Query 016197
Match_columns 393
No_of_seqs 172 out of 2078
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 09:32:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016197.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016197hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4d9s_A UVB-resistance protein 100.0 1E-68 3.4E-73 514.7 40.2 345 20-391 19-368 (406)
2 3kci_A Probable E3 ubiquitin-p 100.0 3.8E-68 1.3E-72 508.1 33.5 342 25-391 7-356 (389)
3 1a12_A RCC1, regulator of chro 100.0 1.1E-64 3.8E-69 488.1 37.0 341 27-390 18-375 (413)
4 3mvd_K Regulator of chromosome 100.0 8.5E-64 2.9E-68 483.7 38.6 347 21-391 28-385 (423)
5 3of7_A Regulator of chromosome 100.0 2.5E-63 8.7E-68 486.1 35.8 331 35-388 26-413 (473)
6 3kci_A Probable E3 ubiquitin-p 100.0 1.9E-61 6.5E-66 461.7 31.3 321 22-357 58-385 (389)
7 1a12_A RCC1, regulator of chro 100.0 4.2E-60 1.4E-64 456.2 34.8 328 20-361 62-412 (413)
8 4d9s_A UVB-resistance protein 100.0 1.5E-59 5.1E-64 450.9 36.1 298 69-391 14-316 (406)
9 3of7_A Regulator of chromosome 100.0 1.1E-57 3.7E-62 446.2 34.5 329 19-357 69-448 (473)
10 3mvd_K Regulator of chromosome 100.0 4.5E-57 1.5E-61 436.7 37.2 325 20-360 78-420 (423)
11 3qhy_B Beta-lactamase inhibito 100.0 2.8E-49 9.6E-54 360.1 29.7 250 39-386 3-252 (282)
12 3qhy_B Beta-lactamase inhibito 100.0 1.3E-47 4.3E-52 349.1 28.3 249 20-362 27-276 (282)
13 1p22_A F-BOX/WD-repeat protein 97.7 0.034 1.2E-06 52.4 27.2 239 70-367 173-413 (435)
14 2ovr_B FBW7, F-BOX/WD repeat p 97.2 0.14 4.7E-06 48.3 32.5 228 70-366 159-389 (445)
15 2ovr_B FBW7, F-BOX/WD repeat p 96.9 0.29 9.9E-06 46.0 29.9 192 71-316 200-391 (445)
16 1p22_A F-BOX/WD-repeat protein 96.8 0.36 1.2E-05 45.2 31.3 228 71-366 134-363 (435)
17 4gbf_A Phikz131; 7-bladed beta 96.2 0.012 4.1E-07 50.3 7.0 72 71-155 309-380 (400)
18 4aez_A CDC20, WD repeat-contai 96.0 0.91 3.1E-05 41.9 26.0 138 31-204 106-247 (401)
19 1k3i_A Galactose oxidase precu 95.8 0.29 9.8E-06 49.0 16.7 68 297-367 457-530 (656)
20 4gbf_A Phikz131; 7-bladed beta 95.8 0.028 9.7E-07 48.0 7.5 71 124-209 310-380 (400)
21 3mmy_A MRNA export factor; mRN 95.3 1.5 5.3E-05 39.1 22.4 195 69-316 38-247 (368)
22 3k26_A Polycomb protein EED; W 94.9 2 6.8E-05 38.3 29.0 263 71-366 70-364 (366)
23 2zwa_A Leucine carboxyl methyl 94.8 2.5 8.5E-05 42.6 19.9 64 80-150 441-509 (695)
24 1gxr_A ESG1, transducin-like e 94.8 2 6.7E-05 37.8 27.7 225 70-365 97-334 (337)
25 2zwa_A Leucine carboxyl methyl 94.4 0.93 3.2E-05 45.7 15.7 19 297-315 598-616 (695)
26 3v7d_B Cell division control p 94.3 3.5 0.00012 38.5 31.0 240 70-366 162-419 (464)
27 3odt_A Protein DOA1; ubiquitin 94.3 2.5 8.5E-05 36.7 30.2 227 70-367 59-295 (313)
28 1gxr_A ESG1, transducin-like e 94.1 2.9 9.8E-05 36.7 33.0 269 32-367 15-295 (337)
29 3odt_A Protein DOA1; ubiquitin 93.6 3.3 0.00011 35.9 25.7 225 70-366 18-253 (313)
30 4aow_A Guanine nucleotide-bind 93.5 3.7 0.00013 36.2 27.0 111 239-365 217-334 (340)
31 3k26_A Polycomb protein EED; W 92.5 5.4 0.00019 35.3 22.7 206 70-316 18-260 (366)
32 3v7d_B Cell division control p 92.2 7.4 0.00025 36.2 31.1 239 71-366 204-461 (464)
33 1sq9_A Antiviral protein SKI8; 91.0 8.6 0.00029 34.7 23.8 110 29-151 27-157 (397)
34 3jrp_A Fusion protein of prote 90.6 8.9 0.00031 34.1 28.2 241 71-367 12-286 (379)
35 2xyi_A Probable histone-bindin 89.9 12 0.00041 34.6 24.2 248 29-315 142-409 (430)
36 1yfq_A Cell cycle arrest prote 89.4 10 0.00036 33.2 24.7 234 30-315 25-281 (342)
37 1pgu_A Actin interacting prote 89.4 16 0.00053 35.2 26.1 188 71-315 161-365 (615)
38 3i2n_A WD repeat-containing pr 89.1 11 0.00039 33.1 24.6 236 70-367 18-290 (357)
39 3i2n_A WD repeat-containing pr 88.9 12 0.0004 33.0 27.2 244 70-366 65-351 (357)
40 3uc1_A DNA gyrase subunit A; D 88.7 13 0.00045 33.4 23.6 222 77-322 50-285 (327)
41 2aq5_A Coronin-1A; WD40 repeat 87.4 17 0.00057 33.1 25.6 148 30-203 49-205 (402)
42 3mkq_A Coatomer beta'-subunit; 87.1 27 0.00091 35.1 27.1 227 71-367 14-258 (814)
43 3vl1_A 26S proteasome regulato 86.0 20 0.00067 32.5 30.5 99 80-204 109-211 (420)
44 3sfz_A APAF-1, apoptotic pepti 85.9 40 0.0014 35.9 26.6 197 71-316 1004-1207(1249)
45 3jrp_A Fusion protein of prote 85.7 18 0.00063 31.9 27.6 202 70-315 55-286 (379)
46 3p6j_A De novo designed beta-t 84.5 13 0.00043 29.0 12.5 110 69-201 28-139 (142)
47 4gga_A P55CDC, cell division c 84.0 25 0.00087 32.1 29.4 111 71-204 148-260 (420)
48 2xyi_A Probable histone-bindin 84.0 26 0.00089 32.2 24.0 259 71-366 129-408 (430)
49 3mmy_A MRNA export factor; mRN 83.9 22 0.00074 31.2 24.0 107 70-204 86-198 (368)
50 3no0_A DNA gyrase subunit A; D 83.9 21 0.00072 31.1 21.3 218 69-322 22-252 (276)
51 3jro_A Fusion protein of prote 83.3 40 0.0014 33.9 26.3 198 71-316 10-238 (753)
52 4a11_B DNA excision repair pro 83.0 25 0.00087 31.4 31.1 207 69-316 42-276 (408)
53 1pgu_A Actin interacting prote 82.5 35 0.0012 32.6 27.6 145 179-366 449-612 (615)
54 1k8k_C P40, ARP2/3 complex 41 82.3 26 0.00088 30.9 26.7 247 69-367 7-273 (372)
55 4g56_B MGC81050 protein; prote 82.1 28 0.00095 31.2 30.2 228 72-366 96-341 (357)
56 1zgk_A Kelch-like ECH-associat 81.3 23 0.0008 30.9 12.7 17 187-204 161-177 (308)
57 3no0_A DNA gyrase subunit A; D 81.0 27 0.00093 30.4 20.3 196 131-363 34-239 (276)
58 1yfq_A Cell cycle arrest prote 80.6 28 0.00096 30.3 28.7 204 70-317 11-226 (342)
59 3jro_A Fusion protein of prote 80.4 51 0.0017 33.1 26.9 203 70-316 53-285 (753)
60 4aez_A CDC20, WD repeat-contai 79.9 35 0.0012 30.9 27.5 187 73-315 96-292 (401)
61 1xip_A Nucleoporin NUP159; bet 79.6 28 0.00094 32.1 12.8 98 73-201 90-187 (388)
62 4gqb_B Methylosome protein 50; 79.5 34 0.0012 30.5 30.5 266 34-366 38-329 (344)
63 3zwl_B Eukaryotic translation 79.2 32 0.0011 30.1 29.2 161 70-265 74-248 (369)
64 1zgk_A Kelch-like ECH-associat 79.1 32 0.0011 30.0 14.6 17 350-366 254-270 (308)
65 2uvk_A YJHT; unknown function, 77.8 13 0.00046 33.2 10.1 17 351-367 309-325 (357)
66 2xzm_R RACK1; ribosome, transl 77.4 37 0.0013 29.9 29.8 104 30-150 41-148 (343)
67 4a11_B DNA excision repair pro 76.9 40 0.0014 30.0 32.4 249 70-367 99-364 (408)
68 1r5m_A SIR4-interacting protei 76.7 42 0.0014 30.0 21.6 108 71-204 248-360 (425)
69 3vl1_A 26S proteasome regulato 76.5 43 0.0015 30.1 31.8 70 69-150 138-211 (420)
70 3sfz_A APAF-1, apoptotic pepti 76.4 84 0.0029 33.4 22.1 190 124-366 1005-1205(1249)
71 1suu_A DNA gyrase subunit A; t 74.4 46 0.0016 29.5 20.6 219 80-323 8-238 (312)
72 1suu_A DNA gyrase subunit A; t 74.3 46 0.0016 29.4 25.6 227 69-319 45-286 (312)
73 1sq9_A Antiviral protein SKI8; 74.1 48 0.0016 29.5 25.8 122 70-205 16-157 (397)
74 3dwl_C Actin-related protein 2 72.9 50 0.0017 29.2 20.6 157 71-265 12-176 (377)
75 1wp5_A Topoisomerase IV; broke 72.8 52 0.0018 29.3 23.7 224 76-322 46-283 (323)
76 1k3i_A Galactose oxidase precu 71.9 12 0.00041 37.1 8.7 60 249-314 246-305 (656)
77 3zwl_B Eukaryotic translation 71.3 52 0.0018 28.7 22.5 78 113-204 23-104 (369)
78 4g56_B MGC81050 protein; prote 68.1 65 0.0022 28.6 29.4 234 71-366 43-299 (357)
79 2ymu_A WD-40 repeat protein; u 68.0 83 0.0028 29.8 29.7 221 71-366 304-537 (577)
80 3uc1_A DNA gyrase subunit A; D 68.0 67 0.0023 28.7 21.6 215 26-268 51-281 (327)
81 1zi0_A DNA gyrase subunit A; b 67.6 65 0.0022 28.4 26.9 220 76-319 49-280 (307)
82 3mkq_A Coatomer beta'-subunit; 67.2 1E+02 0.0036 30.6 29.6 190 71-316 56-259 (814)
83 1xip_A Nucleoporin NUP159; bet 66.9 78 0.0027 29.0 14.0 75 113-203 79-153 (388)
84 3l6v_A GYRA, DNA gyrase subuni 66.0 79 0.0027 28.8 27.4 134 70-212 45-187 (370)
85 1zi0_A DNA gyrase subunit A; b 65.3 72 0.0025 28.1 22.3 214 128-366 49-275 (307)
86 3ii7_A Kelch-like protein 7; p 65.3 67 0.0023 27.7 16.0 16 187-203 193-208 (306)
87 2pm9_A Protein WEB1, protein t 63.7 81 0.0028 28.1 21.5 202 70-317 113-338 (416)
88 2woz_A Kelch repeat and BTB do 63.7 8.2 0.00028 34.1 5.0 17 350-366 198-214 (318)
89 1wp5_A Topoisomerase IV; broke 63.5 81 0.0028 28.0 22.3 217 128-366 46-275 (323)
90 2vpj_A Kelch-like protein 12; 61.2 78 0.0027 27.1 17.6 17 350-366 245-261 (301)
91 4gqb_B Methylosome protein 50; 58.6 98 0.0033 27.4 26.8 187 71-315 128-330 (344)
92 2ymu_A WD-40 repeat protein; u 56.9 1.3E+02 0.0045 28.3 29.1 218 71-364 345-576 (577)
93 1r5m_A SIR4-interacting protei 56.8 1.1E+02 0.0036 27.2 30.3 67 72-151 110-180 (425)
94 4asc_A Kelch repeat and BTB do 56.7 98 0.0033 26.8 14.9 17 187-204 189-205 (315)
95 2vpj_A Kelch-like protein 12; 56.4 95 0.0032 26.5 19.3 16 187-203 152-167 (301)
96 3ii7_A Kelch-like protein 7; p 55.4 1E+02 0.0034 26.5 16.9 18 297-315 239-256 (306)
97 1vyh_C Platelet-activating fac 55.0 1.2E+02 0.0042 27.4 28.3 68 71-150 151-222 (410)
98 3f3f_A Nucleoporin SEH1; struc 53.8 1E+02 0.0035 26.2 27.9 122 71-205 12-143 (351)
99 4asc_A Kelch repeat and BTB do 51.3 22 0.00074 31.2 5.6 17 350-366 188-204 (315)
100 4ery_A WD repeat-containing pr 50.6 1.2E+02 0.004 25.9 24.1 109 71-204 108-222 (312)
101 2pm9_A Protein WEB1, protein t 50.3 1.4E+02 0.0046 26.5 27.4 240 71-368 68-337 (416)
102 2woz_A Kelch repeat and BTB do 50.3 96 0.0033 26.9 9.8 17 133-150 151-167 (318)
103 1zvt_A Topoisomerase IV subuni 48.7 1.3E+02 0.0043 25.7 14.9 122 129-271 41-168 (256)
104 4ggc_A P55CDC, cell division c 48.5 1.2E+02 0.0042 25.5 29.4 111 71-204 68-180 (318)
105 3frx_A Guanine nucleotide-bind 48.2 1.3E+02 0.0046 25.8 26.4 102 29-149 31-136 (319)
106 1erj_A Transcriptional repress 47.7 1.5E+02 0.0053 26.4 20.9 125 72-203 208-339 (393)
107 3q7x_A De novo designed beta-t 47.6 89 0.003 23.6 10.6 104 75-201 10-114 (132)
108 2xn4_A Kelch-like protein 2; s 47.1 1.3E+02 0.0046 25.6 14.2 17 187-204 197-213 (302)
109 3gre_A Serine/threonine-protei 46.4 1.6E+02 0.0056 26.4 20.1 110 71-205 169-292 (437)
110 1k8k_C P40, ARP2/3 complex 41 45.7 1.5E+02 0.0051 25.7 29.5 211 70-316 52-274 (372)
111 3ei3_B DNA damage-binding prot 45.3 1.6E+02 0.0054 25.9 23.8 193 71-316 74-282 (383)
112 3dm0_A Maltose-binding peripla 44.5 2.3E+02 0.008 27.6 26.8 276 30-365 397-690 (694)
113 3q7m_A Lipoprotein YFGL, BAMB; 44.0 1.7E+02 0.0058 25.8 12.9 17 296-312 358-374 (376)
114 3l6v_A GYRA, DNA gyrase subuni 43.6 1.9E+02 0.0064 26.2 22.7 123 128-268 53-182 (370)
115 4ery_A WD repeat-containing pr 38.9 1.8E+02 0.0061 24.6 30.8 107 71-203 66-178 (312)
116 1q7f_A NHL, brain tumor CG1071 38.2 1.7E+02 0.006 24.3 18.5 195 82-322 80-286 (286)
117 3dw8_B Serine/threonine-protei 38.2 2.2E+02 0.0075 25.5 22.3 77 71-151 178-258 (447)
118 2aq5_A Coronin-1A; WD40 repeat 36.9 2.2E+02 0.0076 25.2 28.3 156 75-265 39-206 (402)
119 1zvu_A Topoisomerase IV subuni 35.1 3.5E+02 0.012 27.0 11.5 122 129-271 511-638 (716)
120 4e54_B DNA damage-binding prot 33.3 2.7E+02 0.0093 25.1 21.4 67 71-149 120-194 (435)
121 4aow_A Guanine nucleotide-bind 29.0 2.6E+02 0.009 23.6 28.2 113 71-203 39-157 (340)
122 3nvq_A Semaphorin-7A; beta-pro 28.8 2E+02 0.0068 28.0 8.6 71 247-317 30-104 (590)
123 1vyh_C Platelet-activating fac 28.8 3.2E+02 0.011 24.5 25.4 108 71-204 109-222 (410)
124 3gre_A Serine/threonine-protei 28.2 3.2E+02 0.011 24.3 26.5 121 70-204 111-244 (437)
125 1got_B GT-beta; complex (GTP-b 28.1 2.9E+02 0.01 23.8 30.6 230 71-364 98-339 (340)
126 3fvz_A Peptidyl-glycine alpha- 27.7 2.9E+02 0.0098 23.8 9.2 17 187-203 294-310 (329)
127 2xn4_A Kelch-like protein 2; s 26.5 2.9E+02 0.01 23.3 17.6 18 298-316 244-261 (302)
128 3ei3_B DNA damage-binding prot 25.1 3.4E+02 0.012 23.6 31.3 155 69-266 117-282 (383)
129 3p6j_A De novo designed beta-t 24.2 2.4E+02 0.0082 21.6 11.1 104 179-311 32-138 (142)
130 1zvt_A Topoisomerase IV subuni 23.0 3.4E+02 0.012 22.9 17.2 125 182-322 40-169 (256)
131 3q7x_A De novo designed beta-t 22.0 2.5E+02 0.0087 21.0 10.2 64 179-262 8-72 (132)
132 1rwi_B Serine/threonine-protei 22.0 3.2E+02 0.011 22.2 19.8 14 188-201 111-124 (270)
133 3f3f_A Nucleoporin SEH1; struc 21.7 3.5E+02 0.012 22.5 26.9 111 30-151 25-143 (351)
134 2ynn_A Coatomer subunit beta'; 21.2 3.7E+02 0.013 22.6 29.0 227 71-366 14-257 (304)
No 1
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=1e-68 Score=514.68 Aligned_cols=345 Identities=33% Similarity=0.591 Sum_probs=314.3
Q ss_pred ccccceeeeEeeeccccceEEEEEEcCCCCCcCCCCCCCeeeeeeeccccCCceeEEEeCCCeeEEEecCC-cEEEEecC
Q 016197 20 LGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETG-CVYATGLN 98 (393)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~I~~I~~G~~~~~~lt~~G-~v~~wG~n 98 (393)
...+++..|.++++ .++.||+||.|.+||||.++..+...|.++..+.+.+|++|+||..|+++|+++| +||+||.|
T Consensus 19 ~~ia~G~~hs~al~--~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG~n 96 (406)
T 4d9s_A 19 LIISAGASHSVALL--SGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWG 96 (406)
T ss_dssp EEEEECSSEEEEEE--TTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEECC
T ss_pred EEEecCCCeEEEEE--eCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEcCC
Confidence 45566667777776 6899999999999999999999999999999999899999999999999999886 99999999
Q ss_pred CCeeccCCCCCCceecceEeccCCC-cEEEEEcCCceEEEEecCCcEEEEecCCCCCCCCCCCCCcccccCeEeccCCCc
Q 016197 99 DFGQLGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGI 177 (393)
Q Consensus 99 ~~g~lg~~~~~~~~~~p~~i~~~~~-~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~ 177 (393)
.++|||.+.. .....|.++..+.. +|++|+||..|+++|+++|+||+||.|.+||||.+.... ...|.++..+.+.
T Consensus 97 ~~GqLG~g~~-~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~--~~~p~~v~~~~~~ 173 (406)
T 4d9s_A 97 DFGRLGHGNS-SDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTED--SLVPQKIQAFEGI 173 (406)
T ss_dssp GGGTTCSSSC-CCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCC--EEEEEECGGGTTC
T ss_pred CCcCCCCCCC-CccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCC--cccceEecccCCC
Confidence 9999999854 45577888876665 899999999999999999999999999999999988765 5678888888888
Q ss_pred eEEEEecCCceEEEEeCCCcEEEEeCCCCCCCCCCCCCCccccccccccccceeeccccCccEEEEEeCCceeEEEecCC
Q 016197 178 FTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENG 257 (393)
Q Consensus 178 ~i~~i~~g~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G 257 (393)
+|++|+||.+|+++|+++|+||+||.|.++|||.+.. .....|.++..+...+|++|+||.+|+++|+++|
T Consensus 174 ~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~---------~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G 244 (406)
T 4d9s_A 174 RIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDR---------TDRLVPERVTSTGGEKMSMVACGWRHTISVSYSG 244 (406)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSS---------CCEEEEEECCCSTTCCEEEEEECSSEEEEEETTC
T ss_pred cEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCC---------CCcCccEEecccCCceEEEEEECCCcEEEEcCCC
Confidence 9999999999999999999999999999999999876 4456788888787789999999999999999999
Q ss_pred cEEEEeCCCCCccccCCCCCcCCCccccCCCC--cceEEeeCceeEEEEcCCCEEEEeCCCCCCCCCCCCCCccCceeec
Q 016197 258 RVYIFGDRAVDKMLFQEGNHARRPSLISKLPY--SEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQ 335 (393)
Q Consensus 258 ~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~--v~~v~~g~~~~~~lt~~g~v~~~G~n~~gqlG~g~~~~~~~p~~v~ 335 (393)
+||+||.|.++|||.++......|.++..+.+ |++|+||.+|+++|+++|+||+||.|.+||||.++......|.++.
T Consensus 245 ~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~ 324 (406)
T 4d9s_A 245 ALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVR 324 (406)
T ss_dssp CEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEEC
T ss_pred CEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEe
Confidence 99999999999999998888888998887765 9999999999999999999999999999999999998888999997
Q ss_pred CCCCCCCeEEEEeCCCceEEEE-CCcEEEEecCCCCCCcccCCCCCCCCCCCCCCCC
Q 016197 336 GPFSESPVDQVSCGWKHTAAIS-EGKILTWGWGGSHGTFSEDGHSSGGQLDRGQLTP 391 (393)
Q Consensus 336 ~~~~~~~i~~i~~G~~~t~~l~-~g~v~~wG~~~~~~~~~~~~~n~~gqlg~g~~~~ 391 (393)
. +...+|++|+||.+|+++++ +|+||+||+ |.+||||+|+..+
T Consensus 325 ~-~~~~~v~~va~G~~hs~alt~~G~v~~wG~------------n~~GqLG~g~~~~ 368 (406)
T 4d9s_A 325 F-PDDQKVVQVSCGWRHTLAVTERNNVFAWGR------------GTNGQLGIGESVD 368 (406)
T ss_dssp C-GGGCCEEEEEECSSEEEEEETTSCEEEEEC------------CTTSTTCSSSCCC
T ss_pred c-cCCCcEEEEEeCCCeEEEEeCCCCEEEecC------------CCCCccCCCCCCC
Confidence 5 35669999999999999999 999999999 7999999998765
No 2
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=3.8e-68 Score=508.06 Aligned_cols=342 Identities=29% Similarity=0.495 Sum_probs=301.2
Q ss_pred eeeeEeeeccccceEEEEEEcCCCCCcCCCCCCCeeeeeeeccccCCceeEEEeCCCeeEEEecCCcEEEEecCCCeecc
Q 016197 25 GICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLG 104 (393)
Q Consensus 25 ~~~~~~~~~~~~~~~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~I~~I~~G~~~~~~lt~~G~v~~wG~n~~g~lg 104 (393)
.+.+..+...+.++.||+||.|.+||||.++..+...|.++..+...+|++|++|..|+++|+++|+||+||.|.++|||
T Consensus 7 ~~~~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG 86 (389)
T 3kci_A 7 HSSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLG 86 (389)
T ss_dssp --------------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTS
T ss_pred ccCcccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCC
Confidence 34556666777999999999999999999988889999999988888999999999999999999999999999999999
Q ss_pred CCCCCCceecceEeccCCC---cEEEEEcCCceEEEEecCCcEEEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEE
Q 016197 105 ISENIGYSLEPLRISGLKK---EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQ 181 (393)
Q Consensus 105 ~~~~~~~~~~p~~i~~~~~---~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~ 181 (393)
.+.. .....|.+++.+.. ++++|+||..|+++|+++|+||+||.|.+||||.++... ...|..+..+.+.+|++
T Consensus 87 ~g~~-~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~--~~~p~~v~~l~~~~i~~ 163 (389)
T 3kci_A 87 IGGT-ESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSP--CDRPRVIESLRGIEVVD 163 (389)
T ss_dssp SSSS-CCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCC--EEEEEECGGGTTSCEEE
T ss_pred CCCc-CCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCcc--CcCCeEecccCCCeEEE
Confidence 9854 45577888876554 568899999999999999999999999999999987665 56788888888889999
Q ss_pred EecCCceEEEEeCCCcEEEEeCCCCCCCCCCCCCCccccccccccccceeeccccCccEEEEEeCC--ceeEEEecCCcE
Q 016197 182 AALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGF--LHSACIDENGRV 259 (393)
Q Consensus 182 i~~g~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~--~~~~~lt~~G~v 259 (393)
|+||..|+++|+++|+||+||.|.++|||.+.. .....|.++..+...+|++|+||. .|+++++++|+|
T Consensus 164 va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~---------~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v 234 (389)
T 3kci_A 164 VAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDS---------EDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTV 234 (389)
T ss_dssp EEECSSEEEEEETTSCEEEEECCGGGTTCSSSC---------CCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEE
T ss_pred EEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCC---------cccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEE
Confidence 999999999999999999999999999999876 445678888888888999999995 899999999999
Q ss_pred EEEeCCCCCccccCCCCCcCCCccccCCCC--cceEEeeCceeEEEEcCCCEEEEeCCCCCCCCCCCCCCccCceeecCC
Q 016197 260 YIFGDRAVDKMLFQEGNHARRPSLISKLPY--SEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGP 337 (393)
Q Consensus 260 y~wG~n~~gqlg~~~~~~~~~p~~i~~~~~--v~~v~~g~~~~~~lt~~g~v~~~G~n~~gqlG~g~~~~~~~p~~v~~~ 337 (393)
|+||.|.++|||.+.......|.+++.+.+ |++|+||.+|+++|+++|+||+||.|.+||||.++.+....|.++..
T Consensus 235 ~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~- 313 (389)
T 3kci_A 235 WSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQG- 313 (389)
T ss_dssp EEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGG-
T ss_pred EEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEecc-
Confidence 999999999999998888888998887764 99999999999999999999999999999999999998999999985
Q ss_pred CCCCCeEEEEeCCCceEEEE-CCcEEEEecCCCCCCcccCCCCCCCCCCCCCCCC
Q 016197 338 FSESPVDQVSCGWKHTAAIS-EGKILTWGWGGSHGTFSEDGHSSGGQLDRGQLTP 391 (393)
Q Consensus 338 ~~~~~i~~i~~G~~~t~~l~-~g~v~~wG~~~~~~~~~~~~~n~~gqlg~g~~~~ 391 (393)
+.+.+|++|+||.+|+++++ +|+||+||+ |.+||||+|...+
T Consensus 314 l~~~~v~~ia~G~~h~~al~~~G~v~~wG~------------n~~GqLG~g~~~~ 356 (389)
T 3kci_A 314 LQGKKVIAIATGSLHCVCCTEDGEVYTWGD------------NDEGQLGDGTTNA 356 (389)
T ss_dssp GTTCCEEEEEECSSEEEEEETTCCEEEEEC------------CTTSTTCSSSCCC
T ss_pred CCCCCEEEEEeccCeEEEECCCCCEEEeeC------------CCCCcCCCCCCCC
Confidence 57779999999999999999 999999999 7999999998754
No 3
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=1.1e-64 Score=488.15 Aligned_cols=341 Identities=28% Similarity=0.442 Sum_probs=289.0
Q ss_pred eeEeeeccccceEEEEEEcCCCCCcCCCCCCC-eeeeeeeccccCCceeEEEeCCCeeEEEecCCcEEEEecCCCeeccC
Q 016197 27 CKRWISSTLQRRFAALWGNGDYGRLGLGSLES-RWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGI 105 (393)
Q Consensus 27 ~~~~~~~~~~~~~v~~wG~n~~g~lG~~~~~~-~~~p~~~~~~~~~~I~~I~~G~~~~~~lt~~G~v~~wG~n~~g~lg~ 105 (393)
.|.+++ +.++.||+||.|.+||||.++... ...|..+..+ .+|++|+||..|+++|+++|+||+||.|.++|||.
T Consensus 18 ~h~~~l--~~~g~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~~--~~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~ 93 (413)
T 1a12_A 18 SHRSHS--TEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIP--EDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGR 93 (413)
T ss_dssp CCTTCC--CCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCS--SCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCS
T ss_pred ccceee--cCCCcEEEEECCCCCcCCCCCCccccccceEccCC--CCeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCC
Confidence 455544 489999999999999999998655 6788888754 67999999999999999999999999999999998
Q ss_pred CCCC-CceecceEeccCCCcEEEEEcCCceEEEEecCCcEEEEec--CCCCCCCCCCCCCcccccCeEeccCCCceEEEE
Q 016197 106 SENI-GYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGK--NSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQA 182 (393)
Q Consensus 106 ~~~~-~~~~~p~~i~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~--n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i 182 (393)
+... .....|.++. ++.+|++|+||..|+++|+++|+||+||. |.+||||.+.... ....|.++ +...+|++|
T Consensus 94 ~~~~~~~~~~P~~v~-l~~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~-~~~~P~~v--~~~~~i~~i 169 (413)
T 1a12_A 94 DTSVEGSEMVPGKVE-LQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMK-KSMVPVQV--QLDVPVVKV 169 (413)
T ss_dssp CCCSTTGGGSCEECC-CCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTB-CEEEEEEE--CCSSCEEEE
T ss_pred CCCCCccccCCeEec-CCCcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccc-cccCCEEe--cCCCCEEEE
Confidence 8653 3456788874 66799999999999999999999999999 9999999876543 23346666 445679999
Q ss_pred ecCCceEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccc--ccccccccceeeccc-----cCccEEEEEeCCceeEEEec
Q 016197 183 ALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF--LRSTSEYTPRLIKEL-----EGVKVKIAAAGFLHSACIDE 255 (393)
Q Consensus 183 ~~g~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~--~~~~~~~~p~~i~~~-----~~~~i~~i~~g~~~~~~lt~ 255 (393)
+||.+|+++|+++|+||+||.|.++|||.+........ ........|+.+... ...+|++|+||.+|++++++
T Consensus 170 a~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~ 249 (413)
T 1a12_A 170 ASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISH 249 (413)
T ss_dssp EECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEET
T ss_pred EecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCCEEEEEeC
Confidence 99999999999999999999999999998754211000 000123456555432 34689999999999999999
Q ss_pred CCcEEEEeCCCCCccccCCCCCcCCCccccCCCC----cceEEeeCceeEEEEcCCCEEEEeCCCCCCCCCC-CCCCccC
Q 016197 256 NGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPY----SEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIG-SIDVLHS 330 (393)
Q Consensus 256 ~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~----v~~v~~g~~~~~~lt~~g~v~~~G~n~~gqlG~g-~~~~~~~ 330 (393)
+|+||+||.|.++|||.+.......|.++..+.+ |++|+||.+|+++|+++|+||+||.|.+||||.+ +.+....
T Consensus 250 ~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~ 329 (413)
T 1a12_A 250 EGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSI 329 (413)
T ss_dssp TCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEE
T ss_pred CCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccC
Confidence 9999999999999999998888888998887765 9999999999999999999999999999999999 5677778
Q ss_pred ceeecCCCCCCCeEEEEeCCCceEEEE-CCcEEEEecCCCCCCcccCCCCCCCCCCCCCCC
Q 016197 331 PERVQGPFSESPVDQVSCGWKHTAAIS-EGKILTWGWGGSHGTFSEDGHSSGGQLDRGQLT 390 (393)
Q Consensus 331 p~~v~~~~~~~~i~~i~~G~~~t~~l~-~g~v~~wG~~~~~~~~~~~~~n~~gqlg~g~~~ 390 (393)
|+++... . +|++|+||.+|+++++ +|+||+||+ |.+||||+|...
T Consensus 330 P~~v~~l-~--~v~~v~~G~~hs~alt~~G~v~~wG~------------n~~gqLG~g~~~ 375 (413)
T 1a12_A 330 PTLISRL-P--AVSSVACGASVGYAVTKDGRVFAWGM------------GTNYQLGTGQDE 375 (413)
T ss_dssp EEECCSS-S--SEEEEEECSSEEEEEETTSCEEEEEC------------CTTSTTCSSSCS
T ss_pred CEEeccc-C--ceeEEEECcceEEEEeCCCCEEEecC------------CCCCCCCCCCCC
Confidence 9988753 2 8999999999999999 999999999 699999999864
No 4
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=8.5e-64 Score=483.74 Aligned_cols=347 Identities=26% Similarity=0.370 Sum_probs=292.3
Q ss_pred cccceeeeEeeeccccceEEEEEEcCCCCCcCCCCC-CCeeeeeeeccccCCceeEEEeCCCeeEEEecCCcEEEEecCC
Q 016197 21 GSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSL-ESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLND 99 (393)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~v~~wG~n~~g~lG~~~~-~~~~~p~~~~~~~~~~I~~I~~G~~~~~~lt~~G~v~~wG~n~ 99 (393)
..+++..+..++ ++++.||+||.|.+||||.+.. .....|.++..+++ |++|+||..|+++|+++|+||+||.|.
T Consensus 28 ~ia~g~~~~~~l--~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~--v~~va~G~~h~~~l~~~G~v~~wG~n~ 103 (423)
T 3mvd_K 28 RIAFHLELPKRR--TVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIPD--AVDISAGGMHNLVLTKSGDIYSFGCND 103 (423)
T ss_dssp -CCCCCCCCCCC--CCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCSS--EEEEEECSSEEEEEETTSCEEEEECCS
T ss_pred EEecCCccceee--cCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCCC--ceEEeeCCCeEEEEeCCCeEEEeECCC
Confidence 344555555555 4899999999999999999964 45678888887754 899999999999999999999999999
Q ss_pred CeeccCCCCCC-ceecceEeccCCCcEEEEEcCCceEEEEecCCcEEEEec--CCCCCCCCCCCCCcccccCeEeccCCC
Q 016197 100 FGQLGISENIG-YSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGK--NSNGQLGLGKKAAKVIPIPTKVECLSG 176 (393)
Q Consensus 100 ~g~lg~~~~~~-~~~~p~~i~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~--n~~gqlg~~~~~~~~~~~~~~~~~~~~ 176 (393)
++|||.+.... ....|.++. ++.+|++|+||..|+++|+++|+||+||. |.+||||.+.... .+.| +..+..
T Consensus 104 ~GqLG~~~~~~~~~~~P~~v~-~~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~--~~~p--~~~~~~ 178 (423)
T 3mvd_K 104 EGALGRDTSEDGSESKPDLID-LPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGN--KRTP--IDLMEG 178 (423)
T ss_dssp SSTTCSCCCSTTSSSSCEECC-CSSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBC--EEEE--EESSTT
T ss_pred CcCCCCCCcCCccccCCeEEc-CCCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCC--Ccee--eEecCC
Confidence 99999986543 356788887 56699999999999999999999999999 9999999876654 2333 334566
Q ss_pred ceEEEEecCCceEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccc--ccccccccceeeccccCccEEEEEeCCceeEEE-
Q 016197 177 IFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF--LRSTSEYTPRLIKELEGVKVKIAAAGFLHSACI- 253 (393)
Q Consensus 177 ~~i~~i~~g~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~--~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~l- 253 (393)
.+|++|+||.+|+++|+++|+||+||.|.++|||.+........ ........|.++.......|++|+||.+|++++
T Consensus 179 ~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~ 258 (423)
T 3mvd_K 179 TVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRE 258 (423)
T ss_dssp CCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETTEEEEEE
T ss_pred CcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEEECCcEEEEEE
Confidence 78999999999999999999999999999999999876433211 112345678888877777899999999999999
Q ss_pred ecCCcEEEEeCCCCCccccCCCC--CcCCCccccCCCCcceEEeeCceeEEEEcCCCEEEEeCCCCCCCCCCCCCC-ccC
Q 016197 254 DENGRVYIFGDRAVDKMLFQEGN--HARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDV-LHS 330 (393)
Q Consensus 254 t~~G~vy~wG~n~~gqlg~~~~~--~~~~p~~i~~~~~v~~v~~g~~~~~~lt~~g~v~~~G~n~~gqlG~g~~~~-~~~ 330 (393)
+++|+||+||.|.++|||.+... ....|.++. +.+|++|+||.+|+++|+++|+||+||.|.+||||.++... ...
T Consensus 259 ~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~-~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~ 337 (423)
T 3mvd_K 259 SQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE-LKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEK 337 (423)
T ss_dssp TTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC-CCSEEEEEECSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEE
T ss_pred CCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC-CCCeEEEEcccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccC
Confidence 69999999999999999995433 334566655 67899999999999999999999999999999999998765 467
Q ss_pred ceeecCCCCCCCeEEEEeCCCceEEEE-CCcEEEEecCCCCCCcccCCCCCCCCCCCCCCCC
Q 016197 331 PERVQGPFSESPVDQVSCGWKHTAAIS-EGKILTWGWGGSHGTFSEDGHSSGGQLDRGQLTP 391 (393)
Q Consensus 331 p~~v~~~~~~~~i~~i~~G~~~t~~l~-~g~v~~wG~~~~~~~~~~~~~n~~gqlg~g~~~~ 391 (393)
|.++.. +.. +|++|+||.+|+++++ +|+||+||+ |.+||||+|...+
T Consensus 338 p~~v~~-l~~-~v~~ia~G~~hs~alt~~G~v~~wG~------------n~~GqLG~g~~~~ 385 (423)
T 3mvd_K 338 PTIVKK-LTE-KIVSVGCGEVCSYAVTIDGKLYSWGS------------GVNNQLGVGDGDD 385 (423)
T ss_dssp EEECTT-CCS-CEEEEEEETTEEEEEETTSCEEEEEC------------CTTSCSSSSSSCC
T ss_pred ceEecc-CCC-CEEEEEcCCCeEEEEcCCCCEEEECC------------CCCCCCCCCCCCC
Confidence 888874 444 9999999999999999 999999999 7999999998754
No 5
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-63 Score=486.09 Aligned_cols=331 Identities=25% Similarity=0.414 Sum_probs=281.2
Q ss_pred ccceEEEEEEcCCCCCcCCCCC---CCeeeeeeeccc--cCCceeEEEeCCCeeEEEecCCcEEEEecCCCeeccCCCCC
Q 016197 35 LQRRFAALWGNGDYGRLGLGSL---ESRWRPVVCSAF--EKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENI 109 (393)
Q Consensus 35 ~~~~~v~~wG~n~~g~lG~~~~---~~~~~p~~~~~~--~~~~I~~I~~G~~~~~~lt~~G~v~~wG~n~~g~lg~~~~~ 109 (393)
++++.||+||.|.+||||.++. .+...|..++.+ ...+|++|+||..|+++|+++|+||+||.|+++|||.+...
T Consensus 26 ~~~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~v~~wG~n~~GqLG~~~~~ 105 (473)
T 3of7_A 26 VQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSN 105 (473)
T ss_dssp SSCCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSCCC-
T ss_pred CCCccEEEEcCCCCCccCCCCCcccccccCcccccccccCCCCEEEEEeCCCeEEEEecCCeEEEeECCCCCCCCCCCcc
Confidence 3689999999999999999984 456788888776 56789999999999999999999999999999999987544
Q ss_pred Cc----------------------eecceEecc--CC-----CcEEEEEcCCceEEEEecCCcEEEEec--CCCCCCCCC
Q 016197 110 GY----------------------SLEPLRISG--LK-----KEVVQISTGYHHSSAITVDGELYMWGK--NSNGQLGLG 158 (393)
Q Consensus 110 ~~----------------------~~~p~~i~~--~~-----~~i~~i~~g~~~~~~lt~~G~vy~~G~--n~~gqlg~~ 158 (393)
.. ...|.+++. ++ .+|++|+||..|+++|+++|+||+||. +..||||..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~ 185 (473)
T 3of7_A 106 AKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFY 185 (473)
T ss_dssp --------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESB
T ss_pred cccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCCC
Confidence 31 456788775 53 599999999999999999999999998 678999986
Q ss_pred CCCCcccccCeEeccCCCceEEEEecCCceEEEEeCCCcEEEEeCCCCCCCCCCCCCCccccccccccccceeeccccCc
Q 016197 159 KKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGV 238 (393)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~ 238 (393)
.........|.++..+.+.+|++|+||..|+++|+++|+||+||.|.++|||.+...... .....|..+.. .
T Consensus 186 ~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~-----~~~~~p~~~~~---~ 257 (473)
T 3of7_A 186 QDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFR-----LKTLDPRPFGL---R 257 (473)
T ss_dssp TTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGT-----TTTCSCEECSC---C
T ss_pred CCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCCcccccc-----ccccCceecCC---c
Confidence 665556778899988888889999999999999999999999999999999998653211 22345555532 4
Q ss_pred cEEEEEeCCceeEEEecCCcEEEEeCCCCCccccCCCC----CcCCCccccCCC--CcceEEeeCceeEEEEcCCCEEEE
Q 016197 239 KVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGN----HARRPSLISKLP--YSEEVVCGGYHTCVLTSGGELYTW 312 (393)
Q Consensus 239 ~i~~i~~g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~----~~~~p~~i~~~~--~v~~v~~g~~~~~~lt~~g~v~~~ 312 (393)
+|++|+||.+|+++|+++|+||+||.|.++|||.+... ....|+++..+. +|++|+||.+|+++|+++|+||+|
T Consensus 258 ~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~ia~G~~hs~~lt~~G~v~~w 337 (473)
T 3of7_A 258 HVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSC 337 (473)
T ss_dssp SEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEEEEECSSEEEEEETTSCEEEE
T ss_pred ceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccccccccCCccEEEEEeCCCeEEEEeCCCeEEEE
Confidence 79999999999999999999999999999999988754 235688887665 599999999999999999999999
Q ss_pred eCCCCCCCCCCCC--------------CCccCceeecCCCCCCCeEEEEeCCCceEEEE-CCcEEEEecCCCCCCcccCC
Q 016197 313 GSNENGCLGIGSI--------------DVLHSPERVQGPFSESPVDQVSCGWKHTAAIS-EGKILTWGWGGSHGTFSEDG 377 (393)
Q Consensus 313 G~n~~gqlG~g~~--------------~~~~~p~~v~~~~~~~~i~~i~~G~~~t~~l~-~g~v~~wG~~~~~~~~~~~~ 377 (393)
|.|.+||||.+.. .....|.++.. ..+|++|+||.+|+++++ +|+||+||+
T Consensus 338 G~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~---~~~v~~Ia~G~~hs~al~~~G~vy~wG~----------- 403 (473)
T 3of7_A 338 GRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNN---VPKFKSVAAGSHHSVAVAQNGIAYSWGF----------- 403 (473)
T ss_dssp EECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCS---SCCEEEEEECSSEEEEEETTSCEEEEEC-----------
T ss_pred ECCCCCccCCCccccccccccccCCceeeeccCcccCC---CCceEEEEeCCCeEEEEeCCCcEEEeeC-----------
Confidence 9999999998742 12234555543 128999999999999999 999999999
Q ss_pred CCCCCCCCCCC
Q 016197 378 HSSGGQLDRGQ 388 (393)
Q Consensus 378 ~n~~gqlg~g~ 388 (393)
|.+||||+|.
T Consensus 404 -n~~GqLG~g~ 413 (473)
T 3of7_A 404 -GETYAVGLGP 413 (473)
T ss_dssp -CTTCTTCCCS
T ss_pred -CCCCCCCCCC
Confidence 7999999998
No 6
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.9e-61 Score=461.73 Aligned_cols=321 Identities=31% Similarity=0.507 Sum_probs=290.1
Q ss_pred ccceeeeEeeeccccceEEEEEEcCCCCCcCCCCCCCeeeeeeeccccCCce--eEEEeCCCeeEEEecCCcEEEEecCC
Q 016197 22 SKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSL--KALACGGAHTLFLTETGCVYATGLND 99 (393)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~I--~~I~~G~~~~~~lt~~G~v~~wG~n~ 99 (393)
.+++..+.++++ .++.||+||.|.+||||.+..++...|.++..+....+ ++|+||..|+++|+++|+||+||.|.
T Consensus 58 i~~G~~~~~~l~--~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~ 135 (389)
T 3kci_A 58 LIGGEQTLFAVT--ADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAE 135 (389)
T ss_dssp EEEETTEEEEEE--TTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCG
T ss_pred EEeCCCeEEEEc--CCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCC
Confidence 445556666665 78999999999999999999999999999998877644 78889999999999999999999999
Q ss_pred CeeccCCCCCCceecceEeccCCC-cEEEEEcCCceEEEEecCCcEEEEecCCCCCCCCCCCCCcccccCeEeccCCCce
Q 016197 100 FGQLGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIF 178 (393)
Q Consensus 100 ~g~lg~~~~~~~~~~p~~i~~~~~-~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~ 178 (393)
++|||.+.. .....|.+++.++. +|++|+||..|+++|+++|+||+||.|.+||||.+.... ...|.++..+.+.+
T Consensus 136 ~GqLG~g~~-~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~--~~~p~~v~~~~~~~ 212 (389)
T 3kci_A 136 DGKLGHGNR-SPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSED--QLKPKLVEALQGHR 212 (389)
T ss_dssp GGTTCSSSC-CCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCC--EEEEEECGGGTTSC
T ss_pred CCcCCCCCC-ccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcc--cccceEecccCCCe
Confidence 999999854 44578888887765 899999999999999999999999999999999988765 56788888888889
Q ss_pred EEEEecCC--ceEEEEeCCCcEEEEeCCCCCCCCCCCCCCccccccccccccceeeccccCccEEEEEeCCceeEEEecC
Q 016197 179 TKQAALGF--EQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDEN 256 (393)
Q Consensus 179 i~~i~~g~--~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~ 256 (393)
|++|+||. .|+++|+++|+||+||.|.++|||.+.. .....|.++..+.+.+|++|+||.+|+++|+++
T Consensus 213 v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~---------~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~ 283 (389)
T 3kci_A 213 VVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGS---------DGCKVPMKIDSLTGLGVVKVECGSQFSVALTKS 283 (389)
T ss_dssp EEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSC---------CCEEEEEECGGGTTSCEEEEEEETTEEEEEETT
T ss_pred EEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCC---------CCccccEEecccCCCcEEEEeCCCCEEEEEeCC
Confidence 99999994 8999999999999999999999999875 345678888888888899999999999999999
Q ss_pred CcEEEEeCCCCCccccCCCCCcCCCccccCCC--CcceEEeeCceeEEEEcCCCEEEEeCCCCCCCCCCCCCCccCceee
Q 016197 257 GRVYIFGDRAVDKMLFQEGNHARRPSLISKLP--YSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERV 334 (393)
Q Consensus 257 G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~--~v~~v~~g~~~~~~lt~~g~v~~~G~n~~gqlG~g~~~~~~~p~~v 334 (393)
|+||+||.|.++|||.+.......|.++..+. +|++|+||.+|+++++++|+||+||.|.+||||.++.+....|+++
T Consensus 284 G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v 363 (389)
T 3kci_A 284 GAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLV 363 (389)
T ss_dssp SCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEEC
T ss_pred CeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCcCCCCCCCCccCcEEe
Confidence 99999999999999999988888899988775 4999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCeEEEEeCCCceEEEE
Q 016197 335 QGPFSESPVDQVSCGWKHTAAIS 357 (393)
Q Consensus 335 ~~~~~~~~i~~i~~G~~~t~~l~ 357 (393)
.. +.+.+|++|+||.+|+++++
T Consensus 364 ~~-~~~~~v~~va~G~~ht~al~ 385 (389)
T 3kci_A 364 AA-LQGKKVNRVACGSAHTLAWS 385 (389)
T ss_dssp GG-GTTSCCCEEEEETTEEEEEC
T ss_pred cc-cCCCCEEEEEecCCcEEEEe
Confidence 84 67779999999999999998
No 7
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=4.2e-60 Score=456.23 Aligned_cols=328 Identities=25% Similarity=0.392 Sum_probs=282.3
Q ss_pred ccccceeeeEeeeccccceEEEEEEcCCCCCcCCCCCC--CeeeeeeeccccCCceeEEEeCCCeeEEEecCCcEEEEec
Q 016197 20 LGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLE--SRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGL 97 (393)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~v~~wG~n~~g~lG~~~~~--~~~~p~~~~~~~~~~I~~I~~G~~~~~~lt~~G~v~~wG~ 97 (393)
...+++..|.++++ +++.||+||.|.+||||.+... ....|.++.. . .+|++|+||..|+++|+++|+||+||.
