~ 257 (393)
++.
T Consensus 93 ~~~ 95 (102)
T 2i1n_A 93 RQP 95 (102)
T ss_dssp ECC
T ss_pred CCC
Confidence 763
No 87
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.98 E-value=5.8e-10 Score=88.97 Aligned_cols=74 Identities=23% Similarity=0.289 Sum_probs=60.4
Q ss_pred eeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 180 ~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
.++||.+....+... .++|..|.++|||+++||++||+|++|||+++..+...++..+++. .|+.+.|+|.|++
T Consensus 18 ~~~G~~l~gg~~~~~--~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~g 91 (94)
T 2eeg_A 18 SPWGFRLVGGRDFSA--PLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKG-CHDHLTLSVSSGP 91 (94)
T ss_dssp SCCSCCEECCTTTTS--CCEECCCCSSSHHHHTTCCTTCEEEEETTEETTTCCHHHHHHHHHT-CCSCEEEEEECCS
T ss_pred CccCEEEECccCCCC--CEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCC
Confidence 467888753211111 3789999999999999999999999999999999887888888875 6788999999876
No 88
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A
Probab=98.98 E-value=1.5e-09 Score=91.97 Aligned_cols=75 Identities=28% Similarity=0.441 Sum_probs=63.2
Q ss_pred eeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCC-CCeEEEEEEeCC
Q 016195 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPS-ETFVTIEVKHGN 256 (393)
Q Consensus 180 ~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~-G~~V~Ltv~r~~ 256 (393)
.|+|+.+....+. ...++|..|.++|||+++| |++||+|++|||+++.++++.++..+++... |+.|+|+|.|+.
T Consensus 29 ~g~G~~i~g~~~~--~~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~ 105 (129)
T 2kpk_A 29 RGFGFTVVGGDEP--DEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRGY 105 (129)
T ss_dssp SCCSEEEEEEEET--TEEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTEEEEEEEEECS
T ss_pred CcccEEEeCccCC--CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCC
Confidence 4788888653221 1248999999999999999 9999999999999999988899999987654 889999999976
No 89
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.98 E-value=1.1e-09 Score=89.16 Aligned_cols=78 Identities=27% Similarity=0.398 Sum_probs=63.0
Q ss_pred eeeeEEEEEEeeCC----CCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEE
Q 016195 179 MSGIGINLREVPDA----NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVK 253 (393)
Q Consensus 179 ~~glGi~~~~~~~~----~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~ 253 (393)
..|+||.+....+. .+...++|..|.++|||+++| |++||+|++|||+++..++..++..+++.. +..+.|+|.
T Consensus 17 ~~glG~~l~~g~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~-g~~v~l~v~ 95 (105)
T 1wha_A 17 ERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAA-SPTIALLLE 95 (105)
T ss_dssp TTCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSC-CSCEEEEEE
T ss_pred CCccCEEEEeccCCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEE
Confidence 35688888642210 011148899999999999999 999999999999999998888999999754 888999999
Q ss_pred eCCC
Q 016195 254 HGNC 257 (393)
Q Consensus 254 r~~~ 257 (393)
|++.
T Consensus 96 R~~~ 99 (105)
T 1wha_A 96 REAG 99 (105)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 9764
No 90
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=98.97 E-value=2.1e-09 Score=84.78 Aligned_cols=73 Identities=23% Similarity=0.351 Sum_probs=60.0
Q ss_pred eeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhc-CCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEe
Q 016195 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSA-GVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH 254 (393)
Q Consensus 179 ~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~A-GL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r 254 (393)
..++||.+....+.. ..++|..|.++|||+++ ||++||+|++|||+++.+++..++..+++. .+..++|++.|
T Consensus 15 ~~~lG~~i~~~~~~~--~g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~~-~~~~v~l~v~r 88 (90)
T 1qav_A 15 AGGLGISIKGGRENK--MPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKK-TGKEVVLEVKY 88 (90)
T ss_dssp TTCCCEEEEEEGGGT--EEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHT-CCSEEEEEEEE
T ss_pred CCCcCEEEEcccCCC--CCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEE
Confidence 457888886432111 25889999999999999 899999999999999999888888888875 47789998877
No 91
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=98.97 E-value=6.9e-10 Score=92.08 Aligned_cols=103 Identities=20% Similarity=0.286 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhcCCCceeecCHHHHhhhccCceeeeEEEEEEeeCC-CCeeEEEEEEEcCCChhhhcC-CCCCCEEEE
Q 016195 145 SKAHGIIKRMLASLGDPYTRFLSPAEFSKMARYDMSGIGINLREVPDA-NGVVTLKVLGLILDGPAHSAG-VRQGDEVLA 222 (393)
Q Consensus 145 ~~~~~~i~~ml~~L~D~ht~~~~~~e~~~~~~~~~~glGi~~~~~~~~-~G~~~l~V~~V~~gsPA~~AG-L~~GD~Ils 222 (393)
.++...+..|.... ++++-.+. +....++|+.+....+. .+...++|..|.++|||+++| |++||+|++
T Consensus 6 ~~~~~~~~~~~~~~-~~~~v~l~--------k~~~~~lG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~Il~ 76 (117)
T 2o2t_A 6 DEFDQLIKNMAQGR-HVEVFELL--------KPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILA 76 (117)
T ss_dssp HHHHHHHHHHHTTS-CEEEEEEE--------CCSSSCSSCCEEEEECCC--CEEEEECCCCTTSHHHHHCCCCTTCEEEE
T ss_pred HHHHHHHHhhccCC-eEEEEEEE--------ECCCCCCCEEEeecccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEE
Confidence 45666666665432 44444432 22235677776543211 111258899999999999999 999999999
Q ss_pred ECCEEcC-CCCHHHHHHHhcCCCCCeEEEEEEeCCC
Q 016195 223 VNGVDVR-GKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (393)
Q Consensus 223 VnG~~v~-~~~~~~v~~~L~g~~G~~V~Ltv~r~~~ 257 (393)
|||+++. +.+..++..+++. .|..+.|+|.|++.
T Consensus 77 ing~~v~~~~~~~~~~~~l~~-~~~~v~l~v~R~~~ 111 (117)
T 2o2t_A 77 INGQALDQTITHQQAISILQK-AKDTVQLVIARGSL 111 (117)
T ss_dssp ETTEECCTTSCHHHHHHHHHH-CCSEEEEEEESSCC
T ss_pred ECCEECCCCCCHHHHHHHHHc-CCCEEEEEEEeCCc
Confidence 9999998 7888898888875 68899999999874
No 92
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.96 E-value=5.8e-10 Score=94.42 Aligned_cols=75 Identities=28% Similarity=0.380 Sum_probs=64.2
Q ss_pred cCceeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcC-CCCCeEEEEEE
Q 016195 176 RYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQG-PSETFVTIEVK 253 (393)
Q Consensus 176 ~~~~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g-~~G~~V~Ltv~ 253 (393)
.+.+.|+||.+... .. .++|..|.++|||++|| |++||+|++|||+++.+.++.++..+|+. +.|+.|+|+|.
T Consensus 34 ~k~~~glG~~i~~~---~~--~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~~~G~~v~l~V~ 108 (126)
T 1wif_A 34 TVGNLGLGLVVIQN---GP--YLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAY 108 (126)
T ss_dssp ECCTTCCCCCEEEE---TT--EEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEEEEE
T ss_pred ecCCceEeEEEEcC---CC--cEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEEEEE
Confidence 34567889877642 12 47899999999999999 99999999999999988788999999987 57999999999
Q ss_pred eC
Q 016195 254 HG 255 (393)
Q Consensus 254 r~ 255 (393)
|+
T Consensus 109 R~ 110 (126)
T 1wif_A 109 RG 110 (126)
T ss_dssp SS
T ss_pred EC
Confidence 86
No 93
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Probab=98.96 E-value=2.2e-09 Score=91.20 Aligned_cols=78 Identities=23% Similarity=0.282 Sum_probs=63.7
Q ss_pred eeeeEEEEEEe-eCCCCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCC-CCCeEEEEEEeC
Q 016195 179 MSGIGINLREV-PDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGP-SETFVTIEVKHG 255 (393)
Q Consensus 179 ~~glGi~~~~~-~~~~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~-~G~~V~Ltv~r~ 255 (393)
..++||.+... ....+...++|..|.++|||+++| |++||+|++|||+++.+.+++++..+++.. .|..|+|+|.|+
T Consensus 47 ~~~lG~~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 126 (131)
T 1wfg_A 47 GAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRS 126 (131)
T ss_dssp CTTTTEEEEEEEECSSSCEEEEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTCCHHHHHHHHHHTSSSSEEEEEEEEE
T ss_pred CCCCCEEEecCccCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEcC
Confidence 45678887531 111223358999999999999999 999999999999999998889999988765 678999999987
Q ss_pred C
Q 016195 256 N 256 (393)
Q Consensus 256 ~ 256 (393)
+
T Consensus 127 g 127 (131)
T 1wfg_A 127 G 127 (131)
T ss_dssp C
T ss_pred C
Confidence 6
No 94
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.96 E-value=1.5e-09 Score=91.28 Aligned_cols=80 Identities=16% Similarity=0.306 Sum_probs=65.0
Q ss_pred cCceeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEe
Q 016195 176 RYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH 254 (393)
Q Consensus 176 ~~~~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r 254 (393)
.+.+.++|+.+....+......++|..|.++|||+++| |++||+|++|||+++.. ..++..+|+...|+.+.|+|.|
T Consensus 28 ~~~~~~lG~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~--~~~~~~~l~~~~g~~v~l~v~R 105 (124)
T 1wh1_A 28 MNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQN--REEAVALLTSEENKNFSLLIAR 105 (124)
T ss_dssp SSTTCCCCEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCS--HHHHHHHHTCSSCCSCCEEEEE
T ss_pred cCCCCcccEEEEecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCEEEEEEEE
Confidence 34567899998764321000138999999999999999 99999999999999986 6788899988778999999999
Q ss_pred CCC
Q 016195 255 GNC 257 (393)
Q Consensus 255 ~~~ 257 (393)
++.
T Consensus 106 ~g~ 108 (124)
T 1wh1_A 106 PEL 108 (124)
T ss_dssp CSS
T ss_pred CCE
Confidence 873
No 95
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.95 E-value=4.8e-10 Score=91.00 Aligned_cols=75 Identities=23% Similarity=0.388 Sum_probs=60.9
Q ss_pred eeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCCC
Q 016195 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (393)
Q Consensus 180 ~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~~ 257 (393)
.++||.+....+. . ..++|..|.++|||++|||++||+|++|||+++..+...++...++. .++.+.|+|.|++.
T Consensus 15 ~~~G~~l~gg~~~-~-~~v~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~g~ 89 (103)
T 1wf7_A 15 APWGFRLQGGKDF-N-MPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKA-CTGSLNMTLQRASA 89 (103)
T ss_dssp SCCSCCEEEETTT-T-EEEEECCCCTTCHHHHTTCCTTCBEEEETTEECSSCCHHHHHHHHHH-CSSEEEEEECCCSC
T ss_pred CccCEEEeccccC-C-CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCC
Confidence 5678887643221 1 24789999999999999999999999999999999887887777764 37899999999874
No 96
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.95 E-value=1.6e-09 Score=90.19 Aligned_cols=76 Identities=21% Similarity=0.311 Sum_probs=63.7
Q ss_pred eeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCCC
Q 016195 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (393)
Q Consensus 180 ~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~~ 257 (393)
.++|+.+....+... ..++|..|.++|||+++| |++||+|++|||+++.+.+.+++..+|+ ..|+.++|+|.|.+.
T Consensus 27 ~~lG~~i~~~~~~~~-~~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~-~~g~~v~l~v~r~~~ 103 (117)
T 1v62_A 27 SALGISLTTTSLRNK-SVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLA-SISEKVRLEILPVPQ 103 (117)
T ss_dssp CCCCCEEEEECCSSS-CEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHH-SCSSEEEEEECCBTT
T ss_pred CcccEEEEccCCCCC-CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH-hCCCeEEEEEEECCC
Confidence 578888865422111 148999999999999999 9999999999999999888999999998 578999999999763
No 97
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=98.94 E-value=2.9e-09 Score=85.45 Aligned_cols=67 Identities=19% Similarity=0.155 Sum_probs=54.7
Q ss_pred EEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCC-CCeEEEEEEeCCCCceEEEEEE
Q 016195 198 LKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPS-ETFVTIEVKHGNCGPIESIQVQ 266 (393)
Q Consensus 198 l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~-G~~V~Ltv~r~~~~~~~~v~l~ 266 (393)
.+|..|.++|||++|||++||+|++|||+++..+ .++...+.... ++.+.++|.|++.+..++++++
T Consensus 4 p~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~--~d~~~~l~~~~~~~~v~l~v~R~g~~~~~~~~l~ 71 (95)
T 3id1_A 4 PVVGEIAANSIAAEAQIAPGTELKAVDGIETPDW--DAVRLQLVDKIGDESTTITVAPFGSDQRRDVKLD 71 (95)
T ss_dssp CBEEEECTTSHHHHTTCCTTCEEEEETTEECSSH--HHHHHHHHHTTTCSEEEEEEECTTCCCCEEEEEE
T ss_pred CEEEeeCCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHHhcCCCcEEEEEEECCCCceEEEEEE
Confidence 4688999999999999999999999999999884 67777665443 4799999999885555555554
No 98
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}
Probab=98.94 E-value=6.1e-10 Score=90.51 Aligned_cols=90 Identities=21% Similarity=0.347 Sum_probs=64.9
Q ss_pred CCceeecCHHHHhhhccCceeeeEEEEEEeeC-----CCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHH
Q 016195 160 DPYTRFLSPAEFSKMARYDMSGIGINLREVPD-----ANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAF 234 (393)
Q Consensus 160 D~ht~~~~~~e~~~~~~~~~~glGi~~~~~~~-----~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~ 234 (393)
|||+.|.+.... +.+....++||.+..... ......++|..|.++|||+++||++||+|++|||+++.+++.+
T Consensus 9 ~p~s~~~~~~v~--l~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~ 86 (104)
T 2z17_A 9 SDFSWSQRKLVT--VEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAGLQAGDVLANINGVSTEGFTYK 86 (104)
T ss_dssp --CCCSCCCEEE--EECCTTSCCSEEEEECCCCCCSSSCCSCCEEEEEECTTSHHHHHTCCTTCBCCEETTEECTTCCHH
T ss_pred ccCCCCcceEEE--EEeCCCCCccEEEEeeecccCCcccCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEEcCCCCHH
Confidence 888888765432 223333567888865210 0011248899999999999999999999999999999988889
Q ss_pred HHHHHhcCCCCCeEEEEE
Q 016195 235 EVSSLLQGPSETFVTIEV 252 (393)
Q Consensus 235 ~v~~~L~g~~G~~V~Ltv 252 (393)
++..+++...+ +++|+|
T Consensus 87 ~~~~~l~~~~~-~v~l~v 103 (104)
T 2z17_A 87 QVVDLIRSSGN-LLTIET 103 (104)
T ss_dssp HHHHHHHHTTT-EEEEEC
T ss_pred HHHHHHHhCCC-cEEEEE
Confidence 99999986644 777764
No 99
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.94 E-value=1.5e-09 Score=87.65 Aligned_cols=77 Identities=19% Similarity=0.239 Sum_probs=61.6
Q ss_pred CceeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 177 YDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 177 ~~~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
+...++||.+....+... .++|..|.++|||+++||++||+|++|||+++..+...++...++ .+..+.|+|.|++
T Consensus 18 ~~~~~lG~~~~~~~~~~~--g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~--~~~~v~l~v~R~g 93 (101)
T 1uez_A 18 KAHEGLGFSIRGGSEHGV--GIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALK--GSKKLVLSVYSAG 93 (101)
T ss_dssp CTTTCSSEEEEECTTTTC--CEEEEEECTTSHHHHHTCCSSCCEEEETTEECSSCCHHHHHHHSS--SSSSCCEEECCCC
T ss_pred CCCCcccEEEeCCCCCCC--CEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHhhc--CCCeEEEEEEECC
Confidence 356789999875432111 488999999999999999999999999999999998776766665 3567889998876
Q ss_pred C
Q 016195 257 C 257 (393)
Q Consensus 257 ~ 257 (393)
.
T Consensus 94 ~ 94 (101)
T 1uez_A 94 R 94 (101)
T ss_dssp C
T ss_pred c
Confidence 3
No 100
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=98.94 E-value=1.5e-09 Score=87.59 Aligned_cols=73 Identities=22% Similarity=0.402 Sum_probs=60.2
Q ss_pred ceeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeC
Q 016195 178 DMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (393)
Q Consensus 178 ~~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~ 255 (393)
...++|+.+.... .. .++|..|.++|||++|| |++||+|++|||+++.+++.+++.+++++. +.+++|+|.+.
T Consensus 22 ~~~~lG~~l~~~~-~~---gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~-~~~v~L~V~~~ 95 (97)
T 2ejy_A 22 TEEPMGICLKLNE-KQ---SCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKET-KGMISLKVIPN 95 (97)
T ss_dssp SSSCCSEEEEECT-TC---CEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHC-CEEEEEEEECC
T ss_pred CCCCeeEEEEeCC-CC---CEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence 3467888886432 22 38899999999999999 999999999999999987778899998864 66888888764
No 101
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel 3 chimera; PDZ domain, PDZ binding, GIRK3 regulation, early endosomes; 1.68A {Rattus norvegicus} SCOP: b.36.1.0 PDB: 3qdo_A 3qgl_A
Probab=98.94 E-value=2.7e-09 Score=86.95 Aligned_cols=77 Identities=34% Similarity=0.518 Sum_probs=61.4
Q ss_pred eeeEEEEEEeeCCCC----------eeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEE
Q 016195 180 SGIGINLREVPDANG----------VVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVT 249 (393)
Q Consensus 180 ~glGi~~~~~~~~~G----------~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~ 249 (393)
.|+||.+....+..+ ...++|..|.++|||+++||++||+|++|||+++..++..++...++ ..|+.+.
T Consensus 17 ~g~G~~l~~~~~~~~~~~~~~~~~~~p~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~-~~g~~v~ 95 (107)
T 3qe1_A 17 SGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIR-AGEKELI 95 (107)
T ss_dssp TBTCEEEECCSSSCCCCEESSSSEESCCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHH-HCSSEEE
T ss_pred CCCCEEEEcccccCCcceeccccccCCceEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCEEE
Confidence 378888864321111 01135999999999999999999999999999999888899988887 4688999
Q ss_pred EEEEeCCC
Q 016195 250 IEVKHGNC 257 (393)
Q Consensus 250 Ltv~r~~~ 257 (393)
|++.|.+.
T Consensus 96 l~v~r~~~ 103 (107)
T 3qe1_A 96 LTVLSVES 103 (107)
T ss_dssp EEEECSSC
T ss_pred EEEEcCCC
Confidence 99998763
No 102
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Probab=98.94 E-value=2.2e-09 Score=90.42 Aligned_cols=73 Identities=30% Similarity=0.416 Sum_probs=61.1
Q ss_pred eeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhc-CCCCCeEEEEEEeCC
Q 016195 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQ-GPSETFVTIEVKHGN 256 (393)
Q Consensus 180 ~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~-g~~G~~V~Ltv~r~~ 256 (393)
.++|+.+.... +.| ++|..|.++|||++|||++||+|++|||+++..++.+++...+. ...|+.+.|+|.|++
T Consensus 39 ~~lG~~l~~~~-~~g---v~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~ 112 (124)
T 3tsv_A 39 DSVGLRLAGGN-DVG---IFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK 112 (124)
T ss_dssp SCCCEEEEECT-TSC---EEEEEECTTCHHHHTTCCTTEEEEEETTEECSSCCHHHHHHHHHHSCTTCEEEEEEEECH
T ss_pred CceeEEEecCC-CCC---EEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECC
Confidence 56888876422 233 88999999999999999999999999999999988788887665 368899999999875
No 103
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A
Probab=98.94 E-value=5.8e-09 Score=84.89 Aligned_cols=78 Identities=23% Similarity=0.433 Sum_probs=63.2
Q ss_pred eeeeEEEEEEeeC-CCCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 179 MSGIGINLREVPD-ANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 179 ~~glGi~~~~~~~-~~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
..|+||.+....+ ......++|..|.++|||+++| |++||+|++|||+++...+..++...++. .|+.+.|++.|++
T Consensus 20 ~~glG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~ 98 (106)
T 3axa_A 20 QNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTR-TSSVVTLEVAKQG 98 (106)
T ss_dssp SSSCSEEEEEEECSSCSSEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT-CCSEEEEEEECCC
T ss_pred CCccCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCC
Confidence 3678888864211 0112258999999999999999 99999999999999998888888888875 6899999999977
Q ss_pred C
Q 016195 257 C 257 (393)
Q Consensus 257 ~ 257 (393)
.
