BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016198
(393 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MA3|A Chain A, Structure Of A Sir2 Enzyme Bound To An Acetylated P53
Peptide
pdb|1S7G|A Chain A, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|B Chain B, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|C Chain C, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|D Chain D, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|E Chain E, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1YC2|A Chain A, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|B Chain B, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|C Chain C, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|D Chain D, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|E Chain E, Sir2af2-Nad-Adpribose-Nicotinamide
Length = 253
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/299 (31%), Positives = 135/299 (45%), Gaps = 81/299 (27%)
Query: 110 EDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYS----------SGFK--PIT 157
++I + + S +V TGAGIS E GIP +R +G + SGFK P
Sbjct: 3 DEIRKAAEILAKSKHAVVFTGAGISAESGIPTFRGEDGLWRKYDPEEVASISGFKRNPRA 62
Query: 158 HQQFVXXXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHR 217
+F + A+PNPAH+A+A LE+ G + +ITQN+D LH R
Sbjct: 63 FWEFSMEMKDK--------------LFAEPNPAHYAIAELERMGIVKAVITQNIDMLHQR 108
Query: 218 AGS-NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFG 276
AGS LELHG++ + CLDC ++ W+E +E + G
Sbjct: 109 AGSRRVLELHGSMDKLDCLDCHETY--------------DWSEFVEDFNKG--------- 145
Query: 277 MKQRPDGDIEIDEKFWEEDFHIPTCQKCN-----------GVLKPDDRADKAMEAAKECD 325
IP C+KC G P +A+E AK CD
Sbjct: 146 --------------------EIPRCRKCGSYYVKPRVVLFGEPLPQRTLFEAIEEAKHCD 185
Query: 326 AFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLD 384
AF+V+GSSL+ A L A +AG+ + IVN T AD + +KI + GE+LP++++
Sbjct: 186 AFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMADPIFDVKIIGKAGEVLPKIVE 244
>pdb|1YC5|A Chain A, Sir2-P53 Peptide-Nicotinamide
pdb|2H4F|A Chain A, Sir2-P53 Peptide-Nad+
pdb|2H4J|A Chain A, Sir2-Deacetylated Peptide (From Enzymatic Turnover In
Crystal)
pdb|2H2D|A Chain A, The Structural Basis For Sirtuin Substrate Affinity
pdb|2H2F|A Chain A, The Structural Basis For Sirtuin Substrate Affinity
pdb|2H2G|A Chain A, The Structural Basis Of Sirtuin Substrate Affinity
pdb|2H2H|A Chain A, The Structural Basis Of Sirtuin Substrate Specificity
pdb|2H2I|A Chain A, The Structural Basis Of Sirtuin Substrate Affinity
pdb|3D4B|A Chain A, Crystal Structure Of Sir2tm In Complex With Acetyl P53
Peptide And Dadme-Nad+
pdb|3D81|A Chain A, Sir2-S-Alkylamidate Complex Crystal Structure
pdb|3PDH|A Chain A, Structure Of Sir2tm Bound To A Propionylated Peptide
Length = 246
Score = 120 bits (302), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 129/290 (44%), Gaps = 59/290 (20%)
Query: 114 QLYQFFD--NSAKLIV-LTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXX 170
++ +F D N ++L V LTGAGIST GIPD+R PNG Y + + F
Sbjct: 2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYSQNVFDIDFF--YSHPEE 59
Query: 171 XXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTV 229
+ A+PN AH LA LE+ G I+ +ITQN+DRLH RAGS +ELHG V
Sbjct: 60 FYRFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNV 119
Query: 230 YTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDE 289
C+ C + +D +K L ES D
Sbjct: 120 EEYYCVRCEKKYT---VEDVIKKL--------ESSD------------------------ 144
Query: 290 KFWEEDFHIPTCQKCNGVLKPD----------DRADKAMEAAKECDAFLVLGSSLMTMSA 339
+P C CN +++P+ D +A+ + +VLGSSL+ A
Sbjct: 145 --------VPLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPA 196
Query: 340 YRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSLS 389
L +G + IVN+GET DD+ TLK + + E RV++ G +S
Sbjct: 197 AELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRVMEEGGIS 246
>pdb|2H4H|A Chain A, Sir2 H116y Mutant-P53 Peptide-Nad
Length = 246
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 129/290 (44%), Gaps = 59/290 (20%)
Query: 114 QLYQFFD--NSAKLIV-LTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXX 170
++ +F D N ++L V LTGAGIST GIPD+R PNG Y + + F
Sbjct: 2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYSQNVFDIDFF--YSHPEE 59
Query: 171 XXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTV 229
+ A+PN AH LA LE+ G I+ +ITQN+DRLH RAGS +EL+G V
Sbjct: 60 FYRFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELYGNV 119
Query: 230 YTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDE 289
C+ C + +D +K L ES D
Sbjct: 120 EEYYCVRCEKKYT---VEDVIKKL--------ESSD------------------------ 144
Query: 290 KFWEEDFHIPTCQKCNGVLKPD----------DRADKAMEAAKECDAFLVLGSSLMTMSA 339
+P C CN +++P+ D +A+ + +VLGSSL+ A
Sbjct: 145 --------VPLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPA 196
Query: 340 YRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSLS 389
L +G + IVN+GET DD+ TLK + + E RV++ G +S
Sbjct: 197 AELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRVMEEGGIS 246
>pdb|2H59|A Chain A, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose
pdb|2H59|B Chain B, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose
