Query 016197
Match_columns 393
No_of_seqs 172 out of 2078
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 04:41:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016197.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016197hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5184 ATS1 Alpha-tubulin sup 100.0 4.4E-50 9.5E-55 365.8 27.3 333 33-391 63-431 (476)
2 COG5184 ATS1 Alpha-tubulin sup 100.0 1.3E-42 2.9E-47 316.9 26.3 329 19-357 106-463 (476)
3 KOG1427 Uncharacterized conser 100.0 1.7E-40 3.6E-45 284.7 18.5 312 27-357 68-397 (443)
4 KOG1427 Uncharacterized conser 100.0 6.4E-39 1.4E-43 274.9 19.4 325 34-368 16-355 (443)
5 KOG1428 Inhibitor of type V ad 100.0 3.1E-32 6.7E-37 269.6 21.2 341 9-386 469-853 (3738)
6 KOG0783 Uncharacterized conser 100.0 5.8E-29 1.2E-33 238.2 15.5 308 27-360 131-451 (1267)
7 KOG0783 Uncharacterized conser 99.9 5.6E-24 1.2E-28 204.3 13.2 271 84-369 136-418 (1267)
8 KOG1428 Inhibitor of type V ad 99.9 2.8E-20 6.1E-25 185.8 18.8 284 63-356 561-892 (3738)
9 PF00415 RCC1: Regulator of ch 99.3 1.1E-11 2.3E-16 82.1 5.7 50 37-86 1-51 (51)
10 PF00415 RCC1: Regulator of ch 99.2 5.7E-12 1.2E-16 83.5 3.5 50 306-356 1-51 (51)
11 PF13540 RCC1_2: Regulator of 99.1 1.4E-10 3E-15 66.8 4.1 30 290-319 1-30 (30)
12 PF13540 RCC1_2: Regulator of 99.1 1.4E-10 3.1E-15 66.8 4.1 30 179-208 1-30 (30)
13 KOG0941 E3 ubiquitin protein l 98.9 2.7E-11 5.9E-16 118.7 -7.6 147 169-368 6-154 (850)
14 KOG0941 E3 ubiquitin protein l 98.7 1.9E-10 4.1E-15 112.9 -7.8 144 61-207 4-156 (850)
15 KOG3669 Uncharacterized conser 94.1 6.5 0.00014 38.7 20.4 70 72-147 228-299 (705)
16 KOG0646 WD40 repeat protein [G 94.1 4.9 0.00011 38.3 16.3 156 121-313 80-245 (476)
17 KOG3669 Uncharacterized conser 93.5 1.3 2.8E-05 43.4 11.7 108 78-201 190-299 (705)
18 PF11725 AvrE: Pathogenicity f 93.4 2.2 4.7E-05 47.2 14.5 62 290-364 705-769 (1774)
19 PF11725 AvrE: Pathogenicity f 92.8 1.5 3.3E-05 48.3 12.3 114 231-359 696-815 (1774)
20 KOG0291 WD40-repeat-containing 92.3 15 0.00032 37.6 21.8 275 36-369 317-604 (893)
21 KOG0943 Predicted ubiquitin-pr 92.0 0.012 2.6E-07 61.2 -4.0 134 124-269 375-509 (3015)
22 KOG0943 Predicted ubiquitin-pr 91.4 0.015 3.2E-07 60.6 -4.1 134 70-208 373-509 (3015)
23 KOG1900 Nuclear pore complex, 88.1 28 0.00061 38.0 16.3 207 84-314 93-339 (1311)
24 PF07569 Hira: TUP1-like enhan 87.0 3.9 8.5E-05 35.8 8.2 78 289-366 14-94 (219)
25 PF04841 Vps16_N: Vps16, N-ter 86.7 32 0.00069 33.3 19.5 70 71-149 81-154 (410)
26 KOG0291 WD40-repeat-containing 86.0 45 0.00097 34.3 24.1 106 35-150 105-219 (893)
27 PF07569 Hira: TUP1-like enhan 85.2 4.7 0.0001 35.3 7.8 79 121-202 11-93 (219)
28 TIGR01063 gyrA DNA gyrase, A s 85.0 57 0.0012 34.7 16.8 167 129-315 543-718 (800)
29 KOG0315 G-protein beta subunit 83.4 32 0.00069 30.5 18.0 111 123-266 84-198 (311)
30 PHA02713 hypothetical protein; 82.2 59 0.0013 32.9 15.3 20 79-98 341-360 (557)
31 PF04841 Vps16_N: Vps16, N-ter 81.9 52 0.0011 31.9 24.3 198 123-370 81-290 (410)
32 cd00200 WD40 WD40 domain, foun 81.6 34 0.00074 29.6 29.2 67 72-150 53-123 (289)
33 cd00200 WD40 WD40 domain, foun 81.6 34 0.00074 29.6 23.4 67 72-150 95-165 (289)
34 PHA02713 hypothetical protein; 81.4 14 0.00029 37.5 10.4 20 131-150 341-360 (557)
35 KOG4441 Proteins containing BT 81.3 46 0.001 33.8 14.1 104 249-366 420-530 (571)
36 KOG4693 Uncharacterized conser 81.1 41 0.00088 30.1 15.5 19 130-149 129-147 (392)
37 TIGR03300 assembly_YfgL outer 80.4 33 0.00071 32.5 12.4 56 248-312 321-376 (377)
38 smart00706 TECPR Beta propelle 74.9 6.3 0.00014 23.0 3.6 25 123-147 8-33 (35)
39 KOG0293 WD40 repeat-containing 73.7 86 0.0019 30.0 15.6 27 239-265 442-470 (519)
40 KOG0293 WD40 repeat-containing 73.7 86 0.0019 30.0 13.8 70 121-203 394-469 (519)
41 KOG4441 Proteins containing BT 73.3 23 0.0005 35.9 9.4 162 78-264 369-530 (571)
42 PRK13979 DNA topoisomerase IV 73.3 1.4E+02 0.0031 32.4 23.9 134 69-211 550-696 (957)
43 KOG2280 Vacuolar assembly/sort 72.1 1.3E+02 0.0028 31.3 16.1 78 288-378 217-298 (829)
44 smart00706 TECPR Beta propelle 71.2 8.9 0.00019 22.3 3.6 25 71-95 8-33 (35)
45 KOG1408 WD40 repeat protein [F 70.8 1E+02 0.0022 31.8 12.5 26 124-149 219-248 (1080)
46 PF06433 Me-amine-dh_H: Methyl 70.5 14 0.00031 34.3 6.5 176 179-365 30-211 (342)
47 PLN02153 epithiospecifier prot 69.6 98 0.0021 28.9 14.9 17 188-204 307-323 (341)
48 PF12341 DUF3639: Protein of u 68.4 14 0.0003 20.4 3.6 25 70-94 1-25 (27)
49 PHA03098 kelch-like protein; P 67.9 1.4E+02 0.003 29.9 14.1 15 84-98 289-303 (534)
50 KOG0646 WD40 repeat protein [G 67.8 1.2E+02 0.0026 29.3 18.5 99 72-187 83-185 (476)
51 PRK13979 DNA topoisomerase IV 66.5 2E+02 0.0043 31.3 16.9 124 129-271 560-695 (957)
52 KOG1274 WD40 repeat protein [G 64.7 2E+02 0.0042 30.6 21.9 67 81-149 16-85 (933)
53 PRK05560 DNA gyrase subunit A; 64.1 2.1E+02 0.0045 30.6 21.5 167 129-315 545-721 (805)
54 KOG0315 G-protein beta subunit 61.7 1.2E+02 0.0026 27.1 19.0 61 247-316 136-198 (311)
55 KOG0649 WD40 repeat protein [G 59.9 78 0.0017 28.1 8.5 118 243-364 18-141 (325)
56 PRK05560 DNA gyrase subunit A; 58.6 2.6E+02 0.0055 29.9 20.7 223 70-317 536-774 (805)
57 KOG1900 Nuclear pore complex, 58.3 1.9E+02 0.004 32.1 12.5 65 136-204 93-157 (1311)
58 TIGR01063 gyrA DNA gyrase, A s 56.7 2.7E+02 0.0059 29.7 22.0 221 70-316 534-770 (800)
59 KOG0307 Vesicle coat complex C 55.6 39 0.00084 36.2 7.1 36 179-214 256-294 (1049)
60 PF07250 Glyoxal_oxid_N: Glyox 54.4 51 0.0011 29.3 6.8 77 75-151 113-190 (243)
61 PLN02153 epithiospecifier prot 54.1 1.9E+02 0.0041 27.0 17.5 17 351-367 244-260 (341)
62 PHA02790 Kelch-like protein; P 53.1 2E+02 0.0042 28.5 11.5 14 302-315 442-455 (480)
63 PRK14131 N-acetylneuraminic ac 52.5 2.1E+02 0.0046 27.1 15.2 15 301-315 338-352 (376)
64 PF04762 IKI3: IKI3 family; I 51.9 3.5E+02 0.0076 29.5 21.9 48 248-315 592-639 (928)
65 PRK11138 outer membrane biogen 49.9 2.4E+02 0.0051 26.9 12.2 18 296-313 375-392 (394)
66 KOG0282 mRNA splicing factor [ 48.7 2.7E+02 0.0058 27.2 13.0 25 343-367 435-462 (503)
67 KOG1408 WD40 repeat protein [F 47.0 3.6E+02 0.0077 28.1 15.7 102 76-202 138-247 (1080)
68 KOG0278 Serine/threonine kinas 46.5 2.2E+02 0.0047 25.5 12.6 38 113-150 134-173 (334)
69 PF03785 Peptidase_C25_C: Pept 46.0 27 0.00058 25.0 3.0 42 279-320 7-49 (81)
70 KOG1240 Protein kinase contain 46.0 3.5E+02 0.0075 30.1 12.1 120 72-203 1050-1180(1431)
71 KOG1034 Transcriptional repres 45.4 30 0.00065 31.9 3.9 63 27-97 318-382 (385)
72 PF06739 SBBP: Beta-propeller 43.9 28 0.00062 20.8 2.5 18 187-204 15-32 (38)
73 PHA02790 Kelch-like protein; P 43.9 1.1E+02 0.0024 30.3 8.1 19 132-150 353-371 (480)
74 KOG1240 Protein kinase contain 43.6 4.9E+02 0.011 29.0 12.7 110 27-150 1060-1181(1431)
75 PHA03098 kelch-like protein; P 43.4 2.1E+02 0.0046 28.6 10.3 15 85-99 338-352 (534)
76 KOG2280 Vacuolar assembly/sort 41.1 4.5E+02 0.0097 27.6 15.9 70 238-316 217-288 (829)
77 COG5308 NUP170 Nuclear pore co 40.9 4.3E+02 0.0094 28.4 11.5 223 84-331 96-359 (1263)
78 TIGR03548 mutarot_permut cycli 40.6 3E+02 0.0064 25.4 12.3 18 188-205 216-233 (323)
79 COG4257 Vgb Streptogramin lyas 40.3 2.9E+02 0.0063 25.2 10.3 139 28-201 63-205 (353)
80 KOG0296 Angio-associated migra 39.5 3.3E+02 0.0072 25.7 23.1 73 71-155 107-183 (399)
81 PF07646 Kelch_2: Kelch motif; 37.5 34 0.00074 21.5 2.4 17 351-367 4-20 (49)
82 KOG1034 Transcriptional repres 37.5 90 0.002 28.9 5.7 56 191-263 324-381 (385)
83 TIGR03548 mutarot_permut cycli 36.3 3.5E+02 0.0075 24.9 12.6 18 299-316 216-233 (323)
84 PF13964 Kelch_6: Kelch motif 34.9 40 0.00087 21.1 2.4 20 350-369 3-22 (50)
85 TIGR02658 TTQ_MADH_Hv methylam 32.7 4.4E+02 0.0094 25.0 13.8 73 179-263 40-123 (352)
86 PF07250 Glyoxal_oxid_N: Glyox 32.3 3.6E+02 0.0079 24.0 12.8 71 246-316 118-190 (243)
87 PLN03215 ascorbic acid mannose 32.2 2.1E+02 0.0045 27.3 7.5 62 178-263 161-225 (373)
88 PF13854 Kelch_5: Kelch motif 30.5 55 0.0012 19.8 2.4 18 350-367 6-23 (42)
89 PF13418 Kelch_4: Galactose ox 30.3 55 0.0012 20.3 2.4 17 187-203 4-20 (49)
90 KOG4693 Uncharacterized conser 27.7 2E+02 0.0043 26.0 6.0 63 296-366 79-147 (392)
91 COG4257 Vgb Streptogramin lyas 27.3 4.9E+02 0.011 23.8 10.3 140 79-262 62-205 (353)
92 PF01436 NHL: NHL repeat; Int 27.1 1.2E+02 0.0025 16.5 3.3 17 188-204 5-21 (28)
93 KOG0282 mRNA splicing factor [ 26.7 6.2E+02 0.014 24.9 17.5 69 27-96 226-296 (503)
94 PF14517 Tachylectin: Tachylec 26.5 4.5E+02 0.0097 23.2 9.8 24 124-147 131-155 (229)
95 KOG0289 mRNA splicing factor [ 26.5 1.6E+02 0.0035 28.4 5.5 65 297-364 349-416 (506)
96 PF03785 Peptidase_C25_C: Pept 25.7 1.6E+02 0.0034 21.2 4.1 39 115-154 9-48 (81)
97 TIGR01062 parC_Gneg DNA topois 24.6 8.5E+02 0.019 25.7 17.5 157 78-266 492-655 (735)
98 TIGR01062 parC_Gneg DNA topois 24.4 8.6E+02 0.019 25.7 14.3 161 130-322 492-661 (735)
99 KOG1274 WD40 repeat protein [G 24.0 9.2E+02 0.02 25.9 21.5 57 36-94 24-80 (933)
100 PF13938 DUF4213: Domain of un 23.4 1.1E+02 0.0024 22.0 3.3 24 68-91 9-32 (87)
101 PLN00181 protein SPA1-RELATED; 23.0 9.2E+02 0.02 25.6 31.3 67 72-150 534-606 (793)
102 PF11399 DUF3192: Protein of u 22.2 67 0.0015 24.2 1.9 24 296-319 78-101 (102)
103 PLN03215 ascorbic acid mannose 22.1 4.1E+02 0.0089 25.4 7.5 62 124-202 161-225 (373)
104 PF11399 DUF3192: Protein of u 21.9 72 0.0016 24.0 2.0 23 186-208 79-101 (102)
105 TIGR01061 parC_Gpos DNA topois 21.7 9.7E+02 0.021 25.4 15.6 166 126-308 536-709 (738)
106 TIGR03547 muta_rot_YjhT mutatr 21.6 3.5E+02 0.0076 25.1 7.2 17 188-204 314-330 (346)
107 KOG0278 Serine/threonine kinas 21.4 6E+02 0.013 22.8 13.1 40 58-98 132-173 (334)
108 PF07312 DUF1459: Protein of u 21.4 88 0.0019 22.2 2.2 11 358-368 55-66 (84)
109 PF00167 FGF: Fibroblast growt 21.2 3.9E+02 0.0084 20.5 9.6 65 73-147 2-66 (122)
110 PF06204 CBM_X: Putative carbo 21.1 2.9E+02 0.0062 18.9 4.9 30 122-151 24-53 (66)
111 PF04025 DUF370: Domain of unk 20.8 1.6E+02 0.0035 20.7 3.4 28 69-96 35-63 (73)
No 1
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=4.4e-50 Score=365.76 Aligned_cols=333 Identities=29% Similarity=0.493 Sum_probs=272.2
Q ss_pred ccccceEEEEEEcCCCCCcCCCCCCCe-eeeeeeccc--cCCceeEEEeCCCeeEEEecCCcEEEEecCCCeeccCCC--
Q 016197 33 STLQRRFAALWGNGDYGRLGLGSLESR-WRPVVCSAF--EKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISE-- 107 (393)
Q Consensus 33 ~~~~~~~v~~wG~n~~g~lG~~~~~~~-~~p~~~~~~--~~~~I~~I~~G~~~~~~lt~~G~v~~wG~n~~g~lg~~~-- 107 (393)
....-..||+||+|..++||++..+.. ..|+..++. +...|++++||..|+++|++||.||+||.|..|+||...
T Consensus 63 ~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr~~~~ 142 (476)
T COG5184 63 LLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHK 142 (476)
T ss_pred hhhheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCccccccccccc
Confidence 334678899999999999999987765 889998887 667899999999999999999999999999999999765
Q ss_pred -------------CCCceecceEeccC-----CCcEEEEEcCCceEEEEecCCcEEEEecCCCCCCCCCCCCCccc----
Q 016197 108 -------------NIGYSLEPLRISGL-----KKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVI---- 165 (393)
Q Consensus 108 -------------~~~~~~~p~~i~~~-----~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~---- 165 (393)
......+|.+++.. +.+|++++||++++++++++|+||.||....+.++.+...++.-
T Consensus 143 ~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~ 222 (476)
T COG5184 143 DICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQ 222 (476)
T ss_pred ccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccccccccccceee
Confidence 22234677777741 33799999999999999999999999999998888875444322
Q ss_pred ccCeEeccCCCceEEEEecCCceEEEEeCCCcEEEEeCCCCCCCCCCCCCCccccccccccccceeeccccCccEEEEEe
Q 016197 166 PIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAA 245 (393)
Q Consensus 166 ~~~~~~~~~~~~~i~~i~~g~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~ 245 (393)
.+|.++. ...|+++++|.+|.++|+++|++|.||.+..+|||......+.. ....|+. +.-..|..|+|
T Consensus 223 ~~p~~v~---~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~-----~~lv~~~---f~i~~i~~vac 291 (476)
T COG5184 223 FTPLKVP---KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKL-----VVLVGDP---FAIRNIKYVAC 291 (476)
T ss_pred eeeeecC---chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhccc-----ccccCCh---hhhhhhhhccc
Confidence 4444444 45699999999999999999999999999999999988644321 1111221 22224888999
Q ss_pred CCceeEEEecCCcEEEEeCCCCCccccCCCC----CcCCCccccCCCC--cceEEeeCceeEEEEcCCCEEEEeCCCCCC
Q 016197 246 GFLHSACIDENGRVYIFGDRAVDKMLFQEGN----HARRPSLISKLPY--SEEVVCGGYHTCVLTSGGELYTWGSNENGC 319 (393)
Q Consensus 246 g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~----~~~~p~~i~~~~~--v~~v~~g~~~~~~lt~~g~v~~~G~n~~gq 319 (393)
|.+|+++|+++|++|+||.|.++|++.++.. ....|+....... |..++++..|+++|..+|.||.||.++.+|
T Consensus 292 G~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~q 371 (476)
T COG5184 292 GKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQ 371 (476)
T ss_pred CcceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCcccc
Confidence 9999999999999999999999999998321 2334444444444 899999999999999999999999999999
Q ss_pred CCCCC--CCCccCceeecCCCCCCCeEEEEeCCCceEEEE-CCcEEEEecCCCCCCcccCCCCCCCCCCCCCCCC
Q 016197 320 LGIGS--IDVLHSPERVQGPFSESPVDQVSCGWKHTAAIS-EGKILTWGWGGSHGTFSEDGHSSGGQLDRGQLTP 391 (393)
Q Consensus 320 lG~g~--~~~~~~p~~v~~~~~~~~i~~i~~G~~~t~~l~-~g~v~~wG~~~~~~~~~~~~~n~~gqlg~g~~~~ 391 (393)
||..+ ......|.++.. ..++.+++||..|+++.+ +|+||.||+ |.|||||.|....
T Consensus 372 lg~~~~~~~~~~~~~~ls~---~~~~~~v~~gt~~~~~~t~~gsvy~wG~------------ge~gnlG~g~~~~ 431 (476)
T COG5184 372 LGIQEEITIDVSTPTKLSV---AIKLEQVACGTHHNIARTDDGSVYSWGW------------GEHGNLGNGPKEA 431 (476)
T ss_pred ccCcccceeecCCcccccc---ccceEEEEecCccceeeccCCceEEecC------------chhhhccCCchhh
Confidence 99988 666666776663 237999999999999999 999999999 6999999987543
No 2
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=1.3e-42 Score=316.86 Aligned_cols=329 Identities=27% Similarity=0.415 Sum_probs=264.7
Q ss_pred hccccceeeeEeeeccccceEEEEEEcCCCCCcCCCCC----------------CCeeeeeeeccc----cCCceeEEEe
Q 016197 19 KLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSL----------------ESRWRPVVCSAF----EKHSLKALAC 78 (393)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~v~~wG~n~~g~lG~~~~----------------~~~~~p~~~~~~----~~~~I~~I~~ 78 (393)
.++.+++..|+..+. .|+.||.||.|..|+||.-.. +....|..++.. ...+|++++|
T Consensus 106 i~~~acGg~hsl~ld--~Dg~lyswG~N~~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~c 183 (476)
T COG5184 106 IIKIACGGNHSLGLD--HDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLAC 183 (476)
T ss_pred eEEeecCCceEEeec--CCCCEEEeccCcccccccccccccccccccccccchhhcccCCceeeccccccCChheEEeec
Confidence 344555656776665 799999999999999998651 124577777762 2347999999
Q ss_pred CCCeeEEEecCCcEEEEecCCCeeccCCCCCC-----ceecceEeccCCCcEEEEEcCCceEEEEecCCcEEEEecCCCC
Q 016197 79 GGAHTLFLTETGCVYATGLNDFGQLGISENIG-----YSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNG 153 (393)
Q Consensus 79 G~~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~-----~~~~p~~i~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~g 153 (393)
|+.++++|+++|+||.||.+..+.++.+.... ...+|.+++ .+.|+++++|.+|.++|+++|++|.||+|..|
T Consensus 184 g~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~--~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkg 261 (476)
T COG5184 184 GWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVP--KKAIVQLAAGADHLIALTNEGKVYGWGSNQKG 261 (476)
T ss_pred CCceEEEEccCCcEEEecCccccccccccccccccceeeeeeeecC--chheeeeccCCceEEEEecCCcEEEecCCccc
Confidence 99999999999999999998888877663221 234555554 56999999999999999999999999999999
Q ss_pred CCCCCCCCCcccccCeEeccCCCceEEEEecCCceEEEEeCCCcEEEEeCCCCCCCCCCCCCCccccccccccccceeec
Q 016197 154 QLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIK 233 (393)
Q Consensus 154 qlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~ 233 (393)
|||....+......+. -..+.-..|+.|+||.+|+++|+++|+||+||.|.++||+.++..+. ......|....
T Consensus 262 qlG~~~~e~~~~~~lv-~~~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~-----~a~~tk~~~~~ 335 (476)
T COG5184 262 QLGRPTSERLKLVVLV-GDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEI-----GALTTKPNYKQ 335 (476)
T ss_pred ccCCchhhhccccccc-CChhhhhhhhhcccCcceEEEEcCCCeEEEeccchhcccccCccccc-----ceeeccccccc
Confidence 9998887753222221 11222223889999999999999999999999999999999943211 12334455555
Q ss_pred cccCccEEEEEeCCceeEEEecCCcEEEEeCCCCCccccCC--CCCcCCCccccCCCCcceEEeeCceeEEEEcCCCEEE
Q 016197 234 ELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQE--GNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYT 311 (393)
Q Consensus 234 ~~~~~~i~~i~~g~~~~~~lt~~G~vy~wG~n~~gqlg~~~--~~~~~~p~~i~~~~~v~~v~~g~~~~~~lt~~g~v~~ 311 (393)
.+....|..++++..|+++|..+|.||.||.+..+|||..+ ......|+++....++.+++||..|.++.+.+|.||.
T Consensus 336 ~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls~~~~~~~v~~gt~~~~~~t~~gsvy~ 415 (476)
T COG5184 336 LLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSVAIKLEQVACGTHHNIARTDDGSVYS 415 (476)
T ss_pred cCCCceEEEEecCcceEEEEecCceEEEecCCccccccCcccceeecCCccccccccceEEEEecCccceeeccCCceEE
Confidence 56666799999999999999999999999999999999988 6778888888888999999999999999999999999
Q ss_pred EeCCCCCCCCCCCC-CCccCceeecCC-CCCCCeEEEEeCCCceEEEE
Q 016197 312 WGSNENGCLGIGSI-DVLHSPERVQGP-FSESPVDQVSCGWKHTAAIS 357 (393)
Q Consensus 312 ~G~n~~gqlG~g~~-~~~~~p~~v~~~-~~~~~i~~i~~G~~~t~~l~ 357 (393)
||.+++||||.++. ..+..|+.+..+ ++...++..-||..++++..