T Consensus 62 ~~va~G~~hs~~l~--~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~l-~-~~i~~va~G~~hs~alt~~G~v~~wG~ 137 (413)
T 1a12_A 62 VQAEAGGMHTVCLS--KSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVEL-Q-EKVVQVSAGDSHTAALTDDGRVFLWGS 137 (413)
T ss_dssp EEEEECSSEEEEEE--TTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCC-C-SCEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred EEEEeCCCeEEEEc--CCCCEEEEECCCCCCCCCCCCCCccccCCeEecC-C-CcEEEEecCCCeEEEEcCCCcEEEeeC
Confidence 44555667777776 7899999999999999998753 4567887753 3 379999999999999999999999999
Q ss_pred --CCCeeccCCCCCCceecceEeccCCCcEEEEEcCCceEEEEecCCcEEEEecCCCCCCCCCCCCCc---------ccc
Q 016197 98 --NDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAK---------VIP 166 (393)
Q Consensus 98 --n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~---------~~~ 166 (393)
|.++|||..........|.++. ...+|++|+||..|+++|+++|+||+||.|.+||||.+..... ...
T Consensus 138 ~~n~~GqlG~~~~~~~~~~P~~v~-~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~ 216 (413)
T 1a12_A 138 FRDNNGVIGLLEPMKKSMVPVQVQ-LDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLL 216 (413)
T ss_dssp EEETTEEEESSBBTBCEEEEEEEC-CSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHH
T ss_pred CcCCCCccCcCCccccccCCEEec-CCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccc
Confidence 9999999987666666788874 4559999999999999999999999999999999998754221 124
Q ss_pred cCeEeccC-----CCceEEEEecCCceEEEEeCCCcEEEEeCCCCCCCCCCCCCCccccccccccccceeeccccC--cc
Q 016197 167 IPTKVECL-----SGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEG--VK 239 (393)
Q Consensus 167 ~~~~~~~~-----~~~~i~~i~~g~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~--~~ 239 (393)
.|+.+... ...+|++|+||.+|+++|+++|+||+||.|.++|||.+.. .....|.++..+.+ .+
T Consensus 217 ~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~---------~~~~~P~~v~~l~~~~~~ 287 (413)
T 1a12_A 217 VPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGT---------ESCFIPQNLTSFKNSTKS 287 (413)
T ss_dssp SCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSC---------SCEEEEEECGGGCCTTCC
T ss_pred cCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCC---------CcccccEEchhccCCCce
Confidence 55555442 3467999999999999999999999999999999999876 34467888887765 57
Q ss_pred EEEEEeCCceeEEEecCCcEEEEeCCCCCccccC-CCCCcCCCccccCCCCcceEEeeCceeEEEEcCCCEEEEeCCCCC
Q 016197 240 VKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQ-EGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNENG 318 (393)
Q Consensus 240 i~~i~~g~~~~~~lt~~G~vy~wG~n~~gqlg~~-~~~~~~~p~~i~~~~~v~~v~~g~~~~~~lt~~g~v~~~G~n~~g 318 (393)
|++|+||.+|+++|+++|+||+||.|.++|||.+ .......|++++.+.+|++|+||.+|+++++++|+||+||.|.+|
T Consensus 288 v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~~v~~v~~G~~hs~alt~~G~v~~wG~n~~g 367 (413)
T 1a12_A 288 WVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNY 367 (413)
T ss_dssp EEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSSSEEEEEECSSEEEEEETTSCEEEEECCTTS
T ss_pred EEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecccCceeEEEECcceEEEEeCCCCEEEecCCCCC
Confidence 9999999999999999999999999999999998 456677899999888999999999999999999999999999999
Q ss_pred CCCCCCCCCccCceeecCC-CCCCCeEEEEeCCCceEEEE-CCcE
Q 016197 319 CLGIGSIDVLHSPERVQGP-FSESPVDQVSCGWKHTAAIS-EGKI 361 (393)
Q Consensus 319 qlG~g~~~~~~~p~~v~~~-~~~~~i~~i~~G~~~t~~l~-~g~v 361 (393)
|||.++.++...|.++..+ +...+|++|+||.+|+++++ ++++
T Consensus 368 qLG~g~~~~~~~P~~v~~~~~~~~~v~~v~~G~~ht~~l~~~g~~ 412 (413)
T 1a12_A 368 QLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDKEQ 412 (413)
T ss_dssp TTCSSSCSCEEEEEECCSTTTTTEEEEEEEECSSEEEEEEEECSC
T ss_pred CCCCCCCCCcccCeEccccccCCCeEEEEeeCCCcEEEEEecCCC
Confidence 9999999888999999853 46678999999999999999 8764
No 8
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=1.5e-59 Score=450.95 Aligned_cols=298 Identities=31% Similarity=0.559 Sum_probs=271.0
Q ss_pred cCCceeEEEeCCCeeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCC-cEEEEEcCCceEEEEecCC-cEEE
Q 016197 69 EKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDG-ELYM 146 (393)
Q Consensus 69 ~~~~I~~I~~G~~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~-~i~~i~~g~~~~~~lt~~G-~vy~ 146 (393)
+..+|++|+||..|+++|+++|+||+||.|.++|||.+... ....|.++..++. +|++|+||..|+++|+++| +||+
T Consensus 14 ~~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~-~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~ 92 (406)
T 4d9s_A 14 PPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAE-DRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYS 92 (406)
T ss_dssp -CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCC-CEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEE
T ss_pred CccceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcc-cCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEE
Confidence 34679999999999999999999999999999999998654 4478888886664 8999999999999999986 9999
Q ss_pred EecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecCCceEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccccccccc
Q 016197 147 WGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSE 226 (393)
Q Consensus 147 ~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~ 226 (393)
||.|.+||||.+.... ...|.++..+.+.+|++|+||..|+++|+++|+||+||.|.++|||.+.. ...
T Consensus 93 wG~n~~GqLG~g~~~~--~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~---------~~~ 161 (406)
T 4d9s_A 93 WGWGDFGRLGHGNSSD--LFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDT---------EDS 161 (406)
T ss_dssp EECCGGGTTCSSSCCC--EEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSC---------CCE
T ss_pred EcCCCCcCCCCCCCCc--cccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCC---------CCc
Confidence 9999999999988755 56777888888888999999999999999999999999999999999876 445
Q ss_pred ccceeeccccCccEEEEEeCCceeEEEecCCcEEEEeCCCCCccccCCCCCcCCCccccCCC--CcceEEeeCceeEEEE
Q 016197 227 YTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLP--YSEEVVCGGYHTCVLT 304 (393)
Q Consensus 227 ~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~--~v~~v~~g~~~~~~lt 304 (393)
..|+++..+.+.+|++|+||.+|+++|+++|+||+||.|.++|||.++......|.++..+. +|++|+||.+|+++|+
T Consensus 162 ~~p~~v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~ 241 (406)
T 4d9s_A 162 LVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVS 241 (406)
T ss_dssp EEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEE
T ss_pred ccceEecccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEc
Confidence 67888888888899999999999999999999999999999999999888888888887764 5999999999999999
Q ss_pred cCCCEEEEeCCCCCCCCCCCCCCccCceeecCCCCCCCeEEEEeCCCceEEEE-CCcEEEEecCCCCCCcccCCCCCCCC
Q 016197 305 SGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAIS-EGKILTWGWGGSHGTFSEDGHSSGGQ 383 (393)
Q Consensus 305 ~~g~v~~~G~n~~gqlG~g~~~~~~~p~~v~~~~~~~~i~~i~~G~~~t~~l~-~g~v~~wG~~~~~~~~~~~~~n~~gq 383 (393)
++|+||+||.|.+||||.++......|.++.. +...+|++|+||.+|+++|+ +|+||+||+ |.+||
T Consensus 242 ~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~-~~~~~v~~i~~G~~hs~alt~~G~v~~wG~------------n~~Gq 308 (406)
T 4d9s_A 242 YSGALYTYGWSKYGQLGHGDLEDHLIPHKLEA-LSNSFISQISGGWRHTMALTSDGKLYGWGW------------NKFGQ 308 (406)
T ss_dssp TTCCEEEEECCTTSTTCSSSCCCEEEEEECGG-GTTSCEEEEEECSSEEEEEETTSCEEEEEC------------CTTST
T ss_pred CCCCEEEeeCCCCCCCCCCCCcCccccEEecc-cCCCCEEEEEecCCEEEEEcCCCeEEEeeC------------CCCCC
Confidence 99999999999999999999998889999985 67778999999999999999 999999999 79999
Q ss_pred CCCCCCCC
Q 016197 384 LDRGQLTP 391 (393)
Q Consensus 384 lg~g~~~~ 391 (393)
||+|...+
T Consensus 309 LG~g~~~~ 316 (406)
T 4d9s_A 309 VGVGNNLD 316 (406)
T ss_dssp TCSSSSSC
T ss_pred CCCCCCCC
Confidence 99997653
No 9
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-57 Score=446.22 Aligned_cols=329 Identities=23% Similarity=0.364 Sum_probs=277.8
Q ss_pred hccccceeeeEeeeccccceEEEEEEcCCCCCcCCCCCCC-----------------------eeeeeeecc--c----c
Q 016197 19 KLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLES-----------------------RWRPVVCSA--F----E 69 (393)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~v~~wG~n~~g~lG~~~~~~-----------------------~~~p~~~~~--~----~ 69 (393)
....+++..|+++++ .++.||+||.|.+||||.+.... ...|.++.. + +
T Consensus 69 i~~va~G~~Ht~alt--~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~ 146 (473)
T 3of7_A 69 IISFAVGGMHTLALD--EESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAE 146 (473)
T ss_dssp EEEEEECSSEEEEEE--TTCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHT
T ss_pred EEEEEeCCCeEEEEe--cCCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccC
Confidence 345566667887776 78999999999999999987654 457888775 4 3
Q ss_pred CCceeEEEeCCCeeEEEecCCcEEEEec--CCCeeccCCC-CCCceecceEeccCCC-cEEEEEcCCceEEEEecCCcEE
Q 016197 70 KHSLKALACGGAHTLFLTETGCVYATGL--NDFGQLGISE-NIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELY 145 (393)
Q Consensus 70 ~~~I~~I~~G~~~~~~lt~~G~v~~wG~--n~~g~lg~~~-~~~~~~~p~~i~~~~~-~i~~i~~g~~~~~~lt~~G~vy 145 (393)
+.+|++|+||..|+++|+++|+||+||. +..+|||... .......|.+++.+.. +|++|+||..|+++|+++|+||
T Consensus 147 ~~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~ 226 (473)
T 3of7_A 147 GHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVF 226 (473)
T ss_dssp TCCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEE
T ss_pred CCcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEE
Confidence 6889999999999999999999999998 6789999854 3345678888887764 7999999999999999999999
Q ss_pred EEecCCCCCCCCCCCCCc--ccccCeEeccCCCceEEEEecCCceEEEEeCCCcEEEEeCCCCCCCCCCCCCCccccccc
Q 016197 146 MWGKNSNGQLGLGKKAAK--VIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRS 223 (393)
Q Consensus 146 ~~G~n~~gqlg~~~~~~~--~~~~~~~~~~~~~~~i~~i~~g~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~ 223 (393)
+||.|.+||||.+..... ....|..+.. .+|++|+||.+|+++|+++|+||+||.|.++|||.+..... .
T Consensus 227 ~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~---~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~-----~ 298 (473)
T 3of7_A 227 AWGNGQQNQLGRKVMERFRLKTLDPRPFGL---RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVED-----G 298 (473)
T ss_dssp EEECCTTSTTSSCCCGGGTTTTCSCEECSC---CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCT-----T
T ss_pred EEeCCCCCCCCCCccccccccccCceecCC---cceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccC-----C
Confidence 999999999998765431 2334555432 46999999999999999999999999999999998875311 1
Q ss_pred cccccceeeccccCccEEEEEeCCceeEEEecCCcEEEEeCCCCCccccCCC--------------CCcCCCccccCCCC
Q 016197 224 TSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEG--------------NHARRPSLISKLPY 289 (393)
Q Consensus 224 ~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~--------------~~~~~p~~i~~~~~ 289 (393)
.....|.++..+...+|++|+||.+|+++|+++|+||+||.|.++|||.+.. .....|.+++.+.+
T Consensus 299 ~~~~~P~~v~~~~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~ 378 (473)
T 3of7_A 299 ALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPK 378 (473)
T ss_dssp CEEEEEEECCCCTTCCEEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSCC
T ss_pred ceeeccccccccCCccEEEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCCc
Confidence 2345688888777789999999999999999999999999999999998642 12346788887778
Q ss_pred cceEEeeCceeEEEEcCCCEEEEeCCCCCCCCCCC-CCCccCceeecC-CCCCCCeEEEEeCCCceEEEE
Q 016197 290 SEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGS-IDVLHSPERVQG-PFSESPVDQVSCGWKHTAAIS 357 (393)
Q Consensus 290 v~~v~~g~~~~~~lt~~g~v~~~G~n~~gqlG~g~-~~~~~~p~~v~~-~~~~~~i~~i~~G~~~t~~l~ 357 (393)
|++|+||.+|++||+++|+||+||.|.+||||.++ .+....|++|.. .+...+|++|+||..||+++.
T Consensus 379 v~~Ia~G~~hs~al~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~~~~~v~~v~cG~~~s~~~~ 448 (473)
T 3of7_A 379 FKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQFSVSGG 448 (473)
T ss_dssp EEEEEECSSEEEEEETTSCEEEEECCTTCTTCCCSCCSCEEEEEECCCTTTTTEEEEEEEECSSEEEEEE
T ss_pred eEEEEeCCCeEEEEeCCCcEEEeeCCCCCCCCCCCCCccccCCeEecccccCCCeEEEEeeCCCeEEEEE
Confidence 99999999999999999999999999999999998 788889999985 245668999999999999986
No 10
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=4.5e-57 Score=436.67 Aligned_cols=325 Identities=20% Similarity=0.265 Sum_probs=276.1
Q ss_pred ccccceeeeEeeeccccceEEEEEEcCCCCCcCCCCCCC--eeeeeeeccccCCceeEEEeCCCeeEEEecCCcEEEEec
Q 016197 20 LGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLES--RWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGL 97 (393)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~v~~wG~n~~g~lG~~~~~~--~~~p~~~~~~~~~~I~~I~~G~~~~~~lt~~G~v~~wG~ 97 (393)
...+++..|.++++ +++.||+||.|.+||||.+...+ ...|.++... .+|++|+||..|+++|+++|+||+||.
T Consensus 78 ~~va~G~~h~~~l~--~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~--~~i~~va~G~~hs~al~~~G~v~~wG~ 153 (423)
T 3mvd_K 78 VDISAGGMHNLVLT--KSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLP--GKALCISAGDSHSACLLEDGRVFAWGS 153 (423)
T ss_dssp EEEEECSSEEEEEE--TTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCS--SCEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred eEEeeCCCeEEEEe--CCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCC--CCEEEEEcCcCeEEEEeCCCeEEEEeC
Confidence 45556667777776 79999999999999999997654 5677777643 469999999999999999999999998
Q ss_pred --CCCeeccCCCCCCceecceEeccCCCcEEEEEcCCceEEEEecCCcEEEEecCCCCCCCCCCCCC---------cccc
Q 016197 98 --NDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAA---------KVIP 166 (393)
Q Consensus 98 --n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~---------~~~~ 166 (393)
|.++|||...... .+.|+++. ...+|++|+||..|+++|+++|+||+||.|.+||||.+.... ....
T Consensus 154 ~~n~~GqlG~~~~~~-~~~p~~~~-~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~ 231 (423)
T 3mvd_K 154 FRDSHGNMGLTIDGN-KRTPIDLM-EGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLL 231 (423)
T ss_dssp EECSSSEEESBTTBC-EEEEEESS-TTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTS
T ss_pred CCCCCCCcCcCCCCC-CceeeEec-CCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCccccccccccccccccc
Confidence 9999999885433 45666654 234899999999999999999999999999999999876532 2345
Q ss_pred cCeEeccCCCceEEEEecCCceEEEE-eCCCcEEEEeCCCCCCCCCCCCCCccccccccccccceeeccccCccEEEEEe
Q 016197 167 IPTKVECLSGIFTKQAALGFEQSVAV-TGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAA 245 (393)
Q Consensus 167 ~~~~~~~~~~~~i~~i~~g~~~s~~l-t~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~ 245 (393)
.|..+......+|++|+||.+|++++ +++|+||+||.|.++|||.+.... .....|.++. ..+|++|+|
T Consensus 232 ~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~-------~~~~~p~~~~---~~~v~~ia~ 301 (423)
T 3mvd_K 232 RPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGK-------EFALTPIKTE---LKDIRHIAG 301 (423)
T ss_dssp SCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTC-------SEEEEEEEEC---CCSEEEEEE
T ss_pred CCeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCC-------ceeeeeEEcC---CCCeEEEEc
Confidence 78888877778899999999999999 699999999999999999965421 2233454443 347999999
Q ss_pred CCceeEEEecCCcEEEEeCCCCCccccCCCCC-cCCCccccCCC-CcceEEeeCceeEEEEcCCCEEEEeCCCCCCCCCC
Q 016197 246 GFLHSACIDENGRVYIFGDRAVDKMLFQEGNH-ARRPSLISKLP-YSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIG 323 (393)
Q Consensus 246 g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~-~~~p~~i~~~~-~v~~v~~g~~~~~~lt~~g~v~~~G~n~~gqlG~g 323 (393)
|.+|+++|+++|+||+||.|.++|||.+.... ...|.+++.+. +|++|+||.+|+++|+++|+||+||.|.+||||.+
T Consensus 302 G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~g 381 (423)
T 3mvd_K 302 GQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVG 381 (423)
T ss_dssp CSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETTEEEEEETTSCEEEEECCTTSCSSSS
T ss_pred ccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCCeEEEEcCCCCEEEECCCCCCCCCCC
Confidence 99999999999999999999999999988655 45788888777 59999999999999999999999999999999999
Q ss_pred CCCCccCceeecCC-CCCCCeEEEEeCCCceEEEE-CCc
Q 016197 324 SIDVLHSPERVQGP-FSESPVDQVSCGWKHTAAIS-EGK 360 (393)
Q Consensus 324 ~~~~~~~p~~v~~~-~~~~~i~~i~~G~~~t~~l~-~g~ 360 (393)
+..+...|++|..+ +.+.+|++|+||.+|+++|+ +++
T Consensus 382 ~~~~~~~P~~v~~~~~~~~~v~~va~G~~ht~~l~~~~k 420 (423)
T 3mvd_K 382 DGDDELEPIVVVSKNTQGKHMLLASGGGQHAIFLVKADK 420 (423)
T ss_dssp SSCCEEEEEECCSTTTTTCCEEEEEECSSEEEEEEECC-
T ss_pred CCCCcccCeEEeCcccCCCEEEEEEECCCcEEEEEcccc
Confidence 99999999999853 56778999999999999999 764
No 11
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=2.8e-49 Score=360.06 Aligned_cols=250 Identities=27% Similarity=0.393 Sum_probs=208.2
Q ss_pred EEEEEEcCCCCCcCCCCCCCeeeeeeeccccCCceeEEEeCCCeeEEEecCCcEEEEecCCCeeccCCCCCCceecceEe
Q 016197 39 FAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRI 118 (393)
Q Consensus 39 ~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~I~~I~~G~~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i 118 (393)
.||+||.|...++.. .++.. ..+|++|++|..|+++|+ +|+||+||.|.++|||... .
T Consensus 3 ~v~~WG~n~~~~~~~---------~p~~~--~~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~---------~- 60 (282)
T 3qhy_B 3 SVVAWGGNNDWGEAT---------VPAEA--QSGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPA---------A- 60 (282)
T ss_dssp EEEEECSCCTTSTTC---------CCGGG--SSSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCG---------G-
T ss_pred EEEEeCCCCCcCccc---------CCccc--cCCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCc---------c-
Confidence 599999987555431 12222 236999999999999998 9999999999999998521 1
Q ss_pred ccCCCcEEEEEcCCceEEEEecCCcEEEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecCCceEEEEeCCCcE
Q 016197 119 SGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKV 198 (393)
Q Consensus 119 ~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~s~~lt~~G~v 198 (393)
...+|++|+||..|+++|+ +|+||+||.|.+||||.. .++ ..+|++|+||.+|+++|+ +|+|
T Consensus 61 --~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~P----------~~~----~~~v~~ia~G~~hs~al~-~G~v 122 (282)
T 3qhy_B 61 --TQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTVP----------AEA----RSGVDAIAAGAWASYALK-DGKV 122 (282)
T ss_dssp --GGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCCC----------GGG----SSSEEEEEEETTEEEEEE-TTEE
T ss_pred --CCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCCC----------ccc----CCCeEEEECcCCEEEEEe-CCeE
Confidence 2348999999999999996 999999999999999852 222 136999999999999999 9999
Q ss_pred EEEeCCCCCCCCCCCCCCccccccccccccceeeccccCccEEEEEeCCceeEEEecCCcEEEEeCCCCCccccCCCCCc
Q 016197 199 LSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHA 278 (393)
Q Consensus 199 ~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~ 278 (393)
|+||.|.++||+.... ...+|++|+||.+|+++++ +|+||+||.|.++|++.
T Consensus 123 ~~wG~n~~gqlg~~~~---------------------~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~------ 174 (282)
T 3qhy_B 123 IAWGDDSDGQTTVPAE---------------------AQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTV------ 174 (282)
T ss_dssp EEEECCTTSTTSCCGG---------------------GGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSC------
T ss_pred EEecCCCCCcCCCCcc---------------------CCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCC------
Confidence 9999999999973221 1136999999999999999 89999999999999973
Q ss_pred CCCccccCCCCcceEEeeCceeEEEEcCCCEEEEeCCCCCCCCCCCCCCccCceeecCCCCCCCeEEEEeCCCceEEEEC
Q 016197 279 RRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAISE 358 (393)
Q Consensus 279 ~~p~~i~~~~~v~~v~~g~~~~~~lt~~g~v~~~G~n~~gqlG~g~~~~~~~p~~v~~~~~~~~i~~i~~G~~~t~~l~~ 358 (393)
|.++ ..+|++|+||.+|+++| ++|+||+||.|.+||||.+ .+.. .+|++|+||.+|++++++
T Consensus 175 --p~~~--~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~p--------~~~~-----~~v~~i~~G~~h~~al~~ 236 (282)
T 3qhy_B 175 --PAEA--QSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVP--------TEAL-----SGVSAIASGEWYSLALKN 236 (282)
T ss_dssp --CGGG--GSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCCC--------GGGG-----SSCCEEEECSSCEEEEET
T ss_pred --ceec--CCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCCC--------cccC-----CCceEEEcCCCEEEEEEC
Confidence 3333 35799999999999999 8999999999999999853 2222 379999999999999999
Q ss_pred CcEEEEecCCCCCCcccCCCCCCCCCCC
Q 016197 359 GKILTWGWGGSHGTFSEDGHSSGGQLDR 386 (393)
Q Consensus 359 g~v~~wG~~~~~~~~~~~~~n~~gqlg~ 386 (393)
|+||+||+ |.+||++.
T Consensus 237 g~v~~wG~------------n~~gq~~v 252 (282)
T 3qhy_B 237 GKVIAWGS------------SRTAPSSV 252 (282)
T ss_dssp TEEEEEST------------TCCCCGGG
T ss_pred CEEEEecC------------CCCccccC
Confidence 99999999 67888875
No 12
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=1.3e-47 Score=349.14 Aligned_cols=249 Identities=24% Similarity=0.336 Sum_probs=205.3
Q ss_pred ccccceeeeEeeeccccceEEEEEEcCCCCCcCCCCCCCeeeeeeeccccCCceeEEEeCCCeeEEEecCCcEEEEecCC
Q 016197 20 LGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLND 99 (393)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~I~~I~~G~~~~~~lt~~G~v~~wG~n~ 99 (393)
...+++..|.+++ + +++||+||.|.+||||.. .. ...+|++|+||..|+++|+ +|+||+||.|.
T Consensus 27 ~~ia~G~~h~~~l--~-~G~v~~wG~n~~Gqlg~p--------~~----~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~ 90 (282)
T 3qhy_B 27 DAIAGGYFHGLAL--K-GGKVLGWGANLNGQLTMP--------AA----TQSGVDAIAAGNYHSLALK-DGEVIAWGGNE 90 (282)
T ss_dssp CEEEECSSEEEEE--E-TTEEEEEECCSSSTTSCC--------GG----GGSCCCEEEECSSEEEEEE-TTEEEEEECCT
T ss_pred cEEEeCCCeEEEE--E-CCEEEEEeCCCCCCCCCC--------cc----CCCCEEEEEeCCCEEEEEE-CCEEEEeeCCC
Confidence 3444555677666 3 899999999999999952 21 2246999999999999996 99999999999
Q ss_pred CeeccCCCCCCceecceEeccCCCcEEEEEcCCceEEEEecCCcEEEEecCCCCCCCCCCCCCcccccCeEeccCCCceE
Q 016197 100 FGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFT 179 (393)
Q Consensus 100 ~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i 179 (393)
++|||.+ .++ ..+|++|+||..|+++|+ +|+||+||.|.+|||+.... ...+|
T Consensus 91 ~Gqlg~P---------~~~---~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~~--------------~~~~i 143 (282)
T 3qhy_B 91 DGQTTVP---------AEA---RSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPAE--------------AQSGV 143 (282)
T ss_dssp TSTTCCC---------GGG---SSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCGG--------------GGSSE
T ss_pred CCCCCCC---------ccc---CCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCcc--------------CCCCe
Confidence 9999852 222 348999999999999999 99999999999999983211 12359
Q ss_pred EEEecCCceEEEEeCCCcEEEEeCCCCCCCCCCCCCCccccccccccccceeeccccCccEEEEEeCCceeEEEecCCcE
Q 016197 180 KQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRV 259 (393)
Q Consensus 180 ~~i~~g~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G~v 259 (393)
++|+||.+|+++|+ +|+||+||.|.++||+... .+ ..+|++|+||.+|+++| ++|+|
T Consensus 144 ~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~p~-----------------~~----~~~v~~i~~G~~hs~al-~~G~v 200 (282)
T 3qhy_B 144 TALDGGVYTALAVK-NGGVIAWGDNYFGQTTVPA-----------------EA----QSGVDDVAGGIFHSLAL-KDGKV 200 (282)
T ss_dssp EEEEECSSEEEEEE-TTEEEEEECCTTSTTSCCG-----------------GG----GSSEEEEEECSSEEEEE-ETTEE
T ss_pred EEEEcccCEEEEEE-CCEEEEecCCCCCCCCCce-----------------ec----CCCeEEEEecCCEEEEE-ECCeE
Confidence 99999999999999 8999999999999997321 11 24799999999999999 89999
Q ss_pred EEEeCCCCCccccCCCCCcCCCccccCCCCcceEEeeCceeEEEEcCCCEEEEeCCCCCCCCCCCCCCccCceeecCCCC
Q 016197 260 YIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFS 339 (393)
Q Consensus 260 y~wG~n~~gqlg~~~~~~~~~p~~i~~~~~v~~v~~g~~~~~~lt~~g~v~~~G~n~~gqlG~g~~~~~~~p~~v~~~~~ 339 (393)
|+||.|.++|||.+. +.+.+|++|+||.+|+++++ +|+||+||.|.++|++. .
T Consensus 201 ~~wG~n~~gqlg~p~----------~~~~~v~~i~~G~~h~~al~-~g~v~~wG~n~~gq~~v------------~---- 253 (282)
T 3qhy_B 201 IAWGDNRYKQTTVPT----------EALSGVSAIASGEWYSLALK-NGKVIAWGSSRTAPSSV------------Q---- 253 (282)
T ss_dssp EEEECCTTSTTCCCG----------GGGSSCCEEEECSSCEEEEE-TTEEEEESTTCCCCGGG------------S----
T ss_pred EEEECCCCCCCCCCc----------ccCCCceEEEcCCCEEEEEE-CCEEEEecCCCCccccC------------C----
Confidence 999999999998532 23457999999999999999 99999999999998864 1
Q ss_pred CCCeEEEEeCCCceEEEE-CCcEE
Q 016197 340 ESPVDQVSCGWKHTAAIS-EGKIL 362 (393)
Q Consensus 340 ~~~i~~i~~G~~~t~~l~-~g~v~ 362 (393)
..|++|+||..|+++|+ +++.+
T Consensus 254 -~~v~~iaaG~~h~~al~~~~~~~ 276 (282)
T 3qhy_B 254 -SGVSSIEAGPNAAYALKGGSGSG 276 (282)
T ss_dssp -SCEEEEEECSSCEEEEEC-----
T ss_pred -CCcEEEEECcCeEEEEecCCCCC
Confidence 27999999999999999 76654
No 13
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.71 E-value=0.034 Score=52.43 Aligned_cols=239 Identities=8% Similarity=-0.001 Sum_probs=135.9
Q ss_pred CCceeEEEeCCCeeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcCCceEEEEecCCcEEEEec
Q 016197 70 KHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGK 149 (393)
Q Consensus 70 ~~~I~~I~~G~~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~ 149 (393)
...|..++......+.-..||.|.+|-..... ....+..-...|..++......+.-..+|.|..|-.
T Consensus 173 ~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~------------~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~ 240 (435)
T 1p22_A 173 TGSVLCLQYDERVIITGSSDSTVRVWDVNTGE------------MLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDM 240 (435)
T ss_dssp SSCEEEEECCSSEEEEEETTSCEEEEESSSCC------------EEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEEC
T ss_pred CCcEEEEEECCCEEEEEcCCCeEEEEECCCCc------------EEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeC
Confidence 35688888866666677889999999653211 112222234478888888888888899999999965
Q ss_pred CCCCCCCCCCCCCcccccCeEeccCCCceEEEEecCCceEEEEeCCCcEEEEeCCCCCCCCCCCCCCccccccccccccc
Q 016197 150 NSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTP 229 (393)
Q Consensus 150 n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p 229 (393)
..... .............|..++......+.-..+|.|..|-...... .
T Consensus 241 ~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--------------------~ 289 (435)
T 1p22_A 241 ASPTD-----------ITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEF--------------------V 289 (435)
T ss_dssp SSSSC-----------CEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCE--------------------E
T ss_pred CCCCC-----------ceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcE--------------------E
Confidence 42110 1111111112234667766667777778899999996532100 0
Q ss_pred eeeccccCccEEEEEeCCceeEEEecCCcEEEEeCCCCCccccCCCCCcCCCcccc-CCCCcceEEeeCceeEEEEcCCC
Q 016197 230 RLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLIS-KLPYSEEVVCGGYHTCVLTSGGE 308 (393)
Q Consensus 230 ~~i~~~~~~~i~~i~~g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~-~~~~v~~v~~g~~~~~~lt~~g~ 308 (393)
..+. .....|..+.......++-..+|.|..|-......+ ..+. ....|..++......+.-..||.
T Consensus 290 ~~~~-~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~-----------~~~~~h~~~v~~~~~~~~~l~sg~~dg~ 357 (435)
T 1p22_A 290 RTLN-GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACL-----------RVLEGHEELVRCIRFDNKRIVSGAYDGK 357 (435)
T ss_dssp EEEE-CCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEE-----------EEECCCSSCEEEEECCSSEEEEEETTSC
T ss_pred EEEc-CCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEE-----------EEEeCCcCcEEEEEecCCEEEEEeCCCc
Confidence 1111 112246666666677777788999999965431111 1111 12236677776667677788999
Q ss_pred EEEEeCCCCCCCCCCCCCCccCceeecCCCCCCCeEEEEeCCCceEEEE-CCcEEEEecC
Q 016197 309 LYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAIS-EGKILTWGWG 367 (393)
Q Consensus 309 v~~~G~n~~gqlG~g~~~~~~~p~~v~~~~~~~~i~~i~~G~~~t~~l~-~g~v~~wG~~ 367 (393)
|..|-.......... ........+. -....|..++......+.-. ||.|..|-..
T Consensus 358 i~vwd~~~~~~~~~~--~~~~~~~~~~--~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~ 413 (435)
T 1p22_A 358 IKVWDLVAALDPRAP--AGTLCLRTLV--EHSGRVFRLQFDEFQIVSSSHDDTILIWDFL 413 (435)
T ss_dssp EEEEEHHHHTSTTSC--TTTTEEEEEC--CCSSCCCCEEECSSCEEECCSSSEEEEEC--
T ss_pred EEEEECCCCCCcccc--ccchheeecc--CCCCCeEEEEeCCCEEEEEeCCCEEEEEECC
Confidence 999975331110000 0000011111 12335666776555544444 8999999764
No 14
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.25 E-value=0.14 Score=48.29 Aligned_cols=228 Identities=9% Similarity=0.031 Sum_probs=135.8
Q ss_pred CCceeEEEeCCCeeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcCCceEEEEecCCcEEEEec
Q 016197 70 KHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGK 149 (393)
Q Consensus 70 ~~~I~~I~~G~~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~ 149 (393)
...|..++......+.-..||.|.+|-.... .....+..-...|..++......+.-..+|.|+.|-.
T Consensus 159 ~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~------------~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~ 226 (445)
T 2ovr_B 159 TGGVWSSQMRDNIIISGSTDRTLKVWNAETG------------ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDI 226 (445)
T ss_dssp SSCEEEEEEETTEEEEEETTSCEEEEETTTT------------EEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEES
T ss_pred CCCEEEEEecCCEEEEEeCCCeEEEEECCcC------------cEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEEC
Confidence 3467777777777777788999999965321 1112233334478888777778888889999999965
Q ss_pred CCCCCCCCCCCCCcccccCeEeccCCCceEEEEecCCceEEEEeCCCcEEEEeCCCCCCCCCCCCCCccccccccccccc
Q 016197 150 NSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTP 229 (393)
Q Consensus 150 n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p 229 (393)
.... ....+. .....|..++......+.-..+|.|..|-.... ...
T Consensus 227 ~~~~-------------~~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~--------------------~~~ 272 (445)
T 2ovr_B 227 ETGQ-------------CLHVLM-GHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE--------------------TCL 272 (445)
T ss_dssp SSCC-------------EEEEEE-CCSSCEEEEEECSSCEEEEETTSCEEEEEGGGT--------------------EEE
T ss_pred CCCc-------------EEEEEc-CCcccEEEEEECCCEEEEEcCCCEEEEEECCCC--------------------cEe
Confidence 4210 001111 122346666666667777788999999954211 000
Q ss_pred eeeccccCccEEEEEeCCceeEEEecCCcEEEEeCCCCCccccCCCCCcCCCcccc-CCCCcceEEeeCceeEEEEcCCC
Q 016197 230 RLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLIS-KLPYSEEVVCGGYHTCVLTSGGE 308 (393)
Q Consensus 230 ~~i~~~~~~~i~~i~~g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~-~~~~v~~v~~g~~~~~~lt~~g~ 308 (393)
..+. .....|..+.......+.-..+|.|..|-......+ ..+. ....+..+.......+.-..||.
T Consensus 273 ~~~~-~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-----------~~~~~~~~~v~~~~~~~~~l~~~~~dg~ 340 (445)
T 2ovr_B 273 HTLQ-GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCI-----------HTLTGHQSLTSGMELKDNILVSGNADST 340 (445)
T ss_dssp EEEC-CCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEE-----------EEECCCCSCEEEEEEETTEEEEEETTSC
T ss_pred EEec-CCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEE-----------EEEcCCcccEEEEEEeCCEEEEEeCCCe
Confidence 1111 112356777766677777788999999965432111 0111 11235666666777777888999
Q ss_pred EEEEeCCCCCCCCCCCCCCccCceeecCC-CCCCCeEEEEeCCCceEEEE-CCcEEEEec
Q 016197 309 LYTWGSNENGCLGIGSIDVLHSPERVQGP-FSESPVDQVSCGWKHTAAIS-EGKILTWGW 366 (393)
Q Consensus 309 v~~~G~n~~gqlG~g~~~~~~~p~~v~~~-~~~~~i~~i~~G~~~t~~l~-~g~v~~wG~ 366 (393)
|..|-....-. ...+..+ -....|..++......+.-. ||.|..|-.
T Consensus 341 i~vwd~~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~ 389 (445)
T 2ovr_B 341 VKIWDIKTGQC-----------LQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDL 389 (445)
T ss_dssp EEEEETTTCCE-----------EEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEET
T ss_pred EEEEECCCCcE-----------EEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEEC
Confidence 99997643110 1111111 12346777777665555555 899999975
No 15
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.90 E-value=0.29 Score=46.01 Aligned_cols=192 Identities=5% Similarity=-0.063 Sum_probs=113.6
Q ss_pred CceeEEEeCCCeeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcCCceEEEEecCCcEEEEecC
Q 016197 71 HSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKN 150 (393)
Q Consensus 71 ~~I~~I~~G~~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n 150 (393)
..|..++......+.-..||.|.+|-..... ....+......|..++......+.-..+|.|+.|-..
T Consensus 200 ~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~------------~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~ 267 (445)
T 2ovr_B 200 STVRCMHLHEKRVVSGSRDATLRVWDIETGQ------------CLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPE 267 (445)
T ss_dssp SCEEEEEEETTEEEEEETTSEEEEEESSSCC------------EEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGG
T ss_pred CcEEEEEecCCEEEEEeCCCEEEEEECCCCc------------EEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECC
Confidence 4577777777777777888999998643211 1112222344777787777778888889999999643
Q ss_pred CCCCCCCCCCCCcccccCeEeccCCCceEEEEecCCceEEEEeCCCcEEEEeCCCCCCCCCCCCCCccccccccccccce
Q 016197 151 SNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPR 230 (393)
Q Consensus 151 ~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~ 230 (393)
.. .....+. .....|..+.....+.+.-..+|.|..|-...... ..
T Consensus 268 ~~-------------~~~~~~~-~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--------------------~~ 313 (445)
T 2ovr_B 268 TE-------------TCLHTLQ-GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNC--------------------IH 313 (445)
T ss_dssp GT-------------EEEEEEC-CCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCE--------------------EE
T ss_pred CC-------------cEeEEec-CCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCE--------------------EE
Confidence 21 0111111 12234777777667777778899999996533110 00
Q ss_pred eeccccCccEEEEEeCCceeEEEecCCcEEEEeCCCCCccccCCCCCcCCCccccCCCCcceEEeeCceeEEEEcCCCEE
Q 016197 231 LIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELY 310 (393)
Q Consensus 231 ~i~~~~~~~i~~i~~g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~v~~v~~g~~~~~~lt~~g~v~ 310 (393)
.+. .....+..+.......++-..+|.|..|-......+.. ... .......|..++....+.+.-..||.|.
T Consensus 314 ~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-----~~~--~~~~~~~v~~~~~~~~~l~s~~~dg~v~ 385 (445)
T 2ovr_B 314 TLT-GHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQT-----LQG--PNKHQSAVTCLQFNKNFVITSSDDGTVK 385 (445)
T ss_dssp EEC-CCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEE-----ECS--TTSCSSCEEEEEECSSEEEEEETTSEEE
T ss_pred EEc-CCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEE-----Ecc--CCCCCCCEEEEEECCCEEEEEeCCCeEE
Confidence 111 11124555665666777778899999996543111100 000 0011224677777777777778899999
Q ss_pred EEeCCC
Q 016197 311 TWGSNE 316 (393)
Q Consensus 311 ~~G~n~ 316 (393)
.|-...
T Consensus 386 iwd~~~ 391 (445)
T 2ovr_B 386 LWDLKT 391 (445)
T ss_dssp EEETTT
T ss_pred EEECCC
Confidence 998643
No 16
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.77 E-value=0.36 Score=45.24 Aligned_cols=228 Identities=9% Similarity=0.053 Sum_probs=137.6
Q ss_pred CceeEEEeCCCeeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcCCceEEEEecCCcEEEEecC
Q 016197 71 HSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKN 150 (393)
Q Consensus 71 ~~I~~I~~G~~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n 150 (393)
..|..++....+.+.-..||.|.+|-.... .....+..-...|..++......+.-..+|.|..|-..
T Consensus 134 ~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~------------~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 134 KGVYCLQYDDQKIVSGLRDNTIKIWDKNTL------------ECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp CCEEEEECCSSEEEEEESSSCEEEEESSSC------------CEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESS
T ss_pred CcEEEEEECCCEEEEEeCCCeEEEEeCCCC------------eEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECC
Confidence 357777777777777788999999954321 11122333345888888877777777889999999654
Q ss_pred CCCCCCCCCCCCcccccCeEeccCCCceEEEEecCCceEEEEeCCCcEEEEeCCCCCCCCCCCCCCccccccccccccce
Q 016197 151 SNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPR 230 (393)
Q Consensus 151 ~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~ 230 (393)
+.- ....+. .....|..+.......+.-..+|.|..|-...... ..+.
T Consensus 202 ~~~-------------~~~~~~-~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~------------------~~~~ 249 (435)
T 1p22_A 202 TGE-------------MLNTLI-HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD------------------ITLR 249 (435)
T ss_dssp SCC-------------EEEEEC-CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSC------------------CEEE
T ss_pred CCc-------------EEEEEc-CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCC------------------ceee
Confidence 210 011111 12335778887777788888999999996532110 0000
Q ss_pred eeccccCccEEEEEeCCceeEEEecCCcEEEEeCCCCCccccCCCCCcCCCcccc-CCCCcceEEeeCceeEEEEcCCCE
Q 016197 231 LIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLIS-KLPYSEEVVCGGYHTCVLTSGGEL 309 (393)
Q Consensus 231 ~i~~~~~~~i~~i~~g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~-~~~~v~~v~~g~~~~~~lt~~g~v 309 (393)
.........|..+.......++-..+|.|..|-......+ ..+. ....|..+.......++-..||.|
T Consensus 250 ~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-----------~~~~~~~~~v~~~~~~~~~l~~g~~dg~i 318 (435)
T 1p22_A 250 RVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFV-----------RTLNGHKRGIACLQYRDRLVVSGSSDNTI 318 (435)
T ss_dssp EEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEE-----------EEEECCSSCEEEEEEETTEEEEEETTSCE
T ss_pred eEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEE-----------EEEcCCCCcEEEEEeCCCEEEEEeCCCeE
Confidence 1111112356666666677777788999999965431111 1111 122366677767777778889999
Q ss_pred EEEeCCCCCCCCCCCCCCccCceeecCCCCCCCeEEEEeCCCceEEEE-CCcEEEEec
Q 016197 310 YTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAIS-EGKILTWGW 366 (393)
Q Consensus 310 ~~~G~n~~gqlG~g~~~~~~~p~~v~~~~~~~~i~~i~~G~~~t~~l~-~g~v~~wG~ 366 (393)
..|-.... + ....+. -....|..++......+.-. ||.|..|=.
T Consensus 319 ~iwd~~~~-~----------~~~~~~--~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 319 RLWDIECG-A----------CLRVLE--GHEELVRCIRFDNKRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp EEEETTTC-C----------EEEEEC--CCSSCEEEEECCSSEEEEEETTSCEEEEEH
T ss_pred EEEECCCC-C----------EEEEEe--CCcCcEEEEEecCCEEEEEeCCCcEEEEEC
Confidence 99986431 1 011111 12346777777555555555 899999964
No 17
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=96.17 E-value=0.012 Score=50.27 Aligned_cols=72 Identities=17% Similarity=0.325 Sum_probs=60.6
Q ss_pred CceeEEEeCCCeeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcCCceEEEEecCCcEEEEecC
Q 016197 71 HSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKN 150 (393)
Q Consensus 71 ~~I~~I~~G~~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n 150 (393)
.+|.+|+--..|..++--|++++.||++++||+-+.. ...++.++.+|.++++-+..-..+-.||..
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~-------------tagPfla~~AG~~fTVTVn~~nyv~FWGDS 375 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDD-------------HAGPYIQLAAGHNFTVTVNTLNQVMFWGDS 375 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCG-------------GGCCEEEEEECSSEEEEEETTCCEEEEECC
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCC-------------CcchHHhHhccCCeEEEEeceeeEEEecCC
Confidence 5688999899999999999999999999999976542 223788899999999999999999999976
Q ss_pred CCCCC
Q 016197 151 SNGQL 155 (393)
Q Consensus 151 ~~gql 155 (393)
-.+.|
T Consensus 376 PDNSL 380 (400)
T 4gbf_A 376 PDNSL 380 (400)
T ss_dssp TTSTT
T ss_pred CCcce
Confidence 65555
No 18
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=96.05 E-value=0.91 Score=41.90 Aligned_cols=138 Identities=12% Similarity=0.024 Sum_probs=77.2
Q ss_pred eeccccceEEEEEEcCCCCCcCCCCCCCeeeeeeeccccCCceeEEEeCCC--eeEEEecCCcEEEEecCCCeeccCCCC
Q 016197 31 ISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGA--HTLFLTETGCVYATGLNDFGQLGISEN 108 (393)
Q Consensus 31 ~~~~~~~~~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~I~~I~~G~~--~~~~lt~~G~v~~wG~n~~g~lg~~~~ 108 (393)
+++...++.|++|-... .. ....+.......|..|+...+ +.++-..+|.|.+|-....
T Consensus 106 l~~~~~d~~v~lw~~~~---------~~--~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~-------- 166 (401)
T 4aez_A 106 VVAVALERNVYVWNADS---------GS--VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ-------- 166 (401)
T ss_dssp EEEEEETTEEEEEETTT---------CC--EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC--------
T ss_pred EEEEECCCeEEEeeCCC---------Cc--EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC--------
Confidence 44455677788886432 11 111122113456777777543 4455567899999964321
Q ss_pred CCceecceEeccCCCcEEEEEcCCceEEEEecCCcEEEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEec--CC
Q 016197 109 IGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL--GF 186 (393)
Q Consensus 109 ~~~~~~p~~i~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~--g~ 186 (393)
.....+......|..++......+.-..+|.|+.|-....+ .....+.. ....|..++. ..
T Consensus 167 ----~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~------------~~~~~~~~-~~~~v~~~~~~~~~ 229 (401)
T 4aez_A 167 ----TKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIAN------------HQIGTLQG-HSSEVCGLAWRSDG 229 (401)
T ss_dssp ----CEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSS------------CEEEEEEC-CSSCEEEEEECTTS
T ss_pred ----eEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCc------------ceeeEEcC-CCCCeeEEEEcCCC
Confidence 11122223344788888777778888889999999654211 00111111 1223555544 33
Q ss_pred ceEEEEeCCCcEEEEeCC
Q 016197 187 EQSVAVTGGGKVLSWGAG 204 (393)
Q Consensus 187 ~~s~~lt~~G~v~~~G~n 204 (393)
...+.-..+|.|..|-..