pdb|3JR3|A Chain A, Sir2 Bound To Acetylated Peptide
Length = 246
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 128/290 (44%), Gaps = 59/290 (20%)
Query: 114 QLYQFFD--NSAKLIV-LTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXX 170
++ +F D N ++L V LTGAGIST GIPD+R PNG Y + + F
Sbjct: 2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYSQNVFDIDFF--YSHPEE 59
Query: 171 XXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTV 229
+ A+PN AH LA LE+ G I+ +ITQN+DRLH RAGS +EL G V
Sbjct: 60 FYRFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELAGNV 119
Query: 230 YTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDE 289
C+ C + +D +K L ES D
Sbjct: 120 EEYYCVRCEKKYT---VEDVIKKL--------ESSD------------------------ 144
Query: 290 KFWEEDFHIPTCQKCNGVLKPD----------DRADKAMEAAKECDAFLVLGSSLMTMSA 339
+P C CN +++P+ D +A+ + +VLGSSL+ A
Sbjct: 145 --------VPLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPA 196
Query: 340 YRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSLS 389
L +G + IVN+GET DD+ TLK + + E RV++ G +S
Sbjct: 197 AELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRVMEEGGIS 246
>pdb|1M2K|A Chain A, Sir2 Homologue F159a Mutant-Adp Ribose Complex
Length = 249
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 107/277 (38%), Gaps = 58/277 (20%)
Query: 114 QLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXXXXX 173
+L + S L+ LTGAG+S E GIP +R +G ++ ++P
Sbjct: 4 KLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNR-YRPEELANPQAFAKDPEKVWK 62
Query: 174 XXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTV 232
AQPN AH A A LE+ G + C+ITQNVD LH RAGS N + LHG++ V
Sbjct: 63 WYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLRVV 122
Query: 233 VCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFW 292
C C SF +ES P
Sbjct: 123 RCTSCNNSF------------------EVESAPKIPP----------------------- 141
Query: 293 EEDFHIPTCQKCNGVLKPD----------DRADKAMEAAKECDAFLVLGSSLMTMSAYRL 342
+P C KC +L+P D D+AM + D +V G+S + A L
Sbjct: 142 -----LPKCDKCGSLLRPGVVWAGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAASL 196
Query: 343 VRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEIL 379
+ G I +N ET + + + GE++
Sbjct: 197 PLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVM 233
>pdb|1M2G|A Chain A, Sir2 Homologue-Adp Ribose Complex
Length = 249
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 107/277 (38%), Gaps = 58/277 (20%)
Query: 114 QLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXXXXX 173
+L + S L+ LTGAG+S E GIP +R +G ++ ++P
Sbjct: 4 KLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNR-YRPEELANPQAFAKDPEKVWK 62
Query: 174 XXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTV 232
AQPN AH A A LE+ G + C+ITQNVD LH RAGS N + LHG++ V
Sbjct: 63 WYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLRVV 122
Query: 233 VCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFW 292
C C SF +ES P
Sbjct: 123 RCTSCNNSF------------------EVESAPKIPP----------------------- 141
Query: 293 EEDFHIPTCQKCNGVLKPD----------DRADKAMEAAKECDAFLVLGSSLMTMSAYRL 342
+P C KC +L+P D D+AM + D +V G+S + A L
Sbjct: 142 -----LPKCDKCGSLLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAASL 196
Query: 343 VRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEIL 379
+ G I +N ET + + + GE++
Sbjct: 197 PLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVM 233
>pdb|1ICI|A Chain A, Crystal Structure Of A Sir2 Homolog-Nad Complex
pdb|1ICI|B Chain B, Crystal Structure Of A Sir2 Homolog-Nad Complex
Length = 256
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 107/277 (38%), Gaps = 58/277 (20%)
Query: 114 QLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXXXXX 173
+L + S L+ LTGAG+S E GIP +R +G ++ ++P
Sbjct: 15 KLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNR-YRPEELANPQAFAKDPEKVWK 73
Query: 174 XXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTV 232
AQPN AH A A LE+ G + C+ITQNVD LH RAGS N + LHG++ V
Sbjct: 74 WYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLRVV 133
Query: 233 VCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFW 292
C C SF +ES P
Sbjct: 134 RCTSCNNSF------------------EVESAPKIPP----------------------- 152
Query: 293 EEDFHIPTCQKCNGVLKPD----------DRADKAMEAAKECDAFLVLGSSLMTMSAYRL 342
+P C KC +L+P D D+AM + D +V G+S + A L
Sbjct: 153 -----LPKCDKCGSLLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAASL 207
Query: 343 VRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEIL 379
+ G I +N ET + + + GE++
Sbjct: 208 PLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVM 244
>pdb|1M2H|A Chain A, Sir2 Homologue S24a Mutant-adp Ribose Complex
Length = 249
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 107/277 (38%), Gaps = 58/277 (20%)
Query: 114 QLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXXXXX 173
+L + S L+ LTGAG++ E GIP +R +G ++ ++P
Sbjct: 4 KLLKTIAESKYLVALTGAGVAAESGIPTFRGKDGLWNR-YRPEELANPQAFAKDPEKVWK 62
Query: 174 XXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTV 232
AQPN AH A A LE+ G + C+ITQNVD LH RAGS N + LHG++ V
Sbjct: 63 WYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLRVV 122
