Query 016196
Match_columns 393
No_of_seqs 219 out of 480
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 09:31:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016196.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016196hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hyg_A Putative uncharacterize 99.9 1.5E-27 5.3E-32 229.5 11.5 174 186-374 108-297 (301)
2 2kr6_A Presenilin-1; protease, 96.6 0.0035 1.2E-07 56.5 6.3 66 290-366 88-156 (176)
3 3iib_A Peptidase M28; YP_92679 28.5 33 0.0011 34.4 3.2 34 11-44 193-226 (444)
4 3rlb_A THIT; S-component, ECF 7.5 1E+03 0.035 21.0 7.1 32 348-379 150-189 (192)
5 4a8x_A RNA-binding protein wit 6.3 4.2E+02 0.014 18.8 3.3 33 15-47 48-87 (88)
6 3er0_A Eukaryotic translation 6.0 3.3E+02 0.011 23.9 2.9 35 6-44 117-151 (167)
7 2a9h_A Voltage-gated potassium 4.5 9.2E+02 0.032 20.2 4.8 9 290-298 97-105 (155)
8 4av3_A K(+)-stimulated pyropho 4.4 1.9E+03 0.067 23.5 8.2 24 51-74 11-34 (735)
9 3f3q_A Thioredoxin-1; His TAG, 4.0 6.1E+02 0.021 18.8 3.0 26 21-46 11-36 (109)
10 2ek8_A Aminopeptidase; metallo 3.9 7.2E+02 0.025 24.0 4.1 22 10-31 160-181 (421)
No 1
>4hyg_A Putative uncharacterized protein; protease, membrane protein; 3.32A {Methanoculleus marisnigri JR1} PDB: 4hyc_A 4hyd_A
Probab=99.94 E-value=1.5e-27 Score=229.50 Aligned_cols=174 Identities=21% Similarity=0.279 Sum_probs=122.2
Q ss_pred HHHHHHHHhhhhhhcccccchhhhhHHHHHHHHHHHHhccc--CchhHHHHHHHHHHHhhhhhhhhcccccccceeeeec
Q 016196 186 LLFCVVFAVVWAVRRQASYSWVGQDILGICLMITVLQMARL--PNIKVASVLLCCAFVYDIFWVFVSPLIFHESVMIAVA 263 (393)
Q Consensus 186 ~~~~~~~~~~w~~~~~~~~~Wil~nilgi~~~i~~i~~i~l--~s~k~~~iLL~~lf~YDiF~VF~tp~~fg~sVMv~VA 263 (393)
...++++++..+.+. +|+..|+.|+++|..+...+.+ ..+ .+.+||+++.+||.+|||.|+ +|+++|
T Consensus 108 ~~~a~~~~~ll~~yp----eWyvid~~Gi~~~aG~aalFGISl~~~-paiiLL~~LavYDaISVy~Tk------HMvtLA 176 (301)
T 4hyg_A 108 LIGAVAVTALLYLYP----EWYVIDILGVLISAGVASIFGISLEPL-PVLVLLVLLAVYDAISVYRTK------HMITLA 176 (301)
T ss_dssp HHHHHHHHHHHHTCC----CSSHHHHHHHHHHHHHHHHHHHSSCHH-HHHHHHHHHHHHHHHHHHHHH------HHHHHT
T ss_pred HHHHHHHHHHHHhcc----cHHHhhHHHHHHHhhHHHHHhhccchH-HHHHHHHHHHHHHhhhccCch------HHHHHH
Confidence 344555655555555 4999999999999998886555 666 899999999999999999555 999999
Q ss_pred ccCCCCCCCCCEEEEeccccC-------------CCCccccccCCCcchhhHHHHHHHhhhccccc-CccchhHHHHHHH
Q 016196 264 RGDNSGGESIPMLLRIPRLFD-------------PWGGYDMIGFGDILFPGLLICFAFRYDKENKK-GVVKGYFLWLIIG 329 (393)
Q Consensus 264 ~~~~~~~~~lP~~l~~P~~~~-------------~~~~~s~LGlGDIviPGllia~~~rfD~~~~~-~~~~~YF~~~~ig 329 (393)
+|.- +.|+|+++++|+..+ .+++..++|+||+++|+++++.+.|||..... ...+.-+..+++|
T Consensus 177 egvm--dlk~PilfViP~~~~ys~~~~~~~~~~~~er~a~~iGlGD~viP~ilVvSa~~F~~~~~~~g~~~lPalgA~~G 254 (301)
T 4hyg_A 177 EGVL--ETKAPIMVVVPKRADYSFRKEGLNISEGEERGAFVMGMGDLIMPSILVVSSHVFVDAPAVLWTLSAPTLGAMVG 254 (301)
T ss_dssp TTC----------------------------------CHHHHHHHHHHHHHHHHHHHHCC---------CCCSCHHHHHH
T ss_pred Hhhh--ccCCceEEEEecCCCccccccccccccccccceeEecCcchhHHHHHHHHHHHHcccccccccccchHHHHHHH
Confidence 9964 358999999998432 14678899999999999999999999964431 1011238899999
Q ss_pred HHHHHHHHHHHHHHhcCCCcceehhhchhhhHHHHHHHHHhchhh
Q 016196 330 YGFGLFLTYLGLYLMNGHGQPALLYLVPCTLGLTVILGLARGELK 374 (393)
Q Consensus 330 Y~~GL~~t~~~l~~~~~~~QPALLYLvP~~L~~~~~~A~~rgEl~ 374 (393)
|.+||.++... ++++++||.|.||++.++++.++.++.+||+.
