Query 016198
Match_columns 393
No_of_seqs 148 out of 1299
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 04:41:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016198.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016198hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2683 Sirtuin 4 and related 100.0 8E-70 1.7E-74 503.8 22.9 287 81-382 6-305 (305)
2 cd01409 SIRT4 SIRT4: Eukaryoti 100.0 1.2E-60 2.6E-65 460.6 24.1 249 115-379 1-260 (260)
3 PRK05333 NAD-dependent deacety 100.0 6.3E-59 1.4E-63 454.2 28.2 264 109-389 6-280 (285)
4 PRK14138 NAD-dependent deacety 100.0 5.8E-57 1.3E-61 431.4 25.5 231 113-389 2-244 (244)
5 COG0846 SIR2 NAD-dependent pro 100.0 1.3E-55 2.8E-60 421.5 20.8 230 112-387 2-246 (250)
6 PTZ00409 Sir2 (Silent Informat 100.0 7.5E-55 1.6E-59 422.2 24.6 232 109-386 15-262 (271)
7 PRK00481 NAD-dependent deacety 100.0 1.9E-54 4.1E-59 413.4 25.0 225 111-386 2-240 (242)
8 cd01413 SIR2_Af2 SIR2_Af2: Arc 100.0 1.6E-53 3.4E-58 402.4 21.2 208 119-374 1-222 (222)
9 cd01408 SIRT1 SIRT1: Eukaryoti 100.0 2.1E-53 4.5E-58 404.8 22.2 211 123-382 1-235 (235)
10 PTZ00408 NAD-dependent deacety 100.0 1.6E-52 3.6E-57 400.0 22.3 218 120-386 2-235 (242)
11 cd01411 SIR2H SIR2H: Uncharact 100.0 1.1E-52 2.4E-57 397.5 20.4 209 115-379 1-225 (225)
12 cd01412 SIRT5_Af1_CobB SIRT5_A 100.0 5.9E-52 1.3E-56 391.5 22.4 211 123-383 1-224 (224)
13 cd01410 SIRT7 SIRT7: Eukaryoti 100.0 9.4E-52 2E-56 386.3 20.3 193 123-374 1-206 (206)
14 cd01407 SIR2-fam SIR2 family o 100.0 5E-51 1.1E-55 384.0 22.5 204 123-374 1-218 (218)
15 PTZ00410 NAD-dependent SIR2; P 100.0 7.7E-49 1.7E-53 389.5 24.7 233 109-388 14-324 (349)
16 cd00296 SIR2 SIR2 superfamily 100.0 8.4E-45 1.8E-49 340.7 21.1 203 123-374 1-222 (222)
17 KOG2684 Sirtuin 5 and related 100.0 3.5E-44 7.6E-49 355.9 17.6 297 38-392 5-347 (412)
18 KOG1905 Class IV sirtuins (SIR 100.0 4.5E-45 9.7E-50 348.3 10.1 228 109-392 42-285 (353)
19 PF02146 SIR2: Sir2 family; I 100.0 1.5E-43 3.3E-48 323.1 9.8 164 130-338 1-178 (178)
20 KOG2682 NAD-dependent histone 100.0 1.2E-40 2.5E-45 309.8 12.6 230 110-388 22-280 (314)
21 cd01406 SIR2-like Sir2-like: P 98.9 1.1E-08 2.4E-13 97.6 12.6 96 123-218 1-112 (242)
22 COG0028 IlvB Thiamine pyrophos 96.1 0.063 1.4E-06 57.7 12.4 69 316-387 259-329 (550)
23 PF00205 TPP_enzyme_M: Thiamin 95.6 0.012 2.6E-07 51.0 3.6 66 316-382 70-137 (137)
24 COG3962 Acetolactate synthase 95.5 0.11 2.3E-06 54.4 10.6 93 38-133 142-240 (617)
25 PF13289 SIR2_2: SIR2-like dom 94.4 0.27 5.8E-06 42.1 8.7 48 314-361 76-127 (143)
26 PRK07979 acetolactate synthase 93.0 0.13 2.8E-06 55.3 5.1 69 316-386 265-335 (574)
27 PRK08979 acetolactate synthase 92.8 0.13 2.8E-06 55.3 4.8 69 316-386 265-335 (572)
28 PRK07418 acetolactate synthase 92.7 0.15 3.2E-06 55.4 5.1 69 316-386 283-353 (616)
29 PRK06882 acetolactate synthase 92.7 0.15 3.3E-06 54.7 5.0 69 316-386 265-335 (574)
30 PRK06466 acetolactate synthase 92.4 0.17 3.7E-06 54.3 5.0 69 316-386 265-335 (574)
31 PRK08322 acetolactate synthase 92.3 0.22 4.7E-06 53.1 5.6 68 317-387 256-325 (547)
32 PRK09107 acetolactate synthase 92.2 0.19 4.1E-06 54.4 5.1 69 316-386 273-343 (595)
33 PRK07524 hypothetical protein; 92.1 0.16 3.6E-06 53.9 4.4 72 315-387 255-329 (535)
34 TIGR01504 glyox_carbo_lig glyo 92.0 0.17 3.6E-06 54.7 4.4 69 316-386 262-332 (588)
35 CHL00099 ilvB acetohydroxyacid 91.9 0.22 4.8E-06 53.7 5.2 69 317-387 277-347 (585)
36 PRK07789 acetolactate synthase 91.8 0.22 4.7E-06 54.1 5.0 69 316-386 290-360 (612)
37 PLN02470 acetolactate synthase 91.8 0.23 5E-06 53.5 5.2 68 317-386 273-342 (585)
38 PRK08527 acetolactate synthase 91.8 0.23 4.9E-06 53.3 5.1 69 317-387 263-333 (563)
39 PRK07282 acetolactate synthase 91.7 0.24 5.3E-06 53.2 5.1 69 316-386 269-339 (566)
40 PRK06725 acetolactate synthase 91.6 0.24 5.1E-06 53.4 5.0 69 317-387 274-344 (570)
41 TIGR00173 menD 2-succinyl-5-en 91.4 0.55 1.2E-05 48.7 7.3 64 319-386 271-336 (432)
42 TIGR00118 acolac_lg acetolacta 91.3 0.26 5.6E-06 52.7 4.9 69 316-386 260-330 (558)
43 PRK08273 thiamine pyrophosphat 91.1 0.3 6.6E-06 52.8 5.2 67 316-387 265-333 (597)
44 PRK06154 hypothetical protein; 91.1 0.31 6.7E-06 52.4 5.2 66 317-386 274-341 (565)
45 PRK11269 glyoxylate carboligas 91.0 0.29 6.4E-06 52.8 5.0 69 316-386 263-333 (591)
46 PRK08611 pyruvate oxidase; Pro 90.8 0.47 1E-05 51.1 6.3 64 317-387 261-326 (576)
47 TIGR02418 acolac_catab acetola 90.8 0.4 8.6E-06 51.1 5.7 67 317-386 256-324 (539)
48 PRK08155 acetolactate synthase 90.8 0.39 8.5E-06 51.5 5.6 68 317-386 271-340 (564)
49 PRK06048 acetolactate synthase 90.8 0.33 7.3E-06 52.0 5.1 69 317-387 267-337 (561)
50 PRK06456 acetolactate synthase 90.7 0.34 7.5E-06 51.9 5.2 69 317-386 267-337 (572)
51 PRK06112 acetolactate synthase 90.6 0.29 6.3E-06 52.6 4.5 69 316-386 277-346 (578)
52 PRK06546 pyruvate dehydrogenas 90.4 0.44 9.5E-06 51.4 5.7 63 317-387 259-323 (578)
53 PRK07525 sulfoacetaldehyde ace 90.4 0.3 6.6E-06 52.6 4.4 69 317-387 260-333 (588)
54 PRK06965 acetolactate synthase 90.4 0.43 9.2E-06 51.5 5.5 70 316-386 280-351 (587)
55 PRK08978 acetolactate synthase 90.1 0.36 7.8E-06 51.5 4.6 68 317-386 256-325 (548)
56 PRK08266 hypothetical protein; 90.0 0.29 6.3E-06 52.1 3.8 68 317-387 257-325 (542)
57 TIGR03457 sulphoacet_xsc sulfo 89.8 0.34 7.3E-06 52.2 4.1 69 317-387 256-329 (579)
58 PRK06276 acetolactate synthase 89.6 0.42 9.2E-06 51.5 4.8 69 316-386 262-332 (586)
59 PRK08327 acetolactate synthase 89.5 0.44 9.5E-06 51.2 4.8 67 317-387 273-344 (569)
60 PRK08199 thiamine pyrophosphat 89.2 0.48 1E-05 50.7 4.8 70 317-386 264-336 (557)
61 PRK05858 hypothetical protein; 89.2 0.69 1.5E-05 49.4 5.9 68 316-387 255-324 (542)
62 PRK07710 acetolactate synthase 88.9 0.58 1.3E-05 50.3 5.1 68 317-386 275-344 (571)
63 PRK08617 acetolactate synthase 88.1 0.74 1.6E-05 49.2 5.2 67 317-386 262-330 (552)
64 PRK09124 pyruvate dehydrogenas 88.0 0.96 2.1E-05 48.6 6.0 62 318-386 260-323 (574)
65 TIGR03254 oxalate_oxc oxalyl-C 87.6 0.76 1.6E-05 49.2 5.0 68 318-386 260-329 (554)
66 PF07295 DUF1451: Protein of u 87.5 0.4 8.6E-06 42.9 2.4 11 297-307 129-139 (146)
67 TIGR02720 pyruv_oxi_spxB pyruv 87.3 0.94 2E-05 48.8 5.5 67 317-387 258-326 (575)
68 PRK09259 putative oxalyl-CoA d 87.2 0.78 1.7E-05 49.3 4.9 68 318-386 267-336 (569)
69 smart00834 CxxC_CXXC_SSSS Puta 87.1 0.42 9.1E-06 32.7 1.8 13 230-242 4-16 (41)
70 PRK11032 hypothetical protein; 86.3 0.49 1.1E-05 43.0 2.2 10 297-306 141-150 (160)
71 PRK07064 hypothetical protein; 86.2 1 2.2E-05 47.9 5.1 68 316-386 257-326 (544)
72 PLN02573 pyruvate decarboxylas 85.4 0.67 1.5E-05 50.0 3.2 67 317-386 285-351 (578)
73 cd02766 MopB_3 The MopB_3 CD i 85.1 1.8 3.8E-05 45.9 6.1 54 319-372 153-208 (501)
74 COG0777 AccD Acetyl-CoA carbox 83.8 3.9 8.5E-05 40.3 7.3 14 348-361 193-206 (294)
75 cd02750 MopB_Nitrate-R-NarG-li 83.7 2.2 4.8E-05 44.5 6.1 54 319-372 166-221 (461)
76 cd02765 MopB_4 The MopB_4 CD i 83.2 2.3 5.1E-05 45.7 6.2 54 319-372 155-210 (567)
77 PRK07092 benzoylformate decarb 83.1 1 2.3E-05 47.8 3.4 72 315-387 264-336 (530)
78 PRK06457 pyruvate dehydrogenas 82.9 2.6 5.7E-05 45.1 6.4 59 317-382 253-313 (549)
79 PF09723 Zn-ribbon_8: Zinc rib 82.8 0.91 2E-05 31.9 1.9 14 229-242 3-16 (42)
80 PRK06266 transcription initiat 82.7 1.9 4.1E-05 39.8 4.5 13 299-311 137-149 (178)
81 cd02768 MopB_NADH-Q-OR-NuoG2 M 81.8 5.5 0.00012 40.1 7.9 55 319-375 144-201 (386)
82 TIGR03393 indolpyr_decarb indo 81.7 0.72 1.6E-05 49.2 1.6 68 316-386 265-334 (539)
83 TIGR00373 conserved hypothetic 81.3 2.2 4.7E-05 38.5 4.3 13 299-311 129-141 (158)
84 PRK07449 2-succinyl-5-enolpyru 80.9 3 6.5E-05 44.7 6.0 62 317-381 280-343 (568)
85 cd02753 MopB_Formate-Dh-H Form 80.9 3.4 7.4E-05 43.5 6.3 54 319-372 152-207 (512)
86 CHL00174 accD acetyl-CoA carbo 80.7 5 0.00011 40.0 6.9 24 337-360 155-178 (296)
87 cd02759 MopB_Acetylene-hydrata 80.5 3.1 6.6E-05 43.6 5.7 53 320-372 157-212 (477)
88 cd02752 MopB_Formate-Dh-Na-lik 79.5 3.9 8.5E-05 45.0 6.3 54 319-372 165-221 (649)
89 PRK11916 electron transfer fla 79.0 4.5 9.8E-05 40.6 6.1 59 323-386 251-310 (312)
90 PRK14873 primosome assembly pr 78.8 7.2 0.00016 43.1 8.1 43 189-239 357-400 (665)
91 cd00368 Molybdopterin-Binding 78.6 4.8 0.0001 40.1 6.2 53 319-371 152-206 (374)
92 COG3383 Uncharacterized anaero 78.6 2.6 5.6E-05 46.8 4.5 61 318-378 415-478 (978)
93 cd02767 MopB_ydeP The MopB_yde 78.3 5 0.00011 43.5 6.6 43 319-361 159-203 (574)
94 PRK03363 fixB putative electro 78.0 5.2 0.00011 40.2 6.2 59 323-386 252-311 (313)
95 TIGR01553 formate-DH-alph form 77.9 4.7 0.0001 46.7 6.6 54 319-372 217-272 (1009)
96 PLN00022 electron transfer fla 77.4 4.5 9.7E-05 41.4 5.6 60 323-387 293-353 (356)
97 KOG1185 Thiamine pyrophosphate 77.3 1.1 2.4E-05 47.3 1.2 68 319-387 272-342 (571)
98 PRK09939 putative oxidoreducta 77.3 5.6 0.00012 44.6 6.8 43 319-361 204-248 (759)
99 TIGR01591 Fdh-alpha formate de 77.0 5.3 0.00012 43.6 6.5 53 319-371 151-205 (671)
100 cd02755 MopB_Thiosulfate-R-lik 77.0 3.5 7.6E-05 43.0 4.9 53 320-372 153-208 (454)
101 COG0549 ArcC Carbamate kinase 77.0 5 0.00011 39.9 5.6 87 98-222 160-246 (312)
102 PRK05654 acetyl-CoA carboxylas 76.6 9.5 0.00021 38.0 7.5 24 337-360 143-166 (292)
103 TIGR00515 accD acetyl-CoA carb 76.5 14 0.0003 36.7 8.7 23 337-359 142-164 (285)
104 cd02754 MopB_Nitrate-R-NapA-li 76.5 4.5 9.9E-05 43.2 5.7 53 320-372 154-210 (565)
105 TIGR03479 DMSO_red_II_alp DMSO 76.4 3.6 7.8E-05 47.0 5.1 54 319-372 220-275 (912)
106 cd02762 MopB_1 The MopB_1 CD i 75.6 4.5 9.7E-05 43.1 5.3 53 320-372 153-213 (539)
107 cd05014 SIS_Kpsf KpsF-like pro 75.0 7.3 0.00016 32.7 5.5 55 320-374 44-99 (128)
108 TIGR02098 MJ0042_CXXC MJ0042 f 74.7 1.7 3.7E-05 29.4 1.2 12 231-242 2-13 (38)
109 TIGR02605 CxxC_CxxC_SSSS putat 74.2 2.3 5.1E-05 30.7 1.9 14 229-242 3-16 (52)
110 PRK06260 threonine synthase; V 74.1 1.7 3.6E-05 44.8 1.5 13 230-242 2-14 (397)
111 cd02770 MopB_DmsA-EC This CD ( 72.9 8 0.00017 42.1 6.5 54 319-372 162-221 (617)
112 PF14353 CpXC: CpXC protein 72.9 1.2 2.7E-05 38.3 0.2 15 297-311 37-51 (128)
113 cd02763 MopB_2 The MopB_2 CD i 72.2 7.8 0.00017 43.0 6.2 54 319-372 151-206 (679)
114 TIGR00509 bisC_fam molybdopter 71.6 7.7 0.00017 43.4 6.1 51 321-371 165-226 (770)
115 cd02772 MopB_NDH-1_NuoG2 MopB_ 71.2 11 0.00023 38.6 6.6 44 319-362 148-193 (414)
116 PF00384 Molybdopterin: Molybd 70.8 5.6 0.00012 40.4 4.5 53 320-372 108-163 (432)
117 TIGR01701 Fdhalpha-like oxidor 70.3 10 0.00022 42.5 6.7 44 319-362 194-239 (743)
118 COG2025 FixB Electron transfer 70.3 10 0.00022 38.2 6.0 60 323-387 251-311 (313)
119 PRK07591 threonine synthase; V 69.8 2.9 6.2E-05 43.5 2.1 14 229-242 16-29 (421)
120 TIGR03394 indol_phenyl_DC indo 69.8 2.5 5.4E-05 45.2 1.7 68 316-386 261-330 (535)
121 PRK00398 rpoP DNA-directed RNA 69.2 3.6 7.9E-05 29.2 1.9 12 231-242 3-14 (46)
122 cd02758 MopB_Tetrathionate-Ra 68.9 8.2 0.00018 43.2 5.6 54 319-372 207-269 (735)
123 PRK00564 hypA hydrogenase nick 68.6 2.9 6.3E-05 35.9 1.6 20 223-242 63-82 (117)
124 TIGR00595 priA primosomal prot 68.5 20 0.00044 38.3 8.2 12 299-310 254-266 (505)
125 COG1110 Reverse gyrase [DNA re 68.4 5 0.00011 46.1 3.7 37 299-336 709-747 (1187)
126 cd02773 MopB_Res-Cmplx1_Nad11 68.4 16 0.00034 37.0 7.1 50 319-368 141-193 (375)
127 smart00531 TFIIE Transcription 68.4 3.3 7.1E-05 36.8 1.9 13 299-311 124-136 (147)
128 cd02760 MopB_Phenylacetyl-CoA- 68.3 8.1 0.00018 43.4 5.4 54 319-372 169-225 (760)
129 PRK13937 phosphoheptose isomer 68.2 13 0.00027 34.2 5.9 55 320-374 103-158 (188)
130 TIGR01973 NuoG NADH-quinone ox 68.0 11 0.00024 40.9 6.2 54 318-371 357-413 (603)
131 PRK12496 hypothetical protein; 67.7 3.6 7.8E-05 37.4 2.1 12 231-242 127-138 (164)
132 COG1198 PriA Primosomal protei 67.2 11 0.00023 42.2 6.0 24 216-239 428-452 (730)
133 TIGR00354 polC DNA polymerase, 66.8 4.2 9.2E-05 46.2 2.7 20 224-243 1000-1024(1095)
134 cd05710 SIS_1 A subgroup of th 66.8 12 0.00027 31.5 5.1 57 320-376 44-101 (120)
135 TIGR03127 RuMP_HxlB 6-phospho 66.7 12 0.00025 33.7 5.2 52 321-372 70-122 (179)
136 cd05006 SIS_GmhA Phosphoheptos 66.5 17 0.00036 32.7 6.2 54 320-373 98-152 (177)
137 PRK07860 NADH dehydrogenase su 66.5 11 0.00024 42.4 6.1 54 318-371 371-428 (797)
138 cd02769 MopB_DMSOR-BSOR-TMAOR 65.9 11 0.00023 41.1 5.6 48 321-368 168-226 (609)
139 cd00729 rubredoxin_SM Rubredox 65.6 5.2 0.00011 26.8 2.0 12 231-242 2-13 (34)
140 PRK15488 thiosulfate reductase 65.1 12 0.00025 41.8 5.9 53 320-372 193-249 (759)
141 PF04016 DUF364: Domain of unk 65.1 12 0.00025 33.4 4.8 70 316-386 55-132 (147)
142 COG1773 Rubredoxin [Energy pro 65.0 8.1 0.00018 29.0 3.1 14 230-243 2-15 (55)
143 PRK06450 threonine synthase; V 64.3 4.2 9E-05 41.1 2.0 11 232-242 4-14 (338)
144 TIGR03844 cysteate_syn cysteat 63.7 4.2 9.1E-05 42.1 1.9 13 230-242 1-13 (398)
145 cd05008 SIS_GlmS_GlmD_1 SIS (S 63.6 15 0.00033 30.6 5.1 55 321-375 44-99 (126)
146 PF13719 zinc_ribbon_5: zinc-r 63.5 4.4 9.6E-05 27.6 1.4 12 231-242 2-13 (37)
147 cd00350 rubredoxin_like Rubred 63.4 5.7 0.00012 26.3 1.9 11 232-242 2-12 (33)
148 PF13717 zinc_ribbon_4: zinc-r 63.1 5.2 0.00011 27.2 1.7 13 231-243 2-14 (36)
149 cd02757 MopB_Arsenate-R This C 62.4 19 0.00041 38.4 6.7 53 320-372 159-215 (523)
150 PF09845 DUF2072: Zn-ribbon co 61.8 3.4 7.3E-05 36.4 0.7 11 232-242 2-12 (131)
151 PRK04023 DNA polymerase II lar 61.8 6.1 0.00013 45.2 2.8 20 224-243 1025-1049(1121)
152 COG1379 PHP family phosphoeste 61.6 2.8 6.1E-05 42.2 0.2 17 227-243 242-258 (403)
153 PRK05580 primosome assembly pr 61.6 15 0.00032 40.7 5.8 9 299-307 422-430 (679)
154 TIGR03471 HpnJ hopanoid biosyn 61.1 42 0.00091 35.2 8.9 70 317-386 62-140 (472)
155 COG1579 Zn-ribbon protein, pos 61.0 4.9 0.00011 38.9 1.7 12 297-308 220-231 (239)
156 PRK14714 DNA polymerase II lar 60.9 6.3 0.00014 46.1 2.8 20 224-243 1241-1265(1337)
157 PF04574 DUF592: Protein of un 59.5 7.9 0.00017 34.9 2.6 23 107-129 131-153 (153)
158 PF13248 zf-ribbon_3: zinc-rib 59.4 5.1 0.00011 25.1 1.0 10 299-308 17-26 (26)
159 cd02751 MopB_DMSOR-like The Mo 59.2 22 0.00048 38.5 6.6 50 323-372 169-229 (609)
160 PRK03681 hypA hydrogenase nick 59.2 5.6 0.00012 34.0 1.6 20 223-242 62-81 (114)
161 PRK12380 hydrogenase nickel in 58.9 5.7 0.00012 33.9 1.6 20 223-242 62-81 (113)
162 cd02774 MopB_Res-Cmplx1_Nad11- 58.7 21 0.00046 36.5 6.0 43 318-360 143-188 (366)
163 COG3364 Zn-ribbon containing p 58.3 3.4 7.4E-05 34.8 0.1 11 232-242 3-13 (112)
164 PF09538 FYDLN_acid: Protein o 58.0 7 0.00015 33.2 2.0 13 299-311 27-39 (108)
165 PRK09129 NADH dehydrogenase su 57.1 30 0.00065 38.8 7.3 46 318-363 365-412 (776)
166 COG0761 lytB 4-Hydroxy-3-methy 57.0 24 0.00053 35.1 5.8 63 312-375 201-267 (294)
167 TIGR02166 dmsA_ynfE anaerobic 56.8 24 0.00052 39.5 6.5 54 319-372 210-270 (797)
168 PF02591 DUF164: Putative zinc 55.7 9.3 0.0002 28.2 2.1 12 297-308 45-56 (56)
169 PF13580 SIS_2: SIS domain; PD 54.6 32 0.0007 29.8 5.7 36 321-356 101-136 (138)
170 PRK14990 anaerobic dimethyl su 53.7 32 0.0007 38.7 6.9 54 319-372 227-287 (814)
171 cd05013 SIS_RpiR RpiR-like pro 53.5 40 0.00086 27.9 5.9 56 320-375 57-113 (139)
172 PRK12775 putative trifunctiona 53.5 11 0.00025 43.5 3.3 13 299-311 839-851 (1006)
173 PRK13532 nitrate reductase cat 53.5 25 0.00054 39.7 6.0 54 319-372 202-259 (830)
174 TIGR02300 FYDLN_acid conserved 53.4 9.7 0.00021 33.4 2.1 15 297-311 25-39 (129)
175 PF00301 Rubredoxin: Rubredoxi 52.9 12 0.00025 27.2 2.1 13 231-243 1-13 (47)
176 cd00730 rubredoxin Rubredoxin; 52.6 17 0.00037 26.6 3.0 12 232-243 2-13 (50)
177 PRK14715 DNA polymerase II lar 52.6 11 0.00023 44.6 2.8 27 299-325 1558-1591(1627)
178 PLN02980 2-oxoglutarate decarb 52.2 30 0.00064 42.4 6.7 63 320-384 595-659 (1655)
179 PRK08493 NADH dehydrogenase su 51.8 40 0.00088 38.3 7.2 47 317-363 364-413 (819)