Query: 233 VCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFW 292
C C SF +ES P
Sbjct: 123 RCTSCNNSF------------------EVESAPKIPP----------------------- 141
Query: 293 EEDFHIPTCQKCNGVLKPD----------DRADKAMEAAKECDAFLVLGSSLMTMSAYRL 342
+P C KC +L+P D D+AM + D +V G+S + A L
Sbjct: 142 -----LPKCDKCGSLLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAASL 196
Query: 343 VRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEIL 379
+ G I +N ET + + + GE++
Sbjct: 197 PLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVM 233
>pdb|1M2N|A Chain A, Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acetyl Adp
Ribose Complex
pdb|1M2N|B Chain B, Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acetyl Adp
Ribose Complex
Length = 249
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 106/277 (38%), Gaps = 58/277 (20%)
Query: 114 QLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXXXXX 173
+L + S L+ LTGAG+S E GIP +R +G ++ ++P
Sbjct: 4 KLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNR-YRPEELANPQAFAKDPEKVWK 62
Query: 174 XXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTV 232
AQPN AH A A LE+ G + C+ITQNVD LH RAGS N + LHG++ V
Sbjct: 63 WYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDGLHERAGSRNVIHLHGSLRVV 122
Query: 233 VCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFW 292
C C SF +ES P
Sbjct: 123 RCTSCNNSF------------------EVESAPKIPP----------------------- 141
Query: 293 EEDFHIPTCQKCNGVLKPD----------DRADKAMEAAKECDAFLVLGSSLMTMSAYRL 342
+P C KC +L+P D D AM + D +V G+S + A L
Sbjct: 142 -----LPKCDKCGSLLRPGVVWAGEMLPPDVLDAAMREVERADVIIVAGTSAVVQPAASL 196
Query: 343 VRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEIL 379
+ G I +N ET + + + GE++
Sbjct: 197 PLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVM 233
>pdb|1M2J|A Chain A, Sir2 Homologue H80n Mutant-Adp Ribose Complex
Length = 249
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 107/277 (38%), Gaps = 58/277 (20%)
Query: 114 QLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXXXXX 173
+L + S L+ LTGAG+S E GIP +R +G ++ ++P
Sbjct: 4 KLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNR-YRPEELANPQAFAKDPEKVWK 62
Query: 174 XXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTV 232
AQPN A+ A A LE+ G + C+ITQNVD LH RAGS N + LHG++ V
Sbjct: 63 WYAWRMEKVFNAQPNKANQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLRVV 122
Query: 233 VCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFW 292
C C SF +ES P
Sbjct: 123 RCTSCNNSF------------------EVESAPKIPP----------------------- 141
Query: 293 EEDFHIPTCQKCNGVLKPD----------DRADKAMEAAKECDAFLVLGSSLMTMSAYRL 342
+P C KC +L+P D D+AM + D +V G+S + A L
Sbjct: 142 -----LPKCDKCGSLLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAASL 196
Query: 343 VRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEIL 379
+ G I +N ET + + + GE++
Sbjct: 197 PLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVM 233
>pdb|3PKI|A Chain A, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|B Chain B, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|C Chain C, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|D Chain D, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|E Chain E, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|F Chain F, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKJ|A Chain A, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|B Chain B, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|C Chain C, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|D Chain D, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|E Chain E, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|F Chain F, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
Length = 355
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/311 (26%), Positives = 134/311 (43%), Gaps = 54/311 (17%)
Query: 91 SPKVLRDKKAVPDA-DPPSI--EDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNG 147
SP + K +P+ DPP + +L + S+ ++ TGAGIST GIPD+R P+G
Sbjct: 10 SPYADKGKCGLPEIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPHG 69
Query: 148 AYS---SGFKPITHQQFVXXXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRID 204
++ G P +F F +A+P H AL LE+ G +
Sbjct: 70 VWTMEERGLAP----KF-----------------DTTFESARPTQTHMALVQLERVGLLR 108
Query: 205 CMITQNVDRLHHRAG---SNPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAI 261
+++QNVD LH R+G ELHG ++ C C + RD V + K +
Sbjct: 109 FLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTV---VGTMGLKATGRL 165
Query: 262 ESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDDRADKAMEAA 321
++ ++ G++ G++ WE+ PD A EA+
Sbjct: 166 CTV-------AKARGLRA-CRGELRDTILDWEDSL-------------PDRDLALADEAS 204
Query: 322 KECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPR 381
+ D + LG+SL + L A G + IVN+ T+ D L+I + E++ R
Sbjct: 205 RNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTR 264
Query: 382 VLDVGSLSIPA 392
+++ L IPA
Sbjct: 265 LMEHLGLEIPA 275
>pdb|3K35|A Chain A, Crystal Structure Of Human Sirt6
pdb|3K35|B Chain B, Crystal Structure Of Human Sirt6
pdb|3K35|C Chain C, Crystal Structure Of Human Sirt6