T Consensus 99 ~ 99 (106)
T 3axa_A 99 A 99 (106)
T ss_dssp S
T ss_pred c
Confidence 3
No 104
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.94 E-value=6.2e-10 Score=90.40 Aligned_cols=75 Identities=16% Similarity=0.253 Sum_probs=62.7
Q ss_pred eeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCCC
Q 016195 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (393)
Q Consensus 180 ~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~~ 257 (393)
.++|+.+....+.+ ..++|..|.++|||++|||++||+|++|||+++..++..++..+++.. |+.+.|+|.|++.
T Consensus 15 ~~lG~~l~~g~~~~--~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~R~g~ 89 (103)
T 1v5l_A 15 APWGFRLSGGIDFN--QPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAA-SYQLCLKIDRAET 89 (103)
T ss_dssp SCCSBCCEEETTTT--EEEECSCBCTTSTTGGGTCCTTCBEEEETTEECSSCCHHHHHHHHTTC-CSEEECEECCCTT
T ss_pred CCcCEEEeccccCC--CCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEECCe
Confidence 45777775432211 258899999999999999999999999999999998889999999876 8999999999874
No 105
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Probab=98.93 E-value=3.6e-09 Score=88.16 Aligned_cols=77 Identities=25% Similarity=0.425 Sum_probs=62.1
Q ss_pred eeeEEEEEEeeCC-CCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCCC
Q 016195 180 SGIGINLREVPDA-NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (393)
Q Consensus 180 ~glGi~~~~~~~~-~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~~ 257 (393)
.|+|+.+....+. .+...++|..|.++|||+++| |++||+|++|||+++.+.+..++...++... ..|+|+|.|++.
T Consensus 36 ~glGf~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~g~ 114 (117)
T 2fne_A 36 DGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTK-GTVTLMVLSSDE 114 (117)
T ss_dssp TBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC-SSEEEEEEECSC
T ss_pred CcccEEEecccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEeCCc
Confidence 6789988643210 112258999999999999999 9999999999999999888889988887544 469999999873
No 106
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=98.93 E-value=5.6e-09 Score=91.89 Aligned_cols=84 Identities=24% Similarity=0.358 Sum_probs=67.0
Q ss_pred CceeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 177 YDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 177 ~~~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
+...++|+.+.... . .++|..|.++|||++|||++||+|++|||+++..+..+....+++...|+++.|+++|++
T Consensus 13 ~~~~~lG~~~~~~~--~---g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~~v~l~vr~~~ 87 (166)
T 1w9e_A 13 DQDGKIGLRLKSID--N---GIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRDRP 87 (166)
T ss_dssp CTTSCCSEEEEEET--T---EEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEECCT
T ss_pred CCCCcEeEEEEeCC--C---CEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEcCC
Confidence 44577899887642 2 489999999999999999999999999999999987545666776677889999996543
Q ss_pred CCceEEEEEEe
Q 016195 257 CGPIESIQVQR 267 (393)
Q Consensus 257 ~~~~~~v~l~r 267 (393)
+..++++++
T Consensus 88 --~~~~v~l~~ 96 (166)
T 1w9e_A 88 --FERTITMHK 96 (166)
T ss_dssp --TCEEEEEEC
T ss_pred --CcEEEEEec
Confidence 456666664
No 107
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=98.93 E-value=3.4e-09 Score=83.00 Aligned_cols=73 Identities=29% Similarity=0.467 Sum_probs=58.8
Q ss_pred eeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhh-cCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEe
Q 016195 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHS-AGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH 254 (393)
Q Consensus 179 ~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~-AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r 254 (393)
..++|+.+....+. + ..++|..|.++|||++ +||++||+|++|||+++.+++..++..+++. .+.+++|++++
T Consensus 13 ~~~lG~~i~~~~~~-~-~~~~V~~V~~gspA~~~agl~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~~ 86 (87)
T 4e34_A 13 HEGLGISITGGKEH-G-VPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQ-QRGEIEFEVVY 86 (87)
T ss_dssp TBCCCEEEEEEGGG-T-EEEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHH-CCSEEEEEEEE
T ss_pred CCcccEEEEccCCC-C-CCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEE
Confidence 45788887643221 1 2488999999999999 7999999999999999999888898888874 56678888764
No 108
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A
Probab=98.93 E-value=4.5e-09 Score=84.38 Aligned_cols=71 Identities=23% Similarity=0.375 Sum_probs=57.5
Q ss_pred eeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEe
Q 016195 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH 254 (393)
Q Consensus 180 ~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r 254 (393)
.++||.+..... ++...++|..|.++|||++|||++||+|++|||+++.+++++++.++++ +..++++|+.
T Consensus 20 ~~~Gf~v~~~~~-~~~~g~~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~l~~~l~---~~~l~ltV~~ 90 (94)
T 3kzd_A 20 DTYGFSLSSVEE-DGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLS---QPSLGLLVRT 90 (94)
T ss_dssp -CCSEEEEEECS-SSSCEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHH---SSEEEEEEEE
T ss_pred CCcCEEEEecCC-CCcCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHh---CCeEEEEEEe
Confidence 478888876432 2223589999999999999999999999999999999998999988886 3567777764
No 109
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.93 E-value=1.4e-09 Score=91.20 Aligned_cols=81 Identities=26% Similarity=0.375 Sum_probs=65.6
Q ss_pred cCceeeeEEEEEEee--CCCCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCC-CCeEEEE
Q 016195 176 RYDMSGIGINLREVP--DANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPS-ETFVTIE 251 (393)
Q Consensus 176 ~~~~~glGi~~~~~~--~~~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~-G~~V~Lt 251 (393)
++...++||.+.... .+.....++|..|.++|||+++| |++||+|++|||+++..++.+++.++++... |+.++|+
T Consensus 23 k~~~~glG~~l~~~~~~~~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~ 102 (122)
T 1v5q_A 23 ADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLE 102 (122)
T ss_dssp CCSSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHTTTTCEEEE
T ss_pred eCCCCccCEEEecccccCCcCCCCcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEE
Confidence 345688999987420 01111247899999999999999 9999999999999999988889988887655 8899999
Q ss_pred EEeCC
Q 016195 252 VKHGN 256 (393)
Q Consensus 252 v~r~~ 256 (393)
|.|++
T Consensus 103 v~R~~ 107 (122)
T 1v5q_A 103 IEFDV 107 (122)
T ss_dssp EEEEC
T ss_pred EEECC
Confidence 99976
No 110
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.92 E-value=2.1e-09 Score=85.23 Aligned_cols=75 Identities=29% Similarity=0.508 Sum_probs=60.6
Q ss_pred eeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 179 ~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
..|+||.+....+.+. .++|..|.++|||+++| |++||+|++|||+++..++..++..+++.. +..+.|++.|.+
T Consensus 15 ~~glG~~l~~~~~~~~--~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~r~~ 90 (93)
T 2dkr_A 15 DEGLGFNIMGGKEQNS--PIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAA-QGSVKLVVRSGP 90 (93)
T ss_dssp TTCCCEEEECSSSSSC--CCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHHC-CSEEEEEECCCC
T ss_pred CCCccEEEecccCCCC--CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCcEEEEEEeCC
Confidence 3688999864221122 47899999999999996 999999999999999998888888888744 467999998865
No 111
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A
Probab=98.92 E-value=3.6e-09 Score=86.23 Aligned_cols=77 Identities=18% Similarity=0.277 Sum_probs=61.5
Q ss_pred CceeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcC--CCCCCEEEEECCEEcCCCCHHHHHHHhcCCC---CCeEEEE
Q 016195 177 YDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG--VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPS---ETFVTIE 251 (393)
Q Consensus 177 ~~~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AG--L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~---G~~V~Lt 251 (393)
....++||.+....+.. ..++|..|.++|||+++| |++||+|++|||+++..+...++..+++... +..+.|+
T Consensus 26 ~~~~~~G~~~~gg~~~~--~~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~~~~~v~l~ 103 (107)
T 3nfk_A 26 DENGRFGFNVKGGYDQK--MPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLL 103 (107)
T ss_dssp CTTSCCCEEEEEEGGGT--EEEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHCGGGSBTTBEEEE
T ss_pred CCCCCCCEEEEccCCCC--CCeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCcEEEEE
Confidence 34467888876432211 258899999999999999 9999999999999999998888888887544 3588998
Q ss_pred EEeC
Q 016195 252 VKHG 255 (393)
Q Consensus 252 v~r~ 255 (393)
|+|+
T Consensus 104 v~r~ 107 (107)
T 3nfk_A 104 VRPN 107 (107)
T ss_dssp EECC
T ss_pred EEcC
Confidence 8873
No 112
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Probab=98.91 E-value=3.3e-09 Score=89.12 Aligned_cols=77 Identities=29% Similarity=0.367 Sum_probs=62.1
Q ss_pred CceeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeC
Q 016195 177 YDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (393)
Q Consensus 177 ~~~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~ 255 (393)
....++|+.+....+.. ..++|..|.++|||+++| |++||+|++|||+++.++++.++..++++.. ..++|++.|.
T Consensus 28 ~~~~~lG~~i~gg~~~~--~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~r~ 104 (125)
T 3hpk_A 28 DAQNLIGISIGGGAQYC--PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK-GEVTIHYNKL 104 (125)
T ss_dssp CTTSCCCEEEEECSSCC--SSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHSC-SEEEEEEEEE
T ss_pred CCCCCcCEEEeccCCCC--CCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEEC
Confidence 34567899886432211 147899999999999999 9999999999999999988999999998654 4599999884
Q ss_pred C
Q 016195 256 N 256 (393)
Q Consensus 256 ~ 256 (393)
.
T Consensus 105 ~ 105 (125)
T 3hpk_A 105 Q 105 (125)
T ss_dssp C
T ss_pred C
Confidence 4
No 113
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.90 E-value=4.4e-09 Score=86.88 Aligned_cols=73 Identities=27% Similarity=0.464 Sum_probs=61.4
Q ss_pred eeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCC-CCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCCC
Q 016195 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGV-RQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (393)
Q Consensus 179 ~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL-~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~~ 257 (393)
..|+|+.+... .. .++|..|.++|||+++|| ++||+|++|||+++.+++.+++..+++... ..+.|+|.|.+.
T Consensus 36 ~~~lG~~i~~~--~~---gv~V~~V~~~spA~~aGll~~GD~I~~vng~~v~~~~~~~~~~~l~~~~-~~v~l~v~r~~~ 109 (113)
T 1va8_A 36 DIPLGATVRNE--MD---SVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMH-GTLTFVLIPSSG 109 (113)
T ss_dssp TCCCCEEEEEC--SS---SEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC-EEEEEEEECCCC
T ss_pred CCceeEEEEeC--CC---CEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEECCc
Confidence 34889988653 12 389999999999999999 999999999999999988899999887544 579999998763
No 114
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}
Probab=98.90 E-value=3.1e-09 Score=87.04 Aligned_cols=73 Identities=21% Similarity=0.286 Sum_probs=59.8
Q ss_pred ceeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 178 DMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 178 ~~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
...|+|+.+... +.| ++|..|.++|||+++| |++||+|++|||+++.+....++..++++. +.++.|++.|..
T Consensus 12 ~~~glG~~i~~~--~~g---v~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~~ 85 (106)
T 2la8_A 12 AGKELGLSLSPN--EIG---CTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGA-NGKVSMEVTRPK 85 (106)
T ss_dssp SSSTTCCEEEEC--SSS---EEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHSC-BSCEEEEEEECC
T ss_pred CCCccCEEEEeC--CCC---EEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCC-CCeEEEEEEeCC
Confidence 345688877542 234 8999999999999999 999999999999999987778877777754 457999999865
No 115
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.90 E-value=5.2e-09 Score=83.97 Aligned_cols=74 Identities=20% Similarity=0.359 Sum_probs=61.9
Q ss_pred CceeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCC-CCCeEEEEEEeC
Q 016195 177 YDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGP-SETFVTIEVKHG 255 (393)
Q Consensus 177 ~~~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~-~G~~V~Ltv~r~ 255 (393)
+.+.|+||.+...+ .| ++|..|.+ +|+++||++||+|++|||+++.++++.++.++|++. .|+.+.|+|.|+
T Consensus 18 ~~~~g~G~~i~~~~--~G---v~V~~v~~--~a~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 90 (96)
T 1ujv_A 18 KGAQGFGFTIADSP--TG---QRVKQILD--IQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRG 90 (96)
T ss_dssp CCSSSSSEEEEEET--TE---EEEEEESC--GGGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEEEEECC
T ss_pred eCCCceeEEEEcCC--CC---EEEEEEec--ccccCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEEC
Confidence 45678999986432 23 78999988 378999999999999999999999889999999876 489999999997
Q ss_pred CC
Q 016195 256 NC 257 (393)
Q Consensus 256 ~~ 257 (393)
+.
T Consensus 91 g~ 92 (96)
T 1ujv_A 91 SG 92 (96)
T ss_dssp SS
T ss_pred CC
Confidence 73
No 116
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=98.90 E-value=2.3e-09 Score=89.26 Aligned_cols=81 Identities=22% Similarity=0.402 Sum_probs=65.4
Q ss_pred cCceeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEe
Q 016195 176 RYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH 254 (393)
Q Consensus 176 ~~~~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r 254 (393)
+....|+||.+....+.. ...++|..|.++|||+++| |++||+|++|||+++..+++.++...++...+..+.+++.|
T Consensus 23 ~~~~~~lG~~i~g~~~~~-~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R 101 (119)
T 1x6d_A 23 KEEGAGLGFSLAGGADLE-NKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTR 101 (119)
T ss_dssp CCTTSCCSEEEECCSSSS-CSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSSSEEEEEEE
T ss_pred eCCCCccCEEEeCCCCCC-CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEc
Confidence 344678999986432210 1137899999999999999 99999999999999998888999988887777778888888
Q ss_pred CCC
Q 016195 255 GNC 257 (393)
Q Consensus 255 ~~~ 257 (393)
++.
T Consensus 102 ~~~ 104 (119)
T 1x6d_A 102 KLT 104 (119)
T ss_dssp CCC
T ss_pred CCC
Confidence 763
No 117
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=98.90 E-value=5.4e-09 Score=82.53 Aligned_cols=59 Identities=22% Similarity=0.330 Sum_probs=51.5
Q ss_pred EEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 197 TLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 197 ~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
.++|..|.++|||+++| |++||+|++|||+++.+++..++..+++... ..+.|++.|++
T Consensus 24 gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~r~g 83 (92)
T 3cyy_A 24 HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSK-GKLKMVVQRDE 83 (92)
T ss_dssp EEEEEEECTTCHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTT-TEEEEEEEC--
T ss_pred CEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CcEEEEEEeCC
Confidence 37899999999999999 9999999999999999777889988887644 58999999977
No 118
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.90 E-value=6.3e-09 Score=84.90 Aligned_cols=78 Identities=18% Similarity=0.328 Sum_probs=62.5
Q ss_pred eeeeEEEEEEe---eC-CCCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEE
Q 016195 179 MSGIGINLREV---PD-ANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVK 253 (393)
Q Consensus 179 ~~glGi~~~~~---~~-~~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~ 253 (393)
..|+||.+... .+ ..+...++|..|.++|||+++| |++||+|++|||+++..++..++..+++. .++.+.|+|.
T Consensus 19 ~~glG~~i~~~~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~ 97 (107)
T 1wf8_A 19 EDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRN-TKGNVRFVIG 97 (107)
T ss_dssp TTBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHH-CCSEEEEEEE
T ss_pred CCcccEEEEecCCCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc-CCCeEEEEEE
Confidence 35789988651 10 0012358999999999999999 99999999999999999888888888875 4789999999
Q ss_pred eCCC
Q 016195 254 HGNC 257 (393)
Q Consensus 254 r~~~ 257 (393)
|.+.
T Consensus 98 R~~~ 101 (107)
T 1wf8_A 98 REKP 101 (107)
T ss_dssp EECC
T ss_pred eCCC
Confidence 8663
No 119
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=98.89 E-value=7e-09 Score=109.18 Aligned_cols=151 Identities=14% Similarity=0.141 Sum_probs=97.4
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHhhhcccChHHHHHHHHHHHHhcCC-CceeecCHHHHhhh----
Q 016195 100 TNEGIVEEAWQIVNDSFLDTGRHRWTPQNWQRKREDILSSSIQTRSKAHGIIKRMLASLGD-PYTRFLSPAEFSKM---- 174 (393)
Q Consensus 100 ~~~~~f~~~W~~v~~~y~d~~~~~~~~~dW~~v~~~y~~~~i~t~~~~~~~i~~ml~~L~D-~ht~~~~~~e~~~~---- 174 (393)
.+.+.|+++++.+...|.... .+++..||.++.++.... ++...++.++..-++ |+..++..-.++..
T Consensus 396 ~g~~sldd~mr~l~~~~~~~~-~~~t~~d~~~~~e~~sG~------dl~~ff~~~l~~t~~~p~~~~l~~~G~~l~~~~~ 468 (597)
T 4fgm_A 396 DHKLTLARVMKELWHEFGKTS-IGTADDTVINWLNQYPGI------DISDFLKDALYNKESLSLVELLQNFGVMVQKQVP 468 (597)
T ss_dssp TTSCCHHHHHHHHHHHHTTTT-CCBCTTHHHHHHHTSTTC------CCHHHHHHHHHSCSCCCCHHHHHTTTEEEEEECC
T ss_pred CCchHHHHHHHHHHHHhCcCC-CCCCHHHHHHHHHHhcCc------CHHHHHHHHHhCCCCcchhHHHhhcceEEEeccC
Confidence 344568888888877775421 246777777776665432 344555666654433 23222221111100
Q ss_pred -----------ccCceeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcC-
Q 016195 175 -----------ARYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQG- 242 (393)
Q Consensus 175 -----------~~~~~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g- 242 (393)
......++|+.+... ++ .++|..|.++|||++|||++||+|++|||+++.. .++...+..
T Consensus 469 ~~~~~~~~~~~~~~~~~~lG~~~~~~---~~--gv~V~~V~~~spA~~AGL~~GD~I~aInG~~v~~---~~l~~~l~~~ 540 (597)
T 4fgm_A 469 VDDNSVGGKASEQPARVNFGAKYKAS---PQ--GLDVLNVYHDESAYHAGLSAGDKIIAIDHLQATE---QSVKRILERY 540 (597)
T ss_dssp SSTTCCCSCCCSCCCSCCCSEEEEEE---TT--EEEEEEECTTSHHHHHTCCTTCEEEEETTEECCT---TTHHHHHTTC
T ss_pred CccccccccccccCCccccceEEecc---CC--eEEEEEeCCCChHHHCCCCCCCEEEEECCEECCH---HHHHHHHHhc
Confidence 001135788888653 23 4889999999999999999999999999999953 445566654
Q ss_pred CCCCeEEEEEEeCCCCceEEEEEEe
Q 016195 243 PSETFVTIEVKHGNCGPIESIQVQR 267 (393)
Q Consensus 243 ~~G~~V~Ltv~r~~~~~~~~v~l~r 267 (393)
++|++|+|+|.|++ +.++++++.
T Consensus 541 ~~g~~v~l~v~R~g--~~~~~~v~l 563 (597)
T 4fgm_A 541 IPGDTVTIHAFRRD--ELMTLELTW 563 (597)
T ss_dssp CTTCEEEEEEEETT--EEEEEEEEC
T ss_pred CCCCEEEEEEEECC--EEEEEEEEe
Confidence 68999999999987 455666654
No 120
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}
Probab=98.89 E-value=3.2e-09 Score=86.08 Aligned_cols=71 Identities=23% Similarity=0.220 Sum_probs=59.1
Q ss_pred eeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcC--CCCCeEEEEEEe
Q 016195 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQG--PSETFVTIEVKH 254 (393)
Q Consensus 179 ~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g--~~G~~V~Ltv~r 254 (393)
..|+|+.+... ++ ..+|..|.++|||++|||++||+|++|||+++...+++++...++. +.|..+.|.|..