T Consensus 416 wG~ge~gnlG~g~~~~~~~~pt~i~~~~~~~~~~i~~g~~~~~~v~~~ 463 (476)
T COG5184 416 WGWGEHGNLGNGPKEADVLVPTLIRQPLLSGHNIILAGYGNQFSVIEE 463 (476)
T ss_pred ecCchhhhccCCchhhhccccccccccccCCCceEEeccCcceEEEec
Confidence 99999999999865 456677777753 36778999999999888876
No 3
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=1.7e-40 Score=284.66 Aligned_cols=312 Identities=28% Similarity=0.444 Sum_probs=264.6
Q ss_pred eeEeeeccccceEEEEEEcCCCCCcCCCCCCCeeeeeeeccccCCceeEEEeCCCeeEEEecCCcEEEEecCCCeeccCC
Q 016197 27 CKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGIS 106 (393)
Q Consensus 27 ~~~~~~~~~~~~~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~I~~I~~G~~~~~~lt~~G~v~~wG~n~~g~lg~~ 106 (393)
.|+.++. -+++.|.||.|..||||.++...+..|+.+..+...+|++-++|++|+++|+++|++|.||.|.+||||++
T Consensus 68 aH~vli~--megk~~~wGRNekGQLGhgD~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlg 145 (443)
T KOG1427|consen 68 AHCVLID--MEGKCYTWGRNEKGQLGHGDMKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLG 145 (443)
T ss_pred hhEEEEe--cccceeecccCccCccCccchhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEeccccccccccc
Confidence 5555555 68999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred CCCCceecceEeccCCCcEEEEEcCCceEEEEecCCcEEEEecCCCCCCCCCCCCCc------------ccccCeEeccC
Q 016197 107 ENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAK------------VIPIPTKVECL 174 (393)
Q Consensus 107 ~~~~~~~~p~~i~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~------------~~~~~~~~~~~ 174 (393)
+.......|.++-....+|+.|+||.++++.|+..+.|...|.-.+||||+++...- .++.|..+..+
T Consensus 146 n~~~~v~s~~~~~~~~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~ 225 (443)
T KOG1427|consen 146 NAKNEVESTPLPCVVSDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASL 225 (443)
T ss_pred ccccccccCCCccccCccceeeccccceEEEeecccceeecCCccccccccCcchhhccccccceeeeecCCCccccccc
Confidence 877776666666556669999999999999999999999999999999998876432 24566777788
Q ss_pred CCceEEEEecCCceEEEEeCCCcEEEEeCCCCCCCCCCCCCCccccccccccccceeeccc--cCccEEEEEeCCceeEE
Q 016197 175 SGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKEL--EGVKVKIAAAGFLHSAC 252 (393)
Q Consensus 175 ~~~~i~~i~~g~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~--~~~~i~~i~~g~~~~~~ 252 (393)
....|++++||.+|+++++++++||+||-.-||+||+... ++...|+.++.+ ++..-..+.||+.++++
T Consensus 226 dgvqiv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaEq---------KDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~ 296 (443)
T KOG1427|consen 226 DGVQIVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQ---------KDEMVPRLIKVFDRNNRGPPNAILGYTGSLN 296 (443)
T ss_pred cceeeEEEeccCcceeeecCCccEEEeccccccccccccc---------hhhHHHHHHHHhcCCCCCCcceeeeccccee
Confidence 8999999999999999999999999999999999999886 777888888754 34567789999999999
Q ss_pred EecCCcEEEEeCCCCCccccCCCCCcCCCccccCCC--CcceEEeeCceeEEEEcCCCEEEEeCCCCCCCCCCC--CCCc
Q 016197 253 IDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLP--YSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGS--IDVL 328 (393)
Q Consensus 253 lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~--~v~~v~~g~~~~~~lt~~g~v~~~G~n~~gqlG~g~--~~~~ 328 (393)
+.+-|+||.||.+... .+..-.|+++-.+. ++..+.++..|.. +..|..+..||..-+|.++-+. .+..
T Consensus 297 v~e~G~Lf~~g~~k~~------ge~~mypkP~~dlsgwnl~~~~~~~~h~~-v~ad~s~i~wg~~~~g~~lggp~~Qkss 369 (443)
T KOG1427|consen 297 VAEGGQLFMWGKIKNN------GEDWMYPKPMMDLSGWNLRWMDSGSMHHF-VGADSSCISWGHAQYGELLGGPNGQKSS 369 (443)
T ss_pred ecccceeEEeeccccC------cccccCCCchhhcCCccCCCcCccceeee-ecccccccccccccccccccCccccccc
Confidence 9999999999988742 23333455555444 6899999999854 5567779999998777655542 3455
Q ss_pred cCceeecCCCCCCCeEEEEeCCCceEEEE
Q 016197 329 HSPERVQGPFSESPVDQVSCGWKHTAAIS 357 (393)
Q Consensus 329 ~~p~~v~~~~~~~~i~~i~~G~~~t~~l~ 357 (393)
..|.++.. +.+.+|.+|++|+.|+++|.
T Consensus 370 ~~Pk~v~~-l~~i~v~~VamGysHs~viv 397 (443)
T KOG1427|consen 370 AAPKKVDM-LEGIHVMGVAMGYSHSMVIV 397 (443)
T ss_pred cCccccch-hcceeccceeeccceEEEEE
Confidence 67888885 78889999999999999998
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=6.4e-39 Score=274.92 Aligned_cols=325 Identities=24% Similarity=0.376 Sum_probs=271.1
Q ss_pred cccceEEEEEEcCCCCCcCCCC---CCCeeeeeeeccccCCceeEEEeCC--CeeEEEecCCcEEEEecCCCeeccCCCC
Q 016197 34 TLQRRFAALWGNGDYGRLGLGS---LESRWRPVVCSAFEKHSLKALACGG--AHTLFLTETGCVYATGLNDFGQLGISEN 108 (393)
Q Consensus 34 ~~~~~~v~~wG~n~~g~lG~~~---~~~~~~p~~~~~~~~~~I~~I~~G~--~~~~~lt~~G~v~~wG~n~~g~lg~~~~ 108 (393)
+...+++..+|.-..-+.|..+ ..+...|.++..+.+.+|+-|+.|. .|+++|+-+|++|.||.|..||||.+ .
T Consensus 16 e~~~g~ml~~g~v~wd~tgkRd~~~~~NL~sphR~~~l~gv~iR~VasG~~aaH~vli~megk~~~wGRNekGQLGhg-D 94 (443)
T KOG1427|consen 16 EEKGGEMLFCGAVAWDITGKRDGAMEGNLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGHG-D 94 (443)
T ss_pred hcCCccEEEeccchhhhhcccccccccccccceeccccccceEEEEecccchhhEEEEecccceeecccCccCccCcc-c
Confidence 3456777778876665555543 3467899999999999999999875 48999999999999999999999999 4
Q ss_pred CCceecceEeccCCC-cEEEEEcCCceEEEEecCCcEEEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecCCc
Q 016197 109 IGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFE 187 (393)
Q Consensus 109 ~~~~~~p~~i~~~~~-~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~ 187 (393)
......|+.|+.|.+ +|++.+||++|+++|+++|++|.||.|.+||||.++........| +......+|+.|+||..
T Consensus 95 ~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~~v~s~~--~~~~~~~~v~~v~cga~ 172 (443)
T KOG1427|consen 95 MKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKNEVESTP--LPCVVSDEVTNVACGAD 172 (443)
T ss_pred hhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccccccccccccccccccCC--CccccCccceeeccccc
Confidence 444578899998877 999999999999999999999999999999999998776433333 22334457999999999
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCCCCCCCCccccc-----cccccccceeeccccCccEEEEEeCCceeEEEecCCcEEEE
Q 016197 188 QSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFL-----RSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIF 262 (393)
Q Consensus 188 ~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~-----~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G~vy~w 262 (393)
|++.|+..+.+..+|...|||||++....+.--. .-.....|..+..+.+..|++++||.+|+++++.+++||.|
T Consensus 173 ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvqiv~~acg~nhtvavd~nkrVysW 252 (443)
T KOG1427|consen 173 FTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQIVKVACGTNHTVAVDKNKRVYSW 252 (443)
T ss_pred eEEEeecccceeecCCccccccccCcchhhccccccceeeeecCCCccccccccceeeEEEeccCcceeeecCCccEEEe
Confidence 9999999999999999999999999876543110 01123446677788888999999999999999999999999
Q ss_pred eCCCCCccccCCCCCcCCCccccCCCC----cceEEeeCceeEEEEcCCCEEEEeCCCCCCCCCCCCCCccCceeecCCC
Q 016197 263 GDRAVDKMLFQEGNHARRPSLISKLPY----SEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPF 338 (393)
Q Consensus 263 G~n~~gqlg~~~~~~~~~p~~i~~~~~----v~~v~~g~~~~~~lt~~g~v~~~G~n~~gqlG~g~~~~~~~p~~v~~~~ 338 (393)
|-.-+|.||..+..+.-.|.+++..+. -.++.+|...++++.+-|.+|.||.+.. +.+....|.++- .+
T Consensus 253 GFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~------~ge~~mypkP~~-dl 325 (443)
T KOG1427|consen 253 GFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKIKN------NGEDWMYPKPMM-DL 325 (443)
T ss_pred ccccccccccccchhhHHHHHHHHhcCCCCCCcceeeecccceeecccceeEEeecccc------CcccccCCCchh-hc
Confidence 999999999999888888888886653 6789999999999999999999998763 445556777777 47
Q ss_pred CCCCeEEEEeCCCceEEEECCcEEEEecCC
Q 016197 339 SESPVDQVSCGWKHTAAISEGKILTWGWGG 368 (393)
Q Consensus 339 ~~~~i~~i~~G~~~t~~l~~g~v~~wG~~~ 368 (393)
...++..|.|+..|.++-.|.....||...
T Consensus 326 sgwnl~~~~~~~~h~~v~ad~s~i~wg~~~ 355 (443)
T KOG1427|consen 326 SGWNLRWMDSGSMHHFVGADSSCISWGHAQ 355 (443)
T ss_pred CCccCCCcCccceeeeeccccccccccccc
Confidence 888999999999999988899999999864
No 5
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-32 Score=269.59 Aligned_cols=341 Identities=21% Similarity=0.303 Sum_probs=254.3
Q ss_pred hhhhhhhhhhhccccceeeeEeeeccccceEEEEEEcCCCCCcCCCCCCCeeeeeeeccccCCceeEEEeCCCeeEEEec
Q 016197 9 MTKYYLKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTE 88 (393)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~I~~I~~G~~~~~~lt~ 88 (393)
+..|+++...++.+.+++.+.|.+..+++|+||+-|... ++|.......+...+++ .+|++|+.|-+..+++.-
T Consensus 469 L~e~L~~~~~~qtv~L~~~RE~A~iqa~sGKvYYaGn~t--~~Gl~e~G~nWmEL~l~----~~IVq~SVG~D~~~~~~~ 542 (3738)
T KOG1428|consen 469 LPEFLPANLHPQTVDLHFTREMAFIQARSGKVYYAGNGT--RFGLFETGNNWMELCLP----EPIVQISVGIDTIMFRSG 542 (3738)
T ss_pred chhhhccccCchheecccchhhhhhhhcCccEEEecCcc--EEeEEccCCceEEecCC----CceEEEEeccchhheeec
Confidence 456778888899999999999999999999999999654 77888778888877776 679999999999988876
Q ss_pred CCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcCCceEEEEecCCcEEEEecCCCCCCCCCCCCCcccccC
Q 016197 89 TGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIP 168 (393)
Q Consensus 89 ~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~ 168 (393)
-|+-|++-..+ .+......+.++.-+++|+++.+.....-+++++|+||+.|.... +.....
T Consensus 543 A~~G~I~~v~D--------~k~~~~~Rr~~P~n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm----------~~n~SS 604 (3738)
T KOG1428|consen 543 AGHGWIASVDD--------KKRNGRLRRLVPSNRRKIVHVCASGHVYGYVSENGKIFMGGLHTM----------RVNVSS 604 (3738)
T ss_pred cCcceEEeccC--------cccccchhhcCCCCcceeEEEeeeeEEEEEEccCCeEEeecceeE----------EecchH
Confidence 66655543332 222223334444455699999888877889999999999997642 122345
Q ss_pred eEeccCCCceEEEEecCCceEEEEeCCCcEEEEeCCCCCCCCCCCCCCccccccccccccceeecccc-----CccEEEE
Q 016197 169 TKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELE-----GVKVKIA 243 (393)
Q Consensus 169 ~~~~~~~~~~i~~i~~g~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~-----~~~i~~i 243 (393)
..+..+++..|.+++.|..|.++++++|+||.||.|+.+|+|+-...+....++......-+..+.-. +..-+..
T Consensus 605 qmln~L~~~~isslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa 684 (3738)
T KOG1428|consen 605 QMLNGLDNVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCA 684 (3738)
T ss_pred HHhhccccceeehhhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhh
Confidence 56778889999999999999999999999999999999999998766554444333333222222111 1122222
Q ss_pred EeCCcee----EE--EecCCcEEEEeCCCCCccccC------C---------------------CCCcCCCccccCCC--
Q 016197 244 AAGFLHS----AC--IDENGRVYIFGDRAVDKMLFQ------E---------------------GNHARRPSLISKLP-- 288 (393)
Q Consensus 244 ~~g~~~~----~~--lt~~G~vy~wG~n~~gqlg~~------~---------------------~~~~~~p~~i~~~~-- 288 (393)
.||.-.. +. -...|.+..+|.++.+.+-.+ + +.....|.++...+
T Consensus 685 ~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~ 764 (3738)
T KOG1428|consen 685 QCGLCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGP 764 (3738)
T ss_pred hcccccccccccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCC
Confidence 3332211 11 124677888888777655332 0 11122344443322
Q ss_pred ---CcceEEeeCceeEEEEcCCCEEEEeCCCCCCCCCCCCCCccCceeecCCCCCCCeEEEEeCCCceEEEE-CCcEEEE
Q 016197 289 ---YSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAIS-EGKILTW 364 (393)
Q Consensus 289 ---~v~~v~~g~~~~~~lt~~g~v~~~G~n~~gqlG~g~~~~~~~p~~v~~~~~~~~i~~i~~G~~~t~~l~-~g~v~~w 364 (393)
++.+|+||..|+++|.+|++||++|+|.+||||+|++.....|+.|.. +++..|++|++|.+||+++. ||+||++
T Consensus 765 Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~-~~~t~~vQVaAGSNHT~l~~~DGsVFTF 843 (3738)
T KOG1428|consen 765 HDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVIL-PSDTVIVQVAAGSNHTILRANDGSVFTF 843 (3738)
T ss_pred cceeEEEEeccCceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEc-CCCCceEEEecCCCceEEEecCCcEEEe
Confidence 388999999999999999999999999999999999999999999996 46778999999999999999 9999999
Q ss_pred ecCCCCCCcccCCCCCCCCCCC
Q 016197 365 GWGGSHGTFSEDGHSSGGQLDR 386 (393)
Q Consensus 365 G~~~~~~~~~~~~~n~~gqlg~ 386 (393)
|.. .+|||++
T Consensus 844 GaF------------~KGQL~R 853 (3738)
T KOG1428|consen 844 GAF------------GKGQLAR 853 (3738)
T ss_pred ccc------------cCccccC
Confidence 996 6888886
No 6
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.96 E-value=5.8e-29 Score=238.25 Aligned_cols=308 Identities=25% Similarity=0.357 Sum_probs=232.2
Q ss_pred eeEeeeccccceEEEEEEcCCCCCcCCCCCCCeeeeeeeccc--cCCceeEEEeCCCeeEEEecCCcEEEEecCCCeecc
Q 016197 27 CKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAF--EKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLG 104 (393)
Q Consensus 27 ~~~~~~~~~~~~~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~--~~~~I~~I~~G~~~~~~lt~~G~v~~wG~n~~g~lg 104 (393)
+.+........++||+||.|.+..||.|+......|..+..| .+.-+.||+.+..|++||++.|+||++|.+..|.||
T Consensus 131 ~~~i~~~~d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG 210 (1267)
T KOG0783|consen 131 SSTIHPVLDLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLG 210 (1267)
T ss_pred ccccccccCCccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccC
Confidence 334444445678899999999999999999999999999987 455678999999999999999999999999999999
Q ss_pred CCCCCCceecceEeccCCC-cEEEEEcCCceEEEEecCCcEEEEecCCCCCCCCCCCCCcccccCeEecc--CCCc-eEE
Q 016197 105 ISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVEC--LSGI-FTK 180 (393)
Q Consensus 105 ~~~~~~~~~~p~~i~~~~~-~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~--~~~~-~i~ 180 (393)
++ .+.+.+.|.+++.+.. ++.+|++...|+++||++|.||+||.|..+|||+.+.+.+ ...|..+.. +.+. .|+
T Consensus 211 ~g-deq~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~-~~~p~qI~a~r~kg~~~iI 288 (1267)
T KOG0783|consen 211 FG-DEQYNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELK-KDDPIQITARRIKGFKQII 288 (1267)
T ss_pred cC-cccccccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhh-cCchhhhhhHhhcchhhhh
Confidence 99 6777788989998654 9999999999999999999999999999999998776542 233433331 1122 599
Q ss_pred EEecCCceEEEEeCCCcEEEEeCCCCCCCCCCCCCCccccccccccccceeeccccCccEEEEEeCCceeEEEecCCcEE
Q 016197 181 QAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVY 260 (393)
Q Consensus 181 ~i~~g~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G~vy 260 (393)
.|++|..|+++-|+. .||+||.| .||||..+.. .....|+.+.. ....+..+.|....+++++.++.+|
T Consensus 289 gvaAg~~hsVawt~~-~VY~wGlN-~GQlGi~~n~--------~~Vt~Pr~l~~-~~~~v~~v~a~~~ATVc~~~~~~i~ 357 (1267)
T KOG0783|consen 289 GVAAGKSHSVAWTDT-DVYSWGLN-NGQLGISDNI--------SVVTTPRRLAG-LLSPVIHVVATTRATVCLLQNNSII 357 (1267)
T ss_pred hhhcccceeeeeecc-eEEEeccc-CceecCCCCC--------ceeecchhhcc-cccceEEEEecCccEEEEecCCcEE
Confidence 999999999999976 89999998 4899977763 34455544422 2337999999999999999999999
Q ss_pred EEeCCCCCccccCCCCCcCCCccccC------CCCcceEEeeCceeEEEEcCCCEEEEeCCCCCCCCCCCCCCccCceee
Q 016197 261 IFGDRAVDKMLFQEGNHARRPSLISK------LPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERV 334 (393)
Q Consensus 261 ~wG~n~~gqlg~~~~~~~~~p~~i~~------~~~v~~v~~g~~~~~~lt~~g~v~~~G~n~~gqlG~g~~~~~~~p~~v 334 (393)
++-+-..-.+... -.......+.. ..++.+..+.....+++|+-|+||.|-++.... ......|..+
T Consensus 358 ~~ady~~~k~~~n--~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~~-----~~c~ftp~r~ 430 (1267)
T KOG0783|consen 358 AFADYNQVKLPFN--VDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNSTR-----TSCKFTPLRI 430 (1267)
T ss_pred EEecccceecCcc--hhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCce-----eeeeccccee
Confidence 9865443222111 11111111111 024667777888889999999999999876311 1112233333
Q ss_pred cCCCCCCCeEEEEeCCCceEEEE-CCc
Q 016197 335 QGPFSESPVDQVSCGWKHTAAIS-EGK 360 (393)
Q Consensus 335 ~~~~~~~~i~~i~~G~~~t~~l~-~g~ 360 (393)
. .|.+|+--.+..++++ ||.
T Consensus 431 ~------~isdIa~~~N~~~~~t~dGc 451 (1267)
T KOG0783|consen 431 F------EISDIAWTANSLILCTRDGC 451 (1267)
T ss_pred e------ehhhhhhccceEEEEecCcc
Confidence 2 6678888888888888 993
No 7
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.91 E-value=5.6e-24 Score=204.29 Aligned_cols=271 Identities=24% Similarity=0.344 Sum_probs=207.0
Q ss_pred EEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCC---cEEEEEcCCceEEEEecCCcEEEEecCCCCCCCCCCC
Q 016197 84 LFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKK---EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKK 160 (393)
Q Consensus 84 ~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~---~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~ 160 (393)
.+++.-..||.||.|.+..||+++.... ..|..+.-+.. -+.+|..+..|++++++.|+||++|...-|-||+++.
T Consensus 136 ~~~d~pndvy~wG~N~N~tLGign~~~~-~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~gde 214 (1267)
T KOG0783|consen 136 PVLDLPNDVYGWGTNVNNTLGIGNGKEP-SSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFGDE 214 (1267)
T ss_pred cccCCccceeEecccccccccccCCCCC-CChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcCcc
Confidence 3556668899999999999999964443 55666654432 5778999999999999999999999999999999954
Q ss_pred CCcccccCeEeccCCCceEEEEecCCceEEEEeCCCcEEEEeCCCCCCCCCCCCCCccccccccccccceeeccc--cCc
Q 016197 161 AAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKEL--EGV 238 (393)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~i~~i~~g~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~--~~~ 238 (393)
. ....|++++.+...++.+|++...|+++||+.|-||+||.|-.+|||..+.. .....|.+|... .+.
T Consensus 215 q--~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~--------~~~~~p~qI~a~r~kg~ 284 (1267)
T KOG0783|consen 215 Q--YNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDE--------LKKDDPIQITARRIKGF 284 (1267)
T ss_pred c--ccccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCch--------hhcCchhhhhhHhhcch
Confidence 4 4788999999999999999999999999999999999999999999998863 344455555432 222
Q ss_pred -cEEEEEeCCceeEEEecCCcEEEEeCCCCCccccCCCC-CcCCCccc-cCCCCcceEEeeCceeEEEEcCCCEEEEeCC
Q 016197 239 -KVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGN-HARRPSLI-SKLPYSEEVVCGGYHTCVLTSGGELYTWGSN 315 (393)
Q Consensus 239 -~i~~i~~g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~-~~~~p~~i-~~~~~v~~v~~g~~~~~~lt~~g~v~~~G~n 315 (393)
.|+.+++|..|+++.+.. .||.||.|. ||+|..+.. ....|..+ ..+..|+.|.|...-|+.+++++.+|++-..
T Consensus 285 ~~iIgvaAg~~hsVawt~~-~VY~wGlN~-GQlGi~~n~~~Vt~Pr~l~~~~~~v~~v~a~~~ATVc~~~~~~i~~~ady 362 (1267)
T KOG0783|consen 285 KQIIGVAAGKSHSVAWTDT-DVYSWGLNN-GQLGISDNISVVTTPRRLAGLLSPVIHVVATTRATVCLLQNNSIIAFADY 362 (1267)
T ss_pred hhhhhhhcccceeeeeecc-eEEEecccC-ceecCCCCCceeecchhhcccccceEEEEecCccEEEEecCCcEEEEecc
Confidence 799999999999999866 699999996 999987643 35667444 3344599999999999999999999998865
Q ss_pred CCCCCCCCCCCCccCceeec-CCC--CCCCeEEEEeCCCceEEEE-CCcEEEEecCCC
Q 016197 316 ENGCLGIGSIDVLHSPERVQ-GPF--SESPVDQVSCGWKHTAAIS-EGKILTWGWGGS 369 (393)
Q Consensus 316 ~~gqlG~g~~~~~~~p~~v~-~~~--~~~~i~~i~~G~~~t~~l~-~g~v~~wG~~~~ 369 (393)
....+-.. .++.. ...|. .++ ...++++..+...-.++++ -|+||+|=++++
T Consensus 363 ~~~k~~~n-~~~lk-s~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns 418 (1267)
T KOG0783|consen 363 NQVKLPFN-VDFLK-SLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNS 418 (1267)
T ss_pred cceecCcc-hhccc-eeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCC
Confidence 44333221 00010 11111 111 1235667777777888899 999999998643
No 8
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.85 E-value=2.8e-20 Score=185.77 Aligned_cols=284 Identities=19% Similarity=0.269 Sum_probs=190.6
Q ss_pred eeeccccCCceeEEEeCCCeeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCC-cEEEEEcCCceEEEEecC
Q 016197 63 VVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVD 141 (393)
Q Consensus 63 ~~~~~~~~~~I~~I~~G~~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~-~i~~i~~g~~~~~~lt~~ 141 (393)
.++..-+.++|+.+.+...-.-++.++|++|+.|.... ........+.+++. -|.+++.|..|.++++.+
T Consensus 561 Rr~~P~n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm---------~~n~SSqmln~L~~~~isslAlGKsH~~av~rN 631 (3738)
T KOG1428|consen 561 RRLVPSNRRKIVHVCASGHVYGYVSENGKIFMGGLHTM---------RVNVSSQMLNGLDNVMISSLALGKSHGVAVTRN 631 (3738)
T ss_pred hhcCCCCcceeEEEeeeeEEEEEEccCCeEEeecceeE---------EecchHHHhhccccceeehhhccccceeEEEeC
Confidence 33444456778888776666678899999999986431 22233344555655 788899999999999999
Q ss_pred CcEEEEecCCCCCCCCCCCCCcccccCeE-------------eccCCCceEEEEecCCceEEEE------eCCCcEEEEe
Q 016197 142 GELYMWGKNSNGQLGLGKKAAKVIPIPTK-------------VECLSGIFTKQAALGFEQSVAV------TGGGKVLSWG 202 (393)
Q Consensus 142 G~vy~~G~n~~gqlg~~~~~~~~~~~~~~-------------~~~~~~~~i~~i~~g~~~s~~l------t~~G~v~~~G 202 (393)
|+||.||.|+.+|+|+-.+... ...|.. -..+.+...+...||.-..--+ ...|.+..+|
T Consensus 632 G~l~T~GlNN~~QCGRVEs~sT-t~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~~RP~G~mC~CG 710 (3738)
T KOG1428|consen 632 GHLFTWGLNNMNQCGRVESTST-TSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVACGRVPRPKGTMCHCG 710 (3738)
T ss_pred CeEEEEecCCcccccccccccc-cCCcccccceeecccCCccceeecCCcchhhhcccccccccccccCCCCCCcccccC
Confidence 9999999999999997554321 111111 0112233344444443322111 2356677777
Q ss_pred CCCCCCCCCCCCCCcccc-----------cccccccc-------ceeecc---ccCccEEEEEeCCceeEEEecCCcEEE
Q 016197 203 AGGSGRLGHGQESSILGF-----------LRSTSEYT-------PRLIKE---LEGVKVKIAAAGFLHSACIDENGRVYI 261 (393)
Q Consensus 203 ~n~~gqlg~~~~~~~~~~-----------~~~~~~~~-------p~~i~~---~~~~~i~~i~~g~~~~~~lt~~G~vy~ 261 (393)
....+.+-.+.-...-.. ........ |..+.. .-+.+++.++||..|+++|.+|++||.