T Consensus 230 ~~l~s~~~d~~v~iwd~~ 247 (401)
T 4aez_A 230 LQLASGGNDNVVQIWDAR 247 (401)
T ss_dssp SEEEEEETTSCEEEEETT
T ss_pred CEEEEEeCCCeEEEccCC
Confidence 455666788999999653
No 19
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=95.79 E-value=0.29 Score=49.05 Aligned_cols=68 Identities=19% Similarity=0.371 Sum_probs=35.4
Q ss_pred CceeEEEEcCCCEEEEeCCCCCCCCCCCCCCccCceeecCCCCCCCeEEEE----eCCCceEEE-E-CCcEEEEecC
Q 016197 297 GYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVS----CGWKHTAAI-S-EGKILTWGWG 367 (393)
Q Consensus 297 ~~~~~~lt~~g~v~~~G~n~~gqlG~g~~~~~~~p~~v~~~~~~~~i~~i~----~G~~~t~~l-~-~g~v~~wG~~ 367 (393)
..|.+++..+|+||..|....++- .+.......+.... + ...+...+. .-..|++++ . ||+||+.|.+
T Consensus 457 ~~~~~~~l~~g~i~v~GG~~~~~~-~~~~~~~~~v~~yd-p-~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 457 TFHTSVVLPDGSTFITGGQRRGIP-FEDSTPVFTPEIYV-P-EQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp BSCEEEECTTSCEEEECCBSBCCT-TCCCSBCCCCEEEE-G-GGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred ccCCeEECCCCCEEEECCcccCcC-cCCCCcccceEEEc-C-CCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 356777777999999997554321 11111111122111 0 111222211 234677554 4 9999999985
No 20
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=95.76 E-value=0.028 Score=47.98 Aligned_cols=71 Identities=28% Similarity=0.422 Sum_probs=60.1
Q ss_pred cEEEEEcCCceEEEEecCCcEEEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecCCceEEEEeCCCcEEEEeC
Q 016197 124 EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGA 203 (393)
Q Consensus 124 ~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~s~~lt~~G~v~~~G~ 203 (393)
.|..|+-...|..++--+++|+.+|.++.||+-+....- +..++.+|.++++-+..-+.+-.||+
T Consensus 310 ~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~tag---------------Pfla~~AG~~fTVTVn~~nyv~FWGD 374 (400)
T 4gbf_A 310 PIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDHAG---------------PYIQLAAGHNFTVTVNTLNQVMFWGD 374 (400)
T ss_dssp CCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGGGC---------------CEEEEEECSSEEEEEETTCCEEEEEC
T ss_pred ccccccccccceEEEecCceeEEeccCCCCceecCCCcc---------------hHHhHhccCCeEEEEeceeeEEEecC
Confidence 788899999999999999999999999999986554432 48899999999999999999999998
Q ss_pred CCCCCC
Q 016197 204 GGSGRL 209 (393)
Q Consensus 204 n~~gql 209 (393)
.....|
T Consensus 375 SPDNSL 380 (400)
T 4gbf_A 375 SPDNSL 380 (400)
T ss_dssp CTTSTT
T ss_pred CCCcce
Confidence 654444
No 21
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=95.27 E-value=1.5 Score=39.07 Aligned_cols=195 Identities=10% Similarity=0.022 Sum_probs=103.4
Q ss_pred cCCceeEEEeCCC-----eeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcC--CceEEEEecC
Q 016197 69 EKHSLKALACGGA-----HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVD 141 (393)
Q Consensus 69 ~~~~I~~I~~G~~-----~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g--~~~~~~lt~~ 141 (393)
....|..|+...+ +.+.-..||.|.+|-....+ ......+..-...|..++.. ....+.-..+
T Consensus 38 h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~----------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 107 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG----------QTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD 107 (368)
T ss_dssp CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS----------CEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC----------ceeEEEeccccCCEEEEEECcCCCEEEEEcCC
Confidence 4567889988775 34444778999999654311 11112333334577777764 3456667789
Q ss_pred CcEEEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEec--CC--ceEEEEeCCCcEEEEeCCCCCCCCCCCCCCc
Q 016197 142 GELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL--GF--EQSVAVTGGGKVLSWGAGGSGRLGHGQESSI 217 (393)
Q Consensus 142 G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~--g~--~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~ 217 (393)
|.|..|-.... ....+.. ....|..+.. .. ...+.-..+|.|+.|-......
T Consensus 108 g~v~iwd~~~~--------------~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--------- 163 (368)
T 3mmy_A 108 KTAKMWDLSSN--------------QAIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP--------- 163 (368)
T ss_dssp SEEEEEETTTT--------------EEEEEEE-CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC---------
T ss_pred CcEEEEEcCCC--------------Cceeecc-ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE---------
Confidence 99999965421 0111111 1224666654 22 3345556789999995432100
Q ss_pred cccccccccccceeeccccCccEEEEEeCCceeEEEecCCcEEEEeCCCCCccccCCCCCcCCCccccCCCCcceEEeeC
Q 016197 218 LGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGG 297 (393)
Q Consensus 218 ~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~v~~v~~g~ 297 (393)
...+.. ...+..+.......++.+.++.+..|-.......- ............+..+....
T Consensus 164 -----------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 224 (368)
T 3mmy_A 164 -----------MMVLQL--PERCYCADVIYPMAVVATAERGLIVYQLENQPSEF------RRIESPLKHQHRCVAIFKDK 224 (368)
T ss_dssp -----------SEEEEC--SSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEE------EECCCSCSSCEEEEEEEECT
T ss_pred -----------EEEEec--CCCceEEEecCCeeEEEeCCCcEEEEEeccccchh------hhccccccCCCceEEEcccC
Confidence 011111 11455555556677888889999988654321110 00000011111133333333
Q ss_pred ce----eEEEEcCCCEEEEeCCC
Q 016197 298 YH----TCVLTSGGELYTWGSNE 316 (393)
Q Consensus 298 ~~----~~~lt~~g~v~~~G~n~ 316 (393)
.. .++-..+|.|..|-...
T Consensus 225 ~~~~~~~~~~~~dg~i~i~~~~~ 247 (368)
T 3mmy_A 225 QNKPTGFALGSIEGRVAIHYINP 247 (368)
T ss_dssp TSCEEEEEEEETTSEEEEEESSC
T ss_pred CCCCCeEEEecCCCcEEEEecCC
Confidence 22 66677889998887654
No 22
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=94.89 E-value=2 Score=38.34 Aligned_cols=263 Identities=8% Similarity=0.013 Sum_probs=124.1
Q ss_pred CceeEEEeCCC------eeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcC---CceEEEEecC
Q 016197 71 HSLKALACGGA------HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG---YHHSSAITVD 141 (393)
Q Consensus 71 ~~I~~I~~G~~------~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g---~~~~~~lt~~ 141 (393)
..|..++.... +.+.-..+|.|.+|-.... .....+......|..++.. ....+.-..+
T Consensus 70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~------------~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~d 137 (366)
T 3k26_A 70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM------------QCIKHYVGHGNAINELKFHPRDPNLLLSVSKD 137 (366)
T ss_dssp CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC------------CEEEEEESCCSCEEEEEECSSCTTEEEEEETT
T ss_pred CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc------------eEeeeecCCCCcEEEEEECCCCCCEEEEEeCC
Confidence 45766666544 4555578899999954321 1112233344578887764 3556666789
Q ss_pred CcEEEEecCCCCCCCCCCCCCcccccCeEec--cCCCceEEEEecC--CceEEEEeCCCcEEEEeCCCCCCCCC------
Q 016197 142 GELYMWGKNSNGQLGLGKKAAKVIPIPTKVE--CLSGIFTKQAALG--FEQSVAVTGGGKVLSWGAGGSGRLGH------ 211 (393)
Q Consensus 142 G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~--~~~~~~i~~i~~g--~~~s~~lt~~G~v~~~G~n~~gqlg~------ 211 (393)
|.|+.|-.... .....+. ......|..++.. ....+....+|.|..|-......+..
T Consensus 138 g~i~iwd~~~~-------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 204 (366)
T 3k26_A 138 HALRLWNIQTD-------------TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 204 (366)
T ss_dssp SCEEEEETTTT-------------EEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHT
T ss_pred CeEEEEEeecC-------------eEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEE
Confidence 99999965321 0111110 1122346666543 34566667889999996543211000
Q ss_pred -CCCCCccccccccccccce-eeccccCccEEEEEeCCceeEEEecCCcEEEEeCCCCCccccCCCCCcCCCccccC---
Q 016197 212 -GQESSILGFLRSTSEYTPR-LIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK--- 286 (393)
Q Consensus 212 -~~~~~~~~~~~~~~~~~p~-~i~~~~~~~i~~i~~g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~--- 286 (393)
.+......... .....|. .........|..++-.....+....+|.|..|-.....+..............+..
T Consensus 205 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (366)
T 3k26_A 205 YNPNKTNRPFIS-QKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDY 283 (366)
T ss_dssp CCGGGCSSCCCC-EEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEEC
T ss_pred ecCCCCcccccc-eeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccc
Confidence 00000000000 0000000 00011222444554446667777789999999754432211110000000011110
Q ss_pred -CCCcceEEee----CceeEEEEcCCCEEEEeCCCCCCCCCCCCCCccCceeecCCCCCCCeEEEEeCCCce--EEEE-C
Q 016197 287 -LPYSEEVVCG----GYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHT--AAIS-E 358 (393)
Q Consensus 287 -~~~v~~v~~g----~~~~~~lt~~g~v~~~G~n~~gqlG~g~~~~~~~p~~v~~~~~~~~i~~i~~G~~~t--~~l~-~ 358 (393)
...|..++.. ....++-..||.|+.|-......+ ......+........|..++...... +.-. |
T Consensus 284 ~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~-------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 356 (366)
T 3k26_A 284 SQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPH-------KAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDD 356 (366)
T ss_dssp SSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGG-------GCEEEEECCTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred cCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCc-------cccceEEcccccCCceEEEEeCCCCCeEEEEeCC
Confidence 1123333332 445555678899999986442110 00111222111145788887765433 3333 8
Q ss_pred CcEEEEec
Q 016197 359 GKILTWGW 366 (393)
Q Consensus 359 g~v~~wG~ 366 (393)
|.|+.|=.
T Consensus 357 g~i~iwd~ 364 (366)
T 3k26_A 357 ASIWRWDR 364 (366)
T ss_dssp SEEEEEEC
T ss_pred CEEEEEEe
Confidence 99999954
No 23
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.82 E-value=2.5 Score=42.56 Aligned_cols=64 Identities=17% Similarity=0.132 Sum_probs=33.0
Q ss_pred CCeeEEEec-CCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEE----cCCceEEEEecCCcEEEEecC
Q 016197 80 GAHTLFLTE-TGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIS----TGYHHSSAITVDGELYMWGKN 150 (393)
Q Consensus 80 ~~~~~~lt~-~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~----~g~~~~~~lt~~G~vy~~G~n 150 (393)
..|++++.. +|++|++|-..... .....-............+. .-..|++++..+++||.+|-.
T Consensus 441 ~~hs~~~~~~~~~lyv~GG~~~~~-------~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~ 509 (695)
T 2zwa_A 441 MCHTFTTISRNNQLLLIGGRKAPH-------QGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGV 509 (695)
T ss_dssp BSCEEEEETTTTEEEEECCBSSTT-------CBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCB
T ss_pred cceEEEEEccCCEEEEEcCCCCCC-------CccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCC
Confidence 357777765 89999999532210 00001111111111233322 234566666558899999854
No 24
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=94.79 E-value=2 Score=37.83 Aligned_cols=225 Identities=9% Similarity=-0.028 Sum_probs=112.8
Q ss_pred CCceeEEEeCCC--eeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcC--CceEEEEecCCcEE
Q 016197 70 KHSLKALACGGA--HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELY 145 (393)
Q Consensus 70 ~~~I~~I~~G~~--~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g--~~~~~~lt~~G~vy 145 (393)
...|..++...+ ..++-..+|.|++|-.... .......+......|..++.. ....+.-..+|.|+
T Consensus 97 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~----------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~ 166 (337)
T 1gxr_A 97 DNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP----------TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIA 166 (337)
T ss_dssp TSBEEEEEECTTSSEEEEEESSSEEEEEECCCC------------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCC----------CcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEE
Confidence 345777776644 3444467889999964321 101112222233467666653 44566667889999
Q ss_pred EEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEec--CCceEEEEeCCCcEEEEeCCCCCCCCCCCCCCccccccc
Q 016197 146 MWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL--GFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRS 223 (393)
Q Consensus 146 ~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~--g~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~ 223 (393)
.|-.... .....+.. ....|..++. .....+....+|.|+.|-......
T Consensus 167 ~~d~~~~-------------~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~--------------- 217 (337)
T 1gxr_A 167 VWDLHNQ-------------TLVRQFQG-HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ--------------- 217 (337)
T ss_dssp EEETTTT-------------EEEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE---------------
T ss_pred EEeCCCC-------------ceeeeeec-ccCceEEEEECCCCCEEEEEecCCcEEEEECCCCce---------------
Confidence 9965321 01111111 1223555554 334556667889999996432100
Q ss_pred cccccceeeccccCccEEEEEeC--CceeEEEecCCcEEEEeCCCCCccccCCCCCcCCCccccCCCCcceEEeeC--ce
Q 016197 224 TSEYTPRLIKELEGVKVKIAAAG--FLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGG--YH 299 (393)
Q Consensus 224 ~~~~~p~~i~~~~~~~i~~i~~g--~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~v~~v~~g~--~~ 299 (393)
...+. ....+..++.. ....++-..+|.|+.|-...... .........|..++... ..
T Consensus 218 -----~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-----------~~~~~~~~~v~~~~~~~~~~~ 279 (337)
T 1gxr_A 218 -----LQQHD--FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-----------YQLHLHESCVLSLKFAYCGKW 279 (337)
T ss_dssp -----EEEEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-----------EEECCCSSCEEEEEECTTSSE
T ss_pred -----Eeeec--CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-----------EEEcCCccceeEEEECCCCCE
Confidence 00111 11234444443 33445556788888885443111 01111122366666553 34
Q ss_pred eEEEEcCCCEEEEeCCCCCCCCCCCCCCccCceeecCCCCCCCeEEEEeCCCc--eEEEE-CCcEEEEe
Q 016197 300 TCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKH--TAAIS-EGKILTWG 365 (393)
Q Consensus 300 ~~~lt~~g~v~~~G~n~~gqlG~g~~~~~~~p~~v~~~~~~~~i~~i~~G~~~--t~~l~-~g~v~~wG 365 (393)
.+....+|.|..|-......+ .... ....|..++...+. .++-. ||.|+.|=
T Consensus 280 l~~~~~dg~i~~~~~~~~~~~-----------~~~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 280 FVSTGKDNLLNAWRTPYGASI-----------FQSK---ESSSVLSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp EEEEETTSEEEEEETTTCCEE-----------EEEE---CSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred EEEecCCCcEEEEECCCCeEE-----------EEec---CCCcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 555667888999875432111 1111 22356666554433 23333 78888873
No 25
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.45 E-value=0.93 Score=45.73 Aligned_cols=19 Identities=11% Similarity=-0.053 Sum_probs=14.9
Q ss_pred CceeEEEEcCCCEEEEeCC
Q 016197 297 GYHTCVLTSGGELYTWGSN 315 (393)
Q Consensus 297 ~~~~~~lt~~g~v~~~G~n 315 (393)
..|++++..+++||.+|..
T Consensus 598 ~~~~~~~~~~~~iyv~GG~ 616 (695)
T 2zwa_A 598 YGSQIKYITPRKLLIVGGT 616 (695)
T ss_dssp BSCEEEEEETTEEEEECCB
T ss_pred ccceEEEeCCCEEEEECCc
Confidence 4677777777999999964
No 26
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=94.30 E-value=3.5 Score=38.55 Aligned_cols=240 Identities=8% Similarity=-0.017 Sum_probs=124.8
Q ss_pred CCceeEEEeCCC-eeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcC----CceEEEEecCCcE
Q 016197 70 KHSLKALACGGA-HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG----YHHSSAITVDGEL 144 (393)
Q Consensus 70 ~~~I~~I~~G~~-~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g----~~~~~~lt~~G~v 144 (393)
...|..++...+ ..+.-..||.|.+|-..... ....+......|..++.. ....+.-+.+|.|
T Consensus 162 ~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~------------~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i 229 (464)
T 3v7d_B 162 DGGVWALKYAHGGILVSGSTDRTVRVWDIKKGC------------CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTL 229 (464)
T ss_dssp SSCEEEEEECSTTEEEEEETTSCEEEEETTTTE------------EEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCE
T ss_pred CcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCc------------EEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcE
Confidence 346778877544 44555789999999653211 112222233466665542 3556777889999
Q ss_pred EEEecCCCCCCCCCCCCCc-------ccccC--eEeccCCCceEEEEecCCceEEEEeCCCcEEEEeCCCCCCCCCCCCC
Q 016197 145 YMWGKNSNGQLGLGKKAAK-------VIPIP--TKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQES 215 (393)
Q Consensus 145 y~~G~n~~gqlg~~~~~~~-------~~~~~--~~~~~~~~~~i~~i~~g~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~ 215 (393)
..|-............... ....+ ..........+..++......+.-..+|.|..|-......
T Consensus 230 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~------- 302 (464)
T 3v7d_B 230 HVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKC------- 302 (464)
T ss_dssp EEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEE-------
T ss_pred EEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-------
Confidence 9997654322211000000 00000 1111112234666666666777778899999996532100
Q ss_pred CccccccccccccceeeccccCccEEEEEeCC--ceeEEEecCCcEEEEeCCCCCccccCCCCCcCCCcccc-CCCCcce
Q 016197 216 SILGFLRSTSEYTPRLIKELEGVKVKIAAAGF--LHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLIS-KLPYSEE 292 (393)
Q Consensus 216 ~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~--~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~-~~~~v~~ 292 (393)
...+. .....|..++... ...+.-..+|.|+.|-......+ ..+. ....|..
T Consensus 303 -------------~~~~~-~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~-----------~~~~~h~~~v~~ 357 (464)
T 3v7d_B 303 -------------LYILS-GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELM-----------YTLQGHTALVGL 357 (464)
T ss_dssp -------------EEEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE-----------EEECCCSSCEEE
T ss_pred -------------EEEec-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE-----------EEEeCCCCcEEE
Confidence 00111 1122455555443 35566678889999864331111 1111 1223667
Q ss_pred EEeeCceeEEEEcCCCEEEEeCCCCCCCCCCCCCCccCceeecCCCCCCCeEEEEeCCCceEEEE-CCcEEEEec
Q 016197 293 VVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAIS-EGKILTWGW 366 (393)
Q Consensus 293 v~~g~~~~~~lt~~g~v~~~G~n~~gqlG~g~~~~~~~p~~v~~~~~~~~i~~i~~G~~~t~~l~-~g~v~~wG~ 366 (393)
++....+.+....||.|..|-.....+ ...... .....+..+..... .++.. +|.|..|=.
T Consensus 358 ~~~~~~~l~s~s~dg~v~vwd~~~~~~-----------~~~~~~-~~~~~~~~~~~~~~-~l~~~~dg~i~iwd~ 419 (464)
T 3v7d_B 358 LRLSDKFLVSAAADGSIRGWDANDYSR-----------KFSYHH-TNLSAITTFYVSDN-ILVSGSENQFNIYNL 419 (464)
T ss_dssp EEECSSEEEEEETTSEEEEEETTTCCE-----------EEEEEC-TTCCCEEEEEECSS-EEEEEETTEEEEEET
T ss_pred EEEcCCEEEEEeCCCcEEEEECCCCce-----------eeeecC-CCCccEEEEEeCCC-EEEEecCCeEEEEEC
Confidence 777777777888999999998654211 111111 11223444444333 34444 888988865
No 27
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=94.27 E-value=2.5 Score=36.75 Aligned_cols=227 Identities=9% Similarity=0.042 Sum_probs=118.5
Q ss_pred CCceeEEEeC--CCeeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcCCceEEEEecCCcEEEE
Q 016197 70 KHSLKALACG--GAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMW 147 (393)
Q Consensus 70 ~~~I~~I~~G--~~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g~~~~~~lt~~G~vy~~ 147 (393)
...|..++.. ..+.+.-..+|.+..|--... ........+......|..++......+.-..+|.|+.|
T Consensus 59 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~---------~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~ 129 (313)
T 3odt_A 59 QGFLNSVCYDSEKELLLFGGKDTMINGVPLFAT---------SGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVW 129 (313)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSCEEEEETTCC---------TTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEE
T ss_pred CccEEEEEECCCCCEEEEecCCCeEEEEEeeec---------CCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEE
Confidence 3456666554 334455567888888754321 00011122233344788888877778888889999999
Q ss_pred ecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEec---CCceEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccccccc
Q 016197 148 GKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL---GFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRST 224 (393)
Q Consensus 148 G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~---g~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~ 224 (393)
-.. ... ..+. .....+..+.. .....+....+|.|..|-...
T Consensus 130 d~~--------------~~~-~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~------------------- 174 (313)
T 3odt_A 130 KEG--------------SLV-YNLQ-AHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK------------------- 174 (313)
T ss_dssp ETT--------------EEE-EEEE-CCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE-------------------
T ss_pred cCC--------------cEE-Eecc-cCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc-------------------
Confidence 410 011 1111 11223444332 456677778899999994110
Q ss_pred ccccceeeccccCccEEEEEeCC-ceeEEEecCCcEEEEeCCCCCccccCCCCCcCCCcccc-CCCCcceEEeeCc-eeE
Q 016197 225 SEYTPRLIKELEGVKVKIAAAGF-LHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLIS-KLPYSEEVVCGGY-HTC 301 (393)
Q Consensus 225 ~~~~p~~i~~~~~~~i~~i~~g~-~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~-~~~~v~~v~~g~~-~~~ 301 (393)
....+.......+..++... ...++...+|.|+.|-......+ ..+. ....|..++...+ ..+
T Consensus 175 ---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~-----------~~~~~~~~~i~~~~~~~~~~l~ 240 (313)
T 3odt_A 175 ---VIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVL-----------RTYEGHESFVYCIKLLPNGDIV 240 (313)
T ss_dssp ---EEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEE-----------EEEECCSSCEEEEEECTTSCEE
T ss_pred ---eEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhh-----------hhhhcCCceEEEEEEecCCCEE
Confidence 00111111122344443321 22566678889999965431111 1111 1223666665443 456
Q ss_pred EEEcCCCEEEEeCCCCCCCCCCCCCCccCceeecCCCCCCCeEEEEeCCCceEE-EE-CCcEEEEecC
Q 016197 302 VLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAA-IS-EGKILTWGWG 367 (393)
Q Consensus 302 ~lt~~g~v~~~G~n~~gqlG~g~~~~~~~p~~v~~~~~~~~i~~i~~G~~~t~~-l~-~g~v~~wG~~ 367 (393)
+...||.|+.|-.... .....+. .....|..++.-.+..++ -. ||.|+.|=..
T Consensus 241 ~~~~dg~v~iwd~~~~-----------~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 241 SCGEDRTVRIWSKENG-----------SLKQVIT--LPAISIWSVDCMSNGDIIVGSSDNLVRIFSQE 295 (313)
T ss_dssp EEETTSEEEEECTTTC-----------CEEEEEE--CSSSCEEEEEECTTSCEEEEETTSCEEEEESC
T ss_pred EEecCCEEEEEECCCC-----------ceeEEEe--ccCceEEEEEEccCCCEEEEeCCCcEEEEeCC
Confidence 6678889999865331 1111122 233467777766554333 34 9999999763
No 28
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=94.07 E-value=2.9 Score=36.74 Aligned_cols=269 Identities=10% Similarity=0.006 Sum_probs=131.2
Q ss_pred eccccceEEEEEEcCCCCCcCCCCCCCeeeeeeeccccCCceeEEEeCCCe-eEEEecCCcEEEEecCCCeeccCCCCCC
Q 016197 32 SSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAH-TLFLTETGCVYATGLNDFGQLGISENIG 110 (393)
Q Consensus 32 ~~~~~~~~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~I~~I~~G~~~-~~~lt~~G~v~~wG~n~~g~lg~~~~~~ 110 (393)
+.-+.++.+++.+......+.... .....+.... .....|..++...+. .++...+|.|.+|-...... .
T Consensus 15 ~~~s~dg~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~-------~ 85 (337)
T 1gxr_A 15 FHVTADGQMQPVPFPPDALIGPGI-PRHARQINTL-NHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGN-------K 85 (337)
T ss_dssp EEECSSSCEEECCCCTTSSSSTTC-CSEEEEEEEE-CCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTC-------C
T ss_pred EEECCCCCEEEeecCCCcEecccc-CCccccceec-cCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCc-------e
Confidence 344578888888865544433322 2222222222 234467777765443 33334488899996543110 0
Q ss_pred ceecceEeccCCCcEEEEEcCC--ceEEEEecCCcEEEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEec--CC
Q 016197 111 YSLEPLRISGLKKEVVQISTGY--HHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL--GF 186 (393)
Q Consensus 111 ~~~~p~~i~~~~~~i~~i~~g~--~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~--g~ 186 (393)
..............|..++... ...+.-..+|.|+.|-..... ......+. .....|..++. ..
T Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-----------~~~~~~~~-~~~~~i~~~~~~~~~ 153 (337)
T 1gxr_A 86 SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT-----------PRIKAELT-SSAPACYALAISPDS 153 (337)
T ss_dssp SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-------------EEEEEEE-CSSSCEEEEEECTTS
T ss_pred eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC-----------cceeeecc-cCCCceEEEEECCCC
Confidence 0011111112334677776543 345556778999999653210 00111111 11223554443 34
Q ss_pred ceEEEEeCCCcEEEEeCCCCCCCCCCCCCCccccccccccccceeeccccCccEEEEEeC--CceeEEEecCCcEEEEeC
Q 016197 187 EQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAG--FLHSACIDENGRVYIFGD 264 (393)
Q Consensus 187 ~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g--~~~~~~lt~~G~vy~wG~ 264 (393)
...++-..+|.|+.|-..... ....+.. ....+..+... ....++...+|.|+.|-.
T Consensus 154 ~~l~~~~~dg~v~~~d~~~~~--------------------~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~ 212 (337)
T 1gxr_A 154 KVCFSCCSDGNIAVWDLHNQT--------------------LVRQFQG-HTDGASCIDISNDGTKLWTGGLDNTVRSWDL 212 (337)
T ss_dssp SEEEEEETTSCEEEEETTTTE--------------------EEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CEEEEEeCCCcEEEEeCCCCc--------------------eeeeeec-ccCceEEEEECCCCCEEEEEecCCcEEEEEC
Confidence 456666788999999643210 0011111 12246666554 334555668899999965
Q ss_pred CCCCccccCCCCCcCCCccccCCCCcceEEee--CceeEEEEcCCCEEEEeCCCCCCCCCCCCCCccCceeecCCCCCCC
Q 016197 265 RAVDKMLFQEGNHARRPSLISKLPYSEEVVCG--GYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESP 342 (393)
Q Consensus 265 n~~gqlg~~~~~~~~~p~~i~~~~~v~~v~~g--~~~~~~lt~~g~v~~~G~n~~gqlG~g~~~~~~~p~~v~~~~~~~~ 342 (393)
.....+ ..+.....+..++.. ....++-..+|.|+.|-..... ...+. .....
T Consensus 213 ~~~~~~-----------~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~------------~~~~~--~~~~~ 267 (337)
T 1gxr_A 213 REGRQL-----------QQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD------------KYQLH--LHESC 267 (337)
T ss_dssp TTTEEE-----------EEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC------------EEEEC--CCSSC
T ss_pred CCCceE-----------eeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC------------eEEEc--CCccc
Confidence 432111 111122234444443 3344455677888888654321 11111 12346
Q ss_pred eEEEEeCCCc--eEEEE-CCcEEEEecC
Q 016197 343 VDQVSCGWKH--TAAIS-EGKILTWGWG 367 (393)
Q Consensus 343 i~~i~~G~~~--t~~l~-~g~v~~wG~~ 367 (393)
|..++..... .++-. +|.|..|-..
T Consensus 268 v~~~~~~~~~~~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 268 VLSLKFAYCGKWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eeEEEECCCCCEEEEecCCCcEEEEECC
Confidence 6666665433 33333 7888888763
No 29
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=93.62 E-value=3.3 Score=35.91 Aligned_cols=225 Identities=7% Similarity=-0.090 Sum_probs=115.3
Q ss_pred CCceeEEEeC-CCeeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEc--CCceEEEEecCCcEEE
Q 016197 70 KHSLKALACG-GAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIST--GYHHSSAITVDGELYM 146 (393)
Q Consensus 70 ~~~I~~I~~G-~~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~--g~~~~~~lt~~G~vy~ 146 (393)
...|..|+.- ..+.+.-..||.|.+|-.... .....+......|..++. .....+.-..+|.|..
T Consensus 18 ~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 85 (313)
T 3odt_A 18 DQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQ------------WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING 85 (313)
T ss_dssp SSCEEEEEEEETTEEEEEETTSEEEEEEESSS------------EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred CCCcEEEEecCCCEEEEEEcCCcEEEEECCCC------------EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence 3467777662 224455578899999964321 112222222345655543 4556666777888888
Q ss_pred EecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecCCceEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccccccccc
Q 016197 147 WGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSE 226 (393)
Q Consensus 147 ~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~ 226 (393)
|-...... ......+. .....|..++......+.-..+|.|..|-...
T Consensus 86 ~~~~~~~~----------~~~~~~~~-~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~~--------------------- 133 (313)
T 3odt_A 86 VPLFATSG----------EDPLYTLI-GHQGNVCSLSFQDGVVISGSWDKTAKVWKEGS--------------------- 133 (313)
T ss_dssp EETTCCTT----------SCC-CEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEETTE---------------------
T ss_pred EEeeecCC----------CCcccchh-hcccCEEEEEecCCEEEEEeCCCCEEEEcCCc---------------------
Confidence 86543110 00011111 12234666666666777778899999994100
Q ss_pred ccceeeccccCccEEEEEe---CCceeEEEecCCcEEEEeCCCCCccccCCCCCcCCCcccc--CCCCcceEEeeC-cee
Q 016197 227 YTPRLIKELEGVKVKIAAA---GFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLIS--KLPYSEEVVCGG-YHT 300 (393)
Q Consensus 227 ~~p~~i~~~~~~~i~~i~~---g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~--~~~~v~~v~~g~-~~~ 300 (393)
....+. .....+..+.. .....++...+|.|+.|-.... ...+. ....|..++... ...
T Consensus 134 -~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-------------~~~~~~~~~~~i~~~~~~~~~~~ 198 (313)
T 3odt_A 134 -LVYNLQ-AHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKV-------------IKTFSGIHNDVVRHLAVVDDGHF 198 (313)
T ss_dssp -EEEEEE-CCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEE-------------EEEECSSCSSCEEEEEEEETTEE
T ss_pred -EEEecc-cCCCceeEEEEccCCCCEEEEEECCCCEEEEecCce-------------EEEEeccCcccEEEEEEcCCCeE
Confidence 000111 11223444433 4556667778899999951110 00111 112344444432 235
Q ss_pred EEEEcCCCEEEEeCCCCCCCCCCCCCCccCceeecCCCCCCCeEEEEeCCCceEE-EE-CCcEEEEec
Q 016197 301 CVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAA-IS-EGKILTWGW 366 (393)
Q Consensus 301 ~~lt~~g~v~~~G~n~~gqlG~g~~~~~~~p~~v~~~~~~~~i~~i~~G~~~t~~-l~-~g~v~~wG~ 366 (393)
++...+|.|+.|-...... ...+. .....|..++.-....++ -. ||.|+.|=.
T Consensus 199 ~~~~~dg~i~i~d~~~~~~-----------~~~~~--~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~ 253 (313)
T 3odt_A 199 ISCSNDGLIKLVDMHTGDV-----------LRTYE--GHESFVYCIKLLPNGDIVSCGEDRTVRIWSK 253 (313)
T ss_dssp EEEETTSEEEEEETTTCCE-----------EEEEE--CCSSCEEEEEECTTSCEEEEETTSEEEEECT
T ss_pred EEccCCCeEEEEECCchhh-----------hhhhh--cCCceEEEEEEecCCCEEEEecCCEEEEEEC
Confidence 5667888999997643211 11111 123356666665443333 33 788888865
No 30
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=93.53 E-value=3.7 Score=36.17 Aligned_cols=111 Identities=5% Similarity=0.038 Sum_probs=52.7
Q ss_pred cEEEEEeCCc--eeEEEecCCcEEEEeCCCCCccccCCCCCcCCCccccCCCCcceEEeeC-ceeEEEEcCCCEEEEeCC
Q 016197 239 KVKIAAAGFL--HSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGG-YHTCVLTSGGELYTWGSN 315 (393)
Q Consensus 239 ~i~~i~~g~~--~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~v~~v~~g~-~~~~~lt~~g~v~~~G~n 315 (393)
.|..++...+ ..+.-..||.|..|-.....++ ..+.....|..+.... .+.++...|+.|..|-..
T Consensus 217 ~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~-----------~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~ 285 (340)
T 4aow_A 217 YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL-----------YTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLE 285 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE-----------EEEECSSCEEEEEECSSSSEEEEEETTEEEEEETT
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEeccCcee-----------eeecCCceEEeeecCCCCceeeccCCCEEEEEECC
Confidence 4556655433 3344467888888855432211 1111222344444433 345566678888888654
Q ss_pred CCCCCCCCCCCCccCce-eecCCCCCCCeEEEEeCCCceEEE--E-CCcEEEEe
Q 016197 316 ENGCLGIGSIDVLHSPE-RVQGPFSESPVDQVSCGWKHTAAI--S-EGKILTWG 365 (393)
Q Consensus 316 ~~gqlG~g~~~~~~~p~-~v~~~~~~~~i~~i~~G~~~t~~l--~-~g~v~~wG 365 (393)
..-.+.. ...+. ..........|..++...+...++ . ||.|+.|=
T Consensus 286 ~~~~~~~-----~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~ 334 (340)
T 4aow_A 286 GKIIVDE-----LKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334 (340)
T ss_dssp TTEEEEE-----ECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCeEEEe-----ccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 3111000 00000 000011234677777655433333 3 88899884
No 31
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=92.48 E-value=5.4 Score=35.35 Aligned_cols=206 Identities=9% Similarity=0.009 Sum_probs=105.7
Q ss_pred CCceeEEEeC------CCeeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcCCc------eEEE
Q 016197 70 KHSLKALACG------GAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYH------HSSA 137 (393)
Q Consensus 70 ~~~I~~I~~G------~~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g~~------~~~~ 137 (393)
...|..|+.. ....++-..++.|.+|-......+ ..............|..++.... ..+.
T Consensus 18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 90 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI-------RLLQSYVDADADENFYTCAWTYDSNTSHPLLAV 90 (366)
T ss_dssp CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE-------EEEEEEECSCTTCCEEEEEEEECTTTCCEEEEE
T ss_pred CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE-------EeeeeccccCCCCcEEEEEeccCCCCCCCEEEE
Confidence 3568888876 344666677889999965432110 00111111112235666665333 5666
Q ss_pred EecCCcEEEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecC---CceEEEEeCCCcEEEEeCCCCCCCCCCCC
Q 016197 138 ITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG---FEQSVAVTGGGKVLSWGAGGSGRLGHGQE 214 (393)
Q Consensus 138 lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g---~~~s~~lt~~G~v~~~G~n~~gqlg~~~~ 214 (393)
-..+|.|..|-.... .....+. .....|..+... ....+.-..+|.|+.|-.....
T Consensus 91 ~~~dg~i~v~d~~~~-------------~~~~~~~-~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------- 149 (366)
T 3k26_A 91 AGSRGIIRIINPITM-------------QCIKHYV-GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT------- 149 (366)
T ss_dssp EETTCEEEEECTTTC-------------CEEEEEE-SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE-------
T ss_pred ecCCCEEEEEEchhc-------------eEeeeec-CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe-------
Confidence 778899999954321 1111121 122346666653 3556666789999999653210
Q ss_pred CCccccccccccccceeec--cccCccEEEEEeC--CceeEEEecCCcEEEEeCCCCCccccC--------C-CCC----
Q 016197 215 SSILGFLRSTSEYTPRLIK--ELEGVKVKIAAAG--FLHSACIDENGRVYIFGDRAVDKMLFQ--------E-GNH---- 277 (393)
Q Consensus 215 ~~~~~~~~~~~~~~p~~i~--~~~~~~i~~i~~g--~~~~~~lt~~G~vy~wG~n~~gqlg~~--------~-~~~---- 277 (393)
....+. ......|..++.. ....+....+|.|+.|-......+..- + ...
T Consensus 150 -------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (366)
T 3k26_A 150 -------------LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFIS 216 (366)
T ss_dssp -------------EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCC
T ss_pred -------------EEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccc
Confidence 001110 1122356666654 344555667899999965432111000 0 000
Q ss_pred --cCCCccc---cCCCCcceEEeeCceeEEEEcCCCEEEEeCCC
Q 016197 278 --ARRPSLI---SKLPYSEEVVCGGYHTCVLTSGGELYTWGSNE 316 (393)
Q Consensus 278 --~~~p~~i---~~~~~v~~v~~g~~~~~~lt~~g~v~~~G~n~ 316 (393)
...|... .....|..++......+....+|.|..|-...
T Consensus 217 ~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~ 260 (366)
T 3k26_A 217 QKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGK 260 (366)
T ss_dssp EEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESS
T ss_pred eeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCC
Confidence 0000000 01223666666666777777899999998654
No 32
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=92.20 E-value=7.4 Score=36.22 Aligned_cols=239 Identities=8% Similarity=-0.053 Sum_probs=119.9
Q ss_pred CceeEEEeC----CCeeEEEecCCcEEEEecCCCeeccCCCCCCc--------eec---ceEeccCCCcEEEEEcCCceE
Q 016197 71 HSLKALACG----GAHTLFLTETGCVYATGLNDFGQLGISENIGY--------SLE---PLRISGLKKEVVQISTGYHHS 135 (393)
Q Consensus 71 ~~I~~I~~G----~~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~--------~~~---p~~i~~~~~~i~~i~~g~~~~ 135 (393)
..|..++.. ..+.+.-..||.|.+|-............... ... ..........+..++......
T Consensus 204 ~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l 283 (464)
T 3v7d_B 204 STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIV 283 (464)
T ss_dssp SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEE
T ss_pred CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEE
Confidence 456666553 24455667899999997654322111000000 000 011222233677777777778
Q ss_pred EEEecCCcEEEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEec--CCceEEEEeCCCcEEEEeCCCCCCCCCCC
Q 016197 136 SAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL--GFEQSVAVTGGGKVLSWGAGGSGRLGHGQ 213 (393)
Q Consensus 136 ~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~--g~~~s~~lt~~G~v~~~G~n~~gqlg~~~ 213 (393)
+.-..+|.|+.|-..... ....+.. ....|..++. .....+.-..+|.|..|-.....
T Consensus 284 ~~~~~d~~i~vwd~~~~~-------------~~~~~~~-~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~------ 343 (464)
T 3v7d_B 284 VSGSYDNTLIVWDVAQMK-------------CLYILSG-HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE------ 343 (464)
T ss_dssp EEEETTSCEEEEETTTTE-------------EEEEECC-CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE------
T ss_pred EEEeCCCeEEEEECCCCc-------------EEEEecC-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc------
Confidence 888889999999653210 0011111 1223444443 33456666788999998543210
Q ss_pred CCCccccccccccccceeeccccCccEEEEEeCCceeEEEecCCcEEEEeCCCCCccccCCCCCcCCCccccCCCCcceE
Q 016197 214 ESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEV 293 (393)
Q Consensus 214 ~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~v~~v 293 (393)
....+. .....|..+.......+....||.|..|-.....+.-. ........+..+
T Consensus 344 --------------~~~~~~-~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~---------~~~~~~~~~~~~ 399 (464)
T 3v7d_B 344 --------------LMYTLQ-GHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFS---------YHHTNLSAITTF 399 (464)
T ss_dssp --------------EEEEEC-CCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEE---------EECTTCCCEEEE
T ss_pred --------------EEEEEe-CCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeee---------ecCCCCccEEEE
Confidence 001111 11235777777777788888999999996554211100 000111123333
Q ss_pred EeeCceeEEEEcCCCEEEEeCCCCCCCCCCCCCCccCceeecCCCCCCCeEEEEeCCCceEEEE--CCcEEEEec
Q 016197 294 VCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAIS--EGKILTWGW 366 (393)
Q Consensus 294 ~~g~~~~~~lt~~g~v~~~G~n~~gqlG~g~~~~~~~p~~v~~~~~~~~i~~i~~G~~~t~~l~--~g~v~~wG~ 366 (393)
.... ..++...+|.|..|-.... + +...........|..++.-....++-. +|.++.|-.
T Consensus 400 ~~~~-~~l~~~~dg~i~iwd~~~g-~-----------~~~~~~~~~~~~v~~v~~~~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 400 YVSD-NILVSGSENQFNIYNLRSG-K-----------LVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp EECS-SEEEEEETTEEEEEETTTC-C-----------EEESCTTTTCSEEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred EeCC-CEEEEecCCeEEEEECCCC-c-----------EEehhhccCCCcEEEEEecCCEEEEEEEeCCeEEEEEe
Confidence 3333 3444555888888875431 1 111000112346777766544444433 677777643
No 33
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=91.04 E-value=8.6 Score=34.68 Aligned_cols=110 Identities=15% Similarity=0.134 Sum_probs=57.7
Q ss_pred EeeeccccceEEEEEEcCCCCCcCCCCCCCeeeeeeeccccCCceeEEEeCCC---------eeEEEecCCcEEEEecCC
Q 016197 29 RWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGA---------HTLFLTETGCVYATGLND 99 (393)
Q Consensus 29 ~~~~~~~~~~~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~I~~I~~G~~---------~~~~lt~~G~v~~wG~n~ 99 (393)
.++++.+.++.|++|-...... .........+. .....|..++...+ +.+....+|.|++|-...
T Consensus 27 ~~l~s~~~dg~i~iw~~~~~~~-----~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~ 100 (397)
T 1sq9_A 27 SFTVSCSGDGYLKVWDNKLLDN-----ENPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITR 100 (397)
T ss_dssp SEEEEEETTSEEEEEESBCCTT-----CCGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEE
T ss_pred CeEEEEcCCCEEEEEECCCccc-----ccCCCcceEEe-cCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccC
Confidence 5667777888999997543110 00011111121 23345777766543 444456789999996432
Q ss_pred CeeccCCCCCCceecceEeccC-----CCcEEEEEcC------Cce-EEEEecCCcEEEEecCC
Q 016197 100 FGQLGISENIGYSLEPLRISGL-----KKEVVQISTG------YHH-SSAITVDGELYMWGKNS 151 (393)
Q Consensus 100 ~g~lg~~~~~~~~~~p~~i~~~-----~~~i~~i~~g------~~~-~~~lt~~G~vy~~G~n~ 151 (393)
.. .........+... ...|..++.. ... .+.-..+|.|+.|-...
T Consensus 101 ~~-------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 157 (397)
T 1sq9_A 101 ED-------ETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP 157 (397)
T ss_dssp CT-------TTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred Cc-------ccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCc
Confidence 10 0000112233333 2467666654 444 55667889999997643
No 34
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=90.57 E-value=8.9 Score=34.09 Aligned_cols=241 Identities=10% Similarity=0.036 Sum_probs=120.7
Q ss_pred CceeEEEeCCCe--eEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcC----CceEEEEecCCcE
Q 016197 71 HSLKALACGGAH--TLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG----YHHSSAITVDGEL 144 (393)
Q Consensus 71 ~~I~~I~~G~~~--~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g----~~~~~~lt~~G~v 144 (393)
..|..|+...+. .+.-..||.|.+|-... ........+..-...|..++.. ....+.-..+|.|
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~----------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 12 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEG----------ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp CCEEEEEECSSSSEEEEEETTSCEEEEEEET----------TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEecCC----------CcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 457777766543 33335789999995431 0111122233334478888764 4566777888999
Q ss_pred EEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecC----CceEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccc
Q 016197 145 YMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG----FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF 220 (393)
Q Consensus 145 y~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g----~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~ 220 (393)
..|-.... ...+..........|..++.. ....+....+|.|..|-......
T Consensus 82 ~iwd~~~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~------------ 137 (379)
T 3jrp_A 82 LIWKEENG------------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT------------ 137 (379)
T ss_dssp EEEEEETT------------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC------------
T ss_pred EEEEcCCC------------ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc------------
Confidence 99965321 000111111122346666554 34566668899999996543211
Q ss_pred ccccccccceeeccccCccEEEEEeC---------------CceeEEEecCCcEEEEeCCCCCccccCCCCCcCCCcccc
Q 016197 221 LRSTSEYTPRLIKELEGVKVKIAAAG---------------FLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLIS 285 (393)
Q Consensus 221 ~~~~~~~~p~~i~~~~~~~i~~i~~g---------------~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~ 285 (393)
..+..+. .....|..++-. ....++-..+|.|+.|-....... ......+.
T Consensus 138 ------~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------~~~~~~~~ 203 (379)
T 3jrp_A 138 ------TSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-------YVLESTLE 203 (379)
T ss_dssp ------CCEEEEE-CCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTE-------EEEEEEEC
T ss_pred ------eeeEEec-CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc-------eeeEEEEe
Confidence 0001111 111234444443 345566678899999854321100 00001111
Q ss_pred C-CCCcceEEeeC-----ceeEEEEcCCCEEEEeCCCCCCCCCCCCCCccCceeecCCCCCCCeEEEEeCCCc--eEEEE
Q 016197 286 K-LPYSEEVVCGG-----YHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKH--TAAIS 357 (393)
Q Consensus 286 ~-~~~v~~v~~g~-----~~~~~lt~~g~v~~~G~n~~gqlG~g~~~~~~~p~~v~~~~~~~~i~~i~~G~~~--t~~l~ 357 (393)
. ...|..++... ...+....||.|..|-...... ..........-....|..++..... .++-.
T Consensus 204 ~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~--------~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 275 (379)
T 3jrp_A 204 GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG--------PWKKTLLKEEKFPDVLWRASWSLSGNVLALSG 275 (379)
T ss_dssp CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS--------CCEEEESSSSCCSSCEEEEEECSSSCCEEEEE
T ss_pred cccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCc--------cceeeeeccccCCCcEEEEEEcCCCCEEEEec
Confidence 1 22366666553 3445566889999997644210 0000111111123356666665433 33334
Q ss_pred -CCcEEEEecC
Q 016197 358 -EGKILTWGWG 367 (393)
Q Consensus 358 -~g~v~~wG~~ 367 (393)
||.|+.|=..
T Consensus 276 ~dg~i~iw~~~ 286 (379)
T 3jrp_A 276 GDNKVTLWKEN 286 (379)
T ss_dssp SSSSEEEEEEE
T ss_pred CCCcEEEEeCC
Confidence 8999999653
No 35
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=89.91 E-value=12 Score=34.58 Aligned_cols=248 Identities=9% Similarity=0.023 Sum_probs=115.0
Q ss_pred EeeeccccceEEEEEEcCCCCCcCCCCCCCeeeeeeeccccCCceeEEEeCCC---eeEEEecCCcEEEEecCCCeeccC
Q 016197 29 RWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGA---HTLFLTETGCVYATGLNDFGQLGI 105 (393)
Q Consensus 29 ~~~~~~~~~~~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~I~~I~~G~~---~~~~lt~~G~v~~wG~n~~g~lg~ 105 (393)
.++++.+.++.|++|-......... ......|..........|..|+.... +.+.-..+|.|.+|-.......