180 TIGR00441 gmhA phosphoheptose 51.7 60 0.0013 28.6 7.0 52 321-372 77-129 (154)
181 COG2331 Uncharacterized protei 51.6 5.9 0.00013 31.7 0.5 29 298-336 33-61 (82)
182 PRK11302 DNA-binding transcrip 50.9 37 0.0008 32.6 6.0 55 319-373 171-225 (284)
183 TIGR01706 NAPA periplasmic nit 50.8 28 0.0006 39.5 5.8 53 319-372 202-259 (830)
184 cd05005 SIS_PHI Hexulose-6-pho 49.8 30 0.00066 31.1 4.9 53 321-373 73-126 (179)
185 PF05191 ADK_lid: Adenylate ki 49.7 14 0.0003 25.2 2.0 12 231-242 1-12 (36)
186 COG1737 RpiR Transcriptional r 49.5 36 0.00077 33.3 5.7 57 317-373 171-228 (281)
187 PF10083 DUF2321: Uncharacteri 49.3 6.3 0.00014 35.7 0.3 25 297-322 66-93 (158)
188 cd02761 MopB_FmdB-FwdB The Mop 49.3 32 0.0007 34.9 5.6 51 322-372 130-190 (415)
189 PRK00945 acetyl-CoA decarbonyl 48.9 42 0.00092 30.8 5.7 24 111-134 23-46 (171)
190 smart00659 RPOLCX RNA polymera 48.8 14 0.0003 26.3 2.0 11 297-307 18-28 (44)
191 PF09151 DUF1936: Domain of un 48.7 6.5 0.00014 26.1 0.2 12 300-311 3-15 (36)
192 cd02068 radical_SAM_B12_BD B12 48.2 87 0.0019 26.4 7.3 65 322-386 38-110 (127)
193 TIGR01580 narG respiratory nit 48.0 32 0.00068 40.7 5.7 52 321-372 243-296 (1235)
194 PF02401 LYTB: LytB protein; 47.8 50 0.0011 32.8 6.4 48 312-360 198-245 (281)
195 PRK03824 hypA hydrogenase nick 47.3 13 0.00027 32.8 1.9 21 223-243 62-82 (135)
196 TIGR00100 hypA hydrogenase nic 46.9 12 0.00025 32.0 1.6 20 223-242 62-81 (115)
197 PF01380 SIS: SIS domain SIS d 46.8 20 0.00044 29.7 3.1 54 319-372 49-103 (131)
198 cd04795 SIS SIS domain. SIS (S 46.8 42 0.00091 25.7 4.7 39 319-357 43-81 (87)
199 COG1832 Predicted CoA-binding 46.0 1.5E+02 0.0031 26.6 8.3 69 316-384 8-91 (140)
200 PF00205 TPP_enzyme_M: Thiamin 45.4 11 0.00025 32.2 1.4 25 112-136 1-25 (137)
201 TIGR00216 ispH_lytB (E)-4-hydr 45.3 54 0.0012 32.5 6.2 46 312-360 197-244 (280)
202 PRK02947 hypothetical protein; 44.4 60 0.0013 31.2 6.3 53 320-372 103-167 (246)
203 PF01155 HypA: Hydrogenase exp 44.4 11 0.00025 31.9 1.2 21 223-243 62-82 (113)
204 PRK09130 NADH dehydrogenase su 44.3 70 0.0015 35.6 7.5 45 318-362 359-406 (687)
205 PRK08166 NADH dehydrogenase su 43.8 26 0.00057 39.7 4.2 41 319-359 367-409 (847)
206 PRK15482 transcriptional regul 43.5 51 0.0011 31.9 5.8 57 319-375 178-235 (285)
207 PRK00448 polC DNA polymerase I 43.4 30 0.00065 41.7 4.7 12 300-311 935-946 (1437)
208 PRK08197 threonine synthase; V 43.4 13 0.00028 38.2 1.6 14 230-243 6-19 (394)
209 COG1592 Rubrerythrin [Energy p 43.3 16 0.00035 33.4 2.0 11 231-241 134-144 (166)
210 TIGR00853 pts-lac PTS system, 43.3 11 0.00024 31.0 0.8 16 121-136 2-17 (95)
211 COG1439 Predicted nucleic acid 43.1 15 0.00032 34.1 1.7 11 232-242 140-150 (177)
212 PF10571 UPF0547: Uncharacteri 42.8 16 0.00035 23.1 1.4 9 299-307 15-23 (26)
213 PF13240 zinc_ribbon_2: zinc-r 42.7 13 0.00029 22.7 1.0 12 300-311 1-12 (23)
214 PRK00414 gmhA phosphoheptose i 42.7 79 0.0017 29.1 6.6 53 321-373 109-162 (192)
215 cd02764 MopB_PHLH The MopB_PHL 42.3 30 0.00066 36.7 4.2 53 320-372 193-255 (524)
216 COG0243 BisC Anaerobic dehydro 42.3 24 0.00051 39.4 3.6 51 320-370 196-251 (765)
217 TIGR00315 cdhB CO dehydrogenas 41.0 1.1E+02 0.0025 27.7 7.2 24 111-134 16-39 (162)
218 COG1996 RPC10 DNA-directed RNA 40.9 10 0.00022 27.8 0.3 11 231-241 6-16 (49)
219 TIGR00274 N-acetylmuramic acid 40.7 53 0.0011 32.6 5.4 53 321-373 124-177 (291)
220 PF13380 CoA_binding_2: CoA bi 40.6 1.4E+02 0.003 25.2 7.2 58 327-384 3-73 (116)
221 TIGR03129 one_C_dehyd_B formyl 40.4 49 0.0011 33.5 5.3 51 322-372 136-196 (421)
222 PRK13938 phosphoheptose isomer 40.3 84 0.0018 29.3 6.4 53 320-372 110-163 (196)
223 PF12172 DUF35_N: Rubredoxin-l 40.1 16 0.00035 24.5 1.2 14 227-240 7-20 (37)
224 PRK11557 putative DNA-binding 39.9 80 0.0017 30.3 6.4 57 316-372 168-225 (278)
225 PRK05638 threonine synthase; V 39.9 16 0.00035 38.1 1.7 12 231-242 1-12 (442)
226 COG1675 TFA1 Transcription ini 39.7 27 0.00058 32.3 2.9 13 299-311 133-145 (176)
227 cd05007 SIS_Etherase N-acetylm 39.1 55 0.0012 31.7 5.1 53 321-373 116-169 (257)
228 cd05017 SIS_PGI_PMI_1 The memb 38.6 54 0.0012 27.4 4.5 38 320-357 40-77 (119)
229 PRK12360 4-hydroxy-3-methylbut 38.6 73 0.0016 31.6 5.9 62 312-376 198-265 (281)
230 PF01475 FUR: Ferric uptake re 38.3 38 0.00083 28.4 3.5 53 185-243 40-92 (120)
231 COG1029 FwdB Formylmethanofura 37.9 46 0.00099 34.4 4.4 50 322-373 333-382 (429)
232 TIGR00375 conserved hypothetic 37.3 20 0.00044 37.0 1.9 20 299-319 260-281 (374)
233 PRK09590 celB cellobiose phosp 36.8 15 0.00033 30.8 0.8 14 123-136 2-15 (104)
234 PRK01045 ispH 4-hydroxy-3-meth 36.3 84 0.0018 31.4 6.0 61 312-375 199-265 (298)
235 PRK11382 frlB fructoselysine-6 36.2 55 0.0012 32.9 4.8 56 321-376 90-146 (340)
236 PRK09401 reverse gyrase; Revie 36.2 38 0.00083 40.1 4.1 58 299-357 693-757 (1176)
237 COG2176 PolC DNA polymerase II 35.8 63 0.0014 38.2 5.5 22 110-131 716-737 (1444)
238 TIGR00315 cdhB CO dehydrogenas 35.7 36 0.00079 31.0 3.1 45 322-371 99-144 (162)
239 PRK11337 DNA-binding transcrip 35.6 99 0.0022 30.0 6.4 54 319-372 183-237 (292)
240 COG2051 RPS27A Ribosomal prote 35.5 20 0.00042 28.0 1.1 17 224-240 12-28 (67)
241 PRK00762 hypA hydrogenase nick 35.0 22 0.00048 30.8 1.5 19 223-242 62-80 (124)
242 COG3142 CutC Uncharacterized p 34.8 40 0.00086 32.6 3.3 31 107-137 153-184 (241)
243 PF02302 PTS_IIB: PTS system, 34.8 18 0.00038 28.5 0.8 14 124-137 1-14 (90)
244 TIGR00393 kpsF KpsF/GutQ famil 34.7 1E+02 0.0022 29.2 6.2 54 320-373 44-98 (268)
245 PRK10892 D-arabinose 5-phospha 34.3 79 0.0017 31.2 5.5 54 321-374 92-146 (326)
246 COG3809 Uncharacterized protei 34.2 21 0.00045 28.8 1.1 20 298-317 21-40 (88)
247 PLN02569 threonine synthase 33.9 21 0.00046 38.0 1.4 12 231-242 49-60 (484)
248 PF03604 DNA_RNApol_7kD: DNA d 33.7 38 0.00083 22.5 2.1 10 298-307 17-26 (32)
249 PF09986 DUF2225: Uncharacteri 33.5 19 0.00042 34.0 1.0 14 231-244 5-18 (214)
250 PRK08329 threonine synthase; V 33.5 21 0.00046 36.0 1.3 12 232-243 2-13 (347)
251 PF02233 PNTB: NAD(P) transhyd 33.1 40 0.00088 35.7 3.3 72 313-385 372-462 (463)
252 cd02771 MopB_NDH-1_NuoG2-N7 Mo 32.9 54 0.0012 34.1 4.3 31 319-349 141-174 (472)
253 PRK13936 phosphoheptose isomer 32.9 97 0.0021 28.6 5.5 54 321-374 109-166 (197)
254 COG3357 Predicted transcriptio 32.8 19 0.00041 29.8 0.7 12 231-242 58-69 (97)
255 COG5349 Uncharacterized protei 32.8 27 0.00059 30.4 1.6 13 299-311 22-40 (126)
256 PF05728 UPF0227: Uncharacteri 32.6 70 0.0015 29.6 4.5 46 312-360 44-91 (187)
257 PRK12570 N-acetylmuramic acid- 32.2 88 0.0019 31.1 5.4 52 321-372 125-177 (296)
258 cd05564 PTS_IIB_chitobiose_lic 32.0 22 0.00048 29.1 1.0 13 124-136 1-13 (96)
259 TIGR02026 BchE magnesium-proto 31.8 1E+02 0.0022 32.7 6.2 64 323-386 63-135 (497)
260 PRK09444 pntB pyridine nucleot 31.8 62 0.0013 34.3 4.4 71 314-385 372-461 (462)
261 TIGR01405 polC_Gram_pos DNA po 31.6 59 0.0013 38.7 4.6 12 300-311 710-721 (1213)
262 COG1440 CelA Phosphotransferas 31.3 27 0.00059 29.4 1.4 13 124-136 3-15 (102)
263 PF04216 FdhE: Protein involve 31.1 29 0.00062 34.2 1.7 24 219-242 179-208 (290)
264 COG4821 Uncharacterized protei 30.8 83 0.0018 30.1 4.6 38 320-357 101-138 (243)
265 PF03447 NAD_binding_3: Homose 30.8 1E+02 0.0022 25.5 4.9 35 323-360 59-93 (117)
266 PRK04940 hypothetical protein; 30.7 97 0.0021 28.7 5.1 35 325-362 60-94 (180)
267 PF09889 DUF2116: Uncharacteri 30.2 55 0.0012 24.9 2.7 13 299-311 4-16 (59)
268 PRK00945 acetyl-CoA decarbonyl 30.1 56 0.0012 30.1 3.3 23 111-133 51-73 (171)
269 PRK11788 tetratricopeptide rep 29.8 29 0.00064 34.3 1.6 9 298-306 368-376 (389)
270 PF01396 zf-C4_Topoisom: Topoi 29.4 23 0.00051 24.4 0.6 10 300-309 3-12 (39)
271 PRK06965 acetolactate synthase 29.4 58 0.0013 35.2 3.9 27 108-134 207-233 (587)
272 PRK10886 DnaA initiator-associ 29.4 1.1E+02 0.0023 28.6 5.2 53 320-372 106-162 (196)
273 TIGR02164 torA trimethylamine- 29.3 84 0.0018 35.5 5.3 50 321-370 208-272 (822)
274 COG4306 Uncharacterized protei 29.2 11 0.00023 33.1 -1.4 15 296-311 65-80 (160)
275 PRK10499 PTS system N,N'-diace 29.2 28 0.0006 29.2 1.1 15 123-137 4-18 (106)
276 PF04413 Glycos_transf_N: 3-De 28.8 89 0.0019 28.7 4.5 43 313-360 86-128 (186)
277 CHL00099 ilvB acetohydroxyacid 28.7 66 0.0014 34.8 4.2 28 107-134 202-229 (585)
278 PF14169 YdjO: Cold-inducible 28.6 31 0.00067 26.3 1.2 15 297-311 38-52 (59)
279 PRK07524 hypothetical protein; 28.6 55 0.0012 34.8 3.5 28 107-134 186-213 (535)
280 PRK13371 4-hydroxy-3-methylbut 28.5 1.3E+02 0.0028 31.3 6.0 45 312-359 276-323 (387)
281 TIGR02720 pyruv_oxi_spxB pyruv 28.4 67 0.0014 34.7 4.1 39 107-145 185-233 (575)
282 PRK14717 putative glycine/sarc 28.1 79 0.0017 26.7 3.5 36 109-145 6-50 (107)
283 PRK14991 tetrathionate reducta 28.1 1E+02 0.0022 36.0 5.8 52 320-371 282-343 (1031)
284 PRK07418 acetolactate synthase 28.1 61 0.0013 35.3 3.8 28 107-134 209-236 (616)
285 PRK14101 bifunctional glucokin 27.9 1.4E+02 0.0031 32.6 6.6 56 319-374 511-566 (638)
286 TIGR02418 acolac_catab acetola 27.6 76 0.0016 33.8 4.4 29 107-135 180-208 (539)
287 PF07191 zinc-ribbons_6: zinc- 27.5 35 0.00075 26.9 1.3 10 299-308 31-40 (70)
288 PF04606 Ogr_Delta: Ogr/Delta- 27.3 26 0.00056 25.0 0.5 11 300-310 1-11 (47)
289 PRK08270 anaerobic ribonucleos 27.3 92 0.002 34.6 5.0 9 299-307 640-648 (656)
290 PF06906 DUF1272: Protein of u 27.3 31 0.00066 26.1 0.9 12 299-310 42-53 (57)
291 PRK15102 trimethylamine N-oxid 27.2 94 0.002 35.2 5.2 46 321-366 211-270 (825)
292 PRK05441 murQ N-acetylmuramic 27.1 1.3E+02 0.0027 30.0 5.5 54 321-374 129-183 (299)
293 PRK06154 hypothetical protein; 27.1 76 0.0017 34.2 4.3 30 107-136 199-228 (565)
294 cd03361 TOPRIM_TopoIA_RevGyr T 26.9 90 0.002 28.3 4.1 33 297-329 90-124 (170)
295 PRK08273 thiamine pyrophosphat 26.9 65 0.0014 34.9 3.7 28 107-134 193-220 (597)
296 PRK11543 gutQ D-arabinose 5-ph 26.7 1E+02 0.0022 30.2 4.8 54 321-374 87-141 (321)
297 PRK09259 putative oxalyl-CoA d 26.6 75 0.0016 34.2 4.1 28 107-134 198-225 (569)
298 cd05005 SIS_PHI Hexulose-6-pho 26.5 3.8E+02 0.0081 23.9 8.2 47 312-358 21-67 (179)
299 TIGR01054 rgy reverse gyrase. 26.5 64 0.0014 38.2 3.8 58 299-357 693-757 (1171)
300 cd07153 Fur_like Ferric uptake 26.3 79 0.0017 26.1 3.4 52 184-243 32-85 (116)
301 PF08274 PhnA_Zn_Ribbon: PhnA 26.2 28 0.00062 22.8 0.5 10 298-307 2-11 (30)
302 PRK07586 hypothetical protein; 26.1 79 0.0017 33.4 4.1 29 107-135 182-210 (514)
303 PRK05452 anaerobic nitric oxid 25.9 70 0.0015 33.9 3.7 21 223-243 417-437 (479)
304 COG1545 Predicted nucleic-acid 25.9 46 0.001 29.4 1.9 15 227-241 25-39 (140)
305 PF11071 DUF2872: Protein of u 25.8 1.3E+02 0.0029 26.6 4.7 67 316-382 65-136 (141)
306 cd05013 SIS_RpiR RpiR-like pro 25.6 1.9E+02 0.0041 23.7 5.7 46 313-358 2-47 (139)
307 PF02150 RNA_POL_M_15KD: RNA p 25.5 24 0.00052 23.8 0.1 12 300-311 3-14 (35)
308 COG1867 TRM1 N2,N2-dimethylgua 25.4 98 0.0021 32.0 4.4 45 334-384 331-375 (380)
309 PF09237 GAGA: GAGA factor; I 25.3 28 0.0006 25.9 0.3 17 295-311 21-37 (54)
310 TIGR01504 glyox_carbo_lig glyo 24.9 76 0.0016 34.4 3.8 28 108-135 188-215 (588)
311 PF10087 DUF2325: Uncharacteri 24.9 1.9E+02 0.0041 23.3 5.4 40 317-357 42-82 (97)
312 TIGR03127 RuMP_HxlB 6-phospho 24.9 3.8E+02 0.0083 23.7 7.9 47 312-358 18-64 (179)
313 PRK08617 acetolactate synthase 24.8 86 0.0019 33.5 4.2 28 107-134 186-213 (552)
314 PRK12454 carbamate kinase-like 24.7 75 0.0016 32.0 3.4 44 98-147 161-204 (313)
315 KOG3954 Electron transfer flav 24.7 87 0.0019 31.1 3.7 58 325-387 276-334 (336)
316 PRK07789 acetolactate synthase 24.7 83 0.0018 34.2 4.1 29 107-135 216-244 (612)
317 PRK07979 acetolactate synthase 24.7 80 0.0017 34.0 3.9 29 108-136 192-220 (574)
318 TIGR00746 arcC carbamate kinas 24.7 70 0.0015 32.1 3.2 45 97-147 157-201 (310)
319 COG3091 SprT Zn-dependent meta 24.6 18 0.00039 32.7 -0.9 52 190-242 70-127 (156)
320 PRK09107 acetolactate synthase 24.4 84 0.0018 34.1 4.0 28 107-134 197-224 (595)
321 PRK00087 4-hydroxy-3-methylbut 24.3 1.5E+02 0.0032 32.7 5.9 61 312-375 195-261 (647)
322 PRK06725 acetolactate synthase 24.2 88 0.0019 33.8 4.1 30 107-136 199-228 (570)
323 TIGR03457 sulphoacet_xsc sulfo 24.1 82 0.0018 33.9 3.9 29 107-135 181-209 (579)
324 PRK08271 anaerobic ribonucleos 23.7 95 0.0021 34.3 4.2 8 299-306 581-588 (623)
325 PRK07282 acetolactate synthase 23.7 86 0.0019 33.7 3.9 29 107-135 195-223 (566)
326 PRK10310 PTS system galactitol 23.6 36 0.00079 27.8 0.8 14 124-137 4-17 (94)
327 PRK12352 putative carbamate ki 23.6 74 0.0016 32.1 3.1 44 98-147 162-205 (316)
328 PRK07064 hypothetical protein; 23.6 90 0.002 33.2 4.0 39 107-145 188-235 (544)
329 PRK12474 hypothetical protein; 23.4 89 0.0019 33.2 3.9 57 317-386 260-319 (518)
330 PRK13264 3-hydroxyanthranilate 23.4 44 0.00095 31.0 1.4 15 296-310 155-169 (177)
331 PRK11269 glyoxylate carboligas 23.2 1E+02 0.0022 33.4 4.3 28 107-134 188-215 (591)
332 PRK14715 DNA polymerase II lar 23.2 81 0.0018 37.7 3.6 27 299-325 687-723 (1627)
333 TIGR00354 polC DNA polymerase, 23.1 84 0.0018 36.3 3.7 27 299-325 638-674 (1095)
334 PF14419 SPOUT_MTase_2: AF2226 22.8 89 0.0019 28.6 3.1 29 109-141 107-135 (173)
335 PRK05978 hypothetical protein; 22.8 47 0.001 29.9 1.4 14 298-311 52-65 (148)
336 PRK08979 acetolactate synthase 22.7 90 0.002 33.6 3.8 27 108-134 192-218 (572)
337 PRK07092 benzoylformate decarb 22.6 1E+02 0.0022 32.8 4.2 28 107-134 191-218 (530)
338 PF14803 Nudix_N_2: Nudix N-te 22.5 36 0.00078 22.9 0.5 10 300-309 2-11 (34)
339 PRK09462 fur ferric uptake reg 22.5 1.3E+02 0.0027 26.4 4.1 54 184-243 49-102 (148)
340 PRK06112 acetolactate synthase 22.3 89 0.0019 33.6 3.7 28 107-134 198-225 (578)
341 TIGR00595 priA primosomal prot 22.3 48 0.001 35.4 1.7 13 297-309 239-251 (505)
342 PF09297 zf-NADH-PPase: NADH p 22.3 29 0.00063 22.6 -0.0 13 299-311 4-16 (32)
343 PRK08327 acetolactate synthase 22.2 1E+02 0.0023 33.1 4.2 29 107-135 205-233 (569)
344 PLN02470 acetolactate synthase 22.2 89 0.0019 33.8 3.7 28 107-134 200-227 (585)
345 COG1066 Sms Predicted ATP-depe 22.1 55 0.0012 34.4 1.9 12 231-242 7-18 (456)
346 PF11290 DUF3090: Protein of u 22.0 46 0.001 30.6 1.2 14 298-311 154-167 (171)
347 PRK08527 acetolactate synthase 22.0 95 0.0021 33.3 3.8 29 108-136 189-217 (563)
348 PLN02821 1-hydroxy-2-methyl-2- 21.9 1.9E+02 0.0041 30.8 5.8 45 312-359 350-397 (460)
349 PRK08392 hypothetical protein; 21.8 1.8E+02 0.0038 27.1 5.2 50 312-363 137-186 (215)
350 cd02756 MopB_Arsenite-Ox Arsen 21.7 1.5E+02 0.0033 33.0 5.3 51 318-368 218-288 (676)
351 PRK08322 acetolactate synthase 21.6 1.1E+02 0.0024 32.5 4.3 28 107-134 181-208 (547)
352 COG0375 HybF Zn finger protein 21.5 59 0.0013 28.1 1.7 12 231-242 70-81 (115)
353 PRK08978 acetolactate synthase 21.5 1.1E+02 0.0023 32.7 4.1 28 107-134 181-208 (548)
354 COG1933 Archaeal DNA polymeras 21.4 34 0.00074 33.2 0.3 11 297-307 182-192 (253)
355 PRK06456 acetolactate synthase 21.4 1.1E+02 0.0024 32.7 4.3 28 107-134 192-219 (572)
356 TIGR03646 YtoQ_fam YtoQ family 21.3 1.8E+02 0.004 25.9 4.7 46 316-361 68-114 (144)
357 PRK14873 primosome assembly pr 21.3 47 0.001 36.9 1.3 16 226-241 378-393 (665)
358 PF01286 XPA_N: XPA protein N- 21.2 77 0.0017 21.5 1.9 15 291-305 17-31 (34)
359 PRK12474 hypothetical protein; 21.2 1E+02 0.0022 32.7 3.8 28 107-134 186-213 (518)
360 PF00070 Pyr_redox: Pyridine n 21.2 2.5E+02 0.0055 21.4 5.2 54 327-388 2-55 (80)
361 TIGR00173 menD 2-succinyl-5-en 21.0 1.1E+02 0.0023 31.8 3.9 40 107-146 196-246 (432)
362 PRK04023 DNA polymerase II lar 20.8 97 0.0021 36.0 3.6 27 299-325 664-698 (1121)
363 KOG2593 Transcription initiati 20.5 86 0.0019 32.9 2.9 13 299-311 154-166 (436)
364 PRK07525 sulfoacetaldehyde ace 20.4 1.1E+02 0.0024 33.1 3.9 28 107-134 185-212 (588)
365 COG4469 CoiA Competence protei 20.3 1E+02 0.0022 31.4 3.3 53 300-353 27-84 (342)