T Consensus 711 ~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~sd~~VfT 790 (3738)
T KOG1428|consen 711 VGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLLASDRRVFT 790 (3738)
T ss_pred CCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEeccCceEEEEecCCcEEE
Confidence 666555443322111100 00011122 222221 124579999999999999999999999
Q ss_pred EeCCCCCccccCCCCCcCCCccccCCCC--cceEEeeCceeEEEEcCCCEEEEeCCCCCCCCCCCCC---CccCceeecC
Q 016197 262 FGDRAVDKMLFQEGNHARRPSLISKLPY--SEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSID---VLHSPERVQG 336 (393)
Q Consensus 262 wG~n~~gqlg~~~~~~~~~p~~i~~~~~--v~~v~~g~~~~~~lt~~g~v~~~G~n~~gqlG~g~~~---~~~~p~~v~~ 336 (393)
+|.|.+||||.++......|+++..+++ +.+|++|.+|++++..||.||++|.-..|||++...+ .-..|.++.+
T Consensus 791 FG~~~HGQLG~GDt~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL~RP~~e~~~WNA~Pe~v~~ 870 (3738)
T KOG1428|consen 791 FGSNCHGQLGVGDTLSKNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVFTFGAFGKGQLARPAGEKAGWNAIPEKVSG 870 (3738)
T ss_pred ecCCcccccCcCccccCCCcceEEcCCCCceEEEecCCCceEEEecCCcEEEeccccCccccCccccccccccCCCcCCC
Confidence 9999999999999999999999988887 8899999999999999999999999999999997432 3335667665
Q ss_pred C--CCCCCeEEEEeCCCceEEE
Q 016197 337 P--FSESPVDQVSCGWKHTAAI 356 (393)
Q Consensus 337 ~--~~~~~i~~i~~G~~~t~~l 356 (393)
. -.+.....|.+..+.+++-
T Consensus 871 ~G~~f~~~A~WIGAdGDss~i~ 892 (3738)
T KOG1428|consen 871 FGPGFNAFAGWIGADGDSSIIH 892 (3738)
T ss_pred CCccccccceeeccCCCcceee
Confidence 2 2334455666655555443
No 9
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.26 E-value=1.1e-11 Score=82.10 Aligned_cols=50 Identities=32% Similarity=0.531 Sum_probs=47.4
Q ss_pred ceEEEEEEcCCCCCcC-CCCCCCeeeeeeeccccCCceeEEEeCCCeeEEE
Q 016197 37 RRFAALWGNGDYGRLG-LGSLESRWRPVVCSAFEKHSLKALACGGAHTLFL 86 (393)
Q Consensus 37 ~~~v~~wG~n~~g~lG-~~~~~~~~~p~~~~~~~~~~I~~I~~G~~~~~~l 86 (393)
||.||+||.|.+|||| .+.......|+++..+.+.+|++|+||..|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6899999999999999 8888889999999999999999999999999987
No 10
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.24 E-value=5.7e-12 Score=83.46 Aligned_cols=50 Identities=40% Similarity=0.698 Sum_probs=45.8
Q ss_pred CCCEEEEeCCCCCCCC-CCCCCCccCceeecCCCCCCCeEEEEeCCCceEEE
Q 016197 306 GGELYTWGSNENGCLG-IGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAI 356 (393)
Q Consensus 306 ~g~v~~~G~n~~gqlG-~g~~~~~~~p~~v~~~~~~~~i~~i~~G~~~t~~l 356 (393)
||+||+||.|.+|||| .++......|+++.. +...+|++|+||.+|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~-~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPF-LSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGG-GTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECC-CCCCCEEEEEeCcceEEEC
Confidence 6999999999999999 888899999999996 4567999999999999986
No 11
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.09 E-value=1.4e-10 Score=66.83 Aligned_cols=30 Identities=57% Similarity=1.237 Sum_probs=25.9
Q ss_pred cceEEeeCceeEEEEcCCCEEEEeCCCCCC
Q 016197 290 SEEVVCGGYHTCVLTSGGELYTWGSNENGC 319 (393)
Q Consensus 290 v~~v~~g~~~~~~lt~~g~v~~~G~n~~gq 319 (393)
|++|++|.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 689999999999999999999999999988
No 12
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.09 E-value=1.4e-10 Score=66.77 Aligned_cols=30 Identities=33% Similarity=0.540 Sum_probs=25.9
Q ss_pred EEEEecCCceEEEEeCCCcEEEEeCCCCCC
Q 016197 179 TKQAALGFEQSVAVTGGGKVLSWGAGGSGR 208 (393)
Q Consensus 179 i~~i~~g~~~s~~lt~~G~v~~~G~n~~gq 208 (393)
|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999987
No 13
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=2.7e-11 Score=118.74 Aligned_cols=147 Identities=27% Similarity=0.441 Sum_probs=126.5
Q ss_pred eEeccCCCceEEEEecCCceEEEEeCCCcEEEEeCCCCCCCCCCCCCCccccccccccccceeeccccCccEEEEEeCCc
Q 016197 169 TKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFL 248 (393)
Q Consensus 169 ~~~~~~~~~~i~~i~~g~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~ 248 (393)
..+..+...++.+++||+.|.++++..|++++||.|.++|++++.. .....|+.++.+.+.....|++|.+
T Consensus 6 ~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~---------~~~~~p~~~~sl~g~p~a~v~~g~~ 76 (850)
T KOG0941|consen 6 RLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALY---------FPDAKPEPVESLKGVPLAQVSAGEA 76 (850)
T ss_pred HHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhcc---------CCCCCCccchhhcCCcHHHHhcCCC
Confidence 3344445557999999999999999999999999999999999943 2333389999999999999999999
Q ss_pred eeEEEecCCcEEEEeCCCCCccccCCCCCcCCCccccCCCCcceEEeeCceeEEEEcCCCEEEEeCCCCCCCCCCCCCCc
Q 016197 249 HSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVL 328 (393)
Q Consensus 249 ~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~v~~v~~g~~~~~~lt~~g~v~~~G~n~~gqlG~g~~~~~ 328 (393)
|++++.. |+++++..|.++++|...++|+|+....+.
T Consensus 77 hs~~lS~-------------------------------------------~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~ 113 (850)
T KOG0941|consen 77 HSFALSS-------------------------------------------HTVLLTDEGKVFSFGAGSTGQLGHSLTENE 113 (850)
T ss_pred cchhhhh-------------------------------------------chhhcchhccccccCCcccccccccccccc
Confidence 9999876 899999999999999999999999777777
Q ss_pred cCceeecCCCCCCCeEEEEeCCCceEEEE--CCcEEEEecCC
Q 016197 329 HSPERVQGPFSESPVDQVSCGWKHTAAIS--EGKILTWGWGG 368 (393)
Q Consensus 329 ~~p~~v~~~~~~~~i~~i~~G~~~t~~l~--~g~v~~wG~~~ 368 (393)
..|..+.. +-+..+.+|+||-.|+.++. -|++|..|.+.
T Consensus 114 ~~~~~v~e-~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~ 154 (850)
T KOG0941|consen 114 VLPLLVLE-LIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGA 154 (850)
T ss_pred cccHHHHH-HHhhhhHHHHHHHHHHHhhhhhhcceeecccCC
Confidence 77777774 56779999999999998888 79999999963
No 14
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=1.9e-10 Score=112.94 Aligned_cols=144 Identities=28% Similarity=0.438 Sum_probs=115.7
Q ss_pred eeeeeccccCCceeEEEeCCCeeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCC-cEEEEEcCCceEEEEe
Q 016197 61 RPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAIT 139 (393)
Q Consensus 61 ~p~~~~~~~~~~I~~I~~G~~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~-~i~~i~~g~~~~~~lt 139 (393)
.|..+..+..+.|.|++||..|+++++..|+++.||.|.++|++.+....... |.+++.+.. +..+|++|..|+++++
T Consensus 4 ~~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~-p~~~~sl~g~p~a~v~~g~~hs~~lS 82 (850)
T KOG0941|consen 4 APRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAK-PEPVESLKGVPLAQVSAGEAHSFALS 82 (850)
T ss_pred hhHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCC-CccchhhcCCcHHHHhcCCCcchhhh
Confidence 45555566667899999999999999999999999999999999884333333 777776655 8888999999887776
Q ss_pred c-------CCcEEEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecCCceEEEE-eCCCcEEEEeCCCCC
Q 016197 140 V-------DGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAV-TGGGKVLSWGAGGSG 207 (393)
Q Consensus 140 ~-------~G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~s~~l-t~~G~v~~~G~n~~g 207 (393)
. +|.++++|....+|++...... ...|..+...-...+..|+|+..|+.++ ..-|++|..|.+..|
T Consensus 83 ~~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~--~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sG 156 (850)
T KOG0941|consen 83 SHTVLLTDEGKVFSFGAGSTGQLGHSLTEN--EVLPLLVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASG 156 (850)
T ss_pred hchhhcchhccccccCCccccccccccccc--ccccHHHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCC
Confidence 6 9999999999999999854444 3445555555566799999999998886 456999999988776
No 15
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=94.09 E-value=6.5 Score=38.69 Aligned_cols=70 Identities=26% Similarity=0.331 Sum_probs=50.0
Q ss_pred ceeEEEeCC-CeeEEEecCCcEEE-EecCCCeeccCCCCCCceecceEeccCCCcEEEEEcCCceEEEEecCCcEEEE
Q 016197 72 SLKALACGG-AHTLFLTETGCVYA-TGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMW 147 (393)
Q Consensus 72 ~I~~I~~G~-~~~~~lt~~G~v~~-wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g~~~~~~lt~~G~vy~~ 147 (393)
.+.+|++|. .-..+++++|.|+. -|-....+.|. .-..+++|.... .++.|+.|..-.-+|+.+|++|.-
T Consensus 228 ~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~Gd--sWkdI~tP~~a~----~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 228 DLSQISAGPTGVVWAVTENGAVFYREGVSRQNPEGD--SWKDIVTPRQAL----EPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred ccceEeecCcceEEEEeeCCcEEEEecccccCCCCc--hhhhccCccccc----ceEEEEeccceEEEEecCCcEEEE
Confidence 589999999 67788999999764 34333333222 222344454433 499999999999999999999874
No 16
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=94.08 E-value=4.9 Score=38.33 Aligned_cols=156 Identities=13% Similarity=0.126 Sum_probs=76.4
Q ss_pred CCCcEEEEEcCCceEE--EEecCCcEEEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecCCceEEEE--eCCC
Q 016197 121 LKKEVVQISTGYHHSS--AITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAV--TGGG 196 (393)
Q Consensus 121 ~~~~i~~i~~g~~~~~--~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~s~~l--t~~G 196 (393)
+|.++..+++...-.+ +=+..|+||.|--++ |.| ..+ .-...++ |+.+...++-++++ .+||
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelss-G~L---------L~v--~~aHYQ~--ITcL~fs~dgs~iiTgskDg 145 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSS-GIL---------LNV--LSAHYQS--ITCLKFSDDGSHIITGSKDG 145 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEecc-ccH---------HHH--HHhhccc--eeEEEEeCCCcEEEecCCCc
Confidence 4557888877544433 335789999996543 111 000 0112222 55555555555555 4789
Q ss_pred cEEEEeCCCCCCCCCCCCCCccccccccccccceeecccc--CccEEEEEeCCce--eEEE--ecCCcEEEEeCCCCCcc
Q 016197 197 KVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELE--GVKVKIAAAGFLH--SACI--DENGRVYIFGDRAVDKM 270 (393)
Q Consensus 197 ~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~--~~~i~~i~~g~~~--~~~l--t~~G~vy~wG~n~~gql 270 (393)
.|.+|=.-.- ........|..+..+. ...|+++.+|..- +.++ .+|..+-.|--..
T Consensus 146 ~V~vW~l~~l--------------v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~---- 207 (476)
T KOG0646|consen 146 AVLVWLLTDL--------------VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL---- 207 (476)
T ss_pred cEEEEEEEee--------------cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecc----
Confidence 9999953221 1112222333343333 3468888877652 2222 2333344442211
Q ss_pred ccCCCCCcCCCccccCCCCcceEEeeCceeEEEEcCCCEEEEe
Q 016197 271 LFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWG 313 (393)
Q Consensus 271 g~~~~~~~~~p~~i~~~~~v~~v~~g~~~~~~lt~~g~v~~~G 313 (393)
.........+...+...+..+..++++=+++|++|..-
T Consensus 208 -----g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 208 -----GVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred -----ceeeEEEecCCcceeEEEcccccEEEecCCcceEEeee
Confidence 11111111111112344556777888888889888644
No 17
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=93.45 E-value=1.3 Score=43.37 Aligned_cols=108 Identities=19% Similarity=0.173 Sum_probs=68.5
Q ss_pred eCCCeeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcCC-ceEEEEecCCcEE-EEecCCCCCC
Q 016197 78 CGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY-HHSSAITVDGELY-MWGKNSNGQL 155 (393)
Q Consensus 78 ~G~~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g~-~~~~~lt~~G~vy-~~G~n~~gql 155 (393)
.|.....+|..+|.+|. +-|+....+....=..+. ...++.+|++|. .-..+++.+|.|+ --|....++.
T Consensus 190 ~g~~~awAI~s~Gd~y~-------RtGvs~~~P~GraW~~i~-~~t~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~ 261 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYL-------RTGVSVDRPCGRAWKVIC-PYTDLSQISAGPTGVVWAVTENGAVFYREGVSRQNPE 261 (705)
T ss_pred CCceEEEEEecCCcEEE-------eccccCCCCCCceeeecC-CCCccceEeecCcceEEEEeeCCcEEEEecccccCCC
Confidence 45556667788888875 233332222222222222 122789999998 7789999999875 4566555555
Q ss_pred CCCCCCCcccccCeEeccCCCceEEEEecCCceEEEEeCCCcEEEE
Q 016197 156 GLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSW 201 (393)
Q Consensus 156 g~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~s~~lt~~G~v~~~ 201 (393)
|.. -+..+.|.... .++.|+.|.....+|+++|.+|.=
T Consensus 262 Gds---WkdI~tP~~a~-----~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 262 GDS---WKDIVTPRQAL-----EPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred Cch---hhhccCccccc-----ceEEEEeccceEEEEecCCcEEEE
Confidence 421 11233333322 299999999999999999999863
No 18
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=93.45 E-value=2.2 Score=47.19 Aligned_cols=62 Identities=13% Similarity=0.209 Sum_probs=42.2
Q ss_pred cceEEe-eCceeEEEEcCCCEEEEeCCCCCCCCCCCCCCccCceeecCCCCCCCeEEEEeCCCce-EEEE-CCcEEEE
Q 016197 290 SEEVVC-GGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHT-AAIS-EGKILTW 364 (393)
Q Consensus 290 v~~v~~-g~~~~~~lt~~g~v~~~G~n~~gqlG~g~~~~~~~p~~v~~~~~~~~i~~i~~G~~~t-~~l~-~g~v~~w 364 (393)
|..++. +.+++++|++.|+|-..= . + -.|..+..+--..+|++++.-..|. ++++ +|++|.-
T Consensus 705 i~a~Avv~~~~fvald~qg~lt~h~--k-------~----g~p~~l~~~gl~G~ik~l~lD~~~nL~Alt~~G~Lf~~ 769 (1774)
T PF11725_consen 705 ITAFAVVNDNKFVALDDQGDLTAHQ--K-------P----GRPVPLSRPGLSGEIKDLALDEKQNLYALTSTGELFRL 769 (1774)
T ss_pred ceeEEEEcCCceEEeccCCcccccc--C-------C----CCCccCCCCCCCcchhheeeccccceeEecCCCceeec
Confidence 444443 667888899888876532 1 1 1155555433345899999999866 7888 9999973
No 19
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=92.81 E-value=1.5 Score=48.27 Aligned_cols=114 Identities=18% Similarity=0.191 Sum_probs=71.8
Q ss_pred eeccccCccEEEEEe-CCceeEEEecCCcEEEEeCCCCCccccCCCCCcCCCcccc--CCC-CcceEEeeCce-eEEEEc
Q 016197 231 LIKELEGVKVKIAAA-GFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLIS--KLP-YSEEVVCGGYH-TCVLTS 305 (393)
Q Consensus 231 ~i~~~~~~~i~~i~~-g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~--~~~-~v~~v~~g~~~-~~~lt~ 305 (393)
.+..+++..|..++. +.++++++++.|+|-..= . ... |..++ .+. +|+.++.-..| .+|+++
T Consensus 696 ~l~Gl~~~~i~a~Avv~~~~fvald~qg~lt~h~--k---------~g~--p~~l~~~gl~G~ik~l~lD~~~nL~Alt~ 762 (1774)
T PF11725_consen 696 ALEGLEDRVITAFAVVNDNKFVALDDQGDLTAHQ--K---------PGR--PVPLSRPGLSGEIKDLALDEKQNLYALTS 762 (1774)
T ss_pred cccCCCcCcceeEEEEcCCceEEeccCCcccccc--C---------CCC--CccCCCCCCCcchhheeeccccceeEecC
Confidence 344555556666554 678899999999886532 1 111 33333 233 59999998774 467999
Q ss_pred CCCEEEEeCCCCCCCCCCCCCCccCceeecCCCCCCCeEEEEeCCCceEEEE-CC
Q 016197 306 GGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAIS-EG 359 (393)
Q Consensus 306 ~g~v~~~G~n~~gqlG~g~~~~~~~p~~v~~~~~~~~i~~i~~G~~~t~~l~-~g 359 (393)
+|+||.--.-.-.+.-.++ ......+++..| .+.+|..+....+|...+. ++
T Consensus 763 ~G~Lf~~~k~~WQ~~~~~~-~~~~~W~~v~lP-~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 763 TGELFRLPKEAWQGNAEGD-QMAAKWQKVALP-DEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred CCceeecCHHHhhCcccCC-ccccCceeccCC-CCCchhhhhcCCCCceEEEecC
Confidence 9999975432211111111 112445666655 6779999999999998888 54
No 20
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=92.26 E-value=15 Score=37.55 Aligned_cols=275 Identities=16% Similarity=0.078 Sum_probs=132.2
Q ss_pred cceEEEEEEcCCCCCcCCCCCCC-eeeeeeeccccCCceeEEEeCCCeeEEE--ecCCcEEEEecCCCeeccCCCCCCce
Q 016197 36 QRRFAALWGNGDYGRLGLGSLES-RWRPVVCSAFEKHSLKALACGGAHTLFL--TETGCVYATGLNDFGQLGISENIGYS 112 (393)
Q Consensus 36 ~~~~v~~wG~n~~g~lG~~~~~~-~~~p~~~~~~~~~~I~~I~~G~~~~~~l--t~~G~v~~wG~n~~g~lg~~~~~~~~ 112 (393)
..|....+|...-|||..-+-.. .+.-.+--. -.+|..++-..+-.++. -+||+|=+|-..+.-++
T Consensus 317 ~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH--~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~--------- 385 (893)
T KOG0291|consen 317 STGDWIAFGCSKLGQLLVWEWQSESYVLKQQGH--SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCF--------- 385 (893)
T ss_pred ccCCEEEEcCCccceEEEEEeeccceeeecccc--ccceeeEEECCCCcEEEeccCCCcEEEEeccCceEE---------
Confidence 46778999988889988653211 111111100 12466777666654444 47888888865542221
Q ss_pred ecceEeccCCCcEEEEEcCCceEEEEecCCcEEEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecCCceEEEE
Q 016197 113 LEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAV 192 (393)
Q Consensus 113 ~~p~~i~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~s~~l 192 (393)
.+...-. ..-..++.+.-.+..+..+=||.|..|--+.+-.. +....|.++. ...+++
T Consensus 386 vTFteHt-s~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNf-------RTft~P~p~Q--------------fscvav 443 (893)
T KOG0291|consen 386 VTFTEHT-SGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNF-------RTFTSPEPIQ--------------FSCVAV 443 (893)
T ss_pred EEeccCC-CceEEEEEEecCCEEEEeecCCeEEeeeeccccee-------eeecCCCcee--------------eeEEEE
Confidence 1100000 01145556667777777788999999976543111 1111121111 234666
Q ss_pred eCCCcEEEEeCCCCCCCCCCCCCCccccccccccccceeeccccCccEEEEEeCC---ceeEEEecCCcEEEEeCCCCCc
Q 016197 193 TGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGF---LHSACIDENGRVYIFGDRAVDK 269 (393)
Q Consensus 193 t~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~---~~~~~lt~~G~vy~wG~n~~gq 269 (393)
+..|+|.+.|.-+.- ..+.+ ...+- ++.+|-.|. -+.+.+...|.+.+-|+=+..-
T Consensus 444 D~sGelV~AG~~d~F----------~IfvW--S~qTG---------qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTV 502 (893)
T KOG0291|consen 444 DPSGELVCAGAQDSF----------EIFVW--SVQTG---------QLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTV 502 (893)
T ss_pred cCCCCEEEeeccceE----------EEEEE--EeecC---------eeeehhcCCCCcceeeEEccccCeEEeccccceE
Confidence 777777777753320 00000 00111 222222222 1222233333333222111000
Q ss_pred -cccCCCCCcCCCccccCCCCcceEEee--CceeEEEEcCCCEEEEeCCCCCCCCCCCCCCccCceeecCCCCCCCeEE-
Q 016197 270 -MLFQEGNHARRPSLISKLPYSEEVVCG--GYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQ- 345 (393)
Q Consensus 270 -lg~~~~~~~~~p~~i~~~~~v~~v~~g--~~~~~~lt~~g~v~~~G~n~~gqlG~g~~~~~~~p~~v~~~~~~~~i~~- 345 (393)
+-. -......-..+....++..++.. ..-.++.|-||+|-.|-.++..|.|.-+...-..+-+.... .++.