pdb|3K35|D Chain D, Crystal Structure Of Human Sirt6
pdb|3K35|E Chain E, Crystal Structure Of Human Sirt6
pdb|3K35|F Chain F, Crystal Structure Of Human Sirt6
Length = 318
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 132/314 (42%), Gaps = 54/314 (17%)
Query: 88 APASPKVLRDKKAVPDA-DPPSI--EDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRS 144
A SP + K +P+ DPP + +L + S+ ++ TGAGIST GIPD+R
Sbjct: 7 AGLSPYADKGKCGLPEIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRG 66
Query: 145 PNGAYS---SGFKPITHQQFVXXXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAG 201
P+G ++ G P F +A+P H AL LE+ G
Sbjct: 67 PHGVWTMEERGLAP---------------------KFDTTFESARPTQTHMALVQLERVG 105
Query: 202 RIDCMITQNVDRLHHRAG---SNPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWA 258
+ +++QNVD LH R+G ELHG ++ C C + RD V + K
Sbjct: 106 LLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTV---VGTMGLKAT 162
Query: 259 EAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDDRADKAM 318
+ ++ ++ G++ G++ WE+ PD A
Sbjct: 163 GRLCTV-------AKARGLRA-CRGELRDTILDWEDSL-------------PDRDLALAD 201
Query: 319 EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEI 378
EA++ D + LG+SL + L A G + IVN+ T+ D L+I + E+
Sbjct: 202 EASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEV 261
Query: 379 LPRVLDVGSLSIPA 392
+ R++ L IPA
Sbjct: 262 MTRLMKHLGLEIPA 275
>pdb|4HDA|A Chain A, Crystal Structure Of Human Sirt5 In Complex With
Fluor-de-lys Peptide And Resveratrol
pdb|4HDA|B Chain B, Crystal Structure Of Human Sirt5 In Complex With
Fluor-de-lys Peptide And Resveratrol
Length = 275
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 116/284 (40%), Gaps = 44/284 (15%)
Query: 117 QFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXXXXXXXX 176
+FF + +++++GAG+S E G+P +R G Y ++ +
Sbjct: 18 KFFAKAKHIVIISGAGVSAESGVPTFRG-AGGYWRKWQAQDLATPLAFAHNPSRVWEFYH 76
Query: 177 XXXXXFMAAQPNPAHFALASLE----KAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYT 231
+ +PN H A+A E K GR +ITQN+D LH +AG+ N LE+HG+++
Sbjct: 77 YRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFK 136
Query: 232 VVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKF 291
C CG + ++ + P A+ PG+ D I +++
Sbjct: 137 TRCTSCGV-----VAENYKSPICP----ALSGKGAPEPGTQ---------DASIPVEK-- 176
Query: 292 WEEDFHIPTCQK--CNGVLKPD-----DRADKAM--EAAKE---CDAFLVLGSSLMTMSA 339
+P C++ C G+L+P + D A+ E +E CD LV+G+S + A
Sbjct: 177 ------LPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPA 230
Query: 340 YRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVL 383
G +A N T A + G LP L
Sbjct: 231 AMFAPQVAARGVPVAEFNTETTPATNRFRFHFQGPCGTTLPEAL 274
>pdb|2NYR|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5 In Complex
With Suramin
pdb|2NYR|B Chain B, Crystal Structure Of Human Sirtuin Homolog 5 In Complex
With Suramin
Length = 271
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 116/284 (40%), Gaps = 44/284 (15%)
Query: 117 QFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXXXXXXXX 176
+FF + +++++GAG+S E G+P +R G Y ++ +
Sbjct: 14 KFFAKAKHIVIISGAGVSAESGVPTFRG-AGGYWRKWQAQDLATPLAFAHNPSRVWEFYH 72
Query: 177 XXXXXFMAAQPNPAHFALASLE----KAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYT 231
+ +PN H A+A E K GR +ITQN+D LH +AG+ N LE+HG+++
Sbjct: 73 YRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFK 132
Query: 232 VVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKF 291
C CG + ++ + P A+ PG+ D I +++
Sbjct: 133 TRCTSCGV-----VAENYKSPICP----ALSGKGAPEPGTQ---------DASIPVEK-- 172
Query: 292 WEEDFHIPTCQK--CNGVLKPD-----DRADKAM--EAAKE---CDAFLVLGSSLMTMSA 339
+P C++ C G+L+P + D A+ E +E CD LV+G+S + A
Sbjct: 173 ------LPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPA 226
Query: 340 YRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVL 383
G +A N T A + G LP L
Sbjct: 227 AMFAPQVAARGVPVAEFNTETTPATNRFRFHFQGPCGTTLPEAL 270
>pdb|4G1C|A Chain A, Human Sirt5 Bound To Succ-Idh2 And Carba-Nad
pdb|4G1C|B Chain B, Human Sirt5 Bound To Succ-Idh2 And Carba-Nad
Length = 267
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 116/284 (40%), Gaps = 44/284 (15%)
Query: 117 QFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXXXXXXXX 176
+FF + +++++GAG+S E G+P +R G Y ++ +
Sbjct: 10 KFFAKAKHIVIISGAGVSAESGVPTFRG-AGGYWRKWQAQDLATPLAFAHNPSRVWEFYH 68
Query: 177 XXXXXFMAAQPNPAHFALASLE----KAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYT 231
+ +PN H A+A E K GR +ITQN+D LH +AG+ N LE+HG+++
Sbjct: 69 YRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFK 128
Query: 232 VVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKF 291
C CG + ++ + P A+ PG+ D I +++
Sbjct: 129 TRCTSCGV-----VAENYKSPICP----ALSGKGAPEPGTQ---------DASIPVEK-- 168
Query: 292 WEEDFHIPTCQK--CNGVLKPD-----DRADKAM--EAAKE---CDAFLVLGSSLMTMSA 339
+P C++ C G+L+P + D A+ E +E CD LV+G+S + A
Sbjct: 169 ------LPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPA 222
Query: 340 YRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVL 383
G +A N T A + G LP L
Sbjct: 223 AMFAPQVAARGVPVAEFNTETTPATNRFRFHFQGPCGTTLPEAL 266