366 PRK08199 thiamine pyrophosphat 20.3 1.2E+02 0.0026 32.5 4.2 28 107-134 189-216 (557)
367 TIGR00118 acolac_lg acetolacta 20.3 1.1E+02 0.0023 32.8 3.8 27 108-134 187-213 (558)
368 TIGR03254 oxalate_oxc oxalyl-C 20.2 1E+02 0.0022 33.1 3.5 28 107-134 191-218 (554)
369 PRK06457 pyruvate dehydrogenas 20.2 1.2E+02 0.0026 32.4 4.2 25 110-134 183-207 (549)
370 TIGR03847 conserved hypothetic 20.2 54 0.0012 30.3 1.2 14 298-311 156-169 (177)
371 cd04235 AAK_CK AAK_CK: Carbama 20.1 1.1E+02 0.0024 30.8 3.5 43 98-146 157-199 (308)
372 PRK09411 carbamate kinase; Rev 20.1 92 0.002 31.2 3.0 44 98-147 152-195 (297)
373 cd05567 PTS_IIB_mannitol PTS_I 20.1 56 0.0012 26.0 1.2 15 123-137 1-15 (87)
No 1
>KOG2683 consensus Sirtuin 4 and related class II sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=8e-70 Score=503.79 Aligned_cols=287 Identities=60% Similarity=1.005 Sum_probs=273.6
Q ss_pred CCCCCCcCCCChhhhcccCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEeCCCcCccCCCCCcCCCC-CCCc-CCCCCCCh
Q 016198 81 SSRHEDKAPASPKVLRDKKAVPDADPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPN-GAYS-SGFKPITH 158 (393)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~l~~~i~~ak~IVVlTGAGISasSGIPdFRs~~-Gl~~-~~~~p~~~ 158 (393)
+++|+.+.+ +.....++.+|+++|..++++.+|..+|..+++++|+|||||||+||||||||++ |+|. ..++|+.+
T Consensus 6 ~l~~~s~~p--~s~~~~~k~VP~~~pl~e~~ikkl~~li~~~~rllvlTGAGISTEsGIPDYRS~~VGlYars~~kPI~h 83 (305)
T KOG2683|consen 6 SLGNESKAP--PSFLMARKYVPHADPLCEEDIKKLYRLIGTSDRLLVLTGAGISTESGIPDYRSEDVGLYARSAHKPIQH 83 (305)
T ss_pred ccccCCCCC--chhhhhccccCCCCCCCHHHHHHHHHHHccCCceEEEecCcccccCCCCcccCCCccceeecCCCcchH
Confidence 688888877 7777788999999999999999999999999999999999999999999999999 9998 57899999
Q ss_pred HHHhhchhHHHHHHHHHhhhhhcccCCCCCHHHHHHHHHHhcCCccEEEEccCcchhhhcCCCc-eeeecccceeecCCC
Q 016198 159 QQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDC 237 (393)
Q Consensus 159 ~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~~H~~La~L~~~g~l~~ViTQNIDgLh~rAG~~~-ielHGs~~~~~C~~C 237 (393)
++|.++..-+++||+|.|.+|++|..++||++|++|++|++.|+++++||||||+||.+||++. .|+||+.+.+.|..|
T Consensus 84 qdf~rSs~~RqRYWaRnf~gWprFs~aqPn~~H~ALs~wE~~~r~~wliTQNVD~LH~kAGS~~~tElHG~~~~VkCl~C 163 (305)
T KOG2683|consen 84 QDFVRSSRCRQRYWARNFVGWPRFSAAQPNPAHYALSKWEKAGRFQWLITQNVDRLHTKAGSRMVTELHGSAYQVKCLSC 163 (305)
T ss_pred HHHhhhhHHHHHHHHHhhcCcchhhhcCCCchhHHHHHHhhcCceEEEeeccchhhhhhccccceeeeccceEEEEeccc
Confidence 9999999999999999999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred CcccchhhHHHHHHhhChhHHHHHhhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCcCCCCCCccCCh------
Q 016198 238 GFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPD------ 311 (393)
Q Consensus 238 ~~~~~~~~~~~~l~~~np~~~~~~~~l~~~~p~~~~~~g~~~~~d~d~~i~~~~~~~~~~iP~Cp~CGg~LrP~------ 311 (393)
++..++..++++|..+||.|.++...++ +++||||++|++++ ++.|.||.|++|||.|||+
T Consensus 164 ~y~~~R~~~Qdrl~~~NP~fke~~~~~~------------~~~pDgDv~lpl~~-e~gF~IPeC~~CgG~lKpdV~fFGd 230 (305)
T KOG2683|consen 164 GYIEPRQTFQDRLKYLNPGFKEAIVSPG------------HQRPDGDVELPLEF-EEGFQIPECEKCGGLLKPDVTFFGD 230 (305)
T ss_pred CcccchHHHHHHHHhcCcchhhhccCcc------------ccCCCCCeecchhh-hhcccCCcccccCCccCCceEEecC
Confidence 9999999999999999999998864432 37899999999997 7899999999999999999
Q ss_pred ----HHHHHHHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCCcccEEEECcHHHHHHHH
Q 016198 312 ----DRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRV 382 (393)
Q Consensus 312 ----~~~~~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~~d~~~vL~~L 382 (393)
++++.+++.+++||-+||+||||+|++.++++.+|+..+.++.+||.++|+.|+.++++|..+|++||+++
T Consensus 231 nvn~dkv~~~~~~v~e~dg~LvlGsSL~v~Sg~r~i~~a~~~k~pi~IvNIGpTRaD~~a~lKl~~r~gdvl~~~ 305 (305)
T KOG2683|consen 231 NVNKDKVTFCMEKVKECDGFLVLGSSLMVLSGFRFIRHAHEKKKPIAIVNIGPTRADDMATLKLNYRIGEVLKEM 305 (305)
T ss_pred CCChHHHHHHHHHHhccCceEEechhHHHHHHHHHHHHHHhhcCcEEEEecCCcchhheeeeeecchHhhhhhcC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999864
No 2
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=1.2e-60 Score=460.62 Aligned_cols=249 Identities=59% Similarity=0.968 Sum_probs=218.8
Q ss_pred HHHHHHcCCcEEEEeCCCcCccCCCCCcCCCCCCCcCCCCCCChHHHhhchhHHHHHHHHHhhhhhcccCCCCCHHHHHH
Q 016198 115 LYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFAL 194 (393)
Q Consensus 115 l~~~i~~ak~IVVlTGAGISasSGIPdFRs~~Gl~~~~~~p~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~~H~~L 194 (393)
|+++|++|++|||+|||||||+||||||||++|+|+..+.+++++.|..+|..+|.||.+.+..+..+.+++||.+|++|
T Consensus 1 ~~~~l~~sk~ivvlTGAGiSt~SGIPdFR~~~Glw~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~~~~~~~~Pn~~H~~l 80 (260)
T cd01409 1 LQDFVARSRRLLVLTGAGISTESGIPDYRSEGGLYSRTFRPMTHQEFMRSPAARQRYWARSFVGWPRFSAAQPNAAHRAL 80 (260)
T ss_pred ChHHHhcCCCEEEEeCceeehhhCCCCCCCcCCcccCCCCCCCHHHHHhCcHHHHHHHHHHHhhhhhhccCCCCHHHHHH
Confidence 46789999999999999999999999999999999864778899999999998899998777666667789999999999
Q ss_pred HHHHhcCCccEEEEccCcchhhhcCCCc-eeeecccceeecCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCCCCCCC
Q 016198 195 ASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDR 273 (393)
Q Consensus 195 a~L~~~g~l~~ViTQNIDgLh~rAG~~~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~~~p~~~~ 273 (393)
++|+++|++.+||||||||||++||+++ +|+|||+++++|..|++.++.+.+.+.+...+|.|.+...
T Consensus 81 a~L~~~g~~~~viTQNIDgLh~~aG~~~vielHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~----------- 149 (260)
T cd01409 81 AALEAAGRLHGLITQNVDGLHTKAGSRNVVELHGSLHRVVCLSCGFRTPRAELQDRLEALNPGFAEQAA----------- 149 (260)
T ss_pred HHHHHcCCCeeEEeeccchhHHHcCCCCEEEEeeecCEEEeCCCcCccCHHHHHHHHhhcCcchhhhhc-----------
Confidence 9999999999999999999999999988 9999999999999999999988888888777777754321
Q ss_pred CcCcccCCCCCcccccccccccCCCCcCCCCCCccCCh----------HHHHHHHHHHhhCCeEEEeccCcchhhHHHHH
Q 016198 274 SFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPD----------DRADKAMEAAKECDAFLVLGSSLMTMSAYRLV 343 (393)
Q Consensus 274 ~~g~~~~~d~d~~i~~~~~~~~~~iP~Cp~CGg~LrP~----------~~~~~a~~~~~~aDllLVvGTSl~V~p~~~lv 343 (393)
...|+++..++.+. .....+|+||.|||.|||+ +.++++.+++++||++|||||||+|+|++.|+
T Consensus 150 ----~~~~~~~~~~~~~~-~~~~~~p~C~~Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~ 224 (260)
T cd01409 150 ----GQAPDGDVDLEDEQ-VAGFRVPECERCGGVLKPDVVFFGENVPRDRVVTAAARLAEADALLVLGSSLMVYSGYRFV 224 (260)
T ss_pred ----ccCCCcccccchhh-cccCCCCCCCCCCCEECCCEEECCCCCCHHHHHHHHHHHhcCCEEEEeCcCceecchhhHH
Confidence 13345555443321 1233589999999999999 46889999999999999999999999999999
Q ss_pred HHHHhCCCeEEEECCCCCCCCCcccEEEECcHHHHH
Q 016198 344 RAAHEAGSTIAIVNVGETRADDLTTLKISARLGEIL 379 (393)
Q Consensus 344 ~~a~~~ga~li~IN~~~t~~d~~~~l~I~~d~~~vL 379 (393)
..+.++|+++|+||+++|+.|..++++|+++++++|
T Consensus 225 ~~a~~~g~~viiIN~~~t~~d~~a~~~i~~~~~~~l 260 (260)
T cd01409 225 LAAAEAGLPIAIVNIGPTRADHLATLKVDARCGEVL 260 (260)
T ss_pred HHHHHCCCcEEEEcCCCCCCCccccEEEeCChhhhC
Confidence 999999999999999999999999999999999986
No 3
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=6.3e-59 Score=454.21 Aligned_cols=264 Identities=46% Similarity=0.755 Sum_probs=228.4
Q ss_pred HHHHHHHHHHHHcCCcEEEEeCCCcCccCCCCCcCCCCCCCcCCCCCCChHHHhhchhHHHHHHHHHhhhhhcccCCCCC
Q 016198 109 IEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSRARRRYWARSYAGWRRFMAAQPN 188 (393)
Q Consensus 109 ~~~l~~l~~~i~~ak~IVVlTGAGISasSGIPdFRs~~Gl~~~~~~p~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn 188 (393)
..+++.|+++|+++++|||+|||||||+||||||||++|+|.+ +.+++++.|..++..++.||.+.+..|..+.+++||
T Consensus 6 ~~~l~~l~~~i~~~~~ivvlTGAGiS~~SGIPdFR~~~G~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pn 84 (285)
T PRK05333 6 PAALDALQDFVERHPRLFVLTGAGISTDSGIPDYRDRNGQWKR-SPPITYQAFMGSDAARRRYWARSMVGWPVFGRAQPN 84 (285)
T ss_pred HHHHHHHHHHHHhCCcEEEEeCCccccccCCCcccCCCCcccc-CCcccHHHHhcCchhhHHHHHHHHhhchhcccCCCC
Confidence 3578899999999999999999999999999999999999974 677888999999988899998776666667789999
Q ss_pred HHHHHHHHHHhcCCccEEEEccCcchhhhcCCCc-eeeecccceeecCCCCcccchhhHHHHHHhhChhHHHHHhhhcCC
Q 016198 189 PAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYG 267 (393)
Q Consensus 189 ~~H~~La~L~~~g~l~~ViTQNIDgLh~rAG~~~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~~ 267 (393)
++|++|++|+++|++++||||||||||++||.+. +|+||++..++|.+|++.++.+.+.+.+...+|.|.+...
T Consensus 85 ~~H~aLa~L~~~g~~~~viTQNIDgLh~rAG~~~ViElHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~----- 159 (285)
T PRK05333 85 AAHHALARLGAAGRIERLVTQNVDGLHQRAGSRDVIELHGRLDGVRCMGCGARHPRAEIQHVLEAANPEWLALEA----- 159 (285)
T ss_pred HHHHHHHHHHHcCCcccEEecccchhHHHcCCCCEEeecCCcCEEEECCCCCcCCHHHHHHHHhhcCcchhhhhc-----
Confidence 9999999999999999999999999999999888 9999999999999999999888777666655666554321
Q ss_pred CCCCCCCcCcccCCCCCcccccccccccCCCCcCCCCCCccCCh----------HHHHHHHHHHhhCCeEEEeccCcchh
Q 016198 268 SPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPD----------DRADKAMEAAKECDAFLVLGSSLMTM 337 (393)
Q Consensus 268 ~p~~~~~~g~~~~~d~d~~i~~~~~~~~~~iP~Cp~CGg~LrP~----------~~~~~a~~~~~~aDllLVvGTSl~V~ 337 (393)
.+.++++++++... .....+|+||.|||+|||+ +.++++.++++++|++||||||+.|+
T Consensus 160 ----------~~~~~~~~~~~~~~-~~~~~iP~C~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~~DlllvvGTSl~V~ 228 (285)
T PRK05333 160 ----------APAPDGDADLEWAA-FDHFRVPACPACGGILKPDVVFFGENVPRERVAAARAALDAADAVLVVGSSLMVY 228 (285)
T ss_pred ----------ccCCCccccccccc-cccCCCCCCCCCCCcccCCEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcCceec
Confidence 12234444332210 1223589999999999999 46888999999999999999999999
Q ss_pred hHHHHHHHHHhCCCeEEEECCCCCCCCCcccEEEECcHHHHHHHHHHhCCCC
Q 016198 338 SAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSLS 389 (393)
Q Consensus 338 p~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~~d~~~vL~~L~~~~~~~ 389 (393)
|++.+++.+.+.|+++|+||++++..++.+++.|.++++++|++|++.++++
T Consensus 229 p~~~~~~~a~~~g~~~i~IN~~~t~~~~~~~~~i~g~~~evL~~l~~~l~~~ 280 (285)
T PRK05333 229 SGYRFCVWAAQQGKPIAALNLGRTRADPLLTLKVEASCAQALAALVARLGLA 280 (285)
T ss_pred chhhhHHHHHHCCCeEEEECCCCCCCCcceeEEEeCCHHHHHHHHHHHhCCC
Confidence 9999999999899999999999999999999999999999999999988875
No 4
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=5.8e-57 Score=431.39 Aligned_cols=231 Identities=35% Similarity=0.618 Sum_probs=203.5
Q ss_pred HHHHHHHHcCCcEEEEeCCCcCccCCCCCcCCCCCCCcCCCCC-CChHHHhhchhHHHHHHHHHhhhhhcccCCCCCHHH
Q 016198 113 NQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP-ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAH 191 (393)
Q Consensus 113 ~~l~~~i~~ak~IVVlTGAGISasSGIPdFRs~~Gl~~~~~~p-~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~~H 191 (393)
++|+++|++|++|||+||||||++||||||||++|+|++.... .+...|..+|+.+|.||.+.+ ..+.+++||.+|
T Consensus 2 ~~l~~~l~~a~~ivv~tGAGiS~~SGIp~fR~~~gl~~~~~~~~~~~~~~~~~p~~~w~~~~~~~---~~~~~~~Pn~~H 78 (244)
T PRK14138 2 KEFLELLNESRLTVTLTGAGISTPSGIPDFRGPQGIYKKYPQNVFDIDFFYSHPEEFYRFAKEGI---FPMLEAKPNLAH 78 (244)
T ss_pred HHHHHHHHhCCCEEEEECcccchhhCCCCcCCCCCCccCCcccccCHHHHHhCHHHHHHHHHHhh---cccccCCCCHHH
Confidence 5789999999999999999999999999999999999752222 467788889988877776432 235589999999
Q ss_pred HHHHHHHhcCCccEEEEccCcchhhhcCCCc-eeeecccceeecCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCCCC
Q 016198 192 FALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPG 270 (393)
Q Consensus 192 ~~La~L~~~g~l~~ViTQNIDgLh~rAG~~~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~~~p~ 270 (393)
++|++|+++|++.+||||||||||++||.++ +|+||++.+++|.+|++.|+.+.+.+.+
T Consensus 79 ~ala~L~~~g~~~~viTQNIDgLh~~aG~~~VielHG~~~~~~C~~C~~~~~~~~~~~~~-------------------- 138 (244)
T PRK14138 79 VLLAKLEEKGLIEAVITQNIDRLHQKAGSKKVIELHGNVEEYYCVRCGKRYTVEDVIEKL-------------------- 138 (244)
T ss_pred HHHHHHHHcCCceEEEeecccChhhHcCCCeEEEccCCcCeeEECCCCCcccHHHHHHHH--------------------
Confidence 9999999999999999999999999999888 9999999999999999988765443211
Q ss_pred CCCCcCcccCCCCCcccccccccccCCCCcCCCCCCccCCh----------HHHHHHHHHHhhCCeEEEeccCcchhhHH
Q 016198 271 SDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPD----------DRADKAMEAAKECDAFLVLGSSLMTMSAY 340 (393)
Q Consensus 271 ~~~~~g~~~~~d~d~~i~~~~~~~~~~iP~Cp~CGg~LrP~----------~~~~~a~~~~~~aDllLVvGTSl~V~p~~ 340 (393)
....+|+||.|||+|||+ ..++++.+++++||++|||||||+|+|+.
T Consensus 139 -----------------------~~~~~p~Cp~Cgg~lrP~Vv~FgE~~p~~~~~~~~~~~~~aDl~lviGTSl~V~pa~ 195 (244)
T PRK14138 139 -----------------------EKSDVPRCDDCSGLIRPNIVFFGEALPQDALREAIRLSSKASLMIVMGSSLVVYPAA 195 (244)
T ss_pred -----------------------hcCCCCCCCCCCCeECCCEEECCCcCCHHHHHHHHHHHhcCCEEEEeCcCCeeecHh
Confidence 011479999999999999 45788999999999999999999999999
Q ss_pred HHHHHHHhCCCeEEEECCCCCCCCCcccEEEECcHHHHHHHHHHhCCCC
Q 016198 341 RLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSLS 389 (393)
Q Consensus 341 ~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~~d~~~vL~~L~~~~~~~ 389 (393)
+++..++++|+++++||+++|+.++.++++|+++++++|++|++.++++
T Consensus 196 ~l~~~~~~~g~~~i~iN~~~t~~d~~~~~~i~~~~~~~l~~l~~~~~~~ 244 (244)
T PRK14138 196 ELPLITVRSGGKLVIVNLGETPLDDIATLKYNMDVVEFANRVMSEGGIS 244 (244)
T ss_pred HHHHHHHHcCCeEEEEcCCCCCCCcceeEEEeCCHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999988764
No 5
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=100.00 E-value=1.3e-55 Score=421.55 Aligned_cols=230 Identities=39% Similarity=0.650 Sum_probs=199.9
Q ss_pred HHHHHHHHHcCCcEEEEeCCCcCccCCCCCcCCCCCCCcCCCCC---CChHHHhhchhHHHHHHHHHhhhhhcccCCCCC
Q 016198 112 INQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPN 188 (393)
Q Consensus 112 l~~l~~~i~~ak~IVVlTGAGISasSGIPdFRs~~Gl~~~~~~p---~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn 188 (393)
+++++++|++|++|||+|||||||+|||||||+.+|+|..+++| ++++.|.++|+.+|.|+.+.. .....++||
T Consensus 2 ~~~~~~~l~~a~~ivvltGAGiSa~sGIpdFR~~~Gl~~~~~~p~~l~s~~~f~~~p~~~~~f~~~~~---~~~~~a~Pn 78 (250)
T COG0846 2 LEEVAQALKEAKRIVVLTGAGISAESGIPDFRSKDGLWSDKYDPEDLASPSGFRRDPELVWDFYSERL---RLLYLAQPN 78 (250)
T ss_pred HHHHHHHHHhcCcEEEEeCCccccccCCCcccCCCCCCCCCCCHHHHhCHHHHhhCHHHHHHHHHHHH---HhhhcCCCC
Confidence 57899999999999999999999999999999999999856766 478889888886555543221 123458999
Q ss_pred HHHHHHHHHHhcCCccEEEEccCcchhhhcCCCc-eeeecccceeecCCCCcccchhhHHHHHHhhChhHHHHHhhhcCC
Q 016198 189 PAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYG 267 (393)
Q Consensus 189 ~~H~~La~L~~~g~l~~ViTQNIDgLh~rAG~~~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~~ 267 (393)
++|++|++|++.|++++||||||||||++||++. +||||++..++|.+|+..++.+.+...
T Consensus 79 ~~H~~la~le~~~~~~~iiTQNiD~Lhe~AGs~~Vi~lHGsl~~~~C~~C~~~~~~~~~~~~------------------ 140 (250)
T COG0846 79 KAHYALAELEDKGKLLRIITQNIDGLHERAGSKNVIELHGSLKRVRCSKCGNQYYDEDVIKF------------------ 140 (250)
T ss_pred HHHHHHHHHhhcCCceEEEecccchHHHHcCCCcEEEeccceeeeEeCCCcCccchhhhhhh------------------
Confidence 9999999999999999999999999999999999 999999999999999988764432100
Q ss_pred CCCCCCCcCcccCCCCCcccccccccccCCCCcCCCCCC-ccCCh----------HHHHHHHHHHhhCCeEEEeccCcch
Q 016198 268 SPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNG-VLKPD----------DRADKAMEAAKECDAFLVLGSSLMT 336 (393)
Q Consensus 268 ~p~~~~~~g~~~~~d~d~~i~~~~~~~~~~iP~Cp~CGg-~LrP~----------~~~~~a~~~~~~aDllLVvGTSl~V 336 (393)
.....+|+||+||+ .|||+ +.++.+.+.++++|++||||||+.|
T Consensus 141 -------------------------~~~~~~p~C~~Cg~~~lrP~VV~fGE~lp~~~~~~~~~~~~~~d~liviGTSl~V 195 (250)
T COG0846 141 -------------------------IEDGLIPRCPKCGGPVLRPDVVWFGEPLPASFLDEALEALKEADLLIVIGTSLKV 195 (250)
T ss_pred -------------------------cccCCCCcCccCCCccccCCEEEeCCCCCHHHHHHHHHHhccCCEEEEECcceEE
Confidence 00115899999999 99999 4578999999999999999999999
Q ss_pred hhHHHHHHHHHhCCCeEEEECCCCCCCCCcccEEEECcHHHHHHHHHHhCC
Q 016198 337 MSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGS 387 (393)
Q Consensus 337 ~p~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~~d~~~vL~~L~~~~~ 387 (393)
+|++.++..++++|+.+++||.+++++++.+++++.++++++++.|++.+.