T Consensus 255 t~~Gl~vLl~~--V~~grpqaGLP~LN~GaI~Gfllg~l~~G~~~ 297 (301)
T 4hyg_A 255 SLVGLAVLLYF--VNKGNPQAGLPPLNGGAILGFLVGAALAGSFS 297 (301)
T ss_dssp HHHHHHHHHHH--HTSSSCCCSHHHHHHHHHHHHHHTTSCC----
T ss_pred HHHHHHHHHHH--HHcCCCCCCCCccchHHHHHHHHHHHHhceec
Confidence 99999999762 33599999999999999999999999999987
No 2
>2kr6_A Presenilin-1; protease, alternative splicing, alzheimer disease, amyloidos apoptosis, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=96.55 E-value=0.0035 Score=56.51 Aligned_cols=66 Identities=29% Similarity=0.348 Sum_probs=53.7
Q ss_pred ccccCCCcchhhHHHHHHH--h-hhcccccCccchhHHHHHHHHHHHHHHHHHHHHHhcCCCcceehhhchhhhHHHHHH
Q 016196 290 DMIGFGDILFPGLLICFAF--R-YDKENKKGVVKGYFLWLIIGYGFGLFLTYLGLYLMNGHGQPALLYLVPCTLGLTVIL 366 (393)
Q Consensus 290 s~LGlGDIviPGllia~~~--r-fD~~~~~~~~~~YF~~~~igY~~GL~~t~~~l~~~~~~~QPALLYLvP~~L~~~~~~ 366 (393)
--|||||.|+=+++++-+. + .|.. -..+|++|..+||.+|.+.+.++ +++-|||.. |..++.++-.
T Consensus 88 ikLGLGDFIFYSvLVgkAa~~~~~d~~--------t~~ac~vaIL~GL~~TL~lLa~~-~~aLPALPi--SI~lG~~fyf 156 (176)
T 2kr6_A 88 VKLGLGDFIFYSVLVGKASATASGDWN--------TTIACFVAILIGLCLTLLLLAIF-KKALPALPI--SITFGLVFYF 156 (176)
T ss_dssp CSSCTTTHHHHHHHHHHHHHHSCCTTT--------THHHHHHHHHHHHHHHHHHHHHH-TCSCSSSSS--CCCCHHHHHH
T ss_pred ccccccCeeehHHHHHHHHHhhccCHH--------HHHHHHHHHHHHHHHHHHHHhhh-cccCCCCcH--HHHHHHHHHH
Confidence 4599999999999999887 5 3542 35789999999999999999998 899999986 5566655443
No 3
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}
Probab=28.51 E-value=33 Score=34.37 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=28.4
Q ss_pred ccCceEEEeechhhhHHHHhhhcCCeEEEEEecC
Q 016196 11 NISIPVLMIPKSRGDALNKSIADKQRVELLLYAP 44 (393)
Q Consensus 11 ~i~Ipv~~~~~~~~~~l~~~~~~g~~v~v~ly~p 44 (393)
..+||++.|+..|++.|.+.++.|+.+++.+...
T Consensus 193 ~~~IP~~~Is~~da~~L~~~l~~g~~~~v~l~~~ 226 (444)
T 3iib_A 193 VTAIPAAAISNPDADLINAMLKRDKEVVISLELG 226 (444)
T ss_dssp SCCCCEEEECHHHHHHHHHHHTTTCCCEEEEEEE
T ss_pred CCCCCeEEecHHHHHHHHHHHhCCCCeEEEEEEe
Confidence 5789999999999999999888887777666543
No 4
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}
Probab=7.48 E-value=1e+03 Score=20.99 Aligned_cols=32 Identities=22% Similarity=0.196 Sum_probs=17.5
Q ss_pred Ccceehh--------hchhhhHHHHHHHHHhchhhhcccc
Q 016196 348 GQPALLY--------LVPCTLGLTVILGLARGELKHLWDY 379 (393)
Q Consensus 348 ~QPALLY--------LvP~~L~~~~~~A~~rgEl~~~W~~ 379 (393)
||++.+| ..|-.+++.+++...-+-++++...