T Consensus 27 ~~g~G~~l~~~---~~--~~~I~~V~~gSpA~~AGL~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~~g~~v~LLV~~ 99 (101)
T 3qik_A 27 EEDYGFDIEEK---NK--AVVVKSVQRGSLAEVAGLQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRPLRLLVAT 99 (101)
T ss_dssp SSSSSEEEEEE---TT--EEEEEEECTTSHHHHHTCCTTCBEEEETTEESTTSCHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCcccEEEEcc---CC--CeEEEEECCCCHHHHcCCCCCCEEEEECCEEcCcCCHHHHHHHHHHhhccCCeEEEEEec
Confidence 35678888653 23 4789999999999999999999999999999976668899888876 478888888763
No 121
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=98.89 E-value=5.7e-09 Score=84.99 Aligned_cols=79 Identities=22% Similarity=0.294 Sum_probs=60.7
Q ss_pred CceeeeEEEEEEeeCCC----CeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEE
Q 016195 177 YDMSGIGINLREVPDAN----GVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEV 252 (393)
Q Consensus 177 ~~~~glGi~~~~~~~~~----G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv 252 (393)
....|+|+.+....+.. +...++|..|.++|||+ +||++||+|++|||+++..+...+....++ ..|+.+.|++
T Consensus 16 ~~~~glG~~i~~~~~~~~~~~~~~gv~V~~V~~~spA~-agl~~GD~I~~vng~~v~~~~~~~~~~~~~-~~g~~v~l~v 93 (107)
T 2h2b_A 16 APGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQLQENDRVAMVNGVSMDNVEHAFAVQQLR-KSGKNAKITI 93 (107)
T ss_dssp BTTTBTCEEEEECTTSCCTTTCCCCEEEEEECTTSTTB-TTBCTTCEEEEETTEECTTCCHHHHHHHHH-TCCSEEEEEE
T ss_pred CCCCccCEEEecCcCCCcccCCCCCEEEEEECCCCchh-hCCCCCCEEEEECCEECCCccHHHHHHHhh-CCCCEEEEEE
Confidence 34568999987432100 11148999999999999 999999999999999999987665555554 5788999999
Q ss_pred EeCCC
Q 016195 253 KHGNC 257 (393)
Q Consensus 253 ~r~~~ 257 (393)
.|++.
T Consensus 94 ~R~~~ 98 (107)
T 2h2b_A 94 RRKKG 98 (107)
T ss_dssp EEESC
T ss_pred EECCC
Confidence 98764
No 122
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}
Probab=98.89 E-value=5.1e-09 Score=85.03 Aligned_cols=77 Identities=27% Similarity=0.412 Sum_probs=62.4
Q ss_pred ceeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhc-CCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 178 DMSGIGINLREVPDANGVVTLKVLGLILDGPAHSA-GVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 178 ~~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~A-GL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
...|+||.+....+.+ ..++|..|.++|||+++ ||++||+|++|||+++.+.+..++..+++.. +..++|++.+..
T Consensus 19 ~~~~lG~~l~~g~~~~--~~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~~~~ 95 (103)
T 2dc2_A 19 DHEGLGISITGGKEHG--VPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQ-RGEIEFEVVYVA 95 (103)
T ss_dssp SSSCCCEEEEEEGGGT--EEEEEEEECTTSHHHHHTCCCSSEEEEEETTEESTTSCHHHHHHHHHHC-CSEEEEEEEECC
T ss_pred CCCccCEEEEeccCCC--CCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCcEEEEEEecC
Confidence 3467899887532211 25899999999999995 9999999999999999998899999998854 458999998876
Q ss_pred C
Q 016195 257 C 257 (393)
Q Consensus 257 ~ 257 (393)
.
T Consensus 96 ~ 96 (103)
T 2dc2_A 96 L 96 (103)
T ss_dssp -
T ss_pred C
Confidence 3
No 123
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.89 E-value=5.8e-09 Score=85.48 Aligned_cols=76 Identities=25% Similarity=0.400 Sum_probs=61.9
Q ss_pred eeeEEEEEEeeCC-CCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 180 SGIGINLREVPDA-NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 180 ~glGi~~~~~~~~-~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
.|+||.+....+. .+...++|..|.++|||+++| |++||+|++|||+++...+..++...++. .++.+.|+|.|++
T Consensus 19 ~glG~~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~~ 96 (110)
T 1um1_A 19 SGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRH-GGKKMRFLVAKSD 96 (110)
T ss_dssp TCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHT-CCSEEEEEEECCC
T ss_pred CccCEEEeCCcCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCC
Confidence 5789988642110 011138899999999999999 99999999999999998888888888875 4889999999976
No 124
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.89 E-value=2.6e-09 Score=87.71 Aligned_cols=73 Identities=23% Similarity=0.427 Sum_probs=61.6
Q ss_pred eeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCCC
Q 016195 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (393)
Q Consensus 180 ~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~~ 257 (393)
.++|+.+.... +. .++|..|.++|||+++| |++||+|++|||+++..++..++..+++. .|+.+.|+|.|++.
T Consensus 26 ~~lG~~l~~~~-~~---g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~ 99 (111)
T 2dlu_A 26 SGLGFGIVGGK-TS---GVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRN-CGNSVRMLVARDPA 99 (111)
T ss_dssp SCCCEEEECCS-SS---SBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHHHHHHHHH-HCSEEEEEEEESCT
T ss_pred CccCEEEeccC-CC---CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEeCCC
Confidence 57888886422 12 37899999999999999 99999999999999999888888888875 57899999999764
No 125
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Probab=98.88 E-value=6.2e-09 Score=86.50 Aligned_cols=73 Identities=32% Similarity=0.501 Sum_probs=60.6
Q ss_pred eeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 180 ~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
.|+|+.+....+.. .++|..|.++|||+++| |++||+|++|||+++..+...++...++. .|..+.|++.|.+
T Consensus 25 ~glG~~l~~~~~~~---gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r~~ 98 (119)
T 1tp5_A 25 TGLGFNIVGGEDGE---GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN-AGQTVTIIAQYKP 98 (119)
T ss_dssp SCCCEEEEECGGGC---CEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHT-SCSEEEEEEEECH
T ss_pred CCccEEEecCCCCC---CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECC
Confidence 57999987543222 38999999999999999 99999999999999999887776666664 5788999998865
No 126
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.88 E-value=2.7e-09 Score=84.79 Aligned_cols=67 Identities=21% Similarity=0.381 Sum_probs=56.5
Q ss_pred eeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeC
Q 016195 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (393)
Q Consensus 179 ~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~ 255 (393)
..++|+.+. .| +|..|.++|||+++||++||+|++|||+++.+.+..++..+++ ..|+.+.|++.+.
T Consensus 23 ~~~lG~~~~-----~G----~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~-~~g~~v~l~v~p~ 89 (90)
T 1y7n_A 23 RYQLGFSVQ-----NG----IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILS-NAVGEIHMKTMPA 89 (90)
T ss_dssp TSCCCEEEE-----TT----EEEEECTTSHHHHHTCCSSCEEEEETTEECTTSCHHHHHHHHH-HCCEEEEEEEECC
T ss_pred ccccCeEec-----CC----EEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCeEEEEEEEC
Confidence 456787662 24 7899999999999999999999999999998888899999887 3588899988753
No 127
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A
Probab=98.88 E-value=6e-09 Score=94.12 Aligned_cols=74 Identities=31% Similarity=0.477 Sum_probs=63.4
Q ss_pred eeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 179 ~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
..|+|+.+....+.. ..++|..|.++|||+++||++||+|++|||+++.++++.++..+++. |..+.|+|.|.+
T Consensus 95 ~~~lG~~i~~~~~~~--~~~~V~~V~~gspA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~l~~--~~~v~l~v~r~g 168 (192)
T 3k1r_A 95 PEGLGLSVRGGLEFG--CGLFISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIRT--EKTVSIKVRHIG 168 (192)
T ss_dssp TTCCCEEEEEEGGGT--EEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHTS--SSEEEEEEEECC
T ss_pred CCceeEEEEcccccC--CCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHcC--CCeEEEEEEECC
Confidence 458899886432111 25899999999999999999999999999999999888999999986 899999999987
No 128
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.88 E-value=2.8e-09 Score=89.46 Aligned_cols=77 Identities=26% Similarity=0.452 Sum_probs=62.3
Q ss_pred eeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCCC
Q 016195 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (393)
Q Consensus 179 ~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~~ 257 (393)
..|+||.+....+. ....++|..|.++|||+++| |++||+|++|||+++.+++..++...++.. +..+.|+|.|.+.
T Consensus 35 ~~glG~~l~~~~~~-~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~~~ 112 (124)
T 2daz_A 35 KNGLGLSLAGNKDR-SRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTA-PSKVKLVFIRNED 112 (124)
T ss_dssp SSCCCEEEECBSST-TSCCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSCHHHHHHHHHHS-CSEEEEEEEECTT
T ss_pred CCccCEEEeccCCC-CcCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeCCC
Confidence 46899988643221 11248999999999999999 999999999999999998888888888644 5699999999763
No 129
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=7.1e-09 Score=82.31 Aligned_cols=72 Identities=22% Similarity=0.374 Sum_probs=60.0
Q ss_pred ceeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 178 DMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 178 ~~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
...++|+.+... .. .++|..|.++|||+++| |++||+|++|||+++ +.+++++.++++.. +.++.|++.|..
T Consensus 16 ~~~~lG~~i~~~--~~---~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v-~~~~~~~~~~l~~~-~~~v~l~v~~~~ 88 (91)
T 2e7k_A 16 AGEHLGVTFRVE--GG---ELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRNA-SGSVILKILSGP 88 (91)
T ss_dssp TTCCCCEEEEES--SS---SEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC-TTCHHHHHHHHHTC-CSSBCEEEECCS
T ss_pred CCCcEeEEEEec--CC---CEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC-CCCHHHHHHHHHcC-CCeEEEEEEECC
Confidence 346789988753 22 38899999999999987 999999999999999 77789999999864 678899988753
No 130
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Probab=98.87 E-value=4.6e-09 Score=93.37 Aligned_cols=75 Identities=21% Similarity=0.344 Sum_probs=62.5
Q ss_pred eeeEEEEEEe---eC-CCCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEe
Q 016195 180 SGIGINLREV---PD-ANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH 254 (393)
Q Consensus 180 ~glGi~~~~~---~~-~~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r 254 (393)
.|+||.+... .+ ..+...++|..|.++|||+++| |++||+|++|||+++.+++..++..+|++ .|..|+|+|.|
T Consensus 91 ~glG~~i~g~~~g~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~-~g~~v~L~V~R 169 (170)
T 3egg_C 91 EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRN-TKGRVRFMIGR 169 (170)
T ss_dssp TBSSEEEEEECSSSSCCSSSBEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHHHHHHHH-CCSEEEEEEEE
T ss_pred CeEeEEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEe
Confidence 5899998751 10 0011258999999999999999 99999999999999999999999999986 67899999988
Q ss_pred C
Q 016195 255 G 255 (393)
Q Consensus 255 ~ 255 (393)
+
T Consensus 170 ~ 170 (170)
T 3egg_C 170 E 170 (170)
T ss_dssp C
T ss_pred C
Confidence 4
No 131
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.86 E-value=6.4e-10 Score=89.90 Aligned_cols=73 Identities=22% Similarity=0.254 Sum_probs=60.2
Q ss_pred CceeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 177 YDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 177 ~~~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
+...++|+.+... . .++|..|.++|||++|||++||+|++|||+++..++..++..+++.. +..+.|+|.|++
T Consensus 23 ~~~~g~G~~~~~~---~---~~~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~R~~ 95 (100)
T 1whd_A 23 RGKDGFGFTICCD---S---PVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSC-PSEIILLVWRVS 95 (100)
T ss_dssp CCSSSSSCBCCCS---S---SCBCCBCCTTSHHHHHTCCSSCEEEEETTEECTTCCHHHHHHHHHHC-SSEEEEEEEECC
T ss_pred CCCCeeeEEEeCC---C---CEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEECC
Confidence 3456788876432 2 37899999999999999999999999999999998888988888754 445999999875
No 132
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=1.3e-09 Score=88.06 Aligned_cols=74 Identities=26% Similarity=0.346 Sum_probs=59.1
Q ss_pred eeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhc-CCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCCC
Q 016195 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSA-GVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (393)
Q Consensus 180 ~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~A-GL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~~ 257 (393)
.++|+.+....+. . ..++|..|.++|||++| ||++||+|++|||+++..+ ..++..+++. .++.+.|+|.|++.
T Consensus 21 ~~~G~~~~gg~~~-~-~~v~V~~V~~~spA~~agGL~~GD~I~~ing~~v~~~-~~~~~~~~~~-~~~~v~l~v~R~~~ 95 (100)
T 2edp_A 21 APWGFTLKGGLEH-C-EPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGS-RQEALILIKG-SFRILKLIVRRRNS 95 (100)
T ss_dssp SCCCCCEEEEGGG-T-EEEEECCCCTTSHHHHHTSCCTTCEEEEETTEECCSC-SHHHHHHHHT-CCSSCEEEEEECCC
T ss_pred CCcCEEEeccCCC-C-CCeEEEEECCCCHHHHcCCCCCCCEEEEECCEEccch-HHHHHHHHHh-CCCeEEEEEEeCCC
Confidence 4678877642211 1 24789999999999999 9999999999999999986 5677777775 47889999999873
No 133
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}
Probab=98.86 E-value=9.5e-09 Score=87.63 Aligned_cols=65 Identities=14% Similarity=0.161 Sum_probs=54.6
Q ss_pred EEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCC-CCCeEEEEEEeCCCCceEEEEEEe
Q 016195 198 LKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGP-SETFVTIEVKHGNCGPIESIQVQR 267 (393)
Q Consensus 198 l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~-~G~~V~Ltv~r~~~~~~~~v~l~r 267 (393)
++|..|.++|||+ |||++||+|++|||+++..+ .++...+... .|++++|++.|++ +..+++++.
T Consensus 59 ~~V~~V~~~spA~-aGL~~GD~I~~inG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g--~~~~~~v~~ 124 (134)
T 2l97_A 59 VIVRSVQSNMPAN-GHLEKYDVITKVDDKEIASS--TDLQSALYNHSIGDTIKITYYRNG--KEETTSIKL 124 (134)
T ss_dssp EEEEECSTTSGGG-TTSCSSCEEEEETTEECCCH--HHHHHHHHHSSTTCEEEEEEEETT--EEEEEEEEC
T ss_pred EEEEEECCCCchH-HCCCCCCEEEEECCEEcCCH--HHHHHHHHhCCCCCEEEEEEEECC--EEEEEEEEE
Confidence 7899999999999 99999999999999999884 6677666544 7899999999987 456666654
No 134
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=98.86 E-value=1e-09 Score=85.37 Aligned_cols=70 Identities=26% Similarity=0.409 Sum_probs=58.4
Q ss_pred eeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 180 ~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
.|+|+.+.. ..+ ++|..|.++|||+++||++||+|++|||+++..++..++..+++.. +..++|++.|+.
T Consensus 13 ~g~G~~~~~---~~~---~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~R~~ 82 (83)
T 2kv8_A 13 AGYGFTLSG---QAP---CVLSCVMRGSPADFVGLRAGDQILAVNEINVKKASHEDVVKLIGKC-SGVLHMVIAEGV 82 (83)
T ss_dssp SCCSCBCCC---SSS---CBCCBCCTTSTTTTTTCCTTCEEEEETTEECSSCCHHHHHHHHTTC-SSCEEEEEECCC
T ss_pred CcccEEEEc---CCC---eEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEcCC
Confidence 577877642 123 7899999999999999999999999999999999888888888744 567999998864
No 135
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A
Probab=98.86 E-value=7.6e-09 Score=85.77 Aligned_cols=77 Identities=29% Similarity=0.367 Sum_probs=59.9
Q ss_pred CceeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeC
Q 016195 177 YDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (393)
Q Consensus 177 ~~~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~ 255 (393)
+...++|+.+....+.. ..++|..|.++|||+++| |++||+|++|||+++.+.+..++..++++.. ..++|++.+.
T Consensus 33 ~~~~~lG~~l~~~~~~~--~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~~~ 109 (114)
T 2gzv_A 33 DAQNLIGISIGGGAQYC--PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK-GEVTIHYNKL 109 (114)
T ss_dssp CTTSCCSEEEEECCC----CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC-SEEEEEEECC
T ss_pred CCCCcEeEEEEeCCCCC--CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEec
Confidence 34456899886432211 138899999999999999 9999999999999998777889988887544 4588888764
Q ss_pred C
Q 016195 256 N 256 (393)
Q Consensus 256 ~ 256 (393)
.
T Consensus 110 ~ 110 (114)
T 2gzv_A 110 Q 110 (114)
T ss_dssp C
T ss_pred c
Confidence 3
No 136
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.85 E-value=1.5e-09 Score=88.28 Aligned_cols=75 Identities=25% Similarity=0.314 Sum_probs=61.4
Q ss_pred eeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCCC
Q 016195 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (393)
Q Consensus 179 ~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~~ 257 (393)
..++|+.+.......| ++|..|.++|||+++||++||+|++|||+++..++..++...++. .+..+.|++.|.+.
T Consensus 18 ~~~~G~~l~~~~~~~g---~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r~~~ 92 (106)
T 2eei_A 18 GGSYGFSLKTVQGKKG---VYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVKK-SGSRVMFLLVDKET 92 (106)
T ss_dssp SSSCSCCEECCSSCCS---CEECCCCTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHH-HCSEEEEEECCTTT
T ss_pred CCCCCEEEEeccCCCC---EEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEcCch
Confidence 4578888754332233 789999999999999999999999999999998888888887763 46789999988764
No 137
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A
Probab=98.84 E-value=5.6e-09 Score=88.22 Aligned_cols=77 Identities=30% Similarity=0.453 Sum_probs=61.7
Q ss_pred eeeeEEEEEEeeC----CC---CeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEE
Q 016195 179 MSGIGINLREVPD----AN---GVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTI 250 (393)
Q Consensus 179 ~~glGi~~~~~~~----~~---G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~L 250 (393)
..++||.+....+ .. ....++|..|.++|||+++| |++||+|++|||+++.+.+..++..+++. .+..+.|
T Consensus 41 ~~~lG~~i~~~~~~~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~-~~~~v~l 119 (128)
T 1nf3_C 41 EKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIA-NSRNLII 119 (128)
T ss_dssp TSCCCEEEEEEEEEEEETTEEEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCCHHHHHHHHHH-TTTSEEE
T ss_pred CCCccEEEEccccccccccccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEE
Confidence 4678888863311 00 01148899999999999999 99999999999999998889999999874 4567999
Q ss_pred EEEeCC
Q 016195 251 EVKHGN 256 (393)
Q Consensus 251 tv~r~~ 256 (393)
+|.|.+
T Consensus 120 ~v~r~~ 125 (128)
T 1nf3_C 120 TVRPAN 125 (128)
T ss_dssp EEECCC
T ss_pred EEEECC
Confidence 999876
No 138
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=5.1e-09 Score=87.27 Aligned_cols=76 Identities=26% Similarity=0.420 Sum_probs=61.4
Q ss_pred eeeEEEEEEeeCCC---CeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeC
Q 016195 180 SGIGINLREVPDAN---GVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (393)
Q Consensus 180 ~glGi~~~~~~~~~---G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~ 255 (393)
.++||.+....+.. +...++|..|.++|||+++| |++||+|++|||+++..+...++...++. .++.+.|+|.|.
T Consensus 28 ~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~ 106 (120)
T 2eno_A 28 SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRN-AGYAVSLRVQHR 106 (120)
T ss_dssp SSCSEEEECCTTTCSSSSCCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHHHHHHHHH-HCSEEEEEEEEE
T ss_pred CCCCEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeC
Confidence 78999987422100 01148999999999999999 99999999999999999988888888874 478899999886
Q ss_pred C
Q 016195 256 N 256 (393)
Q Consensus 256 ~ 256 (393)
+
T Consensus 107 ~ 107 (120)
T 2eno_A 107 L 107 (120)
T ss_dssp E
T ss_pred C
Confidence 5
No 139
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.84 E-value=2.6e-09 Score=88.88 Aligned_cols=79 Identities=19% Similarity=0.289 Sum_probs=63.1
Q ss_pred cCceeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhc--CCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCC---CeEEE
Q 016195 176 RYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSA--GVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSE---TFVTI 250 (393)
Q Consensus 176 ~~~~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~A--GL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G---~~V~L 250 (393)
++...++||.+....+.. ..++|..|.++|||++| ||++||+|++|||+++..+++.++..+++...+ ..+.|
T Consensus 23 k~~~~~~G~~l~gg~~~~--~~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~~v~~~~~~~~~~~~~~~~~~~~~~v~l 100 (119)
T 2cs5_A 23 PDENGRFGFNVKGGYDQK--MPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELML 100 (119)
T ss_dssp CCSSSCCSEEEEEEGGGT--EEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHCCSSCEEE
T ss_pred eCCCCCcCEEEecccCCC--CCeEEEEECCCCHHHHhhcCCCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCCEEEE
Confidence 344567899886532211 14899999999999999 999999999999999999888888888875433 58999
Q ss_pred EEEeCC
Q 016195 251 EVKHGN 256 (393)
Q Consensus 251 tv~r~~ 256 (393)
+|.|+.