T Consensus 142 ~~lat~~~dg~V~vwd~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-- 217 (430)
T 2xyi_A 142 CVIATKTPSSDVLVFDYTKHPSKPE--PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKE-- 217 (430)
T ss_dssp EEEEEECSSSCEEEEEGGGSCSSCC--TTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBG--
T ss_pred cEEEEECCCCcEEEEECCCcccccC--ccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCC--
Confidence 3455555667777776543211100 00011121111122334666665433 4455567899999976542110
Q ss_pred CCCCCceec-ceEeccCCCcEEEEEcC---CceEEEEecCCcEEEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEE
Q 016197 106 SENIGYSLE-PLRISGLKKEVVQISTG---YHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQ 181 (393)
Q Consensus 106 ~~~~~~~~~-p~~i~~~~~~i~~i~~g---~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~ 181 (393)
..... ...+......|..|+.. ....+....+|.|+.|-...... ......+. .....|..
T Consensus 218 ----~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~----------~~~~~~~~-~~~~~v~~ 282 (430)
T 2xyi_A 218 ----HRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT----------SKPSHTVD-AHTAEVNC 282 (430)
T ss_dssp ----GGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS----------SSCSEEEE-CCSSCEEE
T ss_pred ----CceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC----------CcceeEee-cCCCCeEE
Confidence 11111 12222233467777763 44555667899999997653210 00111111 11223555
Q ss_pred EecCC--c-eEEEEeCCCcEEEEeCCCCCCCCCCCCCCccccccccccccceeeccccCccEEEEEeCCc---eeEEEec
Q 016197 182 AALGF--E-QSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFL---HSACIDE 255 (393)
Q Consensus 182 i~~g~--~-~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~---~~~~lt~ 255 (393)
|+... . ..+.-..+|.|..|-.....+ ....+. .....|..+.-..+ ..+.-..
T Consensus 283 i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~-------------------~~~~~~-~h~~~v~~i~~sp~~~~~l~s~~~ 342 (430)
T 2xyi_A 283 LSFNPYSEFILATGSADKTVALWDLRNLKL-------------------KLHSFE-SHKDEIFQVQWSPHNETILASSGT 342 (430)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEETTCTTS-------------------CSEEEE-CCSSCEEEEEECSSCTTEEEEEET
T ss_pred EEeCCCCCCEEEEEeCCCeEEEEeCCCCCC-------------------CeEEee-cCCCCEEEEEECCCCCCEEEEEeC
Confidence 55432 2 344456789999997543211 001111 11225666665432 2445567
Q ss_pred CCcEEEEeCCCCCccccCCCCCcCCCccccCC----CCcceEEeeCc---eeEEEEcCCCEEEEeCC
Q 016197 256 NGRVYIFGDRAVDKMLFQEGNHARRPSLISKL----PYSEEVVCGGY---HTCVLTSGGELYTWGSN 315 (393)
Q Consensus 256 ~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~----~~v~~v~~g~~---~~~~lt~~g~v~~~G~n 315 (393)
+|.|..|-....+............|..+... ..|..++.... ..+....||.|..|-..
T Consensus 343 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 343 DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp TSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred CCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 88999986544221100000000112222211 13666665443 34456678888888754
No 36
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=89.43 E-value=10 Score=33.18 Aligned_cols=234 Identities=10% Similarity=-0.046 Sum_probs=115.7
Q ss_pred eeeccccceEEEEEEcCCCCCcCCCCCCCeeeeeeeccccCCceeEEEeC--CC-eeEEEecCCcEEEEec-CCCeeccC
Q 016197 30 WISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACG--GA-HTLFLTETGCVYATGL-NDFGQLGI 105 (393)
Q Consensus 30 ~~~~~~~~~~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~I~~I~~G--~~-~~~~lt~~G~v~~wG~-n~~g~lg~ 105 (393)
++++.+.++.|++|=.... .....+..+. .....|..++.. .. +.+.-..+|.|++|-. ...
T Consensus 25 ~l~~~~~d~~v~iw~~~~~--------~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~----- 90 (342)
T 1yfq_A 25 LLLITSWDGSLTVYKFDIQ--------AKNVDLLQSL-RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP----- 90 (342)
T ss_dssp EEEEEETTSEEEEEEEETT--------TTEEEEEEEE-ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS-----
T ss_pred EEEEEcCCCeEEEEEeCCC--------Cccccceeee-ecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCC-----
Confidence 3444456777777754321 1111122222 233457666664 33 4555678899999954 221
Q ss_pred CCCCCceecceEecc--CCCcEEEEEcC-CceEEEEecCCcEEEEecCCCCCCCCCCCCCcccccCe-EeccCCCceEEE
Q 016197 106 SENIGYSLEPLRISG--LKKEVVQISTG-YHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPT-KVECLSGIFTKQ 181 (393)
Q Consensus 106 ~~~~~~~~~p~~i~~--~~~~i~~i~~g-~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~~-~~~~~~~~~i~~ 181 (393)
....+.. ....|..++.. ....+....+|.|+.|-...... ........+. .+. ....|..
T Consensus 91 --------~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~--~~~~v~~ 155 (342)
T 1yfq_A 91 --------SFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD-----GVIAVKNLNSNNTK--VKNKIFT 155 (342)
T ss_dssp --------SEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTT-----BCEEEEESCSSSSS--SCCCEEE
T ss_pred --------ceEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEccccccc-----ccccccCCeeeEEe--eCCceEE
Confidence 1123333 34466666543 56677778899999996432100 0000000000 011 1234777
Q ss_pred EecCCceEEEEeCCCcEEEEeCCCCCCCCCCCCCCccccccccccccceeeccccCccEEEEEeC---CceeEEEecCCc
Q 016197 182 AALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAG---FLHSACIDENGR 258 (393)
Q Consensus 182 i~~g~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g---~~~~~~lt~~G~ 258 (393)
++......++.+.+|.|+.|-....+. .............+..++.. ....++-..+|.
T Consensus 156 ~~~~~~~l~~~~~d~~i~i~d~~~~~~------------------~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~ 217 (342)
T 1yfq_A 156 MDTNSSRLIVGMNNSQVQWFRLPLCED------------------DNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR 217 (342)
T ss_dssp EEECSSEEEEEESTTEEEEEESSCCTT------------------CCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE
T ss_pred EEecCCcEEEEeCCCeEEEEECCcccc------------------ccceeeecCCCCceeEEEECCCCCCEEEEEecCCc
Confidence 777777777778899999997643100 00011111112245555554 345566678888
Q ss_pred EEEEeCCCCCccccCCCCCcCCCccccC----------CCCcceEEeeC--ceeEEEEcCCCEEEEeCC
Q 016197 259 VYIFGDRAVDKMLFQEGNHARRPSLISK----------LPYSEEVVCGG--YHTCVLTSGGELYTWGSN 315 (393)
Q Consensus 259 vy~wG~n~~gqlg~~~~~~~~~p~~i~~----------~~~v~~v~~g~--~~~~~lt~~g~v~~~G~n 315 (393)
+..|-....+.- ........+.. ...|..++... ...+.-..||.|+.|-..
T Consensus 218 i~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~ 281 (342)
T 1yfq_A 218 VAVEFFDDQGDD-----YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ 281 (342)
T ss_dssp EEEEECCTTCCS-----TTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred EEEEEEcCCCcc-----cccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCc
Confidence 888865443100 00000001111 11455555533 344556678889988754
No 37
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=89.43 E-value=16 Score=35.19 Aligned_cols=188 Identities=10% Similarity=0.025 Sum_probs=98.0
Q ss_pred CceeEEEeCCC---eeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCC---cEEEEEcCCc---eEEEEecC
Q 016197 71 HSLKALACGGA---HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKK---EVVQISTGYH---HSSAITVD 141 (393)
Q Consensus 71 ~~I~~I~~G~~---~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~---~i~~i~~g~~---~~~~lt~~ 141 (393)
..|..++...+ ..+.-..+|.|.+|-.... .....+..... .|..++...+ ..+....+
T Consensus 161 ~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 228 (615)
T 1pgu_A 161 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF------------KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD 228 (615)
T ss_dssp SCEEEEEECSSSSCEEEEEETTTEEEEEETTTB------------EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETT
T ss_pred ccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc------------ceeeeecccCCCCceEEEEEECCCCCCEEEEEeCC
Confidence 45666666555 3455577888999853221 11122222333 6777776533 55666789
Q ss_pred CcEEEEecCCCCCCCCCCCCCcccccCeEecc---CCCceEEEEec-CCceEEEEeCCCcEEEEeCCCCCCCCCCCCCCc
Q 016197 142 GELYMWGKNSNGQLGLGKKAAKVIPIPTKVEC---LSGIFTKQAAL-GFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSI 217 (393)
Q Consensus 142 G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~---~~~~~i~~i~~-g~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~ 217 (393)
|.|+.|-..... ....+.. .....|..+.. .....+....+|.|..|-......+
T Consensus 229 g~i~vwd~~~~~-------------~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~-------- 287 (615)
T 1pgu_A 229 RKISCFDGKSGE-------------FLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCV-------- 287 (615)
T ss_dssp CCEEEEETTTCC-------------EEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEE--------
T ss_pred CeEEEEECCCCC-------------EeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEE--------
Confidence 999999653211 1111100 11223555544 3445566677899999965321100
Q ss_pred cccccccccccceeeccc---cCccEEEEEe-CCceeEEEecCCcEEEEeCCCCCccccCCCCCcCCCccccCCCCcceE
Q 016197 218 LGFLRSTSEYTPRLIKEL---EGVKVKIAAA-GFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEV 293 (393)
Q Consensus 218 ~~~~~~~~~~~p~~i~~~---~~~~i~~i~~-g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~v~~v 293 (393)
..+... ....+..+.. .....++...+|.|+.|-......+ .........|..+
T Consensus 288 ------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~----------~~~~~~~~~v~~~ 345 (615)
T 1pgu_A 288 ------------QKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVL----------KTISGHNKGITAL 345 (615)
T ss_dssp ------------EEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEE----------EEECCCSSCEEEE
T ss_pred ------------EEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEE----------EEEeCCCCCEEEE
Confidence 000000 0012222222 4556677788999999964431100 0001112246777
Q ss_pred EeeCceeEEEEcCCCEEEEeCC
Q 016197 294 VCGGYHTCVLTSGGELYTWGSN 315 (393)
Q Consensus 294 ~~g~~~~~~lt~~g~v~~~G~n 315 (393)
+. .. .+.-..||.|..|-..
T Consensus 346 ~~-~~-l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 346 TV-NP-LISGSYDGRIMEWSSS 365 (615)
T ss_dssp ET-TT-TEEEETTSCEEETTTT
T ss_pred Ee-cC-cEEECCCCeEEEEEch
Confidence 77 66 6667788999988654
No 38
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=89.07 E-value=11 Score=33.10 Aligned_cols=236 Identities=12% Similarity=0.020 Sum_probs=118.5
Q ss_pred CCceeEEEeCCCe-eEEEec-----CCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcCC-----ceEEEE
Q 016197 70 KHSLKALACGGAH-TLFLTE-----TGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY-----HHSSAI 138 (393)
Q Consensus 70 ~~~I~~I~~G~~~-~~~lt~-----~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g~-----~~~~~l 138 (393)
...|..|+...+. .++.+. ||.|.+|-.... . ..+.....-...|..++... ...+.-
T Consensus 18 ~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~----------~-~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~ 86 (357)
T 3i2n_A 18 NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHG----------D-LKLLREIEKAKPIKCGTFGATSLQQRYLATG 86 (357)
T ss_dssp SSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSS----------S-EEEEEEEEESSCEEEEECTTCCTTTCCEEEE
T ss_pred CCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCC----------c-ccceeeecccCcEEEEEEcCCCCCCceEEEe
Confidence 3568888876644 333333 888999964321 1 11111112244788887754 445666
Q ss_pred ecCCcEEEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEe--------cCCceEEEEeCCCcEEEEeCCCCCCCC
Q 016197 139 TVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAA--------LGFEQSVAVTGGGKVLSWGAGGSGRLG 210 (393)
Q Consensus 139 t~~G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~--------~g~~~s~~lt~~G~v~~~G~n~~gqlg 210 (393)
..+|.|..|-..... .....+.. ....|..+. ......+.-..+|.|..|-......
T Consensus 87 ~~dg~i~iwd~~~~~------------~~~~~~~~-~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~-- 151 (357)
T 3i2n_A 87 DFGGNLHIWNLEAPE------------MPVYSVKG-HKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD-- 151 (357)
T ss_dssp ETTSCEEEECTTSCS------------SCSEEECC-CSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS--
T ss_pred cCCCeEEEEeCCCCC------------ccEEEEEe-cccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC--
Confidence 778999999654321 00111111 122355552 2334556667889999996533210
Q ss_pred CCCCCCccccccccccccceeecc---ccCccEEEEE------eCCceeEEEecCCcEEEEeCCCCCccccCCCCCcCCC
Q 016197 211 HGQESSILGFLRSTSEYTPRLIKE---LEGVKVKIAA------AGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRP 281 (393)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~p~~i~~---~~~~~i~~i~------~g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p 281 (393)
....+.. .....+..+. ......++-..+|.|+.|-...... .
T Consensus 152 -----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----------~ 203 (357)
T 3i2n_A 152 -----------------PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL-----------R 203 (357)
T ss_dssp -----------------CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE-----------E
T ss_pred -----------------cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce-----------e
Confidence 0011111 1112455554 3344555667789999996543111 0
Q ss_pred ccccCCCCcceEEee-----CceeEEEEcCCCEEEEeCCCCCCCCCCCCCCccCceeecCCCCCCCeEEEEeCCCce--E
Q 016197 282 SLISKLPYSEEVVCG-----GYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHT--A 354 (393)
Q Consensus 282 ~~i~~~~~v~~v~~g-----~~~~~~lt~~g~v~~~G~n~~gqlG~g~~~~~~~p~~v~~~~~~~~i~~i~~G~~~t--~ 354 (393)
........|..+... ....++-..+|.|+.|-......+ . ........ .....|..++.-.... +
T Consensus 204 ~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----~-~~~~~~~~--~~~~~v~~~~~~~~~~~~l 275 (357)
T 3i2n_A 204 WETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT-----K-GFASVSEK--AHKSTVWQVRHLPQNRELF 275 (357)
T ss_dssp EEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT-----T-EEEEEEEE--CCSSCEEEEEEETTEEEEE
T ss_pred eecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc-----c-ceeeeccC--CCcCCEEEEEECCCCCcEE
Confidence 111112245666654 245555677888888875431110 0 00000111 1234677777665433 3
Q ss_pred EE-E-CCcEEEEecC
Q 016197 355 AI-S-EGKILTWGWG 367 (393)
Q Consensus 355 ~l-~-~g~v~~wG~~ 367 (393)
+. . ||.|..|=..
T Consensus 276 ~~~~~dg~i~iwd~~ 290 (357)
T 3i2n_A 276 LTAGGAGGLHLWKYE 290 (357)
T ss_dssp EEEETTSEEEEEEEE
T ss_pred EEEeCCCcEEEeecC
Confidence 33 3 8999999764
No 39
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=88.92 E-value=12 Score=33.02 Aligned_cols=244 Identities=11% Similarity=0.010 Sum_probs=119.7
Q ss_pred CCceeEEEeCCC-----eeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEE--------cCCceEE
Q 016197 70 KHSLKALACGGA-----HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIS--------TGYHHSS 136 (393)
Q Consensus 70 ~~~I~~I~~G~~-----~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~--------~g~~~~~ 136 (393)
...|..++.... ..+.-..+|.|.+|-..... .....+......|..+. ......+
T Consensus 65 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~ 133 (357)
T 3i2n_A 65 AKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE-----------MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIV 133 (357)
T ss_dssp SSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS-----------SCSEEECCCSSCEEEEEEESGGGCC-CCCEEE
T ss_pred cCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC-----------ccEEEEEecccceEEEeeccccccCCCccEEE
Confidence 346788887654 34455778999999654211 01122233344676663 2344566
Q ss_pred EEecCCcEEEEecCCCCCCCCCCCCCcccccCeEeccCC---CceEEEEe------cCCceEEEEeCCCcEEEEeCCCCC
Q 016197 137 AITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLS---GIFTKQAA------LGFEQSVAVTGGGKVLSWGAGGSG 207 (393)
Q Consensus 137 ~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~---~~~i~~i~------~g~~~s~~lt~~G~v~~~G~n~~g 207 (393)
.-..+|.|..|-..... .....+.... ...+..+. ......++-..+|.|+.|-.....
T Consensus 134 ~~~~d~~i~vwd~~~~~------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 201 (357)
T 3i2n_A 134 TGSRDGTVKVWDPRQKD------------DPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA 201 (357)
T ss_dssp EEETTSCEEEECTTSCS------------SCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE
T ss_pred EEeCCCeEEEEeCCCCC------------CcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc
Confidence 66788999999654321 0111111111 22355554 344455666778999999653210
Q ss_pred CCCCCCCCCccccccccccccceeeccccCccEEEEEeC-----CceeEEEecCCcEEEEeCCCCCccccCCCCCcCCCc
Q 016197 208 RLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAG-----FLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPS 282 (393)
Q Consensus 208 qlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g-----~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~ 282 (393)
+..... ....|..+.-. ....++-..+|.|+.|-......+ ......
T Consensus 202 ---------------------~~~~~~-~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------~~~~~~ 253 (357)
T 3i2n_A 202 ---------------------LRWETN-IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT------KGFASV 253 (357)
T ss_dssp ---------------------EEEEEE-CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT------TEEEEE
T ss_pred ---------------------eeeecC-CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc------cceeee
Confidence 011111 11245555554 345566678899988854321100 000000
Q ss_pred cc-cCCCCcceEEeeCc---eeEEEEcCCCEEEEeCCCCCCCCCCCCCC--------ccCceeecCCCCCCCeEEEEeCC
Q 016197 283 LI-SKLPYSEEVVCGGY---HTCVLTSGGELYTWGSNENGCLGIGSIDV--------LHSPERVQGPFSESPVDQVSCGW 350 (393)
Q Consensus 283 ~i-~~~~~v~~v~~g~~---~~~~lt~~g~v~~~G~n~~gqlG~g~~~~--------~~~p~~v~~~~~~~~i~~i~~G~ 350 (393)
.+ .....|..++...+ ..+.-..||.|..|-.......-..+... ......+. .....|..++...
T Consensus 254 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~ 331 (357)
T 3i2n_A 254 SEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVT--LSTQPISSLDWSP 331 (357)
T ss_dssp EEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEE--CCSSCEEEEEECS
T ss_pred ccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccc--cCCCCeeEEEEcC
Confidence 00 12234666766554 34445688999999865422111000000 00011111 1234677776654
Q ss_pred Cce-EE--EE-CCcEEEEec
Q 016197 351 KHT-AA--IS-EGKILTWGW 366 (393)
Q Consensus 351 ~~t-~~--l~-~g~v~~wG~ 366 (393)
... ++ -. ||.|..|=.
T Consensus 332 ~~~~l~~s~~~d~~i~iw~~ 351 (357)
T 3i2n_A 332 DKRGLCVCSSFDQTVRVLIV 351 (357)
T ss_dssp SSTTEEEEEETTSEEEEEEE
T ss_pred CCCeEEEEecCCCcEEEEEC
Confidence 432 33 34 889998865
No 40
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=88.70 E-value=13 Score=33.38 Aligned_cols=222 Identities=10% Similarity=-0.047 Sum_probs=113.3
Q ss_pred EeCCCeeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcC-----CceEEEEecCCcEEEEecCC
Q 016197 77 ACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG-----YHHSSAITVDGELYMWGKNS 151 (393)
Q Consensus 77 ~~G~~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g-----~~~~~~lt~~G~vy~~G~n~ 151 (393)
+...++.+++|+.|++|..-..+-...+.............+. -.++|+.+... ....+++|++|.+.-.-...
T Consensus 50 ~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~ 128 (327)
T 3uc1_A 50 CSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTD 128 (327)
T ss_dssp EETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGG
T ss_pred eCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHH
Confidence 4456668889999999988654332221111000000111111 23478887654 35688999999888765433
Q ss_pred CCCCCCCCCCCcccccCeEeccCCCceEEE--EecCCceEEEEeCCCcEEEEeCC--CCCCCCCCCCCCccccccccccc
Q 016197 152 NGQLGLGKKAAKVIPIPTKVECLSGIFTKQ--AALGFEQSVAVTGGGKVLSWGAG--GSGRLGHGQESSILGFLRSTSEY 227 (393)
Q Consensus 152 ~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~--i~~g~~~s~~lt~~G~v~~~G~n--~~gqlg~~~~~~~~~~~~~~~~~ 227 (393)
+-.- . ..-...+...++..++. +..+..+.+++|++|++|.+-.. .--..++....
T Consensus 129 ~~~~------~--r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~G------------ 188 (327)
T 3uc1_A 129 FDSN------R--SGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSG------------ 188 (327)
T ss_dssp GCCC------C--SSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBC------------
T ss_pred hhcc------c--cCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCC------------
Confidence 2100 0 00000111112333333 34567789999999999999776 43333332210
Q ss_pred cceeeccccCccEEEEEeCC--ceeEEEecCCcEEEEeCCCCCccccCCCCCcCCCccccC-CCCcceEE--eeCceeEE
Q 016197 228 TPRLIKELEGVKVKIAAAGF--LHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK-LPYSEEVV--CGGYHTCV 302 (393)
Q Consensus 228 ~p~~i~~~~~~~i~~i~~g~--~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~-~~~v~~v~--~g~~~~~~ 302 (393)
-..+...++..|+.+..-. ...+++|++|.+.-.-...+....-+..... -..+.. ...+..+. .+....++
T Consensus 189 -v~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~--~~~l~~~~d~lv~~~~~~~~~~i~l 265 (327)
T 3uc1_A 189 -VQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVL--TVMYDRRRGRLVGALIVDDDSELYA 265 (327)
T ss_dssp -EESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEE--SSCCCTTTCSEEEEEEECTTCEEEE
T ss_pred -eeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEE--EEEecCCCCeEEEEEEeCCCccEEE
Confidence 0112223345677665543 4577888888766543222211111000000 001111 12233333 35578899
Q ss_pred EEcCCCEEEEeCCCCCCCCC
Q 016197 303 LTSGGELYTWGSNENGCLGI 322 (393)
Q Consensus 303 lt~~g~v~~~G~n~~gqlG~ 322 (393)
+|++|++.-+-..+--.+|.
T Consensus 266 ~T~~G~~ir~~~~~i~~~gR 285 (327)
T 3uc1_A 266 VTSGGGVIRTAARQVRKAGR 285 (327)
T ss_dssp EEGGGCEEEEEGGGSCBCCT
T ss_pred EcCCCeEEEEehhhccccCC
Confidence 99999999887665544444
No 41
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=87.43 E-value=17 Score=33.07 Aligned_cols=148 Identities=11% Similarity=-0.004 Sum_probs=76.6
Q ss_pred eeeccccceEEEEEEcCCCCCcCCCCCCCeeeeeeeccccCCceeEEEeCC---CeeEEEecCCcEEEEecCCCeeccCC
Q 016197 30 WISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGG---AHTLFLTETGCVYATGLNDFGQLGIS 106 (393)
Q Consensus 30 ~~~~~~~~~~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~I~~I~~G~---~~~~~lt~~G~v~~wG~n~~g~lg~~ 106 (393)
+++..+.++.|++|=....+++. .+.....-....|..++... ...+.-..||.|.+|-.......
T Consensus 49 ~~~~~~~~g~i~v~~~~~~~~~~--------~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~--- 117 (402)
T 2aq5_A 49 LICEASGGGAFLVLPLGKTGRVD--------KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLV--- 117 (402)
T ss_dssp EEBCCSSSCCEEEEETTCCEECC--------TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCS---
T ss_pred EEEEEcCCCEEEEEECccCCCCC--------CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCc---
Confidence 33344567778888654443321 01111111234677777754 34444578899999975442211
Q ss_pred CCCCceecceEeccCCCcEEEEEcCCc---eEEEEecCCcEEEEecCCCCCCCCCCCCCcccccCeEec-cCCCceEEEE
Q 016197 107 ENIGYSLEPLRISGLKKEVVQISTGYH---HSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVE-CLSGIFTKQA 182 (393)
Q Consensus 107 ~~~~~~~~p~~i~~~~~~i~~i~~g~~---~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~-~~~~~~i~~i 182 (393)
.........+..-...|..++.... ..+.-..+|.|+.|-.... .....+. ......|..+
T Consensus 118 --~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~-------------~~~~~~~~~~~~~~v~~~ 182 (402)
T 2aq5_A 118 --LPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG-------------AAVLTLGPDVHPDTIYSV 182 (402)
T ss_dssp --SCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT-------------EEEEEECTTTCCSCEEEE
T ss_pred --cccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC-------------CccEEEecCCCCCceEEE
Confidence 0000112233334457877776543 4555677899999965321 0111110 1112235555
Q ss_pred ecC--CceEEEEeCCCcEEEEeC
Q 016197 183 ALG--FEQSVAVTGGGKVLSWGA 203 (393)
Q Consensus 183 ~~g--~~~s~~lt~~G~v~~~G~ 203 (393)
+.. ....+.-..+|.|..|-.
T Consensus 183 ~~~~~~~~l~~~~~d~~i~iwd~ 205 (402)
T 2aq5_A 183 DWSRDGALICTSCRDKRVRVIEP 205 (402)
T ss_dssp EECTTSSCEEEEETTSEEEEEET
T ss_pred EECCCCCEEEEEecCCcEEEEeC
Confidence 543 345555667899999964
No 42
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=87.06 E-value=27 Score=35.09 Aligned_cols=227 Identities=11% Similarity=-0.029 Sum_probs=113.3
Q ss_pred CceeEEEeCCCe--eEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEc--CCceEEEEecCCcEEE
Q 016197 71 HSLKALACGGAH--TLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIST--GYHHSSAITVDGELYM 146 (393)
Q Consensus 71 ~~I~~I~~G~~~--~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~--g~~~~~~lt~~G~vy~ 146 (393)
..|..|+...+. .++-..+|.|.+|-.... .....+...+..|..++. .....+.-..+|.|+.
T Consensus 14 ~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 81 (814)
T 3mkq_A 14 DRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ------------VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRV 81 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTT------------EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred CceEEEEECCCCCEEEEEeCCCEEEEEECCCC------------ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 457777776544 344467889999964321 111222223345666554 3445666678899999
Q ss_pred EecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecC--CceEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccccccc
Q 016197 147 WGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG--FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRST 224 (393)
Q Consensus 147 ~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g--~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~ 224 (393)
|-..+.. ....+.. ....|..++.. ....+.-..+|.|..|-....
T Consensus 82 w~~~~~~-------------~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~------------------ 129 (814)
T 3mkq_A 82 FNYNTGE-------------KVVDFEA-HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN------------------ 129 (814)
T ss_dssp EETTTCC-------------EEEEEEC-CSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGT------------------
T ss_pred EECCCCc-------------EEEEEec-CCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCC------------------
Confidence 9654211 1111111 11235555443 334555677889998854211
Q ss_pred ccccceeeccccCccEEEEEeC---CceeEEEecCCcEEEEeCCCCCccccCCCCCcCCCccccC--CCCcceEEee---
Q 016197 225 SEYTPRLIKELEGVKVKIAAAG---FLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK--LPYSEEVVCG--- 296 (393)
Q Consensus 225 ~~~~p~~i~~~~~~~i~~i~~g---~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~--~~~v~~v~~g--- 296 (393)
......+. .....|..++-. ....+....+|.|+.|-...... ...+.. ...+..++..
T Consensus 130 -~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~ 196 (814)
T 3mkq_A 130 -WALEQTFE-GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP-----------NFTLTTGQERGVNYVDYYPLP 196 (814)
T ss_dssp -SEEEEEEE-CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSC-----------SEEEECCCTTCCCEEEECCST
T ss_pred -ceEEEEEc-CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc-----------eeEEecCCCCCEEEEEEEECC
Confidence 00011111 112245555543 23455567889999996432110 111111 1234555543
Q ss_pred -CceeEEEEcCCCEEEEeCCCCCCCCCCCCCCccCceeecCCCCCCCeEEEEeCCCce--EEEE-CCcEEEEecC
Q 016197 297 -GYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHT--AAIS-EGKILTWGWG 367 (393)
Q Consensus 297 -~~~~~~lt~~g~v~~~G~n~~gqlG~g~~~~~~~p~~v~~~~~~~~i~~i~~G~~~t--~~l~-~g~v~~wG~~ 367 (393)
....++...+|.|..|-.... .....+.. ....|..++...... ++-. ||.|+.|-..
T Consensus 197 ~~~~l~~~~~dg~i~~~d~~~~-----------~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~ 258 (814)
T 3mkq_A 197 DKPYMITASDDLTIKIWDYQTK-----------SCVATLEG--HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258 (814)
T ss_dssp TCCEEEEECTTSEEEEEETTTT-----------EEEEEEEC--CSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred CCCEEEEEeCCCEEEEEECCCC-----------cEEEEEcC--CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 334555667888999865321 01111221 223566666554432 3333 7888888653
No 43
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=86.04 E-value=20 Score=32.54 Aligned_cols=99 Identities=13% Similarity=0.095 Sum_probs=53.2
Q ss_pred CCeeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcC--CceEEEEecCCcEEEEecCCCCCCCC
Q 016197 80 GAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELYMWGKNSNGQLGL 157 (393)
Q Consensus 80 ~~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g--~~~~~~lt~~G~vy~~G~n~~gqlg~ 157 (393)
....+.-..+|.|.+|-.... .....+......|..++.. ....+.-..+|.|+.|-.....
T Consensus 109 ~~~l~~~~~dg~i~iwd~~~~------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~---- 172 (420)
T 3vl1_A 109 MRRFILGTTEGDIKVLDSNFN------------LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS---- 172 (420)
T ss_dssp SCEEEEEETTSCEEEECTTSC------------EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC----
T ss_pred CCEEEEEECCCCEEEEeCCCc------------ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc----
Confidence 334455567888998853211 1111122334477777764 3356666778999999654211
Q ss_pred CCCCCcccccCeEeccCCCceEEEEec--CCceEEEEeCCCcEEEEeCC
Q 016197 158 GKKAAKVIPIPTKVECLSGIFTKQAAL--GFEQSVAVTGGGKVLSWGAG 204 (393)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~i~~i~~--g~~~s~~lt~~G~v~~~G~n 204 (393)
....+.. ....|..++. .....+.-..+|.|..|-..
T Consensus 173 ---------~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 211 (420)
T 3vl1_A 173 ---------NPRTLIG-HRATVTDIAIIDRGRNVLSASLDGTIRLWECG 211 (420)
T ss_dssp ---------CCEEEEC-CSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred ---------CceEEcC-CCCcEEEEEEcCCCCEEEEEcCCCcEEEeECC
Confidence 1111211 1123444443 33455566778899999653
No 44
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=85.89 E-value=40 Score=35.94 Aligned_cols=197 Identities=11% Similarity=0.100 Sum_probs=92.8
Q ss_pred CceeEEEeCCC--eeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEc-CCceEEEEecCCcEEEE
Q 016197 71 HSLKALACGGA--HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIST-GYHHSSAITVDGELYMW 147 (393)
Q Consensus 71 ~~I~~I~~G~~--~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~-g~~~~~~lt~~G~vy~~ 147 (393)
..|..++...+ +.+.-..||.|.+|-......+ .+......|..++. .....+....+|.|+.|
T Consensus 1004 ~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~-------------~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vw 1070 (1249)
T 3sfz_A 1004 KAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-------------FLQAHQETVKDFRLLQDSRLLSWSFDGTVKVW 1070 (1249)
T ss_dssp SCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEE-------------CCBCCSSCEEEEEECSSSEEEEEESSSEEEEE
T ss_pred CceEEEEECCCCCEEEEEcCCCEEEEEECCCCceE-------------EEecCCCcEEEEEEcCCCcEEEEECCCcEEEE
Confidence 34655655443 4445567889999965432111 11223346666654 34456677788999999
Q ss_pred ecCCCCCCCCCCCCCcccccCeEeccCCCceEEEE--ecCCceEEEEeCCCcEEEEeCCCCCCCCCCCCCCccccccccc
Q 016197 148 GKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQA--ALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTS 225 (393)
Q Consensus 148 G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i--~~g~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~~ 225 (393)
-....- ....+..- ...|..+ +-.....+.-..+|.|+.|-......+
T Consensus 1071 d~~~~~-------------~~~~~~~~-~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~---------------- 1120 (1249)
T 3sfz_A 1071 NVITGR-------------IERDFTCH-QGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPL---------------- 1120 (1249)
T ss_dssp ETTTTC-------------CCEEEECC-SSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCS----------------
T ss_pred ECCCCc-------------eeEEEccc-CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCccee----------------
Confidence 654211 01111110 1112222 222334445566777877754321110
Q ss_pred cccceeeccccCccEEEEEeCCc--eeEEEecCCcEEEEeCCCCCccccCCCCCcCCCccccCCCCcceEEeeCceeEEE
Q 016197 226 EYTPRLIKELEGVKVKIAAAGFL--HSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVL 303 (393)
Q Consensus 226 ~~~p~~i~~~~~~~i~~i~~g~~--~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~v~~v~~g~~~~~~l 303 (393)
..+. .....|..++...+ ..+.-..||.|+.|-......+..-. ..............|..++...+...++
T Consensus 1121 ----~~l~-~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~v~~l~fs~dg~~l~ 1194 (1249)
T 3sfz_A 1121 ----HELK-GHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCA-PISVEEGTATHGGWVTDVCFSPDSKTLV 1194 (1249)
T ss_dssp ----BCCC-CCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCC-CCC-------CCSCCCEEEECTTSSCEE
T ss_pred ----eeec-cCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEec-cccccccccccCceEEEEEECCCCCEEE
Confidence 0011 11124555555433 34444578888888654321111000 0000000011122377777766655555
Q ss_pred EcCCCEEEEeCCC
Q 016197 304 TSGGELYTWGSNE 316 (393)
Q Consensus 304 t~~g~v~~~G~n~ 316 (393)
+.+|.|..|-...
T Consensus 1195 s~~g~v~vwd~~~ 1207 (1249)
T 3sfz_A 1195 SAGGYLKWWNVAT 1207 (1249)
T ss_dssp EESSSEEEBCSSS
T ss_pred ECCCeEEEEECCC
Confidence 6668888887544
No 45
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=85.71 E-value=18 Score=31.93 Aligned_cols=202 Identities=11% Similarity=-0.032 Sum_probs=102.6
Q ss_pred CCceeEEEeC----CCeeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcCC----ceEEEEecC
Q 016197 70 KHSLKALACG----GAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY----HHSSAITVD 141 (393)
Q Consensus 70 ~~~I~~I~~G----~~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g~----~~~~~lt~~ 141 (393)
...|..|+.. ..+.+.-..||.|.+|-.... .......+......|..++... ...+....+
T Consensus 55 ~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 124 (379)
T 3jrp_A 55 EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG----------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 124 (379)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETT----------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred CCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCC----------ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCC
Confidence 3568888875 445566678899999964321 1011122222334777777654 456777889
Q ss_pred CcEEEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecC---------------CceEEEEeCCCcEEEEeCCCC
Q 016197 142 GELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG---------------FEQSVAVTGGGKVLSWGAGGS 206 (393)
Q Consensus 142 G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g---------------~~~s~~lt~~G~v~~~G~n~~ 206 (393)
|.|..|-...... ..+..+. .....|..++.. ....++-..+|.|+.|-....
T Consensus 125 ~~i~v~d~~~~~~-----------~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 192 (379)
T 3jrp_A 125 GKVSVVEFKENGT-----------TSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD 192 (379)
T ss_dssp SEEEEEECCTTSC-----------CCEEEEE-CCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETT
T ss_pred CcEEEEecCCCCc-----------eeeEEec-CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCC
Confidence 9999997643211 0111111 112234444433 345666678899999954211
Q ss_pred CCCCCCCCCCccccccccccccceeeccccCccEEEEEeCC-----ceeEEEecCCcEEEEeCCCCCccccCCCCCcCCC
Q 016197 207 GRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGF-----LHSACIDENGRVYIFGDRAVDKMLFQEGNHARRP 281 (393)
Q Consensus 207 gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~-----~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p 281 (393)
. ....+..........|..++-.. ...+....+|.|..|-....... ......
T Consensus 193 ~-----------------~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~ 250 (379)
T 3jrp_A 193 A-----------------QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP-----WKKTLL 250 (379)
T ss_dssp T-----------------TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC-----CEEEES
T ss_pred C-----------------cceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCcc-----ceeeee
Confidence 0 00001000011123466666553 34555678899999965431100 000000
Q ss_pred ccccCCCCcceEEeeCc--eeEEEEcCCCEEEEeCC
Q 016197 282 SLISKLPYSEEVVCGGY--HTCVLTSGGELYTWGSN 315 (393)
Q Consensus 282 ~~i~~~~~v~~v~~g~~--~~~~lt~~g~v~~~G~n 315 (393)
........|..++...+ ..++...||.|+.|-.+
T Consensus 251 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 251 KEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp SSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred ccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 00001123555555433 44555688999988765
No 46
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=84.47 E-value=13 Score=28.95 Aligned_cols=110 Identities=16% Similarity=0.073 Sum_probs=65.0
Q ss_pred cCCceeEEEeCC-CeeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcC-CceEEEEecCCcEEE
Q 016197 69 EKHSLKALACGG-AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG-YHHSSAITVDGELYM 146 (393)
Q Consensus 69 ~~~~I~~I~~G~-~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g-~~~~~~lt~~G~vy~ 146 (393)
+..+.+++.|-. .+.+-+..||.|-.-.... .. ..-..+......++.|.|- ....+++..+|+||.
T Consensus 28 ~~~~~~~LYcr~~g~~LqI~~dG~V~Gt~~~~----------~~-~s~lei~sv~~G~V~L~g~~sg~yL~mn~~G~l~G 96 (142)
T 3p6j_A 28 EGNGEVLLKSTETGQYLRINPDGTVDGTRDRS----------DT-HIQFQISPEGNGEVLLKSTETGQYLRINPDGTVDG 96 (142)
T ss_dssp CSTTCEEEEETTTCCEEEECTTSBEEEECCTT----------CG-GGCEEEEEEETTEEEEEETTTTEEEEECTTSBEEE
T ss_pred ccCcEEEEEEeCCCEEEEECCCCCEeeecCCC----------CC-ceEEEEEEccCCEEEEEEecCCEEEeECCCCCEee
Confidence 456688999976 6778889999998654321 11 1111122122256777764 578889999999997
Q ss_pred EecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecCCceEEEEeCCCcEEEE
Q 016197 147 WGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSW 201 (393)
Q Consensus 147 ~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~s~~lt~~G~v~~~ 201 (393)
--.. .+.........+..-...|..+..|. .+++.++|++|.-
T Consensus 97 s~~~----------t~ecsflEi~~en~y~v~i~g~~sg~--YLamnk~Grlygs 139 (142)
T 3p6j_A 97 TRDR----------SDTHIQFQISPEGNGEVLLKSTETGQ--YLRINPDGTVDGT 139 (142)
T ss_dssp ECCT----------TCGGGCEEEEECSTTCEEEEETTTCC--EEEECTTSBEEEE
T ss_pred cccC----------CCCceEEEEEeecCcEEEEEEecCCE--EEEECCCcCCccC
Confidence 4221 11111122222233344455555554 8999999999963
No 47
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=84.02 E-value=25 Score=32.12 Aligned_cols=111 Identities=10% Similarity=-0.062 Sum_probs=60.0
Q ss_pred CceeEEEeCCC--eeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcCCceEEEEecCCcEEEEe
Q 016197 71 HSLKALACGGA--HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWG 148 (393)
Q Consensus 71 ~~I~~I~~G~~--~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G 148 (393)
..|..|+...+ +.+.-..||.|.+|-..... ....+..-...+..++......+.-..++.++.|-
T Consensus 148 ~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~------------~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d 215 (420)
T 4gga_A 148 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK------------RLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHD 215 (420)
T ss_dssp CCEEEEEECTTSSEEEEEETTSCEEEEETTTTE------------EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEE
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc------------EEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEee
Confidence 45888877654 34444788999999654321 11222222336666766666666667778888875
Q ss_pred cCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecCCceEEEEeCCCcEEEEeCC
Q 016197 149 KNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAG 204 (393)
Q Consensus 149 ~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~s~~lt~~G~v~~~G~n 204 (393)
..... .........................+....+|.+..|-..
T Consensus 216 ~~~~~-----------~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~ 260 (420)
T 4gga_A 216 VRVAE-----------HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA 260 (420)
T ss_dssp TTSSS-----------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESS
T ss_pred ecccc-----------eeeEEecccccceeeeeecCCCCeeeeeeccccceEEeec
Confidence 43210 0111111112222233333444566667788999988653
No 48
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=84.00 E-value=26 Score=32.23 Aligned_cols=259 Identities=12% Similarity=0.045 Sum_probs=122.5
Q ss_pred CceeEEEeCCC---eeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcC---CceEEEEecCCcE
Q 016197 71 HSLKALACGGA---HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG---YHHSSAITVDGEL 144 (393)
Q Consensus 71 ~~I~~I~~G~~---~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g---~~~~~~lt~~G~v 144 (393)
..|..|+.... ..+.-..+|.|++|-......... ..........+..-...|..++.. ....+.-..+|.|
T Consensus 129 ~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 206 (430)
T 2xyi_A 129 GEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE--PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTI 206 (430)
T ss_dssp SCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC--TTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCE
T ss_pred CcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC--ccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeE
Confidence 45777777654 333446789999997643211000 000011112222233355555542 2256666778999
Q ss_pred EEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEec---CCceEEEEeCCCcEEEEeCCCCCCCCCCCCCCccccc
Q 016197 145 YMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL---GFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFL 221 (393)
Q Consensus 145 y~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~---g~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~ 221 (393)
..|-.+..... .........+. .....|..|+. +....+....+|.|+.|-......
T Consensus 207 ~vwd~~~~~~~------~~~~~~~~~~~-~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~------------- 266 (430)
T 2xyi_A 207 CLWDINATPKE------HRVIDAKNIFT-GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT------------- 266 (430)
T ss_dssp EEEETTSCCBG------GGEEECSEEEC-CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS-------------
T ss_pred EEEeCCCCCCC------Cceeccceeec-CCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC-------------
Confidence 99976542110 00000111111 12224666654 344555667899999997643210
Q ss_pred cccccccceeeccccCccEEEEEeCCc---eeEEEecCCcEEEEeCCCCCccccCCCCCcCCCcccc-CCCCcceEEeeC
Q 016197 222 RSTSEYTPRLIKELEGVKVKIAAAGFL---HSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLIS-KLPYSEEVVCGG 297 (393)
Q Consensus 222 ~~~~~~~p~~i~~~~~~~i~~i~~g~~---~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~-~~~~v~~v~~g~ 297 (393)
..+..........|..++.... ..+.-..+|.|..|-.....+ ....+. ....|..|....
T Consensus 267 -----~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~----------~~~~~~~h~~~v~~i~~sp 331 (430)
T 2xyi_A 267 -----SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL----------KLHSFESHKDEIFQVQWSP 331 (430)
T ss_dssp -----SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS----------CSEEEECCSSCEEEEEECS
T ss_pred -----CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC----------CeEEeecCCCCEEEEEECC
Confidence 0011000111224566655432 344556788999996543211 001111 122366666543
Q ss_pred c---eeEEEEcCCCEEEEeCCCCCCCCCCCCCCccCceeecC-CCCCCCeEEEEeCCCc--e-EEEE-CCcEEEEec
Q 016197 298 Y---HTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQG-PFSESPVDQVSCGWKH--T-AAIS-EGKILTWGW 366 (393)
Q Consensus 298 ~---~~~~lt~~g~v~~~G~n~~gqlG~g~~~~~~~p~~v~~-~~~~~~i~~i~~G~~~--t-~~l~-~g~v~~wG~ 366 (393)
. ..+.-..+|.|..|-....+..-.........|..+.. .-....|..++.-... . +.-. ||.|.+|=.
T Consensus 332 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~ 408 (430)
T 2xyi_A 332 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408 (430)
T ss_dssp SCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred CCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEc
Confidence 3 24445578889998765532211000000001222221 1123457877766543 3 3334 899999976
No 49
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=83.93 E-value=22 Score=31.24 Aligned_cols=107 Identities=10% Similarity=0.026 Sum_probs=62.4
Q ss_pred CCceeEEEeCCC--eeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEc--CC--ceEEEEecCCc
Q 016197 70 KHSLKALACGGA--HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIST--GY--HHSSAITVDGE 143 (393)
Q Consensus 70 ~~~I~~I~~G~~--~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~--g~--~~~~~lt~~G~ 143 (393)
...|..++...+ +.+....||.|.+|-..... +..+......|..++. .. ...+.-..+|.
T Consensus 86 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-------------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 152 (368)
T 3mmy_A 86 TGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQ-------------AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKT 152 (368)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-------------EEEEEECSSCEEEEEEEECSSCEEEEEEETTSE
T ss_pred cCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCC-------------ceeeccccCceEEEEEEeCCCCCEEEEccCCCc
Confidence 356777777544 45555788999999654211 1122224457777764 33 33555577899
Q ss_pred EEEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecCCceEEEEeCCCcEEEEeCC
Q 016197 144 LYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAG 204 (393)
Q Consensus 144 vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~s~~lt~~G~v~~~G~n 204 (393)
|+.|-....- ....+... ..+..+..-....++.+.++.+..|-..
T Consensus 153 i~vwd~~~~~-------------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 198 (368)
T 3mmy_A 153 LKFWDTRSSN-------------PMMVLQLP--ERCYCADVIYPMAVVATAERGLIVYQLE 198 (368)
T ss_dssp EEEECSSCSS-------------CSEEEECS--SCEEEEEEETTEEEEEEGGGCEEEEECS
T ss_pred EEEEECCCCc-------------EEEEEecC--CCceEEEecCCeeEEEeCCCcEEEEEec
Confidence 9999543210 11111111 1345555555677788889999999653
No 50
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=83.85 E-value=21 Score=31.08 Aligned_cols=218 Identities=12% Similarity=-0.036 Sum_probs=116.4
Q ss_pred cCCceeEEEeC--CCeeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEc---CCceEEEEecCCc
Q 016197 69 EKHSLKALACG--GAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIST---GYHHSSAITVDGE 143 (393)
Q Consensus 69 ~~~~I~~I~~G--~~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~---g~~~~~~lt~~G~ 143 (393)
++..+..+... .++.+++|++|++|.--..+... .. ..-. ++ -.++|+.+.+ .....+++|++|.
T Consensus 22 ~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~---~~-----~~~l-l~-~~e~i~~v~~~~~~~~~~v~~T~~G~ 91 (276)
T 3no0_A 22 EKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQ---GS-----KVSL-KS-REEKIVGAFIREKFGNRLLLATKKGY 91 (276)
T ss_dssp SCCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHT---SE-----ECCC-SS-TTCCEEEEEEGGGSCSEEEEEETTSE
T ss_pred CCCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCcc---Cc-----cccc-CC-CCCEEEEEECCcCCCCEEEEEeCCCE
Confidence 44556555444 44588899999999764322110 00 0001 22 2458888765 2356889999998
Q ss_pred EEEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEe--cCCceEEEEeCCCcEEEEeCCCCCCCCCCCCCCccccc
Q 016197 144 LYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAA--LGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFL 221 (393)
Q Consensus 144 vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~--~g~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~ 221 (393)
+.-.-...+-+- ..-...+...+++.++.+. .+..+.+++|++|++|.+-.......++....
T Consensus 92 iKr~~l~~~~~~---------~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~G------ 156 (276)
T 3no0_A 92 VKKIPLAEFEYK---------AQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARG------ 156 (276)
T ss_dssp EEEEEGGGTTTC---------STTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCC------
T ss_pred EEEEEHHHhhhh---------cCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCC------
Confidence 888765443200 0001111122333454443 34557899999999999977665554443221
Q ss_pred cccccccceeeccccCccEEEEEeC--CceeEEEecCCcEEEEeCCCCCccccCCCCCcCCCccccCCCCcceEE--eeC
Q 016197 222 RSTSEYTPRLIKELEGVKVKIAAAG--FLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVV--CGG 297 (393)
Q Consensus 222 ~~~~~~~p~~i~~~~~~~i~~i~~g--~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~v~~v~--~g~ 297 (393)
. ..+...++..|+.+... ....+++|++|.+.-.-..++....-+...... +.....+..+. .+.