>pdb|3RIG|A Chain A, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIG|B Chain B, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIY|A Chain A, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIY|B Chain B, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|4F4U|A Chain A, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F4U|B Chain B, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F56|A Chain A, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F56|B Chain B, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
Length = 273
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 116/284 (40%), Gaps = 44/284 (15%)
Query: 117 QFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXXXXXXXX 176
+FF + +++++GAG+S E G+P +R G Y ++ +
Sbjct: 16 KFFAKAKHIVIISGAGVSAESGVPTFRG-AGGYWRKWQAQDLATPLAFAHNPSRVWEFYH 74
Query: 177 XXXXXFMAAQPNPAHFALASLE----KAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYT 231
+ +PN H A+A E K GR +ITQN+D LH +AG+ N LE+HG+++
Sbjct: 75 YRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFK 134
Query: 232 VVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKF 291
C CG + ++ + P A+ PG+ D I +++
Sbjct: 135 TRCTSCGV-----VAENYKSPICP----ALSGKGAPEPGTQ---------DASIPVEK-- 174
Query: 292 WEEDFHIPTCQK--CNGVLKPD-----DRADKAM--EAAKE---CDAFLVLGSSLMTMSA 339
+P C++ C G+L+P + D A+ E +E CD LV+G+S + A
Sbjct: 175 ------LPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPA 228
Query: 340 YRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVL 383
G +A N T A + G LP L
Sbjct: 229 AMFAPQVAARGVPVAEFNTETTPATNRFRFHFQGPCGTTLPEAL 272
>pdb|2B4Y|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|B Chain B, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|C Chain C, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|D Chain D, Crystal Structure Of Human Sirtuin Homolog 5
Length = 271
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 116/284 (40%), Gaps = 44/284 (15%)
Query: 117 QFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXXXXXXXX 176
+FF + +++++GAG+S E G+P +R G Y ++ +
Sbjct: 14 KFFAKAKHIVIISGAGVSAESGVPTFRG-AGGYWRKWQAQDLATPLAFAHNPSRVWEFYH 72
Query: 177 XXXXXFMAAQPNPAHFALASLE----KAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYT 231
+ +PN H A+A E K GR +ITQN+D LH +AG+ N LE+HG+++
Sbjct: 73 YRREVXGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFK 132
Query: 232 VVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKF 291
C CG + ++ + P A+ PG+ D I +++
Sbjct: 133 TRCTSCGV-----VAENYKSPICP----ALSGKGAPEPGTQ---------DASIPVEK-- 172
Query: 292 WEEDFHIPTCQK--CNGVLKPD-----DRADKAM--EAAKE---CDAFLVLGSSLMTMSA 339
+P C++ C G+L+P + D A+ E +E CD LV+G+S + A
Sbjct: 173 ------LPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPA 226
Query: 340 YRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVL 383
G +A N T A + G LP L
Sbjct: 227 AXFAPQVAARGVPVAEFNTETTPATNRFRFHFQGPCGTTLPEAL 270
>pdb|3U31|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes
Medium And Long Chain Fatty Acyl Lysine
pdb|3U3D|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes
Medium And Long Chain Fatty Acyl Lysine
Length = 290
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/293 (23%), Positives = 113/293 (38%), Gaps = 55/293 (18%)
Query: 105 DPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXX 164
D SI + +L + ++ LTG+G S E IP +R + + S + P +
Sbjct: 29 DTQSI-TLEELAKIIKKCKHVVALTGSGTSAESNIPSFRGSSNSIWSKYDPRIYGTIWGF 87
Query: 165 XXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-L 223
+ + N H AL++LE G + ++TQNVD LH +G+ +
Sbjct: 88 WKYPEKIWEVIRDISSDY-EIEINNGHVALSTLESLGYLKSVVTQNVDGLHEASGNTKVI 146
Query: 224 ELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDG 283
LHG V+ VC C +++ LN + S M Q P
Sbjct: 147 SLHGNVFEAVCCTC----------NKIVKLNKIMLQ------------KTSHFMHQLP-- 182
Query: 284 DIEIDEKFWEEDFHIPTCQKCNGVLKPD----------DRADKAMEAAKECDAFLVLGSS 333
P C C G+ KP+ D +A E +CD LV+G+S
Sbjct: 183 ---------------PECP-CGGIFKPNIILFGEVVSSDLLKEAEEEIAKCDLLLVIGTS 226
Query: 334 LMTMSAYRLVRAAHEAGSTIAIVNVGETR-ADDLTTLKISARLGEILPRVLDV 385
+A L A + I +N+ +T + ++ + A+ E L +V ++
Sbjct: 227 STVSTATNLCHFACKKKKKIVEINISKTYITNKMSDYHVCAKFSE-LTKVANI 278
>pdb|3JWP|A Chain A, Crystal Structure Of Plasmodium Falciparum Sir2a
(Pf13_0152) In Complex With Amp
Length = 265
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/293 (22%), Positives = 110/293 (37%), Gaps = 55/293 (18%)
Query: 105 DPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXX 164
D SI + +L + ++ LTG+G S E IP +R + + S + P +
Sbjct: 4 DTQSI-TLEELAKIIKKCKHVVALTGSGTSAESNIPSFRGSSNSIWSKYDPRIYGTIWGF 62
Query: 165 XXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-L 223
+ + N H AL++LE G + ++TQNVD LH +G+ +
Sbjct: 63 WKYPEKIWEVIRDISSDY-EIEINNGHVALSTLESLGYLKSVVTQNVDGLHEASGNTKVI 121
Query: 224 ELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDG 283
LHG V+ VC C +++ LN + + P
Sbjct: 122 SLHGNVFEAVCCTC----------NKIVKLNKIXLQKTSHFXHQLP-------------- 157
Query: 284 DIEIDEKFWEEDFHIPTCQKCNGVLKPD----------DRADKAMEAAKECDAFLVLGSS 333
P C C G+ KP+ D +A E +CD LV+G+S
Sbjct: 158 ---------------PECP-CGGIFKPNIILFGEVVSSDLLKEAEEEIAKCDLLLVIGTS 201
Query: 334 LMTMSAYRLVRAAHEAGSTIAIVNVGETR-ADDLTTLKISARLGEILPRVLDV 385