T Consensus 101 ~v~R~~ 106 (119)
T 2cs5_A 101 LVRPNA 106 (119)
T ss_dssp EEECCC
T ss_pred EEEccc
Confidence 999876
No 140
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}
Probab=98.84 E-value=6.3e-09 Score=85.68 Aligned_cols=78 Identities=21% Similarity=0.313 Sum_probs=62.7
Q ss_pred eeeeEEEEEEe---eC-CCCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEE
Q 016195 179 MSGIGINLREV---PD-ANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVK 253 (393)
Q Consensus 179 ~~glGi~~~~~---~~-~~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~ 253 (393)
..|+|+.+... .+ ..+...++|..|.++|||+++| |++||+|++|||+++.+++..++...++. .|+.+.|++.
T Consensus 14 ~~glG~~l~~~~~~~~~~~~~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~ 92 (113)
T 2g5m_B 14 SEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRN-TKGRVRFMIG 92 (113)
T ss_dssp SSCCCCEEEEEECCCCSSSCCEEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHHHHHHHHHH-SCSSCEEEEE
T ss_pred CCCCCEEEEecCCCCcCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc-CCCeEEEEEE
Confidence 35788887651 00 0012258999999999999999 99999999999999998888888888875 4889999999
Q ss_pred eCCC
Q 016195 254 HGNC 257 (393)
Q Consensus 254 r~~~ 257 (393)
|++.
T Consensus 93 R~~~ 96 (113)
T 2g5m_B 93 RERP 96 (113)
T ss_dssp ECCC
T ss_pred eCCC
Confidence 9874
No 141
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.84 E-value=1.1e-08 Score=84.89 Aligned_cols=73 Identities=21% Similarity=0.331 Sum_probs=59.5
Q ss_pred eeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCCC
Q 016195 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (393)
Q Consensus 180 ~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~~ 257 (393)
.++|+.+.... +. .++|..|.++|||+++||++||+|++|||+++..+...+....++ ..|+.+.|+|.|++.
T Consensus 30 ~~lG~~~~~~~-~~---gv~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~~-~~g~~v~l~v~r~~~ 102 (117)
T 1uit_A 30 EPLGISIVSGE-KG---GIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQARLIIG-QQCDTITILAQYNPH 102 (117)
T ss_dssp CCCCEEEEECT-TS---CEEEEEECTTSHHHHHTCCTTCEECEETTEETTTCCHHHHHHHTT-SCCSEEEEEECCCSC
T ss_pred CCccEEEEccC-CC---CEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCeEEEEEEECCc
Confidence 57888876432 22 389999999999999999999999999999999987666654444 578899999999763
No 142
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=98.84 E-value=1.1e-08 Score=78.51 Aligned_cols=59 Identities=22% Similarity=0.330 Sum_probs=51.1
Q ss_pred EEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 197 TLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 197 ~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
.++|..|.++|||+++| |++||+|++|||+++.+++..++..+++... ..+.|++.|++
T Consensus 22 gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~g 81 (81)
T 2rcz_A 22 HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSK-GKLKMVVQRDE 81 (81)
T ss_dssp EEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTST-TEEEEEEEC--
T ss_pred CEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CeEEEEEEeCC
Confidence 37899999999999999 9999999999999999877889988887654 48899998753
No 143
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.84 E-value=1.9e-09 Score=89.47 Aligned_cols=94 Identities=19% Similarity=0.251 Sum_probs=69.6
Q ss_pred CceeecCHHHHhhh----ccCceeeeEEEEEEeeCCC----CeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCC
Q 016195 161 PYTRFLSPAEFSKM----ARYDMSGIGINLREVPDAN----GVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKS 232 (393)
Q Consensus 161 ~ht~~~~~~e~~~~----~~~~~~glGi~~~~~~~~~----G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~ 232 (393)
+.+.|++..+++.. .++...|+||.+....+.. +...++|..|.++|||+ +||++||+|++|||+++..++
T Consensus 3 ~~s~~~~~~~~~~~~v~l~k~~~~glG~~i~gg~~~~~~~~~~~gv~V~~V~~~spA~-~gL~~GD~I~~Vng~~v~~~~ 81 (117)
T 2csj_A 3 SGSSGMEEVIWEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GLLQENDRVVMVNGTPMEDVL 81 (117)
T ss_dssp CSSCCCSCEEEEEEEEEEECCSSSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-HHBCTTCEEEEESSCBCBTCC
T ss_pred CCCCCcccccceEEEEEEEECCCCccCEEEeCCcCCccccCCCCCEEEEEECCCCccc-ccCCCCCEEEEECCEECCCcC
Confidence 44556665554432 2344578999986432100 12247899999999997 999999999999999999988
Q ss_pred HHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 233 AFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 233 ~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
..++..+++. .++.+.|+|.|.+
T Consensus 82 ~~~~~~~l~~-~~~~v~l~v~R~~ 104 (117)
T 2csj_A 82 HSFAVQQLRK-SGKIAAIVVKRPR 104 (117)
T ss_dssp HHHHHHHHHH-SCSEEEEEEEEEE
T ss_pred HHHHHHHHhc-CCCeEEEEEEECC
Confidence 8888888875 5889999998865
No 144
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=98.84 E-value=1e-08 Score=80.86 Aligned_cols=59 Identities=20% Similarity=0.276 Sum_probs=51.8
Q ss_pred EEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 197 TLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 197 ~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
.++|..|.++|||+++| |+.||+|++|||+++.+.+++++.+++++.. .++.|++.+..
T Consensus 22 gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~-~~v~L~v~~~~ 81 (88)
T 3e17_A 22 QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSR-GKLQLVVLRDL 81 (88)
T ss_dssp EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHTT-TEEEEEECCC-
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEeCCC
Confidence 48899999999999999 9999999999999999988999999998654 47888887654
No 145
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.83 E-value=9.9e-09 Score=83.71 Aligned_cols=77 Identities=17% Similarity=0.283 Sum_probs=61.4
Q ss_pred eeeeEEEEEEeeCC------CCeeEEEEEEEcCCChhhhc-CCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEE
Q 016195 179 MSGIGINLREVPDA------NGVVTLKVLGLILDGPAHSA-GVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIE 251 (393)
Q Consensus 179 ~~glGi~~~~~~~~------~G~~~l~V~~V~~gsPA~~A-GL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Lt 251 (393)
..++||.+....+. .....++|..|.++|||+++ ||++||+|++|||+++...+..++..+++. .+..+.|+
T Consensus 18 ~~~lG~~i~g~~~~~~~~~~~~~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~~~~~~~~~~~-~~~~v~l~ 96 (107)
T 1uhp_A 18 SGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKT-AKEPIVVQ 96 (107)
T ss_dssp SSCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHHHH-CCSSEEEE
T ss_pred CCccCEEEEcCCCCcccccccCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCcEEEE
Confidence 46789988632110 00114889999999999999 899999999999999999888888888874 56789999
Q ss_pred EEeCC
Q 016195 252 VKHGN 256 (393)
Q Consensus 252 v~r~~ 256 (393)
+.|.+
T Consensus 97 v~R~~ 101 (107)
T 1uhp_A 97 VLRRT 101 (107)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 98865
No 146
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=98.83 E-value=1.1e-08 Score=81.49 Aligned_cols=74 Identities=18% Similarity=0.212 Sum_probs=58.6
Q ss_pred eeEEEEEEeeCC------CCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEe
Q 016195 181 GIGINLREVPDA------NGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH 254 (393)
Q Consensus 181 glGi~~~~~~~~------~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r 254 (393)
++||.+....+. .....++|..|.++|||++ ||++||+|++|||+++......++...++ ..++.+.|+|.|
T Consensus 14 ~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~~~~~~~~~~-~~~~~v~l~v~R 91 (95)
T 1mfg_A 14 ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLK-TFQNTVELIIVR 91 (95)
T ss_dssp SCSEEEEECBTSCCCSSSTTCCCEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCBHHHHHHHHH-HCCSEEEEEEEE
T ss_pred CCCEEEeCCcCccCCccccCCCCEEEEEECCCCchhh-CCCCCCEEEEECCEEcCCCCHHHHHHHhh-cCCCeEEEEEEe
Confidence 688888642110 0011489999999999999 99999999999999999988778777776 468899999988
Q ss_pred CC
Q 016195 255 GN 256 (393)
Q Consensus 255 ~~ 256 (393)
+.
T Consensus 92 ~~ 93 (95)
T 1mfg_A 92 EV 93 (95)
T ss_dssp EC
T ss_pred CC
Confidence 64
No 147
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.83 E-value=6.6e-09 Score=87.60 Aligned_cols=75 Identities=21% Similarity=0.321 Sum_probs=60.2
Q ss_pred eeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCCCC
Q 016195 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNCG 258 (393)
Q Consensus 180 ~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~~~ 258 (393)
.++|+.+....... ..++|..|.++|||+++||++||+|++|||+++..+...++...++. +..+.|+|.|++..
T Consensus 32 ~~lG~~~~~~~~~~--~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~~~~--~~~v~l~v~R~g~~ 106 (128)
T 1uf1_A 32 RSLGLTIRGGAEYG--LGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKS--SRHLILTVKDVGRL 106 (128)
T ss_dssp CCCCEEEECCTTTT--CCCEEEEECTTCHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHTT--CSEEEEEEECCSCC
T ss_pred CccCEEEECcccCC--CCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHhc--CCeEEEEEEECCcc
Confidence 45788775421111 13789999999999999999999999999999999887778888864 56999999998743
No 148
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=98.82 E-value=5.9e-09 Score=82.31 Aligned_cols=65 Identities=15% Similarity=0.228 Sum_probs=54.6
Q ss_pred EEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCCCCceEEEEEE
Q 016195 198 LKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNCGPIESIQVQ 266 (393)
Q Consensus 198 l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~~~~~~~v~l~ 266 (393)
++|..|.++|||+++||++||+|++|||+++.. ..++...+....|+.+.+++.|++ ...+++++
T Consensus 6 ~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~--~~~~~~~l~~~~g~~v~l~v~R~g--~~~~~~v~ 70 (91)
T 2zpm_A 6 PVLENVQPNSAASXAGLQAGDRIVXVDGQPLTQ--WVTFVMLVRDNPGXSLALEIERQG--SPLSLTLI 70 (91)
T ss_dssp CBCSEECTTSHHHHTTCCTTCEEEEETTEECCC--HHHHHHHHHHCTTCCEEEEEEETT--EEEEEEEC
T ss_pred eEEEEECCCChHHhcCCCCCCEEEEECCeEcCC--HHHHHHHHhcCCCCeEEEEEEECC--eEEEEEEE
Confidence 468889999999999999999999999999987 467777777667889999999977 44555554
No 149
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}
Probab=98.32 E-value=4.3e-10 Score=93.15 Aligned_cols=92 Identities=26% Similarity=0.411 Sum_probs=64.5
Q ss_pred CCCceeecCHHHHhhh-----ccCceeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhh-cCCCCCCEEEEECCEEcCCCC
Q 016195 159 GDPYTRFLSPAEFSKM-----ARYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHS-AGVRQGDEVLAVNGVDVRGKS 232 (393)
Q Consensus 159 ~D~ht~~~~~~e~~~~-----~~~~~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~-AGL~~GD~IlsVnG~~v~~~~ 232 (393)
.|+|+.++...-+... .+....|+|+.+....+.+ ..++|..|.++|||++ +||++||+|++|||+++.+.+
T Consensus 13 ~~~~~~~me~~~~~~~~~v~l~k~~~~glG~~l~~g~~~~--~gv~V~~V~~~spA~~~aGL~~GD~Il~ING~~v~~~~ 90 (112)
T 2lob_A 13 GHIEGRHMENLYFQGIRKVLLLKEDHEGLGISITGGKEHG--VPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTK 90 (112)
Confidence 3677776654333221 1334468888876422111 1478999999999999 999999999999999998877
Q ss_pred HHHHHHHhcCCCCCeEEEEEE
Q 016195 233 AFEVSSLLQGPSETFVTIEVK 253 (393)
Q Consensus 233 ~~~v~~~L~g~~G~~V~Ltv~ 253 (393)
..++..+++.. +..++|+|.
T Consensus 91 ~~~~~~~l~~~-~~~v~l~V~ 110 (112)
T 2lob_A 91 HKEAVTILSQQ-RGEIEFEVV 110 (112)
Confidence 77888888643 344666654
No 150
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=8.7e-09 Score=85.58 Aligned_cols=72 Identities=22% Similarity=0.333 Sum_probs=58.5
Q ss_pred eeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 181 GIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 181 glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
++||.+..... .+...++|..|.++|||++|||++||+|++|||+++..+.+.++..++++ ..+.|+|+|..
T Consensus 30 ~~G~~v~~~~~-~~~~gv~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~~---~~v~l~v~R~p 101 (114)
T 2d8i_A 30 TYGFSLSSVEE-DGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQ---PSLGLLVRTYP 101 (114)
T ss_dssp CCCCEEEEEEE-TTEEEEEEEECCTTSSHHHHTCCTTCCEEEESSCBGGGCCHHHHHHHHTS---SEEEEEEEECC
T ss_pred ccCEEEEecCc-CCcCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhC---CcEEEEEEECC
Confidence 56777654332 12235899999999999999999999999999999999888888888874 38899998865
No 151
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=98.81 E-value=2.5e-08 Score=89.11 Aligned_cols=79 Identities=25% Similarity=0.322 Sum_probs=62.2
Q ss_pred eeeeEEEEEEeeCCC---CeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEe
Q 016195 179 MSGIGINLREVPDAN---GVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH 254 (393)
Q Consensus 179 ~~glGi~~~~~~~~~---G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r 254 (393)
..|+||.+....+.. +...++|..|.++|||+++| |++||+|++|||+++..++..++..+++. .|..+.|++.|
T Consensus 15 ~~~lG~~i~~g~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~r 93 (196)
T 3gsl_A 15 NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKE-AGSIVRLYVMR 93 (196)
T ss_dssp TTBSSEEEECCTTSCTTSSCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT-SCSEEEEEEEE
T ss_pred CCCCCEEEEcccCCcccCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCcEEEEEEe
Confidence 356888886432110 01148999999999999999 99999999999999999988777777764 58899999998
Q ss_pred CCCC
Q 016195 255 GNCG 258 (393)
Q Consensus 255 ~~~~ 258 (393)
.+..
T Consensus 94 ~~~~ 97 (196)
T 3gsl_A 94 RKPP 97 (196)
T ss_dssp ECCC
T ss_pred cCCC
Confidence 7643
No 152
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.81 E-value=5.8e-09 Score=86.15 Aligned_cols=78 Identities=24% Similarity=0.359 Sum_probs=63.3
Q ss_pred eeeeEEEEEEeeC--CCCe---eEEEEEEEcCCChhhh-cCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEE
Q 016195 179 MSGIGINLREVPD--ANGV---VTLKVLGLILDGPAHS-AGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEV 252 (393)
Q Consensus 179 ~~glGi~~~~~~~--~~G~---~~l~V~~V~~gsPA~~-AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv 252 (393)
..++||.+....+ ..|. ..++|..|.++|||++ +||++||+|++|||+++..+++.++..+++. .|..+.|+|
T Consensus 21 ~~~lGf~l~~~~~~~~~g~~~~~~~~V~~V~~~spA~~~agL~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v 99 (114)
T 1uew_A 21 NEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKD-AGLSVTLRI 99 (114)
T ss_dssp TSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHHHH-TTTEEEEEE
T ss_pred CCCCCEEEEeecccCCCCcccccCeEEEEECCCChHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEE
Confidence 4578998864211 0121 1358999999999999 9999999999999999999888999999985 789999999
Q ss_pred EeCCC
Q 016195 253 KHGNC 257 (393)
Q Consensus 253 ~r~~~ 257 (393)
.|++.
T Consensus 100 ~r~~~ 104 (114)
T 1uew_A 100 IPQEE 104 (114)
T ss_dssp CCCSC
T ss_pred EeCCc
Confidence 99763
No 153
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=98.80 E-value=1.8e-08 Score=81.36 Aligned_cols=64 Identities=22% Similarity=0.340 Sum_probs=53.1
Q ss_pred EEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcC-CCCCeEEEEEEeCCCCceEEEEEE
Q 016195 198 LKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQG-PSETFVTIEVKHGNCGPIESIQVQ 266 (393)
Q Consensus 198 l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g-~~G~~V~Ltv~r~~~~~~~~v~l~ 266 (393)
++|..|.++|||++ ||++||+|++|||+++..+ .++...+.. ..|+.+.|++.|++ +..+++++
T Consensus 9 v~V~~V~~~spA~~-GL~~GD~I~~Ing~~v~~~--~dl~~~l~~~~~g~~v~l~v~R~g--~~~~~~v~ 73 (100)
T 3i18_A 9 VYVMSVKDDVPAAD-VLHAGDLITEIDGNAFKSS--QEFIDYIHSKKVGDTVKINYKHGD--KNEQADIK 73 (100)
T ss_dssp EEEEEECTTSGGGG-TCCTTCEEEEETTBCCSSH--HHHHHHHHTSCTTCEEEEEEEETT--EEEEEEEE
T ss_pred EEEEEeCCCCchHH-CCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCCEEEEEEEECC--EEEEEEEE
Confidence 78999999999995 9999999999999999874 677777765 47899999999977 34455444
No 154
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.80 E-value=3.7e-09 Score=86.05 Aligned_cols=78 Identities=22% Similarity=0.420 Sum_probs=62.3
Q ss_pred eeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCC----CCCeEEEEEE
Q 016195 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGP----SETFVTIEVK 253 (393)
Q Consensus 179 ~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~----~G~~V~Ltv~ 253 (393)
..|+||.+....+ .+...++|..|.+++||+++| |++||+|++|||+++..++++++.++|+.. .++.+++.+.
T Consensus 16 ~~glG~~i~gg~~-~~~~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~~~i~l~v~ 94 (103)
T 1ufx_A 16 AATLGIAIEGGAN-TRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLVT 94 (103)
T ss_dssp SSSCCEEEECBTT-SSCSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSSCSEEEEEEC
T ss_pred CCcCCeEEECCCC-CCCCcEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhcccCCCCeEEEEEE
Confidence 3689999864322 111124899999999999999 999999999999999999899998888753 6778888888
Q ss_pred eCCC
Q 016195 254 HGNC 257 (393)
Q Consensus 254 r~~~ 257 (393)
|.+.
T Consensus 95 r~~~ 98 (103)
T 1ufx_A 95 EFNS 98 (103)
T ss_dssp CCCC
T ss_pred Eccc
Confidence 8653
No 155
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.80 E-value=7.2e-09 Score=86.56 Aligned_cols=60 Identities=22% Similarity=0.354 Sum_probs=55.1
Q ss_pred EEEEEEEcC--CChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCCC
Q 016195 197 TLKVLGLIL--DGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (393)
Q Consensus 197 ~l~V~~V~~--gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~~ 257 (393)
.++|..|.+ +|||++|||++||+|++|||+++..+.++++...++.. |+.+.|+|.|++.