T Consensus 150 g~~~~~ySl~~N~~~~l~~~ii~~iv~~lL~k~~~~~~~~ 189 (192)
T 3rlb_A 150 GWGAVAYSLAVNGISGILTAIAAFVILIIFVKKFPKLFIH 189 (192)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSC
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 6666554 3444455555555555556665543
No 5
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=6.31 E-value=4.2e+02 Score=18.79 Aligned_cols=33 Identities=15% Similarity=0.147 Sum_probs=24.7
Q ss_pred eEEEeechhhhHHHHhhh-------cCCeEEEEEecCCCC
Q 016196 15 PVLMIPKSRGDALNKSIA-------DKQRVELLLYAPNRP 47 (393)
Q Consensus 15 pv~~~~~~~~~~l~~~~~-------~g~~v~v~ly~p~~p 47 (393)
..+.+.+.+-.+.+++++ .|+.++|....|+.|
T Consensus 48 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 87 (88)
T 4a8x_A 48 GYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPWP 87 (88)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECCCCC
T ss_pred cEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCCCCC
Confidence 367888887777766654 267889999988876
No 6
>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae}
Probab=5.96 E-value=3.3e+02 Score=23.88 Aligned_cols=35 Identities=17% Similarity=0.313 Sum_probs=25.6
Q ss_pred CCCccccCceEEEeechhhhHHHHhhhcCCeEEEEEecC
Q 016196 6 NDTALNISIPVLMIPKSRGDALNKSIADKQRVELLLYAP 44 (393)
Q Consensus 6 ~~~~~~i~Ipv~~~~~~~~~~l~~~~~~g~~v~v~ly~p 44 (393)
+++++++.+|-- .=++.++..+..|.+|.|.+|+-
T Consensus 117 ~etyeqi~l~~~----~lgd~i~~~l~eg~~v~V~~~~~ 151 (167)
T 3er0_A 117 GDTKDDVKAPEG----ELGDSLQTAFDEGKDLMVTIISA 151 (167)
T ss_dssp SCCCSCCCCCCS----SHHHHHHHTTSSCCCCEEEEEEE
T ss_pred CCeeEEEEcCHH----HHHHHHHHHhhCCCEEEEEEEhh
Confidence 678999999832 22455767777899999988763
No 7
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=4.52 E-value=9.2e+02 Score=20.20 Aligned_cols=9 Identities=33% Similarity=1.047 Sum_probs=6.9
Q ss_pred ccccCCCcc
Q 016196 290 DMIGFGDIL 298 (393)
Q Consensus 290 s~LGlGDIv 298 (393)
+=+|+||+.
T Consensus 97 tTVGYGDi~ 105 (155)
T 2a9h_A 97 TTVGYGDLY 105 (155)
T ss_dssp TTCCCSSSC
T ss_pred ecccCCCCC
Confidence 347999986
No 8
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=4.45 E-value=1.9e+03 Score=23.50 Aligned_cols=24 Identities=8% Similarity=0.108 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHHHHhhhhhccc
Q 016196 51 FAVIFLWMMAVGTIIAAALWSLLT 74 (393)
Q Consensus 51 ~s~v~l~lmAv~tV~~Gs~wS~~~ 74 (393)
+-..+.|+.++..+.++.+...+.
T Consensus 11 ~v~~l~~~~~i~~l~~a~~~~~~v 34 (735)
T 4av3_A 11 YVAALFFLIPLVALGFAAANFAAV 34 (735)
T ss_dssp CHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888887776543
No 9
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Probab=4.03 E-value=6.1e+02 Score=18.75 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=20.6
Q ss_pred chhhhHHHHhhhcCCeEEEEEecCCC
Q 016196 21 KSRGDALNKSIADKQRVELLLYAPNR 46 (393)
Q Consensus 21 ~~~~~~l~~~~~~g~~v~v~ly~p~~ 46 (393)
..+..++++.+..|+.+-|.+|+|.=
T Consensus 11 ~~~~~~f~~~~~~~k~vlv~f~a~wC 36 (109)
T 3f3q_A 11 FKTASEFDSAIAQDKLVVVDFYATWC 36 (109)
T ss_dssp CCSHHHHHHHTTSSSCEEEEEECTTC
T ss_pred CCCHHHHHHHHhcCCEEEEEEECCcC
Confidence 34566788888889999999999844
No 10
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*
Probab=3.92 E-value=7.2e+02 Score=23.98 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=19.5
Q ss_pred cccCceEEEeechhhhHHHHhh
Q 016196 10 LNISIPVLMIPKSRGDALNKSI 31 (393)
Q Consensus 10 ~~i~Ipv~~~~~~~~~~l~~~~ 31 (393)
...+||++.++.+|++.|.+.+
T Consensus 160 ~~~~IP~~~Is~~~a~~L~~~l 181 (421)
T 2ek8_A 160 DASFVAAVGITKQEGDALAANL 181 (421)
T ss_dssp CTTCCEEEEECHHHHHHHHHHH
T ss_pred CCCCccEEEeCHHHHHHHHHHh
Confidence 3578999999999999998877
Done!