T Consensus 157 ---v----~~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~----i~~~~~lv~~~~~~~~ 225 (276)
T 3no0_A 157 ---V----QGIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEV----SGTKDTLVDLIPIKEE 225 (276)
T ss_dssp ---E----ECCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEEC----CCSSSCEEEEEEESSE
T ss_pred ---E----EEEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEE----EcCCCcEEEEEEeCCC
Confidence 0 01222233456665443 346778889998776644333222111100000 01112333332 345
Q ss_pred ceeEEEEcCCCEEE--EeCCCCCCCCC
Q 016197 298 YHTCVLTSGGELYT--WGSNENGCLGI 322 (393)
Q Consensus 298 ~~~~~lt~~g~v~~--~G~n~~gqlG~ 322 (393)
+..++++++|++.. +-.++--.+|.
T Consensus 226 ~~i~~~t~~G~~ir~~~~~~~i~~~~R 252 (276)
T 3no0_A 226 VELLITTKNGKAFYDKINQKDIPLSTK 252 (276)
T ss_dssp EEEEEEETTSCEEEEEEEGGGSCBCCT
T ss_pred CEEEEEcCCCeEEEeeeCHHHCCCcCC
Confidence 67889999999988 77665544443
No 51
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=83.33 E-value=40 Score=33.87 Aligned_cols=198 Identities=10% Similarity=0.053 Sum_probs=101.8
Q ss_pred CceeEEEeCCC--eeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcC----CceEEEEecCCcE
Q 016197 71 HSLKALACGGA--HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG----YHHSSAITVDGEL 144 (393)
Q Consensus 71 ~~I~~I~~G~~--~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g----~~~~~~lt~~G~v 144 (393)
..|..++...+ +.+.-..||.|.+|-... ........+..-...|..++.. ....+.-..+|.|
T Consensus 10 ~~V~~l~~s~dg~~latg~~dg~I~vwd~~~----------~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I 79 (753)
T 3jro_A 10 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEG----------ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 79 (753)
T ss_dssp CCEEEECCCSSSCCEEEEETTTEEEEEEEET----------TEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCE
T ss_pred ceeEEEEECCCCCeEEEEECCCcEEEEecCC----------CCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeE
Confidence 34666665433 344446789999995321 0111122233334478888764 4566777889999
Q ss_pred EEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecC----CceEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccc
Q 016197 145 YMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG----FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF 220 (393)
Q Consensus 145 y~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g----~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~ 220 (393)
+.|-.... ...+..........|..++.. ....+..+.+|.|..|-.......
T Consensus 80 ~vwd~~~~------------~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~----------- 136 (753)
T 3jro_A 80 LIWKEENG------------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT----------- 136 (753)
T ss_dssp EEEEEETT------------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCC-----------
T ss_pred EEEECCCC------------cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc-----------
Confidence 99965321 000111111122346666654 345666788999999965432110
Q ss_pred ccccccccceeeccccCccEEEEEeC---------------CceeEEEecCCcEEEEeCCCCCccccCCCCCcCCCcccc
Q 016197 221 LRSTSEYTPRLIKELEGVKVKIAAAG---------------FLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLIS 285 (393)
Q Consensus 221 ~~~~~~~~p~~i~~~~~~~i~~i~~g---------------~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~ 285 (393)
.+..+. .....|..+... ....+.-..+|.|+.|-....... ......+.
T Consensus 137 -------~~~~~~-~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~-------~~~~~~~~ 201 (753)
T 3jro_A 137 -------SPIIID-AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-------YVLESTLE 201 (753)
T ss_dssp -------CCEEEE-CCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTE-------EEEEEEEC
T ss_pred -------ceeEee-cCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCccc-------ceeeeeec
Confidence 001111 111234444443 344566677899999854331100 00001111
Q ss_pred -CCCCcceEEeeCc-----eeEEEEcCCCEEEEeCCC
Q 016197 286 -KLPYSEEVVCGGY-----HTCVLTSGGELYTWGSNE 316 (393)
Q Consensus 286 -~~~~v~~v~~g~~-----~~~~lt~~g~v~~~G~n~ 316 (393)
....|..++.... ..+....||.|..|-...
T Consensus 202 ~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 202 GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp CCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred CCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence 1223666665533 445566889999997654
No 52
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=83.01 E-value=25 Score=31.37 Aligned_cols=207 Identities=12% Similarity=0.088 Sum_probs=103.1
Q ss_pred cCCceeEEEeCC---CeeEEEecCCcEEEEecCCCeeccCCCCCCceecce-Ee-----ccCCCcEEEEEc---CCceEE
Q 016197 69 EKHSLKALACGG---AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPL-RI-----SGLKKEVVQIST---GYHHSS 136 (393)
Q Consensus 69 ~~~~I~~I~~G~---~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~-~i-----~~~~~~i~~i~~---g~~~~~ 136 (393)
....|..|+... ...+.-..||.|.+|-........ .....+. .. ......|..++. +....+
T Consensus 42 h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 116 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQS-----YYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFT 116 (408)
T ss_dssp CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSS-----CEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEE
T ss_pred cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccc-----eEeccccccccccccccCCCcEEEEEEccCCCcEEE
Confidence 345677787765 344455679999999754321110 0000000 00 112347777775 344566
Q ss_pred EEecCCcEEEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecCC-----ceEEEEeCCCcEEEEeCCCCCCCCC
Q 016197 137 AITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGF-----EQSVAVTGGGKVLSWGAGGSGRLGH 211 (393)
Q Consensus 137 ~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~-----~~s~~lt~~G~v~~~G~n~~gqlg~ 211 (393)
.-..+|.|..|-.... .....+.... .+..+.... ...++-..+|.|+.|-......
T Consensus 117 s~~~d~~i~iwd~~~~-------------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~--- 178 (408)
T 4a11_B 117 SSSFDKTLKVWDTNTL-------------QTADVFNFEE--TVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC--- 178 (408)
T ss_dssp EEETTSEEEEEETTTT-------------EEEEEEECSS--CEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC---
T ss_pred EEeCCCeEEEeeCCCC-------------ccceeccCCC--ceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce---
Confidence 6778999999965421 0111111111 233333221 2556667889999996532110
Q ss_pred CCCCCccccccccccccceeeccccCccEEEEEeCCce---eEEEecCCcEEEEeCCCCCcccc-CCCC---CcCCC-cc
Q 016197 212 GQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLH---SACIDENGRVYIFGDRAVDKMLF-QEGN---HARRP-SL 283 (393)
Q Consensus 212 ~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~---~~~lt~~G~vy~wG~n~~gqlg~-~~~~---~~~~p-~~ 283 (393)
...+.. ....|..++...+. .+.-..+|.|+.|-.......-. -... ....+ ..
T Consensus 179 -----------------~~~~~~-~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (408)
T 4a11_B 179 -----------------SHILQG-HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESA 240 (408)
T ss_dssp -----------------CEEECC-CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTS
T ss_pred -----------------eeeecC-CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccc
Confidence 111111 12246666554332 45567889999997654221100 0000 00000 00
Q ss_pred -ccCCCCcceEEeeCc--eeEEEEcCCCEEEEeCCC
Q 016197 284 -ISKLPYSEEVVCGGY--HTCVLTSGGELYTWGSNE 316 (393)
Q Consensus 284 -i~~~~~v~~v~~g~~--~~~~lt~~g~v~~~G~n~ 316 (393)
......|..++...+ +.++...||.|..|-...
T Consensus 241 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 276 (408)
T 4a11_B 241 NTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSN 276 (408)
T ss_dssp SCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred cccccCceeEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence 111123666666443 556667899999998754
No 53
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=82.48 E-value=35 Score=32.61 Aligned_cols=145 Identities=9% Similarity=-0.004 Sum_probs=75.0
Q ss_pred EEEEecCCceEEEEeC-CCcEEEEeCCCCCCCCCCCCCCccccccccccccceeeccccCccEEEEEeC--CceeEEEec
Q 016197 179 TKQAALGFEQSVAVTG-GGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAG--FLHSACIDE 255 (393)
Q Consensus 179 i~~i~~g~~~s~~lt~-~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g--~~~~~~lt~ 255 (393)
+..++......++-.. +|.|+.|-.... ...+..+. .....|..++.. ....+.-..
T Consensus 449 ~~~~~~~~~~l~~~~~~d~~i~~~~~~~~-------------------~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~ 508 (615)
T 1pgu_A 449 GSAVSLSQNYVAVGLEEGNTIQVFKLSDL-------------------EVSFDLKT-PLRAKPSYISISPSETYIAAGDV 508 (615)
T ss_dssp EEEEEECSSEEEEEETTTSCEEEEETTEE-------------------EEEEECSS-CCSSCEEEEEECTTSSEEEEEET
T ss_pred ceEEEEcCCEEEEeecCCCeEEEEECCCc-------------------cccccccC-CccCceEEEEECCCCCEEEEcCC
Confidence 4555544555555666 888888855321 00001111 112246666553 345555667
Q ss_pred CCcEEEEeCCCCCccccCCCCCcCCCcccc--CCCCcceEEeeC------------ceeEEEEcCCCEEEEeCCCCCCCC
Q 016197 256 NGRVYIFGDRAVDKMLFQEGNHARRPSLIS--KLPYSEEVVCGG------------YHTCVLTSGGELYTWGSNENGCLG 321 (393)
Q Consensus 256 ~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~--~~~~v~~v~~g~------------~~~~~lt~~g~v~~~G~n~~gqlG 321 (393)
+|.|+.|-......+. .+. ....|..++... ...+....||.|+.|-.....+
T Consensus 509 dg~i~iw~~~~~~~~~-----------~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-- 575 (615)
T 1pgu_A 509 MGKILLYDLQSREVKT-----------SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK-- 575 (615)
T ss_dssp TSCEEEEETTTTEEEE-----------CCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTC--
T ss_pred CCeEEEeeCCCCccee-----------EeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCce--
Confidence 8999999654322211 111 123466666643 3445566789999998754311
Q ss_pred CCCCCCccCceeecCCCCCCCeEEEEeCCCceEEEE--CCcEEEEec
Q 016197 322 IGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAIS--EGKILTWGW 366 (393)
Q Consensus 322 ~g~~~~~~~p~~v~~~~~~~~i~~i~~G~~~t~~l~--~g~v~~wG~ 366 (393)
+.... .-....|..++.-....++.. ||.|..|=.
T Consensus 576 ---------~~~~~-~~h~~~v~~l~~s~~~~l~s~~~d~~v~iw~~ 612 (615)
T 1pgu_A 576 ---------IIKAL-NAHKDGVNNLLWETPSTLVSSGADACIKRWNV 612 (615)
T ss_dssp ---------CEEET-TSSTTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred ---------echhh-hcCccceEEEEEcCCCCeEEecCCceEEEEee
Confidence 11111 112346776665544433333 888999854
No 54
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=82.32 E-value=26 Score=30.93 Aligned_cols=247 Identities=9% Similarity=-0.036 Sum_probs=115.6
Q ss_pred cCCceeEEEeCCCe--eEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcC--CceEEEEecCCcE
Q 016197 69 EKHSLKALACGGAH--TLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGEL 144 (393)
Q Consensus 69 ~~~~I~~I~~G~~~--~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g--~~~~~~lt~~G~v 144 (393)
....|..++...+. .++-..+|.|++|-.... .......+......|..++.. ....+.-..+|.|
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~----------~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i 76 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGN----------KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNA 76 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETT----------EEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCC----------cEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeE
Confidence 44567777776543 333457889999954321 001222233334467666543 4455666778889
Q ss_pred EEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEec--CCceEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccccc
Q 016197 145 YMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL--GFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLR 222 (393)
Q Consensus 145 y~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~--g~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~ 222 (393)
+.|-.... ...+..........|..++. .....++-..+|.|+.|-......
T Consensus 77 ~vwd~~~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~-------------- 130 (372)
T 1k8k_C 77 YVWTLKGR------------TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND-------------- 130 (372)
T ss_dssp EEEEEETT------------EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT--------------
T ss_pred EEEECCCC------------eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCc--------------
Confidence 98854321 00111110111223555443 334555567788888885432110
Q ss_pred ccccccceeeccccCccEEEEEeCC--ceeEEEecCCcEEEEeCCCCCccccCCC----CCcCCCccccC----CCCcce
Q 016197 223 STSEYTPRLIKELEGVKVKIAAAGF--LHSACIDENGRVYIFGDRAVDKMLFQEG----NHARRPSLISK----LPYSEE 292 (393)
Q Consensus 223 ~~~~~~p~~i~~~~~~~i~~i~~g~--~~~~~lt~~G~vy~wG~n~~gqlg~~~~----~~~~~p~~i~~----~~~v~~ 292 (393)
......+.......|..+.... ...++-..+|.|+.|-......-..... ........+.. ...|..
T Consensus 131 ---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 207 (372)
T 1k8k_C 131 ---WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHG 207 (372)
T ss_dssp ---EEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEE
T ss_pred ---ceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEE
Confidence 0001111111123566665543 3445556789999996432110000000 00001111111 112555
Q ss_pred EEeeC--ceeEEEEcCCCEEEEeCCCCCCCCCCCCCCccCceeecCCCCCCCeEEEEeCCCce-EEEE-CCcEEEEecC
Q 016197 293 VVCGG--YHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHT-AAIS-EGKILTWGWG 367 (393)
Q Consensus 293 v~~g~--~~~~~lt~~g~v~~~G~n~~gqlG~g~~~~~~~p~~v~~~~~~~~i~~i~~G~~~t-~~l~-~g~v~~wG~~ 367 (393)
+.... .+.+....||.|..|-..... ....+. .....|..++...... ++.. |+.|+.|-..
T Consensus 208 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~-----------~~~~~~--~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~ 273 (372)
T 1k8k_C 208 VCFSANGSRVAWVSHDSTVCLADADKKM-----------AVATLA--SETLPLLAVTFITESSLVAAGHDCFPVLFTYD 273 (372)
T ss_dssp EEECSSSSEEEEEETTTEEEEEEGGGTT-----------EEEEEE--CSSCCEEEEEEEETTEEEEEETTSSCEEEEEE
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCCCc-----------eeEEEc--cCCCCeEEEEEecCCCEEEEEeCCeEEEEEcc
Confidence 55533 344555677888888654311 011111 1233566665554333 3444 8888888764
No 55
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=82.13 E-value=28 Score=31.17 Aligned_cols=228 Identities=11% Similarity=0.018 Sum_probs=108.3
Q ss_pred ceeEEEeCCC-eeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcCC--ceEEEEecCCcEEEEe
Q 016197 72 SLKALACGGA-HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY--HHSSAITVDGELYMWG 148 (393)
Q Consensus 72 ~I~~I~~G~~-~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g~--~~~~~lt~~G~vy~~G 148 (393)
.|..|+...+ ..++-..+|.|.+|-..... ...........-...|..++... ...+.-..+|.|..|-
T Consensus 96 ~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~--------~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd 167 (357)
T 4g56_B 96 GVTDVAWVSEKGILVASDSGAVELWEILEKE--------SLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWD 167 (357)
T ss_dssp CEEEEEEETTTEEEEEETTSCEEEC----------------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred CEEEEEEcCCCCEEEEECCCEEEEeeccccc--------eeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 4666665443 34444667788887432110 00011111112234677776543 3445556788999995
Q ss_pred cCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecC---CceEEEEeCCCcEEEEeCCCCCCCCCCCCCCccccccccc
Q 016197 149 KNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG---FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTS 225 (393)
Q Consensus 149 ~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g---~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~~ 225 (393)
.... .....+.. -...|..|+.. ....+....+|.|..|-.......
T Consensus 168 ~~~~-------------~~~~~~~~-h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~---------------- 217 (357)
T 4g56_B 168 LSQK-------------AVLKSYNA-HSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPA---------------- 217 (357)
T ss_dssp TTTT-------------EEEEEECC-CSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCB----------------
T ss_pred CCCC-------------cEEEEEcC-CCCCEEEEEEccCCCceeeeeccCCceEEEECCCCcee----------------
Confidence 4321 00111111 12235555542 334555678899999843221100
Q ss_pred cccceeec-cccCccEEEEEeC---CceeEEEecCCcEEEEeCCCCCccccCCCCCcCCCccccC-CCCcceEEeeC---
Q 016197 226 EYTPRLIK-ELEGVKVKIAAAG---FLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK-LPYSEEVVCGG--- 297 (393)
Q Consensus 226 ~~~p~~i~-~~~~~~i~~i~~g---~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~-~~~v~~v~~g~--- 297 (393)
..+. ......+..++.. ....++-..++.|+.|-..... ....+.. ...|..++...
T Consensus 218 ----~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~-----------~~~~~~~~~~~v~~l~~sp~~~ 282 (357)
T 4g56_B 218 ----TRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD-----------SAQTSAVHSQNITGLAYSYHSS 282 (357)
T ss_dssp ----CBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG-----------GCEEECCCSSCEEEEEECSSSS
T ss_pred ----eeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCc-----------EeEEEeccceeEEEEEEcCCCC
Confidence 0000 0111235555543 2223334678889988543211 1111111 22366666543
Q ss_pred ceeEEEEcCCCEEEEeCCCCCCCCCCCCCCccCceeecCCCCCCCeEEEEeCC--CceEEEE--CCcEEEEec
Q 016197 298 YHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGW--KHTAAIS--EGKILTWGW 366 (393)
Q Consensus 298 ~~~~~lt~~g~v~~~G~n~~gqlG~g~~~~~~~p~~v~~~~~~~~i~~i~~G~--~~t~~l~--~g~v~~wG~ 366 (393)
...+.-..||.|+.|-... +++ .... --...|..|+.-. ...++-. ||.|..|=.
T Consensus 283 ~~lasgs~D~~i~iwd~~~-~~~-----------~~~~--~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~ 341 (357)
T 4g56_B 283 PFLASISEDCTVAVLDADF-SEV-----------FRDL--SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHL 341 (357)
T ss_dssp CCEEEEETTSCEEEECTTS-CEE-----------EEEC--CCSSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred CEEEEEeCCCEEEEEECCC-CcE-----------eEEC--CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEEC
Confidence 2334456889999995432 111 1111 1234688887653 2334433 899999975
No 56
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=81.29 E-value=23 Score=30.86 Aligned_cols=17 Identities=24% Similarity=0.110 Sum_probs=12.0
Q ss_pred ceEEEEeCCCcEEEEeCC
Q 016197 187 EQSVAVTGGGKVLSWGAG 204 (393)
Q Consensus 187 ~~s~~lt~~G~v~~~G~n 204 (393)
.|++++. +++||++|-.
T Consensus 161 ~~~~~~~-~~~iyv~GG~ 177 (308)
T 1zgk_A 161 GVGVAVL-NRLLYAVGGF 177 (308)
T ss_dssp SCEEEEE-TTEEEEECCB
T ss_pred ceEEEEE-CCEEEEEeCC
Confidence 4555555 7899999853
No 57
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=80.99 E-value=27 Score=30.36 Aligned_cols=196 Identities=15% Similarity=-0.021 Sum_probs=106.6
Q ss_pred CCceEEEEecCCcEEEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEec---CCceEEEEeCCCcEEEEeCCCCC
Q 016197 131 GYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL---GFEQSVAVTGGGKVLSWGAGGSG 207 (393)
Q Consensus 131 g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~---g~~~s~~lt~~G~v~~~G~n~~g 207 (393)
..++.+++|++|++|..-....-+. . ... + ..++++|+.+.+ .....+++|++|.+.-.-...+.
T Consensus 34 t~~~ll~fT~~G~v~~~~~~~lp~~------~---~~~--l-l~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~ 101 (276)
T 3no0_A 34 FTEGLFLVSNRGRVYWIAGSQALQG------S---KVS--L-KSREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE 101 (276)
T ss_dssp TTSCEEEEETTSEEEEECSHHHHTS------E---ECC--C-SSTTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT
T ss_pred CCCEEEEEcCCCeEEEEEhhhCccC------c---ccc--c-CCCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh
Confidence 4567899999999998754321000 0 000 3 335667887765 22578889999999887654442
Q ss_pred CCCCCCCCCccccccccccccceeeccccCccEEEEEe--CCceeEEEecCCcEEEEeCCCCCccccCCCCCcCCCcccc
Q 016197 208 RLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAA--GFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLIS 285 (393)
Q Consensus 208 qlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~--g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~ 285 (393)
+-. . -...+...++..+..+.. +.+..+++|++|++|.+-..+.-..+-...... -..+.
T Consensus 102 ~~~--~--------------G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~--~i~L~ 163 (276)
T 3no0_A 102 YKA--Q--------------GMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQ--GIKLE 163 (276)
T ss_dssp TCS--T--------------TEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE--CCCCC
T ss_pred hhc--C--------------CeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEE--EEccC
Confidence 100 0 011111122334544433 456689999999999986544333332211111 01122
Q ss_pred CCCCcceEEee--CceeEEEEcCCCEEEEeCCCCCCCCCCCCCCccCceeecCCCCCCCeEEEE--eCCCceEEEE-CCc
Q 016197 286 KLPYSEEVVCG--GYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVS--CGWKHTAAIS-EGK 360 (393)
Q Consensus 286 ~~~~v~~v~~g--~~~~~~lt~~g~v~~~G~n~~gqlG~g~~~~~~~p~~v~~~~~~~~i~~i~--~G~~~t~~l~-~g~ 360 (393)
.-+.|..+... ....+++|++|.+.-.-..++-..+.+..-.... ..+.+++.+. .+....++++ +|+
T Consensus 164 ~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-------~~~~~lv~~~~~~~~~~i~~~t~~G~ 236 (276)
T 3no0_A 164 KNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-------GTKDTLVDLIPIKEEVELLITTKNGK 236 (276)
T ss_dssp TTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-------CSSSCEEEEEEESSEEEEEEEETTSC
T ss_pred CCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-------cCCCcEEEEEEeCCCCEEEEEcCCCe
Confidence 22346555543 3467888999988887766554433321111111 1223555442 3456677777 888
Q ss_pred EEE
Q 016197 361 ILT 363 (393)
Q Consensus 361 v~~ 363 (393)
+.-
T Consensus 237 ~ir 239 (276)
T 3no0_A 237 AFY 239 (276)
T ss_dssp EEE
T ss_pred EEE
Confidence 877
No 58
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=80.57 E-value=28 Score=30.25 Aligned_cols=204 Identities=11% Similarity=-0.047 Sum_probs=104.4
Q ss_pred CCceeEEEeCCC--eeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcC--Cc-eEEEEecCCcE
Q 016197 70 KHSLKALACGGA--HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG--YH-HSSAITVDGEL 144 (393)
Q Consensus 70 ~~~I~~I~~G~~--~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g--~~-~~~~lt~~G~v 144 (393)
...|..++...+ +.+.-..+|.|++|-.... .....+..+......|..++.. .. ..+.-..+|.|
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 81 (342)
T 1yfq_A 11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQ---------AKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETT---------TTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCC---------CccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeE
Confidence 345777766543 4444567899999964321 1111222233344467666653 44 56777788999
Q ss_pred EEEec-CCCCCCCCCCCCCcccccCeEecc-CCCceEEEEecC-CceEEEEeCCCcEEEEeCCCCCCCCCCCCCCccccc
Q 016197 145 YMWGK-NSNGQLGLGKKAAKVIPIPTKVEC-LSGIFTKQAALG-FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFL 221 (393)
Q Consensus 145 y~~G~-n~~gqlg~~~~~~~~~~~~~~~~~-~~~~~i~~i~~g-~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~ 221 (393)
+.|-. .. +++ ..+.. .....|..++.. ....+....+|.|..|-...... .. .
T Consensus 82 ~~wd~~~~-~~~-------------~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~---~---- 137 (342)
T 1yfq_A 82 LKVDLIGS-PSF-------------QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD---GV---I---- 137 (342)
T ss_dssp EEECSSSS-SSE-------------EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTT---BC---E----
T ss_pred EEEEeccC-Cce-------------EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEccccccc---cc---c----
Confidence 99955 32 111 11111 012234444432 56666778899999995321000 00 0
Q ss_pred cccccccce-eeccccCccEEEEEeCCceeEEEecCCcEEEEeCCCCCccccCCCCCcCCCccccCCCCcceEEeeC---
Q 016197 222 RSTSEYTPR-LIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGG--- 297 (393)
Q Consensus 222 ~~~~~~~p~-~i~~~~~~~i~~i~~g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~v~~v~~g~--- 297 (393)
.....+. .+. ....+..++...+..++.+.+|.|+.|-....+.. ............|..++...
T Consensus 138 --~~~~~~~~~~~--~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-------~~~~~~~~~~~~i~~i~~~~~~~ 206 (342)
T 1yfq_A 138 --AVKNLNSNNTK--VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD-------NGTIEESGLKYQIRDVALLPKEQ 206 (342)
T ss_dssp --EEEESCSSSSS--SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTC-------CCEEEECSCSSCEEEEEECSGGG
T ss_pred --cccCCeeeEEe--eCCceEEEEecCCcEEEEeCCCeEEEEECCccccc-------cceeeecCCCCceeEEEECCCCC
Confidence 0000000 011 12357777777777777788999999975431110 00000111112355555543
Q ss_pred ceeEEEEcCCCEEEEeCCCC
Q 016197 298 YHTCVLTSGGELYTWGSNEN 317 (393)
Q Consensus 298 ~~~~~lt~~g~v~~~G~n~~ 317 (393)
...++-..+|.|..|-....
T Consensus 207 ~~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 207 EGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp CEEEEEETTSEEEEEECCTT
T ss_pred CEEEEEecCCcEEEEEEcCC
Confidence 45555678888888876543
No 59
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=80.42 E-value=51 Score=33.10 Aligned_cols=203 Identities=11% Similarity=-0.030 Sum_probs=104.3
Q ss_pred CCceeEEEeC----CCeeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcC----CceEEEEecC
Q 016197 70 KHSLKALACG----GAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG----YHHSSAITVD 141 (393)
Q Consensus 70 ~~~I~~I~~G----~~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g----~~~~~~lt~~ 141 (393)
...|..|+.. ..+.+.-..||.|++|-.... .......+......|..++.. ....+.-+.+
T Consensus 53 ~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~----------~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d 122 (753)
T 3jro_A 53 EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG----------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 122 (753)
T ss_dssp SSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETT----------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred cCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCC----------cccccccccCCCCCeEEEEECCCCCCCEEEEEeCC
Confidence 3568888875 345566688999999964321 111222222234478887765 3467777889
Q ss_pred CcEEEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecC---------------CceEEEEeCCCcEEEEeCCCC
Q 016197 142 GELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG---------------FEQSVAVTGGGKVLSWGAGGS 206 (393)
Q Consensus 142 G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g---------------~~~s~~lt~~G~v~~~G~n~~ 206 (393)
|.|+.|-...... .....+.. ....|..+... ....+.-..+|.|..|-....
T Consensus 123 g~I~vwdl~~~~~-----------~~~~~~~~-~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~ 190 (753)
T 3jro_A 123 GKVSVVEFKENGT-----------TSPIIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD 190 (753)
T ss_dssp SEEEEEECCSSSC-----------CCCEEEEC-CSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETT
T ss_pred CcEEEEEeecCCC-----------cceeEeec-CCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCC
Confidence 9999997643211 11111111 11234444433 345566678899999954321
Q ss_pred CCCCCCCCCCccccccccccccceeeccccCccEEEEEeCC-----ceeEEEecCCcEEEEeCCCCCccccCCCCCcCCC
Q 016197 207 GRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGF-----LHSACIDENGRVYIFGDRAVDKMLFQEGNHARRP 281 (393)
Q Consensus 207 gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~-----~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p 281 (393)
. ....+..........|..++... ...+....+|.|+.|-........ .....
T Consensus 191 ~-----------------~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~-----~~~~~ 248 (753)
T 3jro_A 191 A-----------------QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPW-----KKTLL 248 (753)
T ss_dssp T-----------------TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCC-----BCCBS
T ss_pred c-----------------ccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcc-----eeEEe
Confidence 0 00011111011123566666653 345566788999999654321000 00000
Q ss_pred ccccCCCCcceEEeeC--ceeEEEEcCCCEEEEeCCC
Q 016197 282 SLISKLPYSEEVVCGG--YHTCVLTSGGELYTWGSNE 316 (393)
Q Consensus 282 ~~i~~~~~v~~v~~g~--~~~~~lt~~g~v~~~G~n~ 316 (393)
........|..++... ...+.-..||.|+.|-.+.
T Consensus 249 ~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 249 KEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp SSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred ccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 0001112355555543 3444456889999998764
No 60
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=79.89 E-value=35 Score=30.89 Aligned_cols=187 Identities=10% Similarity=-0.051 Sum_probs=100.6
Q ss_pred eeEEEeCCCeeEEEecCCcEEEEecCCCeeccCCCCCCceecceEecc-CCCcEEEEEcC--CceEEEEecCCcEEEEec
Q 016197 73 LKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISG-LKKEVVQISTG--YHHSSAITVDGELYMWGK 149 (393)
Q Consensus 73 I~~I~~G~~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~-~~~~i~~i~~g--~~~~~~lt~~G~vy~~G~ 149 (393)
+..++......++...+|.|++|-..... ....+.. -...|..++.. ....++-..+|.|..|-.
T Consensus 96 ~~~~~~s~~~l~~~~~d~~v~lw~~~~~~------------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 163 (401)
T 4aez_A 96 LNLLDWSNLNVVAVALERNVYVWNADSGS------------VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV 163 (401)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTCC------------EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEEEeecCCCEEEEECCCeEEEeeCCCCc------------EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEEC
Confidence 44566667778888999999999754211 1111111 23367776653 345666677899999965
Q ss_pred CCCCCCCCCCCCCcccccCeEeccCCCceEEEEecCCceEEEEeCCCcEEEEeCCCCCCCCCCCCCCccccccccccccc
Q 016197 150 NSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTP 229 (393)
Q Consensus 150 n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p 229 (393)
.... ....+. .....|..++......+.-..+|.|+.|-...... ..
T Consensus 164 ~~~~-------------~~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------------------~~ 210 (401)
T 4aez_A 164 ESQT-------------KLRTMA-GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANH-------------------QI 210 (401)
T ss_dssp TTCC-------------EEEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC-------------------EE
T ss_pred cCCe-------------EEEEec-CCCCceEEEEECCCEEEEEcCCCCEEEEecccCcc-------------------ee
Confidence 3211 111111 12234677776666777778899999996532110 00
Q ss_pred eeeccccCccEEEEEeC--CceeEEEecCCcEEEEeCCCCCccccCCCCCcCCCccccCCCCcceEEeeC--ceeEEEE-
Q 016197 230 RLIKELEGVKVKIAAAG--FLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGG--YHTCVLT- 304 (393)
Q Consensus 230 ~~i~~~~~~~i~~i~~g--~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~v~~v~~g~--~~~~~lt- 304 (393)
..+. .....|..+... ....+.-..+|.|+.|-......+ .........|..++... .+.++..
T Consensus 211 ~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~----------~~~~~~~~~v~~~~~~p~~~~ll~~~~ 279 (401)
T 4aez_A 211 GTLQ-GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPK----------FTKTNHNAAVKAVAWCPWQSNLLATGG 279 (401)
T ss_dssp EEEE-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEE----------EEECCCSSCCCEEEECTTSTTEEEEEC
T ss_pred eEEc-CCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCcc----------EEecCCcceEEEEEECCCCCCEEEEec
Confidence 1111 112246666554 334555567899999965431110 00011122356666543 2333333
Q ss_pred --cCCCEEEEeCC
Q 016197 305 --SGGELYTWGSN 315 (393)
Q Consensus 305 --~~g~v~~~G~n 315 (393)
.|+.|..|-..
T Consensus 280 gs~d~~i~i~d~~ 292 (401)
T 4aez_A 280 GTMDKQIHFWNAA 292 (401)
T ss_dssp CTTTCEEEEEETT
T ss_pred CCCCCEEEEEECC
Confidence 48888888754
No 61
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=79.61 E-value=28 Score=32.10 Aligned_cols=98 Identities=8% Similarity=0.118 Sum_probs=59.7
Q ss_pred eeEEEeCCCeeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcCCceEEEEecCCcEEEEecCCC
Q 016197 73 LKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSN 152 (393)
Q Consensus 73 I~~I~~G~~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~ 152 (393)
|.+|++ ....+++.+++.|..|-..+..+ ...+..+...+.++.+-....++++.+|.|++|-....
T Consensus 90 V~~l~f-d~~~L~v~~~~~l~v~dv~sl~~------------~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~ 156 (388)
T 1xip_A 90 VIFVCF-HGDQVLVSTRNALYSLDLEELSE------------FRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTK 156 (388)
T ss_dssp EEEEEE-ETTEEEEEESSEEEEEESSSTTC------------EEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTC
T ss_pred eeEEEE-CCCEEEEEcCCcEEEEEchhhhc------------cCccceeecceeeEEecCCCEEEEECCCCEEEEEccCC
Confidence 999999 66677777889999986543211 11122233456666665556888899999999955321
Q ss_pred CCCCCCCCCCcccccCeEeccCCCceEEEEecCCceEEEEeCCCcEEEE
Q 016197 153 GQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSW 201 (393)
Q Consensus 153 gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~s~~lt~~G~v~~~ 201 (393)
. .. .+ ...|..|+-...-.++...+|++..|
T Consensus 157 ~------------~~--~~----~~~Vs~v~WSpkG~~vg~~dg~i~~~ 187 (388)
T 1xip_A 157 S------------TK--QL----AQNVTSFDVTNSQLAVLLKDRSFQSF 187 (388)
T ss_dssp C------------EE--EE----EESEEEEEECSSEEEEEETTSCEEEE
T ss_pred c------------cc--cc----cCCceEEEEcCCceEEEEcCCcEEEE
Confidence 0 00 11 12366666555555555666766665
No 62
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=79.54 E-value=34 Score=30.53 Aligned_cols=266 Identities=14% Similarity=0.036 Sum_probs=127.0
Q ss_pred cccceEEEEEEcCCCCCcCCCCCCCeeeeeee--------ccccCCceeEEEeCCC-eeEEEecCCcEEEEecCCCeecc
Q 016197 34 TLQRRFAALWGNGDYGRLGLGSLESRWRPVVC--------SAFEKHSLKALACGGA-HTLFLTETGCVYATGLNDFGQLG 104 (393)
Q Consensus 34 ~~~~~~v~~wG~n~~g~lG~~~~~~~~~p~~~--------~~~~~~~I~~I~~G~~-~~~~lt~~G~v~~wG~n~~g~lg 104 (393)
-+.||.+.+.+++...++-.+.......+... .......|.+|+...+ ..+.-..||.|.+|-....
T Consensus 38 fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~---- 113 (344)
T 4gqb_B 38 YRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWELDEN---- 113 (344)
T ss_dssp ECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEEEEEEECTT----
T ss_pred ECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEEEEEeccCC----
Confidence 34788888888766555543211000000000 0001234777776544 3444578899999954321
Q ss_pred CCCCCCceecceEeccCCCcEEEEEcCC--ceEEEEecCCcEEEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEE
Q 016197 105 ISENIGYSLEPLRISGLKKEVVQISTGY--HHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQA 182 (393)
Q Consensus 105 ~~~~~~~~~~p~~i~~~~~~i~~i~~g~--~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i 182 (393)
............-...|..|+... ...+.-..+|.|..|-..+. .....+.. -...|..+
T Consensus 114 ----~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~-------------~~~~~~~~-h~~~V~~~ 175 (344)
T 4gqb_B 114 ----ETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ-------------VVLSSYRA-HAAQVTCV 175 (344)
T ss_dssp ----SSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-------------EEEEEECC-CSSCEEEE
T ss_pred ----CceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC-------------cEEEEEcC-cCCceEEE
Confidence 111111111222234677776543 34555567888999954321 00011111 12235555
Q ss_pred ecCC---ceEEEEeCCCcEEEEeCCCCCCCCCCCCCCccccccccccccceeec-cccCccEEEEEeCC---ceeEEEec
Q 016197 183 ALGF---EQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIK-ELEGVKVKIAAAGF---LHSACIDE 255 (393)
Q Consensus 183 ~~g~---~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~-~~~~~~i~~i~~g~---~~~~~lt~ 255 (393)
+... ...+.-..+|.|..|-....... ..+. ......+..++... ...+.-..
T Consensus 176 ~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~--------------------~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~ 235 (344)
T 4gqb_B 176 AASPHKDSVFLSCSEDNRILLWDTRCPKPA--------------------SQIGCSAPGYLPTSLAWHPQQSEVFVFGDE 235 (344)
T ss_dssp EECSSCTTEEEEEETTSCEEEEETTSSSCE--------------------EECC----CCCEEEEEECSSCTTEEEEEET
T ss_pred EecCCCCCceeeecccccccccccccccee--------------------eeeecceeeccceeeeecCCCCcceEEecc
Confidence 5432 23344567899999954321100 0110 11122344444332 22333467
Q ss_pred CCcEEEEeCCCCCccccCCCCCcCCCccccC-CCCcceEEeeCc---eeEEEEcCCCEEEEeCCCCCCCCCCCCCCccCc
Q 016197 256 NGRVYIFGDRAVDKMLFQEGNHARRPSLISK-LPYSEEVVCGGY---HTCVLTSGGELYTWGSNENGCLGIGSIDVLHSP 331 (393)
Q Consensus 256 ~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~-~~~v~~v~~g~~---~~~~lt~~g~v~~~G~n~~gqlG~g~~~~~~~p 331 (393)
||.|..|-...... ...+.. ...|..|+...+ ..+.-..||.|..|-... +++
T Consensus 236 dg~v~~wd~~~~~~-----------~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~-~~~----------- 292 (344)
T 4gqb_B 236 NGTVSLVDTKSTSC-----------VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL-SEL----------- 292 (344)
T ss_dssp TSEEEEEESCC--C-----------CEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTC-CEE-----------
T ss_pred CCcEEEEECCCCcE-----------EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC-CcE-----------
Confidence 88888885432111 111222 224677776432 334466899999995432 111
Q ss_pred eeecCCCCCCCeEEEEeCCC-c-eEEE-E-CCcEEEEec
Q 016197 332 ERVQGPFSESPVDQVSCGWK-H-TAAI-S-EGKILTWGW 366 (393)
Q Consensus 332 ~~v~~~~~~~~i~~i~~G~~-~-t~~l-~-~g~v~~wG~ 366 (393)
..+.. -...|..++.-.. . .++- . |++|..|=.
T Consensus 293 ~~~~~--H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v 329 (344)
T 4gqb_B 293 FRSQA--HRDFVRDATWSPLNHSLLTTVGWDHQVVHHVV 329 (344)
T ss_dssp EEECC--CSSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred EEEcC--CCCCEEEEEEeCCCCeEEEEEcCCCeEEEEEC
Confidence 11111 2346888876532 2 3333 3 899999965
No 63
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=79.22 E-value=32 Score=30.09 Aligned_cols=161 Identities=7% Similarity=-0.099 Sum_probs=76.9
Q ss_pred CCceeEEEeCC--CeeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcC--CceEEEEecC----
Q 016197 70 KHSLKALACGG--AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVD---- 141 (393)
Q Consensus 70 ~~~I~~I~~G~--~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g--~~~~~~lt~~---- 141 (393)
...|..++... .+.+....||.|.+|-..... ....+. ....|..++.. ....++...+
T Consensus 74 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~ 140 (369)
T 3zwl_B 74 TGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQ------------CVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKN 140 (369)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC------------EEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTB
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc------------EEEEee-cCCCeEEEEEccCCCEEEEecCCccCC
Confidence 34677777753 345556788999999643211 111111 33456666543 3444555555
Q ss_pred -CcEEEEecCCCCCCCCCCCCCcccccCeEec-cCCCceEEEEec--CCceEEEEeCCCcEEEEeCCCCCCCCCCCCCCc
Q 016197 142 -GELYMWGKNSNGQLGLGKKAAKVIPIPTKVE-CLSGIFTKQAAL--GFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSI 217 (393)
Q Consensus 142 -G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~-~~~~~~i~~i~~--g~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~ 217 (393)
|.|+.|-.........-.... ......+. ......+..++. .....++-..+|.|+.|-.....
T Consensus 141 ~g~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------- 208 (369)
T 3zwl_B 141 PGSINIYEIERDSATHELTKVS--EEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY---------- 208 (369)
T ss_dssp CCEEEEEEEEECTTTCCEEEEC--SSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTT----------
T ss_pred CCEEEEEEecCCccceeecccc--cceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc----------
Confidence 888888754332111000000 00111111 111113444433 33455666788999998643210
Q ss_pred cccccccccccceeeccccCccEEEEEeCC--ceeEEEecCCcEEEEeCC
Q 016197 218 LGFLRSTSEYTPRLIKELEGVKVKIAAAGF--LHSACIDENGRVYIFGDR 265 (393)
Q Consensus 218 ~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~--~~~~~lt~~G~vy~wG~n 265 (393)
.+..........|..++... ...++...+|.|+.|-..
T Consensus 209 ----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~ 248 (369)
T 3zwl_B 209 ----------EYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVS 248 (369)
T ss_dssp ----------EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ----------EeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECC
Confidence 01111111123466665543 334555678888888543
No 64
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=79.14 E-value=32 Score=29.99 Aligned_cols=17 Identities=18% Similarity=0.255 Sum_probs=13.3
Q ss_pred CCceEEEECCcEEEEec
Q 016197 350 WKHTAAISEGKILTWGW 366 (393)
Q Consensus 350 ~~~t~~l~~g~v~~wG~ 366 (393)
..|++++.+++||+.|-
T Consensus 254 ~~~~~~~~~~~i~v~GG 270 (308)
T 1zgk_A 254 SALGITVHQGRIYVLGG 270 (308)
T ss_dssp BSCEEEEETTEEEEECC
T ss_pred cceEEEEECCEEEEEcC
Confidence 36677767999999985
No 65
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=77.82 E-value=13 Score=33.21 Aligned_cols=17 Identities=12% Similarity=-0.035 Sum_probs=13.0
Q ss_pred CceEEEECCcEEEEecC
Q 016197 351 KHTAAISEGKILTWGWG 367 (393)
Q Consensus 351 ~~t~~l~~g~v~~wG~~ 367 (393)
.|+++..+++||+.|-.
T Consensus 309 ~~~~~~~~~~i~v~GG~ 325 (357)
T 2uvk_A 309 YGVSLPWNNSLLIIGGE 325 (357)
T ss_dssp SSEEEEETTEEEEEEEE
T ss_pred cceeEEeCCEEEEEeee
Confidence 46666569999999963
No 66
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=77.42 E-value=37 Score=29.89 Aligned_cols=104 Identities=13% Similarity=0.076 Sum_probs=53.8
Q ss_pred eeeccccceEEEEEEcCCCCCcCCCCCCCeeeeeeeccccCCceeEEEeCCCeeE--EEecCCcEEEEecCCCeeccCCC
Q 016197 30 WISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTL--FLTETGCVYATGLNDFGQLGISE 107 (393)
Q Consensus 30 ~~~~~~~~~~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~I~~I~~G~~~~~--~lt~~G~v~~wG~n~~g~lg~~~ 107 (393)
++++.+.|+.|.+|=.....+.+ ....|.....-....|..++...+..+ .-..||.|.+|-....
T Consensus 41 ~l~sgs~D~~v~iWd~~~~~~~~-----~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~------- 108 (343)
T 2xzm_R 41 VLISGSRDKTVMIWKLYEEEQNG-----YFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTG------- 108 (343)
T ss_dssp EEEEEETTSCEEEEEECSSCCSS-----BSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSS-------
T ss_pred EEEEEcCCCEEEEEECCcCCccc-----ccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC-------
Confidence 34455566667777533211110 011222222223346777777655433 3457899999964321
Q ss_pred CCCceecceEeccCCCcEEEEEcC--CceEEEEecCCcEEEEecC
Q 016197 108 NIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELYMWGKN 150 (393)
Q Consensus 108 ~~~~~~~p~~i~~~~~~i~~i~~g--~~~~~~lt~~G~vy~~G~n 150 (393)
.....+..-...|..++.. ....+.-..++.|..|-..
T Consensus 109 -----~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~ 148 (343)
T 2xzm_R 109 -----TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL 148 (343)
T ss_dssp -----CEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS
T ss_pred -----cEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc
Confidence 1111222233467777654 3455666778999999653
No 67
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=76.92 E-value=40 Score=29.99 Aligned_cols=249 Identities=10% Similarity=-0.010 Sum_probs=119.4
Q ss_pred CCceeEEEeCC---CeeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcCC-----ceEEEEecC
Q 016197 70 KHSLKALACGG---AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY-----HHSSAITVD 141 (393)
Q Consensus 70 ~~~I~~I~~G~---~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g~-----~~~~~lt~~ 141 (393)
...|..++... ...+.-..+|.|.+|-..... +......+..+..+.... ...++-..+
T Consensus 99 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (408)
T 4a11_B 99 RYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ-------------TADVFNFEETVYSHHMSPVSTKHCLVAVGTRG 165 (408)
T ss_dssp SSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTE-------------EEEEEECSSCEEEEEECSSCSSCCEEEEEESS
T ss_pred CCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCc-------------cceeccCCCceeeeEeecCCCCCcEEEEEcCC
Confidence 35688887743 355566779999999653211 111111334555554432 256666788
Q ss_pred CcEEEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecCCc---eEEEEeCCCcEEEEeCCCCCCCCCCCCCCcc
Q 016197 142 GELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFE---QSVAVTGGGKVLSWGAGGSGRLGHGQESSIL 218 (393)
Q Consensus 142 G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~---~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~ 218 (393)
|.|+.|-...... ...+.. ....|..++.... ..+.-..+|.|..|-.......-......
T Consensus 166 ~~v~~~d~~~~~~-------------~~~~~~-~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~-- 229 (408)
T 4a11_B 166 PKVQLCDLKSGSC-------------SHILQG-HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQH-- 229 (408)
T ss_dssp SSEEEEESSSSCC-------------CEEECC-CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTT--
T ss_pred CeEEEEeCCCcce-------------eeeecC-CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccc--
Confidence 9999996542111 111111 1223555554332 24556789999999764432110000000
Q ss_pred ccccccccccceeeccccCccEEEEEeCC--ceeEEEecCCcEEEEeCCCCCccccCCCCCcCCCccccCCCCcceEE-e
Q 016197 219 GFLRSTSEYTPRLIKELEGVKVKIAAAGF--LHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVV-C 295 (393)
Q Consensus 219 ~~~~~~~~~~p~~i~~~~~~~i~~i~~g~--~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~v~~v~-~ 295 (393)
.......+..........|..++... ...++...+|.|+.|-.............. ...........+. .
T Consensus 230 ---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 302 (408)
T 4a11_B 230 ---NGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKV----CNNSKKGLKFTVSCG 302 (408)
T ss_dssp ---TTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCC----CCCCSSCCCCEECCS
T ss_pred ---ccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccc----cccccccceeEEecC
Confidence 00000000000011123566666643 355666789999999765422211100000 0000000111122 2
Q ss_pred eCceeEEEEcCCCEEEEeCCCCCCCCCCCCCCccCceeecCCCCCCCeEEEEeCCCc--eEEEE-CCcEEEEecC
Q 016197 296 GGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKH--TAAIS-EGKILTWGWG 367 (393)
Q Consensus 296 g~~~~~~lt~~g~v~~~G~n~~gqlG~g~~~~~~~p~~v~~~~~~~~i~~i~~G~~~--t~~l~-~g~v~~wG~~ 367 (393)
.....++...++.|+.|-....-. ...+. -....|..++..... .+.-. ||.|..|=..