T Consensus 45 gv~V~~V~~~~~spA~~aGL~~GD~Il~Vng~~v~~~~~~dl~~~l~~~-g~~v~l~v~R~g~ 106 (118)
T 2yub_A 45 TVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQT-SQTLQLLIEHDPV 106 (118)
T ss_dssp EEEEEECCTTTSCTTHHHHCCTTCCEEEESSSBTTTSCHHHHHHHHHCC-SSCEEEEEEECSS
T ss_pred cEEEEEecCCCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHhC-CCEEEEEEEECCE
Confidence 488999999 99999999999999999999999998778999988877 8899999999874
No 156
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.79 E-value=5.7e-09 Score=85.22 Aligned_cols=77 Identities=27% Similarity=0.444 Sum_probs=60.9
Q ss_pred eeeEEEEEEee-----CC-CCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEE
Q 016195 180 SGIGINLREVP-----DA-NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEV 252 (393)
Q Consensus 180 ~glGi~~~~~~-----~~-~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv 252 (393)
.++||.+.... +. .+...++|..|.++|||+++| |++||+|++|||+++.+.+..++..+++. .|+.+.|++
T Consensus 20 ~~lG~~i~~~~~~gg~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v 98 (108)
T 1q7x_A 20 NSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRN-TGQVVHLLL 98 (108)
T ss_dssp CSCCEEESSSSSSBCBCTTSSSCCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSHHHHHHHH-TTSEEEEEE
T ss_pred CCccEEEEEeccCCCccccCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEE
Confidence 57888886210 00 000137899999999999999 99999999999999998777788888875 589999999
Q ss_pred EeCCC
Q 016195 253 KHGNC 257 (393)
Q Consensus 253 ~r~~~ 257 (393)
.|++.
T Consensus 99 ~R~~~ 103 (108)
T 1q7x_A 99 EKGQS 103 (108)
T ss_dssp ECCCC
T ss_pred EeCCc
Confidence 99763
No 157
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=98.78 E-value=1.8e-08 Score=80.83 Aligned_cols=73 Identities=18% Similarity=0.333 Sum_probs=62.8
Q ss_pred eeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcC-CCCCeEEEEEEeCC
Q 016195 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQG-PSETFVTIEVKHGN 256 (393)
Q Consensus 180 ~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g-~~G~~V~Ltv~r~~ 256 (393)
.++|+.+... +.| ..+|.++.++|||++.| |+.||+|++|||+++.++++.++.++|+. +.|.+++|++.++.
T Consensus 16 ~~LG~tI~~~--g~g--~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~g~~~~L~lv~p~ 90 (95)
T 3gge_A 16 DSLGLTITDN--GVG--YAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKLIEPK 90 (95)
T ss_dssp SCCCEEEECS--SSS--CCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCTTCEEEEEEEEEC
T ss_pred CCceEEEEcC--CCC--cEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCCCCCEEEEEEECcc
Confidence 6789998632 234 47899999999999998 99999999999999999999999999975 56788999988765
No 158
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.76 E-value=4.9e-09 Score=86.12 Aligned_cols=79 Identities=23% Similarity=0.216 Sum_probs=63.6
Q ss_pred CceeeeEEEEEEeeCC-------CCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeE
Q 016195 177 YDMSGIGINLREVPDA-------NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFV 248 (393)
Q Consensus 177 ~~~~glGi~~~~~~~~-------~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V 248 (393)
....++||.+....+. .....++|..|.++|||+++| |++||+|++|||+++.+++..++..+++. .+..+
T Consensus 18 ~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~-~g~~v 96 (111)
T 1uju_A 18 APGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRS-VGDTL 96 (111)
T ss_dssp CTTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHHHSS-CSSEE
T ss_pred CCCCccCEEEECCccccccccccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeE
Confidence 3456889988643210 001137899999999999999 99999999999999998888999999986 67899
Q ss_pred EEEEEeCC
Q 016195 249 TIEVKHGN 256 (393)
Q Consensus 249 ~Ltv~r~~ 256 (393)
.|+|.|+.
T Consensus 97 ~l~v~r~~ 104 (111)
T 1uju_A 97 TVLVCDGF 104 (111)
T ss_dssp EECCCCCC
T ss_pred EEEEEECC
Confidence 99998865
No 159
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=98.76 E-value=2.8e-09 Score=84.92 Aligned_cols=65 Identities=12% Similarity=0.293 Sum_probs=54.5
Q ss_pred EEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCC-CCCeEEEEEEeCCCCceEEEEEEe
Q 016195 198 LKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGP-SETFVTIEVKHGNCGPIESIQVQR 267 (393)
Q Consensus 198 l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~-~G~~V~Ltv~r~~~~~~~~v~l~r 267 (393)
++|..|.++|||++ ||++||+|++|||+++.. ..++...++.. +|++++|++.|++ +..+++++.
T Consensus 3 v~V~~V~~~spA~~-GL~~GD~I~~InG~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g--~~~~~~v~~ 68 (91)
T 2kjp_A 3 IYASSVVENMPAKG-KIEVGDKIISADGKNYQS--AEKLIDYISSKKAGDKVTLKIEREE--KEKRVTLTL 68 (91)
T ss_dssp SSCCCCCCSSCCSS-CCCSSCEEEEETTBCCSS--HHHHHHHHSSCCSSCEECEEEESSS--CEECCCEEC
T ss_pred eEEEEECCCChHHH-cCCCCCEEEEECCEECCC--HHHHHHHHHcCCCCCEEEEEEEECC--EEEEEEEEE
Confidence 46788999999999 999999999999999987 46888888765 6999999999987 445555543
No 160
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}
Probab=98.76 E-value=4.2e-08 Score=81.33 Aligned_cols=72 Identities=21% Similarity=0.376 Sum_probs=60.5
Q ss_pred eeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcC-CCCCeEEEEEEeCCC
Q 016195 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQG-PSETFVTIEVKHGNC 257 (393)
Q Consensus 179 ~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g-~~G~~V~Ltv~r~~~ 257 (393)
..|+||.+...+ .| .+|..+++ |++.|||++||+|++|||+++.++++.++.++|+. +.|+.|+|+|.|++.
T Consensus 22 ~~G~GFsI~~~~--~g---~~V~~I~~--~~~~aGL~~GD~Il~VNG~~v~~~~h~evv~~lk~~~~G~~v~L~V~R~g~ 94 (113)
T 3soe_A 22 PKGFGFAIADSP--TG---QKVKMILD--SQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGP 94 (113)
T ss_dssp TTBSSEEEEEET--TE---EEEEEESC--GGGSTTCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTCEEEEEEEESSC
T ss_pred CCcccEEEeCCC--CC---cEEEEecC--hHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEECCc
Confidence 458999995332 23 45888887 68899999999999999999999999999999985 569999999999874
No 161
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.75 E-value=1.7e-08 Score=83.64 Aligned_cols=79 Identities=20% Similarity=0.314 Sum_probs=62.3
Q ss_pred ceeeeEEEEEEeeCC-------CCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEE
Q 016195 178 DMSGIGINLREVPDA-------NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVT 249 (393)
Q Consensus 178 ~~~glGi~~~~~~~~-------~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~ 249 (393)
...++||.+....+. .....++|..|.++|||+++| |++||+|++|||+++......++..+++. .|..+.
T Consensus 25 ~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~-~g~~v~ 103 (117)
T 2ehr_A 25 PNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKN-AGNPVV 103 (117)
T ss_dssp SSSCCCEEECCCCSCCCSSCCCSCCCSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCHHHHHHHHHT-SCSSEE
T ss_pred CCCccCEEEeCCcccccccccCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEE
Confidence 346788887532110 001148999999999999999 99999999999999999888888888875 588999
Q ss_pred EEEEeCCC
Q 016195 250 IEVKHGNC 257 (393)
Q Consensus 250 Ltv~r~~~ 257 (393)
|+|.|...
T Consensus 104 l~v~r~~~ 111 (117)
T 2ehr_A 104 FIVQSLSS 111 (117)
T ss_dssp EEECCBSC
T ss_pred EEEEECCC
Confidence 99988653
No 162
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=98.75 E-value=2.6e-08 Score=78.24 Aligned_cols=57 Identities=23% Similarity=0.264 Sum_probs=46.5
Q ss_pred EEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcC-CCCCeEEEEEEeCC
Q 016195 198 LKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQG-PSETFVTIEVKHGN 256 (393)
Q Consensus 198 l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g-~~G~~V~Ltv~r~~ 256 (393)
+.|..+.++|||++|||++||+|++|||+++..+ .++...+.. ..|+.+.|++.|++
T Consensus 21 ~~V~~~~~~s~A~~aGl~~GD~I~~ing~~v~~~--~d~~~~~~~~~~g~~v~l~v~R~g 78 (87)
T 2i6v_A 21 YRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDP--NVMNTLFQSMNEMTEMSLTVERDG 78 (87)
T ss_dssp EEEEECSCHHHHHHTTCCTTCEEEEETTEETTCH--HHHHHHHHTGGGCSEEEEEEEETT
T ss_pred EEEEeCCCCCHHHHCCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECC
Confidence 4566666777889999999999999999999884 566666654 36889999999987
No 163
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=98.75 E-value=2.4e-08 Score=90.07 Aligned_cols=82 Identities=26% Similarity=0.355 Sum_probs=66.2
Q ss_pred cCceeeeEEEEEEeeC--CCCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCC-CCeEEEE
Q 016195 176 RYDMSGIGINLREVPD--ANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPS-ETFVTIE 251 (393)
Q Consensus 176 ~~~~~glGi~~~~~~~--~~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~-G~~V~Lt 251 (393)
++...|+||.+....+ ..+...++|..|.++|||++|| |++||+|++|||+++.+.++.++..+++... |+.++|+
T Consensus 14 ~~~~~glG~~i~~~~~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~ 93 (196)
T 1p1d_A 14 ADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLE 93 (196)
T ss_dssp CBTTTBCCCEEEECSSCSSSCSCSEEEEECCTTSHHHHTSCCCSSCCEEEETTBCSTTSCHHHHHHHHHTCCSSSEEEEE
T ss_pred eCCCCccCEEEeCCcCCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEE
Confidence 3456789999875311 0012247899999999999999 9999999999999999877888888887655 8999999
Q ss_pred EEeCCC
Q 016195 252 VKHGNC 257 (393)
Q Consensus 252 v~r~~~ 257 (393)
+.|++.
T Consensus 94 v~R~~~ 99 (196)
T 1p1d_A 94 IEFDVA 99 (196)
T ss_dssp EEECSC
T ss_pred EEecCC
Confidence 999874
No 164
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=98.75 E-value=4.1e-08 Score=95.54 Aligned_cols=81 Identities=19% Similarity=0.326 Sum_probs=64.3
Q ss_pred eeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcC-CCCCeEEEEEEe-CC
Q 016195 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQG-PSETFVTIEVKH-GN 256 (393)
Q Consensus 179 ~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g-~~G~~V~Ltv~r-~~ 256 (393)
+..||+.+...+...| ++|..|.++|||++|||++||+|++|||+++..+ .++...+.. +.|++++|+|.| ++
T Consensus 228 ~~~lGi~~~~~~~~~g---~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~~g 302 (324)
T 1y8t_A 228 HASLGVQVTNDKDTLG---AKIVEVVAGGAAANAGVPKGVVVTKVDDRPINSA--DALVAAVRSKAPGATVALTFQDPSG 302 (324)
T ss_dssp CEECCEEEESCSSSSS---EEEEEECTTSTTTTTTCCTTCEEEEETTEECCSH--HHHHHHHHTSCTTCEEEEEEECSSC
T ss_pred ccccceEeeeccCCCc---eEEEEECCCChHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCC
Confidence 5678888865332234 7899999999999999999999999999999884 677777754 579999999999 76
Q ss_pred CCceEEEEEE
Q 016195 257 CGPIESIQVQ 266 (393)
Q Consensus 257 ~~~~~~v~l~ 266 (393)
+.++++++
T Consensus 303 --~~~~~~v~ 310 (324)
T 1y8t_A 303 --GSRTVQVT 310 (324)
T ss_dssp --CEEEEEEE
T ss_pred --CEEEEEEE
Confidence 34555554
No 165
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=98.74 E-value=2.9e-08 Score=81.60 Aligned_cols=65 Identities=26% Similarity=0.470 Sum_probs=54.9
Q ss_pred EEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCCCCceEEEEEEee
Q 016195 198 LKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNCGPIESIQVQRQ 268 (393)
Q Consensus 198 l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~~~~~~~v~l~r~ 268 (393)
++|..|.++|||+++||++||+|++|||+++.. ..++...+.. |+.+.|++.|++ ...+++++..
T Consensus 37 v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~--~~~~~~~l~~--~~~v~l~v~R~g--~~~~~~v~~~ 101 (113)
T 2pzd_A 37 VLIHKVILGSPAHRAGLRPGDVILAIGEQMVQN--AEDVYEAVRT--QSQLAVQIRRGR--ETLTLYVTPE 101 (113)
T ss_dssp EEEEEEBTTSHHHHHTCCTTCEEEEETTEECCS--HHHHHHHHHH--CSSEEEEEEETT--EEEEEEECCE
T ss_pred eEEEEeCCCChHHHcCCCCCCEEEEECCEECCC--HHHHHHHHhC--CCeEEEEEEECC--EEEEEEEEEe
Confidence 789999999999999999999999999999986 5777777764 688999999976 4556666543
No 166
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=98.74 E-value=1.2e-08 Score=81.63 Aligned_cols=65 Identities=14% Similarity=0.260 Sum_probs=54.6
Q ss_pred EEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCC-CCCeEEEEEEeCCCCceEEEEEEe
Q 016195 198 LKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGP-SETFVTIEVKHGNCGPIESIQVQR 267 (393)
Q Consensus 198 l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~-~G~~V~Ltv~r~~~~~~~~v~l~r 267 (393)
++|..|.++|||++ ||++||+|++|||+++.. ..++...++.. .|+.+.|++.|++ +..+++++.
T Consensus 7 v~V~~V~~~spA~~-GL~~GD~Il~InG~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g--~~~~~~v~~ 72 (94)
T 2kl1_A 7 VYVMSVLPNMPAAG-RLEAGDRIAAIDGQPINT--SEQIVSYVREKQAGDRVRVTFIRDR--KQHEAELVL 72 (94)
T ss_dssp EECCCCCTTSTTBT-TBCTTCEEEEETTBCCCC--HHHHHHHHHHSCTTCCEEEEEEETT--EEEEEEECC
T ss_pred EEEEEECCCChHHh-CCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEEEEECC--EEEEEEEEE
Confidence 78899999999999 999999999999999987 46777777654 7899999999987 455565543
No 167
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Probab=98.73 E-value=1.3e-08 Score=82.35 Aligned_cols=71 Identities=20% Similarity=0.280 Sum_probs=58.9
Q ss_pred eeEEEEEEee---------CCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEE
Q 016195 181 GIGINLREVP---------DANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIE 251 (393)
Q Consensus 181 glGi~~~~~~---------~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Lt 251 (393)
++||.+.... ... .++|..|.++|||++ ||++||+|++|||+++......++...++ ..|+.++|+
T Consensus 22 ~lG~~i~gg~~~~~~p~~~~~~---gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~~~~~~~~~~-~~g~~v~l~ 96 (103)
T 1n7t_A 22 ELGFSISGGVGGRGNPFRPDDD---GIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLK-TFQNTVELI 96 (103)
T ss_dssp CCCBEEEECTTSSBCSSCSSCC---SEECCCBSSSSTTSS-SCCTTCEEEEETTEECSSCCHHHHHHHHH-HCCSEEEEE
T ss_pred CccEEEEcccCCCCCccccCCC---CEEEEEECCCCchHH-CCCCCCEEEEECCEECCCCCHHHHHHHhh-cCCCeEEEE
Confidence 7888886421 112 388999999999999 99999999999999999988888888776 568899999
Q ss_pred EEeCC
Q 016195 252 VKHGN 256 (393)
Q Consensus 252 v~r~~ 256 (393)
+.|+.
T Consensus 97 v~R~~ 101 (103)
T 1n7t_A 97 IVREV 101 (103)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 98864
No 168
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=98.73 E-value=4.3e-08 Score=88.00 Aligned_cols=68 Identities=19% Similarity=0.249 Sum_probs=55.7
Q ss_pred EEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEe---CCCCceEEEEEE
Q 016195 197 TLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH---GNCGPIESIQVQ 266 (393)
Q Consensus 197 ~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r---~~~~~~~~v~l~ 266 (393)
.++|..|.++|||++ ||++||+|++|||+++......++...++.. +..|.|+|.| ++.....++++.
T Consensus 25 g~~V~~v~~~spA~~-gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~r~~~~G~~~~~~v~~~ 95 (195)
T 2qbw_A 25 GIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKTF-QNTVELIIVREVGNGAKQEIRVRVE 95 (195)
T ss_dssp SEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCCHHHHHHHHHHC-CSEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CEEEEEECCCChHHh-CCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEEcCCCCCCceeEeEee
Confidence 489999999999999 9999999999999999998888888888754 4599999999 553333444443
No 169
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A
Probab=98.73 E-value=1.6e-08 Score=83.32 Aligned_cols=74 Identities=20% Similarity=0.318 Sum_probs=59.5
Q ss_pred ceeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeC
Q 016195 178 DMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (393)
Q Consensus 178 ~~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~ 255 (393)
...++|+.+....+... .++|..|.++|||+++||++||+|++|||+++..+...++...++. +..+.|++.|+
T Consensus 25 ~~~~lG~~l~~~~~~~~--gv~V~~V~~~s~A~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~~~--~~~v~l~v~r~ 98 (114)
T 1x5n_A 25 GSRGLGCSISSGPIQKP--GIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKS--SRSLTISIVAA 98 (114)
T ss_dssp SSCCCCEEEEECCSSSC--SEEEEEECTTSTTTTTTCCTTCEEEEETTEETTSCCTTHHHHHHHH--CSSEEEEECSS
T ss_pred CCCceeEEEeecCCCCC--CEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhc--CCeEEEEEEcC
Confidence 34678999875322121 3889999999999999999999999999999999876667777753 35789999887
No 170
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=98.73 E-value=4.1e-08 Score=88.68 Aligned_cols=76 Identities=26% Similarity=0.312 Sum_probs=62.4
Q ss_pred ceeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhc-CCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 178 DMSGIGINLREVPDANGVVTLKVLGLILDGPAHSA-GVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 178 ~~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~A-GL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
...++|+.+....+... .++|..|.++|||++| ||++||+|++|||+++..++..++..+++. .|+++.|++.|++
T Consensus 17 ~~~~lG~~i~~~~~~~~--~~~V~~v~~~spA~~aggl~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~ 93 (200)
T 2qt5_A 17 EGTTLGLTVSGGIDKDG--KPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKN-VGERVVLEVEYEL 93 (200)
T ss_dssp TTCCCCEEEECCTTSSS--CSEEEEECTTSHHHHTTSCCTTCEEEEETTEECTTSCHHHHHHHHHT-CCSEEEEEEEEEC
T ss_pred CCCCCCEEEecccCCCC--CeEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEeccC
Confidence 45678998864322122 3789999999999999 999999999999999999988888888864 5789999999865
No 171
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.72 E-value=4.4e-09 Score=86.91 Aligned_cols=72 Identities=26% Similarity=0.291 Sum_probs=59.2
Q ss_pred eeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 179 ~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
..++||.+... . .++|..|.++|||++|||++||+|++|||+++..++++++..+++...++.+.|+|.|..