T Consensus 503 RiW~-if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D----~~ta~ 577 (893)
T KOG0291|consen 503 RIWD-IFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETD----RITAE 577 (893)
T ss_pred EEEE-eeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccc----eeehh
Confidence 000 00011111223333467777766 67889999999999999999999965433222222222211 1111
Q ss_pred -EEe-CCCceEEEE-CCcEEEEecCCC
Q 016197 346 -VSC-GWKHTAAIS-EGKILTWGWGGS 369 (393)
Q Consensus 346 -i~~-G~~~t~~l~-~g~v~~wG~~~~ 369 (393)
-+- -...++.++ ||+...-|-.++
T Consensus 578 ~sa~~K~Ftti~ySaDG~~IlAgG~sn 604 (893)
T KOG0291|consen 578 NSAKGKTFTTICYSADGKCILAGGESN 604 (893)
T ss_pred hcccCCceEEEEEcCCCCEEEecCCcc
Confidence 122 234446666 777666665444
No 21
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=92.01 E-value=0.012 Score=61.22 Aligned_cols=134 Identities=18% Similarity=0.127 Sum_probs=88.0
Q ss_pred cEEEEEcCCceEEEEecCCcEEEEecCCCCCCCCCCCCCcccccCeEe-ccCCCceEEEEecCCceEEEEeCCCcEEEEe
Q 016197 124 EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKV-ECLSGIFTKQAALGFEQSVAVTGGGKVLSWG 202 (393)
Q Consensus 124 ~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~-~~~~~~~i~~i~~g~~~s~~lt~~G~v~~~G 202 (393)
+++.|-+-....++|..+|++|.|-....--+-..-...+....|..- ..+-+.+|+.+++..--.-++|++|+|.+|=
T Consensus 375 ~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlasWl 454 (3015)
T KOG0943|consen 375 KFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLASWL 454 (3015)
T ss_pred eeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhhHH
Confidence 889999999999999999999999876543332211222223334332 2456778999999999999999999999994
Q ss_pred CCCCCCCCCCCCCCccccccccccccceeeccccCccEEEEEeCCceeEEEecCCcEEEEeCCCCCc
Q 016197 203 AGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDK 269 (393)
Q Consensus 203 ~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G~vy~wG~n~~gq 269 (393)
+ .+|.+..-+ .....+.-....+..+++..|...|.++..+|..+|-||--...+
T Consensus 455 D----EcgagV~fk--------La~ea~Tkieed~~maVqd~~~adhlaAf~~dniihWcGiVPf~e 509 (3015)
T KOG0943|consen 455 D----ECGAGVAFK--------LAHEAQTKIEEDGEMAVQDHCCADHLAAFLEDNIIHWCGIVPFSE 509 (3015)
T ss_pred h----hhhhhhhhh--------hhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhceeeEEeeeeehh
Confidence 3 222222110 001111111223345666677788999999999999999655443
No 22
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=91.42 E-value=0.015 Score=60.63 Aligned_cols=134 Identities=13% Similarity=0.068 Sum_probs=89.3
Q ss_pred CCceeEEEeCCCeeEEEecCCcEEEEecCCCeeccCC---CCCCceecceEeccCCCcEEEEEcCCceEEEEecCCcEEE
Q 016197 70 KHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGIS---ENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYM 146 (393)
Q Consensus 70 ~~~I~~I~~G~~~~~~lt~~G~v~~wG~n~~g~lg~~---~~~~~~~~p~~i~~~~~~i~~i~~g~~~~~~lt~~G~vy~ 146 (393)
..+++.|.+-.+..++|..+|++|.|-....--+... ......+....+-.-.++|+.+++..-...++|++|+|.+
T Consensus 373 an~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlas 452 (3015)
T KOG0943|consen 373 ANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLAS 452 (3015)
T ss_pred CCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhh
Confidence 3567888888888999999999999987654333211 1112223333444345699999999999999999999999
Q ss_pred EecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecCCceEEEEeCCCcEEEEeCCCCCC
Q 016197 147 WGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGR 208 (393)
Q Consensus 147 ~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~s~~lt~~G~v~~~G~n~~gq 208 (393)
|=. ++|-+-... .....+.........+++..|...|.++...++-+|-||.-.+.+
T Consensus 453 WlD----EcgagV~fk-La~ea~Tkieed~~maVqd~~~adhlaAf~~dniihWcGiVPf~e 509 (3015)
T KOG0943|consen 453 WLD----ECGAGVAFK-LAHEAQTKIEEDGEMAVQDHCCADHLAAFLEDNIIHWCGIVPFSE 509 (3015)
T ss_pred HHh----hhhhhhhhh-hhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhceeeEEeeeeehh
Confidence 943 222222111 111112222344566888888999999999999999999755443
No 23
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.14 E-value=28 Score=38.00 Aligned_cols=207 Identities=14% Similarity=0.074 Sum_probs=96.6
Q ss_pred EEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEE-----c-----CCceEEEEecCCcEEEEecCCC-
Q 016197 84 LFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIS-----T-----GYHHSSAITVDGELYMWGKNSN- 152 (393)
Q Consensus 84 ~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~-----~-----g~~~~~~lt~~G~vy~~G~n~~- 152 (393)
+-+|-|+++|+|-.++.+++-.- .+++..|.+|. + -=.|.+++.+--+|+..|--..
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~------------d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~ 160 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEY------------DGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDE 160 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccc------------cchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEecc
Confidence 44788999999998875543221 11222222221 1 2357788888878988885321
Q ss_pred CCCCCCCCCCcccccCeEeccCCCceEEEEecCCceEEEEe-CCCcEEEE----eCCCCCC-CCCCC-CCCccccccccc
Q 016197 153 GQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVT-GGGKVLSW----GAGGSGR-LGHGQ-ESSILGFLRSTS 225 (393)
Q Consensus 153 gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~s~~lt-~~G~v~~~----G~n~~gq-lg~~~-~~~~~~~~~~~~ 225 (393)
.+.+.....+. .. ...++..|..|.+..+-=++++ ++|.||-. .++.+++ +..-. ..+ ...
T Consensus 161 ~~~~~~~f~~~-----~~-i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s------~ls 228 (1311)
T KOG1900|consen 161 FTGELSIFNTS-----FK-ISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKS------VLS 228 (1311)
T ss_pred ccCcccccccc-----ee-eecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchh------HHH
Confidence 11111111110 11 1223445665554444444444 44454422 1222222 11000 000 122
Q ss_pred cccceeeccc--cCccEEEEEeCCce--eEEEecCCcEEEEeCCCCCccccCCC-----------CCcCCCccccCCCCc
Q 016197 226 EYTPRLIKEL--EGVKVKIAAAGFLH--SACIDENGRVYIFGDRAVDKMLFQEG-----------NHARRPSLISKLPYS 290 (393)
Q Consensus 226 ~~~p~~i~~~--~~~~i~~i~~g~~~--~~~lt~~G~vy~wG~n~~gqlg~~~~-----------~~~~~p~~i~~~~~v 290 (393)
...|..+... ....|.+|...... .+++++.|.|-+|-....|.-+.-.. .....|..-+....|
T Consensus 229 ~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~~~~~s~f~~I 308 (1311)
T KOG1900|consen 229 SLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKNPLDDSVFFSI 308 (1311)
T ss_pred HhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCCccceeeeehhHHHHHHHhhhccccCCCccccee
Confidence 3344422222 24578888876655 46677788766665444443332100 001111111111123
Q ss_pred c------eEEeeCceeEEEEcCC-CEEEEeC
Q 016197 291 E------EVVCGGYHTCVLTSGG-ELYTWGS 314 (393)
Q Consensus 291 ~------~v~~g~~~~~~lt~~g-~v~~~G~ 314 (393)
. .-..-+-|.+|+|..| ++|.-|+
T Consensus 309 vsI~~l~~~es~~l~LvA~ts~GvRlYfs~s 339 (1311)
T KOG1900|consen 309 VSISPLSASESNDLHLVAITSTGVRLYFSTS 339 (1311)
T ss_pred EEecccCcccccceeEEEEecCCeEEEEecc
Confidence 3 3334567999999998 5776664
No 24
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.02 E-value=3.9 Score=35.76 Aligned_cols=78 Identities=19% Similarity=0.233 Sum_probs=43.9
Q ss_pred CcceEEeeCceeEEEEcCCCEEEEeCCCCCCCCCC-CCCCccCceeecCCCCCCCeEEEEeCCCceEEEE--CCcEEEEe
Q 016197 289 YSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIG-SIDVLHSPERVQGPFSESPVDQVSCGWKHTAAIS--EGKILTWG 365 (393)
Q Consensus 289 ~v~~v~~g~~~~~~lt~~g~v~~~G~n~~gqlG~g-~~~~~~~p~~v~~~~~~~~i~~i~~G~~~t~~l~--~g~v~~wG 365 (393)
.+..+.+-..+.+++|++|.+|+|--...-..-.. +...+-.+...........|+.+.-..+-.-+++ +|+.|+|=
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~ 93 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYS 93 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEec
Confidence 57778888999999999999999986553221111 1110100000000023446766665555553333 88887764
Q ss_pred c
Q 016197 366 W 366 (393)
Q Consensus 366 ~ 366 (393)
.
T Consensus 94 ~ 94 (219)
T PF07569_consen 94 P 94 (219)
T ss_pred c
Confidence 4
No 25
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=86.67 E-value=32 Score=33.30 Aligned_cols=70 Identities=13% Similarity=0.141 Sum_probs=39.9
Q ss_pred CceeEEEeCCC-eeEEEecCCcEEEEecCCCeeccCCCCCCceecceEe--ccC-CCcEEEEEcCCceEEEEecCCcEEE
Q 016197 71 HSLKALACGGA-HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRI--SGL-KKEVVQISTGYHHSSAITVDGELYM 146 (393)
Q Consensus 71 ~~I~~I~~G~~-~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i--~~~-~~~i~~i~~g~~~~~~lt~~G~vy~ 146 (393)
.+|+.+.-... .-++|.++|.+...-. .|.. ....+..+ ... +..+-.+..+..-.++|+.++++|.
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~--~G~~-------~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~ 151 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYDL--FGEF-------QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYV 151 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEeC--CCce-------eechhhhccccCcccccccccccCCCCEEEECCCCeEEE
Confidence 56776666444 5777889998877632 1211 00111111 111 1134444566677899999999999
Q ss_pred Eec
Q 016197 147 WGK 149 (393)
Q Consensus 147 ~G~ 149 (393)
.-.
T Consensus 152 v~n 154 (410)
T PF04841_consen 152 VNN 154 (410)
T ss_pred EeC
Confidence 843
No 26
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=85.95 E-value=45 Score=34.31 Aligned_cols=106 Identities=16% Similarity=0.168 Sum_probs=62.0
Q ss_pred ccceEEEEEEcCCCCCcCCCCCC--Ceeeeeeec---cccCCceeEEEeCCCeeEEEe--cCCcEEEEecCCCeeccCCC
Q 016197 35 LQRRFAALWGNGDYGRLGLGSLE--SRWRPVVCS---AFEKHSLKALACGGAHTLFLT--ETGCVYATGLNDFGQLGISE 107 (393)
Q Consensus 35 ~~~~~v~~wG~n~~g~lG~~~~~--~~~~p~~~~---~~~~~~I~~I~~G~~~~~~lt--~~G~v~~wG~n~~g~lg~~~ 107 (393)
+.+|.+++-|....=|.-..... +...|..+. ...-..|+.|.-..+.-++++ +|=.+.+|+.+..
T Consensus 105 SPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~------- 177 (893)
T KOG0291|consen 105 SPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGN------- 177 (893)
T ss_pred CCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccc-------
Confidence 46677777776655554332211 123332221 123356888888877766665 4456777776431
Q ss_pred CCCceecceEeccCCCcEEEEEc--CCceEEEEecCCcEEEEecC
Q 016197 108 NIGYSLEPLRISGLKKEVVQIST--GYHHSSAITVDGELYMWGKN 150 (393)
Q Consensus 108 ~~~~~~~p~~i~~~~~~i~~i~~--g~~~~~~lt~~G~vy~~G~n 150 (393)
....|..+..-...|+.-.. -..+.+-+.++|.+++|..+
T Consensus 178 ---k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~ 219 (893)
T KOG0291|consen 178 ---KNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCD 219 (893)
T ss_pred ---cccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEec
Confidence 11344455444446666544 45567889999999999987
No 27
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.23 E-value=4.7 Score=35.27 Aligned_cols=79 Identities=19% Similarity=0.226 Sum_probs=44.9
Q ss_pred CCCcEEEEEcCCceEEEEecCCcEEEEecCCCCCCCCCCCCCcccccCeE---eccCCCceEEEEecCCc-eEEEEeCCC
Q 016197 121 LKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTK---VECLSGIFTKQAALGFE-QSVAVTGGG 196 (393)
Q Consensus 121 ~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~~~---~~~~~~~~i~~i~~g~~-~s~~lt~~G 196 (393)
++.++..+.|-..+.+++|++|.+|+|--...-.+ +...+. .+.-.. ........|+.+....+ .-++...+|
T Consensus 11 Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~-~~~~Si--~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng 87 (219)
T PF07569_consen 11 LGSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAV-LPPVSI--APLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNG 87 (219)
T ss_pred cCCceEEEEeCCCEEEEEeCCCeEEEEECCCCeec-cCCccH--HHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 45688889999999999999999999975432111 111000 000000 00023344655554433 345556778
Q ss_pred cEEEEe
Q 016197 197 KVLSWG 202 (393)
Q Consensus 197 ~v~~~G 202 (393)
+.|+|-
T Consensus 88 ~~y~y~ 93 (219)
T PF07569_consen 88 DSYSYS 93 (219)
T ss_pred CEEEec
Confidence 888874
No 28
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=84.96 E-value=57 Score=34.65 Aligned_cols=167 Identities=13% Similarity=-0.039 Sum_probs=84.0
Q ss_pred EcCCceEEEEecCCcEEEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecC-----CceEEEEeCCCcEEEEeC
Q 016197 129 STGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG-----FEQSVAVTGGGKVLSWGA 203 (393)
Q Consensus 129 ~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g-----~~~s~~lt~~G~v~~~G~ 203 (393)
+...++.+++|+.|++|..-...--..+. ...-.+....+....+.+|+.+.+- ....+++|++|.+.-.-.
T Consensus 543 ~~t~d~LllfTs~Grv~~l~~~~IP~~~r---~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l 619 (800)
T TIGR01063 543 ASTHDYLLFFTNRGKVYWLKVYQIPEASR---TAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSL 619 (800)
T ss_pred ecCCCeEEEEeCCCcEEEEEhhhCcCCCc---CCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEh
Confidence 34667789999999999985433222211 1111122222334455667766652 235788899998876644
Q ss_pred CCCCCCCCCCCCCccccccccccccceeeccccCccEEEEEe--CCceeEEEecCCcEEEEeCCCCCccccCCCCCcCCC
Q 016197 204 GGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAA--GFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRP 281 (393)
Q Consensus 204 n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~--g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p 281 (393)
..+...... ....+..-++..++.+.. ..+..+++|++|++|.+-...-...+...... ..
T Consensus 620 ~~~~~~~r~---------------G~~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv--~~ 682 (800)
T TIGR01063 620 TEFSNIRSN---------------GIIAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGV--RG 682 (800)
T ss_pred HHhhhhccC---------------CcccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCe--ec
Confidence 333111000 000011011223443332 34568999999999987554432222211110 01
Q ss_pred ccccCCCCcceEEee--CceeEEEEcCCCEEEEeCC
Q 016197 282 SLISKLPYSEEVVCG--GYHTCVLTSGGELYTWGSN 315 (393)
Q Consensus 282 ~~i~~~~~v~~v~~g--~~~~~~lt~~g~v~~~G~n 315 (393)
..+...+.|+.+..- ..+.+++|++|.+.-.=..
T Consensus 683 i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~ 718 (800)
T TIGR01063 683 IKLKNEDFVVSLLVVSEESYLLIVTENGYGKRTSIE 718 (800)
T ss_pred ccCCCCCEEEEEEEeccccEEEEEecCCcEEEEEHH
Confidence 122222335544432 3357778888877665443
No 29
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=83.38 E-value=32 Score=30.49 Aligned_cols=111 Identities=15% Similarity=0.191 Sum_probs=58.7
Q ss_pred CcEEEEE--cCCceEEEEecCCcEEEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecCCceEEEEeCCCcEEE
Q 016197 123 KEVVQIS--TGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLS 200 (393)
Q Consensus 123 ~~i~~i~--~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~s~~lt~~G~v~~ 200 (393)
++|..|. |-.+-.+-=.+||.+-.|--.. ...++.........-+-+.-...+.+.-+.+|.|++
T Consensus 84 kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~-------------~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irv 150 (311)
T KOG0315|consen 84 KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS-------------LSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRV 150 (311)
T ss_pred CceEEEEEeecCeEEEecCCCceEEEEeccC-------------cccchhccCCCCcceEEecCCcceEEeecCCCcEEE
Confidence 3555543 3444455556777777775432 111111222222223334445566677788999999
Q ss_pred EeCCCCCCCCCCCCCCccccccccccccceeeccccCccEEEEEeCC--ceeEEEecCCcEEEEeCCC
Q 016197 201 WGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGF--LHSACIDENGRVYIFGDRA 266 (393)
Q Consensus 201 ~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~--~~~~~lt~~G~vy~wG~n~ 266 (393)
|....... .....|.. ...|.++.... ...++.++.|+.|+|-.-.
T Consensus 151 WDl~~~~c---------------~~~liPe~-----~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 151 WDLGENSC---------------THELIPED-----DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLN 198 (311)
T ss_pred EEccCCcc---------------ccccCCCC-----CcceeeEEEcCCCcEEEEecCCccEEEEEccC
Confidence 96533210 11111211 12466666554 4557788999999996543
No 30
>PHA02713 hypothetical protein; Provisional
Probab=82.16 E-value=59 Score=32.93 Aligned_cols=20 Identities=15% Similarity=0.160 Sum_probs=14.5
Q ss_pred CCCeeEEEecCCcEEEEecC
Q 016197 79 GGAHTLFLTETGCVYATGLN 98 (393)
Q Consensus 79 G~~~~~~lt~~G~v~~wG~n 98 (393)
.+.+..+..-+|+||++|-.
T Consensus 341 ~R~~~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 341 NRCRFSLAVIDDTIYAIGGQ 360 (557)
T ss_pred hhhceeEEEECCEEEEECCc
Confidence 44455566678999999964
No 31
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=81.91 E-value=52 Score=31.86 Aligned_cols=198 Identities=15% Similarity=0.183 Sum_probs=94.9
Q ss_pred CcEEEEEc-CCceEEEEecCCcEEEEecCCCCCCCCCCCCCcccccCeEe--ccCCCceEEEEecCCceEEEEeCCCcEE
Q 016197 123 KEVVQIST-GYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKV--ECLSGIFTKQAALGFEQSVAVTGGGKVL 199 (393)
Q Consensus 123 ~~i~~i~~-g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~--~~~~~~~i~~i~~g~~~s~~lt~~G~v~ 199 (393)
.+|+.+.- -....+++.++|.++.... +|.. . ...+..+ ....+.++-.+..+.+-.++||.++++|
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~--~G~~---~-----fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~ 150 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYDL--FGEF---Q-----FSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFY 150 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEeC--CCce---e-----echhhhccccCcccccccccccCCCCEEEECCCCeEE
Confidence 47777664 5667899999998887632 2322 0 0111111 1112223444455656688999999999
Q ss_pred EEeCCCCCC-CCCCCCCCccccccccccccceeecc---ccCc-cEEEEEeCCceeEEEecCCcEEEEeCCCCCccccCC
Q 016197 200 SWGAGGSGR-LGHGQESSILGFLRSTSEYTPRLIKE---LEGV-KVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQE 274 (393)
Q Consensus 200 ~~G~n~~gq-lg~~~~~~~~~~~~~~~~~~p~~i~~---~~~~-~i~~i~~g~~~~~~lt~~G~vy~wG~n~~gqlg~~~ 274 (393)
..=...... +..-+ ..|..... .... .+.........-+.+..++.++..-.+...+
T Consensus 151 ~v~n~~~~~~~~~~~-------------~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~----- 212 (410)
T PF04841_consen 151 VVNNIDEPVKLRRLP-------------EIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ----- 212 (410)
T ss_pred EEeCccccchhhccc-------------cCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc-----
Confidence 873322110 00000 11111110 1110 1211222222223333444555432222111
Q ss_pred CCCcCCCccccCCCCcceEEee--CceeEEEEcCCCEEEEeCCCCCCCCCCCCCCccCceeecCCCCCCCeEEE-EeCCC
Q 016197 275 GNHARRPSLISKLPYSEEVVCG--GYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQV-SCGWK 351 (393)
Q Consensus 275 ~~~~~~p~~i~~~~~v~~v~~g--~~~~~~lt~~g~v~~~G~n~~gqlG~g~~~~~~~p~~v~~~~~~~~i~~i-~~G~~ 351 (393)
+.....+.+|+.. ..+.++++++|++|..-. +..+. ..++... .....++| .||..
T Consensus 213 ---------i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ss-Df~~~----------~~e~~~~-~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 213 ---------IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSS-DFSEK----------LCEFDTD-SKSPPKQMAWCGND 271 (410)
T ss_pred ---------ccCCCCeEEEEECCCCCEEEEEECCCCEEEEEC-cccce----------eEEeecC-cCCCCcEEEEECCC
Confidence 2223356776665 457777889999998543 22110 1111111 11233344 67774
Q ss_pred ceEEEE-CCcEEEEecCCCC
Q 016197 352 HTAAIS-EGKILTWGWGGSH 370 (393)
Q Consensus 352 ~t~~l~-~g~v~~wG~~~~~ 370 (393)
++++. +..|...|..+..
T Consensus 272 -av~l~~~~~l~lvg~~~~~ 290 (410)
T PF04841_consen 272 -AVVLSWEDELLLVGPDGDS 290 (410)
T ss_pred -cEEEEeCCEEEEECCCCCc
Confidence 66666 8899999986554
No 32
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=81.63 E-value=34 Score=29.61 Aligned_cols=67 Identities=9% Similarity=0.048 Sum_probs=35.6
Q ss_pred ceeEEEeCCC--eeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcCCc-eEEEEec-CCcEEEE
Q 016197 72 SLKALACGGA--HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYH-HSSAITV-DGELYMW 147 (393)
Q Consensus 72 ~I~~I~~G~~--~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g~~-~~~~lt~-~G~vy~~ 147 (393)
.+..+..... +.++...+|.+++|-.... .....+......|..+..... ..++... +|.|+.|
T Consensus 53 ~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ 120 (289)
T cd00200 53 PVRDVAASADGTYLASGSSDKTIRLWDLETG------------ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120 (289)
T ss_pred ceeEEEECCCCCEEEEEcCCCeEEEEEcCcc------------cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEE
Confidence 3445544433 4555566899999865421 111122222235666665443 3444444 8899998
Q ss_pred ecC
Q 016197 148 GKN 150 (393)
Q Consensus 148 G~n 150 (393)
-..
T Consensus 121 ~~~ 123 (289)
T cd00200 121 DVE 123 (289)
T ss_pred ECC
Confidence 654
No 33
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=81.62 E-value=34 Score=29.61 Aligned_cols=67 Identities=12% Similarity=0.085 Sum_probs=34.9
Q ss_pred ceeEEEeCCC-eeEEEec-CCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcCC-ceEEEEec-CCcEEEE
Q 016197 72 SLKALACGGA-HTLFLTE-TGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY-HHSSAITV-DGELYMW 147 (393)
Q Consensus 72 ~I~~I~~G~~-~~~~lt~-~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g~-~~~~~lt~-~G~vy~~ 147 (393)
.|..+..... ..++... +|+++.|-..... ....+......|..+.... ...++... +|.|+.|
T Consensus 95 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~ 162 (289)
T cd00200 95 YVSSVAFSPDGRILSSSSRDKTIKVWDVETGK------------CLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162 (289)
T ss_pred cEEEEEEcCCCCEEEEecCCCeEEEEECCCcE------------EEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEE
Confidence 5666666554 2333333 8889988654211 1111112233566665544 33333333 8889888
Q ss_pred ecC
Q 016197 148 GKN 150 (393)
Q Consensus 148 G~n 150 (393)
-..
T Consensus 163 d~~ 165 (289)
T cd00200 163 DLR 165 (289)
T ss_pred Ecc
Confidence 653
No 34
>PHA02713 hypothetical protein; Provisional
Probab=81.38 E-value=14 Score=37.48 Aligned_cols=20 Identities=20% Similarity=0.292 Sum_probs=14.0
Q ss_pred CCceEEEEecCCcEEEEecC
Q 016197 131 GYHHSSAITVDGELYMWGKN 150 (393)
Q Consensus 131 g~~~~~~lt~~G~vy~~G~n 150 (393)
...+..+..-+|+||++|-.
T Consensus 341 ~R~~~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 341 NRCRFSLAVIDDTIYAIGGQ 360 (557)
T ss_pred hhhceeEEEECCEEEEECCc
Confidence 44445556667899999974
No 35
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=81.32 E-value=46 Score=33.81 Aligned_cols=104 Identities=15% Similarity=0.167 Sum_probs=48.8
Q ss_pred eeEEEecCCcEEEEeCCCCCccccCC----CCCcCCCccccCCCCcceEEeeCceeEEEEcCCCEEEEeCCCCCCCCCCC
Q 016197 249 HSACIDENGRVYIFGDRAVDKMLFQE----GNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGS 324 (393)
Q Consensus 249 ~~~~lt~~G~vy~wG~n~~gqlg~~~----~~~~~~p~~i~~~~~v~~v~~g~~~~~~lt~~g~v~~~G~n~~gqlG~g~ 324 (393)
...+..-+|+||..|-.....--+.. .......+.++. +.....+..+.+-+++||+.|..+. +-....