T Consensus 196 ~Paa~~p~~~~~~g~~~i~iN~~~~~~~~~~d~~i~~~a~~~~~~l~~~~~ 246 (250)
T COG0846 196 YPAAGLPELAKRRGAKVIEINLEPTRLDPIADEVIRGDAGEVLPLLLEELL 246 (250)
T ss_pred cChhhhhHHHHhcCCEEEEECCCcccCcchhHHHHHhhHHHHHHHHHHHhh
Confidence 999998887889999999999999999999999999999999999988653
No 6
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=100.00 E-value=7.5e-55 Score=422.18 Aligned_cols=232 Identities=26% Similarity=0.465 Sum_probs=193.1
Q ss_pred HHHHHHHHHHHHcCCcEEEEeCCCcCccCCCCCcCCC-CCCCcCCCCC---CChHHHhhchhHHHHHHHHHhhhhhcccC
Q 016198 109 IEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSP-NGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMA 184 (393)
Q Consensus 109 ~~~l~~l~~~i~~ak~IVVlTGAGISasSGIPdFRs~-~Gl~~~~~~p---~~~~~f~~~~~~~~~~w~~~~~~~~~~~~ 184 (393)
..+++.++++|+++++|||+|||||||+||||||||+ +|+|++ +.| .++..|..+|...|.||.+. ....+
T Consensus 15 ~~~l~~l~~~l~~s~~ivvlTGAGiSteSGIPdFR~~~~Glw~~-~~~~~~~t~~~f~~~p~~~~~~~~~~----~~~~~ 89 (271)
T PTZ00409 15 SITLEDLADMIRKCKYVVALTGSGTSAESNIPSFRGPSSSIWSK-YDPKIYGTIWGFWKYPEKIWEVIRDI----SSDYE 89 (271)
T ss_pred cccHHHHHHHHHhCCcEEEEECCeechhhCCCcccCCCCccccC-CCHHHhccHHHHHHChHHHHHHHHHh----hhccc
Confidence 3468899999999999999999999999999999998 699974 555 35667888888666665421 12347
Q ss_pred CCCCHHHHHHHHHHhcCCccEEEEccCcchhhhcCCCc-eeeecccceeecCCCCcccchhhHHHHHHhhChhHHHHHhh
Q 016198 185 AQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIES 263 (393)
Q Consensus 185 a~Pn~~H~~La~L~~~g~l~~ViTQNIDgLh~rAG~~~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~ 263 (393)
++||++|++|++|++.|++.+||||||||||++||++. +|+||++..++|..|++.++.... +...++.
T Consensus 90 a~PN~~H~aLa~Le~~g~~~~vITQNIDgLh~rAGs~~V~ElHG~l~~~~C~~C~~~~~~~~~---~~~~~~~------- 159 (271)
T PTZ00409 90 IELNPGHVALSTLESLGYLKFVVTQNVDGLHEESGNTKVIPLHGSVFEARCCTCRKTIQLNKI---MLQKTSH------- 159 (271)
T ss_pred CCCCHHHHHHHHHHhcCCCcEEEeccccchHhHcCCCcEEEeccCcCcceeCCCCCCcccCHH---HHhhhhh-------
Confidence 89999999999999999999999999999999999988 999999999999999987653211 1000000
Q ss_pred hcCCCCCCCCCcCcccCCCCCcccccccccccCCCCcCCCCCCccCCh----------HHHHHHHHHHhhCCeEEEeccC
Q 016198 264 LDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPD----------DRADKAMEAAKECDAFLVLGSS 333 (393)
Q Consensus 264 l~~~~p~~~~~~g~~~~~d~d~~i~~~~~~~~~~iP~Cp~CGg~LrP~----------~~~~~a~~~~~~aDllLVvGTS 333 (393)
. ....+|+|+ |||+|||+ +.++++.+++++||++||||||
T Consensus 160 -----------------------~------~~~~~P~C~-Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTS 209 (271)
T PTZ00409 160 -----------------------F------MHQLPPECP-CGGIFKPNVILFGEVIPKSLLKQAEKEIDKCDLLLVVGTS 209 (271)
T ss_pred -----------------------h------ccCCCCCCC-CCCcccCcEEEeCCcCCHHHHHHHHHHHHcCCEEEEECCC
Confidence 0 011469999 99999999 4688999999999999999999
Q ss_pred cchhhHHHHHHHHHhCCCeEEEECCCCCCCCC-cccEEEECcHHHHHHHHHHhC
Q 016198 334 LMTMSAYRLVRAAHEAGSTIAIVNVGETRADD-LTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 334 l~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~-~~~l~I~~d~~~vL~~L~~~~ 386 (393)
|+|+|+++|+..++++|+++|+||+++|++++ .++++|.+++++++. +++.+
T Consensus 210 l~V~pa~~l~~~a~~~g~~vi~IN~~~t~~~~~~~d~~i~~~~~~~~~-~~~~~ 262 (271)
T PTZ00409 210 SSVSTATNLCYRAHRKKKKIVEVNISKTYITNRISDYHVRAKFSELAQ-ISDIL 262 (271)
T ss_pred CcccCHHHHHHHHHHcCCCEEEECCCCCCCCCccccEEEECcHHHHHH-HHHHh
Confidence 99999999999999999999999999999874 689999999999995 44543
No 7
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=1.9e-54 Score=413.38 Aligned_cols=225 Identities=39% Similarity=0.683 Sum_probs=198.0
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCcCccCCCCCcCCCCCCCcCCCCC---CChHHHhhchhHHHHHHHHHhhhhhcccCCCC
Q 016198 111 DINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQP 187 (393)
Q Consensus 111 ~l~~l~~~i~~ak~IVVlTGAGISasSGIPdFRs~~Gl~~~~~~p---~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~P 187 (393)
++++++++|++|++|||+||||||++|||||||+.+|+|.+ +.+ .+...|..+|+.+|.||.+... .+.+++|
T Consensus 2 ~l~~l~~~i~~~~~ivi~tGAGiS~~sGip~FR~~~gl~~~-~~~~~~~~~~~~~~~p~~~w~f~~~~~~---~~~~~~P 77 (242)
T PRK00481 2 RIEELAEILDKAKRIVVLTGAGISAESGIPDFRSANGLWEE-HRPEDVASPEGFARDPELVWKFYNERRR---QLLDAKP 77 (242)
T ss_pred hHHHHHHHHHhCCCEEEEeCCccccccCCCCccCCCcCccC-CCHHHhccHHHHhhCHHHHHHHHHHHHH---HhccCCC
Confidence 57899999999999999999999999999999999999974 444 3667788888877777654321 2448999
Q ss_pred CHHHHHHHHHHhcCCccEEEEccCcchhhhcCCCc-eeeecccceeecCCCCcccchhhHHHHHHhhChhHHHHHhhhcC
Q 016198 188 NPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDY 266 (393)
Q Consensus 188 n~~H~~La~L~~~g~l~~ViTQNIDgLh~rAG~~~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~ 266 (393)
|++|++|++|++.|++++||||||||||++||.+. +|+||++.+++|++|++.|+.+.+.
T Consensus 78 n~~H~~L~~L~~~~~~~~viTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~------------------- 138 (242)
T PRK00481 78 NAAHRALAELEKLGKLVTVITQNIDGLHERAGSKNVIELHGSLLRARCTKCGQTYDLDEYL------------------- 138 (242)
T ss_pred CHHHHHHHHHHhcCCCeEEEEeccchhHHHcCCCceeeccCCcCceeeCCCCCCcChhhhc-------------------
Confidence 99999999999999999999999999999999888 9999999999999999877543210
Q ss_pred CCCCCCCCcCcccCCCCCcccccccccccCCCCcCCCCCCccCCh----------HHHHHHHHHHhhCCeEEEeccCcch
Q 016198 267 GSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPD----------DRADKAMEAAKECDAFLVLGSSLMT 336 (393)
Q Consensus 267 ~~p~~~~~~g~~~~~d~d~~i~~~~~~~~~~iP~Cp~CGg~LrP~----------~~~~~a~~~~~~aDllLVvGTSl~V 336 (393)
...+|+||.|||.|||+ +.++++.++++++|++||||||+.|
T Consensus 139 ----------------------------~~~~p~C~~Cgg~lrP~Vv~fge~~~~~~~~~a~~~~~~~dl~lviGTsl~V 190 (242)
T PRK00481 139 ----------------------------KPEPPRCPKCGGILRPDVVLFGEMLPELAIDEAYEALEEADLFIVIGTSLVV 190 (242)
T ss_pred ----------------------------cCCCCCCCCCCCccCCCeEECCCCCCHHHHHHHHHHHhcCCEEEEECCCceE
Confidence 01368899999999999 4578899999999999999999999
Q ss_pred hhHHHHHHHHHhCCCeEEEECCCCCCCCCcccEEEECcHHHHHHHHHHhC
Q 016198 337 MSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 337 ~p~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~~d~~~vL~~L~~~~ 386 (393)
+|++++++.++++|+++|+||++++..+..+++.|.++++++|++|++.+
T Consensus 191 ~p~~~l~~~~~~~~~~~i~iN~~~~~~~~~~~~~i~~~~~~~l~~l~~~~ 240 (242)
T PRK00481 191 YPAAGLPYEAREHGAKTVEINLEPTPLDSLFDLVIHGKAGEVVPELVEEL 240 (242)
T ss_pred cCHhHHHHHHHHCCCeEEEECCCCCCCCCccCEEEECCHHHHHHHHHHHh
Confidence 99999999888889999999999999999999999999999999998865
No 8
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=100.00 E-value=1.6e-53 Score=402.40 Aligned_cols=208 Identities=44% Similarity=0.737 Sum_probs=181.8
Q ss_pred HHcCCcEEEEeCCCcCccCCCCCcCCCCCCCcCCCCC---CChHHHhhchhHHHHHHHHHhhhhhcccCCCCCHHHHHHH
Q 016198 119 FDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALA 195 (393)
Q Consensus 119 i~~ak~IVVlTGAGISasSGIPdFRs~~Gl~~~~~~p---~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~~H~~La 195 (393)
|++|++|||+||||||++|||||||+++|+|++ +.+ .+...|..+|..+|.||.+.+. .+.+++||++|++|+
T Consensus 1 l~~a~~ivv~tGAGiS~~sGIp~FR~~~glw~~-~~~~~~~~~~~f~~~p~~~w~~~~~~~~---~~~~a~Pn~~H~~La 76 (222)
T cd01413 1 LTKSRKTVVLTGAGISTESGIPDFRSPDGLWKK-YDPEEVASIDYFYRNPEEFWRFYKEIIL---GLLEAQPNKAHYFLA 76 (222)
T ss_pred CCCCCeEEEEECchhhhhhCCCCccCcCCCcCC-CCHHHhccHHHHhHCHHHHHHHHHHHhc---ccCCCCCCHHHHHHH
Confidence 467999999999999999999999999999974 544 3677788889888888865433 245899999999999
Q ss_pred HHHhcCCccEEEEccCcchhhhcCCCc-eeeecccceeecCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCCCCCCCC
Q 016198 196 SLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRS 274 (393)
Q Consensus 196 ~L~~~g~l~~ViTQNIDgLh~rAG~~~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~~~p~~~~~ 274 (393)
+|++.|++++||||||||||++||.+. +|+||++.+++|++|++.++.+.+. .+
T Consensus 77 ~L~~~~~~~~viTQNiDgLh~~AG~~~v~elHG~l~~~~C~~C~~~~~~~~~~-~~------------------------ 131 (222)
T cd01413 77 ELEKQGIIKAIITQNIDGLHQRAGSKNVIELHGTLQTAYCVNCGSKYDLEEVK-YA------------------------ 131 (222)
T ss_pred HHHhcCCCeEEEEeccchhhHHcCCCcEEEccCCcCcceECCCCCCcchhHHH-Hh------------------------
Confidence 999999999999999999999999887 9999999999999999887754320 00
Q ss_pred cCcccCCCCCcccccccccccCCCCcCCCCCCccCCh----------HHHHHHHHHHhhCCeEEEeccCcchhhHHHHHH
Q 016198 275 FGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPD----------DRADKAMEAAKECDAFLVLGSSLMTMSAYRLVR 344 (393)
Q Consensus 275 ~g~~~~~d~d~~i~~~~~~~~~~iP~Cp~CGg~LrP~----------~~~~~a~~~~~~aDllLVvGTSl~V~p~~~lv~ 344 (393)
....+|+||.|||.|||+ +.++++.+++++||++|||||||+|+|+++|+.
T Consensus 132 -------------------~~~~~p~C~~Cgg~lrP~Vv~fgE~lp~~~~~~a~~~~~~~Dl~lvvGTSl~V~p~~~l~~ 192 (222)
T cd01413 132 -------------------KKHEVPRCPKCGGIIRPDVVLFGEPLPQALLREAIEAAKEADLFIVLGSSLVVYPANLLPL 192 (222)
T ss_pred -------------------ccCCCCcCCCCCCccCCCEEECCCCCCHHHHHHHHHHHhcCCEEEEEccCCEeccHhHHHH
Confidence 012579999999999999 468899999999999999999999999999999
Q ss_pred HHHhCCCeEEEECCCCCCCCCcccEEEECc
Q 016198 345 AAHEAGSTIAIVNVGETRADDLTTLKISAR 374 (393)
Q Consensus 345 ~a~~~ga~li~IN~~~t~~d~~~~l~I~~d 374 (393)
.++++|+++|+||+++++.+..++++|+++
T Consensus 193 ~a~~~g~~~i~iN~~~~~~~~~~~~~i~~~ 222 (222)
T cd01413 193 IAKENGAKLVIVNADETPFDYIADLVIQDK 222 (222)
T ss_pred HHHHcCCeEEEEcCCCCCCCcceeEEEeCC
Confidence 999999999999999999999999999874
No 9
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=100.00 E-value=2.1e-53 Score=404.79 Aligned_cols=211 Identities=27% Similarity=0.432 Sum_probs=177.6
Q ss_pred CcEEEEeCCCcCccCCCCCcCCCC-CCCcCC-----CCC---CChHHHhhchhHHHHHHHHHhhhhhcccCCCCCHHHHH
Q 016198 123 AKLIVLTGAGISTECGIPDYRSPN-GAYSSG-----FKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFA 193 (393)
Q Consensus 123 k~IVVlTGAGISasSGIPdFRs~~-Gl~~~~-----~~p---~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~~H~~ 193 (393)
|+|||+|||||||+||||||||++ |+|... ..+ .+++.|.++|..+|.|+.. +. ..+++||.+|++
T Consensus 1 k~ivvlTGAGiS~~SGIPdfR~~~~G~w~~~~~~~~~~~~~~~~~~~f~~~p~~~~~~~~~-~~----~~~a~Pn~~H~~ 75 (235)
T cd01408 1 KKIVVLVGAGISTSAGIPDFRSPGTGLYANLARYNLPYPEAMFDISYFRKNPRPFYALAKE-LY----PGQFKPSVAHYF 75 (235)
T ss_pred CcEEEEeCCccccccCCCCcCCCCCCcchhhhhccCCCHHHhcCHHHHHHChHHHHHHHHH-Hh----cCcCCCCHHHHH
Confidence 579999999999999999999999 999752 122 3667788888755444332 11 148999999999
Q ss_pred HHHHHhcCCccEEEEccCcchhhhcCCC--c-eeeecccceeecCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCCCC
Q 016198 194 LASLEKAGRIDCMITQNVDRLHHRAGSN--P-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPG 270 (393)
Q Consensus 194 La~L~~~g~l~~ViTQNIDgLh~rAG~~--~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~~~p~ 270 (393)
|++|+++|++++||||||||||++||++ + +|+||++.+++|..|++.++.+.+...+
T Consensus 76 la~L~~~g~~~~viTQNiD~Lh~raG~~~~~V~elHG~l~~~~C~~C~~~~~~~~~~~~~-------------------- 135 (235)
T cd01408 76 IKLLEDKGLLLRNYTQNIDTLERVAGVPDDRIIEAHGSFATAHCIKCKHKYPGDWMREDI-------------------- 135 (235)
T ss_pred HHHHHhcCCceEEEEeccchHHHHcCCCccCEEEeCcCCCccccccCCCcCCHHHHHHHH--------------------
Confidence 9999999999999999999999999987 4 9999999999999999987754332111
Q ss_pred CCCCcCcccCCCCCcccccccccccCCCCcCCCCCCccCCh----------HHHHHHHHHHhhCCeEEEeccCcchhhHH
Q 016198 271 SDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPD----------DRADKAMEAAKECDAFLVLGSSLMTMSAY 340 (393)
Q Consensus 271 ~~~~~g~~~~~d~d~~i~~~~~~~~~~iP~Cp~CGg~LrP~----------~~~~~a~~~~~~aDllLVvGTSl~V~p~~ 340 (393)
....+|+||.|||.|||+ +.++++.+++++||++|||||||+|+|++
T Consensus 136 -----------------------~~~~~p~C~~Cgg~lrP~Vv~FGE~lp~~~~~~~~~~~~~aDlllvvGTSl~V~pa~ 192 (235)
T cd01408 136 -----------------------FNQEVPKCPRCGGLVKPDIVFFGESLPSRFFSHMEEDKEEADLLIVIGTSLKVAPFA 192 (235)
T ss_pred -----------------------hCCCCccCCCCCCCccCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCeeccHH
Confidence 011379999999999999 34567778899999999999999999999
Q ss_pred HHHHHHHhCCCeEEEECCCCCCCC--CcccEEEECcHHHHHHHH
Q 016198 341 RLVRAAHEAGSTIAIVNVGETRAD--DLTTLKISARLGEILPRV 382 (393)
Q Consensus 341 ~lv~~a~~~ga~li~IN~~~t~~d--~~~~l~I~~d~~~vL~~L 382 (393)
.|++.++ .|+++|+||++++..+ +.++++|+++|+++|++|
T Consensus 193 ~l~~~~~-~~~~~v~iN~~~~~~~~~~~~d~~~~~~~~~~l~~~ 235 (235)
T cd01408 193 SLPSRVP-SEVPRVLINREPVGHLGKRPFDVALLGDCDDGVREL 235 (235)
T ss_pred HHHHHHh-CCCcEEEEeCCCCCCCCCCCcCEEEeCCHHHHHHhC
Confidence 9998887 5899999999999988 889999999999999975
No 10
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=1.6e-52 Score=400.03 Aligned_cols=218 Identities=31% Similarity=0.451 Sum_probs=184.9
Q ss_pred HcCCcEEEEeCCCcCccCCCCCcCCCCCCCcCCCCC---CChHHHhhchhHHHHHHHHHhhhhhcccCCCCCHHHHHHHH
Q 016198 120 DNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALAS 196 (393)
Q Consensus 120 ~~ak~IVVlTGAGISasSGIPdFRs~~Gl~~~~~~p---~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~~H~~La~ 196 (393)
++|++|||+||||||++||||||||++|+|.+ +.+ .++..|.++|..+|+||.+... .....+++||.+|++|++
T Consensus 2 ~~~~~ivvlTGAGiS~~SGIPdFR~~~Glw~~-~~~~~~~~~~~f~~~p~~~~~f~~~~~~-~~~~~~~~Pn~~H~~L~~ 79 (242)
T PTZ00408 2 KACRCITILTGAGISAESGISTFRDGNGLWEN-HRVEDVATPDAFLRNPALVQRFYNERRR-ALLSSSVKPNKAHFALAK 79 (242)
T ss_pred CCCCeEEEEeCcchhhhhCCCcccCCCCCCCC-CChhhcCCHHHHHhCHHHHHHHHHHHHH-HhccCCCCCCHHHHHHHH
Confidence 46899999999999999999999999999974 443 4778899999888888753211 111357899999999999
Q ss_pred HHhc--CCccEEEEccCcchhhhcCCCc-eeeecccceeecCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCCCCCCC
Q 016198 197 LEKA--GRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDR 273 (393)
Q Consensus 197 L~~~--g~l~~ViTQNIDgLh~rAG~~~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~~~p~~~~ 273 (393)
|++. |++++||||||||||++||.+. +|+||++++++|++|++.++.+..
T Consensus 80 Le~~~~~~~~~iiTQNiDgLh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~~--------------------------- 132 (242)
T PTZ00408 80 LEREYRGGKVVVVTQNVDNLHERAGSTHVLHMHGELLKVRCTATGHVFDWTED--------------------------- 132 (242)
T ss_pred HHHhhcCCcEEEEeecccchhhHcCCCcEEEecCccceEEECCCCcccCchhh---------------------------
Confidence 9976 7889999999999999999987 999999999999999987653210
Q ss_pred CcCcccCCCCCcccccccccccCCCCcCCCCC--CccCCh-----H---HHHHHHHHHhhCCeEEEeccCcchhhHHHHH
Q 016198 274 SFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCN--GVLKPD-----D---RADKAMEAAKECDAFLVLGSSLMTMSAYRLV 343 (393)
Q Consensus 274 ~~g~~~~~d~d~~i~~~~~~~~~~iP~Cp~CG--g~LrP~-----~---~~~~a~~~~~~aDllLVvGTSl~V~p~~~lv 343 (393)
+ ...+|.||.|| |.+||+ + ..+.+.+++++||++|||||||+|+|+++|+
T Consensus 133 -------------~-------~~~~p~C~~Cg~~g~lrP~vV~FGE~~~~~~~~~~~~~~~DlllviGTSl~V~pa~~l~ 192 (242)
T PTZ00408 133 -------------V-------VHGSSRCKCCGCVGTLRPHIVWFGEMPLYMDEIESVMSKTDLFVAVGTSGNVYPAAGFV 192 (242)
T ss_pred -------------h-------hcCCCccccCCCCCCCCCCEEEcCCCCCcHHHHHHHHHhCCEEEEEccCCccccHHHHH
Confidence 0 01368999998 999999 3 2345556789999999999999999999999
Q ss_pred HHHHhCCCeEEEECCCCCCCCCcccEEEECcHHHHHHHHHHhC
Q 016198 344 RAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 344 ~~a~~~ga~li~IN~~~t~~d~~~~l~I~~d~~~vL~~L~~~~ 386 (393)
..++++|+++++||++++..++.+++.|.++++++|++|++.+
T Consensus 193 ~~a~~~g~~vi~IN~~~~~~~~~~~~~i~g~~~~~l~~l~~~~ 235 (242)
T PTZ00408 193 GRAQFYGATTLELNLEEGTNYSQFDESIYGKASVIVPAWVDRV 235 (242)
T ss_pred HHHHHcCCeEEEECCCCCCCCccCCEEEECCHHHHHHHHHHHH
Confidence 9999999999999999998888889999999999999998743
No 11
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=1.1e-52 Score=397.47 Aligned_cols=209 Identities=33% Similarity=0.624 Sum_probs=182.3
Q ss_pred HHHHHHcCCcEEEEeCCCcCccCCCCCcCCCCCCCcCC--CCC---CChHHHhhchhHHHHHHHHHhhhhhcccCCCCCH
Q 016198 115 LYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSG--FKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNP 189 (393)
Q Consensus 115 l~~~i~~ak~IVVlTGAGISasSGIPdFRs~~Gl~~~~--~~p---~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~ 189 (393)
|+++|++|++|||+||||||++|||||||+++|+|... +.+ .++..|..+|..+|.||.+.+ .+.+++||.