T Consensus 25 ~~~~G~~l~~~---~---~v~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~d~~~~i~~~~~~~v~l~V~~~~ 96 (111)
T 1vae_A 25 EGDLGFTLRGN---T---PVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVSLL 96 (111)
T ss_dssp SSCCSCCEESS---S---SCEECCCCTTSSHHHHHCCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEEEECEE
T ss_pred CCcccEEEeCC---C---CEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEEEEecC
Confidence 35678776421 2 367899999999999999999999999999999777899999998777778888887643
No 172
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=98.71 E-value=1.7e-08 Score=101.11 Aligned_cols=73 Identities=29% Similarity=0.408 Sum_probs=63.9
Q ss_pred eeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcC-CCCCeEEEEEEeCC
Q 016195 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQG-PSETFVTIEVKHGN 256 (393)
Q Consensus 180 ~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g-~~G~~V~Ltv~r~~ 256 (393)
.++|+.+.... ++ .++|..|.+||||++|||++||+|++|||+++.+++.+++..++++ ..|+.++|++.|++
T Consensus 19 ~~lG~~i~gg~--~~--gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~g~~v~l~v~r~~ 92 (391)
T 3tsz_A 19 DSVGLRLAGGN--DV--GIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK 92 (391)
T ss_dssp SSCCEEEEEET--TT--EEEEEEECTTCHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEECH
T ss_pred CceeEEEEecC--CC--CEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhhcCCCeEEEEEeeCC
Confidence 36899886532 22 4899999999999999999999999999999999889999999986 78999999999875
No 173
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.70 E-value=8.1e-09 Score=84.75 Aligned_cols=75 Identities=29% Similarity=0.472 Sum_probs=61.4
Q ss_pred ceeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 178 DMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 178 ~~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
...|+|+.+....+.. .++|..|.++|||+++| |++||+|++|||+++..+...++..+++ ..+..+.|++.|.+
T Consensus 24 ~~~glG~~l~~~~~~~---gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~~~-~~~~~v~l~v~r~~ 99 (113)
T 1um7_A 24 GSTGLGFNIVGGEDGE---GIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALK-RAGQSVTIVAQYRP 99 (113)
T ss_dssp CSSCSSBCCBCCSTTC---CCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCCHHHHHHHHH-SCCSEEEEEEECCH
T ss_pred CCCcccEEEEeccCCC---CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH-hCCCcEEEEEEECc
Confidence 3467888876433222 37899999999999999 9999999999999999998788887777 36788999998865
No 174
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=98.68 E-value=4.4e-08 Score=89.59 Aligned_cols=70 Identities=20% Similarity=0.297 Sum_probs=57.2
Q ss_pred EEEEEEEcCCChhhhcCCCCC-CEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCCCCceEEEEEEe
Q 016195 197 TLKVLGLILDGPAHSAGVRQG-DEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNCGPIESIQVQR 267 (393)
Q Consensus 197 ~l~V~~V~~gsPA~~AGL~~G-D~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~~~~~~~v~l~r 267 (393)
.++|..|.++|||++|||++| |+|++|||+++..+.. ....+++...|++++|++.|.+.....++++++
T Consensus 17 G~~V~~V~~~SpA~~AGL~~G~D~I~~ing~~v~~~~~-~~~~~~~~~~g~~v~l~v~R~~~~~~~~v~l~p 87 (209)
T 3rle_A 17 GYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDND-TLKDLLKANVEKPVKMLIYSSKTLELRETSVTP 87 (209)
T ss_dssp EEEEEEECTTSHHHHTTCCTTTEEEEEETTEECCSSSS-HHHHHHHHTTTSCEEEEEEETTTCCEEEEEECC
T ss_pred EEEEEEECCCCHHHHCCCCcCCeEEEEECCEECcCHHH-HHHHHHhcCCCCEEEEEEEecCCceEEEEEEcc
Confidence 488999999999999999999 9999999999998742 122344456789999999998766777777753
No 175
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=98.67 E-value=2.1e-08 Score=95.13 Aligned_cols=78 Identities=24% Similarity=0.316 Sum_probs=64.8
Q ss_pred CceeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhh-cCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeC
Q 016195 177 YDMSGIGINLREVPDANGVVTLKVLGLILDGPAHS-AGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (393)
Q Consensus 177 ~~~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~-AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~ 255 (393)
....|+||.+....+ .+ ..++|..|.++|||++ +||++||+|++|||+++.+++..++..++++. |..|+|+|.|.
T Consensus 86 ~~~~glGf~I~gg~d-~~-~gi~V~~V~~gspA~~~aGL~~GD~Il~VNG~~v~~~t~~e~v~~l~~~-g~~V~L~V~R~ 162 (263)
T 1z87_A 86 ADAGGLGISIKGGRE-NK-MPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKT-GKEVVLEVKYM 162 (263)
T ss_dssp TTTCCCCCEEEEETT-TT-EEEEEEECCTTSHHHHCTTCCSSCEEEEESSCBCTTSCHHHHHHHHHHC-CSCCCEEEECC
T ss_pred CCCCCEeEEEeeccC-CC-CCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCcCHHHHHHHHhcC-CCeEEEEEEeC
Confidence 345789999865322 11 2589999999999999 79999999999999999999999999999864 77899999996
Q ss_pred CC
Q 016195 256 NC 257 (393)
Q Consensus 256 ~~ 257 (393)
+.
T Consensus 163 ~~ 164 (263)
T 1z87_A 163 KE 164 (263)
T ss_dssp SS
T ss_pred cc
Confidence 63
No 176
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=98.67 E-value=9.7e-08 Score=92.75 Aligned_cols=66 Identities=21% Similarity=0.319 Sum_probs=56.8
Q ss_pred EEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcC-CCCCeEEEEEEeCCCCceEEEEEE
Q 016195 197 TLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQG-PSETFVTIEVKHGNCGPIESIQVQ 266 (393)
Q Consensus 197 ~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g-~~G~~V~Ltv~r~~~~~~~~v~l~ 266 (393)
.++|..|.++|||++|||++||+|++|||+++.. ..++...++. ++|++++|++.|++ +..+++++
T Consensus 245 g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g--~~~~~~v~ 311 (318)
T 1te0_A 245 GIVVNEVSPDGPAANAGIQVNDLIISVDNKPAIS--ALETMDQVAEIRPGSVIPVVVMRDD--KQLTLQVT 311 (318)
T ss_dssp CEEEEEECTTSTTTTTCCCTTCCEEEETTEECCC--HHHHHHHHHTSCTTCEEEEEEESSS--CEEEEEEE
T ss_pred cEEEEEeCCCChHHHCCCCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECC--EEEEEEEE
Confidence 3789999999999999999999999999999987 4678888876 68999999999987 45555554
No 177
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}
Probab=98.67 E-value=6e-08 Score=79.63 Aligned_cols=64 Identities=22% Similarity=0.382 Sum_probs=53.5
Q ss_pred EEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCCCCceEEEEEEe
Q 016195 198 LKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNCGPIESIQVQR 267 (393)
Q Consensus 198 l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~~~~~~~v~l~r 267 (393)
++|..|.++|||+++||++||+|++|||+++.. ..++...+. .|+.+.|++.|++ ...+++++.
T Consensus 37 v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~--~~~~~~~l~--~g~~v~l~v~R~g--~~~~~~v~~ 100 (112)
T 2p3w_A 37 IYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLVD--SSELQEAVL--TESPLLLEVRRGN--DDLLFSIAP 100 (112)
T ss_dssp EEEEEECTTSHHHHHTCCTTCEEEEETTEECCS--HHHHHHHHH--HCSSEEEEEEETT--EEEEEEECC
T ss_pred eEEEEECCCChHHHCCCCCCCEEEEECCEECCC--HHHHHHHHh--CCCeEEEEEEECC--EEEEEEEEE
Confidence 789999999999999999999999999999987 467777773 5789999999976 445555543
No 178
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=98.64 E-value=8.6e-08 Score=78.02 Aligned_cols=57 Identities=23% Similarity=0.287 Sum_probs=44.9
Q ss_pred EEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcC-CCCCeEEEEEEeCC
Q 016195 198 LKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQG-PSETFVTIEVKHGN 256 (393)
Q Consensus 198 l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g-~~G~~V~Ltv~r~~ 256 (393)
+.|....++|||+++||++||+|++|||+++..+. ++...+.. ..|+.+.|++.|++
T Consensus 39 ~~V~~~~pas~A~~aGl~~GDvI~~ing~~v~~~~--d~~~~~~~~~~g~~v~l~v~R~g 96 (105)
T 2i4s_A 39 YRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPN--VMNTLFQSMNEMTEMSLTVERDG 96 (105)
T ss_dssp EEEEECSCTHHHHHHTCCTTCEEEEETTEETTSTT--HHHHHHHHHTTCSEEEEEEEETT
T ss_pred EEEecCCCCCHHHHcCCCCCCEEEEECCEECCCHH--HHHHHHHhcCCCCeEEEEEEECC
Confidence 34555666677799999999999999999999874 44444442 46889999999987
No 179
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=98.63 E-value=9.9e-08 Score=93.94 Aligned_cols=65 Identities=20% Similarity=0.236 Sum_probs=55.9
Q ss_pred EEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcC-CCCCeEEEEEEeCCCCceEEEEEE
Q 016195 198 LKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQG-PSETFVTIEVKHGNCGPIESIQVQ 266 (393)
Q Consensus 198 l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g-~~G~~V~Ltv~r~~~~~~~~v~l~ 266 (393)
++|..|.++|||++|||++||+|++|||+++.. ..++...+.. ++|++++|+|.|++ +.++++++
T Consensus 265 ~~V~~V~~~spA~~aGL~~GDvI~~ing~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g--~~~~~~v~ 330 (345)
T 3stj_A 265 AFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNS--FAELRSRIATTEPGTKVKLGLLRNG--KPLEVEVT 330 (345)
T ss_dssp EEEEEECTTSHHHHHTCCTTCEECEETTEECSC--HHHHHHHHHTSCTTCEEEEEEEETT--EEEEEEEE
T ss_pred EEEEEeccCChHHHcCCCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECC--EEEEEEEE
Confidence 789999999999999999999999999999987 5678777765 58999999999987 44555554
No 180
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=98.63 E-value=7e-09 Score=95.70 Aligned_cols=90 Identities=24% Similarity=0.278 Sum_probs=68.0
Q ss_pred CceeeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeE-EEEEEeC
Q 016195 177 YDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFV-TIEVKHG 255 (393)
Q Consensus 177 ~~~~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V-~Ltv~r~ 255 (393)
....|+||.+....+..| ++|..|.++|||+++||++||+|++|||+++.+++..++..++++. |..+ .|+|.|+
T Consensus 17 k~~~glG~~l~~~~~~~g---v~V~~V~~gSpA~~aGL~~GD~Il~VNG~~V~~~s~~dl~~~l~~~-g~~v~~l~V~R~ 92 (216)
T 2krg_A 17 KGPSGYGFNLHSDKSKPG---QFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAG-GDETKLLVVDRE 92 (216)
T ss_dssp CCSSSSCEEECCCSSSCS---CBEEEECTTSHHHHHTCCTTCBCCEETTEECTTCCTHHHHHHHHHH-CSEEEEEECCHH
T ss_pred eCCCCceEEEEecCCCCC---eEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhc-CCeEEEEEEEEC
Confidence 345689999865432223 7899999999999999999999999999999977778888888755 7888 8999887
Q ss_pred CCCceEEEEEEeecc
Q 016195 256 NCGPIESIQVQRQLV 270 (393)
Q Consensus 256 ~~~~~~~v~l~r~~~ 270 (393)
+.....++++++..+
T Consensus 93 g~~~~~~v~v~p~~~ 107 (216)
T 2krg_A 93 TDEFFKKCRVIPSQE 107 (216)
T ss_dssp HHHHHHHHTCCCCGG
T ss_pred CEEEEEEEEEEEeee
Confidence 632211445554433
No 181
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=98.61 E-value=1e-07 Score=86.25 Aligned_cols=72 Identities=21% Similarity=0.297 Sum_probs=60.7
Q ss_pred eeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCCC
Q 016195 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (393)
Q Consensus 180 ~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~~ 257 (393)
.++|+.+... ..| ++|..|.++|||+++| |++||+|++|||+++..++..++..+++. .+..+.|+|.|...
T Consensus 125 ~~lG~~~~~~--~~g---v~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~-~~~~v~L~V~R~~~ 197 (206)
T 3r0h_A 125 KELGLSLSPN--EIG---CTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKG-ANGKVSMEVTRPKP 197 (206)
T ss_dssp CCCCEEEEEC--SSC---EEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHT-CCSEEEEEEEEECC
T ss_pred CccCeEEEcC--Cce---EEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCC
Confidence 5688887642 233 8899999999999999 99999999999999999888888888875 56789999998653
No 182
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=98.60 E-value=1.6e-07 Score=83.71 Aligned_cols=76 Identities=25% Similarity=0.384 Sum_probs=61.1
Q ss_pred eeEEEEEEeeCCC---CeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 181 GIGINLREVPDAN---GVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 181 glGi~~~~~~~~~---G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
++|+.+....... +...++|..|.++|||+++| |++||+|++|||+++..+++.++...++. .+..+.|+|.|++
T Consensus 112 ~lG~~~~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~~ 190 (196)
T 3gsl_A 112 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKN-TYDVVYLKVAKPS 190 (196)
T ss_dssp BSCEEEEESBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCBHHHHHHHHHS-CCEEEEEEEEEES
T ss_pred CceEEEEccCCCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCCcCCCCCHHHHHHHHHc-CCCeEEEEEeCCC
Confidence 6788775422100 01137899999999999999 99999999999999999888899998874 5789999999977
Q ss_pred C
Q 016195 257 C 257 (393)
Q Consensus 257 ~ 257 (393)
.
T Consensus 191 ~ 191 (196)
T 3gsl_A 191 N 191 (196)
T ss_dssp C
T ss_pred C
Confidence 4
No 183
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=2.3e-08 Score=80.11 Aligned_cols=70 Identities=23% Similarity=0.333 Sum_probs=58.5
Q ss_pred eeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCCC
Q 016195 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (393)
Q Consensus 180 ~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~~ 257 (393)
.++||.+.. .. .++|..|.++|||+ +||++||+|++|||+++......++..+++. .|+.+.|+|.|++.
T Consensus 21 ~~~G~~l~~---~~---~~~V~~V~~~spA~-agL~~GD~Il~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~~ 90 (96)
T 2edv_A 21 QDYGFHISE---SL---PLTVVAVTAGGSAH-GKLFPGDQILQMNNEPAEDLSWERAVDILRE-AEDSLSITVVRCTS 90 (96)
T ss_dssp CSCSBCCCS---SS---SCBCCCBCSSSSST-TTSCTTCBEEEESSCBSTTCCHHHHHHHHHH-CSSCEEEEEEECCC
T ss_pred CcccEEEec---CC---CeEEEEECCCCchh-hCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECCC
Confidence 467777642 12 37899999999996 9999999999999999999888888888875 68899999999763
No 184
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=98.52 E-value=1.8e-07 Score=95.56 Aligned_cols=73 Identities=30% Similarity=0.419 Sum_probs=62.9
Q ss_pred eeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcC-CCCCeEEEEEEeCC
Q 016195 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQG-PSETFVTIEVKHGN 256 (393)
Q Consensus 180 ~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g-~~G~~V~Ltv~r~~ 256 (393)
.++|+.+....+ . .++|..|.+||||+++||++||+|++|||+++.+++.+++..+|++ +.|+.|+|+|.|++
T Consensus 11 ~~lG~~i~gg~~--~--Gi~V~~V~~gspA~~aGL~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~g~~v~L~V~r~g 84 (468)
T 3shw_A 11 DSVGLRLAGGND--V--GIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK 84 (468)
T ss_dssp SSCCEEEEEETT--T--EEEEEEECSSSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEECH
T ss_pred CccceEEEccCc--C--CEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECC
Confidence 567887754321 2 4899999999999999999999999999999999989999999876 48899999999965
No 185
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=98.51 E-value=2.2e-07 Score=84.89 Aligned_cols=85 Identities=16% Similarity=0.232 Sum_probs=62.7
Q ss_pred eeEEEEEEeeCCC-CeeEEEEEEEcCCChhhhcCCCC-CCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCCCC
Q 016195 181 GIGINLREVPDAN-GVVTLKVLGLILDGPAHSAGVRQ-GDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNCG 258 (393)
Q Consensus 181 glGi~~~~~~~~~-G~~~l~V~~V~~gsPA~~AGL~~-GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~~~ 258 (393)
.+|+.+....... ....++|..|.++|||++|||++ ||+|++|||+ +..+ +++...++..+|+++.|+|.|.+..
T Consensus 96 ~lGi~~~~~~~~~~~~~Gv~V~~V~~~spA~~aGl~~~GD~I~~ing~-v~~~--~~l~~~l~~~~g~~v~l~v~r~~~~ 172 (209)
T 3rle_A 96 LLGVSIRFCSFDGANENVWHVLEVESNSPAALAGLRPHSDYIIGADTV-MNES--EDLFSLIETHEAKPLKLYVYNTDTD 172 (209)
T ss_dssp SSCEEEEEEECTTGGGSCEEEEEECTTSHHHHHTCCTTTEEEEEESSC-CCSS--SCHHHHHHHTTTSCEEEEEEETTTT
T ss_pred ccceEEeecChhHccccceEEEEeCCCChHHHCCCCCCCCEEEECCCE-eCCH--HHHHHHHHhCCCCeEEEEEEECCce
Confidence 4666665432110 00137899999999999999999 9999999998 7664 5666677656889999999997754
Q ss_pred ceEEEEEEee
Q 016195 259 PIESIQVQRQ 268 (393)
Q Consensus 259 ~~~~v~l~r~ 268 (393)
..+++++++.