T Consensus 420 ~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~------M~~~R~~~g~a~~~~~iYvvGG~~~-~~~~~~ 492 (571)
T KOG4441|consen 420 GHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAP------MNTRRSGFGVAVLNGKIYVVGGFDG-TSALSS 492 (571)
T ss_pred eeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCC------cccccccceEEEECCEEEEECCccC-CCccce
Confidence 34455668999999864433211110 011112222222 1112222225566899999997553 111100
Q ss_pred CCCccCceeecCCC-C-CCCeEEEEeCCCceEEEE-CCcEEEEec
Q 016197 325 IDVLHSPERVQGPF-S-ESPVDQVSCGWKHTAAIS-EGKILTWGW 366 (393)
Q Consensus 325 ~~~~~~p~~v~~~~-~-~~~i~~i~~G~~~t~~l~-~g~v~~wG~ 366 (393)
...-.|. . -..+..+...-.+.-+.. ++++|+-|-
T Consensus 493 -------VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 493 -------VERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred -------EEEEcCCCCceeEcccCccccccccEEEECCEEEEEec
Confidence 1111110 1 112233455556665555 999999986
No 36
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=81.09 E-value=41 Score=30.14 Aligned_cols=19 Identities=21% Similarity=0.485 Sum_probs=13.8
Q ss_pred cCCceEEEEecCCcEEEEec
Q 016197 130 TGYHHSSAITVDGELYMWGK 149 (393)
Q Consensus 130 ~g~~~~~~lt~~G~vy~~G~ 149 (393)
+-..|++++-.+ .+|.+|-
T Consensus 129 aRDGHsAcV~gn-~MyiFGG 147 (392)
T KOG4693|consen 129 ARDGHSACVWGN-QMYIFGG 147 (392)
T ss_pred ccCCceeeEECc-EEEEecC
Confidence 346678777776 6999984
No 37
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=80.37 E-value=33 Score=32.51 Aligned_cols=56 Identities=16% Similarity=0.089 Sum_probs=30.1
Q ss_pred ceeEEEecCCcEEEEeCCCCCccccCCCCCcCCCccccCCCCcceEEeeCceeEEEEcCCCEEEE
Q 016197 248 LHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTW 312 (393)
Q Consensus 248 ~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~v~~v~~g~~~~~~lt~~g~v~~~ 312 (393)
...++.+.+|.||++-... +++--. ..+....-...-...+.+.++.+.||+||++
T Consensus 321 ~~l~~~~~~G~l~~~d~~t-G~~~~~--------~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 321 GYLVVGDFEGYLHWLSRED-GSFVAR--------LKTDGSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEeCCCEEEEEECCC-CCEEEE--------EEcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence 4667778889999885433 221100 0000000111222334678889999999986
No 38
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=74.92 E-value=6.3 Score=22.96 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=22.3
Q ss_pred CcEEEEEcCC-ceEEEEecCCcEEEE
Q 016197 123 KEVVQISTGY-HHSSAITVDGELYMW 147 (393)
Q Consensus 123 ~~i~~i~~g~-~~~~~lt~~G~vy~~ 147 (393)
..+++|++|. +...+++.+|.||..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 5899999999 899999999999863
No 39
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=73.73 E-value=86 Score=29.97 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=20.4
Q ss_pred cEEEEEeCCceeEEE--ecCCcEEEEeCC
Q 016197 239 KVKIAAAGFLHSACI--DENGRVYIFGDR 265 (393)
Q Consensus 239 ~i~~i~~g~~~~~~l--t~~G~vy~wG~n 265 (393)
.|..-++|.+..++. .+|++||.|-.-
T Consensus 442 iIrSCFgg~~~~fiaSGSED~kvyIWhr~ 470 (519)
T KOG0293|consen 442 IIRSCFGGGNDKFIASGSEDSKVYIWHRI 470 (519)
T ss_pred EEEeccCCCCcceEEecCCCceEEEEEcc
Confidence 477778888766665 589999999543
No 40
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=73.66 E-value=86 Score=29.95 Aligned_cols=70 Identities=14% Similarity=0.174 Sum_probs=41.7
Q ss_pred CCCcEEEEEcCCceEEEE--ecCCcEEEEecCCCCCCCCCCCCCcccccCeEec--cCCCceEEEEecCCceEEEE--eC
Q 016197 121 LKKEVVQISTGYHHSSAI--TVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVE--CLSGIFTKQAALGFEQSVAV--TG 194 (393)
Q Consensus 121 ~~~~i~~i~~g~~~~~~l--t~~G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~--~~~~~~i~~i~~g~~~s~~l--t~ 194 (393)
...+|..++.+.+.-++| ..+.++..|-... ...+.+.. ......|.....|.+..++. ++
T Consensus 394 e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e-------------~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSE 460 (519)
T KOG0293|consen 394 EEQPITSFSISKDGKLALVNLQDQEIHLWDLEE-------------NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSE 460 (519)
T ss_pred ccCceeEEEEcCCCcEEEEEcccCeeEEeecch-------------hhHHHHhhcccccceEEEeccCCCCcceEEecCC
Confidence 445888887755554444 3467899995421 11111111 12233477777777766666 58
Q ss_pred CCcEEEEeC
Q 016197 195 GGKVLSWGA 203 (393)
Q Consensus 195 ~G~v~~~G~ 203 (393)
|++||.|-.
T Consensus 461 D~kvyIWhr 469 (519)
T KOG0293|consen 461 DSKVYIWHR 469 (519)
T ss_pred CceEEEEEc
Confidence 999999964
No 41
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=73.32 E-value=23 Score=35.90 Aligned_cols=162 Identities=16% Similarity=0.172 Sum_probs=71.2
Q ss_pred eCCCeeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcCCceEEEEecCCcEEEEecCCCCCCCC
Q 016197 78 CGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGL 157 (393)
Q Consensus 78 ~G~~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~ 157 (393)
..+....+..-+|.+|+-|--+ |.-....-+.+ .|..-. .. .+..+.-......+..-+|+||..|-.....--.
T Consensus 369 ~~R~~~~v~~l~g~iYavGG~d-g~~~l~svE~Y--Dp~~~~-W~-~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l 443 (571)
T KOG4441|consen 369 TKRSDFGVAVLDGKLYAVGGFD-GEKSLNSVECY--DPVTNK-WT-PVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCL 443 (571)
T ss_pred CccccceeEEECCEEEEEeccc-cccccccEEEe--cCCCCc-cc-ccCCCCcceeeeEEEEECCEEEEEcCcCCCcccc
Confidence 3445555667789999998544 11111111111 111000 00 2222333455566677788999998643221000
Q ss_pred CCCCCcccccCeEeccCCCceEEEEecCCceEEEEeCCCcEEEEeCCCCCCCCCCCCCCccccccccccccceeeccccC
Q 016197 158 GKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEG 237 (393)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~ 237 (393)
.+....-|............... .+.-+.+-+++||+.|-.+. ...... ...+.|+.-.-
T Consensus 444 -~sve~YDP~t~~W~~~~~M~~~R-----~~~g~a~~~~~iYvvGG~~~-~~~~~~----------VE~ydp~~~~W--- 503 (571)
T KOG4441|consen 444 -NSVECYDPETNTWTLIAPMNTRR-----SGFGVAVLNGKIYVVGGFDG-TSALSS----------VERYDPETNQW--- 503 (571)
T ss_pred -ceEEEEcCCCCceeecCCccccc-----ccceEEEECCEEEEECCccC-CCccce----------EEEEcCCCCce---
Confidence 00000111112222222211221 22225555789999986543 100000 11111111000
Q ss_pred ccEEEEEeCCceeEEEecCCcEEEEeC
Q 016197 238 VKVKIAAAGFLHSACIDENGRVYIFGD 264 (393)
Q Consensus 238 ~~i~~i~~g~~~~~~lt~~G~vy~wG~ 264 (393)
..+..+.....+.-+...++++|+-|-
T Consensus 504 ~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 504 TMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred eEcccCccccccccEEEECCEEEEEec
Confidence 012234445666667777899998886
No 42
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=73.30 E-value=1.4e+02 Score=32.36 Aligned_cols=134 Identities=13% Similarity=-0.031 Sum_probs=71.3
Q ss_pred cCCceeEEEeC--CCeeEEEecCCcEEEEecCCCeeccCCCCCCceecceE-eccCCCcEEEEEcCC-----ceEEEEec
Q 016197 69 EKHSLKALACG--GAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLR-ISGLKKEVVQISTGY-----HHSSAITV 140 (393)
Q Consensus 69 ~~~~I~~I~~G--~~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~-i~~~~~~i~~i~~g~-----~~~~~lt~ 140 (393)
++..+..+..+ .++.+++|+.|++|.--...-................. +..-.++|+.+.+-. .+.+++|+
T Consensus 550 e~D~i~~~~~~~T~d~LL~FTn~Gkvy~ikvy~IPe~~~~~~G~~I~nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~Tk 629 (957)
T PRK13979 550 EGDFNKFLIQSNTKDTLLIFTDKGNMYQIKGINIPEFKWKEKGERLDEIIKGIDLESEKIIEAYSIEDFTPQKDFIFITD 629 (957)
T ss_pred CCCceEEEEEEcCCCEEEEEECCCeEEEEEeeeCCCCCcCCCCeEHHHhhhccCCCCCeEEEEEEeccCCCCCEEEEEEC
Confidence 34455555444 44578889999999765433222111101111111110 111145777776643 24788999
Q ss_pred CCcEEEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecCC-----ceEEEEeCCCcEEEEeCCCCCCCCC
Q 016197 141 DGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGF-----EQSVAVTGGGKVLSWGAGGSGRLGH 211 (393)
Q Consensus 141 ~G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~-----~~s~~lt~~G~v~~~G~n~~gqlg~ 211 (393)
+|.+--.-...+- . ....-.-+...++..++.+.... .+.+++|++|.+.-+-.+.-..+|+
T Consensus 630 ~G~VKrt~L~ef~--------~-~r~~~~aikL~e~DeLV~v~~~~~~~~~~~Iil~Tk~G~airF~~~eVr~mGR 696 (957)
T PRK13979 630 SGGIKKTSLDKFV--------T-NYTKLMALKLKKGEKLIKVKLVDRTREEKFIKIKTKKGLSFTVEEPELEPVDR 696 (957)
T ss_pred CCeEEEEehhhcc--------c-cccceEEEEcCCCCEEEEEEEcCCCCCCCEEEEEeCCCcEEEEEHHHCcccCC
Confidence 9988776543221 1 01111223333455666655433 3578899999998887766555554
No 43
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.07 E-value=1.3e+02 Score=31.25 Aligned_cols=78 Identities=14% Similarity=0.166 Sum_probs=45.6
Q ss_pred CCcceEEee--CceeEEEEcCCCEEEEeCCCCCCCCCC-CCCCccCceeecCCCCCCCeEEEEeCCCceEEEE-CCcEEE
Q 016197 288 PYSEEVVCG--GYHTCVLTSGGELYTWGSNENGCLGIG-SIDVLHSPERVQGPFSESPVDQVSCGWKHTAAIS-EGKILT 363 (393)
Q Consensus 288 ~~v~~v~~g--~~~~~~lt~~g~v~~~G~n~~gqlG~g-~~~~~~~p~~v~~~~~~~~i~~i~~G~~~t~~l~-~g~v~~ 363 (393)
..+.+++.. ..|.+..|++|++|.--. +-.|.-.. +......|. .=..||.. ++++. +..+-.
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~-D~~~~lce~~~~~~~~p~-----------qm~Wcgnd-aVvl~~e~~l~l 283 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSI-DLSQILCEFNCTDHDPPK-----------QMAWCGND-AVVLSWEVNLML 283 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEec-chhhhhhccCCCCCCchH-----------hceeecCC-ceEEEEeeeEEE
Confidence 557776665 457778899999998433 21111110 101111111 22367766 77777 999999
Q ss_pred EecCCCCCCcccCCC
Q 016197 364 WGWGGSHGTFSEDGH 378 (393)
Q Consensus 364 wG~~~~~~~~~~~~~ 378 (393)
.|.++-+.+++-+.+
T Consensus 284 vgp~gd~V~f~yd~t 298 (829)
T KOG2280|consen 284 VGPPGDSVQFYYDET 298 (829)
T ss_pred EcCCCCccccccCCC
Confidence 999887776665543
No 44
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=71.17 E-value=8.9 Score=22.30 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=21.5
Q ss_pred CceeEEEeCC-CeeEEEecCCcEEEE
Q 016197 71 HSLKALACGG-AHTLFLTETGCVYAT 95 (393)
Q Consensus 71 ~~I~~I~~G~-~~~~~lt~~G~v~~w 95 (393)
..+++|++|. +...+++.+|++|..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 4689999999 888899999999863
No 45
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=70.82 E-value=1e+02 Score=31.81 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=23.1
Q ss_pred cEEEEEcCCc----eEEEEecCCcEEEEec
Q 016197 124 EVVQISTGYH----HSSAITVDGELYMWGK 149 (393)
Q Consensus 124 ~i~~i~~g~~----~~~~lt~~G~vy~~G~ 149 (393)
.+.+|+||.. .+++++..|.|.-+.+
T Consensus 219 ~f~avaCg~gicAestfait~qGhLvEFSs 248 (1080)
T KOG1408|consen 219 EFLAVACGVGICAESTFAITAQGHLVEFSS 248 (1080)
T ss_pred hhhhhhhcCcccccceEEEecccceeeech
Confidence 7899999988 8999999999988754
No 46
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=70.54 E-value=14 Score=34.33 Aligned_cols=176 Identities=15% Similarity=0.151 Sum_probs=81.4
Q ss_pred EEEEecCCceEEEEeCCCcEEEEeCCCCCCCCCCCCCCccccccccccccceeeccccCc-cEEEEEeCCceeEEEecCC
Q 016197 179 TKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGV-KVKIAAAGFLHSACIDENG 257 (393)
Q Consensus 179 i~~i~~g~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~-~i~~i~~g~~~~~~lt~~G 257 (393)
.=+|.+|...-++++.+|+.+..=.-.+.+..++....+...... ....|..=..++.+ +. ...-+.+.+.++.||
T Consensus 30 lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~-~TL~~~~EI~iP~k~R~--~~~~~~~~~~ls~dg 106 (342)
T PF06433_consen 30 LGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDT-QTLSPTGEIEIPPKPRA--QVVPYKNMFALSADG 106 (342)
T ss_dssp EEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEET-TTTEEEEEEEETTS-B----BS--GGGEEE-TTS
T ss_pred EEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEec-CcCcccceEecCCcchh--eecccccceEEccCC
Confidence 446778888888999888744332333444444443332222111 12222211122221 22 233577788998888
Q ss_pred c-EEEEeCCCCCccccCCCCCcCCCccccCCCCcceEEeeCceeEEEEcCCCEEEEeCCCCCCCCCCCCCCccCceeecC
Q 016197 258 R-VYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQG 336 (393)
Q Consensus 258 ~-vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~v~~v~~g~~~~~~lt~~g~v~~~G~n~~gqlG~g~~~~~~~p~~v~~ 336 (393)
+ +|.+--........-+......-..++....+.-.-.+......+-.||.+....-...|+-- ...+++..
T Consensus 107 k~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~-------~~~t~~F~ 179 (342)
T PF06433_consen 107 KFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEA-------QKSTKVFD 179 (342)
T ss_dssp SEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEE-------EEEEEESS
T ss_pred cEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEe-------EeeccccC
Confidence 6 556533221111111111111111111111222233455666788889999888877766542 12233333
Q ss_pred CCCCCCeE---EEEeCCCceEEEE-CCcEEEEe
Q 016197 337 PFSESPVD---QVSCGWKHTAAIS-EGKILTWG 365 (393)
Q Consensus 337 ~~~~~~i~---~i~~G~~~t~~l~-~g~v~~wG 365 (393)
+. ...+. .......+.+.++ +|+||.--
T Consensus 180 ~~-~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~d 211 (342)
T PF06433_consen 180 PD-DDPLFEHPAYSRDGGRLYFVSYEGNVYSAD 211 (342)
T ss_dssp TT-TS-B-S--EEETTTTEEEEEBTTSEEEEEE
T ss_pred CC-CcccccccceECCCCeEEEEecCCEEEEEe
Confidence 22 11222 2234556777788 99998743
No 47
>PLN02153 epithiospecifier protein
Probab=69.57 E-value=98 Score=28.89 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=12.1
Q ss_pred eEEEEeCCCcEEEEeCC
Q 016197 188 QSVAVTGGGKVLSWGAG 204 (393)
Q Consensus 188 ~s~~lt~~G~v~~~G~n 204 (393)
+++.+..+++||.+|--
T Consensus 307 ~~~~v~~~~~~~~~gG~ 323 (341)
T PLN02153 307 TTATVYGKNGLLMHGGK 323 (341)
T ss_pred cccccCCcceEEEEcCc
Confidence 35556667799999853
No 48
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=68.39 E-value=14 Score=20.37 Aligned_cols=25 Identities=20% Similarity=0.334 Sum_probs=20.9
Q ss_pred CCceeEEEeCCCeeEEEecCCcEEE
Q 016197 70 KHSLKALACGGAHTLFLTETGCVYA 94 (393)
Q Consensus 70 ~~~I~~I~~G~~~~~~lt~~G~v~~ 94 (393)
++.|..|++|..+.++.|+.+-|-+
T Consensus 1 gE~i~aia~g~~~vavaTS~~~lRi 25 (27)
T PF12341_consen 1 GEEIEAIAAGDSWVAVATSAGYLRI 25 (27)
T ss_pred CceEEEEEccCCEEEEEeCCCeEEe
Confidence 3579999999999999999886644
No 49
>PHA03098 kelch-like protein; Provisional
Probab=67.90 E-value=1.4e+02 Score=29.95 Aligned_cols=15 Identities=13% Similarity=0.018 Sum_probs=10.6
Q ss_pred EEEecCCcEEEEecC
Q 016197 84 LFLTETGCVYATGLN 98 (393)
Q Consensus 84 ~~lt~~G~v~~wG~n 98 (393)
.++.-++.+|+.|-.
T Consensus 289 ~~~~~~~~lyv~GG~ 303 (534)
T PHA03098 289 GSVVLNNVIYFIGGM 303 (534)
T ss_pred eEEEECCEEEEECCC
Confidence 345566789999853
No 50
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=67.84 E-value=1.2e+02 Score=29.31 Aligned_cols=99 Identities=16% Similarity=0.144 Sum_probs=51.8
Q ss_pred ceeEEEeCCCeeEEE--ecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcCCceEEEE--ecCCcEEEE
Q 016197 72 SLKALACGGAHTLFL--TETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAI--TVDGELYMW 147 (393)
Q Consensus 72 ~I~~I~~G~~~~~~l--t~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g~~~~~~l--t~~G~vy~~ 147 (393)
++..+++...-.+++ +..|++|+|=-++.--|-+ .-.. -+.|+.+....+...++ .+||.|.+|
T Consensus 83 ~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v--------~~aH----YQ~ITcL~fs~dgs~iiTgskDg~V~vW 150 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGTISGNLYLWELSSGILLNV--------LSAH----YQSITCLKFSDDGSHIITGSKDGAVLVW 150 (476)
T ss_pred ceeeeecCCCceEEEeecccCcEEEEEeccccHHHH--------HHhh----ccceeEEEEeCCCcEEEecCCCccEEEE
Confidence 466677665544443 5789999996543211100 0000 12677777666666555 468999999
Q ss_pred ecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecCCc
Q 016197 148 GKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFE 187 (393)
Q Consensus 148 G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~ 187 (393)
-.-+. -...+...+.|...-.--...|+++.+|..
T Consensus 151 ~l~~l-----v~a~~~~~~~p~~~f~~HtlsITDl~ig~G 185 (476)
T KOG0646|consen 151 LLTDL-----VSADNDHSVKPLHIFSDHTLSITDLQIGSG 185 (476)
T ss_pred EEEee-----cccccCCCccceeeeccCcceeEEEEecCC
Confidence 64221 111111233443333222345777777655
No 51
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=66.49 E-value=2e+02 Score=31.31 Aligned_cols=124 Identities=10% Similarity=-0.030 Sum_probs=67.2
Q ss_pred EcCCceEEEEecCCcEEEEecCCCCCCCCCCCCCcccccCeEec-c-CCCceEEEEecCCc-----eEEEEeCCCcEEEE
Q 016197 129 STGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVE-C-LSGIFTKQAALGFE-----QSVAVTGGGKVLSW 201 (393)
Q Consensus 129 ~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~-~-~~~~~i~~i~~g~~-----~s~~lt~~G~v~~~ 201 (393)
+...+..+++|+.|++|..-...--+... ...-.+....+. . ..+.+|+.+.+-.. +.+++|++|.|.-.
T Consensus 560 ~~T~d~LL~FTn~Gkvy~ikvy~IPe~~~---~~~G~~I~nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~Tk~G~VKrt 636 (957)
T PRK13979 560 SNTKDTLLIFTDKGNMYQIKGINIPEFKW---KEKGERLDEIIKGIDLESEKIIEAYSIEDFTPQKDFIFITDSGGIKKT 636 (957)
T ss_pred EcCCCEEEEEECCCeEEEEEeeeCCCCCc---CCCCeEHHHhhhccCCCCCeEEEEEEeccCCCCCEEEEEECCCeEEEE
Confidence 34667789999999999986644322211 111112222222 1 13556776666532 46888999998876
Q ss_pred eCCCCCCCCCCCCCCccccccccccccceeeccccCccEEEEEeCC-----ceeEEEecCCcEEEEeCCCCCccc
Q 016197 202 GAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGF-----LHSACIDENGRVYIFGDRAVDKML 271 (393)
Q Consensus 202 G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~-----~~~~~lt~~G~vy~wG~n~~gqlg 271 (393)
=...+.. ....-..+..-++..++.+.... .+.+++|++|.+..+-.+.-..+|
T Consensus 637 ~L~ef~~----------------~r~~~~aikL~e~DeLV~v~~~~~~~~~~~Iil~Tk~G~airF~~~eVr~mG 695 (957)
T PRK13979 637 SLDKFVT----------------NYTKLMALKLKKGEKLIKVKLVDRTREEKFIKIKTKKGLSFTVEEPELEPVD 695 (957)
T ss_pred ehhhccc----------------cccceEEEEcCCCCEEEEEEEcCCCCCCCEEEEEeCCCcEEEEEHHHCcccC
Confidence 4433210 00111122222334555554432 357889999988877655544443
No 52
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=64.67 E-value=2e+02 Score=30.55 Aligned_cols=67 Identities=13% Similarity=0.025 Sum_probs=38.6
Q ss_pred CeeEEEecCCc-EEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcCCceEEEEecCCcE--EEEec
Q 016197 81 AHTLFLTETGC-VYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGEL--YMWGK 149 (393)
Q Consensus 81 ~~~~~lt~~G~-v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g~~~~~~lt~~G~v--y~~G~ 149 (393)
...++++.+|+ |+++|.+..- -.-........|..+....+.|..|++-..+.+.-++++.| |.+++
T Consensus 16 ~t~i~~d~~gefi~tcgsdg~i--r~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGSDGDI--RKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred eEEEEEcCCCCEEEEecCCCce--EEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCC
Confidence 44555566665 4444443222 11112222245555554666899999988888888888755 55444
No 53
>PRK05560 DNA gyrase subunit A; Validated
Probab=64.11 E-value=2.1e+02 Score=30.61 Aligned_cols=167 Identities=13% Similarity=-0.033 Sum_probs=85.3
Q ss_pred EcCCceEEEEecCCcEEEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecCC-----ceEEEEeCCCcEEEEeC
Q 016197 129 STGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGF-----EQSVAVTGGGKVLSWGA 203 (393)
Q Consensus 129 ~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~-----~~s~~lt~~G~v~~~G~ 203 (393)
+...+..+++|+.|++|..-.+.--..+ ....-.+....+....+.+|+.+.+-. ...+++|++|.+.-.-.
T Consensus 545 ~~t~d~LllfTs~Grv~~l~v~~iP~~~---~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l 621 (805)
T PRK05560 545 ASTHDTLLFFTNRGRVYRLKVYEIPEAS---RTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSL 621 (805)
T ss_pred ecCCCeEEEEecCCeEEEEEhhhCcCCC---cCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEh
Confidence 4467778999999999998765332221 111111222223344566677776644 35788899998876543
Q ss_pred CCCCCCCCCCCCCccccccccccccceeeccccCccEEEEEe--CCceeEEEecCCcEEEEeCCCCCccccCCCCCcCCC
Q 016197 204 GGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAA--GFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRP 281 (393)
Q Consensus 204 n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~--g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p 281 (393)
..+-....+ ....+..-++..++.+.. ..+..+++|++|++|.+-...--..+..... . .-
T Consensus 622 ~~~~~~~r~---------------G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~G-v-~~ 684 (805)
T PRK05560 622 SEFSNIRSN---------------GIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTARG-V-RG 684 (805)
T ss_pred HHhhhcccC---------------CceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccCC-c-cc
Confidence 332111110 001111112234444333 3456899999999998754432222211110 0 00
Q ss_pred ccccCCCCcceEEeeC---ceeEEEEcCCCEEEEeCC
Q 016197 282 SLISKLPYSEEVVCGG---YHTCVLTSGGELYTWGSN 315 (393)
Q Consensus 282 ~~i~~~~~v~~v~~g~---~~~~~lt~~g~v~~~G~n 315 (393)
..+.....|..+.... .+.+++|++|.+.-.-.+
T Consensus 685 i~L~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~ 721 (805)
T PRK05560 685 IKLREGDEVVSMDVVREDSQEILTVTENGYGKRTPVS 721 (805)
T ss_pred ccCCCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHH
Confidence 1122222355544432 257788888876655433
No 54
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=61.70 E-value=1.2e+02 Score=27.06 Aligned_cols=61 Identities=11% Similarity=0.090 Sum_probs=35.7
Q ss_pred CceeEEEecCCcEEEEeCCCCCccccCCCCCcCCCccccCCCCcceEEeeCc--eeEEEEcCCCEEEEeCCC
Q 016197 247 FLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGY--HTCVLTSGGELYTWGSNE 316 (393)
Q Consensus 247 ~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~v~~v~~g~~--~~~~lt~~g~v~~~G~n~ 316 (393)
-.+.+.-+.+|.|+.|--..... .....|... ..|.++....+ ..++.++.|+.|+|-.-.