T Consensus 1 ~~~~i~~a~~ivv~tGAGiS~~sGIpdfR~~~G~w~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~----~~~~~~Pn~ 76 (225)
T cd01411 1 LQHILKNAKRIVFFTGAGVSTASGIPDYRSKNGLYNEIYKYSPEYLLSHDFLEREPEKFYQFVKENL----YFPDAKPNI 76 (225)
T ss_pred ChHHHhhCCCEEEEECCccccccCCCCccCCCcCccCcCCCChHHeecHHHHHHCHHHHHHHHHHHh----hCCCCCCCH
Confidence 46789999999999999999999999999999999863 344 366778888888877776432 245899999
Q ss_pred HHHHHHHHHhcCCccEEEEccCcchhhhcCCCc-eeeecccceeecCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCC
Q 016198 190 AHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGS 268 (393)
Q Consensus 190 ~H~~La~L~~~g~l~~ViTQNIDgLh~rAG~~~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~~~ 268 (393)
+|++|++|++.+ +++||||||||||++||.+. +|+||++.+++|.+|+..++.+.+
T Consensus 77 ~H~~La~L~~~~-~~~viTQNvD~Lh~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~---------------------- 133 (225)
T cd01411 77 IHQKMAELEKMG-LKAVITQNIDGLHQKAGSKNVVEFHGSLYRIYCTVCGKTVDWEEY---------------------- 133 (225)
T ss_pred HHHHHHHHHHcC-CcEEEEeccchhhhhcCCCcEEEeCCCcCeeEeCCCCCccchhhc----------------------
Confidence 999999999887 89999999999999999887 999999999999999877653210
Q ss_pred CCCCCCcCcccCCCCCcccccccccccCCCCcCCCCCCccCCh----------HHHHHHHHHHhhCCeEEEeccCcchhh
Q 016198 269 PGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPD----------DRADKAMEAAKECDAFLVLGSSLMTMS 338 (393)
Q Consensus 269 p~~~~~~g~~~~~d~d~~i~~~~~~~~~~iP~Cp~CGg~LrP~----------~~~~~a~~~~~~aDllLVvGTSl~V~p 338 (393)
..+|+||.|||+|||+ +.++++.++++++|++||||||+.|+|
T Consensus 134 ---------------------------~~~p~C~~Cgg~lrP~vv~fge~~~~~~~~~~~~~~~~~DlllviGTSl~v~p 186 (225)
T cd01411 134 ---------------------------LKSPYHAKCGGVIRPDIVLYEEMLNESVIEEAIQAIEKADLLVIVGTSFVVYP 186 (225)
T ss_pred ---------------------------CCCCCCCCCCCEeCCCEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcCCeehh
Confidence 1369999999999999 458889999999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEECCCCCCCCCcccEEEECcHHHHH
Q 016198 339 AYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEIL 379 (393)
Q Consensus 339 ~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~~d~~~vL 379 (393)
+++++..++ +|+++|+||+++++.+..++++|++ +++++
T Consensus 187 ~~~l~~~~~-~~~~~i~iN~~~~~~~~~~~~~~~~-~~~~~ 225 (225)
T cd01411 187 FAGLIDYRQ-AGANLIAINKEPTQLDSPATLVIKD-AVKVF 225 (225)
T ss_pred HHHHHHHHh-CCCeEEEECCCCCCCCcchhehhcc-hhhhC
Confidence 999998775 7999999999999999999999999 88763
No 12
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=100.00 E-value=5.9e-52 Score=391.55 Aligned_cols=211 Identities=38% Similarity=0.653 Sum_probs=183.5
Q ss_pred CcEEEEeCCCcCccCCCCCcCCCCCCCcCCCCC---CChHHHhhchhHHHHHHHHHhhhhhcccCCCCCHHHHHHHHHHh
Q 016198 123 AKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLEK 199 (393)
Q Consensus 123 k~IVVlTGAGISasSGIPdFRs~~Gl~~~~~~p---~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~~H~~La~L~~ 199 (393)
++|||+||||||++|||||||+.+|+|++ +.+ .+...|..+|..+|.||.+.. ..+..++||.+|++|++|++
T Consensus 1 ~~ivi~tGAGiS~~sGIp~fR~~~g~~~~-~~~~~~~~~~~f~~~p~~~w~f~~~~~---~~~~~~~Pn~~H~~L~~L~~ 76 (224)
T cd01412 1 RRVVVLTGAGISAESGIPTFRDADGLWAR-FDPEELATPEAFARDPELVWEFYNWRR---RKALRAQPNPAHLALAELER 76 (224)
T ss_pred CcEEEEeCCccchhhCCCCccCcCCCcCC-CChhhcCCHHHHHHCHHHHHHHHHHHH---HHccccCCCHHHHHHHHHHh
Confidence 57999999999999999999999999974 444 367778888887776665322 12458999999999999999
Q ss_pred cCCccEEEEccCcchhhhcCCCc-eeeecccceeecCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCCCCCCCCcCcc
Q 016198 200 AGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMK 278 (393)
Q Consensus 200 ~g~l~~ViTQNIDgLh~rAG~~~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~~~p~~~~~~g~~ 278 (393)
++++++||||||||||++||++. +|+||++..++|..|++.+..+..
T Consensus 77 ~~~~~~viTqNiDgL~~~aG~~~v~e~HG~~~~~~C~~C~~~~~~~~~-------------------------------- 124 (224)
T cd01412 77 RLPNVLLITQNVDGLHERAGSRNVIELHGSLFRVRCSSCGYVGENNEE-------------------------------- 124 (224)
T ss_pred cCCCeEEEEccchHhhHHhCCCceEeeCCCcCccccCCCCCCCCcchh--------------------------------
Confidence 99899999999999999999977 999999999999999987643200
Q ss_pred cCCCCCcccccccccccCCCCcCCCCCCccCCh---------HHHHHHHHHHhhCCeEEEeccCcchhhHHHHHHHHHhC
Q 016198 279 QRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPD---------DRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEA 349 (393)
Q Consensus 279 ~~~d~d~~i~~~~~~~~~~iP~Cp~CGg~LrP~---------~~~~~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ 349 (393)
+ ....+|+||.|||.|||+ +.++.+.++++++|++||||||+.|+|+.++++.++++
T Consensus 125 --------~------~~~~~p~C~~Cgg~lrp~Vv~fge~~p~~~~~~~~~~~~~dl~lvlGTsl~v~p~~~l~~~~~~~ 190 (224)
T cd01412 125 --------I------PEEELPRCPKCGGLLRPGVVWFGESLPLALLEAVEALAKADLFLVIGTSGVVYPAAGLPEEAKER 190 (224)
T ss_pred --------h------hccCCCCCCCCCCccCCceEECCCCCHHHHHHHHHHHHcCCEEEEECcCccchhHHHHHHHHHHC
Confidence 0 012579999999999999 34888999999999999999999999999999988888
Q ss_pred CCeEEEECCCCCCCCCcccEEEECcHHHHHHHHH
Q 016198 350 GSTIAIVNVGETRADDLTTLKISARLGEILPRVL 383 (393)
Q Consensus 350 ga~li~IN~~~t~~d~~~~l~I~~d~~~vL~~L~ 383 (393)
|+++|+||++++..++.+++.|.++++++|++|+
T Consensus 191 ~~~~i~iN~~~~~~~~~~~~~i~g~~~~~l~~l~ 224 (224)
T cd01412 191 GARVIEINPEPTPLSPIADFAFRGKAGEVLPALL 224 (224)
T ss_pred CCeEEEECCCCCCCCCcCCEEEECCHHHHHHHhC
Confidence 9999999999999999999999999999999874
No 13
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=9.4e-52 Score=386.29 Aligned_cols=193 Identities=39% Similarity=0.612 Sum_probs=164.8
Q ss_pred CcEEEEeCCCcCccCCCCCcCCCCCCCcCCCCCCChHHHhhchhHHHHHHHHHhhhhhcccCCCCCHHHHHHHHHHhcCC
Q 016198 123 AKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLEKAGR 202 (393)
Q Consensus 123 k~IVVlTGAGISasSGIPdFRs~~Gl~~~~~~p~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~~H~~La~L~~~g~ 202 (393)
|+|||+||||||++||||||||++|+|.+ +.+ +..+| ..+|. | ..++||++|++|++|++.|+
T Consensus 1 k~ivvltGAGiS~~SGIP~fR~~~Glw~~-~~~-----~~~~~---~~~~~--~------~~~~Pn~~H~~La~l~~~g~ 63 (206)
T cd01410 1 KHLVVFTGAGISTSAGIPDFRGPNGVWTL-LPE-----DKGRR---RFSWR--F------RRAEPTLTHMALVELERAGL 63 (206)
T ss_pred CcEEEEeCCcccHhhCCCcccCcCCCccc-CCc-----cccCh---HHHhh--h------hcCCCCHHHHHHHHHHHCCC
Confidence 57999999999999999999999999975 332 23333 34553 2 15899999999999999999
Q ss_pred ccEEEEccCcchhhhcCCCc---eeeecccceeecCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCCCCCCCCcCccc
Q 016198 203 IDCMITQNVDRLHHRAGSNP---LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQ 279 (393)
Q Consensus 203 l~~ViTQNIDgLh~rAG~~~---ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~~~p~~~~~~g~~~ 279 (393)
+.+||||||||||++||++. +|+||++.+++|.+|+..++.+.+.+.+
T Consensus 64 ~~~viTQNID~Lh~~AG~~~~~vielHG~~~~~~C~~C~~~~~~~~~~~~~----------------------------- 114 (206)
T cd01410 64 LKFVISQNVDGLHLRSGLPREKLSELHGNMFIEVCKSCGPEYVRDDVVETR----------------------------- 114 (206)
T ss_pred CceEEecCccchHhHcCcCcccEEEecCCcCcccCCCCCCccchHHHHHHh-----------------------------
Confidence 99999999999999999863 9999999999999999887654432211
Q ss_pred CCCCCcccccccccccCCCCcCCCCCCccCCh----------HHHHHHHHHHhhCCeEEEeccCcchhhHHHHHHHHHhC
Q 016198 280 RPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPD----------DRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEA 349 (393)
Q Consensus 280 ~~d~d~~i~~~~~~~~~~iP~Cp~CGg~LrP~----------~~~~~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ 349 (393)
.....+|+|+.|||.|||+ ..++++.+++++||++|||||||+|+|+++|+..+++.
T Consensus 115 -------------~~~~~~p~C~~Cgg~lrP~VV~FgE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~~~~~ 181 (206)
T cd01410 115 -------------GDKETGRRCHACGGILKDTIVDFGERLPPENWMGAAAAACRADLFLCLGTSLQVTPAANLPLKAARA 181 (206)
T ss_pred -------------hcCCCCCcCCCCcCccCCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECcCceehhHHHHHHHHHhc
Confidence 0012479999999999999 34889999999999999999999999999999999999
Q ss_pred CCeEEEECCCCCCCCCcccEEEECc
Q 016198 350 GSTIAIVNVGETRADDLTTLKISAR 374 (393)
Q Consensus 350 ga~li~IN~~~t~~d~~~~l~I~~d 374 (393)
|+++|+||+++++.+..++++|+++
T Consensus 182 g~~vi~iN~~~~~~d~~~d~~~~~~ 206 (206)
T cd01410 182 GGRLVIVNLQPTPKDKLADLVIHGD 206 (206)
T ss_pred CCeEEEECCCCCCCCccccEEEeCC
Confidence 9999999999999999999999875
No 14
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=100.00 E-value=5e-51 Score=384.01 Aligned_cols=204 Identities=43% Similarity=0.726 Sum_probs=176.9
Q ss_pred CcEEEEeCCCcCccCCCCCcCCCCCCCcCCCCC----CChHHHhhchhHHHHHHHHHhhhhhcccCCCCCHHHHHHHHHH
Q 016198 123 AKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP----ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLE 198 (393)
Q Consensus 123 k~IVVlTGAGISasSGIPdFRs~~Gl~~~~~~p----~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~~H~~La~L~ 198 (393)
++|||+||||||++|||||||+++|+|+. +.+ .+...|..+|..+|.||.+.+. +..++||++|++|++|+
T Consensus 1 k~ivv~tGAGiS~~sGIpdfR~~~G~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~----~~~~~Pn~~H~~L~~L~ 75 (218)
T cd01407 1 KRIVVLTGAGISTESGIPDFRSPGGLWAR-LDPEELAFSPEAFRRDPELFWGFYRERRY----PLNAQPNPAHRALAELE 75 (218)
T ss_pred CcEEEEeCCccccccCCCcccCCCCcccc-CChhhccCCHHHHHHCHHHHHHHHHHhhh----hccCCCCHHHHHHHHHH
Confidence 57999999999999999999999999985 333 2667788888877777754332 55899999999999999
Q ss_pred hcCCccEEEEccCcchhhhcCCCc-eeeecccceeecCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCCCCCCCCcCc
Q 016198 199 KAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGM 277 (393)
Q Consensus 199 ~~g~l~~ViTQNIDgLh~rAG~~~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~~~p~~~~~~g~ 277 (393)
+.|++++||||||||||++||+++ +|+||++..++|+.|++.++.+.+...+
T Consensus 76 ~~~~~~~viTQNiDgL~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~--------------------------- 128 (218)
T cd01407 76 RKGKLKRVITQNVDGLHQRAGSPKVIELHGSLFRVRCTKCGKEYPRDELQADI--------------------------- 128 (218)
T ss_pred hcCCCeeEEEeccchhHHHcCCCCEEECcCCcCcceeCCCcCCCcHHHHhHhh---------------------------
Confidence 999999999999999999999998 9999999999999999887654321000
Q ss_pred ccCCCCCcccccccccccCCCCcCCCCCCccCCh---------HHHHHHHHHHhhCCeEEEeccCcchhhHHHHHHHHHh
Q 016198 278 KQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPD---------DRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHE 348 (393)
Q Consensus 278 ~~~~d~d~~i~~~~~~~~~~iP~Cp~CGg~LrP~---------~~~~~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~ 348 (393)
....+|+||+|||.|||+ ..++++.++++++|++||||||+.|+|+++++..+++
T Consensus 129 ----------------~~~~~p~C~~Cg~~lrP~Vv~fgE~~p~~~~~a~~~~~~~Dl~lvlGTSl~V~p~~~l~~~~~~ 192 (218)
T cd01407 129 ----------------DREEVPRCPKCGGLLRPDVVFFGESLPEELDEAAEALAKADLLLVIGTSLQVYPAAGLPLYAPE 192 (218)
T ss_pred ----------------ccCCCCcCCCCCCccCCCeEECCCCCcHHHHHHHHHHhcCCEEEEeCCCcccccHHHHHHHHHH
Confidence 112579999999999999 3389999999999999999999999999999999988
Q ss_pred CCCeEEEECCCCCCCCCcccEEEECc
Q 016198 349 AGSTIAIVNVGETRADDLTTLKISAR 374 (393)
Q Consensus 349 ~ga~li~IN~~~t~~d~~~~l~I~~d 374 (393)
+|+++|+||++++..++.+++.|+++
T Consensus 193 ~~~~~i~iN~~~~~~~~~~d~~~~~~ 218 (218)
T cd01407 193 RGAPVVIINLEPTPADRKADLVILGD 218 (218)
T ss_pred CCCeEEEECCCCCCCCccceEEEeCC
Confidence 99999999999999999999999875
No 15
>PTZ00410 NAD-dependent SIR2; Provisional
Probab=100.00 E-value=7.7e-49 Score=389.49 Aligned_cols=233 Identities=24% Similarity=0.413 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHHc--CCcEEEEeCCCcCccCCCCCcCCC-CCCCcCC--C---CC---CChHHHhhchhHHHHHHHHHhh
Q 016198 109 IEDINQLYQFFDN--SAKLIVLTGAGISTECGIPDYRSP-NGAYSSG--F---KP---ITHQQFVRSSRARRRYWARSYA 177 (393)
Q Consensus 109 ~~~l~~l~~~i~~--ak~IVVlTGAGISasSGIPdFRs~-~Gl~~~~--~---~p---~~~~~f~~~~~~~~~~w~~~~~ 177 (393)
..+++.|+++|++ +++|||+|||||||+||||||||+ +|+|... + .| ++...|.++|..+|.||.+ +.
T Consensus 14 ~~~l~~la~~I~~~~ak~IVvlTGAGISteSGIPdFRs~~~Glw~~~~~~~~~~pe~~fs~~~f~~~P~~f~~~~r~-~~ 92 (349)
T PTZ00410 14 EPTFEGLARYIERNNVTKILVMVGAGISVAAGIPDFRSPHTGIYAKLGKYNLNSPTDAFSLTLLREKPEVFYSIARE-MD 92 (349)
T ss_pred hHHHHHHHHHHHhcCCCCEEEEECcccccccCCCcccCcCCCcCccccccCCCCHHHHcCHHHHHHCHHHHHHHHHH-hh
Confidence 3568899999997 679999999999999999999999 5999752 2 22 3556677788766555532 22
Q ss_pred hhhcccCCCCCHHHHHHHHHHhcCCccEEEEccCcchhhhcCCCc---eeeecccceeecCCCCcccchhhHHHHHHhhC
Q 016198 178 GWRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP---LELHGTVYTVVCLDCGFSFCRDLFQDQVKALN 254 (393)
Q Consensus 178 ~~~~~~~a~Pn~~H~~La~L~~~g~l~~ViTQNIDgLh~rAG~~~---ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~n 254 (393)
.|. .+++||++|++|+.|++.|++.+||||||||||++||++. +|+||++++++|..|++.|+.+.....+
T Consensus 93 ~~~--~~a~Pn~aH~aLa~Le~~G~l~~vITQNIDgLh~rAG~~~~~ViElHGsl~~~~C~~C~~~~~~~~~~~~~---- 166 (349)
T PTZ00410 93 LWP--GHFQPTAVHHFIRLLADEGRLLRCCTQNIDGLERAAGVPPSLLVEAHGSFSAASCIECHTPYDIEQAYLEA---- 166 (349)
T ss_pred ccc--CcCCCCHHHHHHHHHHhcCCcceEEecchhhhHhhcCCCcccEEEeccCCCeeEeCCCCCCcchhHHHHHh----
Confidence 221 3689999999999999999999999999999999999874 9999999999999999877643221100
Q ss_pred hhHHHHHhhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCcCCCCCCccCCh---------HHHHHHHHHHhhCC
Q 016198 255 PKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPD---------DRADKAMEAAKECD 325 (393)
Q Consensus 255 p~~~~~~~~l~~~~p~~~~~~g~~~~~d~d~~i~~~~~~~~~~iP~Cp~CGg~LrP~---------~~~~~a~~~~~~aD 325 (393)
....+|+|+.|||+|||+ +.+..+.+++++||
T Consensus 167 ---------------------------------------~~~~vP~C~~CgG~lRPdVVlFGE~lp~~~~~a~~~~~~aD 207 (349)
T PTZ00410 167 ---------------------------------------RSGKVPHCSTCGGIVKPDVVFFGENLPDAFFNVHHDIPEAE 207 (349)
T ss_pred ---------------------------------------hcCCCCCCCCCCCccCCcEEecCCcCCHHHHHHHHHHHhCC
Confidence 012579999999999999 22333888999999
Q ss_pred eEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCC------------------------------------------
Q 016198 326 AFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRA------------------------------------------ 363 (393)
Q Consensus 326 llLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~------------------------------------------ 363 (393)
++|||||||+|+|++.++..+. +++++|+||++++..
T Consensus 208 llLVIGTSL~V~Paa~l~~~a~-~~~pvviIN~e~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (349)
T PTZ00410 208 LLLIIGTSLQVHPFALLACVVP-KDVPRVLFNLERVGGLMFRFPTDPLTTFHADSVAKEGRSSSSSSRSSSDSSTSSSSD 286 (349)
T ss_pred EEEEECcCCcccCHHHHHHHHh-cCCCEEEECccccCCceeeccCCccccchhhhhhhcccCcccccccccccccccccc
Confidence 9999999999999999998876 689999999875211
Q ss_pred -------------CCcccEEEECcHHHHHHHHHHhCCC
Q 016198 364 -------------DDLTTLKISARLGEILPRVLDVGSL 388 (393)
Q Consensus 364 -------------d~~~~l~I~~d~~~vL~~L~~~~~~ 388 (393)
+..+|+.+.|||++-...|++.|+.
T Consensus 287 g~~~~~~~~~~~~~~~~d~~~~g~~~~~~~~~~~~lg~ 324 (349)
T PTZ00410 287 GYGQFGDYEADPGGVCRDIFFPGDCQESVRRLAEALGL 324 (349)
T ss_pred ccccccccccCccccccceeecccchHHHHHHHHHhCc
Confidence 1145677899999998899888875
No 16
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=100.00 E-value=8.4e-45 Score=340.69 Aligned_cols=203 Identities=41% Similarity=0.647 Sum_probs=171.7
Q ss_pred CcEEEEeCCCcCccCCCCCcCCCC-CCCcCCCC-C--CChHHHhhchhHHHHHHHHHhhhhhcccCCCCCHHHHHHHHHH
Q 016198 123 AKLIVLTGAGISTECGIPDYRSPN-GAYSSGFK-P--ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLE 198 (393)
Q Consensus 123 k~IVVlTGAGISasSGIPdFRs~~-Gl~~~~~~-p--~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~~H~~La~L~ 198 (393)
++|||+||||||++|||||||+.+ |+|+.... . .+...|..+|...|.||.+.+. ....++||++|++|++|+
T Consensus 1 k~iv~~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~P~~~H~~l~~l~ 77 (222)
T cd00296 1 KRVVVFTGAGISTESGIPDFRGLGTGLWTRLDPEELAFSPEAFRRDPELFWLFYKERRY---TPLDAKPNPAHRALAELE 77 (222)
T ss_pred CCEEEEeCCccccccCCCCccccccchhhcCCcccccCCHHHHHHCHHHHHHHHHHHHh---hhCcCCCCHHHHHHHHHH
Confidence 579999999999999999999999 99985221 1 2567777777766666643221 345899999999999999
Q ss_pred hcCCccEEEEccCcchhhhcCCC--c-eeeecccceeecCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCCCCCCCCc
Q 016198 199 KAGRIDCMITQNVDRLHHRAGSN--P-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSF 275 (393)
Q Consensus 199 ~~g~l~~ViTQNIDgLh~rAG~~--~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~~~p~~~~~~ 275 (393)
+.|++.+|||||||+||++||++ . +|+||++...+|..|+..++.+.+.+
T Consensus 78 ~~~~~~~iiTqNiD~L~~~ag~~~~~v~~lHG~~~~~~C~~C~~~~~~~~~~~--------------------------- 130 (222)
T cd00296 78 RKGKLKRIITQNVDGLHERAGSRRNRVIELHGSLDRVRCTSCGKEYPRDEVLE--------------------------- 130 (222)
T ss_pred HcCCCceEEecChHHHHHHhCCCcCcEEEecCCCCccEECCCCCCcchhhhhh---------------------------
Confidence 99999999999999999999998 4 99999999999999998765432210
Q ss_pred CcccCCCCCcccccccccccCCCCcCCCCCCccCCh----------HHHHHHHHHHhhCCeEEEeccCcchhhHHHHHHH
Q 016198 276 GMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPD----------DRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRA 345 (393)
Q Consensus 276 g~~~~~d~d~~i~~~~~~~~~~iP~Cp~CGg~LrP~----------~~~~~a~~~~~~aDllLVvGTSl~V~p~~~lv~~ 345 (393)
...+|+||+|||.|||+ ..+.++.+++.++|++|+|||||+|+|+.++++.