T Consensus 303 ~~~~~~~~~~~~~i~v~d~~~~~~-----------~~~~~--~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 364 (408)
T 4a11_B 303 CSSEFVFVPYGSTIAVYTVYSGEQ-----------ITMLK--GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPS 364 (408)
T ss_dssp SSSCEEEEEETTEEEEEETTTCCE-----------EEEEC--CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEC
T ss_pred CCceEEEEecCCEEEEEECcCCcc-----------eeeec--cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCC
Confidence 234556667889999998643211 11111 123467777665543 33333 8999999774
No 68
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=76.67 E-value=42 Score=30.04 Aligned_cols=108 Identities=12% Similarity=0.095 Sum_probs=58.8
Q ss_pred CceeEEEeCC--CeeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcCCc-eEEEEecCCcEEEE
Q 016197 71 HSLKALACGG--AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYH-HSSAITVDGELYMW 147 (393)
Q Consensus 71 ~~I~~I~~G~--~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g~~-~~~~lt~~G~vy~~ 147 (393)
..|..++... .+.+.-..+|.|++|-.... .....+......|..++.... ..+....+|.|+.|
T Consensus 248 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~------------~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~ 315 (425)
T 1r5m_A 248 GPISVLEFNDTNKLLLSASDDGTLRIWHGGNG------------NSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLW 315 (425)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEECSSSB------------SCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEE
T ss_pred CceEEEEECCCCCEEEEEcCCCEEEEEECCCC------------ccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEE
Confidence 4566666543 34555567888999854321 111222223346766665333 66677788999999
Q ss_pred ecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecC--CceEEEEeCCCcEEEEeCC
Q 016197 148 GKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG--FEQSVAVTGGGKVLSWGAG 204 (393)
Q Consensus 148 G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g--~~~s~~lt~~G~v~~~G~n 204 (393)
-.... .....+. .....|..++.. ....++-..+|.|+.|-..
T Consensus 316 d~~~~-------------~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~ 360 (425)
T 1r5m_A 316 SLKQN-------------TLLALSI-VDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLK 360 (425)
T ss_dssp ETTTT-------------EEEEEEE-CTTCCEEEEEECTTSSEEEEEETTSCEEEEECH
T ss_pred ECCCC-------------cEeEecc-cCCccEEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence 65321 0111111 112235555443 4455666788999999653
No 69
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=76.49 E-value=43 Score=30.14 Aligned_cols=70 Identities=13% Similarity=0.144 Sum_probs=42.2
Q ss_pred cCCceeEEEeCCC--eeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcC--CceEEEEecCCcE
Q 016197 69 EKHSLKALACGGA--HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGEL 144 (393)
Q Consensus 69 ~~~~I~~I~~G~~--~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g--~~~~~~lt~~G~v 144 (393)
....|..++...+ +.+.-..||.|.+|-.... .....+..-...|..++.. ....+.-..+|.|
T Consensus 138 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v 205 (420)
T 3vl1_A 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG------------SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTI 205 (420)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC------------CCCEEEECCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred ccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCC------------cCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcE
Confidence 3456888877544 4445577899999965321 1112233334467666653 4455666778899
Q ss_pred EEEecC
Q 016197 145 YMWGKN 150 (393)
Q Consensus 145 y~~G~n 150 (393)
..|-..
T Consensus 206 ~iwd~~ 211 (420)
T 3vl1_A 206 RLWECG 211 (420)
T ss_dssp EEEETT
T ss_pred EEeECC
Confidence 999654
No 70
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=76.39 E-value=84 Score=33.40 Aligned_cols=190 Identities=13% Similarity=0.055 Sum_probs=89.4
Q ss_pred cEEEEEc--CCceEEEEecCCcEEEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecC-CceEEEEeCCCcEEE
Q 016197 124 EVVQIST--GYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG-FEQSVAVTGGGKVLS 200 (393)
Q Consensus 124 ~i~~i~~--g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g-~~~s~~lt~~G~v~~ 200 (393)
.|..++. -....+.-..+|.|..|-......+ .+. .....|..+... ....++...+|.|+.
T Consensus 1005 ~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~--------------~~~-~~~~~v~~~~~~~~~~l~~~~~dg~v~v 1069 (1249)
T 3sfz_A 1005 AVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV--------------FLQ-AHQETVKDFRLLQDSRLLSWSFDGTVKV 1069 (1249)
T ss_dssp CCCCEEECSSSSCEEEECSSSBEEEEETTTTEEE--------------CCB-CCSSCEEEEEECSSSEEEEEESSSEEEE
T ss_pred ceEEEEECCCCCEEEEEcCCCEEEEEECCCCceE--------------EEe-cCCCcEEEEEEcCCCcEEEEECCCcEEE
Confidence 4444443 3344555667889999965421100 000 111234444432 344566678899999
Q ss_pred EeCCCCCCCCCCCCCCccccccccccccceeeccccCccEEEEEeC--CceeEEEecCCcEEEEeCCCCCccccCCCCCc
Q 016197 201 WGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAG--FLHSACIDENGRVYIFGDRAVDKMLFQEGNHA 278 (393)
Q Consensus 201 ~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g--~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~ 278 (393)
|-...... ...+.. ....|..++.. ....+....+|.|+.|-......
T Consensus 1070 wd~~~~~~--------------------~~~~~~-~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~--------- 1119 (1249)
T 3sfz_A 1070 WNVITGRI--------------------ERDFTC-HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP--------- 1119 (1249)
T ss_dssp EETTTTCC--------------------CEEEEC-CSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSC---------
T ss_pred EECCCCce--------------------eEEEcc-cCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcce---------
Confidence 96532210 001110 01122222222 23344555677777774332111
Q ss_pred CCCccccC-CCCcceEEeeCc--eeEEEEcCCCEEEEeCCCCCCCCCCCCCCccCceeecC--CCCCCCeEEEEeCCCce
Q 016197 279 RRPSLISK-LPYSEEVVCGGY--HTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQG--PFSESPVDQVSCGWKHT 353 (393)
Q Consensus 279 ~~p~~i~~-~~~v~~v~~g~~--~~~~lt~~g~v~~~G~n~~gqlG~g~~~~~~~p~~v~~--~~~~~~i~~i~~G~~~t 353 (393)
...+.. ...|..++...+ ..+.-..||.|+.|-......+.. ..|..... ......|..++...+..
T Consensus 1120 --~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~------~~~~~~~~~~~~~~~~v~~l~fs~dg~ 1191 (1249)
T 3sfz_A 1120 --LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHS------CAPISVEEGTATHGGWVTDVCFSPDSK 1191 (1249)
T ss_dssp --SBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCC------CCCCC-------CCSCCCEEEECTTSS
T ss_pred --eeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEE------eccccccccccccCceEEEEEECCCCC
Confidence 011111 123555555443 334455778888887644222111 11111110 11234577777776666
Q ss_pred EEEE-CCcEEEEec
Q 016197 354 AAIS-EGKILTWGW 366 (393)
Q Consensus 354 ~~l~-~g~v~~wG~ 366 (393)
.+++ +|.|..|-.
T Consensus 1192 ~l~s~~g~v~vwd~ 1205 (1249)
T 3sfz_A 1192 TLVSAGGYLKWWNV 1205 (1249)
T ss_dssp CEEEESSSEEEBCS
T ss_pred EEEECCCeEEEEEC
Confidence 6666 899999975
No 71
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=74.38 E-value=46 Score=29.45 Aligned_cols=219 Identities=14% Similarity=0.097 Sum_probs=111.7
Q ss_pred CCeeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEE--EEcCCceEEEEecCCcEEEEecCCCCCCCC
Q 016197 80 GAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQ--ISTGYHHSSAITVDGELYMWGKNSNGQLGL 157 (393)
Q Consensus 80 ~~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~--i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~ 157 (393)
....+++|.+|.+--.--..+.....+ .....-..+. -.+.+.. ++.+.++.+++|+.|++|..-....-..+.
T Consensus 8 e~~~v~~T~~G~iKr~~~~~~~~~~~~---~~g~~~~~lk-e~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 8 ENIVVMLTKKGFLKRLSQNEYKLQGTG---GKGLSSFDLN-DGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp CEEEEEEETTCBEEEEEGGGSCBCCSS---CCCEECCCCC-TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC---
T ss_pred CCEEEEEeCCCEEEEeEHHHhhccccC---CCCceecccC-CCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCc
Confidence 345778899998765533322111000 0001111111 1123433 345778899999999999987754332222
Q ss_pred CCCCCcccccCeEeccCCCceEEEEecC-----CceEEEEeCCCcEEEEeCCCCCCCCCCCCCCccccccccccccceee
Q 016197 158 GKKAAKVIPIPTKVECLSGIFTKQAALG-----FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLI 232 (393)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~i~~i~~g-----~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i 232 (393)
... -.+....+...+++.|+.+... ..+.+++|++|.++-.-...+.... .. ....
T Consensus 84 ~~~---G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r-~~---------------G~~~ 144 (312)
T 1suu_A 84 ASK---GQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVK-SR---------------GVIV 144 (312)
T ss_dssp -------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC--------------------CEEC
T ss_pred cCC---CcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccC-CC---------------cEEE
Confidence 111 1122223334445567666543 4568889999999988654431110 00 0111
Q ss_pred ccc-cCccEEEEEe--CCceeEEEecCCcEEEEeCCCCCccccCCCCCcCCCccccCCCCcceEEe--eCceeEEEEcCC
Q 016197 233 KEL-EGVKVKIAAA--GFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVC--GGYHTCVLTSGG 307 (393)
Q Consensus 233 ~~~-~~~~i~~i~~--g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~v~~v~~--g~~~~~~lt~~g 307 (393)
..+ ++..++.+.. +....+++|++|.+..+-..+....+-.... ..-..+..-+.|..+.. ...+.++++++|
T Consensus 145 i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~G--v~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G 222 (312)
T 1suu_A 145 IKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQG--VCGMKLKEGDLFVKVLSVKENPYLLIVSENG 222 (312)
T ss_dssp BCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCC--EECCCCCTTCCEEEEEECTTCSEEEEEETTS
T ss_pred EecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCC--eEeEEeCCCCEEEEEEEECCCCeEEEEECCC
Confidence 111 2334554433 4567889999999988765543333221110 01111112223444433 345678889999
Q ss_pred CEEEEeCCCCCCCCCC
Q 016197 308 ELYTWGSNENGCLGIG 323 (393)
Q Consensus 308 ~v~~~G~n~~gqlG~g 323 (393)
.+-..-.+++-..+.+
T Consensus 223 ~~kr~~~~e~~~~~R~ 238 (312)
T 1suu_A 223 YGKRLNMSKISELKRG 238 (312)
T ss_dssp EEEEEEGGGSCBCCTT
T ss_pred ceEEEEHHHhcccCCC
Confidence 8887777766555543
No 72
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=74.27 E-value=46 Score=29.43 Aligned_cols=227 Identities=9% Similarity=0.025 Sum_probs=114.0
Q ss_pred cCCceeE--EEeCCCeeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcC-----CceEEEEecC
Q 016197 69 EKHSLKA--LACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG-----YHHSSAITVD 141 (393)
Q Consensus 69 ~~~~I~~--I~~G~~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g-----~~~~~~lt~~ 141 (393)
++..+.. ++.+.++.+++|+.|++|..-..+-...+.............+. ..+.|+.+... ..+.+++|++
T Consensus 45 e~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~ 123 (312)
T 1suu_A 45 DGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTAS 123 (312)
T ss_dssp TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-------CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETT
T ss_pred CCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCC
Confidence 3344544 44466778999999999988655322222111111111111222 23467766543 4568999999
Q ss_pred CcEEEEecCCCCCCCCCCCCCcccccCeE-eccCCCceEEEEe--cCCceEEEEeCCCcEEEEeCCCCCCCCCCCCCCcc
Q 016197 142 GELYMWGKNSNGQLGLGKKAAKVIPIPTK-VECLSGIFTKQAA--LGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSIL 218 (393)
Q Consensus 142 G~vy~~G~n~~gqlg~~~~~~~~~~~~~~-~~~~~~~~i~~i~--~g~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~ 218 (393)
|.++..-...+-.. . ..-.. +...++..++.+. .+..+.+++|++|.+..+-....-..|+....
T Consensus 124 G~~kr~~l~~~~~~---r------~~G~~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~G--- 191 (312)
T 1suu_A 124 GKIARFESTDFKAV---K------SRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQG--- 191 (312)
T ss_dssp SEEEEEEGGGGCC-------------CEECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCC---
T ss_pred CeEEEEEHHHhhcc---C------CCcEEEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCC---
Confidence 99999876543110 0 00011 1111233444443 35667889999999999877655444442210
Q ss_pred ccccccccccceeeccccCccEEEEEe--CCceeEEEecCCcEEEEeCCCCCccccCCCCCcCCCccc-cCCCCcce--E
Q 016197 219 GFLRSTSEYTPRLIKELEGVKVKIAAA--GFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLI-SKLPYSEE--V 293 (393)
Q Consensus 219 ~~~~~~~~~~p~~i~~~~~~~i~~i~~--g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i-~~~~~v~~--v 293 (393)
-+.+...++..++.+.. .....++++++|.+...-...+-..+-+.... ...... .....+.. +
T Consensus 192 ----------v~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~R~~kGv-~~~~~~k~~~~~lv~~~~ 260 (312)
T 1suu_A 192 ----------VCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGY-TSYKKSDKKAGSVVDAIA 260 (312)
T ss_dssp ----------EECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCTTCCCE-ECSCTTCTTTCSEEEEEE
T ss_pred ----------eEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccCCCCCCE-EeeEccCCCCCeEEEEEE
Confidence 11111122345555443 34457788888887766555443332221111 011111 01112322 2
Q ss_pred EeeCceeEEEEcCCCEEEEeCCCCCC
Q 016197 294 VCGGYHTCVLTSGGELYTWGSNENGC 319 (393)
Q Consensus 294 ~~g~~~~~~lt~~g~v~~~G~n~~gq 319 (393)
.......++++++|++.-.-.++...
T Consensus 261 ~~~~~~l~~~t~~g~~~r~~~~~i~~ 286 (312)
T 1suu_A 261 VSEDDEILLVSKRSKALRTVAGKVSE 286 (312)
T ss_dssp ECTTCEEEEEETTCEEEEEEGGGSCB
T ss_pred eCCCCEEEEEeCCCeEEEEEcccCCc
Confidence 22456677888888877666555433
No 73
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=74.10 E-value=48 Score=29.51 Aligned_cols=122 Identities=11% Similarity=0.059 Sum_probs=67.1
Q ss_pred CCceeEEEeCCCeeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcCC---------ceEEEEec
Q 016197 70 KHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY---------HHSSAITV 140 (393)
Q Consensus 70 ~~~I~~I~~G~~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g~---------~~~~~lt~ 140 (393)
...|..|+....+.+.-..||.|++|-..... ..........+..-...|..++... ...+....
T Consensus 16 ~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~ 89 (397)
T 1sq9_A 16 DADIFSVSACNSFTVSCSGDGYLKVWDNKLLD------NENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSF 89 (397)
T ss_dssp SSCEEEEEECSSEEEEEETTSEEEEEESBCCT------TCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred hcCeEEEEecCCeEEEEcCCCEEEEEECCCcc------cccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcC
Confidence 35788888888777777889999999754311 1111112233333344677776543 45555677
Q ss_pred CCcEEEEecCCCCCCCCCCCCCcccccCeEeccCC----CceEEEEecC------Cce-EEEEeCCCcEEEEeCCC
Q 016197 141 DGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLS----GIFTKQAALG------FEQ-SVAVTGGGKVLSWGAGG 205 (393)
Q Consensus 141 ~G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~----~~~i~~i~~g------~~~-s~~lt~~G~v~~~G~n~ 205 (393)
+|.|+.|-...... . .......+.... ...|..++.. ..+ .++...+|.|+.|-...
T Consensus 90 dg~i~iw~~~~~~~------~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 157 (397)
T 1sq9_A 90 SGDLLFYRITREDE------T--KKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP 157 (397)
T ss_dssp TSCEEEEEEEECTT------T--CCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred CCCEEEEEccCCcc------c--ccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCc
Confidence 89999996542110 0 000012222221 2345555544 444 55567889999996543
No 74
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=72.90 E-value=50 Score=29.19 Aligned_cols=157 Identities=13% Similarity=-0.006 Sum_probs=74.1
Q ss_pred CceeEEEeCCCeeEEE--ecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcCC--ceEEEEecCCcEEE
Q 016197 71 HSLKALACGGAHTLFL--TETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY--HHSSAITVDGELYM 146 (393)
Q Consensus 71 ~~I~~I~~G~~~~~~l--t~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g~--~~~~~lt~~G~vy~ 146 (393)
..|..|+...+..+++ ..||.|.+|-..... ......+..-...|..++... ...+.-..+|.|+.
T Consensus 12 ~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~----------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~v 81 (377)
T 3dwl_C 12 KPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG----------WKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYV 81 (377)
T ss_dssp SCCSCCEECSSSSEEECCCSSSCBCEEEEETTE----------EEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEE
T ss_pred CcEEEEEECCCCCEEEEecCCCEEEEEEccCCc----------eEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 3566666654443333 367888888543210 001111112233677766543 45666677899999
Q ss_pred EecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecC--CceEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccccccc
Q 016197 147 WGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG--FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRST 224 (393)
Q Consensus 147 ~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g--~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~ 224 (393)
|-..... ...+..........|..++.. ....+.-..+|.|..|-......
T Consensus 82 wd~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---------------- 134 (377)
T 3dwl_C 82 YEKRPDG-----------TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEND---------------- 134 (377)
T ss_dssp C-----------------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC---------------------
T ss_pred EEcCCCC-----------ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccc----------------
Confidence 8654211 011111111112246666543 34555667788888885432110
Q ss_pred ccccceeeccccCccEEEEEeCCc--eeEEEecCCcEEEEeCC
Q 016197 225 SEYTPRLIKELEGVKVKIAAAGFL--HSACIDENGRVYIFGDR 265 (393)
Q Consensus 225 ~~~~p~~i~~~~~~~i~~i~~g~~--~~~~lt~~G~vy~wG~n 265 (393)
......+.......|..++...+ ..+.-..+|.|..|-..
T Consensus 135 -~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 176 (377)
T 3dwl_C 135 -WWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAY 176 (377)
T ss_dssp -CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEEC
T ss_pred -ceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEE
Confidence 00111222111235666665433 44555678999999754
No 75
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=72.78 E-value=52 Score=29.33 Aligned_cols=224 Identities=10% Similarity=-0.035 Sum_probs=110.3
Q ss_pred EEeCCCeeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcC-----CceEEEEecCCcEEEEecC
Q 016197 76 LACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG-----YHHSSAITVDGELYMWGKN 150 (393)
Q Consensus 76 I~~G~~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g-----~~~~~~lt~~G~vy~~G~n 150 (393)
++.+.++.+++|+.|++|..-..+-...+..........-..+. -.+.|+.+..- ....+++|++|.+--.-..
T Consensus 46 ~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~ 124 (323)
T 1wp5_A 46 EMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELK 124 (323)
T ss_dssp EEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGG
T ss_pred EECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHH
Confidence 45567788999999999998765433222111111111111111 12367765432 3358889999988776543
Q ss_pred CCCCCCCCCCCCcccccCeE-eccCCCceEEE--EecCCceEEEEeCCCcEEEEeCCCCCCCCCCCCCCccccccccccc
Q 016197 151 SNGQLGLGKKAAKVIPIPTK-VECLSGIFTKQ--AALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEY 227 (393)
Q Consensus 151 ~~gqlg~~~~~~~~~~~~~~-~~~~~~~~i~~--i~~g~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~ 227 (393)
.+-.... ..... +...++..++. +..+.++.+++|++|+++.+-...--..|+....
T Consensus 125 e~~~~~r--------~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~G------------ 184 (323)
T 1wp5_A 125 HYKAQRY--------SKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAG------------ 184 (323)
T ss_dssp GGCCSCC--------SSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCC------------
T ss_pred Hhhhccc--------cCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcC------------
Confidence 3211100 00011 11112233333 3346778999999999999987655444442210
Q ss_pred cceeeccccCccEEEEEeC--Cc-eeEEEecCCcEEEEeCCCCCccccCCCCCcCCCccccCCC-CcceE--EeeCceeE
Q 016197 228 TPRLIKELEGVKVKIAAAG--FL-HSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLP-YSEEV--VCGGYHTC 301 (393)
Q Consensus 228 ~p~~i~~~~~~~i~~i~~g--~~-~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~-~v~~v--~~g~~~~~ 301 (393)
-..+...++..|+.+..- .. ..+.++++|.....-...+...+-+. .-...+..++.-. .+..+ ..+.+..+
T Consensus 185 -V~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~-kGv~~~~~~~~~~~~l~~~~~v~~~~~i~ 262 (323)
T 1wp5_A 185 -VKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAK-RGVVILRELKANPHRISGFVVAQDSDTIY 262 (323)
T ss_dssp -EECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTS-CCEECSCCCSSSCCCEEEEEEECTTCEEE
T ss_pred -EEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCC-CCEECeeecCCCCceEEEEEEeCCCCeEE
Confidence 011111223345555321 22 46667777764433222211111110 0011121121111 23322 23467788
Q ss_pred EEEcCCCEEEEeCCCCCCCCC
Q 016197 302 VLTSGGELYTWGSNENGCLGI 322 (393)
Q Consensus 302 ~lt~~g~v~~~G~n~~gqlG~ 322 (393)
+++++|++.-.-.++-...|.
T Consensus 263 ~it~~g~~ir~~~~~i~~~~R 283 (323)
T 1wp5_A 263 LQTEKSFIETIKVGDIRFSDR 283 (323)
T ss_dssp EEETTSCEEEEEGGGSCBCCS
T ss_pred EEeCCCeEEEEEhhhcCccCc
Confidence 999999998877666555444
No 76
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=71.93 E-value=12 Score=37.10 Aligned_cols=60 Identities=20% Similarity=0.357 Sum_probs=32.5
Q ss_pred eeEEEecCCcEEEEeCCCCCccccCCCCCcCCCccccCCCCcceEEeeCceeEEEEcCCCEEEEeC
Q 016197 249 HSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGS 314 (393)
Q Consensus 249 ~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~v~~v~~g~~~~~~lt~~g~v~~~G~ 314 (393)
++.++..+|+||.+|-.....+-.=+ ......+.+..+. ..-.+|++++..+|+||.+|.
T Consensus 246 ~~~~~~~~g~lyv~GG~~~~~v~~yd-~~t~~W~~~~~~~-----~~R~~~s~~~~~dg~iyv~GG 305 (656)
T 1k3i_A 246 PGISMDGNGQIVVTGGNDAKKTSLYD-SSSDSWIPGPDMQ-----VARGYQSSATMSDGRVFTIGG 305 (656)
T ss_dssp CEEEECTTSCEEEECSSSTTCEEEEE-GGGTEEEECCCCS-----SCCSSCEEEECTTSCEEEECC
T ss_pred ccccCCCCCCEEEeCCCCCCceEEec-CcCCceeECCCCC-----ccccccceEEecCCeEEEEeC
Confidence 34677789999999964322110000 0001111111111 123567777777999999997
No 77
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=71.31 E-value=52 Score=28.67 Aligned_cols=78 Identities=8% Similarity=0.119 Sum_probs=44.9
Q ss_pred ecceEeccCCCcEEEEEcCCc--eEEEEecCCcEEEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecC--Cce
Q 016197 113 LEPLRISGLKKEVVQISTGYH--HSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG--FEQ 188 (393)
Q Consensus 113 ~~p~~i~~~~~~i~~i~~g~~--~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g--~~~ 188 (393)
..+..+..-...|..++...+ ..+.-..+|.|+.|-..+. .....+.. ....|..++.. ..+
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-------------~~~~~~~~-h~~~v~~~~~~~~~~~ 88 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG-------------ERLGTLDG-HTGTIWSIDVDCFTKY 88 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTC-------------CEEEEECC-CSSCEEEEEECTTSSE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc-------------hhhhhhhh-cCCcEEEEEEcCCCCE
Confidence 455556655668888876543 4455567899999954321 01111111 12235555543 445
Q ss_pred EEEEeCCCcEEEEeCC
Q 016197 189 SVAVTGGGKVLSWGAG 204 (393)
Q Consensus 189 s~~lt~~G~v~~~G~n 204 (393)
.+....+|.|+.|-..
T Consensus 89 l~s~~~dg~i~iwd~~ 104 (369)
T 3zwl_B 89 CVTGSADYSIKLWDVS 104 (369)
T ss_dssp EEEEETTTEEEEEETT
T ss_pred EEEEeCCCeEEEEECC
Confidence 6666789999999653
No 78
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=68.14 E-value=65 Score=28.61 Aligned_cols=234 Identities=12% Similarity=0.066 Sum_probs=106.2
Q ss_pred CceeEEEeCCCeeEEEec--------CCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEc-CCceEEEEecC
Q 016197 71 HSLKALACGGAHTLFLTE--------TGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIST-GYHHSSAITVD 141 (393)
Q Consensus 71 ~~I~~I~~G~~~~~~lt~--------~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~-g~~~~~~lt~~ 141 (393)
..|..|+...+-.++++- ||.++.|-..... ...........-...|..++. .....++-..+
T Consensus 43 ~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~--------~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~d 114 (357)
T 4g56_B 43 VQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGA--------PNESLCTAGVQTEAGVTDVAWVSEKGILVASDS 114 (357)
T ss_dssp SEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC-----------CGGGCSEEEECSSCEEEEEEETTTEEEEEETT
T ss_pred CCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCC--------cceeEecccCCCCCCEEEEEEcCCCCEEEEECC
Confidence 457777766665555542 4567776432210 000111111112235776663 34455666778
Q ss_pred CcEEEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecC--CceEEEEeCCCcEEEEeCCCCCCCCCCCCCCccc
Q 016197 142 GELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG--FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILG 219 (393)
Q Consensus 142 G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g--~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~ 219 (393)
|.|..|-...... .........--...|..++.. ....+.-..+|.|..|-....
T Consensus 115 g~v~lWd~~~~~~----------~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~------------- 171 (357)
T 4g56_B 115 GAVELWEILEKES----------LLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK------------- 171 (357)
T ss_dssp SCEEEC------------------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTT-------------
T ss_pred CEEEEeeccccce----------eEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC-------------
Confidence 8888884322110 011111100112235555543 334445567888988854321
Q ss_pred cccccccccceeeccc--cCccEEEEEeCC---ceeEEEecCCcEEEEeCCCCCccccCCCCCcCCCccccCCCCcceEE
Q 016197 220 FLRSTSEYTPRLIKEL--EGVKVKIAAAGF---LHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVV 294 (393)
Q Consensus 220 ~~~~~~~~~p~~i~~~--~~~~i~~i~~g~---~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~v~~v~ 294 (393)
+.+..+ ....|..++... ...+....||.|..|-......+ ...........+..++
T Consensus 172 ----------~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~--------~~~~~~~~~~~v~~v~ 233 (357)
T 4g56_B 172 ----------AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPA--------TRIDFCASDTIPTSVT 233 (357)
T ss_dssp ----------EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCB--------CBCCCTTCCSCEEEEE
T ss_pred ----------cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCcee--------eeeeeccccccccchh
Confidence 111111 122466666532 23455567889998843221100 0000001111255565
Q ss_pred eeC--ceeEE-EEcCCCEEEEeCCCCCCCCCCCCCCccCceeecCCCCCCCeEEEEeCCC--ceEE-EE-CCcEEEEec
Q 016197 295 CGG--YHTCV-LTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWK--HTAA-IS-EGKILTWGW 366 (393)
Q Consensus 295 ~g~--~~~~~-lt~~g~v~~~G~n~~gqlG~g~~~~~~~p~~v~~~~~~~~i~~i~~G~~--~t~~-l~-~g~v~~wG~ 366 (393)
... .+.++ -..|+.|..|-.... + ....+. .....|..++.... ..++ -. |+.|..|=.
T Consensus 234 ~sp~~~~~la~g~~d~~i~~wd~~~~-~----------~~~~~~--~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~ 299 (357)
T 4g56_B 234 WHPEKDDTFACGDETGNVSLVNIKNP-D----------SAQTSA--VHSQNITGLAYSYHSSPFLASISEDCTVAVLDA 299 (357)
T ss_dssp ECTTSTTEEEEEESSSCEEEEESSCG-G----------GCEEEC--CCSSCEEEEEECSSSSCCEEEEETTSCEEEECT
T ss_pred hhhcccceEEEeecccceeEEECCCC-c----------EeEEEe--ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEEC
Confidence 532 23333 467888988865321 1 111121 13346777766432 2233 34 899999954
No 79
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=68.02 E-value=83 Score=29.75 Aligned_cols=221 Identities=15% Similarity=0.172 Sum_probs=105.4
Q ss_pred CceeEEEeCCC--eeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcC--CceEEEEecCCcEEE
Q 016197 71 HSLKALACGGA--HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELYM 146 (393)
Q Consensus 71 ~~I~~I~~G~~--~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g--~~~~~~lt~~G~vy~ 146 (393)
..|..++...+ ..+....||.|.+|-.+.. ....+......+..++.. ....+.-.++|.|..
T Consensus 304 ~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-------------~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~ 370 (577)
T 2ymu_A 304 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-------------HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 370 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTSC-------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-------------eeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 45777766544 3344467788888853211 112223333466666543 445566677888888
Q ss_pred EecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecC--CceEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccccccc
Q 016197 147 WGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG--FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRST 224 (393)
Q Consensus 147 ~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g--~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~ 224 (393)
|-.+ +++ ...+.. ....|..++.. ....+.-..++.|..|-.+ +++
T Consensus 371 ~~~~--~~~------------~~~~~~-~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~--~~~--------------- 418 (577)
T 2ymu_A 371 WNRN--GQL------------LQTLTG-HSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQL--------------- 418 (577)
T ss_dssp EETT--CCE------------EEEEEC-CSSCEEEEEECTTSSCEEEEETTSEEEEECTT--CCE---------------
T ss_pred EcCC--CCE------------EEEecC-CCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC--CCE---------------
Confidence 8532 110 111111 12235555433 3344555678888888421 100
Q ss_pred ccccceeeccccCccEEEEEeCCc--eeEEEecCCcEEEEeCCCCCccccCCCCCcCCCccccCCCCcceEEeeCc--ee
Q 016197 225 SEYTPRLIKELEGVKVKIAAAGFL--HSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGY--HT 300 (393)
Q Consensus 225 ~~~~p~~i~~~~~~~i~~i~~g~~--~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~v~~v~~g~~--~~ 300 (393)
...+.. ....|..++-..+ ..+....++.|..|-.+. ++ ..........|..++...+ ..
T Consensus 419 ----~~~~~~-~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~--~~---------~~~~~~~~~~v~~~~~spd~~~l 482 (577)
T 2ymu_A 419 ----LQTLTG-HSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG--QL---------LQTLTGHSSSVRGVAFSPDGQTI 482 (577)
T ss_dssp ----EEEEEC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTS--CE---------EEEEECCSSCEEEEEECTTSCEE
T ss_pred ----EEEecC-CCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC--CE---------EEEEcCCCCCEEEEEEcCCCCEE
Confidence 011111 1124555544332 333445778888885321 11 0011111223555655443 23
Q ss_pred EEEEcCCCEEEEeCCCCCCCCCCCCCCccCceeecCCCCCCCeEEEEeCCCce-EEE-E-CCcEEEEec
Q 016197 301 CVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHT-AAI-S-EGKILTWGW 366 (393)
Q Consensus 301 ~~lt~~g~v~~~G~n~~gqlG~g~~~~~~~p~~v~~~~~~~~i~~i~~G~~~t-~~l-~-~g~v~~wG~ 366 (393)
+.-..|+.|..|-.+ +++ ...+.. ....|..++...+.. ++. . ||.|..|=.
T Consensus 483 as~~~d~~i~iw~~~--~~~----------~~~~~~--h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 483 ASASDDKTVKLWNRN--GQL----------LQTLTG--HSSSVRGVAFSPDGQTIASASDDKTVKLWNR 537 (577)
T ss_dssp EEEETTSEEEEEETT--SCE----------EEEEEC--CSSCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred EEEeCCCEEEEEcCC--CCE----------EEEEeC--CCCCEEEEEEcCCCCEEEEEECcCEEEEEeC
Confidence 334577888888642 211 111221 234677776654332 333 3 788888854
No 80
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=68.00 E-value=67 Score=28.66 Aligned_cols=215 Identities=12% Similarity=0.025 Sum_probs=113.3
Q ss_pred eeeEeeeccccceEEEEEEcCCCCCcCCCCCCCeeeee--eeccccCCceeEEEeCC-----CeeEEEecCCcEEEEecC
Q 016197 26 ICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPV--VCSAFEKHSLKALACGG-----AHTLFLTETGCVYATGLN 98 (393)
Q Consensus 26 ~~~~~~~~~~~~~~v~~wG~n~~g~lG~~~~~~~~~p~--~~~~~~~~~I~~I~~G~-----~~~~~lt~~G~v~~wG~n 98 (393)
..+..++.-++.|.+|..-.. .|....-...-.|. .+...++++|+.+.... .+.+++|++|.+.-.--.
T Consensus 51 ~t~d~ll~fT~~Gr~y~~~~~---~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~ 127 (327)
T 3uc1_A 51 STHDLILFFTTQGRVYRAKAY---DLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLT 127 (327)
T ss_dssp ETTSEEEEEETTSEEEEEEGG---GSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGG
T ss_pred CCCCEEEEEeCCCeEEEEEHH---HCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHH
Confidence 344555555677777777633 23222112222332 23333678898887764 357888999988766543
Q ss_pred CCeeccCCCCCCceecceEeccCCCcEEE--EEcCCceEEEEecCCcEEEEecC--CCCCCCCCCCCCcccccCeEeccC
Q 016197 99 DFGQLGISENIGYSLEPLRISGLKKEVVQ--ISTGYHHSSAITVDGELYMWGKN--SNGQLGLGKKAAKVIPIPTKVECL 174 (393)
Q Consensus 99 ~~g~lg~~~~~~~~~~p~~i~~~~~~i~~--i~~g~~~~~~lt~~G~vy~~G~n--~~gqlg~~~~~~~~~~~~~~~~~~ 174 (393)
++.. .......-..+.. .+.++. ++.+.++.+++|++|++|.+-.. .--.+|....-. ..+...
T Consensus 128 ~~~~-----~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv------~~i~L~ 195 (327)
T 3uc1_A 128 DFDS-----NRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGV------QGMRFN 195 (327)
T ss_dssp GGCC-----CCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCE------ESSCCC
T ss_pred Hhhc-----cccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCe------eeecCC
Confidence 3211 0000111112221 224443 33477889999999999999876 443333322111 112233
Q ss_pred CCceEEEEecC--CceEEEEeCCCcEEEEeCCCCCCCCCCCCCCccccccccccccceeecccc-CccEEEEE--eCCce
Q 016197 175 SGIFTKQAALG--FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELE-GVKVKIAA--AGFLH 249 (393)
Q Consensus 175 ~~~~i~~i~~g--~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~-~~~i~~i~--~g~~~ 249 (393)
++..|+.+..- ..+.+++|++|.+.-.-...+...+++... + ..+...+ +..++.+. .+...
T Consensus 196 ~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G-~------------~~~~l~~~~d~lv~~~~~~~~~~ 262 (327)
T 3uc1_A 196 IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKG-V------------LTVMYDRRRGRLVGALIVDDDSE 262 (327)
T ss_dssp TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCC-E------------ESSCCCTTTCSEEEEEEECTTCE
T ss_pred CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCc-E------------EEEEecCCCCeEEEEEEeCCCcc
Confidence 45567766543 346788899998877655444333222110 0 0000000 11333332 35577
Q ss_pred eEEEecCCcEEEEeCCCCC
Q 016197 250 SACIDENGRVYIFGDRAVD 268 (393)
Q Consensus 250 ~~~lt~~G~vy~wG~n~~g 268 (393)
.+++|++|++..+-.....
T Consensus 263 i~l~T~~G~~ir~~~~~i~ 281 (327)
T 3uc1_A 263 LYAVTSGGGVIRTAARQVR 281 (327)
T ss_dssp EEEEEGGGCEEEEEGGGSC
T ss_pred EEEEcCCCeEEEEehhhcc
Confidence 8899999999887554433
No 81
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=67.58 E-value=65 Score=28.38 Aligned_cols=220 Identities=14% Similarity=0.039 Sum_probs=109.9
Q ss_pred EEeCCCeeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEc-----CCceEEEEecCCcEEEEecC
Q 016197 76 LACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIST-----GYHHSSAITVDGELYMWGKN 150 (393)
Q Consensus 76 I~~G~~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~-----g~~~~~~lt~~G~vy~~G~n 150 (393)
++.+.++.+++|+.|++|..-..+-...+.............+. -.+.|+.+.. .....+++|++|.+--.-..
T Consensus 49 ~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~ 127 (307)
T 1zi0_A 49 VANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLT 127 (307)
T ss_dssp EEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGG
T ss_pred EECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHH
Confidence 44567778999999999998765433222211111101111122 2346777644 23457888999988776543
Q ss_pred CCCCCCCCCCCCcccccCeE-eccCCCceEEEE--ecCCceEEEEeCCCcEEEEeCCCCCCCCCCCCCCccccccccccc
Q 016197 151 SNGQLGLGKKAAKVIPIPTK-VECLSGIFTKQA--ALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEY 227 (393)
Q Consensus 151 ~~gqlg~~~~~~~~~~~~~~-~~~~~~~~i~~i--~~g~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~ 227 (393)
.+-... ..... +...++..++.+ ..+..+.+++|++|+++-+-...-..+|+....
T Consensus 128 e~~~~~---------r~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~G------------ 186 (307)
T 1zi0_A 128 EFNRLR---------TAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG------------ 186 (307)
T ss_dssp GGTTCC---------TTCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCC------------
T ss_pred Hhhccc---------cCCeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCC------------
Confidence 221110 00101 111122334332 346678899999999999876554444432210
Q ss_pred cceeeccccCccEEEEEeC--CceeEEEecCCcEEEEeCCCCCccccCCCCCcCCCccccCCCCcceEEe--eCceeEEE
Q 016197 228 TPRLIKELEGVKVKIAAAG--FLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVC--GGYHTCVL 303 (393)
Q Consensus 228 ~p~~i~~~~~~~i~~i~~g--~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~v~~v~~--g~~~~~~l 303 (393)
...+...++..|+.+..- ....+++|++|.+--.-...+..-+-+. .-...+........+..+.. .....+++
T Consensus 187 -v~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~-kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~ 264 (307)
T 1zi0_A 187 -VRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRAT-KGVISIKVTERNGLVVGAVQVDDCDQIMMI 264 (307)
T ss_dssp -EECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTS-CCEESSCCCTTTCSEEEEEEECTTCEEEEE
T ss_pred -eEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCC-CCEEeeEecCCCCeEEEEEEeCCCceEEEE
Confidence 111222234456666432 2346777888765544322221111100 00111111111223444333 45668899
Q ss_pred EcCCCEEEEeCCCCCC
Q 016197 304 TSGGELYTWGSNENGC 319 (393)
Q Consensus 304 t~~g~v~~~G~n~~gq 319 (393)
|++|++.-+-.++-..
T Consensus 265 t~~g~~ir~~~~~i~~ 280 (307)
T 1zi0_A 265 TDAGTLVRTRVSEISI 280 (307)
T ss_dssp ESSCCEEEEEGGGSCB
T ss_pred cCCCcEEEEecccccc
Confidence 9999998877665433
No 82
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=67.20 E-value=1e+02 Score=30.62 Aligned_cols=190 Identities=11% Similarity=0.013 Sum_probs=95.8
Q ss_pred CceeEEEeCC--CeeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcCC--ceEEEEecCCcEEE
Q 016197 71 HSLKALACGG--AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY--HHSSAITVDGELYM 146 (393)
Q Consensus 71 ~~I~~I~~G~--~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g~--~~~~~lt~~G~vy~ 146 (393)
..|..++... ...++-..+|.|.+|-..... ....+......|..++... ...+.-..+|.|..
T Consensus 56 ~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 123 (814)
T 3mkq_A 56 TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE------------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123 (814)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC------------EEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred CcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc------------EEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEE
Confidence 4566666543 345555788999999654211 1122232344677766543 34556677899999
Q ss_pred EecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecC---CceEEEEeCCCcEEEEeCCCCCCCCCCCCCCccccccc
Q 016197 147 WGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG---FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRS 223 (393)
Q Consensus 147 ~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g---~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~ 223 (393)
|-..... .....+. .....|..++.. ....+....+|.|..|-.....
T Consensus 124 w~~~~~~------------~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~---------------- 174 (814)
T 3mkq_A 124 WNWENNW------------ALEQTFE-GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST---------------- 174 (814)
T ss_dssp EEGGGTS------------EEEEEEE-CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS----------------
T ss_pred EECCCCc------------eEEEEEc-CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc----------------
Confidence 9653210 1111111 112235555543 2345556778999999653210
Q ss_pred cccccceeeccccCccEEEEEe----CCceeEEEecCCcEEEEeCCCCCccccCCCCCcCCCcccc-CCCCcceEEeeCc
Q 016197 224 TSEYTPRLIKELEGVKVKIAAA----GFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLIS-KLPYSEEVVCGGY 298 (393)
Q Consensus 224 ~~~~~p~~i~~~~~~~i~~i~~----g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~-~~~~v~~v~~g~~ 298 (393)
....+.......+..+.. .....++...+|.|..|-..... ....+. ....|..++...+
T Consensus 175 ----~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-----------~~~~~~~~~~~v~~~~~~~~ 239 (814)
T 3mkq_A 175 ----PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS-----------CVATLEGHMSNVSFAVFHPT 239 (814)
T ss_dssp ----CSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE-----------EEEEEECCSSCEEEEEECSS
T ss_pred ----ceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc-----------EEEEEcCCCCCEEEEEEcCC
Confidence 011111111112333332 33445556678889998543211 111111 1223555555443
Q ss_pred --eeEEEEcCCCEEEEeCCC
Q 016197 299 --HTCVLTSGGELYTWGSNE 316 (393)
Q Consensus 299 --~~~~lt~~g~v~~~G~n~ 316 (393)
..+....||.|+.|-...
T Consensus 240 ~~~l~~~~~dg~v~vwd~~~ 259 (814)
T 3mkq_A 240 LPIIISGSEDGTLKIWNSST 259 (814)
T ss_dssp SSEEEEEETTSCEEEEETTT
T ss_pred CCEEEEEeCCCeEEEEECCC
Confidence 445566789999997543
No 83
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=66.88 E-value=78 Score=29.02 Aligned_cols=75 Identities=9% Similarity=-0.003 Sum_probs=46.9
Q ss_pred ecceEeccCCCcEEEEEcCCceEEEEecCCcEEEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecCCceEEEE
Q 016197 113 LEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAV 192 (393)
Q Consensus 113 ~~p~~i~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~s~~l 192 (393)
..|.....++. |.+|+. ....+++.++|.|..|-..+.-+. ......+ ..+..+.+-....+++
T Consensus 79 ~~~~~~~~lp~-V~~l~f-d~~~L~v~~~~~l~v~dv~sl~~~-------------~~~~~~~-~~v~~i~~~~p~~av~ 142 (388)
T 1xip_A 79 LTFKWEKEIPD-VIFVCF-HGDQVLVSTRNALYSLDLEELSEF-------------RTVTSFE-KPVFQLKNVNNTLVIL 142 (388)
T ss_dssp CCCSEEEECTT-EEEEEE-ETTEEEEEESSEEEEEESSSTTCE-------------EEEEECS-SCEEEEEECSSEEEEE
T ss_pred ccceEEeeCCC-eeEEEE-CCCEEEEEcCCcEEEEEchhhhcc-------------Cccceee-cceeeEEecCCCEEEE
Confidence 34533333776 999999 777777778999999865432211 1111111 1245555555557778
Q ss_pred eCCCcEEEEeC
Q 016197 193 TGGGKVLSWGA 203 (393)
Q Consensus 193 t~~G~v~~~G~ 203 (393)
+.+|.|+.|-.
T Consensus 143 ~~dG~L~v~dl 153 (388)
T 1xip_A 143 NSVNDLSALDL 153 (388)
T ss_dssp ETTSEEEEEET
T ss_pred ECCCCEEEEEc
Confidence 99999999954
No 84
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=66.05 E-value=79 Score=28.78 Aligned_cols=134 Identities=13% Similarity=0.063 Sum_probs=71.2
Q ss_pred CCceeEE--EeCCCeeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcC-----CceEEEEecCC
Q 016197 70 KHSLKAL--ACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG-----YHHSSAITVDG 142 (393)
Q Consensus 70 ~~~I~~I--~~G~~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g-----~~~~~~lt~~G 142 (393)
+..+..+ +.+.++.+++|+.|++|.+-..+-...+.............+. -.++|+.+..- ..+.+++|++|
T Consensus 45 ~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G 123 (370)
T 3l6v_A 45 EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNG 123 (370)
T ss_dssp CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTS
T ss_pred CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCC
Confidence 4445443 3455567888999999988754432222211111111111121 23477777652 34788999999
Q ss_pred cEEEEecCCCCCCCCCCCCCcccccCeEeccCCCceEE--EEecCCceEEEEeCCCcEEEEeCCCCCCCCCC
Q 016197 143 ELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTK--QAALGFEQSVAVTGGGKVLSWGAGGSGRLGHG 212 (393)
Q Consensus 143 ~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~--~i~~g~~~s~~lt~~G~v~~~G~n~~gqlg~~ 212 (393)
.+--.-...+-... ... .....+ .++..++ .+..+....+++|++|++.-+-...-..+|+.
T Consensus 124 ~vKrt~l~e~~~~~----~~G--~~ai~L--~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~ 187 (370)
T 3l6v_A 124 TVKKTPLSEFAFRL----ARG--KIAINL--DEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRT 187 (370)
T ss_dssp EEEEEEGGGGCSCC----TTC--EESSCC--CTTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTT
T ss_pred eEEEeEHHHhhccc----CCc--eEEEEe--CCCCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCC
Confidence 88776644332110 000 000011 1122333 33356678999999999998876655555544
No 85
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=65.32 E-value=72 Score=28.08 Aligned_cols=214 Identities=13% Similarity=0.034 Sum_probs=107.2
Q ss_pred EEcCCceEEEEecCCcEEEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEec-----CCceEEEEeCCCcEEEEe
Q 016197 128 ISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL-----GFEQSVAVTGGGKVLSWG 202 (393)
Q Consensus 128 i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~-----g~~~s~~lt~~G~v~~~G 202 (393)
++.+.++.+++|+.|++|..-...--..+... .-.+....+...+++.|+.+.. ...+.+++|++|.+.-.-
T Consensus 49 ~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a---~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~ 125 (307)
T 1zi0_A 49 VANTHDHILCFSSRGRVYSMKVYQLPEATRGA---RGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTV 125 (307)
T ss_dssp EEETTCEEEEEETTSEEEEEEGGGSCCCCSSS---CCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEE
T ss_pred EECCCCEEEEEECCCEEEEEEhhHCcCCCCCC---CCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEE
Confidence 45578889999999999999876543333211 1112222233334556766643 234578889999988765
Q ss_pred CCCCCCCCCCCCCCcccccccccccccee-eccccCccEEEE--EeCCceeEEEecCCcEEEEeCCCCCccccCCCCCcC
Q 016197 203 AGGSGRLGHGQESSILGFLRSTSEYTPRL-IKELEGVKVKIA--AAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHAR 279 (393)
Q Consensus 203 ~n~~gqlg~~~~~~~~~~~~~~~~~~p~~-i~~~~~~~i~~i--~~g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~ 279 (393)
...+..... .... +...++..++.+ ..+.+..+++|++|+++.+-...-..+|-.....