T Consensus 173 ~~~~v~l~p~ 182 (209)
T 3rle_A 173 NCREVIITPN 182 (209)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEEec
Confidence 5677777653
No 186
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=98.50 E-value=2.2e-07 Score=99.98 Aligned_cols=88 Identities=24% Similarity=0.328 Sum_probs=68.4
Q ss_pred eeeeEEEEEEeeCC---CCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEe
Q 016195 179 MSGIGINLREVPDA---NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH 254 (393)
Q Consensus 179 ~~glGi~~~~~~~~---~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r 254 (393)
..|+||.+....+. .+...++|..|.+||||+++| |+.||+|++|||+++.+++..++..++++ .|+.|.|+|.|
T Consensus 69 ~~glGf~i~gg~~~~~~~~~~g~~V~~v~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~R 147 (721)
T 2xkx_A 69 NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKE-AGSIVRLYVMR 147 (721)
T ss_pred CCCCCEEEeCCcCCcccCCCCCeEEEEeCCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHhhc-cccccceEEEe
Confidence 36899988632110 011248999999999999999 99999999999999999998888888875 57899999998
Q ss_pred CCCC--ceEEEEEEe
Q 016195 255 GNCG--PIESIQVQR 267 (393)
Q Consensus 255 ~~~~--~~~~v~l~r 267 (393)
.+.. ...++++.+
T Consensus 148 ~~~~~~~~~~v~l~k 162 (721)
T 2xkx_A 148 RKPPAEKVMEIKLIK 162 (721)
T ss_pred cccccccceeeeeee
Confidence 7642 235666654
No 187
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=98.46 E-value=2.1e-07 Score=83.81 Aligned_cols=76 Identities=20% Similarity=0.339 Sum_probs=60.8
Q ss_pred eeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 180 ~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
.++|+.+...........++|..|.++|||+++| |++||+|++|||+++...+.+++.++++.. +..+.|+|.|++
T Consensus 119 ~~lG~~~~~~~~~~~~~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~R~~ 195 (196)
T 1p1d_A 119 VELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQC-EDLVKLKIRKDE 195 (196)
T ss_dssp CCCCCEEECSCSSSTTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHC-TTCEEEEEECCC
T ss_pred CCcCEEEECCCCCCCCCCEEEEEECCCCcHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCEEEEEEEeCC
Confidence 4578777542110000137899999999999999 999999999999999998788999988765 899999999875
No 188
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=98.44 E-value=4e-07 Score=82.08 Aligned_cols=76 Identities=22% Similarity=0.368 Sum_probs=61.7
Q ss_pred eeeEEEEEEeeC--CCCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 180 SGIGINLREVPD--ANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 180 ~glGi~~~~~~~--~~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
.++|+.+..... ..+...++|..|.++|||+++| |++||+|++|||+++.+++.+++..+++. .+..+.|++.|++
T Consensus 117 ~~lG~~l~~g~~~~~~~~~g~~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~~ 195 (200)
T 2qt5_A 117 NTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQ-CGQEATLLIEYDV 195 (200)
T ss_dssp TBCSEEEEEECCSSTTTCEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT-TCSEEEEEEEEEE
T ss_pred CCeEEEEECCCCCCccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECC
Confidence 346777653211 0112358999999999999999 99999999999999998888999999987 8899999999875
No 189
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=98.44 E-value=8.2e-07 Score=90.42 Aligned_cols=65 Identities=20% Similarity=0.240 Sum_probs=55.1
Q ss_pred EEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcC-CCCCeEEEEEEeCCCCceEEEEEE
Q 016195 198 LKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQG-PSETFVTIEVKHGNCGPIESIQVQ 266 (393)
Q Consensus 198 l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g-~~G~~V~Ltv~r~~~~~~~~v~l~ 266 (393)
++|..|.++|||++|||++||+|++|||+++..+ .++...+.. ..|++++|+|.|++ +..+++++
T Consensus 284 ~~V~~V~~~spA~~aGL~~GDvI~~vnG~~v~~~--~~l~~~l~~~~~g~~v~l~V~R~g--~~~~~~v~ 349 (451)
T 3pv2_A 284 ALVSQVNPNSPAELAGLKAGDIITQINDTKITQA--TQVKTTISLLRVGSTVKIIVERDN--KPLTLSAV 349 (451)
T ss_dssp EEEEEECTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHHHTSCTTCEEEEEEEETT--EEEEEEEE
T ss_pred EEEEecCCCChHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECC--EEEEEEEE
Confidence 7899999999999999999999999999999884 666666653 67899999999987 44555554
No 190
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=98.42 E-value=4.5e-07 Score=89.19 Aligned_cols=65 Identities=34% Similarity=0.452 Sum_probs=55.5
Q ss_pred EEEEEEcCCChhhhcCCCC-----------CCEEEEECCEEcCCCCHHHHHHHhc-CCCCCeEEEEEEeCCCCceEEEEE
Q 016195 198 LKVLGLILDGPAHSAGVRQ-----------GDEVLAVNGVDVRGKSAFEVSSLLQ-GPSETFVTIEVKHGNCGPIESIQV 265 (393)
Q Consensus 198 l~V~~V~~gsPA~~AGL~~-----------GD~IlsVnG~~v~~~~~~~v~~~L~-g~~G~~V~Ltv~r~~~~~~~~v~l 265 (393)
++|..|.++|||++|||++ ||+|++|||+++..+ .++...|. .+.|++++|+|.|+++ ..++++
T Consensus 253 v~V~~V~~~spA~~AGl~~~~~~~~~~l~~GDvI~~ing~~v~~~--~dl~~~l~~~~~g~~v~l~v~R~g~--~~~~~v 328 (348)
T 3qo6_A 253 VLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVSNG--SDLYRILDQCKVGDEVTVEVLRGDH--KEKISV 328 (348)
T ss_dssp EEEEECCSSSHHHHHTCCCCEECSSSCEECCCEECEETTBCCSSS--HHHHHHHTTCCTTCEEEEEEECSSS--EEEEEE
T ss_pred EEEEEecCCChHHHcCCccccccccCCCCCCCEEEEECCEEeCCH--HHHHHHHHhCCCcCEEEEEEEECCE--EEEEEE
Confidence 7899999999999999999 999999999999986 67777774 4579999999999874 455555
Q ss_pred E
Q 016195 266 Q 266 (393)
Q Consensus 266 ~ 266 (393)
+
T Consensus 329 ~ 329 (348)
T 3qo6_A 329 T 329 (348)
T ss_dssp E
T ss_pred E
Confidence 4
No 191
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Probab=98.41 E-value=6.4e-07 Score=75.42 Aligned_cols=55 Identities=15% Similarity=0.229 Sum_probs=48.8
Q ss_pred EEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhc-CCCCCeEEEEEEeCC
Q 016195 198 LKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQ-GPSETFVTIEVKHGN 256 (393)
Q Consensus 198 l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~-g~~G~~V~Ltv~r~~ 256 (393)
++|..|.++|||+++ |++||+|++|||+++..+ .++...+. ...|+.+.|++ |++
T Consensus 27 v~V~~V~~~spA~~a-L~~GD~Il~InG~~v~~~--~dl~~~l~~~~~g~~v~l~V-R~g 82 (125)
T 2hga_A 27 VQIDSVVPGSPASKV-LTPGLVIESINGMPTSNL--TTYSAALKTISVGEVINITT-DQG 82 (125)
T ss_dssp EEEEEECSSSGGGGT-SCTTCEEEEETTEECSSH--HHHHHHHTTCCTTCEEEEEE-TTE
T ss_pred eEEEEECCCChHHHh-cCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEE-ECC
Confidence 789999999999999 999999999999999874 67777776 36789999999 876
No 192
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=98.41 E-value=8.5e-07 Score=86.38 Aligned_cols=63 Identities=27% Similarity=0.481 Sum_probs=54.5
Q ss_pred EEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCCCCceEEEEEE
Q 016195 198 LKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNCGPIESIQVQ 266 (393)
Q Consensus 198 l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~~~~~~~v~l~ 266 (393)
++|..|.++|||++|||++||+|++|||+++.. ..++...++. ++++.|++.|++ +..+++++
T Consensus 258 v~V~~V~~~spA~~aGl~~GDvI~~ing~~v~~--~~~l~~~l~~--~~~v~l~v~R~g--~~~~~~v~ 320 (325)
T 1lcy_A 258 VLIHKVILGSPAHRAGLRPGDVILAIGEQMVQN--AEDVYEAVRT--QSQLAVQIRRGR--ETLTLYVT 320 (325)
T ss_dssp EEEEEECTTSHHHHHTCCTTCEEEEETTEECCS--HHHHHHHHTT--CSSEEEEEEETT--EEEEEEEC
T ss_pred eEEEEeCcCChHHHCCCCCCCEEEEECCEEcCC--HHHHHHHHhC--CCeEEEEEEECC--EEEEEEEE
Confidence 789999999999999999999999999999987 5788888864 689999999987 45555554
No 193
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=98.24 E-value=2.4e-06 Score=86.54 Aligned_cols=66 Identities=20% Similarity=0.211 Sum_probs=54.4
Q ss_pred EEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhc-CCCCCeEEEEEEeCCCCceEEEEEE
Q 016195 197 TLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQ-GPSETFVTIEVKHGNCGPIESIQVQ 266 (393)
Q Consensus 197 ~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~-g~~G~~V~Ltv~r~~~~~~~~v~l~ 266 (393)
.++|..|.++|||++|||++||+|++|||+++..+ .++...+. ...|++++|++.|+++ ..+++++
T Consensus 264 G~~V~~V~~~spA~~aGL~~GD~I~~vnG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~--~~~~~v~ 330 (436)
T 4a8c_A 264 GAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSF--AELRSRIATTEPGTKVKLGLLRNGK--PLEVEVT 330 (436)
T ss_pred ceEEEEECCCChHHHCCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCE--EEEEEEE
Confidence 37899999999999999999999999999999985 56666664 3578999999999874 4445444
No 194
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=98.16 E-value=5.6e-06 Score=84.28 Aligned_cols=57 Identities=21% Similarity=0.358 Sum_probs=51.8
Q ss_pred EEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 197 TLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 197 ~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
.++|..|.++|||+++||++||+|++|||+++.. .+++.+.++. .++.+.|+|.|++
T Consensus 387 Gv~V~~V~~gspA~~aGL~~GD~I~~Vng~~v~~--~~~~~~~l~~-~~~~v~l~v~R~g 443 (451)
T 3pv2_A 387 GVQVVGASENSAGWRAGIRPGDIIISANKKPVTD--VKSLQTIAQE-KKKELLVQVLRGP 443 (451)
T ss_dssp EEEEEEECTTSHHHHHTCCTTCEEEEETTEECCS--HHHHHHHTTS-SCSCEEEEEEETT
T ss_pred ceEEEEECCCCHHHHcCCCCCCEEEEECCEECCC--HHHHHHHHhc-CCCeEEEEEEECC
Confidence 4789999999999999999999999999999987 5788888876 6789999999987
No 195
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=98.14 E-value=6.9e-06 Score=83.20 Aligned_cols=65 Identities=20% Similarity=0.379 Sum_probs=54.2
Q ss_pred EEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCCCCceEEEEEE
Q 016195 197 TLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNCGPIESIQVQ 266 (393)
Q Consensus 197 ~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~~~~~~~v~l~ 266 (393)
.++|..|.++|||+++||++||+|++|||+++.. .+++.+.++... ..+.|+|.|++ ....+++.
T Consensus 364 gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~--~~~~~~~l~~~~-~~v~l~v~R~g--~~~~~~~~ 428 (436)
T 4a8c_A 364 GIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNS--IAEMRKVLAAKP-AIIALQIVRGN--ESIYLLMR 428 (436)
T ss_pred CEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCC--HHHHHHHHHhCC-CeEEEEEEECC--EEEEEEEE
Confidence 3789999999999999999999999999999987 478888887644 48999999987 34444443
No 196
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=98.11 E-value=6e-06 Score=88.75 Aligned_cols=73 Identities=32% Similarity=0.501 Sum_probs=60.8
Q ss_pred eeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 180 ~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AG-L~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
.++|+.+....+.. .++|..|.+||||+++| |++||+|++|||+++.+.+.+++..+|+. .+..|.|+|.|..
T Consensus 318 ~~lG~~i~~~~~~~---gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~e~~~~l~~-~~~~v~L~v~r~~ 391 (721)
T 2xkx_A 318 TGLGFNIVGGEDGE---GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN-AGQTVTIIAQYKP 391 (721)
T ss_pred CCccEEEeccCCCC---CeEEEEeCCCChHHhcCCCccCCEEEEECCEECCCCCHHHHHHHHHh-cCCeEEEEEEeCc
Confidence 46888875332222 48999999999999999 99999999999999999888999999975 4678999998764
No 197
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=98.08 E-value=4.5e-07 Score=88.55 Aligned_cols=64 Identities=27% Similarity=0.445 Sum_probs=0.0
Q ss_pred EEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCCCCceEEEEEEe
Q 016195 198 LKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNCGPIESIQVQR 267 (393)
Q Consensus 198 l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~~~~~~~v~l~r 267 (393)
++|..|.++|||++|||++||+|++|||+++..+ .++...++. |++++|+|.|+++ ..++++++
T Consensus 256 ~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l~~--~~~v~l~v~R~g~--~~~~~v~p 319 (332)
T 3num_A 256 AYIIEVIPDTPAEAGGLKENDVIISINGQSVVSA--NDVSDVIKR--ESTLNMVVRRGNE--DIMITVIP 319 (332)
T ss_dssp ----------------------------------------------------------------------
T ss_pred eEEEEeccCCChHHcCCCCCCEEEEECCEECCCH--HHHHHHHhC--CCeEEEEEEECCE--EEEEEEEE
Confidence 7899999999999999999999999999999874 566667753 7889999999873 45555544
No 198
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=97.88 E-value=3.1e-06 Score=86.06 Aligned_cols=64 Identities=16% Similarity=0.268 Sum_probs=53.9
Q ss_pred EEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcC-CCCCeEEEEEEeCCCCceEEEEE
Q 016195 198 LKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQG-PSETFVTIEVKHGNCGPIESIQV 265 (393)
Q Consensus 198 l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g-~~G~~V~Ltv~r~~~~~~~~v~l 265 (393)
++|..|.++|||++|||++||+|++|||+++..+ .++...+.. +.|++++|++.|++ +..++++
T Consensus 288 ~~V~~V~~gspA~~AGL~~GDvI~~inG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g--~~~~~~v 352 (448)
T 1ky9_A 288 AFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSF--AALRAQVGTMPVGSKLTLGLLRDG--KQVNVNL 352 (448)
T ss_dssp EECCCCTTCSSSTTTTCCTTCEECBSSSSBCCSS--HHHHHHTTSSBTTCCCEEEEESSS--CEEECCC
T ss_pred eEEEEeccCCHHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECC--EEEEEEE
Confidence 7899999999999999999999999999999986 577777764 57899999999987 3344444
No 199
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=97.83 E-value=6.6e-05 Score=77.82 Aligned_cols=67 Identities=12% Similarity=0.165 Sum_probs=50.0
Q ss_pred EEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCH--------HHHHHHh-cCCCCCeEEEEEEeCCCCceEEEEE
Q 016195 198 LKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSA--------FEVSSLL-QGPSETFVTIEVKHGNCGPIESIQV 265 (393)
Q Consensus 198 l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~--------~~v~~~L-~g~~G~~V~Ltv~r~~~~~~~~v~l 265 (393)
++|..|.++|||+++ |++||+|++|||+++..... ..+..++ ..++|++|+|+|.|+++....++++
T Consensus 279 v~V~~V~~~spA~~a-l~~GDvI~~idg~~V~~~g~~~~~~~~~~~l~~~v~~~~~Gd~v~l~v~R~Gk~~~v~Vtl 354 (539)
T 4fln_A 279 VLVRRVEPTSDASKV-LKEGDVIVSFDDLHVGCEGTVPFRSSERIAFRYLISQKFAGDIAEIGIIRAGEHKKVQVVL 354 (539)
T ss_dssp EEEEEECTTSGGGGT-CCTTCEEEEETTEECBSSSEEECSTTCEEETHHHHHTSCTTCEEEEEEEETTEEEEEEEEC
T ss_pred eeeecccCCChHHhC-ccCCCEEEEECCEEeCcCCeeccccchhHHHHHHHHcCCCCCEEEEEEEECCEEEEEEEEE
Confidence 889999999999876 99999999999999965210 1122333 3468999999999988433334444
No 200
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=97.76 E-value=3.5e-06 Score=85.65 Aligned_cols=57 Identities=19% Similarity=0.418 Sum_probs=0.0
Q ss_pred EEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeCC
Q 016195 197 TLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (393)
Q Consensus 197 ~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~~ 256 (393)
.++|..|.++|||+++||++||+|++|||+++.. .+++.+.++...+ .+.|+|.|++
T Consensus 384 gv~V~~V~~gspA~~aGL~~GDiI~~vng~~v~~--~~~l~~~l~~~~~-~v~l~v~R~g 440 (448)
T 1ky9_A 384 GVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKN--IAELRKVLDSKPS-VLALNIQRGD 440 (448)
T ss_dssp ------------------------------------------------------------
T ss_pred eEEEEEecCCCHHHHcCCCCCCEEEEECCEECCC--HHHHHHHHHcCCC-eEEEEEEECC
Confidence 3789999999999999999999999999999986 4677777876555 8899999977
No 201
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=97.70 E-value=6.5e-05 Score=65.58 Aligned_cols=63 Identities=27% Similarity=0.494 Sum_probs=47.6
Q ss_pred eeeEEEEEEeeCCCCeeEEEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEE
Q 016195 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEV 252 (393)
Q Consensus 180 ~glGi~~~~~~~~~G~~~l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv 252 (393)
..+|+.+. .| +|..+.++|||+++||++||+|++|||+++..+....+...++ ..|..+.+++
T Consensus 100 ~~lG~~~~-----~g----~v~~v~~~s~a~~aGl~~GD~I~~ing~~v~~~~~~~v~~~v~-r~g~~~~l~v 162 (166)
T 1w9e_A 100 GHVGFIFK-----NG----KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILS-TSGTVVTITI 162 (166)
T ss_dssp SCCSEEEE-----TT----EEEEECTTSHHHHTTCCSSEEEEEETTEECTTCCHHHHHHHHH-HSCSEEEEEE
T ss_pred CcEeEEEe-----CC----EEEEEccCCHHHHcCCCCCCEEEEECCEECCCCChHHHHHHHh-hCCCEEEEEE
Confidence 44677664 23 6889999999999999999999999999999987666554443 2445555544
No 202
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=97.49 E-value=1.5e-05 Score=79.49 Aligned_cols=56 Identities=21% Similarity=0.332 Sum_probs=0.0
Q ss_pred EEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEEeC
Q 016195 199 KVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (393)
Q Consensus 199 ~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~r~ 255 (393)
+|..|.++|||+++||++||+|++|||+++.+++++++...++. .+..+.|++.+.
T Consensus 318 ~I~~V~~gs~A~~aGL~~GD~Il~VNg~~v~~~s~~~~~~~l~~-~~~~v~L~V~p~ 373 (388)
T 3suz_A 318 IICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSN-SVGEIHMKTMPA 373 (388)
T ss_dssp ---------------------------------------------------------
T ss_pred EEEEeecCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEec
Confidence 67889999999999999999999999999998777888888874 566777777654
No 203
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=96.37 E-value=0.0049 Score=63.84 Aligned_cols=54 Identities=13% Similarity=0.264 Sum_probs=48.9
Q ss_pred EEEEEEcCCChhhhcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCeEEEEEE
Q 016195 198 LKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVK 253 (393)
Q Consensus 198 l~V~~V~~gsPA~~AGL~~GD~IlsVnG~~v~~~~~~~v~~~L~g~~G~~V~Ltv~ 253 (393)
++|..|.++++|..+|+++||+|++|||+++.. ..++.++++..++..+.|.+.
T Consensus 417 Vvvs~V~~~s~a~~~g~~~gdiI~~vNg~~V~s--~~~l~~~l~~~k~~~l~~~~~ 470 (539)
T 4fln_A 417 VILSQVLANEVNIGYEDMNNQQVLKFNGIPIRN--IHHLAHLIDMCKDKYLVFEFE 470 (539)
T ss_dssp EEEEEECCCGGGTTCSSCCSEEEEEETTEECCS--HHHHHHHHHTCCSSEEEEEET
T ss_pred EEEEEecCCchhhhcCCCCCCEEEeECCEEcCC--HHHHHHHHHHcCCCeEEEEEC
Confidence 789999999999999999999999999999998 688999998888888777764
No 204
>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1
Probab=83.26 E-value=0.92 Score=41.10 Aligned_cols=57 Identities=14% Similarity=0.165 Sum_probs=43.1
Q ss_pred ceEEEEEeCccchhHHHHHHHHHHHHHHC-CCCeEEEEccCCCCCcHHHHHHHHhccccC
Q 016195 287 TSVGYMRLKEFNALARKDLVTAMKRLQDM-GASYFILDLRDNLGGLVQAGIEIAKLFLNE 345 (393)
Q Consensus 287 ~~igYI~i~~F~~~~~~~l~~al~~l~~~-g~~~lIlDLR~N~GG~l~~a~~ia~lfl~~ 345 (393)
++|.+|. ...+....+++.++|..+++. ..++++|.+ +-|||.+..+..+.+.+..-
T Consensus 45 ~rii~l~-g~I~~~~a~~i~~~L~~l~~~~~~k~I~l~I-nSPGG~v~ag~~I~~~i~~~ 102 (218)
T 1y7o_A 45 DRIIMLT-GPVEDNMANSVIAQLLFLDAQDSTKDIYLYV-NTPGGSVSAGLAIVDTMNFI 102 (218)
T ss_dssp TTEEEEE-SCBCHHHHHHHHHHHHHHHHHCTTSCEEEEE-EECCBCHHHHHHHHHHHHHS
T ss_pred CCEEEEe-CEECHHHHHHHHHHHHHHHhcCCCCCEEEEE-ECcCCCHHHHHHHHHHHHhc
Confidence 4566664 344566788899999888764 478999998 77999999999888876543
No 205
>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A
Probab=77.55 E-value=5.9 Score=36.11 Aligned_cols=64 Identities=14% Similarity=0.164 Sum_probs=49.2
Q ss_pred CceEEEEEeCc-cchhHHHHHHHHHHHHHHCCCCeEEEEccCCCCCcHHHHHHHHhccccCCcEEE
Q 016195 286 TTSVGYMRLKE-FNALARKDLVTAMKRLQDMGASYFILDLRDNLGGLVQAGIEIAKLFLNEGETIT 350 (393)
Q Consensus 286 ~~~igYI~i~~-F~~~~~~~l~~al~~l~~~g~~~lIlDLR~N~GG~l~~a~~ia~lfl~~g~~v~ 350 (393)
.++|..|.+.. ++....+.+.++|.++++.+++.+||.+- .|||.+..+..+.+.+....+++.
T Consensus 7 ~~~V~vI~i~g~I~~~~~~~l~~~l~~a~~~~~~~Ivl~in-spGG~v~~~~~i~~~i~~~~~PVi 71 (230)
T 3viv_A 7 KNIVYVAQIKGQITSYTYDQFDRYITIAEQDNAEAIIIELD-TPGGRADAMMNIVQRIQQSKIPVI 71 (230)
T ss_dssp CCEEEEEEEESCBCHHHHHHHHHHHHHHHHTTCSEEEEEEE-BSCEEHHHHHHHHHHHHTCSSCEE
T ss_pred CCeEEEEEEeCEECHHHHHHHHHHHHHHhcCCCCEEEEEEe-CCCcCHHHHHHHHHHHHhCCCCEE
Confidence 35677777764 45557788999999988888999999874 899999999888887766544444
No 206
>1j7x_A IRBP, interphotoreceptor retinoid-binding protein; beta BETA alpha spiral, transport protein; 1.80A {Xenopus laevis} SCOP: c.14.1.2
Probab=63.36 E-value=7.4 Score=36.61 Aligned_cols=57 Identities=12% Similarity=0.189 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHhhh---cccChHHHHHHHHHHHHhc-CCCceee
Q 016195 102 EGIVEEAWQIVNDSFLDTGRHRWTPQNWQRKREDILSS---SIQTRSKAHGIIKRMLASL-GDPYTRF 165 (393)
Q Consensus 102 ~~~f~~~W~~v~~~y~d~~~~~~~~~dW~~v~~~y~~~---~i~t~~~~~~~i~~ml~~L-~D~ht~~ 165 (393)
.++++.+|+.++++|..++. . .++.+..... .+.+.+++...+.+++..+ +|+|...