+A L A + I +N+ +T + + + A+ E L +V ++
Sbjct: 202 STVSTATNLCHFACKKKKKIVEINISKTYITNKXSDYHVCAKFSE-LTKVANI 253
>pdb|1S5P|A Chain A, Structure And Substrate Binding Properties Of Cobb, A Sir2
Homolog Protein Deacetylase From Eschericia Coli
Length = 235
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 59/129 (45%), Gaps = 25/129 (19%)
Query: 124 KLIVLTGAGISTECGIPDYRSPNGAYSS----------GFK--PITHQQFVXXXXXXXXX 171
+++VLTGAGIS E GI +R+ +G + GF P Q F
Sbjct: 3 RVLVLTGAGISAESGIRTFRAADGLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQQ 62
Query: 172 XXXXXXXXXXFMAAQPNPAHFALASLEKA-GRIDCMITQNVDRLHHRAG-SNPLELHGTV 229
QPN AH ALA L+ A G ++TQN+D LH RAG +N + +HG +
Sbjct: 63 PEI-----------QPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAGNTNVIHMHGEL 111
Query: 230 YTVVCLDCG 238
V C G
Sbjct: 112 LKVRCSQSG 120
>pdb|4I5I|A Chain A, Crystal Structure Of The Sirt1 Catalytic Domain Bound To
Nad And An Ex527 Analog
pdb|4I5I|B Chain B, Crystal Structure Of The Sirt1 Catalytic Domain Bound To
Nad And An Ex527 Analog
Length = 287
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 63/138 (45%), Gaps = 9/138 (6%)
Query: 108 SIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSS---GFKPITHQQFVXX 164
+IED +L Q K+IVLTGAG+S CGIPD+RS +G Y+ F + Q +
Sbjct: 5 TIEDAVKLLQ---ECKKIIVLTGAGVSVSCGIPDFRSRDGIYARLAVDFPDLPDPQAMFD 61
Query: 165 XXXXXXXXXXXXXXXXXFMAA--QPNPAHFALASLEKAGRIDCMITQNVDRLHHRAG-SN 221
QP+ H +A +K G++ TQN+D L AG
Sbjct: 62 IEYFRKDPRPFFKFAKEIYPGQFQPSLCHKFIALSDKEGKLLRNYTQNIDTLEQVAGIQR 121
Query: 222 PLELHGTVYTVVCLDCGF 239
++ HG+ T CL C +
Sbjct: 122 IIQCHGSFATASCLICKY 139
>pdb|4IAO|A Chain A, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid
Domain Of Sir4
pdb|4IAO|B Chain B, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid
Domain Of Sir4
Length = 492
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 99/252 (39%), Gaps = 50/252 (19%)
Query: 112 INQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITH-----QQFVXXXX 166
I+ Q + K++VLTGAG+ST GIPD+RS G YS I H Q V
Sbjct: 174 IDHFIQKLHTARKILVLTGAGVSTSLGIPDFRSSEGFYSK----IKHLGLDDPQDVFNYN 229
Query: 167 XXXXXXXXXXXXXXXFMAAQP--NPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-- 222
+ + +P H + L+ G++ TQN+D L AG +
Sbjct: 230 IFMHDPSVFYNIANMVLPPEKIYSPLHSFIKMLQMKGKLLRNYTQNIDNLESYAGISTDK 289
Query: 223 -LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAI--ESLDYGSPGSDRSFG--- 276
++ HG+ T C+ C ++ + ++++ L + +Y G + G
Sbjct: 290 LVQCHGSFATATCVTCHWNLPGERIFNKIRNLELPLCPYCYKKRREYFPEGYNNKVGVAA 349
Query: 277 ----MKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPD---------DRADKAM-EAAK 322
M +RP P GVLKPD ++ K++ E
Sbjct: 350 SQGSMSERP-----------------PYILNSYGVLKPDITFFGEALPNKFHKSIREDIL 392
Query: 323 ECDAFLVLGSSL 334
ECD + +G+SL
Sbjct: 393 ECDLLICIGTSL 404
>pdb|2HJH|A Chain A, Crystal Structure Of The Sir2 Deacetylase
pdb|2HJH|B Chain B, Crystal Structure Of The Sir2 Deacetylase
Length = 354
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 101/254 (39%), Gaps = 36/254 (14%)
Query: 112 INQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITH-----QQFVXXXX 166
I+ Q + K++VLTGAG+ST GIPD+RS G YS I H Q V
Sbjct: 36 IDHFIQKLHTARKILVLTGAGVSTSLGIPDFRSSEGFYSK----IKHLGLDDPQDVFNYN 91
Query: 167 XXXXXXXXXXXXXXXFMAAQP--NPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-- 222
+ + +P H + L+ G++ TQN+D L AG +
Sbjct: 92 IFXHDPSVFYNIANXVLPPEKIYSPLHSFIKXLQXKGKLLRNYTQNIDNLESYAGISTDK 151
Query: 223 -LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAI--ESLDYGSPGSDRSFGMKQ 279
++ HG+ T C+ C ++ + ++++ L + +Y G + G+
Sbjct: 152 LVQCHGSFATATCVTCHWNLPGERIFNKIRNLELPLCPYCYKKRREYFPEGYNNKVGVAA 211
Query: 280 RPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPD---------DRADKAM-EAAKECDAFLV 329
E P GVLKPD ++ K++ E ECD +
Sbjct: 212 SQGSXSE----------RPPYILNSYGVLKPDITFFGEALPNKFHKSIREDILECDLLIC 261
Query: 330 LGSSLMTMSAYRLV 343
+G+SL +V
Sbjct: 262 IGTSLKVAPVSEIV 275
>pdb|4FVT|A Chain A, Human Sirt3 Bound To Ac-Acs Peptide And Carba-Nad
Length = 274
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 86/244 (35%), Gaps = 62/244 (25%)
Query: 108 SIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFK----PITHQQFVX 163
S++D+ +L + +++V+ GAGIST GIPD+RSP S + P F
Sbjct: 3 SLQDVAELIRA-RACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFEL 61
Query: 164 XXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAG---S 220
+PN H+ L L G + + TQN+D L +G S
Sbjct: 62 PFFFHNPKPFFTLAKELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPAS 121
Query: 221 NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSD-RSFGMKQ 279
+E HGT + C C F PG D R+ M
Sbjct: 122 KLVEAHGTFASATCTVCQRPF---------------------------PGEDIRADVMAD 154
Query: 280 RPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPD---------DRADKAMEAAKECDAFLVL 330
R +P C C GV+KPD R + D L+L
Sbjct: 155 R-----------------VPRCPVCTGVVKPDIVFFGEPLPQRFLLHVVDFPMADLLLIL 197
Query: 331 GSSL 334
G+SL
Sbjct: 198 GTSL 201
>pdb|3GLR|A Chain A, Crystal Structure Of Human Sirt3 With Acetyl-Lysine Acecs2
Peptide
pdb|3GLS|A Chain A, Crystal Structure Of Human Sirt3
pdb|3GLS|B Chain B, Crystal Structure Of Human Sirt3
