Query 016196
Match_columns 393
No_of_seqs 219 out of 480
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 09:31:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016196.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016196hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtm1 f.23.35.1 (M:1-36) Pho 9.9 53 0.0039 20.4 1.3 19 110-128 9-27 (36)
2 d1r3jc_ f.14.1.1 (C:) Potassiu 5.7 4E+02 0.029 18.7 5.0 9 290-298 53-61 (103)
3 d1q90g_ f.23.26.1 (G:) PetG su 5.7 1.5E+02 0.011 17.3 1.9 15 355-369 13-27 (30)
4 d1o0pa_ d.58.7.1 (A:) Splicing 5.1 1.8E+02 0.013 20.8 2.5 29 16-44 60-95 (104)
5 d1meka_ c.47.1.2 (A:) Protein 5.0 2.3E+02 0.017 19.9 3.2 29 16-47 9-37 (120)
6 d1vl6a2 c.58.1.3 (A:1-154) Mal 5.0 99 0.0072 25.0 0.9 13 287-299 65-77 (154)
7 d1bvyf_ c.23.5.1 (F:) FMN-bind 4.7 65 0.0048 25.2 -0.4 28 287-314 84-111 (152)
8 d2axtt1 f.23.34.1 (T:1-30) Pho 4.4 1.7E+02 0.012 17.0 1.4 12 235-246 12-23 (30)
9 d1dina_ c.69.1.9 (A:) Dienelac 4.3 2.9E+02 0.021 21.7 3.6 36 8-43 155-198 (233)
10 d1blea_ c.38.1.1 (A:) Fructose 4.2 2.5E+02 0.018 22.2 2.9 38 15-53 118-155 (161)
No 1
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.85 E-value=53 Score=20.37 Aligned_cols=19 Identities=42% Similarity=0.840 Sum_probs=14.0
Q ss_pred ccchhhhHHHHHHHHHHHH
Q 016196 110 KGAIVFVIVASTFLVLLYF 128 (393)
Q Consensus 110 ~~a~~Fpv~as~~Ll~LY~ 128 (393)
-...+|+++-+++|+.||.
T Consensus 9 iAt~LFilvPt~FLliLyv 27 (36)
T d2axtm1 9 IATALFVLVPSVFLIILYV 27 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhe
Confidence 3456788888888888774
No 2
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=5.72 E-value=4e+02 Score=18.72 Aligned_cols=9 Identities=33% Similarity=1.047 Sum_probs=7.1
Q ss_pred ccccCCCcc
Q 016196 290 DMIGFGDIL 298 (393)
Q Consensus 290 s~LGlGDIv 298 (393)
+=+|+|||+
T Consensus 53 tTvGYGDi~ 61 (103)
T d1r3jc_ 53 TTVGYGDLY 61 (103)
T ss_dssp TTCCCSSSC
T ss_pred cccccCccc
Confidence 348999997
No 3
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.68 E-value=1.5e+02 Score=17.31 Aligned_cols=15 Identities=27% Similarity=0.363 Sum_probs=10.6
Q ss_pred hchhhhHHHHHHHHH
Q 016196 355 LVPCTLGLTVILGLA 369 (393)
Q Consensus 355 LvP~~L~~~~~~A~~ 369 (393)
++|.|+.+.+..|+.
T Consensus 13 lipiTl~Glfv~Ayl 27 (30)
T d1q90g_ 13 LVPVTIAGLFVTAYL 27 (30)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 567777777777764
No 4
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.08 E-value=1.8e+02 Score=20.77 Aligned_cols=29 Identities=10% Similarity=0.070 Sum_probs=22.0
Q ss_pred EEEeechhhhHHHHhhh-------cCCeEEEEEecC
Q 016196 16 VLMIPKSRGDALNKSIA-------DKQRVELLLYAP 44 (393)
Q Consensus 16 v~~~~~~~~~~l~~~~~-------~g~~v~v~ly~p 44 (393)
.+.+.+++-.+..+++. .|+.|++.+|.|
T Consensus 60 ~vfV~f~~~e~A~~A~~~l~Gr~f~gR~v~v~f~~~ 95 (104)
T d1o0pa_ 60 KIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDP 95 (104)
T ss_dssp EEEEEESCHHHHHHHHHHHSSCCSSSSCCEEEEECH
T ss_pred EEEEEECCHHHHHHHHHHHCCCEECCeEEEEEEcCH
Confidence 68888888777766654 478899998876
No 5
>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.00 E-value=2.3e+02 Score=19.93 Aligned_cols=29 Identities=28% Similarity=0.417 Sum_probs=20.9
Q ss_pred EEEeechhhhHHHHhhhcCCeEEEEEecCCCC
Q 016196 16 VLMIPKSRGDALNKSIADKQRVELLLYAPNRP 47 (393)