T Consensus 5 ~~vv~~~~~~l~~~Y~f~~~----~---~a~~~~l~~~~~~~i~~~~~La~~Lt~~lq~~~~D~hl~v 65 (302)
T 1j7x_A 5 THVLHQLCDILANNYAFSER----I---PTLLQHLPNLDYSTVISEEDIAAKLNYELQSLTEDPRLVL 65 (302)
T ss_dssp HHHHHHHHHHHHHHCSCGGG----H---HHHHHHGGGSCCSSCCSHHHHHHHHHHHHHHHHCCTTCEE
T ss_pred HHHHHHHHHHHHHhCCCHHH----H---HHHHHHHhcCCcccCCCHHHHHHHHHhhhhhccCCCcEEE
Confidence 35799999999999998852 1 2555553222 2468889999999999884 9999854
No 207
>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A
Probab=58.90 E-value=20 Score=31.38 Aligned_cols=61 Identities=16% Similarity=0.189 Sum_probs=44.4
Q ss_pred ceEEEEEeCccchhHHHHHHHHHHHHHHC-CCCeEEEEccCCCCCcHHHHHHHHhccccCCcEE
Q 016195 287 TSVGYMRLKEFNALARKDLVTAMKRLQDM-GASYFILDLRDNLGGLVQAGIEIAKLFLNEGETI 349 (393)
Q Consensus 287 ~~igYI~i~~F~~~~~~~l~~al~~l~~~-g~~~lIlDLR~N~GG~l~~a~~ia~lfl~~g~~v 349 (393)
.+|.||.- .......+.+.+.|..+.+. +.++++|.+ |-|||.+..+..|.+.+..-..++
T Consensus 26 ~rii~l~g-~I~~~~a~~i~~~L~~l~~~~~~~~I~l~I-nSPGG~v~a~~~I~~~i~~~~~pV 87 (193)
T 1yg6_A 26 ERVIFLTG-QVEDHMANLIVAQMLFLEAENPEKDIYLYI-NSPGGVITAGMSIYDTMQFIKPDV 87 (193)
T ss_dssp TTEEEEES-SBCHHHHHHHHHHHHHHHHHCSSSCEEEEE-EECCBCHHHHHHHHHHHHHSSSCE
T ss_pred CCEEEEcC-EEcHHHHHHHHHHHHHHHhcCCCCCEEEEE-ECcCCCHHHHHHHHHHHHhcCCCE
Confidence 45666642 34556678888888887654 478898888 689999999999988876644333
No 208
>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1
Probab=54.95 E-value=15 Score=32.87 Aligned_cols=48 Identities=17% Similarity=0.354 Sum_probs=38.2
Q ss_pred chhHHHHHHHHHHHHHHCCCCeEEEEccCCCCCcHHHHHHHHhccccCC
Q 016195 298 NALARKDLVTAMKRLQDMGASYFILDLRDNLGGLVQAGIEIAKLFLNEG 346 (393)
Q Consensus 298 ~~~~~~~l~~al~~l~~~g~~~lIlDLR~N~GG~l~~a~~ia~lfl~~g 346 (393)
.....+.+.+.|..++..+.++++|.+ |-|||.+..+..|.+.+..-.
T Consensus 49 ~~~~a~~i~~~L~~l~~~~~k~I~l~I-NSPGGsv~a~~~I~~~i~~~~ 96 (215)
T 2f6i_A 49 NKKTADELISQLLYLDNINHNDIKIYI-NSPGGSINEGLAILDIFNYIK 96 (215)
T ss_dssp CHHHHHHHHHHHHHHHHHCCSCEEEEE-EECCBCHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHHHHhCCCCcEEEEE-ECCCCCHHHHHHHHHHHHhcC
Confidence 445678888888888776668888888 689999999999988876543
No 209
>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A
Probab=48.72 E-value=23 Score=31.34 Aligned_cols=51 Identities=20% Similarity=0.214 Sum_probs=39.2
Q ss_pred chhHHHHHHHHHHHHHH-CCCCeEEEEccCCCCCcHHHHHHHHhccccCCcEE
Q 016195 298 NALARKDLVTAMKRLQD-MGASYFILDLRDNLGGLVQAGIEIAKLFLNEGETI 349 (393)
Q Consensus 298 ~~~~~~~l~~al~~l~~-~g~~~lIlDLR~N~GG~l~~a~~ia~lfl~~g~~v 349 (393)
.....+.+.+.|..+.+ .+.++++|.+ |-|||.+..+..|.+.+..-..++
T Consensus 37 ~~~~a~~i~~~L~~~~~~~~~k~I~l~I-nSPGG~v~a~~~I~~~i~~~~~pV 88 (208)
T 2cby_A 37 NDEIANRLCAQILLLAAEDASKDISLYI-NSPGGSISAGMAIYDTMVLAPCDI 88 (208)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSSCEEEEE-EECCBCHHHHHHHHHHHHHCSSCE
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCEEEEE-ECCCCCHHHHHHHHHHHHhcCCCE
Confidence 44567888888988775 3588999888 689999999999988876644333
No 210
>3bl4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 2.20A {Arthrobacter SP}
Probab=39.86 E-value=63 Score=26.27 Aligned_cols=57 Identities=7% Similarity=0.089 Sum_probs=42.3
Q ss_pred CceEEEEEeCc---cchhHHHHHHHHHHHHHHCCCCeEEEEccCCCCCcHHHHHHHHhccccCC
Q 016195 286 TTSVGYMRLKE---FNALARKDLVTAMKRLQDMGASYFILDLRDNLGGLVQAGIEIAKLFLNEG 346 (393)
Q Consensus 286 ~~~igYI~i~~---F~~~~~~~l~~al~~l~~~g~~~lIlDLR~N~GG~l~~a~~ia~lfl~~g 346 (393)
.++|.|+++.. ++...++.+...+.++...+.-.+++|+|.. +..-.+|- ..|...+
T Consensus 18 ~dGIl~~~~~~~~~i~~e~A~~~~~~~~~l~~~~~~~vL~D~r~~-~~~s~~AR---~~~~~~~ 77 (124)
T 3bl4_A 18 GDGILRLTWPRGAAITAADAERAMLRVNQLCGDDRHPMLVDMATT-ADVSRGAR---AVFGRPC 77 (124)
T ss_dssp TTSCEEEECSSSSCCCHHHHHHHHHHHHHHHTTCCEEEEEECCSS-THHHHHHH---HHHCCCC
T ss_pred CCCEEEEEEcCCCccCHHHHHHHHHHHHHHhCCCceEEEEEcccc-cCCCHHHH---HHHhCcc
Confidence 47899999987 5667788888888888888888999999988 44444443 3455444
No 211
>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A
Probab=38.21 E-value=42 Score=29.69 Aligned_cols=61 Identities=16% Similarity=0.222 Sum_probs=43.4
Q ss_pred ceEEEEEeCccchhHHHHHHHHHHHHHHCC-CCeEEEEccCCCCCcHHHHHHHHhccccCCcEE
Q 016195 287 TSVGYMRLKEFNALARKDLVTAMKRLQDMG-ASYFILDLRDNLGGLVQAGIEIAKLFLNEGETI 349 (393)
Q Consensus 287 ~~igYI~i~~F~~~~~~~l~~al~~l~~~g-~~~lIlDLR~N~GG~l~~a~~ia~lfl~~g~~v 349 (393)
++|-||. ........+.+...|..++..+ .+.++|.+ |-|||.+..+..|.+.+..-..++
T Consensus 27 ~riI~l~-g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~I-nSPGG~v~~~~~I~~~i~~~~~~V 88 (203)
T 3qwd_A 27 DRIIMLG-SQIDDNVANSIVSQLLFLQAQDSEKDIYLYI-NSPGGSVTAGFAIYDTIQHIKPDV 88 (203)
T ss_dssp TTEEEEC-SCBCHHHHHHHHHHHHHHHHHCSSSCEEEEE-EECCBCHHHHHHHHHHHHHSSSCE
T ss_pred CCEEEEc-CEECHHHHHHHHHHHHHHHhcCCCCCEEEEE-eCCCCCHHHHHHHHHHHHHhcCCc
Confidence 3455554 2234567788888888887654 67888887 589999999999988876543333
No 212
>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1
Probab=37.12 E-value=45 Score=29.45 Aligned_cols=57 Identities=14% Similarity=0.221 Sum_probs=42.3
Q ss_pred ceEEEEEeCccchhHHHHHHHHHHHHHHCC-CCeEEEEccCCCCCcHHHHHHHHhccccC
Q 016195 287 TSVGYMRLKEFNALARKDLVTAMKRLQDMG-ASYFILDLRDNLGGLVQAGIEIAKLFLNE 345 (393)
Q Consensus 287 ~~igYI~i~~F~~~~~~~l~~al~~l~~~g-~~~lIlDLR~N~GG~l~~a~~ia~lfl~~ 345 (393)
.+|-||.- .......+.+...|..++..+ .+.++|-+ |-|||.+..+..+.+.+..-
T Consensus 30 ~riI~l~g-~I~~~~a~~i~~~L~~l~~~~~~~~I~l~I-NSpGG~v~~~~~I~~~i~~~ 87 (201)
T 3p2l_A 30 ERIVFLNG-EVNDHSANLVIAQLLFLESEDPDKDIYFYI-NSPGGMVTAGMGVYDTMQFI 87 (201)
T ss_dssp TTEEEEES-CBCHHHHHHHHHHHHHHHHHCSSSCEEEEE-EECCBCHHHHHHHHHHHHHS
T ss_pred CCEEEEcC-EECHHHHHHHHHHHHHHHhcCCCCCEEEEE-ECCCCCHHHHHHHHHHHHHh
Confidence 45666653 234567788888888887644 68888888 68999999999998887654
No 213
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=30.24 E-value=38 Score=30.52 Aligned_cols=47 Identities=36% Similarity=0.559 Sum_probs=36.3
Q ss_pred hhhcCCCCCCEEEEECCEEcCCCC---HHHHHHHhcCCCCCeEEEEEEeC
Q 016195 209 AHSAGVRQGDEVLAVNGVDVRGKS---AFEVSSLLQGPSETFVTIEVKHG 255 (393)
Q Consensus 209 A~~AGL~~GD~IlsVnG~~v~~~~---~~~v~~~L~g~~G~~V~Ltv~r~ 255 (393)
+++.|++.|..++++||.++.+.. ..++...+.|+.+.++-+..-.+
T Consensus 52 ~~~d~~~~~~~~~~~ng~~~~~~~~~d~~~v~~~iigk~N~PLyir~f~~ 101 (219)
T 2j3t_D 52 GQRDGIRVGHAVLAINGMDVNGRYTADGKEVLEYLGNPANYPVSIRFGRP 101 (219)
T ss_dssp CCCTTCCTTCEEEEETTEECBTTBCTTSSBHHHHTTCGGGCSEEEEEECC
T ss_pred cccCCccccceeeecCCccCCCcccccCceeeeeeecCCCCceEEEecCC
Confidence 457789999999999999998742 23577888888877777765544
No 214
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=29.40 E-value=70 Score=24.33 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=25.9
Q ss_pred EEEEEeC-ccchhHHHHHHHHHHHHHHCC-CCeEEEEccCC
Q 016195 289 VGYMRLK-EFNALARKDLVTAMKRLQDMG-ASYFILDLRDN 327 (393)
Q Consensus 289 igYI~i~-~F~~~~~~~l~~al~~l~~~g-~~~lIlDLR~N 327 (393)
+..+++. .+.....+.+++.+.++..++ .+.+|||+++=
T Consensus 13 ~~vv~l~G~l~~~~~~~l~~~l~~~~~~~~~~~vvlDls~v 53 (116)
T 1th8_B 13 VLIVRLSGELDHHTAEELREQVTDVLENRAIRHIVLNLGQL 53 (116)
T ss_dssp EEEEEEEEEESHHHHHHHHHHHHHHHHSSCCCEEEEEEEEE
T ss_pred EEEEEEeeeeccccHHHHHHHHHHHHhcCCCcEEEEECCCC
Confidence 4444443 334455678888888776655 78999999854
No 215
>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1
Probab=28.37 E-value=78 Score=29.46 Aligned_cols=60 Identities=15% Similarity=0.147 Sum_probs=41.5
Q ss_pred eEEEEEeCccchhHHHHHHHHHHHHHH-CCCCeEEEEccCCCCCcHHHHHHHHhccccCCcEE
Q 016195 288 SVGYMRLKEFNALARKDLVTAMKRLQD-MGASYFILDLRDNLGGLVQAGIEIAKLFLNEGETI 349 (393)
Q Consensus 288 ~igYI~i~~F~~~~~~~l~~al~~l~~-~g~~~lIlDLR~N~GG~l~~a~~ia~lfl~~g~~v 349 (393)
.|-+|.-. ......+.+...|..++. .+.+.++|.+ |-|||.+..+..|.+.+..-..++
T Consensus 83 rII~l~G~-I~d~~a~~iiaqL~~l~~ed~~k~I~L~I-NSPGGsV~ag~aIyd~I~~~k~pV 143 (277)
T 1tg6_A 83 RIVCVMGP-IDDSVASLVIAQLLFLQSESNKKPIHMYI-NSPGGVVTAGLAIYDTMQYILNPI 143 (277)
T ss_dssp TEEEEESS-BCHHHHHHHHHHHHHHHHHCSSSCEEEEE-EECCBCHHHHHHHHHHHHHSCSCE
T ss_pred cEEEEcCE-ECHHHHHHHHHHHHHHHhcCCCCCEEEEE-ECCCCCHHHHHHHHHHHHhcCCCE
Confidence 44444422 344567788888887765 4578888888 689999999999988876543333
No 216
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=28.16 E-value=75 Score=25.13 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=28.9
Q ss_pred ceEEEEEeC-ccchhHHHHHHHHHHHHHHC---CCCeEEEEccCC
Q 016195 287 TSVGYMRLK-EFNALARKDLVTAMKRLQDM---GASYFILDLRDN 327 (393)
Q Consensus 287 ~~igYI~i~-~F~~~~~~~l~~al~~l~~~---g~~~lIlDLR~N 327 (393)
+++..+++. .+.....+.|++.+.++... +.+.+|||+++=
T Consensus 14 ~~v~v~~l~G~L~f~~a~~~~~~l~~~~~~~~~~~~~vvlDls~v 58 (130)
T 2kln_A 14 PGLVVYRYDAPLCFANAEDFRRRALTVVDQDPGQVEWFVLNAESN 58 (130)
T ss_dssp SSEEEEECCSCCBTTTHHHHHHHHHHHTTSSSSCCEEEEEECSCC
T ss_pred CCEEEEEECCceEechHHHHHHHHHHHHhcCCCCceEEEEECCCC
Confidence 346666665 34445678899988886554 578999999843
No 217
>3qf7_D MRE11; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima}
Probab=25.14 E-value=87 Score=20.65 Aligned_cols=36 Identities=11% Similarity=0.164 Sum_probs=26.8
Q ss_pred CChhhHHHHHHHHhhhcccChHHHHHHHHHHHHhcC
Q 016195 124 WTPQNWQRKREDILSSSIQTRSKAHGIIKRMLASLG 159 (393)
Q Consensus 124 ~~~~dW~~v~~~y~~~~i~t~~~~~~~i~~ml~~L~ 159 (393)
.+..|+.++.++|+.....+-..+-.++.+++.+..
T Consensus 4 ~~kld~felfkey~k~r~~~he~l~k~~~ell~evk 39 (50)
T 3qf7_D 4 LDKLDYFELFKEYLKKREENHEKLLKILDELLDEVK 39 (50)
T ss_dssp ---CCHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHH
T ss_pred hhHhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 356789999999998777777778888888887653
No 218
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=23.26 E-value=1.1e+02 Score=24.11 Aligned_cols=44 Identities=16% Similarity=0.045 Sum_probs=30.9
Q ss_pred ceEEEEEeCc-cchhHHHHHHHHHHHHHHCCCCeEEEEccCCCCCc
Q 016195 287 TSVGYMRLKE-FNALARKDLVTAMKRLQDMGASYFILDLRDNLGGL 331 (393)
Q Consensus 287 ~~igYI~i~~-F~~~~~~~l~~al~~l~~~g~~~lIlDLR~N~GG~ 331 (393)
+++..+++.. +.-...+.|++.+..+ ..+.+.+|||+++=..=.
T Consensus 19 ~~v~v~~~~G~L~f~~a~~~~~~l~~~-~~~~~~vvlDls~v~~iD 63 (130)
T 4dgh_A 19 RELAVYALEGPFFFAAAETFERVMGSI-QETPQILILRLKWVPFMD 63 (130)
T ss_dssp TTEEEEECCSSCCHHHHHHHHHHHHHS-SSCCSEEEEECTTCCCCC
T ss_pred CCEEEEEEeeeEeehhHHHHHHHHHHh-ccCCCEEEEECCCCCccc
Confidence 4566677653 4445678888888765 457899999999766543
No 219
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=22.79 E-value=69 Score=25.29 Aligned_cols=43 Identities=16% Similarity=0.058 Sum_probs=29.8
Q ss_pred ceEEEEEeC-ccchhHHHHHHHHHHH-HHHCCCCeEEEEccCCCC
Q 016195 287 TSVGYMRLK-EFNALARKDLVTAMKR-LQDMGASYFILDLRDNLG 329 (393)
Q Consensus 287 ~~igYI~i~-~F~~~~~~~l~~al~~-l~~~g~~~lIlDLR~N~G 329 (393)
+++..+++. .+.....+.|++.+.+ +...+.+.+|||+.+=.-
T Consensus 20 ~~~~vv~l~G~Ld~~~a~~l~~~l~~~~~~~~~~~vvlDls~V~~ 64 (125)
T 2ka5_A 20 DDVVILMPNKELNIENAHLFKKWVFDEFLNKGYNKIFLVLSDVES 64 (125)
T ss_dssp SSCEEECCCSCCSGGGTHHHHHHHHHHTTTTTCCEEEEECTTCSC
T ss_pred CCEEEEEEecEEecccHHHHHHHHHHHHhhCCCCEEEEECCCCCE
Confidence 345555554 3444566788888887 555678899999986654
No 220
>3t6o_A Sulfate transporter/antisigma-factor antagonist S; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.10A {Planctomyces limnophilus}
Probab=20.64 E-value=1.1e+02 Score=23.88 Aligned_cols=42 Identities=10% Similarity=0.159 Sum_probs=30.0
Q ss_pred ceEEEEEeCc-c---chhHHHHHHHHHHHHH-HCCCCeEEEEccCCC
Q 016195 287 TSVGYMRLKE-F---NALARKDLVTAMKRLQ-DMGASYFILDLRDNL 328 (393)
Q Consensus 287 ~~igYI~i~~-F---~~~~~~~l~~al~~l~-~~g~~~lIlDLR~N~ 328 (393)
+++..|++.. + ......++++.+.+.- ..+.+.+|||+.+=.
T Consensus 13 ~~~~vv~l~G~l~~ld~~~~~~l~~~l~~~l~~~~~~~vvlDls~v~ 59 (121)
T 3t6o_A 13 AQVTVISFPAVFQRLRETEVEQIASTFLAAMQGAQPRKVLIDLEGVE 59 (121)
T ss_dssp TTEEEEECCGGGSEECHHHHHHHHHHHHHTTCCSSSCEEEEECTTCC
T ss_pred CCEEEEEEccccccCchhhHHHHHHHHHHHHhhcCCCeEEEECCCCC
Confidence 4677777764 2 4556778888876543 467899999999754
No 221
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Probab=20.44 E-value=80 Score=24.70 Aligned_cols=43 Identities=19% Similarity=0.067 Sum_probs=29.3
Q ss_pred ceEEEEEeC-ccchhHHHHHHHHHHHHHHCCCCeEEEEccCCCCC
Q 016195 287 TSVGYMRLK-EFNALARKDLVTAMKRLQDMGASYFILDLRDNLGG 330 (393)
Q Consensus 287 ~~igYI~i~-~F~~~~~~~l~~al~~l~~~g~~~lIlDLR~N~GG 330 (393)
+++..+++. .+.-...+.+.+.+.++. .+.+.+|||+++=+.=
T Consensus 16 ~~v~v~~l~G~L~f~~a~~l~~~l~~~~-~~~~~vilDl~~v~~i 59 (118)
T 3ny7_A 16 DDVLVLRVIGPLFFAAAEGLFTDLESRL-EGKRIVILKWDAVPVL 59 (118)
T ss_dssp TTEEEEEEESCBCHHHHHHHHHHHHTTC-TTCSEEEEEEEECCCB
T ss_pred CCEEEEEEeceeEehhHHHHHHHHHHhc-CCCcEEEEEcCCCCee
Confidence 456666665 344456777877776643 4689999999976643
Done!