T Consensus 136 QteLis~dqsg~irvWDl~~~~c------~~~liPe~~---~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 136 QTELISGDQSGNIRVWDLGENSC------THELIPEDD---TSIQSLTVMPDGSMLAAANNKGNCYVWRLLN 198 (311)
T ss_pred cceEEeecCCCcEEEEEccCCcc------ccccCCCCC---cceeeEEEcCCCcEEEEecCCccEEEEEccC
Confidence 34455667889999996543210 111112111 23566665544 456788899999998644
No 55
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=59.87 E-value=78 Score=28.07 Aligned_cols=118 Identities=10% Similarity=0.011 Sum_probs=0.0
Q ss_pred EEeCCceeEEEecCCcEEEEeCCCCCccccCCCCCcCCCccccCCCC---cceEEeeCceeEEEEcCCCEEEEeCCCCCC
Q 016197 243 AAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPY---SEEVVCGGYHTCVLTSGGELYTWGSNENGC 319 (393)
Q Consensus 243 i~~g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~---v~~v~~g~~~~~~lt~~g~v~~~G~n~~gq 319 (393)
++-...+.++-...|++...--+. +-.+...+..+-..++.-.. |..+..-+.|.+.--. |.||+|=.|+.-.
T Consensus 18 ~sp~~~~l~agn~~G~iav~sl~s---l~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~~e 93 (325)
T KOG0649|consen 18 ISPSKQYLFAGNLFGDIAVLSLKS---LDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEEEE 93 (325)
T ss_pred hCCcceEEEEecCCCeEEEEEehh---hhccccCCCCCcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehhhhh
Q ss_pred -CCCCCCCCccCceee-cCCCCCCCeEEEEeCCCceEEEE-CCcEEEE
Q 016197 320 -LGIGSIDVLHSPERV-QGPFSESPVDQVSCGWKHTAAIS-EGKILTW 364 (393)
Q Consensus 320 -lG~g~~~~~~~p~~v-~~~~~~~~i~~i~~G~~~t~~l~-~g~v~~w 364 (393)
++....=....|..+ ..+.+.-+...+.--.+..+.-. |+.+|+|
T Consensus 94 s~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~ 141 (325)
T KOG0649|consen 94 SLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQV 141 (325)
T ss_pred hccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEE
No 56
>PRK05560 DNA gyrase subunit A; Validated
Probab=58.62 E-value=2.6e+02 Score=29.92 Aligned_cols=223 Identities=13% Similarity=0.003 Sum_probs=105.3
Q ss_pred CCceeEEEe--CCCeeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcCC-----ceEEEEecCC
Q 016197 70 KHSLKALAC--GGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY-----HHSSAITVDG 142 (393)
Q Consensus 70 ~~~I~~I~~--G~~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g~-----~~~~~lt~~G 142 (393)
+..+..+.. ..+..+++|+.|++|..-...-...+.............+. -.++|+.+.+-. ...+++|++|
T Consensus 536 ~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~~~~~G~~i~~ll~L~-~~E~Iv~~i~~~~~~~e~~lvlvTk~G 614 (805)
T PRK05560 536 DDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEASRTARGRPIVNLLPLE-PGEKITAILPVREFDDDKYLFFATKNG 614 (805)
T ss_pred CCeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCCcCCCCeEHHHhcCCC-CCceEEEEEeccCCCCCCEEEEEeCCC
Confidence 334544433 45557888999999988665322221111111111111121 234777776643 4578889999
Q ss_pred cEEEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEec--CCceEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccc
Q 016197 143 ELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL--GFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF 220 (393)
Q Consensus 143 ~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~--g~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~ 220 (393)
.+--.-.+.+-.... .-...+...++..++.+.. ...+.+++|++|++|.+-...-...+....
T Consensus 615 yiKRi~l~~~~~~~r--------~G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~------ 680 (805)
T PRK05560 615 TVKKTSLSEFSNIRS--------NGIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTAR------ 680 (805)
T ss_pred EEEEEEhHHhhhccc--------CCceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccC------
Confidence 776654332210000 0001111113344544433 345688999999999986544322222211
Q ss_pred ccccccccceeecc-ccCccEEEEEeCC---ceeEEEecCCcEEEEeCCCCCccccCCCCCcCCCccccC-CCCcceE--
Q 016197 221 LRSTSEYTPRLIKE-LEGVKVKIAAAGF---LHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK-LPYSEEV-- 293 (393)
Q Consensus 221 ~~~~~~~~p~~i~~-~~~~~i~~i~~g~---~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~-~~~v~~v-- 293 (393)
...+.. .++..|+.+.... .+.+++|+.|.+.-.-...+-....+... ... ..+.. .+.+..+
T Consensus 681 --------Gv~~i~L~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~kG-~~~-lkl~~~~d~lv~v~~ 750 (805)
T PRK05560 681 --------GVRGIKLREGDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGKG-VIT-IKITEKNGKLVGALP 750 (805)
T ss_pred --------CcccccCCCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCCc-EEe-eeccCCCCeEEEEEE
Confidence 111111 2334566555432 25677888886665432221110000000 000 01111 1223322
Q ss_pred EeeCceeEEEEcCCCEEEEeCCCC
Q 016197 294 VCGGYHTCVLTSGGELYTWGSNEN 317 (393)
Q Consensus 294 ~~g~~~~~~lt~~g~v~~~G~n~~ 317 (393)
..+.+..++++++|++..+-.++-
T Consensus 751 v~~~~~v~i~T~~G~~lrf~~~eI 774 (805)
T PRK05560 751 VDDDDEIMLITDSGKLIRTRVSEI 774 (805)
T ss_pred ecCCCeEEEEecCCeEEEEEHHHC
Confidence 224456788899999888776543
No 57
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.30 E-value=1.9e+02 Score=32.15 Aligned_cols=65 Identities=20% Similarity=0.336 Sum_probs=38.7
Q ss_pred EEEecCCcEEEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecCCceEEEEeCCCcEEEEeCC
Q 016197 136 SAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAG 204 (393)
Q Consensus 136 ~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~s~~lt~~G~v~~~G~n 204 (393)
+-+|-|.+||.|-.++.+++-.-+........-..+..-.+.-+-.| .|.++|...=+|+..|-.
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~I----qhlLvvaT~~ei~ilgV~ 157 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEI----QHLLVVATPVEIVILGVS 157 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhh----heeEEecccceEEEEEEE
Confidence 66788999999999887766532222211111122222222223333 588999888899988853
No 58
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=56.74 E-value=2.7e+02 Score=29.67 Aligned_cols=221 Identities=13% Similarity=0.004 Sum_probs=103.5
Q ss_pred CCceeEEE--eCCCeeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEc-----CCceEEEEecCC
Q 016197 70 KHSLKALA--CGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIST-----GYHHSSAITVDG 142 (393)
Q Consensus 70 ~~~I~~I~--~G~~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~-----g~~~~~~lt~~G 142 (393)
+..+..+. ...++.+++|+.|++|..-...-...+.............+. -.++|+.+.+ -....+++|++|
T Consensus 534 ~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~~i~~ll~L~-~~E~Iv~~i~~~~~~~~~~lvliT~~G 612 (800)
T TIGR01063 534 DDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPEASRTAKGKPIVNLLPLQ-PDERITAILSVKEFDDGLYLFFATKNG 612 (800)
T ss_pred CCeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcCCCcCCCCcCHHHhccCC-CCCeEEEEEEeccCCCCCEEEEEeCCC
Confidence 34454443 345557888999999998443322211111111111111221 2346776665 223578889999
Q ss_pred cEEEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEe--cCCceEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccc
Q 016197 143 ELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAA--LGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF 220 (393)
Q Consensus 143 ~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~--~g~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~ 220 (393)
.+--.-.+.+-... ..-..-+..-++..++.+. ....+.+++|++|+++.+-...-...+.....
T Consensus 613 yiKRi~l~~~~~~~--------r~G~~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~G----- 679 (800)
T TIGR01063 613 VVKKTSLTEFSNIR--------SNGIIAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARG----- 679 (800)
T ss_pred EEEEEEhHHhhhhc--------cCCcccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCC-----
Confidence 77765433321000 0000001111233444443 33456889999999999866554333332210
Q ss_pred ccccccccceeeccccCccEEEEEeC--CceeEEEecCCcEEEEeCCCCCccccCCCCCcCCCcc--ccC-CCCcceEE-
Q 016197 221 LRSTSEYTPRLIKELEGVKVKIAAAG--FLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSL--ISK-LPYSEEVV- 294 (393)
Q Consensus 221 ~~~~~~~~p~~i~~~~~~~i~~i~~g--~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~--i~~-~~~v~~v~- 294 (393)
. ..+...++..|+.+..- ..+.+++|++|.+.-.-....-....+ ...-.. +.. ...+..+.
T Consensus 680 ----v----~~i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~----~kGv~~ikl~~~~d~lv~~~~ 747 (800)
T TIGR01063 680 ----V----RGIKLKNEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRG----GKGVKSIKITDRNGQVVGAIA 747 (800)
T ss_pred ----e----ecccCCCCCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCC----CcceEEEEccCCCCeEEEEEE
Confidence 0 01222234456655442 235677788887665432221110000 000001 111 12233222
Q ss_pred -eeCceeEEEEcCCCEEEEeCCC
Q 016197 295 -CGGYHTCVLTSGGELYTWGSNE 316 (393)
Q Consensus 295 -~g~~~~~~lt~~g~v~~~G~n~ 316 (393)
...+..++++++|++..+-.++
T Consensus 748 v~~~~~v~liT~~G~~lrf~~~e 770 (800)
T TIGR01063 748 VDDDDELMLITSAGKLIRTSVQD 770 (800)
T ss_pred ecCCCeEEEEecCCeEEEeeHhh
Confidence 2344578888889888776554
No 59
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.61 E-value=39 Score=36.20 Aligned_cols=36 Identities=8% Similarity=0.226 Sum_probs=25.4
Q ss_pred EEEEe-cCCceEEEEe--CCCcEEEEeCCCCCCCCCCCC
Q 016197 179 TKQAA-LGFEQSVAVT--GGGKVLSWGAGGSGRLGHGQE 214 (393)
Q Consensus 179 i~~i~-~g~~~s~~lt--~~G~v~~~G~n~~gqlg~~~~ 214 (393)
|+.++ |..+-.++|+ +|+++++|+-|...+++--+.
T Consensus 256 ilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~ 294 (1049)
T KOG0307|consen 256 ILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA 294 (1049)
T ss_pred eeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC
Confidence 66665 5555455554 689999999998777776555
No 60
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=54.36 E-value=51 Score=29.31 Aligned_cols=77 Identities=14% Similarity=0.150 Sum_probs=42.1
Q ss_pred EEEeCCCe-eEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcCCceEEEEecCCcEEEEecCC
Q 016197 75 ALACGGAH-TLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNS 151 (393)
Q Consensus 75 ~I~~G~~~-~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~ 151 (393)
+++.++.+ +..+..||+|++.|-....-.-.-........+..++.+...-.......+-.+.|..+|+||.++.+.
T Consensus 113 ~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~ 190 (243)
T PF07250_consen 113 DMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG 190 (243)
T ss_pred cccCCCccccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC
Confidence 46777776 778889999999986542111110000001112222211111112234556678999999999998753
No 61
>PLN02153 epithiospecifier protein
Probab=54.15 E-value=1.9e+02 Score=26.98 Aligned_cols=17 Identities=18% Similarity=0.200 Sum_probs=12.9
Q ss_pred CceEEEECCcEEEEecC
Q 016197 351 KHTAAISEGKILTWGWG 367 (393)
Q Consensus 351 ~~t~~l~~g~v~~wG~~ 367 (393)
.|++++.+++||++|-.
T Consensus 244 ~~~~~~~~~~iyv~GG~ 260 (341)
T PLN02153 244 VFAHAVVGKYIIIFGGE 260 (341)
T ss_pred eeeeEEECCEEEEECcc
Confidence 45666559999999974
No 62
>PHA02790 Kelch-like protein; Provisional
Probab=53.10 E-value=2e+02 Score=28.54 Aligned_cols=14 Identities=14% Similarity=0.228 Sum_probs=10.5
Q ss_pred EEEcCCCEEEEeCC
Q 016197 302 VLTSGGELYTWGSN 315 (393)
Q Consensus 302 ~lt~~g~v~~~G~n 315 (393)
+..-+|+||..|..
T Consensus 442 ~~v~~~~IYviGG~ 455 (480)
T PHA02790 442 LIIVDNKLLLIGGF 455 (480)
T ss_pred EEEECCEEEEECCc
Confidence 44558899999963
No 63
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=52.48 E-value=2.1e+02 Score=27.12 Aligned_cols=15 Identities=7% Similarity=0.127 Sum_probs=11.8
Q ss_pred EEEEcCCCEEEEeCC
Q 016197 301 CVLTSGGELYTWGSN 315 (393)
Q Consensus 301 ~~lt~~g~v~~~G~n 315 (393)
.++.-+++||.+|..
T Consensus 338 ~av~~~~~iyv~GG~ 352 (376)
T PRK14131 338 VSVSWNNGVLLIGGE 352 (376)
T ss_pred EEEEeCCEEEEEcCC
Confidence 466678999999964
No 64
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=51.91 E-value=3.5e+02 Score=29.47 Aligned_cols=48 Identities=17% Similarity=0.043 Sum_probs=35.0
Q ss_pred ceeEEEecCCcEEEEeCCCCCccccCCCCCcCCCccccCCCCcceEEeeCceeEEEEcCCCEEEEeCC
Q 016197 248 LHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSN 315 (393)
Q Consensus 248 ~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~v~~v~~g~~~~~~lt~~g~v~~~G~n 315 (393)
...+.|+.+|++|.=+. . ...+++++.....|.++-|.+..+...=-+
T Consensus 592 ~~~~GLs~~~~Ly~n~~------------------~--la~~~tSF~v~~~~Ll~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 592 RVLFGLSSNGRLYANSR------------------L--LASNCTSFAVTDSFLLFTTTQHTLKFVHLN 639 (928)
T ss_pred eEEEEECCCCEEEECCE------------------E--EecCCceEEEEcCEEEEEecCceEEEEECc
Confidence 36788889999996110 0 124688888899999888888887776655
No 65
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=49.91 E-value=2.4e+02 Score=26.92 Aligned_cols=18 Identities=11% Similarity=0.213 Sum_probs=14.4
Q ss_pred eCceeEEEEcCCCEEEEe
Q 016197 296 GGYHTCVLTSGGELYTWG 313 (393)
Q Consensus 296 g~~~~~~lt~~g~v~~~G 313 (393)
.+.+.++.+++|+||++-
T Consensus 375 ~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 375 ADDKLLIQARDGTVYAIT 392 (394)
T ss_pred ECCEEEEEeCCceEEEEe
Confidence 356888889999999864
No 66
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=48.72 E-value=2.7e+02 Score=27.23 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=16.5
Q ss_pred eEEEEeCCCceEEEE---CCcEEEEecC
Q 016197 343 VDQVSCGWKHTAAIS---EGKILTWGWG 367 (393)
Q Consensus 343 i~~i~~G~~~t~~l~---~g~v~~wG~~ 367 (393)
-.++.+...-.++.. +|+||.|+++
T Consensus 435 s~~v~fSpDG~~l~SGdsdG~v~~wdwk 462 (503)
T KOG0282|consen 435 SCQVDFSPDGRTLCSGDSDGKVNFWDWK 462 (503)
T ss_pred eeeEEEcCCCCeEEeecCCccEEEeech
Confidence 345555555555555 6899999994
No 67
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=47.01 E-value=3.6e+02 Score=28.12 Aligned_cols=102 Identities=19% Similarity=0.294 Sum_probs=57.1
Q ss_pred EEeCCCeeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcCCceEEEEecCC-cEEEEecCCCCC
Q 016197 76 LACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDG-ELYMWGKNSNGQ 154 (393)
Q Consensus 76 I~~G~~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g~~~~~~lt~~G-~vy~~G~n~~gq 154 (393)
++.|..|-+++. ||-|-.|..+. .. + ....|..++...+.++++|.-. +|-.|-..
T Consensus 138 vSVGsQHDMIVn----v~dWr~N~~~a------sn------k---iss~Vsav~fsEdgSYfvT~gnrHvk~wyl~---- 194 (1080)
T KOG1408|consen 138 VSVGSQHDMIVN----VNDWRVNSSGA------SN------K---ISSVVSAVAFSEDGSYFVTSGNRHVKLWYLQ---- 194 (1080)
T ss_pred EeeccccceEEE----hhhhhhccccc------cc------c---cceeEEEEEEccCCceeeeeeeeeEEEEEee----
Confidence 344566666664 77787775331 00 1 2236666666666666665543 33333211
Q ss_pred CCCCCCCCcccccCeE---eccCCCceEEEEecCCc----eEEEEeCCCcEEEEe
Q 016197 155 LGLGKKAAKVIPIPTK---VECLSGIFTKQAALGFE----QSVAVTGGGKVLSWG 202 (393)
Q Consensus 155 lg~~~~~~~~~~~~~~---~~~~~~~~i~~i~~g~~----~s~~lt~~G~v~~~G 202 (393)
.+ ..-....|.|-+ +..+....+..|+||.. .+++||..|.+.-+-
T Consensus 195 ~~--~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFS 247 (1080)
T KOG1408|consen 195 IQ--SKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFS 247 (1080)
T ss_pred cc--ccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeec
Confidence 11 111112333332 23445556899999988 899999999988764
No 68
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=46.54 E-value=2.2e+02 Score=25.50 Aligned_cols=38 Identities=16% Similarity=0.222 Sum_probs=25.6
Q ss_pred ecceEeccCCCcEEEE-EcCCceEEEE-ecCCcEEEEecC
Q 016197 113 LEPLRISGLKKEVVQI-STGYHHSSAI-TVDGELYMWGKN 150 (393)
Q Consensus 113 ~~p~~i~~~~~~i~~i-~~g~~~~~~l-t~~G~vy~~G~n 150 (393)
..|..+..-+..|+.+ -|-.+++++- +.++.|..|-..
T Consensus 134 App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~r 173 (334)
T KOG0278|consen 134 APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHR 173 (334)
T ss_pred CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEec
Confidence 4555666556667664 5777777665 677889999654
No 69
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=46.02 E-value=27 Score=24.95 Aligned_cols=42 Identities=24% Similarity=0.268 Sum_probs=29.9
Q ss_pred CCCccccCCCCcceEEee-CceeEEEEcCCCEEEEeCCCCCCC
Q 016197 279 RRPSLISKLPYSEEVVCG-GYHTCVLTSGGELYTWGSNENGCL 320 (393)
Q Consensus 279 ~~p~~i~~~~~v~~v~~g-~~~~~~lt~~g~v~~~G~n~~gql 320 (393)
..|..+..-..-..|+|. ....++|++||.+|+-+--+.|++
T Consensus 7 t~Pa~i~~~~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~a 49 (81)
T PF03785_consen 7 THPASINLGQTSISVSCDVPGSYVALSQDGDLYGKAIVNSGNA 49 (81)
T ss_dssp E--SEEETT-SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEE
T ss_pred cccccccccccEEEEEecCCCcEEEEecCCEEEEEEEecCceE
Confidence 346666666667889999 889999999999999887666654
No 70
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=45.97 E-value=3.5e+02 Score=30.08 Aligned_cols=120 Identities=17% Similarity=0.178 Sum_probs=59.4
Q ss_pred ceeEEEeCCCe-eEEE--ecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEE-cCCce-EEEEecCCcEEE
Q 016197 72 SLKALACGGAH-TLFL--TETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIS-TGYHH-SSAITVDGELYM 146 (393)
Q Consensus 72 ~I~~I~~G~~~-~~~l--t~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~-~g~~~-~~~lt~~G~vy~ 146 (393)
.+.+++....| ++|+ .+||.|=+|-.-.. .|.+ .......+... ....+.++. |++.+ .++-++||.|-+
T Consensus 1050 ~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~--~~~~--~s~rS~ltys~-~~sr~~~vt~~~~~~~~Av~t~DG~v~~ 1124 (1431)
T KOG1240|consen 1050 AVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKL--EGEG--GSARSELTYSP-EGSRVEKVTMCGNGDQFAVSTKDGSVRV 1124 (1431)
T ss_pred cccceeecCCCCceEEEecCCceEEEeeehhh--hcCc--ceeeeeEEEec-cCCceEEEEeccCCCeEEEEcCCCeEEE
Confidence 45678887777 6666 58899999964321 1111 11112222221 122444443 33333 333388999988
Q ss_pred EecCCCCCCCCCCCCCcccccCeEec-cCCCceEEEEecCCc----e-EEEEeCCCcEEEEeC
Q 016197 147 WGKNSNGQLGLGKKAAKVIPIPTKVE-CLSGIFTKQAALGFE----Q-SVAVTGGGKVLSWGA 203 (393)
Q Consensus 147 ~G~n~~gqlg~~~~~~~~~~~~~~~~-~~~~~~i~~i~~g~~----~-s~~lt~~G~v~~~G~ 203 (393)
.+-+.+. .......-.++. ......++++.+-.. | .+..|..+.+..|+.
T Consensus 1125 ~~id~~~-------~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~ 1180 (1431)
T KOG1240|consen 1125 LRIDHYN-------VSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDT 1180 (1431)
T ss_pred EEccccc-------cccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecc
Confidence 8766431 110111111111 112223666655333 2 345688888888875
No 71
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=45.37 E-value=30 Score=31.86 Aligned_cols=63 Identities=8% Similarity=0.122 Sum_probs=44.2
Q ss_pred eeEeeeccccceEEEEEEcCCCCCcCCCCCCCeeeeeeeccccCCceeEEEeCCCeeEE--EecCCcEEEEec
Q 016197 27 CKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLF--LTETGCVYATGL 97 (393)
Q Consensus 27 ~~~~~~~~~~~~~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~I~~I~~G~~~~~~--lt~~G~v~~wG~ 97 (393)
+..|+..-...|+||+|--- ..++...++......+..|+|.+...+-+++ +.+++.||-|-.
T Consensus 318 ~~~~la~gnq~g~v~vwdL~--------~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 318 WQKMLALGNQSGKVYVWDLD--------NNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred HHHHHhhccCCCcEEEEECC--------CCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 55566666678888888732 2244456666666778889999988776544 478899998853
No 72
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=43.90 E-value=28 Score=20.79 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=15.3
Q ss_pred ceEEEEeCCCcEEEEeCC
Q 016197 187 EQSVAVTGGGKVLSWGAG 204 (393)
Q Consensus 187 ~~s~~lt~~G~v~~~G~n 204 (393)
-+.++++.+|.||+.|.-
T Consensus 15 ~~~IavD~~GNiYv~G~T 32 (38)
T PF06739_consen 15 GNGIAVDSNGNIYVTGYT 32 (38)
T ss_pred EEEEEECCCCCEEEEEee
Confidence 367899999999999964
No 73
>PHA02790 Kelch-like protein; Provisional
Probab=43.85 E-value=1.1e+02 Score=30.30 Aligned_cols=19 Identities=11% Similarity=0.375 Sum_probs=12.9
Q ss_pred CceEEEEecCCcEEEEecC
Q 016197 132 YHHSSAITVDGELYMWGKN 150 (393)
Q Consensus 132 ~~~~~~lt~~G~vy~~G~n 150 (393)
.....+..-+|+||+.|-.
T Consensus 353 r~~~~~~~~~g~IYviGG~ 371 (480)
T PHA02790 353 RCNPAVASINNVIYVIGGH 371 (480)
T ss_pred CcccEEEEECCEEEEecCc
Confidence 3334455667899999874
No 74
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=43.59 E-value=4.9e+02 Score=29.02 Aligned_cols=110 Identities=19% Similarity=0.235 Sum_probs=62.9
Q ss_pred eeEeeeccccceEEEEEEcCCCCCcCCC-CCC--CeeeeeeeccccCCceeEEEe-CCCee-EEEecCCcEEEEecCCCe
Q 016197 27 CKRWISSTLQRRFAALWGNGDYGRLGLG-SLE--SRWRPVVCSAFEKHSLKALAC-GGAHT-LFLTETGCVYATGLNDFG 101 (393)
Q Consensus 27 ~~~~~~~~~~~~~v~~wG~n~~g~lG~~-~~~--~~~~p~~~~~~~~~~I~~I~~-G~~~~-~~lt~~G~v~~wG~n~~g 101 (393)
+..++++.++||.|-+|=.-. ..|.+ ... .++.| .+.++.+|.. +..+. ++-++||.|-+.+-+.+.
T Consensus 1060 ~~s~FvsgS~DGtVKvW~~~k--~~~~~~s~rS~ltys~------~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~ 1131 (1431)
T KOG1240|consen 1060 HTSLFVSGSDDGTVKVWNLRK--LEGEGGSARSELTYSP------EGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYN 1131 (1431)
T ss_pred CCceEEEecCCceEEEeeehh--hhcCcceeeeeEEEec------cCCceEEEEeccCCCeEEEEcCCCeEEEEEccccc
Confidence 337888899999999997543 33432 111 12222 4455666554 23332 333899999888765531
Q ss_pred eccCCCCCCceecceEeccCCC--cEEEEEcC-----CceEEEEecCCcEEEEecC
Q 016197 102 QLGISENIGYSLEPLRISGLKK--EVVQISTG-----YHHSSAITVDGELYMWGKN 150 (393)
Q Consensus 102 ~lg~~~~~~~~~~p~~i~~~~~--~i~~i~~g-----~~~~~~lt~~G~vy~~G~n 150 (393)
.........+++++.+ .++++.+- ..-.++.|..+++..|+..