T Consensus 126 l~e~~~~~r----------------~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv-- 187 (307)
T 1zi0_A 126 LTEFNRLRT----------------AGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGV-- 187 (307)
T ss_dssp GGGGTTCCT----------------TCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCE--
T ss_pred HHHhhcccc----------------CCeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCe--
Confidence 433311110 0101 111112234433 2356778999999999988655433333211111
Q ss_pred CCccccCCCCcceEEee--CceeEEEEcCCCEEEEeCCCCCCCCCCCCCCccCceeecCCCCCCCeEEEEe--CCCceEE
Q 016197 280 RPSLISKLPYSEEVVCG--GYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSC--GWKHTAA 355 (393)
Q Consensus 280 ~p~~i~~~~~v~~v~~g--~~~~~~lt~~g~v~~~G~n~~gqlG~g~~~~~~~p~~v~~~~~~~~i~~i~~--G~~~t~~ 355 (393)
.-..+...+.|..+..- ....+++|++|.+--.-..++-.-+.+... ...+.... ...+++.+.. .....++
T Consensus 188 ~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG-~~~~~~~~---~~~~lv~~~~v~~~~~l~~ 263 (307)
T 1zi0_A 188 RGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKG-VISIKVTE---RNGLVVGAVQVDDCDQIMM 263 (307)
T ss_dssp ECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCC-EESSCCCT---TTCSEEEEEEECTTCEEEE
T ss_pred EeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCC-EEeeEecC---CCCeEEEEEEeCCCceEEE
Confidence 01122222345555432 234677788876555444333222222111 11111111 1235555433 4455677
Q ss_pred EE-CCcEEEEec
Q 016197 356 IS-EGKILTWGW 366 (393)
Q Consensus 356 l~-~g~v~~wG~ 366 (393)
++ +|.+.-.-.
T Consensus 264 ~t~~g~~ir~~~ 275 (307)
T 1zi0_A 264 ITDAGTLVRTRV 275 (307)
T ss_dssp EESSCCEEEEEG
T ss_pred EcCCCcEEEEec
Confidence 77 888765443
No 86
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=65.26 E-value=67 Score=27.67 Aligned_cols=16 Identities=13% Similarity=0.364 Sum_probs=11.7
Q ss_pred ceEEEEeCCCcEEEEeC
Q 016197 187 EQSVAVTGGGKVLSWGA 203 (393)
Q Consensus 187 ~~s~~lt~~G~v~~~G~ 203 (393)
.|++++. +++||++|-
T Consensus 193 ~~~~~~~-~~~i~v~GG 208 (306)
T 3ii7_A 193 NHGLVFV-KDKIFAVGG 208 (306)
T ss_dssp SCEEEEE-TTEEEEECC
T ss_pred cceEEEE-CCEEEEEeC
Confidence 4566555 779999985
No 87
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=63.73 E-value=81 Score=28.11 Aligned_cols=202 Identities=8% Similarity=0.020 Sum_probs=97.6
Q ss_pred CCceeEEEeCC---CeeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcCC---ceEEEEecCCc
Q 016197 70 KHSLKALACGG---AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY---HHSSAITVDGE 143 (393)
Q Consensus 70 ~~~I~~I~~G~---~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g~---~~~~~lt~~G~ 143 (393)
...|..|+... ...+.-..||.|++|-......... ......+.........|..++... ...+.-..+|.
T Consensus 113 ~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 189 (416)
T 2pm9_A 113 SSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPS---NYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNF 189 (416)
T ss_dssp SSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTT---TCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSC
T ss_pred ccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccc---cccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCC
Confidence 34677777753 3455556789999996543210000 000011111112233666666543 34455567889
Q ss_pred EEEEecCCCCCCCCCCCCCcccccCeEeccCC-----CceEEEEecCC---ceEEEEeCCC---cEEEEeCCCCCCCCCC
Q 016197 144 LYMWGKNSNGQLGLGKKAAKVIPIPTKVECLS-----GIFTKQAALGF---EQSVAVTGGG---KVLSWGAGGSGRLGHG 212 (393)
Q Consensus 144 vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~-----~~~i~~i~~g~---~~s~~lt~~G---~v~~~G~n~~gqlg~~ 212 (393)
|+.|-.... .....+.... ...|..++... ...+.-..+| .|+.|-.....+.
T Consensus 190 v~iwd~~~~-------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~--- 253 (416)
T 2pm9_A 190 ASIWDLKAK-------------KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP--- 253 (416)
T ss_dssp EEEEETTTT-------------EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC---
T ss_pred EEEEECCCC-------------CcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC---
Confidence 999965321 0111111110 23455555443 2444455666 7888855332100
Q ss_pred CCCCccccccccccccceeeccccCccEEEEEe---CCceeEEEecCCcEEEEeCCCCCccccCCCCCcCCCccccC-CC
Q 016197 213 QESSILGFLRSTSEYTPRLIKELEGVKVKIAAA---GFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK-LP 288 (393)
Q Consensus 213 ~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~---g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~-~~ 288 (393)
...+.......|..++. .....+.-..+|.|+.|-......+ ..+.. ..
T Consensus 254 ----------------~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~-----------~~~~~~~~ 306 (416)
T 2pm9_A 254 ----------------LQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQL-----------SQFPARGN 306 (416)
T ss_dssp ----------------SBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEE-----------EEEECSSS
T ss_pred ----------------cEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccc-----------eeecCCCC
Confidence 00011011224666655 3455566678899999954321111 11111 12
Q ss_pred CcceEEeeCc---eeEEEEcCCCEEEEeCCCC
Q 016197 289 YSEEVVCGGY---HTCVLTSGGELYTWGSNEN 317 (393)
Q Consensus 289 ~v~~v~~g~~---~~~~lt~~g~v~~~G~n~~ 317 (393)
.|..++...+ ..+....||.|..|-....
T Consensus 307 ~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 307 WCFKTKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp CCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred ceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 3666666543 3444557888999987653
No 88
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=63.67 E-value=8.2 Score=34.10 Aligned_cols=17 Identities=35% Similarity=0.307 Sum_probs=12.9
Q ss_pred CCceEEEECCcEEEEec
Q 016197 350 WKHTAAISEGKILTWGW 366 (393)
Q Consensus 350 ~~~t~~l~~g~v~~wG~ 366 (393)
..|+++..++++|+.|-
T Consensus 198 ~~~~~~~~~~~iyv~GG 214 (318)
T 2woz_A 198 SMFGVAIHKGKIVIAGG 214 (318)
T ss_dssp BSCEEEEETTEEEEEEE
T ss_pred ccceEEEECCEEEEEcC
Confidence 45666666999999984
No 89
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=63.52 E-value=81 Score=28.04 Aligned_cols=217 Identities=10% Similarity=-0.098 Sum_probs=108.9
Q ss_pred EEcCCceEEEEecCCcEEEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecC-----CceEEEEeCCCcEEEEe
Q 016197 128 ISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG-----FEQSVAVTGGGKVLSWG 202 (393)
Q Consensus 128 i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g-----~~~s~~lt~~G~v~~~G 202 (393)
++.+.++.+++|+.|++|..-...--..+... .-.+....+...++.+|+.+..- ..+.+++|++|.+.-.-
T Consensus 46 ~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a---~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~ 122 (323)
T 1wp5_A 46 EMNTKDVLLLFTNKGNYLYCPVHELPDIRWKD---LGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTE 122 (323)
T ss_dssp EEETTSEEEEEETTSEEEEEEGGGSCBCCTTS---CCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEE
T ss_pred EECCCCEEEEEECCCEEEEEEHHHCcCCCCCC---CCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeE
Confidence 45578899999999999999876543333211 11222233333345566665432 33578889999988775
Q ss_pred CCCCCCCCCCCCCCccccccccccccceeeccccCccEEEE--EeCCceeEEEecCCcEEEEeCCCCCccccCCCCCcCC
Q 016197 203 AGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIA--AAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARR 280 (393)
Q Consensus 203 ~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i--~~g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~ 280 (393)
...+....+... ...+...++..++.+ ..+.+..+++|++|+++.+-...-...|-..... .
T Consensus 123 l~e~~~~~r~~G--------------~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV--~ 186 (323)
T 1wp5_A 123 LKHYKAQRYSKP--------------LTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGV--K 186 (323)
T ss_dssp GGGGCCSCCSSC--------------EECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCE--E
T ss_pred HHHhhhccccCc--------------eEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCE--E
Confidence 544322111000 001111112233332 3366788999999999988765543333211110 1
Q ss_pred CccccCCCCcceEEee--Cc-eeEEEEcCCCEEEEeCCCCCCCCCCCCCCccCceeecCCCCCCCeEEE--EeCCCceEE
Q 016197 281 PSLISKLPYSEEVVCG--GY-HTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQV--SCGWKHTAA 355 (393)
Q Consensus 281 p~~i~~~~~v~~v~~g--~~-~~~~lt~~g~v~~~G~n~~gqlG~g~~~~~~~p~~v~~~~~~~~i~~i--~~G~~~t~~ 355 (393)
-..+...+.|..+..- .. ..++++++|...-.-..++-.-+++.. -...+..+.. .+..++.+ ..+....++
T Consensus 187 ~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~k-Gv~~~~~~~~--~~~~l~~~~~v~~~~~i~~ 263 (323)
T 1wp5_A 187 GMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKR-GVVILRELKA--NPHRISGFVVAQDSDTIYL 263 (323)
T ss_dssp CCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSC-CEECSCCCSS--SCCCEEEEEEECTTCEEEE
T ss_pred EEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCC-CEECeeecCC--CCceEEEEEEeCCCCeEEE
Confidence 1112222335554332 22 567778887655544444433333211 1111211110 12244432 345566777
Q ss_pred EE-CCcEEEEec
Q 016197 356 IS-EGKILTWGW 366 (393)
Q Consensus 356 l~-~g~v~~wG~ 366 (393)
++ +|.+.-.-.
T Consensus 264 it~~g~~ir~~~ 275 (323)
T 1wp5_A 264 QTEKSFIETIKV 275 (323)
T ss_dssp EETTSCEEEEEG
T ss_pred EeCCCeEEEEEh
Confidence 77 887765443
No 90
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=61.24 E-value=78 Score=27.10 Aligned_cols=17 Identities=12% Similarity=0.112 Sum_probs=13.2
Q ss_pred CCceEEEECCcEEEEec
Q 016197 350 WKHTAAISEGKILTWGW 366 (393)
Q Consensus 350 ~~~t~~l~~g~v~~wG~ 366 (393)
..|+++..++++|+.|-
T Consensus 245 ~~~~~~~~~~~i~v~GG 261 (301)
T 2vpj_A 245 CYVGATVLRGRLYAIAG 261 (301)
T ss_dssp BSCEEEEETTEEEEECC
T ss_pred cceeEEEECCEEEEEcC
Confidence 35666666999999985
No 91
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=58.57 E-value=98 Score=27.37 Aligned_cols=187 Identities=9% Similarity=0.027 Sum_probs=92.1
Q ss_pred CceeEEEeCCCe--eEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcCCc---eEEEEecCCcEE
Q 016197 71 HSLKALACGGAH--TLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYH---HSSAITVDGELY 145 (393)
Q Consensus 71 ~~I~~I~~G~~~--~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g~~---~~~~lt~~G~vy 145 (393)
..|..|+...+- .+.-..||.|.+|-..... ....+..-...|..++.... ..+.-..||.|.
T Consensus 128 ~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~------------~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~ 195 (344)
T 4gqb_B 128 DIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQV------------VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRIL 195 (344)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTE------------EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEE
T ss_pred CCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc------------EEEEEcCcCCceEEEEecCCCCCceeeeccccccc
Confidence 457777765543 3334678889999543211 11122223347777776432 334456789999
Q ss_pred EEecCCCCCCCCCCCCCcccccCeEec-cCCCceEEEEecC---CceEEEEeCCCcEEEEeCCCCCCCCCCCCCCccccc
Q 016197 146 MWGKNSNGQLGLGKKAAKVIPIPTKVE-CLSGIFTKQAALG---FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFL 221 (393)
Q Consensus 146 ~~G~n~~gqlg~~~~~~~~~~~~~~~~-~~~~~~i~~i~~g---~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~ 221 (393)
.|-....-. . ..+. ......+..++.. ....+.-..+|.|..|-......
T Consensus 196 iwd~~~~~~------------~-~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~------------- 249 (344)
T 4gqb_B 196 LWDTRCPKP------------A-SQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC------------- 249 (344)
T ss_dssp EEETTSSSC------------E-EECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--C-------------
T ss_pred cccccccce------------e-eeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcE-------------
Confidence 995432100 0 0111 1112224444432 22333446788999985432100
Q ss_pred cccccccceeeccccCccEEEEEeCC---ceeEEEecCCcEEEEeCCCCCccccCCCCCcCCCccccC-CCCcceEEeeC
Q 016197 222 RSTSEYTPRLIKELEGVKVKIAAAGF---LHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK-LPYSEEVVCGG 297 (393)
Q Consensus 222 ~~~~~~~p~~i~~~~~~~i~~i~~g~---~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~-~~~v~~v~~g~ 297 (393)
...+.. ....|..++... ...+.-..||.|+.|-... +++ ..+.. ...|..|+...
T Consensus 250 -------~~~~~~-h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~-~~~-----------~~~~~H~~~V~~v~~sp 309 (344)
T 4gqb_B 250 -------VLSSAV-HSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL-SEL-----------FRSQAHRDFVRDATWSP 309 (344)
T ss_dssp -------CEEEEC-CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTC-CEE-----------EEECCCSSCEEEEEECS
T ss_pred -------EEEEcC-CCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC-CcE-----------EEEcCCCCCEEEEEEeC
Confidence 011111 122566776543 2334456899999994322 221 11111 22377777543
Q ss_pred c-eeEE--EEcCCCEEEEeCC
Q 016197 298 Y-HTCV--LTSGGELYTWGSN 315 (393)
Q Consensus 298 ~-~~~~--lt~~g~v~~~G~n 315 (393)
+ ..++ -..||.|..|--.
T Consensus 310 ~~~~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 310 LNHSLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp SSTTEEEEEETTSCEEEEECC
T ss_pred CCCeEEEEEcCCCeEEEEECC
Confidence 2 2233 3478999998653
No 92
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=56.93 E-value=1.3e+02 Score=28.31 Aligned_cols=218 Identities=15% Similarity=0.160 Sum_probs=104.2
Q ss_pred CceeEEEeCCC--eeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcC--CceEEEEecCCcEEE
Q 016197 71 HSLKALACGGA--HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELYM 146 (393)
Q Consensus 71 ~~I~~I~~G~~--~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g--~~~~~~lt~~G~vy~ 146 (393)
..|..++...+ +.+.-.++|.+.+|-.+. . ....+......|..++.. ....+.-..++.|+.
T Consensus 345 ~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~----------~---~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~ 411 (577)
T 2ymu_A 345 SSVWGVAFSPDGQTIASASDDKTVKLWNRNG----------Q---LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 411 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTC----------C---EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred CCEEEEEECCCCCEEEEEeCCCEEEEEcCCC----------C---EEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEE
Confidence 45666665433 444456778888885321 0 111222233467777654 334555677888998
Q ss_pred EecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecC--CceEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccccccc
Q 016197 147 WGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG--FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRST 224 (393)
Q Consensus 147 ~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g--~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~ 224 (393)
|-.+ +++ ...+.. ....|..++.. ....+.-..++.|..|-.+. +
T Consensus 412 ~~~~--~~~------------~~~~~~-~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~--~---------------- 458 (577)
T 2ymu_A 412 WNRN--GQL------------LQTLTG-HSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG--Q---------------- 458 (577)
T ss_dssp ECTT--CCE------------EEEEEC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTS--C----------------
T ss_pred EeCC--CCE------------EEEecC-CCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC--C----------------
Confidence 8432 110 111111 11235444433 33444456788888884311 0
Q ss_pred ccccceeeccccCccEEEEEeCCce--eEEEecCCcEEEEeCCCCCccccCCCCCcCCCcccc-CCCCcceEEeeCc--e
Q 016197 225 SEYTPRLIKELEGVKVKIAAAGFLH--SACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLIS-KLPYSEEVVCGGY--H 299 (393)
Q Consensus 225 ~~~~p~~i~~~~~~~i~~i~~g~~~--~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~-~~~~v~~v~~g~~--~ 299 (393)
....+.. ....|..++...+. .+.-..++.|..|-.. +++ ...+. ....|..++...+ +
T Consensus 459 ---~~~~~~~-~~~~v~~~~~spd~~~las~~~d~~i~iw~~~--~~~----------~~~~~~h~~~v~~l~~s~dg~~ 522 (577)
T 2ymu_A 459 ---LLQTLTG-HSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQL----------LQTLTGHSSSVRGVAFSPDGQT 522 (577)
T ss_dssp ---EEEEEEC-CSSCEEEEEECTTSCEEEEEETTSEEEEEETT--SCE----------EEEEECCSSCEEEEEECTTSSC
T ss_pred ---EEEEEcC-CCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC--CCE----------EEEEeCCCCCEEEEEEcCCCCE
Confidence 0011111 11245555554433 3334578888888532 111 01111 1224666665433 3
Q ss_pred eEEEEcCCCEEEEeCCCCCCCCCCCCCCccCceeecCCCCCCCeEEEEeCCC--ceEEEE-CCcEEEE
Q 016197 300 TCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWK--HTAAIS-EGKILTW 364 (393)
Q Consensus 300 ~~~lt~~g~v~~~G~n~~gqlG~g~~~~~~~p~~v~~~~~~~~i~~i~~G~~--~t~~l~-~g~v~~w 364 (393)
.+.-..||.|..|-.. +++ ...+.. ....|..++...+ ..+.-. |+.|..|
T Consensus 523 l~s~~~dg~v~lwd~~--~~~----------~~~~~~--h~~~v~~~~fs~dg~~l~s~~~D~~i~~W 576 (577)
T 2ymu_A 523 IASASDDKTVKLWNRN--GQL----------LQTLTG--HSSSVWGVAFSPDGQTIASASSDKTVKLW 576 (577)
T ss_dssp EEEEETTSEEEEECTT--SCE----------EEEEEC--CSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred EEEEECcCEEEEEeCC--CCE----------EEEEcC--CCCCEEEEEEcCCCCEEEEEeCCCEEEEe
Confidence 4445678889998531 111 111111 2236666665443 223333 7888877
No 93
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=56.78 E-value=1.1e+02 Score=27.22 Aligned_cols=67 Identities=15% Similarity=0.116 Sum_probs=39.4
Q ss_pred ceeEEEeCCC--eeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcC--CceEEEEecCCcEEEE
Q 016197 72 SLKALACGGA--HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELYMW 147 (393)
Q Consensus 72 ~I~~I~~G~~--~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g--~~~~~~lt~~G~vy~~ 147 (393)
.|..++...+ +.+.-..+|.|++|-.. + .....+......|..++.. ....+....+|.|+.|
T Consensus 110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~~~--~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 176 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVENGELRLWNKT--G-----------ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILW 176 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETT--S-----------CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEeCC--C-----------CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEE
Confidence 6777777644 44455678899999521 1 1112222233466666653 3445666778888888
Q ss_pred ecCC
Q 016197 148 GKNS 151 (393)
Q Consensus 148 G~n~ 151 (393)
-...
T Consensus 177 d~~~ 180 (425)
T 1r5m_A 177 NVIS 180 (425)
T ss_dssp ETTT
T ss_pred ECCC
Confidence 7543
No 94
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=56.72 E-value=98 Score=26.78 Aligned_cols=17 Identities=12% Similarity=0.143 Sum_probs=11.6
Q ss_pred ceEEEEeCCCcEEEEeCC
Q 016197 187 EQSVAVTGGGKVLSWGAG 204 (393)
Q Consensus 187 ~~s~~lt~~G~v~~~G~n 204 (393)
.|++++. +++||++|-.
T Consensus 189 ~~~~~~~-~~~iyv~GG~ 205 (315)
T 4asc_A 189 LFGATVH-DGRIIVAAGV 205 (315)
T ss_dssp SCEEEEE-TTEEEEEEEE
T ss_pred ceEEEEE-CCEEEEEecc
Confidence 4555544 6799999853
No 95
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=56.35 E-value=95 Score=26.53 Aligned_cols=16 Identities=19% Similarity=0.422 Sum_probs=11.5
Q ss_pred ceEEEEeCCCcEEEEeC
Q 016197 187 EQSVAVTGGGKVLSWGA 203 (393)
Q Consensus 187 ~~s~~lt~~G~v~~~G~ 203 (393)
.|++++. +++||++|-
T Consensus 152 ~~~~~~~-~~~iyv~GG 167 (301)
T 2vpj_A 152 GAGLVVA-SGVIYCLGG 167 (301)
T ss_dssp SCEEEEE-TTEEEEECC
T ss_pred cceEEEE-CCEEEEECC
Confidence 4555554 789999985
No 96
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=55.37 E-value=1e+02 Score=26.49 Aligned_cols=18 Identities=17% Similarity=0.267 Sum_probs=12.2
Q ss_pred CceeEEEEcCCCEEEEeCC
Q 016197 297 GYHTCVLTSGGELYTWGSN 315 (393)
Q Consensus 297 ~~~~~~lt~~g~v~~~G~n 315 (393)
..|.+++. +++||.+|..
T Consensus 239 ~~~~~~~~-~~~i~v~GG~ 256 (306)
T 3ii7_A 239 VTVKCAAV-GSIVYVLAGF 256 (306)
T ss_dssp SCCEEEEE-TTEEEEEECB
T ss_pred cceeEEEE-CCEEEEEeCc
Confidence 34555544 8899999964
No 97
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=55.00 E-value=1.2e+02 Score=27.37 Aligned_cols=68 Identities=13% Similarity=0.168 Sum_probs=38.2
Q ss_pred CceeEEEeCCC--eeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcC--CceEEEEecCCcEEE
Q 016197 71 HSLKALACGGA--HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELYM 146 (393)
Q Consensus 71 ~~I~~I~~G~~--~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g--~~~~~~lt~~G~vy~ 146 (393)
..|..|+...+ +.+.-..||.|.+|-......+ ..+..-...|..++.. ..+.+.-..++.|..
T Consensus 151 ~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~------------~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~ 218 (410)
T 1vyh_C 151 DSVQDISFDHSGKLLASCSADMTIKLWDFQGFECI------------RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKM 218 (410)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEE------------ECCCCCSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee------------EEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 45777766543 3333467888888854321110 1111223366666653 345666678999999
Q ss_pred EecC
Q 016197 147 WGKN 150 (393)
Q Consensus 147 ~G~n 150 (393)
|-..
T Consensus 219 wd~~ 222 (410)
T 1vyh_C 219 WEVQ 222 (410)
T ss_dssp EETT
T ss_pred EECC
Confidence 9654
No 98
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=53.76 E-value=1e+02 Score=26.17 Aligned_cols=122 Identities=7% Similarity=-0.087 Sum_probs=66.8
Q ss_pred CceeEEEeCCC--eeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcC----CceEEEEecCCcE
Q 016197 71 HSLKALACGGA--HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG----YHHSSAITVDGEL 144 (393)
Q Consensus 71 ~~I~~I~~G~~--~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g----~~~~~~lt~~G~v 144 (393)
..|..|+...+ +.+.-..||.|.+|-.... .........+......|..++.. ....+.-..+|.|
T Consensus 12 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 12 DLVHDVVYDFYGRHVATCSSDQHIKVFKLDKD--------TSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEEECSS--------SCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cceeEEEEcCCCCEEEEeeCCCeEEEEECCCC--------CCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 45777776544 3444467899999965321 11111122233344578888765 3456667889999
Q ss_pred EEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecC----CceEEEEeCCCcEEEEeCCC
Q 016197 145 YMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG----FEQSVAVTGGGKVLSWGAGG 205 (393)
Q Consensus 145 y~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g----~~~s~~lt~~G~v~~~G~n~ 205 (393)
..|-.+...... .. ....+..........|..++.. ....+....+|.|+.|-...
T Consensus 84 ~vwd~~~~~~~~----~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 143 (351)
T 3f3f_A 84 KLWEEDPDQEEC----SG-RRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALE 143 (351)
T ss_dssp EEEEECTTSCTT----SS-CSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSS
T ss_pred EEEecCCCcccc----cc-cCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCC
Confidence 999765321100 00 0001111111123346666655 34566678899999997544
No 99
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=51.34 E-value=22 Score=31.20 Aligned_cols=17 Identities=18% Similarity=0.217 Sum_probs=13.3
Q ss_pred CCceEEEECCcEEEEec
Q 016197 350 WKHTAAISEGKILTWGW 366 (393)
Q Consensus 350 ~~~t~~l~~g~v~~wG~ 366 (393)
..|+++..++++|+.|-
T Consensus 188 ~~~~~~~~~~~iyv~GG 204 (315)
T 4asc_A 188 SLFGATVHDGRIIVAAG 204 (315)
T ss_dssp BSCEEEEETTEEEEEEE
T ss_pred hceEEEEECCEEEEEec
Confidence 45677666999999985
No 100
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=50.60 E-value=1.2e+02 Score=25.87 Aligned_cols=109 Identities=8% Similarity=-0.073 Sum_probs=56.0
Q ss_pred CceeEEEeCCC--eeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcC--CceEEEEecCCcEEE
Q 016197 71 HSLKALACGGA--HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELYM 146 (393)
Q Consensus 71 ~~I~~I~~G~~--~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g--~~~~~~lt~~G~vy~ 146 (393)
..|..++.... +.+.-..||.|.+|-.... .....+......|..++.. ....+.-..+|.|..
T Consensus 108 ~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 175 (312)
T 4ery_A 108 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG------------KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 175 (312)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCEEEEETTTC------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC------------EEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Confidence 34655555443 3444467888888854321 1111222223366666553 334555677888999
Q ss_pred EecCCCCCCCCCCCCCcccccCeEeccCCCceEE--EEecCCceEEEEeCCCcEEEEeCC
Q 016197 147 WGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTK--QAALGFEQSVAVTGGGKVLSWGAG 204 (393)
Q Consensus 147 ~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~--~i~~g~~~s~~lt~~G~v~~~G~n 204 (393)
|-....- ....+.......+. .++-...+.++-+.+|.|..|-..
T Consensus 176 wd~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~ 222 (312)
T 4ery_A 176 WDTASGQ-------------CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 222 (312)
T ss_dssp EETTTCC-------------EEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred EECCCCc-------------eeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 8653210 01111111122233 333344566667788999999653
No 101
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=50.34 E-value=1.4e+02 Score=26.54 Aligned_cols=240 Identities=9% Similarity=-0.020 Sum_probs=113.6
Q ss_pred CceeEEEeCCCe--eEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcC---CceEEEEecCCcEE
Q 016197 71 HSLKALACGGAH--TLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG---YHHSSAITVDGELY 145 (393)
Q Consensus 71 ~~I~~I~~G~~~--~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g---~~~~~~lt~~G~vy 145 (393)
..|..++...+. .+.-..+|.|.+|-..... ........+......|..++.. ....+.-..+|.|+
T Consensus 68 ~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~--------~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 139 (416)
T 2pm9_A 68 SKFNDLDWSHNNKIIAGALDNGSLELYSTNEAN--------NAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIF 139 (416)
T ss_dssp SCEEEEEECSSSSCEEEEESSSCEEEECCSSTT--------SCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEE
T ss_pred CceEEEEECCCCCeEEEEccCCeEEEeeccccc--------ccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEE
Confidence 457777765443 3444678999999643210 0001112222233466666654 44566667789999
Q ss_pred EEecCCCCCCCCCCCCCcccccCeEec--cCCCceEEEEecC---CceEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccc
Q 016197 146 MWGKNSNGQLGLGKKAAKVIPIPTKVE--CLSGIFTKQAALG---FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF 220 (393)
Q Consensus 146 ~~G~n~~gqlg~~~~~~~~~~~~~~~~--~~~~~~i~~i~~g---~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~ 220 (393)
.|-......... ...+..+. ......|..++.. ....+.-..+|.|..|-.....
T Consensus 140 iwd~~~~~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~------------- 199 (416)
T 2pm9_A 140 IWDMNKCTESPS-------NYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK------------- 199 (416)
T ss_dssp BCBTTTTSSCTT-------TCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE-------------
T ss_pred EEECCCCccccc-------cccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC-------------
Confidence 996643210000 00000000 0011234444433 2344444678899999653210
Q ss_pred ccccccccceeecccc-----CccEEEEEeCCc---eeEEEecCC---cEEEEeCCCCCccccCCCCCcCCCcccc--CC
Q 016197 221 LRSTSEYTPRLIKELE-----GVKVKIAAAGFL---HSACIDENG---RVYIFGDRAVDKMLFQEGNHARRPSLIS--KL 287 (393)
Q Consensus 221 ~~~~~~~~p~~i~~~~-----~~~i~~i~~g~~---~~~~lt~~G---~vy~wG~n~~gqlg~~~~~~~~~p~~i~--~~ 287 (393)
....+.... ...|..++...+ ..+.-..++ .|+.|-.....+. ...+. ..
T Consensus 200 -------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~----------~~~~~~~~~ 262 (416)
T 2pm9_A 200 -------EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP----------LQTLNQGHQ 262 (416)
T ss_dssp -------EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC----------SBCCCSCCS
T ss_pred -------cceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC----------cEEeecCcc
Confidence 001111110 234666655433 344445565 7777754331100 01111 12
Q ss_pred CCcceEEee---CceeEEEEcCCCEEEEeCCCCCCCCCCCCCCccCceeecCCCCCCCeEEEEeCCCc--eEEEE--CCc
Q 016197 288 PYSEEVVCG---GYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKH--TAAIS--EGK 360 (393)
Q Consensus 288 ~~v~~v~~g---~~~~~~lt~~g~v~~~G~n~~gqlG~g~~~~~~~p~~v~~~~~~~~i~~i~~G~~~--t~~l~--~g~ 360 (393)
..|..++.. ....+.-..||.|..|-....-. ...+.. ....|..++..... .++.. |+.
T Consensus 263 ~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~-----------~~~~~~--~~~~v~~~~~s~~~~~~l~s~~~d~~ 329 (416)
T 2pm9_A 263 KGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQ-----------LSQFPA--RGNWCFKTKFAPEAPDLFACASFDNK 329 (416)
T ss_dssp SCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCE-----------EEEEEC--SSSCCCCEEECTTCTTEEEECCSSSE
T ss_pred CceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcc-----------ceeecC--CCCceEEEEECCCCCCEEEEEecCCc
Confidence 246666653 34556667789999996543110 111111 12345556555433 33333 789
Q ss_pred EEEEecCC
Q 016197 361 ILTWGWGG 368 (393)
Q Consensus 361 v~~wG~~~ 368 (393)
|..|-...
T Consensus 330 i~iw~~~~ 337 (416)
T 2pm9_A 330 IEVQTLQN 337 (416)
T ss_dssp EEEEESCC
T ss_pred EEEEEccC
Confidence 99998743
No 102
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=50.32 E-value=96 Score=26.88 Aligned_cols=17 Identities=24% Similarity=0.432 Sum_probs=11.6
Q ss_pred ceEEEEecCCcEEEEecC
Q 016197 133 HHSSAITVDGELYMWGKN 150 (393)
Q Consensus 133 ~~~~~lt~~G~vy~~G~n 150 (393)
.|+++. -+++||.+|-.
T Consensus 151 ~~~~~~-~~~~iyv~GG~ 167 (318)
T 2woz_A 151 GHNVIS-HNGMIYCLGGK 167 (318)
T ss_dssp SCEEEE-ETTEEEEECCE
T ss_pred ccEEEE-ECCEEEEEcCC
Confidence 345444 67899999853
No 103
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=48.66 E-value=1.3e+02 Score=25.69 Aligned_cols=122 Identities=11% Similarity=0.080 Sum_probs=68.9
Q ss_pred EcCCceEEEEecCCcEEEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecC--CceEEEEeCCCcEEEEeCCCC
Q 016197 129 STGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG--FEQSVAVTGGGKVLSWGAGGS 206 (393)
Q Consensus 129 ~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g--~~~s~~lt~~G~v~~~G~n~~ 206 (393)
+.+.++.+++|+.|++|..-....- .... .-.+....+...++..|+.+... ..+.+++|++|.+.-.-...+
T Consensus 41 ~~t~~~ll~~T~~Gr~~~~~~~elp---~~r~--~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~ 115 (256)
T 1zvt_A 41 GKSNQPVVFVDSTGRSYAIDPITLP---SARG--QGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDL 115 (256)
T ss_dssp EETTSCEEEEETTSEEEEECGGGSC---CSSS--CCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGG
T ss_pred eCCCCEEEEEeCCCeEEEEEHHHCC---CcCC--CCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHh
Confidence 4467789999999999998765421 1111 11122223344456678877663 445778899999887765444
Q ss_pred CCCCCCCCCCccccccccccccceeeccc-cCccEEEE--E-eCCceeEEEecCCcEEEEeCCCCCccc
Q 016197 207 GRLGHGQESSILGFLRSTSEYTPRLIKEL-EGVKVKIA--A-AGFLHSACIDENGRVYIFGDRAVDKML 271 (393)
Q Consensus 207 gqlg~~~~~~~~~~~~~~~~~~p~~i~~~-~~~~i~~i--~-~g~~~~~~lt~~G~vy~wG~n~~gqlg 271 (393)
-...... ..+..+ ++..++.+ . .+.+..+++|++|++..+-.+....+|
T Consensus 116 ~~~~r~G----------------~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~ei~~~g 168 (256)
T 1zvt_A 116 VARNRAG----------------KALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS 168 (256)
T ss_dssp CCCSTTC----------------EECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEEGGGSCBCS
T ss_pred cccCcCc----------------eEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEEHHHCCCcC
Confidence 2111111 011111 11122222 1 256778899999999888665544433
No 104
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=48.52 E-value=1.2e+02 Score=25.51 Aligned_cols=111 Identities=10% Similarity=-0.056 Sum_probs=58.2
Q ss_pred CceeEEEeCCCe--eEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcCCceEEEEecCCcEEEEe
Q 016197 71 HSLKALACGGAH--TLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWG 148 (393)
Q Consensus 71 ~~I~~I~~G~~~--~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G 148 (393)
..|..|+...+. .+.-..||.|.+|-...... ...+..-...+..++......+.-..++.+..|-
T Consensus 68 ~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~------------~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~ 135 (318)
T 4ggc_A 68 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR------------LRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHD 135 (318)
T ss_dssp CCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE------------EEEEECCSSCEEEEEEETTEEEEEETTSEEEEEE
T ss_pred CeEEEEEECCCCCEEEEEECCCcEEEeecCCcee------------EEEecCccceEEEeecCCCEEEEEecCCceEeee
Confidence 457777776554 33346789999996432211 1112222335556666556666666777777764
Q ss_pred cCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecCCceEEEEeCCCcEEEEeCC
Q 016197 149 KNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAG 204 (393)
Q Consensus 149 ~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~s~~lt~~G~v~~~G~n 204 (393)
..... .......................+.+.-..+|.|..|-..
T Consensus 136 ~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 180 (318)
T 4ggc_A 136 VRVAE-----------HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA 180 (318)
T ss_dssp TTSSS-----------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESS
T ss_pred cCCCc-----------eeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECC
Confidence 43210 1111111122222333344445566667788999999653
No 105
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=48.18 E-value=1.3e+02 Score=25.84 Aligned_cols=102 Identities=12% Similarity=0.038 Sum_probs=53.8
Q ss_pred EeeeccccceEEEEEEcCCCCCcCCCCCCCeeeeeeeccccCCceeEEEeCCCe--eEEEecCCcEEEEecCCCeeccCC
Q 016197 29 RWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAH--TLFLTETGCVYATGLNDFGQLGIS 106 (393)
Q Consensus 29 ~~~~~~~~~~~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~I~~I~~G~~~--~~~lt~~G~v~~wG~n~~g~lg~~ 106 (393)
.++++.+.|+.|..|=..... .....|.....-....|..++...+- .+.-..|+.|.+|-....
T Consensus 31 ~~l~s~s~D~~v~~W~~~~~~-------~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~------ 97 (319)
T 3frx_A 31 NLLLSASRDKTLISWKLTGDD-------QKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATG------ 97 (319)
T ss_dssp TEEEEEETTSEEEEEEEEEET-------TEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT------
T ss_pred cEEEEecCCccEEEecCCCCC-------ccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCC------
Confidence 356666778888888532110 11112222111123457666665543 344467888999964321
Q ss_pred CCCCceecceEeccCCCcEEEEEcCC--ceEEEEecCCcEEEEec
Q 016197 107 ENIGYSLEPLRISGLKKEVVQISTGY--HHSSAITVDGELYMWGK 149 (393)
Q Consensus 107 ~~~~~~~~p~~i~~~~~~i~~i~~g~--~~~~~lt~~G~vy~~G~ 149 (393)
.....+..-...|..++... ...+.-..|+.|..|-.
T Consensus 98 ------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~ 136 (319)
T 3frx_A 98 ------ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI 136 (319)
T ss_dssp ------EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEET
T ss_pred ------CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 11122333344677776543 34555567888999854
No 106
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=47.72 E-value=1.5e+02 Score=26.40 Aligned_cols=125 Identities=12% Similarity=-0.017 Sum_probs=53.6
Q ss_pred ceeEEEeCC---CeeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcC--CceEEEEecCCcEEE
Q 016197 72 SLKALACGG---AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELYM 146 (393)
Q Consensus 72 ~I~~I~~G~---~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g--~~~~~~lt~~G~vy~ 146 (393)
.+..++... .+.+.-..||.|.+|-......+..- .........-...|..++.. ....+.-..+|.|..
T Consensus 208 ~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~-----~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~ 282 (393)
T 1erj_A 208 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL-----DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKL 282 (393)
T ss_dssp CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEE-----C------CCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEee-----cccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 455665543 34444567888888854321110000 00000001122367777654 344555677899999
Q ss_pred EecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecCC--ceEEEEeCCCcEEEEeC
Q 016197 147 WGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGF--EQSVAVTGGGKVLSWGA 203 (393)
Q Consensus 147 ~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~--~~s~~lt~~G~v~~~G~ 203 (393)
|-................... ..+.. -...|..++... .+.+.-..+|.|+.|-.
T Consensus 283 wd~~~~~~~~~~~~~~~~~~~-~~~~~-h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~ 339 (393)
T 1erj_A 283 WNLQNANNKSDSKTPNSGTCE-VTYIG-HKDFVLSVATTQNDEYILSGSKDRGVLFWDK 339 (393)
T ss_dssp EEC---------------CEE-EEEEC-CSSCEEEEEECGGGCEEEEEETTSEEEEEET
T ss_pred EECCCCCCcccccCCCCCcce-EEEec-ccCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 975432211100000000000 01111 112355555443 34455567889999954
No 107
>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A
Probab=47.62 E-value=89 Score=23.65 Aligned_cols=104 Identities=14% Similarity=0.041 Sum_probs=55.1
Q ss_pred EEEeCCCeeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEE-cCCceEEEEecCCcEEEEecCCCC
Q 016197 75 ALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIS-TGYHHSSAITVDGELYMWGKNSNG 153 (393)
Q Consensus 75 ~I~~G~~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~-~g~~~~~~lt~~G~vy~~G~n~~g 153 (393)
--.|...+.+-+..||+|-......+ .........+. ..++.|. .-....+++..+|+||.--..
T Consensus 10 ~~~~~~g~~L~I~~dG~V~Gt~~~~~--------~~s~l~~~~v~---~G~V~I~g~~sg~yL~m~~~G~v~Gs~~~--- 75 (132)
T 3q7x_A 10 LRSTETGQFLRINPDGTVDGTRDRSD--------PGIQFQISPEG---NGEVLLRSTETGQFLRINPDGTVDGTRDR--- 75 (132)
T ss_dssp EEETTTCCEEEECTTSBEEEECCTTC--------GGGCEEEEEEE---TTEEEEEETTTCCEEEECTTSBEEEECC----
T ss_pred eeeccCcEEEEECCCCcEEeecCCCC--------CCcEEEEEecc---cCEEEEEEEcccEEEEECCCCCEeeccCC---
Confidence 33466677778888999986543210 01111222222 2344443 455667888999999974221
Q ss_pred CCCCCCCCCcccccCeEeccCCCceEEEEecCCceEEEEeCCCcEEEE
Q 016197 154 QLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSW 201 (393)
Q Consensus 154 qlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~s~~lt~~G~v~~~ 201 (393)
++................+..+..|. .+++.++|++|.-
T Consensus 76 -------s~ec~flE~~~~~~g~v~ikg~~sg~--YLamnk~G~lygs 114 (132)
T 3q7x_A 76 -------SDPGIQFQISPEGNGEVLLRSTETGQ--FLRINPDGTVDGT 114 (132)
T ss_dssp -------CCGGGCEEEEEEETTEEEEEETTTCC--EEEECTTSBEEEE
T ss_pred -------CCCceeEEEEeecCcEEEEEeccCCe--EEEECCCCcCcCC
Confidence 11111111111122223355555554 8899999999974
No 108
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=47.11 E-value=1.3e+02 Score=25.57 Aligned_cols=17 Identities=18% Similarity=0.200 Sum_probs=11.7
Q ss_pred ceEEEEeCCCcEEEEeCC
Q 016197 187 EQSVAVTGGGKVLSWGAG 204 (393)
Q Consensus 187 ~~s~~lt~~G~v~~~G~n 204 (393)
.|++++. ++++|++|-.
T Consensus 197 ~~~~~~~-~~~iyv~GG~ 213 (302)
T 2xn4_A 197 GAGVGVL-NNLLYAVGGH 213 (302)
T ss_dssp SCEEEEE-TTEEEEECCB
T ss_pred cccEEEE-CCEEEEECCC
Confidence 4555554 6899999853
No 109
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=46.41 E-value=1.6e+02 Score=26.39 Aligned_cols=110 Identities=12% Similarity=-0.001 Sum_probs=56.5
Q ss_pred CceeEEEeC----CCeeEEEecCCcEEEEecCCCeeccCCCCCCceecceEecc--CCCcEEEEEcC--CceEEEEecCC
Q 016197 71 HSLKALACG----GAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISG--LKKEVVQISTG--YHHSSAITVDG 142 (393)
Q Consensus 71 ~~I~~I~~G----~~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~--~~~~i~~i~~g--~~~~~~lt~~G 142 (393)
..+..+..- ....+.-..||.|.+|-.... .....+.. -...|..++.. ....+.-+.+|
T Consensus 169 ~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~------------~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg 236 (437)
T 3gre_A 169 EYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL------------ERLQIIENSPRHGAVSSICIDEECCVLILGTTRG 236 (437)
T ss_dssp CCEEEEEEEECSSCEEEEEEETTSEEEEEETTTC------------CEEEEEECCGGGCCEEEEEECTTSCEEEEEETTS
T ss_pred cCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC------------eeeEEEccCCCCCceEEEEECCCCCEEEEEcCCC
Confidence 345555422 345555678888888864321 11112221 12367777664 34455667889
Q ss_pred cEEEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEec----CCc--eEEEEeCCCcEEEEeCCC
Q 016197 143 ELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL----GFE--QSVAVTGGGKVLSWGAGG 205 (393)
Q Consensus 143 ~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~----g~~--~s~~lt~~G~v~~~G~n~ 205 (393)
.|..|-.... .....+.......|..+.. ..+ ..+.-..+|.|..|-...
T Consensus 237 ~i~iwd~~~~-------------~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 292 (437)
T 3gre_A 237 IIDIWDIRFN-------------VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK 292 (437)
T ss_dssp CEEEEETTTT-------------EEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTT
T ss_pred eEEEEEcCCc-------------cEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCC
Confidence 9999965321 0011111122335666632 222 333345678899997643
No 110
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=45.68 E-value=1.5e+02 Score=25.68 Aligned_cols=211 Identities=6% Similarity=-0.145 Sum_probs=98.7
Q ss_pred CCceeEEEeCC--CeeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcC--CceEEEEecCCcEE
Q 016197 70 KHSLKALACGG--AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELY 145 (393)
Q Consensus 70 ~~~I~~I~~G~--~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g--~~~~~~lt~~G~vy 145 (393)
...|..++... .+.+....||.|.+|-.... .......+......|..++.. ....+.-..+|.|+
T Consensus 52 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~ 121 (372)
T 1k8k_C 52 NGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR----------TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVIS 121 (372)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSCEEEEEEETT----------EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEE
T ss_pred CCcccEEEEeCCCCEEEEEcCCCeEEEEECCCC----------eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEE
Confidence 34577776653 34455567888988854221 001111122233467766653 34556667788898
Q ss_pred EEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecC--CceEEEEeCCCcEEEEeCCCCCCCCCCCCCCccccccc
Q 016197 146 MWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG--FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRS 223 (393)
Q Consensus 146 ~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g--~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~ 223 (393)
.|-...... ......+.......|..++.. ....+.-..+|.|+.|-...... ........ +.
T Consensus 122 i~d~~~~~~----------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~----~~ 186 (372)
T 1k8k_C 122 ICYFEQEND----------WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEV-EERPAPTP----WG 186 (372)
T ss_dssp EEEEETTTT----------EEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTT-SCCCCCBT----TB
T ss_pred EEEecCCCc----------ceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccc-cccccccc----cc
Confidence 886542110 001111111112345555543 34555567899999997532111 00000000 00
Q ss_pred cccccceeeccc--cCccEEEEEeCC--ceeEEEecCCcEEEEeCCCCCccccCCCCCcCCCccccC-CCCcceEEee-C
Q 016197 224 TSEYTPRLIKEL--EGVKVKIAAAGF--LHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK-LPYSEEVVCG-G 297 (393)
Q Consensus 224 ~~~~~p~~i~~~--~~~~i~~i~~g~--~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~-~~~v~~v~~g-~ 297 (393)
........+..+ ....|..+.... ...++...+|.|..|-......+ ..+.. ...|..++.. .
T Consensus 187 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-----------~~~~~~~~~v~~~~~~~~ 255 (372)
T 1k8k_C 187 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV-----------ATLASETLPLLAVTFITE 255 (372)
T ss_dssp SCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE-----------EEEECSSCCEEEEEEEET
T ss_pred cccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCcee-----------EEEccCCCCeEEEEEecC
Confidence 000011111111 122466665543 35555667888888854321111 11111 1134555443 3
Q ss_pred ceeEEEEcCCCEEEEeCCC
Q 016197 298 YHTCVLTSGGELYTWGSNE 316 (393)
Q Consensus 298 ~~~~~lt~~g~v~~~G~n~ 316 (393)
...++...++.|+.|-...
T Consensus 256 ~~~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 256 SSLVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp TEEEEEETTSSCEEEEEET
T ss_pred CCEEEEEeCCeEEEEEccC
Confidence 3455556788888777544
No 111
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=45.29 E-value=1.6e+02 Score=25.89 Aligned_cols=193 Identities=9% Similarity=0.015 Sum_probs=97.4
Q ss_pred CceeEEEeCCC---eeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcCC---ceEEEEecCCcE
Q 016197 71 HSLKALACGGA---HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY---HHSSAITVDGEL 144 (393)
Q Consensus 71 ~~I~~I~~G~~---~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g~---~~~~~lt~~G~v 144 (393)
..|..++...+ ..+.-..||.|.+|-.... ..............|..++... ...+.-..+|.|
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i 143 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQ----------NKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGAT 143 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTSCEEEEETTST----------TCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEE
T ss_pred CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCc----------ccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEE
Confidence 45777776554 3444567888999865321 0011111112334777777644 455666778999
Q ss_pred EEEecCCCCCCCCCCCCCcccccCeEeccCC--CceEEEE--ecCCceEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccc
Q 016197 145 YMWGKNSNGQLGLGKKAAKVIPIPTKVECLS--GIFTKQA--ALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF 220 (393)
Q Consensus 145 y~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~--~~~i~~i--~~g~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~ 220 (393)
..|-... . ....+.... ...|..+ +......+.-..+|.|+.|-... +
T Consensus 144 ~iwd~~~-~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~------------ 195 (383)
T 3ei3_B 144 TLRDFSG-S-------------VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG--H------------ 195 (383)
T ss_dssp EEEETTS-C-------------EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS--C------------
T ss_pred EEEECCC-C-------------ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC--C------------
Confidence 9996531 0 001111111 1123333 34445566667888999986410 0
Q ss_pred ccccccccceeeccccCccEEEEEeCCc---eeEEEecCCcEEEEeCCCCCccccCCCCCcCCCccccCCCCcceEEeeC
Q 016197 221 LRSTSEYTPRLIKELEGVKVKIAAAGFL---HSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGG 297 (393)
Q Consensus 221 ~~~~~~~~p~~i~~~~~~~i~~i~~g~~---~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~v~~v~~g~ 297 (393)
....+. .....|..++-..+ ..+.-..||.|..|-....... ......+.....|..++...