T Consensus 131 -------------------~~~~p~C~~C~~~l~p~v~~fge~~~~~~~~~~~~~~~~~d~llviGtSl~v~~~~~l~~~ 191 (222)
T cd00296 131 -------------------REKPPRCPKCGGLLRPDVVDFGEALPKEWFDRALEALLEADLVLVIGTSLTVYPAARLLLR 191 (222)
T ss_pred -------------------ccCCCCCCCCCCcccCceEECCCCCCHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHH
Confidence 02579999999999999 2378888999999999999999999999999999
Q ss_pred HHhCCCeEEEECCCCCCCC--CcccEEEECc
Q 016198 346 AHEAGSTIAIVNVGETRAD--DLTTLKISAR 374 (393)
Q Consensus 346 a~~~ga~li~IN~~~t~~d--~~~~l~I~~d 374 (393)
+.++|+++++||++++..+ ...++.+.++
T Consensus 192 ~~~~~~~~~~in~~~~~~~~~~~~~~~~~~~ 222 (222)
T cd00296 192 APERGAPVVIINREPTPADALKKADLVILGD 222 (222)
T ss_pred HHHCCCcEEEECCCCCCCCCCCcceEEEeCC
Confidence 9888999999999999998 7778877653
No 17
>KOG2684 consensus Sirtuin 5 and related class III sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=3.5e-44 Score=355.90 Aligned_cols=297 Identities=22% Similarity=0.348 Sum_probs=210.8
Q ss_pred eeecccCcHHHHhhhhcccceeecCCchheeeeeeeeecCCCCCCCCCCcCC-------CChhhhcccCCCCCCCCCCHH
Q 016198 38 KSEIVQSSIKAQQLLSKGRRVFPHQGSVKFVQTSWRMSIPGLPSSRHEDKAP-------ASPKVLRDKKAVPDADPPSIE 110 (393)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-------~~~~~~~~~~~~p~~~~~~~~ 110 (393)
+.|+..+++.+|+...+.+.+..-....--++... ..+|.. .....+-.. +.+++.++ +..+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~s-~~~~~~~~~~~~l~~~l~~~~~~r------~~~~~~~ 76 (412)
T KOG2684|consen 5 VSDWSHASTSDSKLRVNQREFPCGLQSRHILKELV-PLIPPS-REYSQEVNLLKDLQSTLLSECLKR------ARLSNFN 76 (412)
T ss_pred hhhhhcccccchHHHHhhcccccCcchHHHHHhcC-cccCCc-hhhchhhcccccHHHHHhhhhhhh------ccCCccc
Confidence 45667788889997777666653333222222222 111111 111111111 22222222 1223357
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCcCccCCCCCcCCCCCCCcCCCC--CCChHH------HhhchhHHHHHHHHHhhhhhcc
Q 016198 111 DINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFK--PITHQQ------FVRSSRARRRYWARSYAGWRRF 182 (393)
Q Consensus 111 ~l~~l~~~i~~ak~IVVlTGAGISasSGIPdFRs~~Gl~~~~~~--p~~~~~------f~~~~~~~~~~w~~~~~~~~~~ 182 (393)
+++.+..+|++|++|||+||||||+++|||||||.+|+|+.-.. .-++++ |..+|..++.|-. .-..
T Consensus 77 t~~~~~~~l~kaKrIvVlTGAGVSvs~GIPDFRSs~G~ys~l~~~~l~sp~~mFd~~~fr~d~~~F~~~a~-----~l~~ 151 (412)
T KOG2684|consen 77 TLADFVKLLKKAKRIVVLTGAGVSVSAGIPDFRSSEGIYSKLKAPDLPSPQAMFDISYFRDDPSIFYRFAR-----ELKP 151 (412)
T ss_pred cHHHHHHHHHhcCeEEEEeCCceeeecCCCCccccccHHHHhhcccCCCHHHhccchhhhcccHHHHHHHH-----HhcC
Confidence 89999999999999999999999999999999999999986222 124444 4444432222221 1122
Q ss_pred cCCCCCHHHHHHHHHHhcCCccEEEEccCcchhhhcCCCc---eeeecccceeecCCCCcccchhhHHHHHHhhChhHHH
Q 016198 183 MAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP---LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAE 259 (393)
Q Consensus 183 ~~a~Pn~~H~~La~L~~~g~l~~ViTQNIDgLh~rAG~~~---ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~np~~~~ 259 (393)
....|++.|.+|+.|+++||+.++||||||+|+++||... +|+|||+..+.|.+|++.++.+.+.+.+.
T Consensus 152 ~~~~ps~~H~Fi~~L~~~gkLlR~YTQNID~LE~~aGl~~~~lVq~HGSf~t~sCt~C~~k~~~~~~~~~~~-------- 223 (412)
T KOG2684|consen 152 PSNNPSAFHEFIKLLEKKGKLLRNYTQNIDGLERKAGLSTNKLVQCHGSFKTASCTKCGYKKPFEELREDIR-------- 223 (412)
T ss_pred CccCCchHHHHHHHHHhcCceeEEeecccchhhhccCCCcCceEEeccccceeeecccccccChHHHHHHHh--------
Confidence 3566999999999999999999999999999999999976 99999999999999999888765433221
Q ss_pred HHhhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCcCCCCCC------------------ccCCh----------
Q 016198 260 AIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNG------------------VLKPD---------- 311 (393)
Q Consensus 260 ~~~~l~~~~p~~~~~~g~~~~~d~d~~i~~~~~~~~~~iP~Cp~CGg------------------~LrP~---------- 311 (393)
...+|.||.|.+ .|||+
T Consensus 224 -----------------------------------~~~vp~CP~C~~~~~~r~~~g~r~~~~~vgvlrP~IvffgE~lP~ 268 (412)
T KOG2684|consen 224 -----------------------------------NQEVPVCPDCEGKNEKRRGAGKRCESEGVGVLRPDIVFFGENLPD 268 (412)
T ss_pred -----------------------------------cCcCccCcccccccccccCccccccccCccccccceEEecCCCCh
Confidence 125788999966 89999
Q ss_pred HHHHHHHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCCcccEEEECcHHHHHHHHHHhCCCCCC
Q 016198 312 DRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSLSIP 391 (393)
Q Consensus 312 ~~~~~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~~d~~~vL~~L~~~~~~~~~ 391 (393)
...........++||+|||||||+|+|+++++.... +.++.|.||.++-. +..+++.+.++|+++...+...++...|
T Consensus 269 ~~~~~~~~d~d~~DllIviGTSLKV~pV~~iv~~~~-~~vpqIliNr~~v~-h~efd~~ll~~CD~v~~~l~~~~g~~~~ 346 (412)
T KOG2684|consen 269 SFHIGVGADLDECDLLIVIGTSLKVRPVAEIVKSFP-AKVPQILINRDPVP-HAEFDVELLGDCDDVIRLLCQKCGWLKP 346 (412)
T ss_pred HHHhhhhccccccceEEEeCCccccccHHHHHhhhc-ccCcEEEecCcccc-ccccChhhccchHHHHHHHHhhccccch
Confidence 233444455678899999999999999999999876 36799999998433 3456788888999999999998887765
Q ss_pred C
Q 016198 392 A 392 (393)
Q Consensus 392 ~ 392 (393)
.
T Consensus 347 ~ 347 (412)
T KOG2684|consen 347 L 347 (412)
T ss_pred H
Confidence 3
No 18
>KOG1905 consensus Class IV sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=4.5e-45 Score=348.34 Aligned_cols=228 Identities=34% Similarity=0.573 Sum_probs=191.4
Q ss_pred HHHHHHHHHHHHcCCcEEEEeCCCcCccCCCCCcCCCCCCCcCCCCCCChHHHhhchhHHHHHHHHHhhhhhcccCCCCC
Q 016198 109 IEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSRARRRYWARSYAGWRRFMAAQPN 188 (393)
Q Consensus 109 ~~~l~~l~~~i~~ak~IVVlTGAGISasSGIPdFRs~~Gl~~~~~~p~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn 188 (393)
..++++|++++++++.+||+|||||||+||||||||++|+|....+. .+ ...-.|..|+|+
T Consensus 42 ~~kv~elA~li~~sk~lvv~tGAGISTaa~IPDfRGp~GVWTL~~kG-------~~------------~~~~df~~ArPt 102 (353)
T KOG1905|consen 42 RTKVEELAQLIQQSKHLVVYTGAGISTAAGIPDFRGPQGVWTLQQKG-------KD------------KFGVDFSEARPT 102 (353)
T ss_pred HHHHHHHHHHHhhCCcEEEEeCCccccccCCCCccCCCceeehhhcC-------cc------------ccCCchhhcCCc
Confidence 57899999999999999999999999999999999999999741111 00 111246689999
Q ss_pred HHHHHHHHHHhcCCccEEEEccCcchhhhcCCCc---eeeecccceeecCCCCcccchhhHHHHHHhhChhHHHHHhhhc
Q 016198 189 PAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP---LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLD 265 (393)
Q Consensus 189 ~~H~~La~L~~~g~l~~ViTQNIDgLh~rAG~~~---ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~ 265 (393)
.+|++|-+|++.|.+++||||||||||.|+|++. .|+|||++-.+|.+|...|.++...+.+.
T Consensus 103 ~THmai~~Lhr~gll~~viSQNvDGLhlrsGlPr~~LsElHGNmfiEvC~sC~~~yvr~~~v~t~g-------------- 168 (353)
T KOG1905|consen 103 VTHMAIVALHRAGLLKHVISQNVDGLHLRSGLPREKLSELHGNMFIEVCKSCRPEYVRDRVVDTVG-------------- 168 (353)
T ss_pred chHHHHHHHHHcchhhhhhhccccchhhccCCCHHHHHHHhcchHHHHhhhhcccceehhheeecc--------------
Confidence 9999999999999999999999999999999998 99999999999999998887654433221
Q ss_pred CCCCCCCCCcCcccCCCCCcccccccccccCCCCcC---CCCCCccCCh----------HHHHHHHHHHhhCCeEEEecc
Q 016198 266 YGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTC---QKCNGVLKPD----------DRADKAMEAAKECDAFLVLGS 332 (393)
Q Consensus 266 ~~~p~~~~~~g~~~~~d~d~~i~~~~~~~~~~iP~C---p~CGg~LrP~----------~~~~~a~~~~~~aDllLVvGT 332 (393)
+ .+.+ .....-+| ..|-|.|+-. ..++.|.++.+.||++|.+||
T Consensus 169 -----------l--~at~----------R~ct~~k~~~~rscrg~l~d~~ldwe~~lpln~l~~a~~a~~~Ad~~lcLGT 225 (353)
T KOG1905|consen 169 -----------L--KATG----------RHCTGRKCRKCRSCRGTLRDFGLDWEDELPLNDLDRATKAAKRADLILCLGT 225 (353)
T ss_pred -----------c--cccc----------ccccccccccccccccchhhccccccccCCchhhHHHHHHhhhcceEEEecc
Confidence 0 0110 11123344 4444555644 458899999999999999999
Q ss_pred CcchhhHHHHHHHHHhCCCeEEEECCCCCCCCCcccEEEECcHHHHHHHHHHhCCCCCCC
Q 016198 333 SLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSLSIPA 392 (393)
Q Consensus 333 Sl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~~d~~~vL~~L~~~~~~~~~~ 392 (393)
||++.|...++..+.+.|+++++||+++|.-|..++++|++++++||..|++.|+++||+
T Consensus 226 SLqI~p~g~lpl~~~k~g~K~~ivNlQ~T~hDk~A~l~Ihg~vd~Vm~~lm~~LgveIp~ 285 (353)
T KOG1905|consen 226 SLQILPKGNLPLKMKKRGGKIVIVNLQWTPHDKIANLKIHGKVDLVMASLMELLGVEIPA 285 (353)
T ss_pred ceEeeeCCCcchhHhccCceEEEEeCccCcccchhheeehhhHHHHHHHHHHHhCCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999996
No 19
>PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases. This family of enzymes is broadly conserved from bacteria to humans. In yeast, Sir2 proteins form complexes with other proteins to silence chromatin by accessing histones and deacetylating them. Sir2 proteins have been proposed to play a role in silencing, chromosome stability and ageing []. The bacterial enzyme CobB, an homologue of Sir2, is a phosphoribosyltransferase []. An in vitro ADP ribosyltransferase activity has also been associated with human members of this family []. Sir2-like enzymes employ NAD+ as a cosubstrate in deacetylation reactions [] and catalyse a reaction in which the cleavage of NAD(+)and histone and/or protein deacetylation are coupled to the formation of O-acetyl-ADP-ribose, a novel metabolite. The dependence of the reaction on both NAD(+) and the generation of this potential second messenger offers new clues to understanding the function and regulation of nuclear, cytoplasmic and mitochondrial Sir2-like enzymes []. Silent Information Regulator protein of Saccharomyces cerevisiae (Sir2) is one of several factors critical for silencing at least three loci. Among them, it is unique because it silences the rDNA as well as the mating type loci and telomeres []. Sir2 interacts in a complex with itself and with Sir3 and Sir4, two proteins that are able to interact with nucleosomes. In addition Sir2 also interacts with ubiquitination factors and/or complexes []. Homologues of Sir2 share a core domain including the GAG and NID motifs and a putative C4 Zinc finger. The regions containing these three conserved motifs are individually essential for Sir2 silencing function, as are the four cysteins []. In addition, the conserved residues HG next to the putative Zn finger have been shown to be essential for the ADP ribosyltransferase activity []. ; GO: 0008270 zinc ion binding, 0070403 NAD+ binding, 0006476 protein deacetylation; PDB: 1S5P_A 3PKI_E 3PKJ_F 3K35_A 1ICI_A 1M2K_A 1M2G_A 1M2N_B 1M2H_A 1M2J_A ....
Probab=100.00 E-value=1.5e-43 Score=323.11 Aligned_cols=164 Identities=41% Similarity=0.749 Sum_probs=125.8
Q ss_pred CCCcCccCCCCCcCC-CCCCCcCCCCC---CChHHHhhchhHHHHHHHHHhhhhhcccCCCCCHHHHHHHHHHhcCCccE
Q 016198 130 GAGISTECGIPDYRS-PNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLEKAGRIDC 205 (393)
Q Consensus 130 GAGISasSGIPdFRs-~~Gl~~~~~~p---~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~~H~~La~L~~~g~l~~ 205 (393)
|||||++|||||||| ++|+|.+ +.+ .+.+.|..+|...|..|.+.+..+ ....++||.+|++|++|++.|++++
T Consensus 1 GAGiS~~SGIpdfR~~~~Glw~~-~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~-~~~~a~Pn~~H~~La~L~~~g~~~~ 78 (178)
T PF02146_consen 1 GAGISTASGIPDFRSDPDGLWTK-YKPEELATPEAFFSDPEFVWEKFYRFRRKV-ISKDAEPNPGHRALAELEKKGKLKR 78 (178)
T ss_dssp -GGGGGGGT--SSSSTTSCHHHH-CHHHHHSSHHHHHHHHHHHHHHHHHHHHHH-CTCTS---HHHHHHHHHHHTTSEEE
T ss_pred CCccchhhCCCccccCCCCccee-eeccccccccccccccchhhhHHHHHhhhh-ccccCCCChhHHHHHHHHHhhhhcc
Confidence 899999999999999 8999985 322 356667777766665222111111 1128999999999999999999999
Q ss_pred EEEccCcchhhhcCCCc-eeeecccceeecCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCCCCCCCCcCcccCCCCC
Q 016198 206 MITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGD 284 (393)
Q Consensus 206 ViTQNIDgLh~rAG~~~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~~~p~~~~~~g~~~~~d~d 284 (393)
||||||||||++||+++ +|+||++..++|.+|++.++.+.+.+.+.
T Consensus 79 viTQNIDgLh~~AG~~~vielHG~l~~~~C~~C~~~~~~~~~~~~~~--------------------------------- 125 (178)
T PF02146_consen 79 VITQNIDGLHQKAGSPKVIELHGSLFRLRCSKCGKEYDREDIVDSID--------------------------------- 125 (178)
T ss_dssp EEES-SSSHHHHTTESCEEETTEEEEEEEETTTSBEEEGHHHHHHHH---------------------------------
T ss_pred ceecccchhhhcccchhhHHHHhhhceeeecCCCccccchhhccccc---------------------------------
Confidence 99999999999999999 99999999999999999887665433221
Q ss_pred cccccccccccCCCCcCCCCCCccCCh---------HHHHHHHHHHhhCCeEEEeccCcchhh
Q 016198 285 IEIDEKFWEEDFHIPTCQKCNGVLKPD---------DRADKAMEAAKECDAFLVLGSSLMTMS 338 (393)
Q Consensus 285 ~~i~~~~~~~~~~iP~Cp~CGg~LrP~---------~~~~~a~~~~~~aDllLVvGTSl~V~p 338 (393)
....|+||.||+.|||+ +.++.+.+++++||++|||||||+|+|
T Consensus 126 ----------~~~~~~C~~C~~~lrp~vv~fgE~~~~~~~~~~~~~~~~Dl~lviGTSl~V~P 178 (178)
T PF02146_consen 126 ----------EEEPPRCPKCGGLLRPDVVLFGESLPEEIEEAIEDAEEADLLLVIGTSLQVYP 178 (178)
T ss_dssp ----------TTSSCBCTTTSCBEEEEE--BTSB-SHHHHHHHHHHHH-SEEEEESS-STSTT
T ss_pred ----------ccccccccccCccCCCCeeecCCCCHHHHHHHHHHHHcCCEEEEEccCcEEEC
Confidence 11468999999999999 478889999999999999999999998
No 20
>KOG2682 consensus NAD-dependent histone deacetylases and class I sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.2e-40 Score=309.78 Aligned_cols=230 Identities=24% Similarity=0.405 Sum_probs=187.8
Q ss_pred HHHHHHHHHHHc--CCcEEEEeCCCcCccCCCCCcCCCC-CCCcCC--CC-C-----CChHHHhhchhHHHHHHHHHhhh
Q 016198 110 EDINQLYQFFDN--SAKLIVLTGAGISTECGIPDYRSPN-GAYSSG--FK-P-----ITHQQFVRSSRARRRYWARSYAG 178 (393)
Q Consensus 110 ~~l~~l~~~i~~--ak~IVVlTGAGISasSGIPdFRs~~-Gl~~~~--~~-p-----~~~~~f~~~~~~~~~~w~~~~~~ 178 (393)
-+++.++.+++. .++|+|..||||||++|||||||++ |+|.+. |+ | +....|..+|..++..-.+.|.
T Consensus 22 l~lekvA~~mks~~~~rVi~mVGAGISTsaGIPDFRSP~tGlY~NLqr~~LPYpEAiFel~yF~~nP~PF~tLAkELyP- 100 (314)
T KOG2682|consen 22 LTLEKVARLMKSERCRRVIVMVGAGISTSAGIPDFRSPGTGLYDNLQRYHLPYPEAIFELSYFKKNPEPFFTLAKELYP- 100 (314)
T ss_pred hhHHHHHHHHhhCCcceEEEEecCccccccCCCCCCCCCchhhhhHHHhcCCChhhhhccHHhhcCCchHHHHHHHhCC-
Confidence 358888999874 5799999999999999999999997 999862 22 1 4566788888765544333333
Q ss_pred hhcccCCCCCHHHHHHHHHHhcCCccEEEEccCcchhhhcCCCc---eeeecccceeecC-CCCcccchhhHHHHHHhhC
Q 016198 179 WRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP---LELHGTVYTVVCL-DCGFSFCRDLFQDQVKALN 254 (393)
Q Consensus 179 ~~~~~~a~Pn~~H~~La~L~~~g~l~~ViTQNIDgLh~rAG~~~---ielHGs~~~~~C~-~C~~~~~~~~~~~~l~~~n 254 (393)
.+.+|+.+||+|+.|.++|.+.++||||||+|++.||.+. +|.||++....|. .|++.|+.+.+...+.
T Consensus 101 ----gnfkPt~~HYflrLl~DK~lL~r~YTQNIDtLER~aGv~d~~lvEAHGtFa~s~Ci~~C~~~yp~e~~ka~i~--- 173 (314)
T KOG2682|consen 101 ----GNFKPTITHYFLRLLHDKGLLLRCYTQNIDTLERIAGVPDEDLVEAHGTFATSHCISSCRHEYPLEWMKAKIM--- 173 (314)
T ss_pred ----CCcCchhHHHHHHHHccccHHHHHHhccchHHHHhcCCCHHHHHHhccceeeeeehhhhcCcCCHHHHHHHHH---
Confidence 3789999999999999999999999999999999999987 9999999999999 5999998654432220
Q ss_pred hhHHHHHhhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCcCCCCCCccCCh---------HHH-HHHHHHHhhC
Q 016198 255 PKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPD---------DRA-DKAMEAAKEC 324 (393)
Q Consensus 255 p~~~~~~~~l~~~~p~~~~~~g~~~~~d~d~~i~~~~~~~~~~iP~Cp~CGg~LrP~---------~~~-~~a~~~~~~a 324 (393)
...+|+|+.|+|++||+ .++ +-.......+
T Consensus 174 ----------------------------------------~~~vpkC~vC~~lVKP~IVFfGE~LP~rF~e~~~~D~~~~ 213 (314)
T KOG2682|consen 174 ----------------------------------------SEVVPKCEVCQGLVKPDIVFFGESLPARFFECMQSDFLKV 213 (314)
T ss_pred ----------------------------------------hccCCCCchhhccccccEEEecCCccHHHHHHHhhccccc
Confidence 12689999999999999 444 4555567899
Q ss_pred CeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCC-C---CCcccEEEECcHHHHHHHHHHhCCC
Q 016198 325 DAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETR-A---DDLTTLKISARLGEILPRVLDVGSL 388 (393)
Q Consensus 325 DllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~-~---d~~~~l~I~~d~~~vL~~L~~~~~~ 388 (393)
|++|||||||+|+||++|++.+. ..++-++||.+... + ....|+.+.++|++...+|++.++-
T Consensus 214 dl~lV~GTSL~V~PFAsLpe~vp-~~v~RlLiNre~~Gp~~~~~r~rDv~~lgd~d~~~eaLvelLGW 280 (314)
T KOG2682|consen 214 DLLLVMGTSLQVQPFASLPEKVP-LSVPRLLINREKAGPFLGMIRYRDVAWLGDCDQGVEALVELLGW 280 (314)
T ss_pred ceEEEeccceeeeecccchhhhh-hcCceeEecccccCccccCcccccchhhccHHHHHHHHHHHhCc
Confidence 99999999999999999999876 47888999998643 1 2347888999999999999887763
No 21
>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.
Probab=98.93 E-value=1.1e-08 Score=97.56 Aligned_cols=96 Identities=21% Similarity=0.296 Sum_probs=54.8
Q ss_pred CcEEEEeCCCcCccCCCCCcCCC-CCCCcCC-C--CC-----CChHHHhhchhHH-HHHHHHHh----hhhh-cccCCCC
Q 016198 123 AKLIVLTGAGISTECGIPDYRSP-NGAYSSG-F--KP-----ITHQQFVRSSRAR-RRYWARSY----AGWR-RFMAAQP 187 (393)
Q Consensus 123 k~IVVlTGAGISasSGIPdFRs~-~Gl~~~~-~--~p-----~~~~~f~~~~~~~-~~~w~~~~----~~~~-~~~~a~P 187 (393)
.++|++.|||+|.++|+|++++- ..++... . .. ....++..-.+.. ..++.... .... .....+|
T Consensus 1 g~lvlFiGAG~S~~~glP~W~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (242)
T cd01406 1 GRVVIFVGAGVSVSSGLPDWKTLLDEIASELGLEIDGYSVEAKDENDYLELAELLEKEFGTIGIKINAVLEEKTRPDFEP 80 (242)
T ss_pred CCEEEEecCccccccCCCChHHHHHHHHHHcCCccchhhccccchhhHHHHHHHHHHHhccchhhhHHHHHhccCCCCCC
Confidence 47899999999999999998742 1122110 0 00 0001110000000 00000000 0001 1246789
Q ss_pred CHHHHHHHHHHhcCC-ccEEEEccCcchhhhc
Q 016198 188 NPAHFALASLEKAGR-IDCMITQNVDRLHHRA 218 (393)
Q Consensus 188 n~~H~~La~L~~~g~-l~~ViTQNIDgLh~rA 218 (393)
++.|.+|++|...++ ...|||+|.|.|.++|
T Consensus 81 ~~~h~~i~~l~~~~~~~~~iiTTNyD~llE~a 112 (242)
T cd01406 81 SPLHELLLRLFINNEGDVIIITTNYDRLLETA 112 (242)
T ss_pred CHHHHHHHhchhccCCceEEEEcchHHHHHHH
Confidence 999999999987653 5689999999999877
No 22
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=96.11 E-value=0.063 Score=57.69 Aligned_cols=69 Identities=17% Similarity=0.166 Sum_probs=51.9
Q ss_pred HHHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhCC
Q 016198 316 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 387 (393)
Q Consensus 316 ~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~~ 387 (393)
.+...+++|||+|+||+.+.-+... +...+.. .. +|-|+.++..+.. ..++.|.+|+.++|.+|++.+.