T Consensus 1132 ------~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r 1181 (1431)
T KOG1240|consen 1132 ------VSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTR 1181 (1431)
T ss_pred ------cccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecch
Confidence 2222233334444433 56666542 2346778889999999764
No 75
>PHA03098 kelch-like protein; Provisional
Probab=43.36 E-value=2.1e+02 Score=28.58 Aligned_cols=15 Identities=13% Similarity=0.016 Sum_probs=10.7
Q ss_pred EEecCCcEEEEecCC
Q 016197 85 FLTETGCVYATGLND 99 (393)
Q Consensus 85 ~lt~~G~v~~wG~n~ 99 (393)
+..-+|++|++|-..
T Consensus 338 ~~~~~~~lyv~GG~~ 352 (534)
T PHA03098 338 VTVFNNRIYVIGGIY 352 (534)
T ss_pred EEEECCEEEEEeCCC
Confidence 344578999999643
No 76
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.09 E-value=4.5e+02 Score=27.56 Aligned_cols=70 Identities=16% Similarity=0.146 Sum_probs=41.9
Q ss_pred ccEEEEEeC--CceeEEEecCCcEEEEeCCCCCccccCCCCCcCCCccccCCCCcceEEeeCceeEEEEcCCCEEEEeCC
Q 016197 238 VKVKIAAAG--FLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSN 315 (393)
Q Consensus 238 ~~i~~i~~g--~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~v~~v~~g~~~~~~lt~~g~v~~~G~n 315 (393)
..+.+|+.+ ..|.+..|++|++|.--......+..-+-.....|. ....||++ ++++.-...|...|.+
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~--------qm~Wcgnd-aVvl~~e~~l~lvgp~ 287 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPK--------QMAWCGND-AVVLSWEVNLMLVGPP 287 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchH--------hceeecCC-ceEEEEeeeEEEEcCC
Confidence 367887776 456677799999997544433332222212222222 34567777 6667767778877765
Q ss_pred C
Q 016197 316 E 316 (393)
Q Consensus 316 ~ 316 (393)
.
T Consensus 288 g 288 (829)
T KOG2280|consen 288 G 288 (829)
T ss_pred C
Confidence 4
No 77
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=40.92 E-value=4.3e+02 Score=28.38 Aligned_cols=223 Identities=14% Similarity=0.090 Sum_probs=0.0
Q ss_pred EEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEc----------CCceEEEEecCCcEEEEecCCCC
Q 016197 84 LFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIST----------GYHHSSAITVDGELYMWGKNSNG 153 (393)
Q Consensus 84 ~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~----------g~~~~~~lt~~G~vy~~G~n~~g 153 (393)
+-+|.|++++.| .......-..+..+...|.+|.. .=.|.+++.+.-++|..|-.
T Consensus 96 cWiT~dnkLiLW------------nynn~neyq~idd~shtIlkVkLvrPkantFvs~i~hlL~vAT~~e~~ilgvs--- 160 (1263)
T COG5308 96 CWITNDNKLILW------------NYNNSNEYQEIDDFSHTILKVKLVRPKANTFVSRISHLLFVATEKEVMILGVS--- 160 (1263)
T ss_pred eEEEcCCEEEEE------------ecCCCcchhhhhhhhhheeEEEEeccCCcccHHhhhhhhhhhhhheeeEEEEE---
Q ss_pred CCCCCCCCCcccccCeEeccCCCceEEEEecCCceEEEEeCCCcEEEEeCCC----------CCCCCCCCCCCccccccc
Q 016197 154 QLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGG----------SGRLGHGQESSILGFLRS 223 (393)
Q Consensus 154 qlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~s~~lt~~G~v~~~G~n~----------~gqlg~~~~~~~~~~~~~ 223 (393)
.-.....+..+..--.+.|..-+--.++..++|++|.-|.+. ...+-......+-.....
T Consensus 161 ----------~d~~T~Els~fnTgl~vsvqGinV~civs~e~GrIFf~g~~d~nvyEl~Y~~sd~wfnskcskiclTkS~ 230 (1263)
T COG5308 161 ----------KDTKTGELSLFNTGLVVSVQGINVRCIVSEEDGRIFFGGENDPNVYELVYKSSDSWFNSKCSKICLTKSI 230 (1263)
T ss_pred ----------eccccceeEEEecceEEeccCceeEEEEeccCCcEEEecCCCCCeEEEEEeccchhhhhhhhccCCcHHH
Q ss_pred cccccceeec-cccCccEEEEEe--CCceeEEEecCCcEEEEeCCCCCccc-----------cCCCCCcCCCccccCCCC
Q 016197 224 TSEYTPRLIK-ELEGVKVKIAAA--GFLHSACIDENGRVYIFGDRAVDKML-----------FQEGNHARRPSLISKLPY 289 (393)
Q Consensus 224 ~~~~~p~~i~-~~~~~~i~~i~~--g~~~~~~lt~~G~vy~wG~n~~gqlg-----------~~~~~~~~~p~~i~~~~~ 289 (393)
.....|+.+. ..++..|.+++. ...-.+.|.+.-.|-+.--...+-.| .........|-.-+...+
T Consensus 231 l~sllPs~~~~~ipgetI~Ql~vDqsRg~ly~Lr~kS~Vray~itkngl~gpv~i~~a~i~r~a~~lna~sPlL~pr~~k 310 (1263)
T COG5308 231 LSSLLPSFFSFGIPGETIKQLAVDQSRGLLYVLRKKSAVRAYSITKNGLVGPVFISFASIDRNAAILNATSPLLEPRMYK 310 (1263)
T ss_pred HHhhcccccccCCcccchhheeecccccceeeecccceeeeEeeecccccccccccHHHHHhHHhhhccCCcccCCceEE
Q ss_pred cceEE------eeCceeEEEEcCC-CEEEEeCCCCCCCCCCCCCCccCc
Q 016197 290 SEEVV------CGGYHTCVLTSGG-ELYTWGSNENGCLGIGSIDVLHSP 331 (393)
Q Consensus 290 v~~v~------~g~~~~~~lt~~g-~v~~~G~n~~gqlG~g~~~~~~~p 331 (393)
|.+|. .-.-+.+|+|..| ++|.=|+-..-+.+.-..+.+..|
T Consensus 311 IvkIvsi~~~Enn~lflvaiT~tgcRlYf~Gs~gr~si~alkldSvkfp 359 (1263)
T COG5308 311 IVKIVSIPAYENNQLFLVAITSTGCRLYFDGSRGRVSIVALKLDSVKFP 359 (1263)
T ss_pred EEEEeecccccccceEEEEEeccceEEEEecCccceeeecccccccccC
No 78
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=40.62 E-value=3e+02 Score=25.37 Aligned_cols=18 Identities=11% Similarity=0.023 Sum_probs=12.1
Q ss_pred eEEEEeCCCcEEEEeCCC
Q 016197 188 QSVAVTGGGKVLSWGAGG 205 (393)
Q Consensus 188 ~s~~lt~~G~v~~~G~n~ 205 (393)
++.+...++++|++|-.+
T Consensus 216 ~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 216 AASIKINESLLLCIGGFN 233 (323)
T ss_pred eeEEEECCCEEEEECCcC
Confidence 333445678999998643
No 79
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=40.34 E-value=2.9e+02 Score=25.20 Aligned_cols=139 Identities=15% Similarity=0.202 Sum_probs=70.7
Q ss_pred eEeeeccccceEEEEEEcCCCCCcCCCCCCCeeeeeeeccccCCceeEEEeC---CCeeEEEecCCcEEEEecCCCeecc
Q 016197 28 KRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACG---GAHTLFLTETGCVYATGLNDFGQLG 104 (393)
Q Consensus 28 ~~~~~~~~~~~~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~I~~I~~G---~~~~~~lt~~G~v~~wG~n~~g~lg 104 (393)
-.+.++...||.||.-++.. |.+|.= +... ..++++..| .-|.+++..||..|++-... ...-
T Consensus 63 ap~dvapapdG~VWft~qg~-gaiGhL--dP~t----------Gev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R 128 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGT-GAIGHL--DPAT----------GEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGR 128 (353)
T ss_pred CccccccCCCCceEEecCcc-ccceec--CCCC----------CceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEE
Confidence 34556677899899877643 344432 2211 123333332 23677778888888764432 1111
Q ss_pred CCCCCCceecceEeccCCCcEEEEEcCCceEEEEecCCcEEEEecCC-CCCCCCCCCCCcccccCeEeccCCCceEEEEe
Q 016197 105 ISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNS-NGQLGLGKKAAKVIPIPTKVECLSGIFTKQAA 183 (393)
Q Consensus 105 ~~~~~~~~~~p~~i~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~-~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~ 183 (393)
+.. +.-..+ +.+ ++ .+..-+.-.+.+++..|+||.-|.+- +|.|--.....+..+.| .
T Consensus 129 ~dp-kt~evt--~f~-lp---~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP--------------q 187 (353)
T COG4257 129 LDP-KTLEVT--RFP-LP---LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP--------------Q 187 (353)
T ss_pred ecC-cccceE--Eee-cc---cccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC--------------C
Confidence 111 111111 111 11 23344566678999999999988742 22221111111111111 1
Q ss_pred cCCceEEEEeCCCcEEEE
Q 016197 184 LGFEQSVAVTGGGKVLSW 201 (393)
Q Consensus 184 ~g~~~s~~lt~~G~v~~~ 201 (393)
-+.-.-++.|.+|+||..
T Consensus 188 G~gpyGi~atpdGsvwya 205 (353)
T COG4257 188 GGGPYGICATPDGSVWYA 205 (353)
T ss_pred CCCCcceEECCCCcEEEE
Confidence 234467888999999986
No 80
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=39.54 E-value=3.3e+02 Score=25.67 Aligned_cols=73 Identities=19% Similarity=0.192 Sum_probs=41.4
Q ss_pred CceeEEEeCCCeeEEEec--CCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEc--CCceEEEEecCCcEEE
Q 016197 71 HSLKALACGGAHTLFLTE--TGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIST--GYHHSSAITVDGELYM 146 (393)
Q Consensus 71 ~~I~~I~~G~~~~~~lt~--~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~--g~~~~~~lt~~G~vy~ 146 (393)
..|+++....+-+++.|- +|+|.+|=.... .....+...-..|.-+.- -....++=+++|.||+
T Consensus 107 DSVt~~~FshdgtlLATGdmsG~v~v~~~stg------------~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWm 174 (399)
T KOG0296|consen 107 DSVTCCSFSHDGTLLATGDMSGKVLVFKVSTG------------GEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWM 174 (399)
T ss_pred CceEEEEEccCceEEEecCCCccEEEEEcccC------------ceEEEeecccCceEEEEecccccEEEeecCCCcEEE
Confidence 467777777777777754 588888743221 111111111114444433 2344556688999999
Q ss_pred EecCCCCCC
Q 016197 147 WGKNSNGQL 155 (393)
Q Consensus 147 ~G~n~~gql 155 (393)
|-.++.+++
T Consensus 175 w~ip~~~~~ 183 (399)
T KOG0296|consen 175 WQIPSQALC 183 (399)
T ss_pred EECCCccee
Confidence 987764443
No 81
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=37.51 E-value=34 Score=21.45 Aligned_cols=17 Identities=35% Similarity=0.561 Sum_probs=13.3
Q ss_pred CceEEEECCcEEEEecC
Q 016197 351 KHTAAISEGKILTWGWG 367 (393)
Q Consensus 351 ~~t~~l~~g~v~~wG~~ 367 (393)
.|+++..++++|++|--
T Consensus 4 ~hs~~~~~~kiyv~GG~ 20 (49)
T PF07646_consen 4 GHSAVVLDGKIYVFGGY 20 (49)
T ss_pred ceEEEEECCEEEEECCc
Confidence 46666669999999963
No 82
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=37.50 E-value=90 Score=28.89 Aligned_cols=56 Identities=18% Similarity=0.260 Sum_probs=37.9
Q ss_pred EEeCCCcEEEEeCCCCCCCCCCCCCCccccccccccccceeeccccCccEEEEEeCCcee--EEEecCCcEEEEe
Q 016197 191 AVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHS--ACIDENGRVYIFG 263 (393)
Q Consensus 191 ~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~--~~lt~~G~vy~wG 263 (393)
+....|+||+|-.... .+...++......+..|++.+...+-+ ++..+++.||.|-
T Consensus 324 ~gnq~g~v~vwdL~~~-----------------ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 324 LGNQSGKVYVWDLDNN-----------------EPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred hccCCCcEEEEECCCC-----------------CCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 3457899999975432 122345555566667888888776655 5567899999985
No 83
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=36.31 E-value=3.5e+02 Score=24.91 Aligned_cols=18 Identities=11% Similarity=0.086 Sum_probs=12.5
Q ss_pred eeEEEEcCCCEEEEeCCC
Q 016197 299 HTCVLTSGGELYTWGSNE 316 (393)
Q Consensus 299 ~~~~lt~~g~v~~~G~n~ 316 (393)
+..+...+++||.+|...
T Consensus 216 ~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 216 AASIKINESLLLCIGGFN 233 (323)
T ss_pred eeEEEECCCEEEEECCcC
Confidence 334455678999999754
No 84
>PF13964 Kelch_6: Kelch motif
Probab=34.92 E-value=40 Score=21.14 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=15.3
Q ss_pred CCceEEEECCcEEEEecCCC
Q 016197 350 WKHTAAISEGKILTWGWGGS 369 (393)
Q Consensus 350 ~~~t~~l~~g~v~~wG~~~~ 369 (393)
..|+++..+++||++|-..+
T Consensus 3 ~~~s~v~~~~~iyv~GG~~~ 22 (50)
T PF13964_consen 3 YGHSAVVVGGKIYVFGGYDN 22 (50)
T ss_pred ccCEEEEECCEEEEECCCCC
Confidence 35777777999999997543
No 85
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=32.68 E-value=4.4e+02 Score=24.98 Aligned_cols=73 Identities=10% Similarity=0.179 Sum_probs=37.9
Q ss_pred EEEEecCCceEEEEeCCCc-EEEEeCCCCCCCCCCCCCCccccccccccccceeeccccCccEEEEE---------eCCc
Q 016197 179 TKQAALGFEQSVAVTGGGK-VLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAA---------AGFL 248 (393)
Q Consensus 179 i~~i~~g~~~s~~lt~~G~-v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~---------~g~~ 248 (393)
+..|..|...-.+++.+|+ +|+. ...+.+..++........ +..-....+.+|. .-..
T Consensus 40 ~g~i~~G~~P~~~~spDg~~lyva-~~~~~R~~~G~~~d~V~v-----------~D~~t~~~~~~i~~p~~p~~~~~~~~ 107 (352)
T TIGR02658 40 LGMTDGGFLPNPVVASDGSFFAHA-STVYSRIARGKRTDYVEV-----------IDPQTHLPIADIELPEGPRFLVGTYP 107 (352)
T ss_pred EEEEEccCCCceeECCCCCEEEEE-eccccccccCCCCCEEEE-----------EECccCcEEeEEccCCCchhhccCcc
Confidence 5556677664456888875 5654 334445555554322211 1111111233333 3344
Q ss_pred eeEEEecCCc-EEEEe
Q 016197 249 HSACIDENGR-VYIFG 263 (393)
Q Consensus 249 ~~~~lt~~G~-vy~wG 263 (393)
..++++.||+ +|..-
T Consensus 108 ~~~~ls~dgk~l~V~n 123 (352)
T TIGR02658 108 WMTSLTPDNKTLLFYQ 123 (352)
T ss_pred ceEEECCCCCEEEEec
Confidence 5889999997 66653
No 86
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=32.25 E-value=3.6e+02 Score=23.96 Aligned_cols=71 Identities=18% Similarity=0.255 Sum_probs=39.7
Q ss_pred CCceeEEEecCCcEEEEeCCCCCccccCCC-CCcCCCccccCCCCcce-EEeeCceeEEEEcCCCEEEEeCCC
Q 016197 246 GFLHSACIDENGRVYIFGDRAVDKMLFQEG-NHARRPSLISKLPYSEE-VVCGGYHTCVLTSGGELYTWGSNE 316 (393)
Q Consensus 246 g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~-~~~~~p~~i~~~~~v~~-v~~g~~~~~~lt~~g~v~~~G~n~ 316 (393)
-++-+..+..||+|+..|-....-...-.. .....+..+..+....+ .....+=.+.|..||+||.++.+.
T Consensus 118 RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~ 190 (243)
T PF07250_consen 118 RWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG 190 (243)
T ss_pred CccccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC
Confidence 467888899999999998655211111110 01112222333333222 122334357788899999999864
No 87
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=32.19 E-value=2.1e+02 Score=27.31 Aligned_cols=62 Identities=16% Similarity=0.185 Sum_probs=44.6
Q ss_pred eEEEEecCCce---EEEEeCCCcEEEEeCCCCCCCCCCCCCCccccccccccccceeeccccCccEEEEEeCCceeEEEe
Q 016197 178 FTKQAALGFEQ---SVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACID 254 (393)
Q Consensus 178 ~i~~i~~g~~~---s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt 254 (393)
.++.+.+++.+ .+++..+|++.-|-.+. .+.++ .+...+.+|.--....+|++
T Consensus 161 ~~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~-----------------------Wt~l~-~~~~~~~DIi~~kGkfYAvD 216 (373)
T PLN03215 161 ALVKVKEGDNHRDGVLGIGRDGKINYWDGNV-----------------------LKALK-QMGYHFSDIIVHKGQTYALD 216 (373)
T ss_pred EEEEeecCCCcceEEEEEeecCcEeeecCCe-----------------------eeEcc-CCCceeeEEEEECCEEEEEc
Confidence 45557777775 67778899998885321 12222 24457888888888899999
Q ss_pred cCCcEEEEe
Q 016197 255 ENGRVYIFG 263 (393)
Q Consensus 255 ~~G~vy~wG 263 (393)
..|+||.+.
T Consensus 217 ~~G~l~~i~ 225 (373)
T PLN03215 217 SIGIVYWIN 225 (373)
T ss_pred CCCeEEEEe
Confidence 999999986
No 88
>PF13854 Kelch_5: Kelch motif
Probab=30.52 E-value=55 Score=19.79 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=14.3
Q ss_pred CCceEEEECCcEEEEecC
Q 016197 350 WKHTAAISEGKILTWGWG 367 (393)
Q Consensus 350 ~~~t~~l~~g~v~~wG~~ 367 (393)
..|+++..++++|.+|-.
T Consensus 6 ~~hs~~~~~~~iyi~GG~ 23 (42)
T PF13854_consen 6 YGHSAVVVGNNIYIFGGY 23 (42)
T ss_pred cceEEEEECCEEEEEcCc
Confidence 367777779999999963
No 89
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=30.35 E-value=55 Score=20.33 Aligned_cols=17 Identities=18% Similarity=0.417 Sum_probs=11.3
Q ss_pred ceEEEEeCCCcEEEEeC
Q 016197 187 EQSVAVTGGGKVLSWGA 203 (393)
Q Consensus 187 ~~s~~lt~~G~v~~~G~ 203 (393)
.|+++...+++||.+|-
T Consensus 4 ~h~~~~~~~~~i~v~GG 20 (49)
T PF13418_consen 4 GHSAVSIGDNSIYVFGG 20 (49)
T ss_dssp S-EEEEE-TTEEEEE--
T ss_pred eEEEEEEeCCeEEEECC
Confidence 57888887889999985
No 90
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=27.68 E-value=2e+02 Score=25.97 Aligned_cols=63 Identities=21% Similarity=0.318 Sum_probs=35.3
Q ss_pred eCceeEEEEcCCCEEEEeC-CC-CCCCCC----CCCCCccCceeecCCCCCCCeEEEEeCCCceEEEECCcEEEEec
Q 016197 296 GGYHTCVLTSGGELYTWGS-NE-NGCLGI----GSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAISEGKILTWGW 366 (393)
Q Consensus 296 g~~~~~~lt~~g~v~~~G~-n~-~gqlG~----g~~~~~~~p~~v~~~~~~~~i~~i~~G~~~t~~l~~g~v~~wG~ 366 (393)
-..|+++.- ++++|.||. |+ .|.+-. .....++.-.+++..++ -+-..|++++-.++.|++|-
T Consensus 79 RYGHtvV~y-~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vP-------gaRDGHsAcV~gn~MyiFGG 147 (392)
T KOG4693|consen 79 RYGHTVVEY-QDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVP-------GARDGHSACVWGNQMYIFGG 147 (392)
T ss_pred hcCceEEEE-cceEEEEcCccCcccccceeeeeccccccccccceeeecC-------CccCCceeeEECcEEEEecC
Confidence 356776665 677999995 43 232211 11122222222332221 13368999999999999986
No 91
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=27.26 E-value=4.9e+02 Score=23.83 Aligned_cols=140 Identities=17% Similarity=0.217 Sum_probs=69.9
Q ss_pred CCCeeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEc---CCceEEEEecCCcEEEEecCCCCCC
Q 016197 79 GGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIST---GYHHSSAITVDGELYMWGKNSNGQL 155 (393)
Q Consensus 79 G~~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~---g~~~~~~lt~~G~vy~~G~n~~gql 155 (393)
+.-|-++...||.||.-+... +.+|.=+.. ..+++.+.. ..-|.+++..||..|.+-...
T Consensus 62 ~ap~dvapapdG~VWft~qg~-gaiGhLdP~------------tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~---- 124 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGT-GAIGHLDPA------------TGEVETYPLGSGASPHGIVVGPDGSAWITDTGL---- 124 (353)
T ss_pred CCccccccCCCCceEEecCcc-ccceecCCC------------CCceEEEecCCCCCCceEEECCCCCeeEecCcc----
Confidence 345677788999999765432 223322111 123333333 234667777777777764321
Q ss_pred CCCCCCCcccccCeEeccCCCceEEEEecCCceEEEEeCCCcEEEEeCCC-CCCCCCCCCCCccccccccccccceeecc
Q 016197 156 GLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGG-SGRLGHGQESSILGFLRSTSEYTPRLIKE 234 (393)
Q Consensus 156 g~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~s~~lt~~G~v~~~G~n~-~gqlg~~~~~~~~~~~~~~~~~~p~~i~~ 234 (393)
++..... +...++.+.- -.+..-++-.+.+++..|.||.-|.+- ||+|-.... .++.
T Consensus 125 aI~R~dp----kt~evt~f~l--p~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~----------------~i~v 182 (353)
T COG4257 125 AIGRLDP----KTLEVTRFPL--PLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARN----------------VISV 182 (353)
T ss_pred eeEEecC----cccceEEeec--ccccCCCcccceeeCCCccEEEeeccccceecCcccC----------------ceee
Confidence 1111111 0001110000 123333455678899999999988632 232211111 0000
Q ss_pred ccCccEEEEEeCCceeEEEecCCcEEEE
Q 016197 235 LEGVKVKIAAAGFLHSACIDENGRVYIF 262 (393)
Q Consensus 235 ~~~~~i~~i~~g~~~~~~lt~~G~vy~w 262 (393)
++ .-..+.-..++.|.||+||.-
T Consensus 183 fp-----aPqG~gpyGi~atpdGsvwya 205 (353)
T COG4257 183 FP-----APQGGGPYGICATPDGSVWYA 205 (353)
T ss_pred ec-----cCCCCCCcceEECCCCcEEEE
Confidence 00 013345667889999999975
No 92
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=27.06 E-value=1.2e+02 Score=16.53 Aligned_cols=17 Identities=29% Similarity=0.491 Sum_probs=13.3
Q ss_pred eEEEEeCCCcEEEEeCC
Q 016197 188 QSVAVTGGGKVLSWGAG 204 (393)
Q Consensus 188 ~s~~lt~~G~v~~~G~n 204 (393)
+.++++.+|+||+.-.+
T Consensus 5 ~gvav~~~g~i~VaD~~ 21 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSG 21 (28)
T ss_dssp EEEEEETTSEEEEEECC
T ss_pred cEEEEeCCCCEEEEECC
Confidence 56888899999987543
No 93
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=26.65 E-value=6.2e+02 Score=24.86 Aligned_cols=69 Identities=23% Similarity=0.182 Sum_probs=40.3
Q ss_pred eeEeeeccccceEEEEEEcCCCCCcCCCCCCCeeeeeeeccccCCceeEEEeCCCeeEEE--ecCCcEEEEe
Q 016197 27 CKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFL--TETGCVYATG 96 (393)
Q Consensus 27 ~~~~~~~~~~~~~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~I~~I~~G~~~~~~l--t~~G~v~~wG 96 (393)
..++++...-|+.|++|=.-..+.+=. +..--..|++-..+....-.-++++.+.++=| ++.|++-.-.