pdb|3GLS|C Chain C, Crystal Structure Of Human Sirt3
pdb|3GLS|D Chain D, Crystal Structure Of Human Sirt3
pdb|3GLS|E Chain E, Crystal Structure Of Human Sirt3
pdb|3GLS|F Chain F, Crystal Structure Of Human Sirt3
pdb|3GLT|A Chain A, Crystal Structure Of Human Sirt3 With Adpr Bound To The
Acecs2 Peptide Containing A Thioacetyl Lysine
pdb|3GLU|A Chain A, Crystal Structure Of Human Sirt3 With Acecs2 Peptide
Length = 285
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 86/244 (35%), Gaps = 62/244 (25%)
Query: 108 SIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFK----PITHQQFVX 163
S++D+ +L + +++V+ GAGIST GIPD+RSP S + P F
Sbjct: 10 SLQDVAELIRA-RACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFEL 68
Query: 164 XXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAG---S 220
+PN H+ L L G + + TQN+D L +G S
Sbjct: 69 PFFFHNPKPFFTLAKELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPAS 128
Query: 221 NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSD-RSFGMKQ 279
+E HGT + C C F PG D R+ M
Sbjct: 129 KLVEAHGTFASATCTVCQRPF---------------------------PGEDIRADVMAD 161
Query: 280 RPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPD---------DRADKAMEAAKECDAFLVL 330
R +P C C GV+KPD R + D L+L
Sbjct: 162 R-----------------VPRCPVCTGVVKPDIVFFGEPLPQRFLLHVVDFPMADLLLIL 204
Query: 331 GSSL 334
G+SL
Sbjct: 205 GTSL 208
>pdb|4HD8|A Chain A, Crystal Structure Of Human Sirt3 In Complex With
Fluor-de-lys Peptide And Piceatannol
Length = 284
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 86/244 (35%), Gaps = 62/244 (25%)
Query: 108 SIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFK----PITHQQFVX 163
S++D+ +L + +++V+ GAGIST GIPD+RSP S + P F
Sbjct: 9 SLQDVAELIRA-RACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFEL 67
Query: 164 XXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAG---S 220
+PN H+ L L G + + TQN+D L +G S
Sbjct: 68 PFFFHNPKPFFTLAKELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPAS 127
Query: 221 NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSD-RSFGMKQ 279
+E HGT + C C F PG D R+ M
Sbjct: 128 KLVEAHGTFASATCTVCQRPF---------------------------PGEDIRADVMAD 160
Query: 280 RPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPD---------DRADKAMEAAKECDAFLVL 330
R +P C C GV+KPD R + D L+L
Sbjct: 161 R-----------------VPRCPVCTGVVKPDIVFFGEPLPQRFLLHVVDFPMADLLLIL 203
Query: 331 GSSL 334
G+SL
Sbjct: 204 GTSL 207
>pdb|1SZC|A Chain A, Structural Basis For Nicotinamide Cleavage And Adp-Ribose
Transfer By Nad+-Dependent Sir2 HistonePROTEIN
DEACETYLASES
pdb|1SZD|A Chain A, Structural Basis For Nicotinamide Cleavage And Adp-Ribose
Transfer By Nad+-Dependent Sir2 HistonePROTEIN
DEACETYLASES
Length = 297
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 7/136 (5%)
Query: 122 SAKLIVLTGAGISTECGIPDYRSP-NGAYSSGFK---PITHQQFVXXXXXXXXXXXXXXX 177
+AK+I + GAGIST CGIPD+RSP G Y + + P F
Sbjct: 27 NAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLA 86
Query: 178 XXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP---LELHGTVYTVVC 234
+P+ H+ L + + + TQN+D L +AG +E HG+ C
Sbjct: 87 KELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHC 146
Query: 235 LDCGFSFCRDLFQDQV 250
+ CG + +F+ ++
Sbjct: 147 IGCGKVYPPQVFKSKL 162
>pdb|1Q14|A Chain A, Structure And Autoregulation Of The Yeast Hst2 Homolog Of
Sir2
Length = 361
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 7/136 (5%)
Query: 122 SAKLIVLTGAGISTECGIPDYRSP-NGAYSSGFK---PITHQQFVXXXXXXXXXXXXXXX 177
+AK+I + GAGIST CGIPD+RSP G Y + + P F
Sbjct: 28 NAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLA 87
Query: 178 XXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP---LELHGTVYTVVC 234
+P+ H+ L + + + TQN+D L +AG +E HG+ C
Sbjct: 88 KELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHC 147
Query: 235 LDCGFSFCRDLFQDQV 250
+ CG + +F+ ++
Sbjct: 148 IGCGKVYPPQVFKSKL 163
>pdb|1Q1A|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
Length = 289
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 7/136 (5%)
Query: 122 SAKLIVLTGAGISTECGIPDYRSP-NGAYSSGFK---PITHQQFVXXXXXXXXXXXXXXX 177
+AK+I + GAGIST CGIPD+RSP G Y + + P F
Sbjct: 20 NAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLA 79
Query: 178 XXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP---LELHGTVYTVVC 234
+P+ H+ L + + + TQN+D L +AG +E HG+ C
Sbjct: 80 KELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHC 139
Query: 235 LDCGFSFCRDLFQDQV 250
+ CG + +F+ ++
Sbjct: 140 IGCGKVYPPQVFKSKL 155
>pdb|2OD7|A Chain A, Crystal Structure Of Yhst2 Bound To The Intermediate
Analogue Adp-Hpd, And And Aceylated H4 Peptide
pdb|2OD9|A Chain A, Structural Basis For Nicotinamide Inhibition And Base
Exchange In Sir2 Enzymes
pdb|2QQF|A Chain A, Hst2 Bound To Adp-Hpd And Acetylated Histone H4
pdb|2QQG|A Chain A, Hst2 Bound To Adp-hpd, Acetyllated Histone H4 And
Nicotinamide
Length = 308
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 7/136 (5%)
Query: 122 SAKLIVLTGAGISTECGIPDYRSP-NGAYSSGFK---PITHQQFVXXXXXXXXXXXXXXX 177
+AK+I + GAGIST CGIPD+RSP G Y + + P F
Sbjct: 38 NAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLA 97