Q Consensus 16 v~~~~~~~~~~l~~~~~~g~~v~v~ly~p~~p 47 (393)
|..++.++ +++.+.+++.+-|.+|+|.=+
T Consensus 9 V~~l~~~~---f~~~l~~~k~vlV~Fya~wC~ 37 (120)
T d1meka_ 9 VLVLRKSN---FAEALAAHKYLLVEFYAPWCG 37 (120)
T ss_dssp EEECCTTT---HHHHHHHCSEEEEEEECSSCS
T ss_pred eEEcCHHH---HHHHHhcCCcEEEEEECCCcC
Confidence 55666665 455556688999999999554
No 6
>d1vl6a2 c.58.1.3 (A:1-154) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}
Probab=4.98 E-value=99 Score=25.04 Aligned_cols=13 Identities=31% Similarity=0.567 Sum_probs=10.2
Q ss_pred CccccccCCCcch
Q 016196 287 GGYDMIGFGDILF 299 (393)
Q Consensus 287 ~~~s~LGlGDIvi 299 (393)
.+-+.||||||=-
T Consensus 65 dGtaVLGLGniGp 77 (154)
T d1vl6a2 65 DGSAVLGLGNIGP 77 (154)
T ss_dssp CSTTBTTTBSCCH
T ss_pred CCceeecCCCccc
Confidence 3578999999963
No 7
>d1bvyf_ c.23.5.1 (F:) FMN-binding domain of the cytochrome P450bm-3 {Bacillus megaterium [TaxId: 1404]}
Probab=4.71 E-value=65 Score=25.15 Aligned_cols=28 Identities=18% Similarity=0.150 Sum_probs=23.0
Q ss_pred CccccccCCCcchhhHHHHHHHhhhccc
Q 016196 287 GGYDMIGFGDILFPGLLICFAFRYDKEN 314 (393)
Q Consensus 287 ~~~s~LGlGDIviPGllia~~~rfD~~~ 314 (393)
..|+++|+||---|=-|......+|...
T Consensus 84 ~~~aV~GlGds~Y~~~fc~~~~~ld~~l 111 (152)
T d1bvyf_ 84 VRYSVFGCGDKNWATTYQKVPAFIDETL 111 (152)
T ss_dssp CCEEEEEEECTTSGGGTTHHHHHHHHHH
T ss_pred ceeeeeeccccchhhhhhhHHHHHHHHH
Confidence 5799999999998877777778887653
No 8
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.37 E-value=1.7e+02 Score=16.96 Aligned_cols=12 Identities=25% Similarity=0.722 Sum_probs=8.3
Q ss_pred HHHHHHHhhhhh
Q 016196 235 LLCCAFVYDIFW 246 (393)
Q Consensus 235 LL~~lf~YDiF~ 246 (393)
-++++|++-|||
T Consensus 12 c~i~lfffaiff 23 (30)
T d2axtt1 12 CIIALFFFAIFF 23 (30)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 356777777775
No 9
>d1dina_ c.69.1.9 (A:) Dienelactone hydrolase {Pseudomonas sp., B13 [TaxId: 306]}
Probab=4.31 E-value=2.9e+02 Score=21.68 Aligned_cols=36 Identities=11% Similarity=0.298 Sum_probs=25.4
Q ss_pred CccccCceEEEe--------echhhhHHHHhhhcCCeEEEEEec
Q 016196 8 TALNISIPVLMI--------PKSRGDALNKSIADKQRVELLLYA 43 (393)
Q Consensus 8 ~~~~i~Ipv~~~--------~~~~~~~l~~~~~~g~~v~v~ly~ 43 (393)
...+++.|+.++ +.++.+.+.+.+..++++++..|.
T Consensus 155 ~~~~i~~Pvl~~~G~~D~~vp~e~~~~~~~~~~~~~~~~~~~y~ 198 (233)
T d1dina_ 155 KVPEVKHPALFHMGGQDHFVPAPSRQLITEGFGANPLLQVHWYE 198 (233)
T ss_dssp GGGGCCSCEEEEEETTCTTSCHHHHHHHHHHHTTCTTEEEEEET
T ss_pred hhhccCCcceeeecccccCCCHHHHHHHHHHHhcCCCEEEEEEC
Confidence 356788898887 334445566666778889999885
No 10
>d1blea_ c.38.1.1 (A:) Fructose permease, subunit IIb {Bacillus subtilis [TaxId: 1423]}
Probab=4.18 E-value=2.5e+02 Score=22.16 Aligned_cols=38 Identities=16% Similarity=0.201 Sum_probs=31.2
Q ss_pred eEEEeechhhhHHHHhhhcCCeEEEEEecCCCCCcchhH
Q 016196 15 PVLMIPKSRGDALNKSIADKQRVELLLYAPNRPDVDFAV 53 (393)
Q Consensus 15 pv~~~~~~~~~~l~~~~~~g~~v~v~ly~p~~p~~d~s~ 53 (393)
+-+.++.+|.+.+++....|-++.++. .|..+..|+..
T Consensus 118 ~~v~l~~ee~~~lk~l~~~Gv~v~~q~-vP~d~~~~~~~ 155 (161)
T d1blea_ 118 KSVSVTEQDIKAFETLSDKGVKLELRQ-LPSDASEDFVQ 155 (161)
T ss_dssp SSBEECHHHHHHHHHHHHTTCEEEECS-STTSCCEEHHH
T ss_pred cceeeCHHHHHHHHHHHHcCCEEEEEE-CcCCccccHHH
Confidence 557889999999999888888888876 78888888654
Done!