T Consensus 226 ~~hLlLS~gmD~~vklW~vy~~~~~lr-tf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f 296 (503)
T KOG0282|consen 226 KGHLLLSGGMDGLVKLWNVYDDRRCLR-TFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRF 296 (503)
T ss_pred eeeEEEecCCCceEEEEEEecCcceeh-hhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEE
Confidence 667888888999999998554333221 11223344444444444455666666666555 5566655543
No 94
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=26.55 E-value=4.5e+02 Score=23.17 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=14.9
Q ss_pred cEEEEEcCCce-EEEEecCCcEEEE
Q 016197 124 EVVQISTGYHH-SSAITVDGELYMW 147 (393)
Q Consensus 124 ~i~~i~~g~~~-~~~lt~~G~vy~~ 147 (393)
.+..|.++.+- .++++.+|++|.+
T Consensus 131 ~f~~vfa~~~GvLY~i~~dg~~~~~ 155 (229)
T PF14517_consen 131 DFDAVFAGPNGVLYAITPDGRLYRR 155 (229)
T ss_dssp GEEEEEE-TTS-EEEEETTE-EEEE
T ss_pred cceEEEeCCCccEEEEcCCCceEEe
Confidence 46666665554 6777777777776
No 95
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=26.48 E-value=1.6e+02 Score=28.41 Aligned_cols=65 Identities=17% Similarity=0.376 Sum_probs=0.0
Q ss_pred CceeEEEEcCCCEEEEeCCCCCCCCCCCCCCccCceeecCCCCCCCeEEEEeCCCceEEEE---CCcEEEE
Q 016197 297 GYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAIS---EGKILTW 364 (393)
Q Consensus 297 ~~~~~~lt~~g~v~~~G~n~~gqlG~g~~~~~~~p~~v~~~~~~~~i~~i~~G~~~t~~l~---~g~v~~w 364 (393)
.++++++..||-||+.|. .+|++-.=+.++...-.+++. ....|+.|+.+.+-....+ |++|.+|
T Consensus 349 ~~ts~~fHpDgLifgtgt-~d~~vkiwdlks~~~~a~Fpg--ht~~vk~i~FsENGY~Lat~add~~V~lw 416 (506)
T KOG0289|consen 349 EYTSAAFHPDGLIFGTGT-PDGVVKIWDLKSQTNVAKFPG--HTGPVKAISFSENGYWLATAADDGSVKLW 416 (506)
T ss_pred eeEEeeEcCCceEEeccC-CCceEEEEEcCCccccccCCC--CCCceeEEEeccCceEEEEEecCCeEEEE
No 96
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=25.69 E-value=1.6e+02 Score=21.16 Aligned_cols=39 Identities=26% Similarity=0.380 Sum_probs=26.5
Q ss_pred ceEeccCCCcEEEEEcC-CceEEEEecCCcEEEEecCCCCC
Q 016197 115 PLRISGLKKEVVQISTG-YHHSSAITVDGELYMWGKNSNGQ 154 (393)
Q Consensus 115 p~~i~~~~~~i~~i~~g-~~~~~~lt~~G~vy~~G~n~~gq 154 (393)
|-.+. +...=..|+|. ....++|++||.||.-+--+.|.
T Consensus 9 Pa~i~-~~~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~ 48 (81)
T PF03785_consen 9 PASIN-LGQTSISVSCDVPGSYVALSQDGDLYGKAIVNSGN 48 (81)
T ss_dssp -SEEE-TT-SEEEEEESSTT-EEEEEETTEEEEEEE-BTTE
T ss_pred ccccc-ccccEEEEEecCCCcEEEEecCCEEEEEEEecCce
Confidence 33444 44466778999 89999999999999988644443
No 97
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=24.59 E-value=8.5e+02 Score=25.75 Aligned_cols=157 Identities=15% Similarity=0.111 Sum_probs=81.3
Q ss_pred eCCCeeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEE--EcCCceEEEEecCCcEEEEecCCCCCC
Q 016197 78 CGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQI--STGYHHSSAITVDGELYMWGKNSNGQL 155 (393)
Q Consensus 78 ~G~~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i--~~g~~~~~~lt~~G~vy~~G~n~~gql 155 (393)
.-...++++|++|-|-.---.... ..-..+.. .+.++.+ +.+.+..+++|++|++|.+..+.-- .
T Consensus 492 ~~e~v~VilTk~G~IKr~~~~~~~-----------~saikLKe-gD~L~~~~~~~t~d~LllfTs~Gr~yrf~v~eIP-~ 558 (735)
T TIGR01062 492 PKEPVTIILSKMGWVRSAKGHDID-----------LSTLKYKA-GDSEKAIIEGKSNQKVVFIDSTGRSYALDPDNLP-S 558 (735)
T ss_pred cCcceEEEEecCCEEEeccccccc-----------hhccCcCC-CCeEEEEEEecCCCEEEEEECCCeEEEEEhHhcC-c
Confidence 345677888888865533222111 01111111 1233333 3456679999999999999776432 1
Q ss_pred CCCCCCCcccccCeEeccCCCceEEEEecCCc--eEEEEeCCCcEEEEeCCCCCCCCCCCCCCccccccccccccceeec
Q 016197 156 GLGKKAAKVIPIPTKVECLSGIFTKQAALGFE--QSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIK 233 (393)
Q Consensus 156 g~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~--~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~ 233 (393)
| ... -.+....+...++..|+.+.+... +.+++|+.|..+..-...+-...++... + ..+.
T Consensus 559 G--R~a--GgpV~~~L~L~~gE~Iv~~~~v~~~~~lLlaT~~GyGKrt~lse~~~~~RaGKg-v------------i~Lk 621 (735)
T TIGR01062 559 A--RGQ--GEPLTGKLLLPIGATITNILMYSPNQLLLMASDAGYGFLCNFNDLIARNKAGKA-L------------INLP 621 (735)
T ss_pred C--ccC--CceeEeeecCCCCCEEEEEEEecCCcEEEEEEcCCcEEEEEhHhccccCcCCeE-E------------EEeC
Confidence 2 111 112223344456677887776543 5788899997776654433221111110 0 0010
Q ss_pred cccCccEEEE--EeCC-ceeEEEecCCcEEEEeCCC
Q 016197 234 ELEGVKVKIA--AAGF-LHSACIDENGRVYIFGDRA 266 (393)
Q Consensus 234 ~~~~~~i~~i--~~g~-~~~~~lt~~G~vy~wG~n~ 266 (393)
.+..++.+ ..+. +..++++++|++..+-.+.
T Consensus 622 --~~d~lv~v~~v~~~dd~V~liT~~GrlLrf~v~E 655 (735)
T TIGR01062 622 --ENASVIAPLPVNGDSDMIAAITEAGRMLVFPIDD 655 (735)
T ss_pred --CCCEEEEEEEEcCCCCEEEEEeCCCcEEEEEHHH
Confidence 11122221 1233 2577899999999886554
No 98
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=24.41 E-value=8.6e+02 Score=25.72 Aligned_cols=161 Identities=9% Similarity=-0.018 Sum_probs=81.1
Q ss_pred cCCceEEEEecCCcEEEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEe--cCCceEEEEeCCCcEEEEeCCCCC
Q 016197 130 TGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAA--LGFEQSVAVTGGGKVLSWGAGGSG 207 (393)
Q Consensus 130 ~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~--~g~~~s~~lt~~G~v~~~G~n~~g 207 (393)
.-...++++|++|-|-.--.+.+. +..+..-+++.++.+. .+.+..+++|++|++|.+-.+.--
T Consensus 492 ~~e~v~VilTk~G~IKr~~~~~~~--------------~saikLKegD~L~~~~~~~t~d~LllfTs~Gr~yrf~v~eIP 557 (735)
T TIGR01062 492 PKEPVTIILSKMGWVRSAKGHDID--------------LSTLKYKAGDSEKAIIEGKSNQKVVFIDSTGRSYALDPDNLP 557 (735)
T ss_pred cCcceEEEEecCCEEEeccccccc--------------hhccCcCCCCeEEEEEEecCCCEEEEEECCCeEEEEEhHhcC
Confidence 356677888999866654332211 0112222233344443 445568889999999999765432
Q ss_pred CCCCCCCCCccccccccccccce--eeccccCccEEEEEeCCc--eeEEEecCCcEEEEeCCCCCccccCCCCCcCCCcc
Q 016197 208 RLGHGQESSILGFLRSTSEYTPR--LIKELEGVKVKIAAAGFL--HSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSL 283 (393)
Q Consensus 208 qlg~~~~~~~~~~~~~~~~~~p~--~i~~~~~~~i~~i~~g~~--~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~ 283 (393)
.|++. ..|. .+...++..|+.+.+... ..+++|+.|.....-........-+ ...-..
T Consensus 558 -~GR~a-------------GgpV~~~L~L~~gE~Iv~~~~v~~~~~lLlaT~~GyGKrt~lse~~~~~Ra----GKgvi~ 619 (735)
T TIGR01062 558 -SARGQ-------------GEPLTGKLLLPIGATITNILMYSPNQLLLMASDAGYGFLCNFNDLIARNKA----GKALIN 619 (735)
T ss_pred -cCccC-------------CceeEeeecCCCCCEEEEEEEecCCcEEEEEEcCCcEEEEEhHhccccCcC----CeEEEE
Confidence 12211 1111 122234556777766543 4678888886665432221111000 000001
Q ss_pred ccCCCCcceE--EeeC-ceeEEEEcCCCEEEEeCCCCCCCCC
Q 016197 284 ISKLPYSEEV--VCGG-YHTCVLTSGGELYTWGSNENGCLGI 322 (393)
Q Consensus 284 i~~~~~v~~v--~~g~-~~~~~lt~~g~v~~~G~n~~gqlG~ 322 (393)
++....+..+ ..+. .+.++++++|++..+-.++--+++.
T Consensus 620 Lk~~d~lv~v~~v~~~dd~V~liT~~GrlLrf~v~EIp~~gR 661 (735)
T TIGR01062 620 LPENASVIAPLPVNGDSDMIAAITEAGRMLVFPIDDLPELSK 661 (735)
T ss_pred eCCCCEEEEEEEEcCCCCEEEEEeCCCcEEEEEHHHCCccCC
Confidence 1111222211 1233 3577899999999988766544443
No 99
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=24.00 E-value=9.2e+02 Score=25.90 Aligned_cols=57 Identities=18% Similarity=0.141 Sum_probs=36.4
Q ss_pred cceEEEEEEcCCCCCcCCCCCCCeeeeeeeccccCCceeEEEeCCCeeEEEecCCcEEE
Q 016197 36 QRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYA 94 (393)
Q Consensus 36 ~~~~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~I~~I~~G~~~~~~lt~~G~v~~ 94 (393)
+..+|+++|.+..=+--. ...+...|..+.. .++.|..|++-..+.+.-++++.|-.
T Consensus 24 ~gefi~tcgsdg~ir~~~-~~sd~e~P~ti~~-~g~~v~~ia~~s~~f~~~s~~~tv~~ 80 (933)
T KOG1274|consen 24 DGEFICTCGSDGDIRKWK-TNSDEEEPETIDI-SGELVSSIACYSNHFLTGSEQNTVLR 80 (933)
T ss_pred CCCEEEEecCCCceEEee-cCCcccCCchhhc-cCceeEEEeecccceEEeeccceEEE
Confidence 455888999765422221 1223345555442 56789999999888888888886543
No 100
>PF13938 DUF4213: Domain of unknown function (DUF4213); PDB: 3NPG_A 3L5O_B.
Probab=23.42 E-value=1.1e+02 Score=22.05 Aligned_cols=24 Identities=13% Similarity=0.029 Sum_probs=19.5
Q ss_pred ccCCceeEEEeCCCeeEEEecCCc
Q 016197 68 FEKHSLKALACGGAHTLFLTETGC 91 (393)
Q Consensus 68 ~~~~~I~~I~~G~~~~~~lt~~G~ 91 (393)
.++..|+++..|..++++..++|.
T Consensus 9 ~~~~~V~~~~iG~~~t~V~~~~G~ 32 (87)
T PF13938_consen 9 APDIRVEDVCIGLHWTAVELSDGG 32 (87)
T ss_dssp CGC-EEEEEEEBSSEEEEEETT-E
T ss_pred CCCCEEEEEEEcCCEEEEEeCCCc
Confidence 456789999999999999999983
No 101
>PLN00181 protein SPA1-RELATED; Provisional
Probab=23.02 E-value=9.2e+02 Score=25.58 Aligned_cols=67 Identities=15% Similarity=0.131 Sum_probs=36.0
Q ss_pred ceeEEEeCC---CeeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcCC---ceEEEEecCCcEE
Q 016197 72 SLKALACGG---AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY---HHSSAITVDGELY 145 (393)
Q Consensus 72 ~I~~I~~G~---~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g~---~~~~~lt~~G~vy 145 (393)
.|..++.-. ...+.-..||.|.+|-.... .....+..-...|..++... ...+.-..+|.|.
T Consensus 534 ~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~------------~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~ 601 (793)
T PLN00181 534 KLSGICWNSYIKSQVASSNFEGVVQVWDVARS------------QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVK 601 (793)
T ss_pred ceeeEEeccCCCCEEEEEeCCCeEEEEECCCC------------eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEE
Confidence 455555432 23344467899999954321 11112222234677777642 2344456688999
Q ss_pred EEecC
Q 016197 146 MWGKN 150 (393)
Q Consensus 146 ~~G~n 150 (393)
.|-.+
T Consensus 602 iWd~~ 606 (793)
T PLN00181 602 LWSIN 606 (793)
T ss_pred EEECC
Confidence 99654
No 102
>PF11399 DUF3192: Protein of unknown function (DUF3192); InterPro: IPR021534 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=22.21 E-value=67 Score=24.19 Aligned_cols=24 Identities=21% Similarity=0.363 Sum_probs=19.3
Q ss_pred eCceeEEEEcCCCEEEEeCCCCCC
Q 016197 296 GGYHTCVLTSGGELYTWGSNENGC 319 (393)
Q Consensus 296 g~~~~~~lt~~g~v~~~G~n~~gq 319 (393)
-+..+-+|.+|++|.+||...+.|
T Consensus 78 kDECTplvF~n~~LvgWG~~ay~~ 101 (102)
T PF11399_consen 78 KDECTPLVFKNGKLVGWGDDAYSQ 101 (102)
T ss_pred CCceEEEEEECCEEEEEcHHhhhc
Confidence 366777899999999999876644
No 103
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=22.10 E-value=4.1e+02 Score=25.37 Aligned_cols=62 Identities=21% Similarity=0.265 Sum_probs=43.8
Q ss_pred cEEEEEcCCce---EEEEecCCcEEEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecCCceEEEEeCCCcEEE
Q 016197 124 EVVQISTGYHH---SSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLS 200 (393)
Q Consensus 124 ~i~~i~~g~~~---~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~s~~lt~~G~v~~ 200 (393)
.+..++++.++ .+++..+|.+..|..+.. + .++ .....+.+|..-+....|++..|+||+
T Consensus 161 ~~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~W------------t----~l~-~~~~~~~DIi~~kGkfYAvD~~G~l~~ 223 (373)
T PLN03215 161 ALVKVKEGDNHRDGVLGIGRDGKINYWDGNVL------------K----ALK-QMGYHFSDIIVHKGQTYALDSIGIVYW 223 (373)
T ss_pred EEEEeecCCCcceEEEEEeecCcEeeecCCee------------e----Ecc-CCCceeeEEEEECCEEEEEcCCCeEEE
Confidence 44456777775 778888999988953211 1 121 244568888888888999999999999
Q ss_pred Ee
Q 016197 201 WG 202 (393)
Q Consensus 201 ~G 202 (393)
+.
T Consensus 224 i~ 225 (373)
T PLN03215 224 IN 225 (373)
T ss_pred Ee
Confidence 86
No 104
>PF11399 DUF3192: Protein of unknown function (DUF3192); InterPro: IPR021534 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=21.94 E-value=72 Score=24.04 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=18.7
Q ss_pred CceEEEEeCCCcEEEEeCCCCCC
Q 016197 186 FEQSVAVTGGGKVLSWGAGGSGR 208 (393)
Q Consensus 186 ~~~s~~lt~~G~v~~~G~n~~gq 208 (393)
+.++-+|-.+|+|..||...+.|
T Consensus 79 DECTplvF~n~~LvgWG~~ay~~ 101 (102)
T PF11399_consen 79 DECTPLVFKNGKLVGWGDDAYSQ 101 (102)
T ss_pred CceEEEEEECCEEEEEcHHhhhc
Confidence 46778888999999999876654
No 105
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=21.69 E-value=9.7e+02 Score=25.36 Aligned_cols=166 Identities=9% Similarity=-0.037 Sum_probs=0.0
Q ss_pred EEEEcCCceEEEEecCCcEEEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecCCc------eEEEEeCCCcEE
Q 016197 126 VQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFE------QSVAVTGGGKVL 199 (393)
Q Consensus 126 ~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~------~s~~lt~~G~v~ 199 (393)
..++.+.++.+++|++|++|.+-.+.-...+....-. +....+..-++..|+.+.+-.. +.+++|++|.+.
T Consensus 536 v~~~~~~d~IllfT~~Gkv~r~~~~eIp~~gr~a~Gv---~Ivk~i~L~~~D~Iv~~~~v~~~~~~~~~ll~vT~~G~~K 612 (738)
T TIGR01061 536 QTIANTTDQILIFTSLGNIINIPVHKLADIRWKDLGE---HLSNKITFDENETIVFVGTMNEFDVDQPILVLASKLGMVK 612 (738)
T ss_pred EEEecCCCEEEEEeCCCcEEEEEHHHCcCCCCCCCCc---ChhhcccCCCCCeEEEEEEeccccCCCcEEEEEecCCeEE
Q ss_pred EEeCCCCCCCCCCCCCCccccccccccccceeeccccCccEEEEEeCCceeEEEecCCcEEEEeCCCCCccccCCCCCcC
Q 016197 200 SWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHAR 279 (393)
Q Consensus 200 ~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~ 279 (393)
-.-...+... .+.. ..... .+..-...-...+....+..+++|.+|.+..+-.+.....|-.......
T Consensus 613 Rt~l~e~~~~-r~~k---------Gv~~i--kLk~~d~lV~a~~v~~~d~IlliT~~G~~iRf~~~dI~~~gR~a~GV~~ 680 (738)
T TIGR01061 613 RIELTELNIK-RNSK---------ATLCI--KLKDKDHLISAFLQQKDKLICLVSDLGYALVFHTNEIPVVGAKAAGVKG 680 (738)
T ss_pred EeEHHHhccc-cCCC---------ceEEE--eccCCCcEEEEEEeCCCCEEEEEECCCeEEEEEHHHCCcccccCCCeEE
Q ss_pred CCccccCCCCcceEEeeCce--eEEEEcCCC
Q 016197 280 RPSLISKLPYSEEVVCGGYH--TCVLTSGGE 308 (393)
Q Consensus 280 ~p~~i~~~~~v~~v~~g~~~--~~~lt~~g~ 308 (393)
..+...+.|..+..-... .+++|++|.
T Consensus 681 --I~L~~~D~Vv~~~~v~~~~~ll~vTe~G~ 709 (738)
T TIGR01061 681 --MKLKEDDQVKSGVIFEANESLVLLTQRGS 709 (738)
T ss_pred --EEeCCCCEEEEEEEecCCCeEEEEECCCc
No 106
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=21.63 E-value=3.5e+02 Score=25.12 Aligned_cols=17 Identities=29% Similarity=0.268 Sum_probs=12.4
Q ss_pred eEEEEeCCCcEEEEeCC
Q 016197 188 QSVAVTGGGKVLSWGAG 204 (393)
Q Consensus 188 ~s~~lt~~G~v~~~G~n 204 (393)
+..++.-+|+||++|-.
T Consensus 314 ~~~~~~~~~~iyv~GG~ 330 (346)
T TIGR03547 314 YGVSVSWNNGVLLIGGE 330 (346)
T ss_pred eeEEEEcCCEEEEEecc
Confidence 34456678999999853
No 107
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=21.43 E-value=6e+02 Score=22.83 Aligned_cols=40 Identities=13% Similarity=0.154 Sum_probs=25.1
Q ss_pred CeeeeeeeccccCCcee-EEEeCCCeeEEE-ecCCcEEEEecC
Q 016197 58 SRWRPVVCSAFEKHSLK-ALACGGAHTLFL-TETGCVYATGLN 98 (393)
Q Consensus 58 ~~~~p~~~~~~~~~~I~-~I~~G~~~~~~l-t~~G~v~~wG~n 98 (393)
....|.++..-.+ .|+ -+-|-.+++++- ++++.|-+|-.-
T Consensus 132 p~App~E~~ghtg-~Ir~v~wc~eD~~iLSSadd~tVRLWD~r 173 (334)
T KOG0278|consen 132 PKAPPKEISGHTG-GIRTVLWCHEDKCILSSADDKTVRLWDHR 173 (334)
T ss_pred CCCCchhhcCCCC-cceeEEEeccCceEEeeccCCceEEEEec
Confidence 3455666654433 354 445666676665 788899999753
No 108
>PF07312 DUF1459: Protein of unknown function (DUF1459); InterPro: IPR009924 This family consists of several hypothetical Caenorhabditis elegans proteins of around 85 residues in length. The function of this family is unknown.
Probab=21.39 E-value=88 Score=22.18 Aligned_cols=11 Identities=18% Similarity=0.474 Sum_probs=8.2
Q ss_pred CCcE-EEEecCC
Q 016197 358 EGKI-LTWGWGG 368 (393)
Q Consensus 358 ~g~v-~~wG~~~ 368 (393)
--++ |+||+|.
T Consensus 55 YPsv~waWGSNK 66 (84)
T PF07312_consen 55 YPSVYWAWGSNK 66 (84)
T ss_pred CcceeeeeccCC
Confidence 4556 9999974
No 109
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=21.20 E-value=3.9e+02 Score=20.55 Aligned_cols=65 Identities=18% Similarity=0.105 Sum_probs=41.7
Q ss_pred eeEEEeCCCeeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcCCceEEEEecCCcEEEE
Q 016197 73 LKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMW 147 (393)
Q Consensus 73 I~~I~~G~~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g~~~~~~lt~~G~vy~~ 147 (393)
.+++-|-..+.+-+..||.|-.-+... ..........+. . ..|.--++-....++++++|+||+-
T Consensus 2 ~~~Ly~~~~~~L~i~~~g~V~gt~~~~--------~~~s~~~i~~~~-~-g~V~i~~~~s~~YLcmn~~G~ly~~ 66 (122)
T PF00167_consen 2 HVQLYCRTGYFLQINPNGTVDGTGDDN--------SPYSVFEIHSVG-F-GVVRIRGVKSCRYLCMNKCGRLYGS 66 (122)
T ss_dssp EEEEEETTSEEEEEETTSBEEEESSTT--------STTGEEEEEEEE-T-TEEEEEETTTTEEEEEBTTSBEEEE
T ss_pred CEEEEECCCeEEEECCCCeEeCCCCcC--------cceeEEEEEecc-c-eEEEEEEecceEEEEECCCCeEccc
Confidence 577888778889999999998776531 112222222222 1 2333334455778999999999984
No 110
>PF06204 CBM_X: Putative carbohydrate binding domain ; InterPro: IPR009342 This domain is conserved in enzymes that have carbohydrates as substrate, and may be a carbohydrate-binding domain.; PDB: 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A 3QG0_B 3AFJ_A 3ACS_A 1V7V_A 1V7X_A ....
Probab=21.06 E-value=2.9e+02 Score=18.94 Aligned_cols=30 Identities=27% Similarity=0.355 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCceEEEEecCCcEEEEecCC
Q 016197 122 KKEVVQISTGYHHSSAITVDGELYMWGKNS 151 (393)
Q Consensus 122 ~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~ 151 (393)
+.+.+.+-+...+.++|++.|.-|+|-.+.
T Consensus 24 p~P~~n~LsNg~y~~mvt~~G~GySw~~~~ 53 (66)
T PF06204_consen 24 PAPWVNVLSNGSYGVMVTNSGSGYSWAKNS 53 (66)
T ss_dssp SS--EEEE-SSSEEEEEETTSBEEEEES-T
T ss_pred CCCEEEEeeCCcEEEEEcCCCceeeccccc
Confidence 347777888889999999999999997764
No 111
>PF04025 DUF370: Domain of unknown function (DUF370); InterPro: IPR007169 This is a bacterial family of unknown function.
Probab=20.84 E-value=1.6e+02 Score=20.69 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=22.8
Q ss_pred cCCceeEEEeCCC-eeEEEecCCcEEEEe
Q 016197 69 EKHSLKALACGGA-HTLFLTETGCVYATG 96 (393)
Q Consensus 69 ~~~~I~~I~~G~~-~~~~lt~~G~v~~wG 96 (393)
+..+++++..|+. -+++++++|+|+.-.
T Consensus 35 ~~~~lIdaT~GrktrsviitdsghviLSa 63 (73)
T PF04025_consen 35 EEGKLIDATYGRKTRSVIITDSGHVILSA 63 (73)
T ss_pred HcCcEEEeeCCCceeEEEEEcCCcEEEee
Confidence 4467899999986 488899999999754
Done!