Query: 178 XXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP---LELHGTVYTVVC 234
+P+ H+ L + + + TQN+D L +AG +E HG+ C
Sbjct: 98 KELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHC 157
Query: 235 LDCGFSFCRDLFQDQV 250
+ CG + +F+ ++
Sbjct: 158 IGCGKVYPPQVFKSKL 173
>pdb|1Q17|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
pdb|1Q17|B Chain B, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
pdb|1Q17|C Chain C, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
Length = 300
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 7/136 (5%)
Query: 122 SAKLIVLTGAGISTECGIPDYRSP-NGAYSSGFK---PITHQQFVXXXXXXXXXXXXXXX 177
+AK+I + GAGIST CGIPD+RSP G Y + + P F
Sbjct: 30 NAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLA 89
Query: 178 XXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP---LELHGTVYTVVC 234
+P+ H+ L + + + TQN+D L +AG +E HG+ C
Sbjct: 90 KELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHC 149
Query: 235 LDCGFSFCRDLFQDQV 250
+ CG + +F+ ++
Sbjct: 150 IGCGKVYPPQVFKSKL 165
>pdb|2OD2|A Chain A, Crystal Structure Of Yhst2 I117f Mutant Bound To
Carba-Nad+ And An Acetylated H4 Peptide
Length = 308
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 7/136 (5%)
Query: 122 SAKLIVLTGAGISTECGIPDYRSP-NGAYSSGFK---PITHQQFVXXXXXXXXXXXXXXX 177
+AK+I + GAGIST CGIPD+RSP G Y + + P F
Sbjct: 38 NAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLA 97
Query: 178 XXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP---LELHGTVYTVVC 234
+P+ H+ L + + + TQN D L +AG +E HG+ C
Sbjct: 98 KELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNFDTLERQAGVKDDLIIEAHGSFAHCHC 157
Query: 235 LDCGFSFCRDLFQDQV 250
+ CG + +F+ ++
Sbjct: 158 IGCGKVYPPQVFKSKL 173
>pdb|1J8F|A Chain A, Human Sirt2 Histone Deacetylase
Length = 323
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 52/119 (43%), Gaps = 7/119 (5%)
Query: 124 KLIVLTGAGISTECGIPDYRSPN-GAYSSGFK---PITHQQFVXXXXXXXXXXXXXXXXX 179
++I L GAGIST GIPD+RSP+ G Y + K P F
Sbjct: 45 RVICLVGAGISTSAGIPDFRSPSTGLYDNLEKYHLPYPEAIFEISYFKKHPEPFFALAKE 104
Query: 180 XXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAG---SNPLELHGTVYTVVCL 235
+P H+ + L+ G + TQN+D L AG + +E HGT YT C+
Sbjct: 105 LYPGQFKPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTSHCV 163
>pdb|1J8F|C Chain C, Human Sirt2 Histone Deacetylase
pdb|1J8F|B Chain B, Human Sirt2 Histone Deacetylase
Length = 323
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 52/119 (43%), Gaps = 7/119 (5%)
Query: 124 KLIVLTGAGISTECGIPDYRSPN-GAYSSGFK---PITHQQFVXXXXXXXXXXXXXXXXX 179
++I L GAGIST GIPD+RSP+ G Y + K P F
Sbjct: 45 RVICLVGAGISTSAGIPDFRSPSTGLYDNLEKYHLPYPEAIFEISYFKKHPEPFFALAKE 104
Query: 180 XXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAG---SNPLELHGTVYTVVCL 235
+P H+ + L+ G + TQN+D L AG + +E HGT YT C+
Sbjct: 105 LYPGQFKPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTSHCV 163
>pdb|1K7Y|A Chain A, E. Coli Meth C-Terminal Fragment (649-1227)
pdb|1K98|A Chain A, Adomet Complex Of Meth C-Terminal Fragment
Length = 577
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 306 GVLKPDDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHE---AGSTIAIVNVGETR 362
GV+ P A+K + AKE +A L+ S L+T S +V A E G TI ++ G T
Sbjct: 131 GVMVP---AEKILRTAKEVNADLIGLSGLITPSLDEMVNVAKEMERQGFTIPLLIGGATT 187
Query: 363 ADDLTTLKIS 372
+ T +KI
Sbjct: 188 SKAHTAVKIE 197
>pdb|3BUL|A Chain A, E. Coli I690cG743C METH C-Terminal Fragment (649-1227)
pdb|3IV9|A Chain A, Structure Of The B12-Dependent Methionine Synthase (Meth)
C-Teminal Half In A "his-On" Conformation
pdb|3IVA|A Chain A, Structure Of The B12-Dependent Methionine Synthase (Meth)
C-Teminal Half With Adohcy Bound
Length = 579
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 306 GVLKPDDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHE---AGSTIAIVNVGETR 362
GV+ P A+K + AKE +A L+ S L+T S +V A E G TI ++ G T
Sbjct: 133 GVMVP---AEKILRTAKEVNADLIGLSGLITPSLDEMVNVAKEMERQGFTIPLLIGGATT 189
Query: 363 ADDLTTLKIS 372
+ T +KI
Sbjct: 190 SKAHTAVKIE 199
>pdb|1BMT|A Chain A, How A Protein Binds B12: A 3.O Angstrom X-Ray Structure Of
The B12-Binding Domains Of Methionine Synthase
pdb|1BMT|B Chain B, How A Protein Binds B12: A 3.O Angstrom X-Ray Structure Of
The B12-Binding Domains Of Methionine Synthase
Length = 246
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 306 GVLKPDDRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEA---GSTIAIVNVGETR 362
GV+ P A+K + AKE +A L+ S L+T S +V A E G TI ++ G T
Sbjct: 131 GVMVP---AEKILRTAKEVNADLIGLSGLITPSLDEMVNVAKEMERQGFTIPLLIGGATT 187
Query: 363 ADDLTTLKI 371
+ T +KI
Sbjct: 188 SKAHTAVKI 196
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,110,167
Number of Sequences: 62578
Number of extensions: 428164
Number of successful extensions: 981
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 870
Number of HSP's gapped (non-prelim): 85
length of query: 393
length of database: 14,973,337
effective HSP length: 101
effective length of query: 292
effective length of database: 8,652,959
effective search space: 2526664028
effective search space used: 2526664028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)