T Consensus 259 ~a~~~~~~aDlll~vG~rf~~~~~~-~~~f~~~-~~-ii~iDidp~ei~k~~~~~~~i~gD~~~~l~~L~~~l~ 329 (550)
T COG0028 259 AANEALEEADLLLAVGARFDDRVTG-YSGFAPP-AA-IIHIDIDPAEIGKNYPVDVPIVGDAKATLEALLEELK 329 (550)
T ss_pred HHHHHhhcCCEEEEecCCCcccccc-hhhhCCc-CC-EEEEeCChHHhCCCCCCCeeEeccHHHHHHHHHHhhh
Confidence 4455678999999999999854444 3333332 23 8999999877665 4788999999999999998764
No 23
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=95.61 E-value=0.012 Score=51.02 Aligned_cols=66 Identities=18% Similarity=0.285 Sum_probs=47.2
Q ss_pred HHHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHH
Q 016198 316 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRV 382 (393)
Q Consensus 316 ~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L 382 (393)
.+.+.+++||++|++|+++............ ....++|.|+.++..... ..++.|.+|+..+|.+|
T Consensus 70 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~-~~~~~~I~I~~d~~~~~~~~~~~~~i~~d~~~~l~~L 137 (137)
T PF00205_consen 70 AANEALEQADLVLAIGTRLSDFNTYGFSPAF-NPDAKIIQIDPDPAEIGKNYPPDVAIVGDIKAFLRAL 137 (137)
T ss_dssp HHHHHHHHSSEEEEESSSSSTTTTTTTTGCS-TTTSEEEEEESSGGGTTSSSEESEEEESHHHHHHHHH
T ss_pred HHHHHhcCCCEEEEECCCCcccccccccccc-CCCCEEEEEECCHHHhCCCCCCCEEEEECHHHHhhCC
Confidence 4556779999999999998543222211111 123489999999987654 36899999999999886
No 24
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=95.53 E-value=0.11 Score=54.45 Aligned_cols=93 Identities=8% Similarity=0.139 Sum_probs=69.4
Q ss_pred eeecccCcHHHHhhhhcccceeecCCchheeeeee------eeecCCCCCCCCCCcCCCChhhhcccCCCCCCCCCCHHH
Q 016198 38 KSEIVQSSIKAQQLLSKGRRVFPHQGSVKFVQTSW------RMSIPGLPSSRHEDKAPASPKVLRDKKAVPDADPPSIED 111 (393)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 111 (393)
+.|-+.|-|.-|.-+.+-.++++....+=.|.|-- .+++|+. - .-|-.-.+.++.-+|.+..+..+|....
T Consensus 142 ~NDcfrPVSRYfDRItRPEQl~sal~rA~~VmTDPA~~GpvTl~l~QD-V--q~eA~Dyp~~FF~~rv~~~rR~~Pd~~e 218 (617)
T COG3962 142 TNDCFRPVSRYFDRITRPEQLMSALPRAMRVMTDPADCGPVTLALCQD-V--QAEAYDYPESFFEKRVWRIRRPPPDERE 218 (617)
T ss_pred cccccccHHHHhhhcCCHHHHHHHHHHHHHHhCChhhcCceEEEechh-h--hhhhcCCcHHhhhhhhhhccCCCCCHHH
Confidence 45889999999999999999998777766665532 5666754 1 1122224455555565566677888999
Q ss_pred HHHHHHHHHcCCcEEEEeCCCc
Q 016198 112 INQLYQFFDNSAKLIVLTGAGI 133 (393)
Q Consensus 112 l~~l~~~i~~ak~IVVlTGAGI 133 (393)
+++++++|+.|++-||+.|.|+
T Consensus 219 L~~A~~lik~ak~PlIvaGGGv 240 (617)
T COG3962 219 LADAAALIKSAKKPLIVAGGGV 240 (617)
T ss_pred HHHHHHHHHhcCCCEEEecCce
Confidence 9999999999999999999874
No 25
>PF13289 SIR2_2: SIR2-like domain
Probab=94.42 E-value=0.27 Score=42.10 Aligned_cols=48 Identities=19% Similarity=0.173 Sum_probs=30.6
Q ss_pred HHHHHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCC----eEEEECCCCC
Q 016198 314 ADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGS----TIAIVNVGET 361 (393)
Q Consensus 314 ~~~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga----~li~IN~~~t 361 (393)
+..+...+-.+..+|+||.|+.=..+..+...+.+... +.++|.+.+.
T Consensus 76 ~~~~l~~~l~~~~~lfiGys~~D~~i~~~l~~~~~~~~~~~~~~~~v~~~~~ 127 (143)
T PF13289_consen 76 FPNFLRSLLRSKTLLFIGYSFNDPDIRQLLRSALENSGKSRPRHYIVIPDPD 127 (143)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHHhccCCCccEEEEEcCCc
Confidence 34444444467788899999987777777766554333 3555555443
No 26
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.02 E-value=0.13 Score=55.28 Aligned_cols=69 Identities=13% Similarity=0.238 Sum_probs=50.4
Q ss_pred HHHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 016198 316 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 316 ~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~ 386 (393)
.+.+.+++||++|+|||++..+........ ..++++|.||.++..... ..++.|.+|+..+|..|++.+
T Consensus 265 ~~~~~l~~aDlvl~vG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l 335 (574)
T PRK07979 265 EANMTMHNADVIFAVGVRFDDRTTNNLAKY--CPNATVLHIDIDPTSISKTVTADIPIVGDARQVLEQMLELL 335 (574)
T ss_pred HHHHHHHhCCEEEEeCCCCcccccCChhhc--CCCCeEEEEECCHHHhCCcccCCeEEecCHHHHHHHHHHhh
Confidence 344577899999999999866543221111 225689999998866543 467899999999999998765
No 27
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.85 E-value=0.13 Score=55.31 Aligned_cols=69 Identities=14% Similarity=0.191 Sum_probs=50.2
Q ss_pred HHHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 016198 316 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 316 ~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~ 386 (393)
.+.+.+++||++|+||+++..+.....-.. ..+.++|.||.++..+.. ..++.|.+|+.++|.+|++.+
T Consensus 265 ~~~~~~~~aD~vl~vG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l 335 (572)
T PRK08979 265 EANMAMHNADLIFGIGVRFDDRTTNNLEKY--CPNATILHIDIDPSSISKTVRVDIPIVGSADKVLDSMLALL 335 (572)
T ss_pred HHHHHHHhCCEEEEEcCCCCccccCchhhc--CCCCeEEEEECCHHHhCCccCCceEEecCHHHHHHHHHHhh
Confidence 345567899999999999876542221111 235789999988765443 468999999999999998865
No 28
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=92.72 E-value=0.15 Score=55.36 Aligned_cols=69 Identities=14% Similarity=0.266 Sum_probs=49.7
Q ss_pred HHHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 016198 316 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 316 ~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~ 386 (393)
.+.+.+.++|++|+|||++.......+... ..+.++|.||.++..+.. ..++.|.+|+..+|.+|++.+
T Consensus 283 ~~~~~l~~aDlvL~vG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~ig~~~~~~~~i~~D~~~~l~~L~~~l 353 (616)
T PRK07418 283 YANFAVTECDLLIAVGARFDDRVTGKLDEF--ASRAKVIHIDIDPAEVGKNRRPDVPIVGDVRKVLVKLLERS 353 (616)
T ss_pred HHHHHHHhCCEEEEEcCCCCccccCChhhc--CCCCeEEEEeCCHHHhCCccCCCeEEecCHHHHHHHHHHhh
Confidence 345577899999999999865332111111 236789999988765432 468899999999999998865
No 29
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.68 E-value=0.15 Score=54.68 Aligned_cols=69 Identities=16% Similarity=0.212 Sum_probs=50.3
Q ss_pred HHHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 016198 316 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 316 ~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~ 386 (393)
.+.+.++++|++|+||+++..+........ ..++++|.||.++..... ..++.|.+|+.++|..|++.+
T Consensus 265 ~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~--~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 335 (574)
T PRK06882 265 EANNAMHESDLILGIGVRFDDRTTNNLAKY--CPNAKVIHIDIDPTSISKNVPAYIPIVGSAKNVLEEFLSLL 335 (574)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCchhhc--CCCCeEEEEECCHHHhcCccCCceEEecCHHHHHHHHHHHh
Confidence 345577899999999999876543222111 235689999988765443 467899999999999998755
No 30
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.35 E-value=0.17 Score=54.33 Aligned_cols=69 Identities=13% Similarity=0.191 Sum_probs=50.1
Q ss_pred HHHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 016198 316 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 316 ~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~ 386 (393)
.+.+.++++|++|+||+++..+........ ..+.++|.||.++..+.. ..++.|.+|+.++|..|++.+
T Consensus 265 ~~~~~l~~aD~il~vG~~~~~~~~~~~~~~--~~~~~vi~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l 335 (574)
T PRK06466 265 EANMAMHHADVILAVGARFDDRVTNGPAKF--CPNAKIIHIDIDPASISKTIKADIPIVGPVESVLTEMLAIL 335 (574)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCchhhc--CCCCeEEEEECCHHHhCCccCCCeEEecCHHHHHHHHHHHh
Confidence 344567899999999999876443222111 235689999988766544 468899999999999998765
No 31
>PRK08322 acetolactate synthase; Reviewed
Probab=92.28 E-value=0.22 Score=53.09 Aligned_cols=68 Identities=9% Similarity=0.172 Sum_probs=50.5
Q ss_pred HHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhCC
Q 016198 317 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 387 (393)
Q Consensus 317 a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~~ 387 (393)
+.+.++++|++|+||+++..++...+. ...+.++|.||.++...+. ..++.|.+|+..+|++|.+.+.
T Consensus 256 ~~~~l~~aDlil~lG~~l~~~~~~~~~---~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 325 (547)
T PRK08322 256 VHCAIEHADLIINVGHDVIEKPPFFMN---PNGDKKVIHINFLPAEVDPVYFPQVEVVGDIANSLWQLKERLA 325 (547)
T ss_pred HHHHHHhCCEEEEECCCCccccccccC---CCCCCeEEEEeCCHHHcCCCcCCCeEEecCHHHHHHHHHHhcc
Confidence 445678999999999998765432221 1236789999988765543 4678999999999999988653
No 32
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.20 E-value=0.19 Score=54.37 Aligned_cols=69 Identities=19% Similarity=0.289 Sum_probs=49.8
Q ss_pred HHHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 016198 316 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 316 ~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~ 386 (393)
.+.+.+++||++|+||+++..+........ ..+.++|.||.++..+.. ..++.|.+|+..+|.+|++.+
T Consensus 273 ~~~~~l~~aDlvL~lG~~~~~~~~~~~~~~--~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l 343 (595)
T PRK09107 273 EANMAMHDCDVMLCVGARFDDRITGRLDAF--SPNSKKIHIDIDPSSINKNVRVDVPIIGDVGHVLEDMLRLW 343 (595)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCchhhc--CCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhh
Confidence 345577899999999999865332111111 235779999998876543 467899999999999998865
No 33
>PRK07524 hypothetical protein; Provisional
Probab=92.12 E-value=0.16 Score=53.92 Aligned_cols=72 Identities=11% Similarity=0.074 Sum_probs=50.1
Q ss_pred HHHHHHHhhCCeEEEeccCcchhhHHH-HHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhCC
Q 016198 315 DKAMEAAKECDAFLVLGSSLMTMSAYR-LVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 387 (393)
Q Consensus 315 ~~a~~~~~~aDllLVvGTSl~V~p~~~-lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~~ 387 (393)
..+.+.++++|++|+||+++....... ..... ..+.++|-||.++..... ..++.|.+|+.++|.+|++.+.
T Consensus 255 ~~~~~~~~~aDlvl~vG~~~~~~~~~~~~~~~~-~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~ 329 (535)
T PRK07524 255 PAVRALIAEADVVLAVGTELGETDYDVYFDGGF-PLPGELIRIDIDPDQLARNYPPALALVGDARAALEALLARLP 329 (535)
T ss_pred HHHHHHHHhCCEEEEeCCCcCcccccccccccc-CCCCCEEEEECCHHHhCCCcCCCceEecCHHHHHHHHHHhcc
Confidence 345567789999999999985432210 00011 235789999988765433 4678999999999999998764
No 34
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=92.01 E-value=0.17 Score=54.75 Aligned_cols=69 Identities=14% Similarity=0.130 Sum_probs=49.3
Q ss_pred HHHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 016198 316 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 316 ~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~ 386 (393)
.+.+.+++||++|+||+++........-. ...+.++|.||.++..+.. ..++.|.+|+..+|++|.+.+
T Consensus 262 ~a~~~l~~aD~iL~lG~~l~~~~t~~~~~--~~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l 332 (588)
T TIGR01504 262 YGNATLLESDFVFGIGNRWANRHTGSVDV--YTEGRKFVHVDIEPTQIGRVFAPDLGIVSDAKAALKLLVEVA 332 (588)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCcccc--cCCCCeEEEeeCCHHHhcCcCCCCeEEEeCHHHHHHHHHHHh
Confidence 34456789999999999986533211111 1236789999988766533 467899999999999998854
No 35
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=91.92 E-value=0.22 Score=53.70 Aligned_cols=69 Identities=16% Similarity=0.297 Sum_probs=48.7
Q ss_pred HHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCC--CcccEEEECcHHHHHHHHHHhCC
Q 016198 317 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRAD--DLTTLKISARLGEILPRVLDVGS 387 (393)
Q Consensus 317 a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d--~~~~l~I~~d~~~vL~~L~~~~~ 387 (393)
+.+.+.+||++|+||+++..+.....- .. ..+.++|.||.++.... ...++.|.+|+.++|.+|++.+.
T Consensus 277 ~~~~l~~aDlvL~lG~~~~~~~~~~~~-~~-~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 347 (585)
T CHL00099 277 ANFAVSECDLLIALGARFDDRVTGKLD-EF-ACNAQVIHIDIDPAEIGKNRIPQVAIVGDVKKVLQELLELLK 347 (585)
T ss_pred HHHHHHhCCEEEEECCCCcccccCCHh-Hc-CCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHHhh
Confidence 344678999999999998654321111 11 23678999998876433 24578999999999999988653
No 36
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=91.83 E-value=0.22 Score=54.09 Aligned_cols=69 Identities=12% Similarity=0.203 Sum_probs=49.2
Q ss_pred HHHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCC--CcccEEEECcHHHHHHHHHHhC
Q 016198 316 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRAD--DLTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 316 ~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d--~~~~l~I~~d~~~vL~~L~~~~ 386 (393)
.+.+.+.++|++|+||+++..+....+... ..++++|.||.++..+. ...++.|.+|+.++|.+|.+.+
T Consensus 290 ~~~~~l~~aDlvL~lG~~l~~~~t~~~~~~--~~~~~~i~Id~d~~~i~~~~~~~~~i~gD~~~~l~~L~~~l 360 (612)
T PRK07789 290 AAVAALQRSDLLIALGARFDDRVTGKLDSF--APDAKVIHADIDPAEIGKNRHADVPIVGDVKEVIAELIAAL 360 (612)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCChhhc--CCCCcEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhh
Confidence 345678899999999999875422111111 23577999998875432 3468999999999999998865
No 37
>PLN02470 acetolactate synthase
Probab=91.82 E-value=0.23 Score=53.54 Aligned_cols=68 Identities=15% Similarity=0.153 Sum_probs=48.2
Q ss_pred HHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 016198 317 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 317 a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~ 386 (393)
+.+.++++|++|+||+++..+......... ...++|.||.++..+.. ..++.|.+|+..+|..|++.+
T Consensus 273 ~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~--~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l 342 (585)
T PLN02470 273 ANYAVDSADLLLAFGVRFDDRVTGKLEAFA--SRASIVHIDIDPAEIGKNKQPHVSVCADVKLALQGLNKLL 342 (585)
T ss_pred HHHHHHhCCEEEEECCCCcccccCChhhcC--CCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhh
Confidence 345678999999999998653321111111 24678999988765433 457889999999999998865
No 38
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.82 E-value=0.23 Score=53.30 Aligned_cols=69 Identities=20% Similarity=0.262 Sum_probs=48.9
Q ss_pred HHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhCC
Q 016198 317 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 387 (393)
Q Consensus 317 a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~~ 387 (393)
+.+.+.++|++|+||+++..+....+-.. ..+.++|.||.++..+.. ..++.|.+|+.++|..|++.+.
T Consensus 263 ~~~~l~~aD~vl~lG~~l~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 333 (563)
T PRK08527 263 ANMAMSECDLLISLGARFDDRVTGKLSEF--AKHAKIIHVDIDPSSISKIVNADYPIVGDLKNVLKEMLEELK 333 (563)
T ss_pred HHHHHHhCCEEEEeCCCCCccccCChhhc--CCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhh
Confidence 34567899999999999865432111111 225679999988765433 4578899999999999988653
No 39
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=91.67 E-value=0.24 Score=53.17 Aligned_cols=69 Identities=14% Similarity=0.123 Sum_probs=49.2
Q ss_pred HHHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 016198 316 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 316 ~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~ 386 (393)
.+.+.+++||++|+||+++.-......-.. ..+.++|.||.++..+.. ..++.|.+|+..+|..|++.+
T Consensus 269 ~~~~~~~~aD~vl~lG~~l~~~~~~~~~~~--~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l 339 (566)
T PRK07282 269 AANIAMTEADFMINIGSRFDDRLTGNPKTF--AKNAKVAHIDIDPAEIGKIIKTDIPVVGDAKKALQMLLAEP 339 (566)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCChhhc--CCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhh
Confidence 344577899999999999864322111111 125789999988765543 357899999999999998865
No 40
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.64 E-value=0.24 Score=53.37 Aligned_cols=69 Identities=17% Similarity=0.209 Sum_probs=49.4
Q ss_pred HHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhCC
Q 016198 317 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 387 (393)
Q Consensus 317 a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~~ 387 (393)
+.+.++++|++|+||+++..+........ ..+.++|.||.++..+.. ..++.|.+|+..+|++|.+.++
T Consensus 274 ~~~~l~~aDlil~vG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~i~~~~~~~~~i~gD~~~~l~~L~~~l~ 344 (570)
T PRK06725 274 ANMAVTECDLLLALGVRFDDRVTGKLELF--SPHSKKVHIDIDPSEFHKNVAVEYPVVGDVKKALHMLLHMSI 344 (570)
T ss_pred HHHHHHhCCEEEEeCCCCCccccCccccc--CCCCeEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHHHHhcc
Confidence 44577899999999999865432111111 125678999988766543 4678999999999999987653
No 41
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=91.45 E-value=0.55 Score=48.70 Aligned_cols=64 Identities=13% Similarity=0.112 Sum_probs=48.6
Q ss_pred HHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 016198 319 EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 319 ~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~ 386 (393)
+.+ ++|++|+||+.+.......+. ...+.++|.|+.++...+. ..++.|.+|+.++|..|++.+
T Consensus 271 ~~~-~aDlvl~lG~~~~~~~~~~~~---~~~~~~~i~vd~d~~~~~~~~~~~~~i~~D~~~~l~~l~~~~ 336 (432)
T TIGR00173 271 EEL-QPDLVIRFGGPPVSKRLRQWL---ARQPAEYWVVDPDPGWLDPSHHATTRLEASPAEFAEALAGLL 336 (432)
T ss_pred hhC-CCCEEEEeCCCcchhHHHHHH---hCCCCcEEEECCCCCccCCCCCceEEEEECHHHHHHHhhhcc
Confidence 345 899999999998665544432 1235789999998876654 457889999999999998765
No 42
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=91.31 E-value=0.26 Score=52.73 Aligned_cols=69 Identities=17% Similarity=0.259 Sum_probs=49.1
Q ss_pred HHHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 016198 316 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 316 ~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~ 386 (393)
.+.+.+.++|++|+||+.+.......+-... .+.++|.||.++..... ..++.|.+|+.++|++|.+.+
T Consensus 260 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~--~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l 330 (558)
T TIGR00118 260 TANLAVHECDLIIAVGARFDDRVTGNLAKFA--PNAKIIHIDIDPAEIGKNVRVDIPIVGDARNVLEELLKKL 330 (558)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCchhhcC--CCCcEEEEeCCHHHhCCcCCCCeEEecCHHHHHHHHHHhh
Confidence 3445678999999999998654221111112 25789999988755433 457899999999999998866
No 43
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=91.12 E-value=0.3 Score=52.79 Aligned_cols=67 Identities=18% Similarity=0.266 Sum_probs=48.0
Q ss_pred HHHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhCC
Q 016198 316 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 387 (393)
Q Consensus 316 ~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~~ 387 (393)
.+.+.++++|++|+|||++... .+.. ...++++|.||.++..... ..++.|.+|+..+|.+|++.++
T Consensus 265 ~a~~~~~~aDlvl~lG~~~~~~---~~~~--~~~~~~~i~Id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 333 (597)
T PRK08273 265 PSYELMRECDTLLMVGSSFPYS---EFLP--KEGQARGVQIDIDGRMLGLRYPMEVNLVGDAAETLRALLPLLE 333 (597)
T ss_pred HHHHHHHhCCEEEEeCCCCCHH---hcCC--CCCCCeEEEEeCCHHHcCCCCCCCceEecCHHHHHHHHHHhhh
Confidence 3445688999999999998422 2211 1125789999988765432 4568899999999999988653
No 44
>PRK06154 hypothetical protein; Provisional
Probab=91.06 E-value=0.31 Score=52.43 Aligned_cols=66 Identities=14% Similarity=0.146 Sum_probs=48.4
Q ss_pred HHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 016198 317 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 317 a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~ 386 (393)
+.+.+++||++|+||+++..+.... .. ..+.++|.||.++..... ..++.|.+|+.++|.+|++.+
T Consensus 274 ~~~~~~~aDlvL~lG~~l~~~~~~~---~~-~~~~~vI~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l 341 (565)
T PRK06154 274 VAHFLREADVLFGIGCSLTRSYYGL---PM-PEGKTIIHSTLDDADLNKDYPIDHGLVGDAALVLKQMIEEL 341 (565)
T ss_pred HHHHHHhCCEEEEECCCCcccccCc---cC-CCCCeEEEEECCHHHhccccCCCeeEEcCHHHHHHHHHHHh
Confidence 4456789999999999987532211 11 236788989888765433 467899999999999998865
No 45
>PRK11269 glyoxylate carboligase; Provisional
Probab=90.99 E-value=0.29 Score=52.78 Aligned_cols=69 Identities=14% Similarity=0.110 Sum_probs=49.2
Q ss_pred HHHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 016198 316 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 316 ~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~ 386 (393)
.+.+.+.++|++|+||+++.......+-.. ..+.++|.||.++..+.. ..++.|.+|+..+|.+|++.+
T Consensus 263 ~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~--~~~~~~i~Vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 333 (591)
T PRK11269 263 YGNATLLASDFVLGIGNRWANRHTGSVEVY--TKGRKFVHVDIEPTQIGRVFGPDLGIVSDAKAALELLVEVA 333 (591)
T ss_pred HHHHHHHhCCEEEEeCCCCCccccCchhhc--CCCCeEEEeeCCHHHhCCCCCCCeEEEeCHHHHHHHHHHHh
Confidence 345667899999999999865322111111 236789999988766433 457899999999999998865
No 46
>PRK08611 pyruvate oxidase; Provisional
Probab=90.81 E-value=0.47 Score=51.07 Aligned_cols=64 Identities=11% Similarity=0.152 Sum_probs=47.6
Q ss_pred HHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhCC
Q 016198 317 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 387 (393)
Q Consensus 317 a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~~ 387 (393)
+.+.++++|++|+||+++....+ ...+.++|.||.++..+.. ..++.|.+|+..+|..|.+.+.