T Consensus 196 -------~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-------~~~~~~~~~~~~v~~~~~s~ 260 (383)
T 3ei3_B 196 -------EIFKEK-LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK-------NSYIAEMPHEKPVNAAYFNP 260 (383)
T ss_dssp -------EEEEEE-CSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST-------TCEEEEEECSSCEEEEEECT
T ss_pred -------EEEEec-cCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc-------cceEEEecCCCceEEEEEcC
Confidence 000111 11224666655443 3455567888888854431100 00001112223466666544
Q ss_pred ---ceeEEEEcCCCEEEEeCCC
Q 016197 298 ---YHTCVLTSGGELYTWGSNE 316 (393)
Q Consensus 298 ---~~~~~lt~~g~v~~~G~n~ 316 (393)
...++...||.|..|-...
T Consensus 261 ~~~~~l~~~~~d~~i~iwd~~~ 282 (383)
T 3ei3_B 261 TDSTKLLTTDQRNEIRVYSSYD 282 (383)
T ss_dssp TTSCEEEEEESSSEEEEEETTB
T ss_pred CCCCEEEEEcCCCcEEEEECCC
Confidence 4455566788899887654
No 112
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=44.50 E-value=2.3e+02 Score=27.60 Aligned_cols=276 Identities=11% Similarity=0.096 Sum_probs=0.0
Q ss_pred eeeccccceEEEEEEcCCCCCcCCCCCCCeeeeeeeccccCCceeEEEeCCCeeEEE--ecCCcEEEEecCCCeeccCCC
Q 016197 30 WISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFL--TETGCVYATGLNDFGQLGISE 107 (393)
Q Consensus 30 ~~~~~~~~~~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~I~~I~~G~~~~~~l--t~~G~v~~wG~n~~g~lg~~~ 107 (393)
++++.+.|+.|.+|=... .......+.....-....|..|+...+-.+++ ..||.|.+|
T Consensus 397 ~l~s~s~D~~i~~W~~~~-------~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vw------------ 457 (694)
T 3dm0_A 397 IIVSASRDKSIILWKLTK-------DDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLW------------ 457 (694)
T ss_dssp EEEEEETTSEEEEEECCC-------STTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE------------
T ss_pred EEEEEeCCCcEEEEEccC-------CCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEE------------
Q ss_pred CCCceecceEeccCCCcEEEEEcC--CceEEEEecCCcEEEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecC
Q 016197 108 NIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG 185 (393)
Q Consensus 108 ~~~~~~~p~~i~~~~~~i~~i~~g--~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g 185 (393)
..........+..-...|..++.. ....+.-..|+.|..| +...................|..+...
T Consensus 458 d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw-----------d~~~~~~~~~~~~~~~h~~~v~~~~~~ 526 (694)
T 3dm0_A 458 DLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLW-----------NTLGECKYTISEGGEGHRDWVSCVRFS 526 (694)
T ss_dssp ETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE-----------CTTSCEEEEECSSTTSCSSCEEEEEEC
T ss_pred ECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEE-----------ECCCCcceeeccCCCCCCCcEEEEEEe
Q ss_pred Cce----EEEEeCCCcEEEEeCCCCCCCCCCCCCCccccccccccccceeeccccCccEEEEEeCCceeEEEecCCcEEE
Q 016197 186 FEQ----SVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYI 261 (393)
Q Consensus 186 ~~~----s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G~vy~ 261 (393)
.+. .+.-..+|.|..|-.. ................-..+.......+.-..||.|..
T Consensus 527 ~~~~~~~l~s~s~d~~v~vwd~~-------------------~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~i 587 (694)
T 3dm0_A 527 PNTLQPTIVSASWDKTVKVWNLS-------------------NCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLL 587 (694)
T ss_dssp SCSSSCEEEEEETTSCEEEEETT-------------------TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEE
T ss_pred CCCCcceEEEEeCCCeEEEEECC-------------------CCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q ss_pred EeCCCCCccccCCCCCcCCCccccCCCCcceEEeeCc-eeEEEEcCCCEEEEeCCCCCCCCCCCCCCccCceeecCCCCC
Q 016197 262 FGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGY-HTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSE 340 (393)
Q Consensus 262 wG~n~~gqlg~~~~~~~~~p~~i~~~~~v~~v~~g~~-~~~~lt~~g~v~~~G~n~~gqlG~g~~~~~~~p~~v~~~~~~ 340 (393)
|-... ......+.....|..++...+ ..++...++.|..|-......+..-..............-..
T Consensus 588 wd~~~-----------~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (694)
T 3dm0_A 588 WDLAE-----------GKKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPA 656 (694)
T ss_dssp EETTT-----------TEEEECCBCSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC------------
T ss_pred EECCC-----------CceEEEecCCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccc
Q ss_pred CC------eEEEEeCCCceEEEE---CCcEEEEe
Q 016197 341 SP------VDQVSCGWKHTAAIS---EGKILTWG 365 (393)
Q Consensus 341 ~~------i~~i~~G~~~t~~l~---~g~v~~wG 365 (393)
.. +..++.......+++ ||.|..|.
T Consensus 657 ~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~ 690 (694)
T 3dm0_A 657 ATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWG 690 (694)
T ss_dssp ----CCCCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEe
No 113
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=44.01 E-value=1.7e+02 Score=25.81 Aligned_cols=17 Identities=12% Similarity=0.247 Sum_probs=13.2
Q ss_pred eCceeEEEEcCCCEEEE
Q 016197 296 GGYHTCVLTSGGELYTW 312 (393)
Q Consensus 296 g~~~~~~lt~~g~v~~~ 312 (393)
.....++.+.+|.||.+
T Consensus 358 ~~~~l~v~~~~G~l~~~ 374 (376)
T 3q7m_A 358 ADGKLLIQAKDGTVYSI 374 (376)
T ss_dssp ETTEEEEEBTTSCEEEE
T ss_pred ECCEEEEEeCCCEEEEE
Confidence 35677788888999876
No 114
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=43.60 E-value=1.9e+02 Score=26.23 Aligned_cols=123 Identities=15% Similarity=0.046 Sum_probs=69.1
Q ss_pred EEcCCceEEEEecCCcEEEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecC-----CceEEEEeCCCcEEEEe
Q 016197 128 ISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG-----FEQSVAVTGGGKVLSWG 202 (393)
Q Consensus 128 i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g-----~~~s~~lt~~G~v~~~G 202 (393)
++.+.++.+++|+.|++|.+-...--..+.... -.+....+...++.+|+.+..- ..+.+++|++|.+.-.-
T Consensus 53 ~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~---G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~ 129 (370)
T 3l6v_A 53 LVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNAR---GRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTP 129 (370)
T ss_dssp EECTTCEEEEEETTSEEEEEEGGGSCBCCTTSC---CEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEE
T ss_pred EecCCCEEEEEeCCCeEEEEEHHHCcCCCcccC---CcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeE
Confidence 345667789999999999987654333322111 1122222333455667776643 34788899999988776
Q ss_pred CCCCCCCCCCCCCCccccccccccccceeeccccCccEEE--EEeCCceeEEEecCCcEEEEeCCCCC
Q 016197 203 AGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKI--AAAGFLHSACIDENGRVYIFGDRAVD 268 (393)
Q Consensus 203 ~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~--i~~g~~~~~~lt~~G~vy~wG~n~~g 268 (393)
...+..... . .. ..+...++..++. +..+.+..+++|++|++..+-...-.
T Consensus 130 l~e~~~~~~-~--G~------------~ai~L~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~ 182 (370)
T 3l6v_A 130 LSEFAFRLA-R--GK------------IAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVR 182 (370)
T ss_dssp GGGGCSCCT-T--CE------------ESSCCCTTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSC
T ss_pred HHHhhcccC-C--ce------------EEEEeCCCCEEEEEEEeCCCceEEEEeCCCeEEEEEccccC
Confidence 544422110 0 00 0011111223333 33456788999999999887554433
No 115
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=38.87 E-value=1.8e+02 Score=24.63 Aligned_cols=107 Identities=7% Similarity=0.026 Sum_probs=55.7
Q ss_pred CceeEEEeCCCe--eEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcC--CceEEEEecCCcEEE
Q 016197 71 HSLKALACGGAH--TLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELYM 146 (393)
Q Consensus 71 ~~I~~I~~G~~~--~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g--~~~~~~lt~~G~vy~ 146 (393)
..|..++...+. .+.-..||.|.+|-..... ....+..-...|..++.. ....+.-..+|.|+.
T Consensus 66 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~i 133 (312)
T 4ery_A 66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK------------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 133 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCC------------EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEE
T ss_pred CceEEEEEcCCCCEEEEECCCCEEEEEECCCCc------------EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Confidence 457777765543 4444678899999643211 111222223356555543 344555677889999
Q ss_pred EecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEec--CCceEEEEeCCCcEEEEeC
Q 016197 147 WGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL--GFEQSVAVTGGGKVLSWGA 203 (393)
Q Consensus 147 ~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~--g~~~s~~lt~~G~v~~~G~ 203 (393)
|-..... ....+.. ....|..+.. .....+.-..+|.|..|-.
T Consensus 134 wd~~~~~-------------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~ 178 (312)
T 4ery_A 134 WDVKTGK-------------CLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 178 (312)
T ss_dssp EETTTCC-------------EEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EECCCCE-------------EEEEecC-CCCcEEEEEEcCCCCEEEEEeCCCcEEEEEC
Confidence 8543210 0011111 1123444443 3345555677888998864
No 116
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=38.25 E-value=1.7e+02 Score=24.33 Aligned_cols=195 Identities=14% Similarity=0.129 Sum_probs=0.0
Q ss_pred eeEEE-ecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcCCceEEEEecCCcEEEEecCCCCCCCCCCC
Q 016197 82 HTLFL-TETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKK 160 (393)
Q Consensus 82 ~~~~l-t~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~ 160 (393)
+.+++ ..+|++|+......+.+-.-................ .-+.++++.+|++|....
T Consensus 80 ~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~~~---------~~~~i~~~~~g~l~v~~~----------- 139 (286)
T 1q7f_A 80 NRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQ---------HPRGVTVDNKGRIIVVEC----------- 139 (286)
T ss_dssp EEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEECTTTCS---------CEEEEEECTTSCEEEEET-----------
T ss_pred eEEEEEcCCCeEEEEcCCCCCEEEEECCCCcEEEEecCccCC---------CceEEEEeCCCCEEEEEC-----------
Q ss_pred CCcccccCeEeccCCCceEEEE----ecCCceEEEEeCCCcEEEEeCCCCCCCCCCCCCCccccccccccccceeecccc
Q 016197 161 AAKVIPIPTKVECLSGIFTKQA----ALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELE 236 (393)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~i~~i----~~g~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~ 236 (393)
......+-......+..+ ....-..++++.+|++|+. .....--.+-...
T Consensus 140 ----~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~----------------------~~~~~~i~~~~~~ 193 (286)
T 1q7f_A 140 ----KVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFIS----------------------DNRAHCVKVFNYE 193 (286)
T ss_dssp ----TTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEE----------------------EGGGTEEEEEETT
T ss_pred ----CCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEE----------------------ECCCCEEEEEcCC
Q ss_pred CccEEEEEe----CCceeEEEecCCcEEEEeCCCCCccccCCCCCcCCCccccCCCC--cceEEeeCceeEEEEc-CCCE
Q 016197 237 GVKVKIAAA----GFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPY--SEEVVCGGYHTCVLTS-GGEL 309 (393)
Q Consensus 237 ~~~i~~i~~----g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~--v~~v~~g~~~~~~lt~-~g~v 309 (393)
...+..+.. ..-..++++.+|++|.-.......+-.-+............... +..++...+-.++++. +++|
T Consensus 194 g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v 273 (286)
T 1q7f_A 194 GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLASKDYRL 273 (286)
T ss_dssp CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEE
T ss_pred CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEECCCCeE
Q ss_pred EEEeCCCCCCCCC
Q 016197 310 YTWGSNENGCLGI 322 (393)
Q Consensus 310 ~~~G~n~~gqlG~ 322 (393)
..|-.....-.|.
T Consensus 274 ~v~~~~~~~pvg~ 286 (286)
T 1q7f_A 274 YIYRYVQLAPVGM 286 (286)
T ss_dssp EEEECSCCCCTTC
T ss_pred EEEEcccccccCC
No 117
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=38.21 E-value=2.2e+02 Score=25.46 Aligned_cols=77 Identities=6% Similarity=-0.004 Sum_probs=40.1
Q ss_pred CceeEEEeCCCe-eEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcCC---ceEEEEecCCcEEE
Q 016197 71 HSLKALACGGAH-TLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY---HHSSAITVDGELYM 146 (393)
Q Consensus 71 ~~I~~I~~G~~~-~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g~---~~~~~lt~~G~vy~ 146 (393)
..|..|+...+. .++...||.|.+|-....++.-. .....|..+......|..++... ...+.-..+|.|..
T Consensus 178 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~i 253 (447)
T 3dw8_B 178 YHINSISINSDYETYLSADDLRINLWHLEITDRSFN----IVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRL 253 (447)
T ss_dssp SCCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEE----EEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred cceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceee----eeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEE
Confidence 456666664432 22223677888886432111000 00001111223334677777654 45677788999999
Q ss_pred EecCC
Q 016197 147 WGKNS 151 (393)
Q Consensus 147 ~G~n~ 151 (393)
|-...
T Consensus 254 wd~~~ 258 (447)
T 3dw8_B 254 CDMRA 258 (447)
T ss_dssp EETTT
T ss_pred EECcC
Confidence 97643
No 118
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=36.94 E-value=2.2e+02 Score=25.19 Aligned_cols=156 Identities=12% Similarity=0.073 Sum_probs=81.5
Q ss_pred EEEeCCCeeEEE---ecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcC---CceEEEEecCCcEEEEe
Q 016197 75 ALACGGAHTLFL---TETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG---YHHSSAITVDGELYMWG 148 (393)
Q Consensus 75 ~I~~G~~~~~~l---t~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g---~~~~~~lt~~G~vy~~G 148 (393)
.+++...+..++ ..+|.|++|-....+.+.. ....+..-...|..++.. ....+.-..+|.|..|-
T Consensus 39 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~--------~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~ 110 (402)
T 2aq5_A 39 FCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK--------NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWE 110 (402)
T ss_dssp SEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT--------TCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEE
T ss_pred cEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC--------CCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEE
Confidence 466666766655 4589999997655443210 011122233477777764 45566667799999997
Q ss_pred cCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecCC---ceEEEEeCCCcEEEEeCCCCCCCCCCCCCCccccccccc
Q 016197 149 KNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGF---EQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTS 225 (393)
Q Consensus 149 ~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~---~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~~ 225 (393)
....+... ........+.. ....|..++... ...+.-..+|.|..|-.....
T Consensus 111 ~~~~~~~~------~~~~~~~~~~~-h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~------------------ 165 (402)
T 2aq5_A 111 IPDGGLVL------PLREPVITLEG-HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA------------------ 165 (402)
T ss_dssp CCTTCCSS------CBCSCSEEEEC-CSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE------------------
T ss_pred ccCCCCcc------ccCCceEEecC-CCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC------------------
Confidence 65432110 00011111211 123466665443 345555788999999653210
Q ss_pred cccceeec-cccCccEEEEEeC--CceeEEEecCCcEEEEeCC
Q 016197 226 EYTPRLIK-ELEGVKVKIAAAG--FLHSACIDENGRVYIFGDR 265 (393)
Q Consensus 226 ~~~p~~i~-~~~~~~i~~i~~g--~~~~~~lt~~G~vy~wG~n 265 (393)
....+. ......|..++-. ....+....+|.|+.|-..
T Consensus 166 --~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 206 (402)
T 2aq5_A 166 --AVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPR 206 (402)
T ss_dssp --EEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETT
T ss_pred --ccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCC
Confidence 001110 1112246666554 3344555678899999644
No 119
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=35.10 E-value=3.5e+02 Score=26.99 Aligned_cols=122 Identities=11% Similarity=0.076 Sum_probs=69.3
Q ss_pred EcCCceEEEEecCCcEEEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecC--CceEEEEeCCCcEEEEeCCCC
Q 016197 129 STGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG--FEQSVAVTGGGKVLSWGAGGS 206 (393)
Q Consensus 129 ~~g~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g--~~~s~~lt~~G~v~~~G~n~~ 206 (393)
+...+..+++|+.|++|..-...--. + ...-.+....+...++.+|+.+... ..+.++.|++|.+.-.-...+
T Consensus 511 ~~t~d~ll~ft~~Gr~y~~~~~~lP~---~--~~~G~~i~~ll~l~~~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~~ 585 (716)
T 1zvu_A 511 GKSNQPVVFVDSTGRSYAIDPITLPS---A--RGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDL 585 (716)
T ss_dssp CCSSSCEEEEETTSEEEEECTTTSCC---C--C---CBSTTTSCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGG
T ss_pred ecCCCEEEEEecCCcEEEEEeeeccc---c--cccCeeHHhccCCCCCCeEEEEEEecCCceEEEEeCCceEEEecHHHh
Confidence 44667789999999999987654322 1 1112333344444456678877765 346777899999887654332
Q ss_pred CCCCCCCCCCccccccccccccceeeccc-cCccEEEE---EeCCceeEEEecCCcEEEEeCCCCCccc
Q 016197 207 GRLGHGQESSILGFLRSTSEYTPRLIKEL-EGVKVKIA---AAGFLHSACIDENGRVYIFGDRAVDKML 271 (393)
Q Consensus 207 gqlg~~~~~~~~~~~~~~~~~~p~~i~~~-~~~~i~~i---~~g~~~~~~lt~~G~vy~wG~n~~gqlg 271 (393)
.... ......-.+ ++..++.+ ..+....++++++|++..+-...--.+|
T Consensus 586 ~~~~----------------~~g~~ai~L~~~d~lv~~~~~~~~~~~v~l~t~~g~~lrf~~~~v~~~g 638 (716)
T 1zvu_A 586 VARN----------------RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS 638 (716)
T ss_dssp CCCS----------------TTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEESTTSCBCS
T ss_pred cccC----------------ccceEEEeeCCCCEEEEEEEecCCCCEEEEEeCCCeEEEEEHHHCCccC
Confidence 1100 011111111 12222222 2356788899999999988776544443
No 120
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=33.30 E-value=2.7e+02 Score=25.09 Aligned_cols=67 Identities=13% Similarity=0.068 Sum_probs=37.6
Q ss_pred CceeEEEeCCC--eeEE-EecCCcEEEEecCCCeeccCCCCCCceecceEec--cCCCcEEEEEcC---CceEEEEecCC
Q 016197 71 HSLKALACGGA--HTLF-LTETGCVYATGLNDFGQLGISENIGYSLEPLRIS--GLKKEVVQISTG---YHHSSAITVDG 142 (393)
Q Consensus 71 ~~I~~I~~G~~--~~~~-lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~--~~~~~i~~i~~g---~~~~~~lt~~G 142 (393)
.+|..|+.... ..++ =..||.|.+|-.... ..+..+. .-...|..|+.. ....+.-..||
T Consensus 120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~------------~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~ 187 (435)
T 4e54_B 120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIK------------DKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEG 187 (435)
T ss_dssp SCEEEEEECSSCTTCEEEEETTSCEEEECSSCC------------SCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSS
T ss_pred CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCC------------CceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCC
Confidence 46888887642 2333 368999999943211 0111111 122367777643 33455556788
Q ss_pred cEEEEec
Q 016197 143 ELYMWGK 149 (393)
Q Consensus 143 ~vy~~G~ 149 (393)
.|..|-.
T Consensus 188 ~v~iwd~ 194 (435)
T 4e54_B 188 TTRLQDF 194 (435)
T ss_dssp CEEEEET
T ss_pred EEEEeec
Confidence 8988854
No 121
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=28.97 E-value=2.6e+02 Score=23.59 Aligned_cols=113 Identities=12% Similarity=0.097 Sum_probs=57.4
Q ss_pred CceeEEEeCCCe-eEE--EecCCcEEEEecCCCeeccCCCCCCceecc-eEeccCCCcEEEEEcCC--ceEEEEecCCcE
Q 016197 71 HSLKALACGGAH-TLF--LTETGCVYATGLNDFGQLGISENIGYSLEP-LRISGLKKEVVQISTGY--HHSSAITVDGEL 144 (393)
Q Consensus 71 ~~I~~I~~G~~~-~~~--lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p-~~i~~~~~~i~~i~~g~--~~~~~lt~~G~v 144 (393)
..|..|+...+. .++ -..||.|.+|--... ......| ..+..-...|..++... ...+.-..+|.|
T Consensus 39 ~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~--------~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i 110 (340)
T 4aow_A 39 GWVTQIATTPQFPDMILSASRDKTIIMWKLTRD--------ETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTL 110 (340)
T ss_dssp SCEEEEEECTTCTTEEEEEETTSCEEEEEECCS--------SSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC--------CcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccc
Confidence 468888876442 233 357899999964321 1111112 22222234676666543 345555678888
Q ss_pred EEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecCCceEEEEeCCCcEEEEeC
Q 016197 145 YMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGA 203 (393)
Q Consensus 145 y~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~s~~lt~~G~v~~~G~ 203 (393)
+.|-.... .........................+.-..++.+..|-.
T Consensus 111 ~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~ 157 (340)
T 4aow_A 111 RLWDLTTG------------TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT 157 (340)
T ss_dssp EEEETTTT------------EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT
T ss_pred eEEeeccc------------ceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEe
Confidence 88865321 111111111122223333334445555677888888843
No 122
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=28.78 E-value=2e+02 Score=28.02 Aligned_cols=71 Identities=18% Similarity=0.178 Sum_probs=35.3
Q ss_pred CceeEEEecC-CcEEEEeCCCCCccccCCCCCcCCCccccC--CC-CcceEEeeCceeEEEEcCCCEEEEeCCCC
Q 016197 247 FLHSACIDEN-GRVYIFGDRAVDKMLFQEGNHARRPSLISK--LP-YSEEVVCGGYHTCVLTSGGELYTWGSNEN 317 (393)
Q Consensus 247 ~~~~~~lt~~-G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~--~~-~v~~v~~g~~~~~~lt~~g~v~~~G~n~~ 317 (393)
.+.++.++++ ++||+=+.+.-..|...+..........+. .. ...+-.|.++-.++...+..+|+||.|.+
T Consensus 30 ~y~~llld~~~~~L~VGar~~i~~l~~~~~~~~~~~~~~~~~~~~~C~~k~eC~NyIrvl~~~~~~l~~CGT~Af 104 (590)
T 3nvq_A 30 PHTVLFHEPGSSSVWVGGRGKVYLFDFPEGKNASVRTVNIGSTKGSCLDKRDCENYITLLERRSEGLLACGTNAR 104 (590)
T ss_dssp SSCEEECCTTCSEEEEECBSEEEEEECCTTSCCBCCEEECCSCSSCCSSCSSCCCBEEEEEEETTEEEEEECTTT
T ss_pred ceeEEEEcCCCCEEEEeecceEEEeeCCCCCccceEecCCHHHhhhhhccccccceEEEeeecCCcEEEeecCCC
Confidence 3445555655 456665555544444332111111001110 00 12344566665566666667999999875
No 123
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=28.77 E-value=3.2e+02 Score=24.46 Aligned_cols=108 Identities=8% Similarity=0.085 Sum_probs=58.8
Q ss_pred CceeEEEeCCCeeEEE--ecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEcC--CceEEEEecCCcEEE
Q 016197 71 HSLKALACGGAHTLFL--TETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTG--YHHSSAITVDGELYM 146 (393)
Q Consensus 71 ~~I~~I~~G~~~~~~l--t~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~g--~~~~~~lt~~G~vy~ 146 (393)
..|..++...+..+++ ..||.|.+|-.... .....+..-...|..++.. ....+.-..||.|..
T Consensus 109 ~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~------------~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~i 176 (410)
T 1vyh_C 109 SPVTRVIFHPVFSVMVSASEDATIKVWDYETG------------DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKL 176 (410)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTC------------CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCE
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC------------cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 4678888876655444 57899999964321 1112233333467766653 334555567888888
Q ss_pred EecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEec--CCceEEEEeCCCcEEEEeCC
Q 016197 147 WGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAAL--GFEQSVAVTGGGKVLSWGAG 204 (393)
Q Consensus 147 ~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~--g~~~s~~lt~~G~v~~~G~n 204 (393)
|-......+ ..+. .-...|..++. ...+.+.-..++.|..|-..
T Consensus 177 wd~~~~~~~-------------~~~~-~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~ 222 (410)
T 1vyh_C 177 WDFQGFECI-------------RTMH-GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 222 (410)
T ss_dssp EETTSSCEE-------------ECCC-CCSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred EeCCCCcee-------------EEEc-CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 854321100 0000 01123444443 34456666789999999653
No 124
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=28.18 E-value=3.2e+02 Score=24.34 Aligned_cols=121 Identities=7% Similarity=-0.026 Sum_probs=58.8
Q ss_pred CCceeEEEeCCC--eeEEEecCCcEEEEecCC--CeeccCCCCCCceecceEecc--CCCcEEEEEc----CCceEEEEe
Q 016197 70 KHSLKALACGGA--HTLFLTETGCVYATGLND--FGQLGISENIGYSLEPLRISG--LKKEVVQIST----GYHHSSAIT 139 (393)
Q Consensus 70 ~~~I~~I~~G~~--~~~~lt~~G~v~~wG~n~--~g~lg~~~~~~~~~~p~~i~~--~~~~i~~i~~----g~~~~~~lt 139 (393)
...|..|+...+ ..+.-..||.|.+|-... .+++-.. ..........+.. ....+..+.. .....+.-+
T Consensus 111 ~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 189 (437)
T 3gre_A 111 SSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKF-LNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALT 189 (437)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEE-EEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEE
T ss_pred CCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeec-cccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEe
Confidence 346777777553 455557889999995421 1100000 0000000001111 1224555542 255666777
Q ss_pred cCCcEEEEecCCCCCCCCCCCCCcccccCeEeccC-CCceEEEEecC--CceEEEEeCCCcEEEEeCC
Q 016197 140 VDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECL-SGIFTKQAALG--FEQSVAVTGGGKVLSWGAG 204 (393)
Q Consensus 140 ~~G~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~-~~~~i~~i~~g--~~~s~~lt~~G~v~~~G~n 204 (393)
.+|.|+.|-.... .....+... ....|..++.. ....+.-+.+|.|..|-..
T Consensus 190 ~d~~i~iwd~~~~-------------~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 244 (437)
T 3gre_A 190 NLSRVIIFDIRTL-------------ERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIR 244 (437)
T ss_dssp TTSEEEEEETTTC-------------CEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred CCCeEEEEeCCCC-------------eeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 8899999965321 011111110 11246655543 3445556788999999653
No 125
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=28.08 E-value=2.9e+02 Score=23.80 Aligned_cols=230 Identities=9% Similarity=-0.029 Sum_probs=102.0
Q ss_pred CceeEEEeCCC--eeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEc-CCceEEEEecCCcEEEE
Q 016197 71 HSLKALACGGA--HTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIST-GYHHSSAITVDGELYMW 147 (393)
Q Consensus 71 ~~I~~I~~G~~--~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~-g~~~~~~lt~~G~vy~~ 147 (393)
..|..++...+ +.+.-..|+.+.+|-.... .........+..-...|..+.. .....+.-..++.|..|
T Consensus 98 ~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~--------~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~w 169 (340)
T 1got_B 98 SWVMTCAYAPSGNYVACGGLDNICSIYNLKTR--------EGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTCEEEEEETTTC--------SBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEE
T ss_pred ccEEEEEECCCCCEEEEEeCCCeEEEEECccC--------CCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEE
Confidence 34555554433 3333456777888754321 0001111122222234444432 22335556678888888
Q ss_pred ecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecCC--ceEEEEeCCCcEEEEeCCCCCCCCCCCCCCccccccccc
Q 016197 148 GKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGF--EQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTS 225 (393)
Q Consensus 148 G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~--~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~~ 225 (393)
-..... ....+.. -...|..++... ...+.-..+|.|..|-.....
T Consensus 170 d~~~~~-------------~~~~~~~-h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~------------------ 217 (340)
T 1got_B 170 DIETGQ-------------QTTTFTG-HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM------------------ 217 (340)
T ss_dssp ETTTTE-------------EEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS------------------
T ss_pred ECCCCc-------------EEEEEcC-CCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCe------------------
Confidence 543210 0011111 112355444432 344445678888888543210
Q ss_pred cccceeeccccCccEEEEEeC--CceeEEEecCCcEEEEeCCCCCccccCCCCCcCCCccccCCCCcceEEeeCc--eeE
Q 016197 226 EYTPRLIKELEGVKVKIAAAG--FLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGY--HTC 301 (393)
Q Consensus 226 ~~~p~~i~~~~~~~i~~i~~g--~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~v~~v~~g~~--~~~ 301 (393)
....+.. ....|..++.. ....+.-..||.|..|-......+-. ...+ .....|..++...+ ..+
T Consensus 218 --~~~~~~~-h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~-----~~~~---~~~~~v~~~~~s~~g~~l~ 286 (340)
T 1got_B 218 --CRQTFTG-HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT-----YSHD---NIICGITSVSFSKSGRLLL 286 (340)
T ss_dssp --EEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-----ECCT---TCCSCEEEEEECTTSSEEE
T ss_pred --eEEEEcC-CcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEE-----EccC---CcccceEEEEECCCCCEEE
Confidence 0001111 11245555544 33444556788888886543211100 0000 00113555554333 444
Q ss_pred EEEcCCCEEEEeCCCCCCCCCCCCCCccCceeecCCCCCCCeEEEEeCCCce-EE-EE-CCcEEEE
Q 016197 302 VLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHT-AA-IS-EGKILTW 364 (393)
Q Consensus 302 ~lt~~g~v~~~G~n~~gqlG~g~~~~~~~p~~v~~~~~~~~i~~i~~G~~~t-~~-l~-~g~v~~w 364 (393)
+-..||.|..|-...... ...+.. ....|..++...+.. ++ -. |+.|..|
T Consensus 287 ~g~~d~~i~vwd~~~~~~-----------~~~~~~--h~~~v~~~~~s~dg~~l~s~s~D~~i~iW 339 (340)
T 1got_B 287 AGYDDFNCNVWDALKADR-----------AGVLAG--HDNRVSCLGVTDDGMAVATGSWDSFLKIW 339 (340)
T ss_dssp EEETTSEEEEEETTTCCE-----------EEEEEC--CSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred EECCCCeEEEEEcccCcE-----------eeEeec--CCCcEEEEEEcCCCCEEEEEcCCccEEec
Confidence 456778888886433111 111111 223566666554432 22 23 7888877
No 126
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=27.67 E-value=2.9e+02 Score=23.82 Aligned_cols=17 Identities=18% Similarity=0.239 Sum_probs=12.7
Q ss_pred ceEEEEeCCCcEEEEeC
Q 016197 187 EQSVAVTGGGKVLSWGA 203 (393)
Q Consensus 187 ~~s~~lt~~G~v~~~G~ 203 (393)
-+.++++.+|.||+...
T Consensus 294 p~~ia~~~dG~lyvad~ 310 (329)
T 3fvz_A 294 PHDIVASEDGTVYIGDA 310 (329)
T ss_dssp EEEEEECTTSEEEEEES
T ss_pred eeEEEECCCCCEEEEEC
Confidence 35778888888888754
No 127
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=26.46 E-value=2.9e+02 Score=23.30 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=11.9
Q ss_pred ceeEEEEcCCCEEEEeCCC
Q 016197 298 YHTCVLTSGGELYTWGSNE 316 (393)
Q Consensus 298 ~~~~~lt~~g~v~~~G~n~ 316 (393)
.|.+++ -+++||.+|...
T Consensus 244 ~~~~~~-~~~~i~v~GG~~ 261 (302)
T 2xn4_A 244 NAGVCA-VNGLLYVVGGDD 261 (302)
T ss_dssp SCEEEE-ETTEEEEECCBC
T ss_pred cCeEEE-ECCEEEEECCcC
Confidence 344444 488999999643
No 128
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=25.09 E-value=3.4e+02 Score=23.59 Aligned_cols=155 Identities=8% Similarity=0.016 Sum_probs=78.8
Q ss_pred cCCceeEEEeCC---CeeEEEecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEEc--CCceEEEEecCCc
Q 016197 69 EKHSLKALACGG---AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIST--GYHHSSAITVDGE 143 (393)
Q Consensus 69 ~~~~I~~I~~G~---~~~~~lt~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~~--g~~~~~~lt~~G~ 143 (393)
....|..++... ...+.-..||.|.+|-... ...............|..++. .....+.-..+|.
T Consensus 117 h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~----------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 186 (383)
T 3ei3_B 117 PGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG----------SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGR 186 (383)
T ss_dssp TTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS----------CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSE
T ss_pred cCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC----------CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCC
Confidence 345688888755 3455557889999996532 000110001111134555543 4556666778899
Q ss_pred EEEEecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecCCc---eEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccc
Q 016197 144 LYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFE---QSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF 220 (393)
Q Consensus 144 vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~---~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~ 220 (393)
|+.|-.. ++ . ...+.. ....|..++.... ..+.-..+|.|..|-......
T Consensus 187 i~i~d~~--~~-----------~-~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~------------ 239 (383)
T 3ei3_B 187 LLLLGLD--GH-----------E-IFKEKL-HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKD------------ 239 (383)
T ss_dssp EEEEETT--SC-----------E-EEEEEC-SSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCS------------
T ss_pred EEEEECC--CC-----------E-EEEecc-CCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCc------------
Confidence 9998652 10 0 111111 1223555554333 455556788899986532100
Q ss_pred ccccccccceeeccccCccEEEEEeCC---ceeEEEecCCcEEEEeCCC
Q 016197 221 LRSTSEYTPRLIKELEGVKVKIAAAGF---LHSACIDENGRVYIFGDRA 266 (393)
Q Consensus 221 ~~~~~~~~p~~i~~~~~~~i~~i~~g~---~~~~~lt~~G~vy~wG~n~ 266 (393)
...+.... .....|..++... ...++...+|.|+.|-...
T Consensus 240 -----~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~ 282 (383)
T 3ei3_B 240 -----KNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYD 282 (383)
T ss_dssp -----TTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTB
T ss_pred -----ccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCC
Confidence 00000000 1122566666544 4555566788999996543
No 129
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=24.25 E-value=2.4e+02 Score=21.56 Aligned_cols=104 Identities=11% Similarity=-0.095 Sum_probs=54.5
Q ss_pred EEEEecCC-ceEEEEeCCCcEEEEeCCCCCCCCCCCCCCccccccccccccceeeccccCccEEEEEeC-CceeEEEecC
Q 016197 179 TKQAALGF-EQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAG-FLHSACIDEN 256 (393)
Q Consensus 179 i~~i~~g~-~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g-~~~~~~lt~~ 256 (393)
..+.-|-. .+.+-|..||.|-.-..... ...--.+.... ..++.|.|- ..+.+++..+
T Consensus 32 ~~~LYcr~~g~~LqI~~dG~V~Gt~~~~~-------------------~~s~lei~sv~-~G~V~L~g~~sg~yL~mn~~ 91 (142)
T 3p6j_A 32 EVLLKSTETGQYLRINPDGTVDGTRDRSD-------------------THIQFQISPEG-NGEVLLKSTETGQYLRINPD 91 (142)
T ss_dssp CEEEEETTTCCEEEECTTSBEEEECCTTC-------------------GGGCEEEEEEE-TTEEEEEETTTTEEEEECTT
T ss_pred EEEEEEeCCCEEEEECCCCCEeeecCCCC-------------------CceEEEEEEcc-CCEEEEEEecCCEEEeECCC
Confidence 55555544 56677888999986543211 11111121111 257788876 5778899999
Q ss_pred CcEEEEeCCCCCccccCCCCCcCCCccccCCCCcceEEe-eCceeEEEEcCCCEEE
Q 016197 257 GRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVC-GGYHTCVLTSGGELYT 311 (393)
Q Consensus 257 G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~v~~v~~-g~~~~~~lt~~g~v~~ 311 (393)
|+||.--... .+........... .+..+.. -....+++.++|++|+
T Consensus 92 G~l~Gs~~~t--------~ecsflEi~~en~-y~v~i~g~~sg~YLamnk~Grlyg 138 (142)
T 3p6j_A 92 GTVDGTRDRS--------DTHIQFQISPEGN-GEVLLKSTETGQYLRINPDGTVDG 138 (142)
T ss_dssp SBEEEECCTT--------CGGGCEEEEECST-TCEEEEETTTCCEEEECTTSBEEE
T ss_pred CCEeecccCC--------CCceEEEEEeecC-cEEEEEEecCCEEEEECCCcCCcc
Confidence 9999631110 0111111111111 1222221 1234789999999996
No 130
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=23.04 E-value=3.4e+02 Score=22.89 Aligned_cols=125 Identities=10% Similarity=-0.016 Sum_probs=66.9
Q ss_pred EecCCceEEEEeCCCcEEEEeCCCCCCCCCCCCCCccccccccccccceeeccccCccEEEEEeC--CceeEEEecCCcE
Q 016197 182 AALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAG--FLHSACIDENGRV 259 (393)
Q Consensus 182 i~~g~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g--~~~~~~lt~~G~v 259 (393)
.+.+.++.+++|+.|++|..-....-.. .. ........++..++..|+.+... ....+++|++|.+
T Consensus 40 ~~~t~~~ll~~T~~Gr~~~~~~~elp~~-r~-----------~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~ 107 (256)
T 1zvt_A 40 KGKSNQPVVFVDSTGRSYAIDPITLPSA-RG-----------QGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYG 107 (256)
T ss_dssp EEETTSCEEEEETTSEEEEECGGGSCCS-SS-----------CCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEE
T ss_pred EeCCCCEEEEEeCCCeEEEEEHHHCCCc-CC-----------CCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeE
Confidence 3445678899999999999865432111 00 00111112222345567777653 3446778999987
Q ss_pred EEEeCCCCCccccCCCCCcCCCccccCCCCcceEE---eeCceeEEEEcCCCEEEEeCCCCCCCCC
Q 016197 260 YIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVV---CGGYHTCVLTSGGELYTWGSNENGCLGI 322 (393)
Q Consensus 260 y~wG~n~~gqlg~~~~~~~~~p~~i~~~~~v~~v~---~g~~~~~~lt~~g~v~~~G~n~~gqlG~ 322 (393)
.-.-..++-... .....-..+...+.+..+. .+.++.+++|++|++.-+-.++--.+|.
T Consensus 108 Kr~~~~e~~~~~----r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~ei~~~gR 169 (256)
T 1zvt_A 108 FVCTFNDLVARN----RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 169 (256)
T ss_dssp EEEEGGGGCCCS----TTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEEGGGSCBCSS
T ss_pred EEeEHHHhcccC----cCceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEEHHHCCCcCc
Confidence 765433321100 0000111111122333322 2567889999999999988776544444
No 131
>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A
Probab=22.01 E-value=2.5e+02 Score=21.02 Aligned_cols=64 Identities=11% Similarity=-0.116 Sum_probs=35.8
Q ss_pred EEEEecCCceEEEEeCCCcEEEEeCCCCCCCCCCCCCCccccccccccccceeeccccCccEEEEEeC-CceeEEEecCC
Q 016197 179 TKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAG-FLHSACIDENG 257 (393)
Q Consensus 179 i~~i~~g~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g-~~~~~~lt~~G 257 (393)
+.--.|...+-+-+..||+|-...+.. ....--.+.... ..++.|..- ....+++..+|
T Consensus 8 ~~~~~~~~g~~L~I~~dG~V~Gt~~~~-------------------~~~s~l~~~~v~-~G~V~I~g~~sg~yL~m~~~G 67 (132)
T 3q7x_A 8 VLLRSTETGQFLRINPDGTVDGTRDRS-------------------DPGIQFQISPEG-NGEVLLRSTETGQFLRINPDG 67 (132)
T ss_dssp EEEEETTTCCEEEECTTSBEEEECCTT-------------------CGGGCEEEEEEE-TTEEEEEETTTCCEEEECTTS
T ss_pred heeeeccCcEEEEECCCCcEEeecCCC-------------------CCCcEEEEEecc-cCEEEEEEEcccEEEEECCCC
Confidence 333456666777788899998764321 111111122111 135555543 34567888999
Q ss_pred cEEEE
Q 016197 258 RVYIF 262 (393)
Q Consensus 258 ~vy~w 262 (393)
+||.-
T Consensus 68 ~v~Gs 72 (132)
T 3q7x_A 68 TVDGT 72 (132)
T ss_dssp BEEEE
T ss_pred CEeec
Confidence 99963
No 132
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=22.01 E-value=3.2e+02 Score=22.19 Aligned_cols=14 Identities=29% Similarity=0.302 Sum_probs=7.8
Q ss_pred eEEEEeCCCcEEEE
Q 016197 188 QSVAVTGGGKVLSW 201 (393)
Q Consensus 188 ~s~~lt~~G~v~~~ 201 (393)
+.++++.+|++|+.
T Consensus 111 ~~i~~~~~g~l~v~ 124 (270)
T 1rwi_B 111 EGLAVDTQGAVYVA 124 (270)
T ss_dssp EEEEECTTCCEEEE
T ss_pred cceEECCCCCEEEE
Confidence 34555556666654
No 133
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=21.67 E-value=3.5e+02 Score=22.54 Aligned_cols=111 Identities=8% Similarity=-0.029 Sum_probs=59.8
Q ss_pred eeeccccceEEEEEEcCCCCCcCCCCCCCeeeeeeeccccCCceeEEEeCC----CeeEEEecCCcEEEEecCCCeeccC
Q 016197 30 WISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGG----AHTLFLTETGCVYATGLNDFGQLGI 105 (393)
Q Consensus 30 ~~~~~~~~~~v~~wG~n~~g~lG~~~~~~~~~p~~~~~~~~~~I~~I~~G~----~~~~~lt~~G~v~~wG~n~~g~lg~ 105 (393)
++++.+.++.|.+|=.... .....+..........|..|+... ...+....||.|.+|-........
T Consensus 25 ~l~~~~~dg~i~iw~~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~- 95 (351)
T 3f3f_A 25 HVATCSSDQHIKVFKLDKD--------TSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEEC- 95 (351)
T ss_dssp EEEEEETTSEEEEEEECSS--------SCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTT-
T ss_pred EEEEeeCCCeEEEEECCCC--------CCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccc-
Confidence 3444556777777754321 111112111112345688888754 345556789999999765321100
Q ss_pred CCCCCceecceEeccCCCcEEEEEcCC----ceEEEEecCCcEEEEecCC
Q 016197 106 SENIGYSLEPLRISGLKKEVVQISTGY----HHSSAITVDGELYMWGKNS 151 (393)
Q Consensus 106 ~~~~~~~~~p~~i~~~~~~i~~i~~g~----~~~~~lt~~G~vy~~G~n~ 151 (393)
..........+......|..++... ...+....+|.|+.|-...
T Consensus 96 --~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 143 (351)
T 3f3f_A 96 --SGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALE 143 (351)
T ss_dssp --SSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSS
T ss_pred --cccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCC
Confidence 0001111222333345788887764 4566778899999997543
No 134
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=21.24 E-value=3.7e+02 Score=22.61 Aligned_cols=227 Identities=13% Similarity=0.003 Sum_probs=109.2
Q ss_pred CceeEEEeCCCeeEEE--ecCCcEEEEecCCCeeccCCCCCCceecceEeccCCCcEEEEE--cCCceEEEEecCCcEEE
Q 016197 71 HSLKALACGGAHTLFL--TETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQIS--TGYHHSSAITVDGELYM 146 (393)
Q Consensus 71 ~~I~~I~~G~~~~~~l--t~~G~v~~wG~n~~g~lg~~~~~~~~~~p~~i~~~~~~i~~i~--~g~~~~~~lt~~G~vy~ 146 (393)
..|..|+...+-..++ ..||.|.+|-.... .....+......|..++ ......+.-..++.|..
T Consensus 14 ~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~v 81 (304)
T 2ynn_A 14 DRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ------------VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRV 81 (304)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTT------------EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred CceEEEEECCCCCEEEEEcCCCcEEEEECCCC------------ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEE
Confidence 4577787766554444 57899999954321 11122222233444443 34455666678899999
Q ss_pred EecCCCCCCCCCCCCCcccccCeEeccCCCceEEEEecC--CceEEEEeCCCcEEEEeCCCCCCCCCCCCCCcccccccc
Q 016197 147 WGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG--FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRST 224 (393)
Q Consensus 147 ~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~~~i~~i~~g--~~~s~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~~~~~ 224 (393)
|-..+.. ....+.. -...|..|+.. ....+.-..+|.|..|-.....
T Consensus 82 wd~~~~~-------------~~~~~~~-h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~----------------- 130 (304)
T 2ynn_A 82 FNYNTGE-------------KVVDFEA-HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW----------------- 130 (304)
T ss_dssp EETTTCC-------------EEEEEEC-CSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT-----------------
T ss_pred EECCCCc-------------EEEEEeC-CCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc-----------------
Confidence 9654211 1111111 11235555443 3344555678999998542110
Q ss_pred ccccceeeccccCccEEEEEeCC---ceeEEEecCCcEEEEeCCCCCccccCCCCCcCCCccccC-CCCcceEEee----
Q 016197 225 SEYTPRLIKELEGVKVKIAAAGF---LHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISK-LPYSEEVVCG---- 296 (393)
Q Consensus 225 ~~~~p~~i~~~~~~~i~~i~~g~---~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~-~~~v~~v~~g---- 296 (393)
.+..........|..++-.. ...+.-..||.|..|-....... ...... ...|..+...
T Consensus 131 ---~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~ 197 (304)
T 2ynn_A 131 ---ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN----------FTLTTGQERGVNYVDYYPLPD 197 (304)
T ss_dssp ---EEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCS----------EEEECCCTTCEEEEEECCSTT
T ss_pred ---chhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcc----------ceeccCCcCcEEEEEEEEcCC
Confidence 00011011122455555432 34455567899999864321100 000001 1123333332
Q ss_pred CceeEEEEcCCCEEEEeCCCCCCCCCCCCCCccCceeecCCCCCCCeEEEEeCCCceEEEE---CCcEEEEec
Q 016197 297 GYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQVSCGWKHTAAIS---EGKILTWGW 366 (393)
Q Consensus 297 ~~~~~~lt~~g~v~~~G~n~~gqlG~g~~~~~~~p~~v~~~~~~~~i~~i~~G~~~t~~l~---~g~v~~wG~ 366 (393)
....+.-..||.|..|-...... ...+.. ....|..++.-.....+++ ||.|..|=.
T Consensus 198 ~~~l~s~s~D~~i~iWd~~~~~~-----------~~~~~~--h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~ 257 (304)
T 2ynn_A 198 KPYMITASDDLTIKIWDYQTKSC-----------VATLEG--HMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257 (304)
T ss_dssp CCEEEEEETTSEEEEEETTTTEE-----------EEEEEC--CSSCEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred CCEEEEEcCCCeEEEEeCCCCcc-----------ceeeCC--CCCCEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 12445566888999997543110 111111 1235666655544433333 788888865
Done!