T Consensus 261 a~~~l~~aDlvl~iG~~~~~~~~-------~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~ 326 (576)
T PRK08611 261 AYEAMQEADLLIMVGTNYPYVDY-------LPKKAKAIQIDTDPANIGKRYPVNVGLVGDAKKALHQLTENIK 326 (576)
T ss_pred HHHHHHhCCEEEEeCCCCCcccc-------CCCCCcEEEEeCCHHHcCCccCCCeeEecCHHHHHHHHHHhcc
Confidence 44567899999999999753221 1224689999988765543 4578899999999999988653
No 47
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=90.80 E-value=0.4 Score=51.08 Aligned_cols=67 Identities=15% Similarity=0.211 Sum_probs=48.5
Q ss_pred HHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 016198 317 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 317 a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~ 386 (393)
+.+.+++||++|++|+++..+....+. ...+.++|.||.++..... ..++.|.+|+.++|..|++.+
T Consensus 256 ~~~~~~~aDlvl~lG~~~~~~~~~~~~---~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 324 (539)
T TIGR02418 256 GDRLLKQADLVITIGYDPIEYEPRNWN---SENDATIVHIDVEPAQIDNNYQPDLELVGDIASTLDLLAERI 324 (539)
T ss_pred HHHHHHhCCEEEEecCcccccCccccC---cCCCCeEEEEeCChHHcCCccCCCeEEecCHHHHHHHHHHhh
Confidence 345678999999999997643321111 1224689999998876543 457889999999999998755
No 48
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=90.80 E-value=0.39 Score=51.47 Aligned_cols=68 Identities=16% Similarity=0.234 Sum_probs=49.2
Q ss_pred HHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 016198 317 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 317 a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~ 386 (393)
+.+.++++|++|+||+++........-.. ..+.++|.||.++..... ..++.|.+|+.++|.+|++.+
T Consensus 271 ~~~~l~~aDlvl~lG~~~~~~~~~~~~~~--~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 340 (564)
T PRK08155 271 TNYILQEADLLIVLGARFDDRAIGKTEQF--CPNAKIIHVDIDRAELGKIKQPHVAIQADVDDVLAQLLPLV 340 (564)
T ss_pred HHHHHHhCCEEEEECCCCCccccCCHhhc--CCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhh
Confidence 44567899999999999876432111111 235689999998876543 457899999999999998755
No 49
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=90.80 E-value=0.33 Score=51.98 Aligned_cols=69 Identities=13% Similarity=0.191 Sum_probs=48.6
Q ss_pred HHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhCC
Q 016198 317 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 387 (393)
Q Consensus 317 a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~~ 387 (393)
+.+.++++|++|+||+++........... ..+.++|.||.++..... ..++.|.+|+..+|++|++.+.
T Consensus 267 ~~~~l~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 337 (561)
T PRK06048 267 ANYAIQESDLIIAVGARFDDRVTGKLASF--APNAKIIHIDIDPAEISKNVKVDVPIVGDAKQVLKSLIKYVQ 337 (561)
T ss_pred HHHHHHhCCEEEEECCCCCccccCChhhc--CCCCeEEEEECCHHHhCCCCCCCeEEEeCHHHHHHHHHHhcc
Confidence 44567899999999999864221111111 235789999988754432 4678999999999999988664
No 50
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=90.75 E-value=0.34 Score=51.92 Aligned_cols=69 Identities=23% Similarity=0.235 Sum_probs=49.5
Q ss_pred HHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 016198 317 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 317 a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~ 386 (393)
+.+.+.+||++|+||+++...+....-. ....+.+++.||.++..... ..++.|.+|+..+|.+|++.+
T Consensus 267 ~~~~~~~aDlvl~lG~~~~~~~~~~~~~-~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 337 (572)
T PRK06456 267 ASMAALESDAMLVVGARFSDRTFTSYDE-MVETRKKFIMVNIDPTDGEKAIKVDVGIYGNAKIILRELIKAI 337 (572)
T ss_pred HHHHHHhCCEEEEECCCCchhhcccccc-ccCCCCeEEEEeCChHHhCCccCCCeEEecCHHHHHHHHHHHh
Confidence 4456779999999999987655322211 11225689999988766543 467889999999999998755
No 51
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=90.64 E-value=0.29 Score=52.60 Aligned_cols=69 Identities=12% Similarity=0.123 Sum_probs=49.0
Q ss_pred HHHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC-cccEEEECcHHHHHHHHHHhC
Q 016198 316 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD-LTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 316 ~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~-~~~l~I~~d~~~vL~~L~~~~ 386 (393)
.+.+.++++|++|+||+.+.......+... ..+.++|.||.++..... ..++.|.+|+..+|++|++.+
T Consensus 277 ~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l 346 (578)
T PRK06112 277 HLRDLVREADVVLLVGTRTNQNGTDSWSLY--PEQAQYIHIDVDGEEVGRNYEALRLVGDARLTLAALTDAL 346 (578)
T ss_pred HHHHHHHhCCEEEEECCCCCcccccccccc--CCCCeEEEEECChHHhCccccceEEEeCHHHHHHHHHHhh
Confidence 455678899999999999875443222111 235789999988754322 236889999999999998755
No 52
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=90.42 E-value=0.44 Score=51.37 Aligned_cols=63 Identities=19% Similarity=0.277 Sum_probs=47.8
Q ss_pred HHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhCC
Q 016198 317 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 387 (393)
Q Consensus 317 a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~~ 387 (393)
+.+.++++|++|+||+++... .+ . .+.++|.||.++..+.. ..++.|.+|+..+|.+|++.+.
T Consensus 259 ~~~~l~~aDlvl~lG~~~~~~---~~---~--~~~~~I~vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~L~ 323 (578)
T PRK06546 259 AHEAMHEADLLILLGTDFPYD---QF---L--PDVRTAQVDIDPEHLGRRTRVDLAVHGDVAETIRALLPLVK 323 (578)
T ss_pred HHHHHHhCCEEEEEcCCCChh---hc---C--CCCcEEEEeCCHHHhCCCCCCCeEEEcCHHHHHHHHHHhhc
Confidence 445678999999999987521 11 1 24679999988866543 4678999999999999988764
No 53
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=90.36 E-value=0.3 Score=52.65 Aligned_cols=69 Identities=20% Similarity=0.256 Sum_probs=49.3
Q ss_pred HHHHHhhCCeEEEeccCcchhhH---HHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhCC
Q 016198 317 AMEAAKECDAFLVLGSSLMTMSA---YRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 387 (393)
Q Consensus 317 a~~~~~~aDllLVvGTSl~V~p~---~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~~ 387 (393)
+.+.+++||++|+||+++.-... +... ....+.++|.||.++..+.. ..++.|.+|+..+|++|++.+.
T Consensus 260 ~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~--~~~~~~~iI~Id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 333 (588)
T PRK07525 260 AMELIAKADVVLALGTRLNPFGTLPQYGID--YWPKDAKIIQVDINPDRIGLTKKVSVGICGDAKAVARELLARLA 333 (588)
T ss_pred HHHHHHhCCEEEEECCCCchhhcccccccc--cCCCCCeEEEEECCHHHhCCCCCCCceEecCHHHHHHHHHHhhh
Confidence 44667899999999999864321 1110 11236889999988765432 4678899999999999988663
No 54
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=90.35 E-value=0.43 Score=51.54 Aligned_cols=70 Identities=13% Similarity=0.220 Sum_probs=49.4
Q ss_pred HHHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 016198 316 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 316 ~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~ 386 (393)
.+.+.++++|++|+||+++..+.....-. ....++++|.||.++..+.. ..++.|.+|+.++|.+|++.+
T Consensus 280 ~a~~~~~~aDlvl~lG~~~~~~~~~~~~~-~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 351 (587)
T PRK06965 280 EANMAMQHCDVLIAIGARFDDRVIGNPAH-FASRPRKIIHIDIDPSSISKRVKVDIPIVGDVKEVLKELIEQL 351 (587)
T ss_pred HHHHHHHhCCEEEEECCCCcccccCChhh-cCCCCceEEEEeCCHHHhCCcCCCCeEEecCHHHHHHHHHHhh
Confidence 34567789999999999986543211101 11225789999988765433 458899999999999998755
No 55
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=90.09 E-value=0.36 Score=51.50 Aligned_cols=68 Identities=15% Similarity=0.273 Sum_probs=47.8
Q ss_pred HHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 016198 317 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 317 a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~ 386 (393)
+.+.+++||++|++|+++...-...+-.. ..+.++|.||.++..+.. ..++.|.+|+..+|.+|.+.+
T Consensus 256 ~~~~l~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~l~~~~ 325 (548)
T PRK08978 256 ANLAVQECDLLIAVGARFDDRVTGKLNTF--APHAKVIHLDIDPAEINKLRQAHVALQGDLNALLPALQQPL 325 (548)
T ss_pred HHHHHHhCCEEEEEcCCCCccccCCcccc--CCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhc
Confidence 44567899999999999865322111111 235679999988765543 468899999999999997643
No 56
>PRK08266 hypothetical protein; Provisional
Probab=89.96 E-value=0.29 Score=52.08 Aligned_cols=68 Identities=21% Similarity=0.172 Sum_probs=48.7
Q ss_pred HHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCC-CcccEEEECcHHHHHHHHHHhCC
Q 016198 317 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRAD-DLTTLKISARLGEILPRVLDVGS 387 (393)
Q Consensus 317 a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d-~~~~l~I~~d~~~vL~~L~~~~~ 387 (393)
+.+.+.++|++|++|+++... ...+. ....+.++|.||.++.... ...++.|.+|+..+|++|++.+.
T Consensus 257 ~~~~~~~aDlvl~lG~~~~~~-~~~~~--~~~~~~~~i~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 325 (542)
T PRK08266 257 AYELWPQTDVVIGIGSRLELP-TFRWP--WRPDGLKVIRIDIDPTEMRRLKPDVAIVADAKAGTAALLDALS 325 (542)
T ss_pred HHHHHHhCCEEEEeCCCcCcc-ccccc--ccCCCCcEEEEECCHHHhCCcCCCceEecCHHHHHHHHHHhhh
Confidence 445678999999999998765 22211 1123568999988765433 24578999999999999988653
No 57
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=89.81 E-value=0.34 Score=52.18 Aligned_cols=69 Identities=19% Similarity=0.211 Sum_probs=48.9
Q ss_pred HHHHHhhCCeEEEeccCcchhhH---HHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhCC
Q 016198 317 AMEAAKECDAFLVLGSSLMTMSA---YRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 387 (393)
Q Consensus 317 a~~~~~~aDllLVvGTSl~V~p~---~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~~ 387 (393)
+.+.++++|++|+||+.+..+.. +... ....++++|.||.++..+.. ..++.|.+|+..+|.+|++.+.
T Consensus 256 ~~~~l~~aDlil~lG~~~~~~~~~~~~~~~--~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 329 (579)
T TIGR03457 256 AMKLISDADVVLALGTRLGPFGTLPQYGID--YWPKNAKIIQVDANAKMIGLVKKVTVGICGDAKAAAAEILQRLA 329 (579)
T ss_pred HHHHHHhCCEEEEECCCCcccccccccccc--cCCCCCeEEEEeCCHHHhCCCCCCCeeEecCHHHHHHHHHHhhh
Confidence 45567899999999999863211 1110 11236789999988765433 4678899999999999988663
No 58
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=89.63 E-value=0.42 Score=51.51 Aligned_cols=69 Identities=12% Similarity=0.170 Sum_probs=48.5
Q ss_pred HHHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 016198 316 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 316 ~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~ 386 (393)
.+.+.+.++|++|+||+.+........... ..+.++|.||.++..... ..++.|.+|+..+|.+|++.+
T Consensus 262 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l 332 (586)
T PRK06276 262 AANYSVTESDVLIAIGCRFSDRTTGDISSF--APNAKIIHIDIDPAEIGKNVRVDVPIVGDAKNVLRDLLAEL 332 (586)
T ss_pred HHHHHHHcCCEEEEECCCCCccccCCcccc--CCCCeEEEEECCHHHhCCcCCCceEEecCHHHHHHHHHHhh
Confidence 445667899999999999854321111111 235778999988765443 357889999999999998865
No 59
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=89.52 E-value=0.44 Score=51.24 Aligned_cols=67 Identities=18% Similarity=0.151 Sum_probs=48.0
Q ss_pred HHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCC-----CCcccEEEECcHHHHHHHHHHhCC
Q 016198 317 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRA-----DDLTTLKISARLGEILPRVLDVGS 387 (393)
Q Consensus 317 a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~-----d~~~~l~I~~d~~~vL~~L~~~~~ 387 (393)
+.+.++++|++|+||+.+...+... . ...+.++|.||.++..+ ....++.|.+|+..+|.+|++.+.
T Consensus 273 ~~~~~~~aDlvl~lG~~l~~~~~~~--~--~~~~~~vi~Id~d~~~~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 344 (569)
T PRK08327 273 PRADLAEADLVLVVDSDVPWIPKKI--R--PDADARVIQIDVDPLKSRIPLWGFPCDLCIQADTSTALDQLEERLK 344 (569)
T ss_pred cchhhhhCCEEEEeCCCCCCccccc--c--CCCCCeEEEEeCChhhhcccccCcceeEEEecCHHHHHHHHHHHHh
Confidence 4456789999999999875432211 1 12357899999887543 224578899999999999988664
No 60
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=89.22 E-value=0.48 Score=50.72 Aligned_cols=70 Identities=14% Similarity=0.125 Sum_probs=48.7
Q ss_pred HHHHHhhCCeEEEeccCcchhhHHHHHHHH-HhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 016198 317 AMEAAKECDAFLVLGSSLMTMSAYRLVRAA-HEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 317 a~~~~~~aDllLVvGTSl~V~p~~~lv~~a-~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~ 386 (393)
+.+.++++|++|+||+++...+...+.... .....++|.||.++..+.. ..++.|.+|+..+|.+|++..
T Consensus 264 ~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~~~i~vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~~ 336 (557)
T PRK08199 264 LAARIREADLVLAVGTRLGEVTTQGYTLLDIPVPRQTLVHVHPDAEELGRVYRPDLAIVADPAAFAAALAALE 336 (557)
T ss_pred HHHHHHhCCEEEEeCCCCccccccccccccccCCCCeEEEEeCCHHHhCCccCCCeEEecCHHHHHHHHHhcc
Confidence 455678999999999998654432111111 0125679999988765443 457899999999999998753
No 61
>PRK05858 hypothetical protein; Provisional
Probab=89.20 E-value=0.69 Score=49.36 Aligned_cols=68 Identities=16% Similarity=0.199 Sum_probs=49.7
Q ss_pred HHHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhCC
Q 016198 316 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 387 (393)
Q Consensus 316 ~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~~ 387 (393)
.+.+.++++|++|+||+++........ . ..+.++|.|+.++..... ..++.|.+|+..+|++|.+.+.
T Consensus 255 ~~~~~l~~aD~vl~vG~~~~~~~~~~~--~--~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 324 (542)
T PRK05858 255 ARGKALGEADVVLVVGVPMDFRLGFGV--F--GGTAQLVHVDDAPPQRAHHRPVAAGLYGDLSAILSALAGAGG 324 (542)
T ss_pred HHHHHHHhCCEEEEECCCCcccccccc--c--CCCCEEEEECCCHHHhcCCCCCceEEeCCHHHHHHHHHHhcc
Confidence 345678899999999998754332221 1 225789999988765443 4678999999999999987653
No 62
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=88.90 E-value=0.58 Score=50.29 Aligned_cols=68 Identities=21% Similarity=0.240 Sum_probs=47.4
Q ss_pred HHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 016198 317 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 317 a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~ 386 (393)
+.+.++++|++|++|+++..+........ ..+.++|.||.++..+.. ..++.|.+|+..+|.+|++.+
T Consensus 275 ~~~~l~~aDlvL~lG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~ig~~~~~~~~i~~D~~~~l~~L~~~~ 344 (571)
T PRK07710 275 ANMALYECDLLINIGARFDDRVTGNLAYF--AKEATVAHIDIDPAEIGKNVPTEIPIVADAKQALQVLLQQE 344 (571)
T ss_pred HHHHHHhCCEEEEeCCCCCccccCchhhc--CCCCeEEEEECCHHHhcCcCCCCeEEecCHHHHHHHHHHhh
Confidence 44567899999999999865322111111 125678889988755432 357899999999999998754
No 63
>PRK08617 acetolactate synthase; Reviewed
Probab=88.06 E-value=0.74 Score=49.17 Aligned_cols=67 Identities=15% Similarity=0.167 Sum_probs=47.9
Q ss_pred HHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 016198 317 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 317 a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~ 386 (393)
+.+.++++|++|++|+++..+....+. ...+.++|.||.++..++. ..++.|.+|+..+|..|++.+
T Consensus 262 ~~~~~~~aDlvl~lG~~~~~~~~~~~~---~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 330 (552)
T PRK08617 262 GDELLKKADLVITIGYDPIEYEPRNWN---SEGDATIIHIDVLPAEIDNYYQPERELIGDIAATLDLLAEKL 330 (552)
T ss_pred HHHHHHhCCEEEEecCccccccccccc---cCCCCcEEEEeCChHHhCCccCCCeEEeCCHHHHHHHHHHhh
Confidence 335678999999999987543221110 1125689999998866544 457889999999999998754
No 64
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=87.95 E-value=0.96 Score=48.61 Aligned_cols=62 Identities=16% Similarity=0.279 Sum_probs=46.6
Q ss_pred HHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 016198 318 MEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 318 ~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~ 386 (393)
.+.++++|++|+||+++.... + . ..+.++|.||..+..+.. ..++.|.+|+..+|.+|++.+
T Consensus 260 ~~~~~~aDlvl~lG~~~~~~~---~---~-~~~~~ii~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 323 (574)
T PRK09124 260 YHAMMNCDTLLMLGTDFPYRQ---F---Y-PTDAKIIQIDINPGSLGRRSPVDLGLVGDVKATLAALLPLL 323 (574)
T ss_pred HHHHHhCCEEEEECCCCCccc---c---c-CCCCcEEEeeCCHHHhCCCCCCCeEEEccHHHHHHHHHHhh
Confidence 456789999999999885321 1 1 224689999988766543 457899999999999998755
No 65
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=87.63 E-value=0.76 Score=49.15 Aligned_cols=68 Identities=15% Similarity=0.195 Sum_probs=47.5
Q ss_pred HHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCC--CcccEEEECcHHHHHHHHHHhC
Q 016198 318 MEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRAD--DLTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 318 ~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d--~~~~l~I~~d~~~vL~~L~~~~ 386 (393)
.+.+++||++|+||+.+.-+......... ..+.++|.|+.++.... ...++.|.+|+.++|.+|++.+
T Consensus 260 ~~~~~~aDlvl~lG~~~~~~~~~~~~~~~-~~~~~vI~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 329 (554)
T TIGR03254 260 SFALAEADVVMLVGARLNWLLSHGKGKLW-GEDAKFIQVDIEPTEMDSNRPIAAPVVGDIGSVVQALLSAA 329 (554)
T ss_pred HHHHhcCCEEEEECCCCchhhccCchhhc-CCCCcEEEcCCCHHHhCCCcCCceEEecCHHHHHHHHHHHh
Confidence 35688999999999998643321110011 23678888988765433 3457889999999999998865
No 66
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=87.54 E-value=0.4 Score=42.95 Aligned_cols=11 Identities=36% Similarity=1.093 Sum_probs=9.5
Q ss_pred CCCcCCCCCCc
Q 016198 297 HIPTCQKCNGV 307 (393)
Q Consensus 297 ~iP~Cp~CGg~ 307 (393)
.+|.||+||+.
T Consensus 129 ~l~~Cp~C~~~ 139 (146)
T PF07295_consen 129 RLPPCPKCGHT 139 (146)
T ss_pred cCCCCCCCCCC
Confidence 58999999973
No 67
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=87.26 E-value=0.94 Score=48.79 Aligned_cols=67 Identities=16% Similarity=0.175 Sum_probs=46.4
Q ss_pred HHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhCC
Q 016198 317 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 387 (393)
Q Consensus 317 a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~~ 387 (393)
+.+.++++|++|+||+++...... ... ..+..+|.||.++..... ..++.|.+|+..+|.+|++.+.
T Consensus 258 ~~~~l~~aDlvl~vG~~~~~~~~~---~~~-~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 326 (575)
T TIGR02720 258 ANEALFQADLVLFVGNNYPFAEVS---KAF-KNTKYFIQIDIDPAKLGKRHHTDIAVLADAKKALAAILAQVE 326 (575)
T ss_pred HHHHHHhCCEEEEeCCCCCccccc---ccc-CCCceEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHHHHhcc
Confidence 345678999999999987533221 111 124455889887654433 4578899999999999988663
No 68
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=87.24 E-value=0.78 Score=49.26 Aligned_cols=68 Identities=13% Similarity=0.159 Sum_probs=47.3
Q ss_pred HHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 016198 318 MEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 318 ~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~ 386 (393)
...+++||++|+||+++.-+......... ..+.++|.|+.++..... ..++.|.+|+..+|.+|++.+
T Consensus 267 ~~~l~~aDlvl~lG~~~~~~~~~~~~~~~-~~~~~ii~Id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l 336 (569)
T PRK09259 267 SLALANADVVLLVGARLNWLLSHGKGKTW-GADKKFIQIDIEPQEIDSNRPIAAPVVGDIGSVMQALLAGL 336 (569)
T ss_pred HHHHhcCCEEEEeCCCCchhcccCchhcc-CCCCcEEEecCChHHhcCCccCceeEecCHHHHHHHHHHHh
Confidence 34578999999999998543211110111 136789999887765433 457889999999999998865
No 69
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=87.07 E-value=0.42 Score=32.69 Aligned_cols=13 Identities=46% Similarity=1.063 Sum_probs=10.3
Q ss_pred ceeecCCCCcccc
Q 016198 230 YTVVCLDCGFSFC 242 (393)
Q Consensus 230 ~~~~C~~C~~~~~ 242 (393)
+..+|.+|++.+.
T Consensus 4 Y~y~C~~Cg~~fe 16 (41)
T smart00834 4 YEYRCEDCGHTFE 16 (41)
T ss_pred EEEEcCCCCCEEE
Confidence 5679999998764
No 70
>PRK11032 hypothetical protein; Provisional
Probab=86.25 E-value=0.49 Score=43.02 Aligned_cols=10 Identities=40% Similarity=1.069 Sum_probs=9.1
Q ss_pred CCCcCCCCCC
Q 016198 297 HIPTCQKCNG 306 (393)
Q Consensus 297 ~iP~Cp~CGg 306 (393)
.||.||+||+
T Consensus 141 ~i~pCp~C~~ 150 (160)
T PRK11032 141 VLPLCPKCGH 150 (160)
T ss_pred cCCCCCCCCC
Confidence 6899999997
No 71
>PRK07064 hypothetical protein; Provisional
Probab=86.21 E-value=1 Score=47.88 Aligned_cols=68 Identities=19% Similarity=0.221 Sum_probs=48.4
Q ss_pred HHHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCC--CcccEEEECcHHHHHHHHHHhC
Q 016198 316 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRAD--DLTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 316 ~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d--~~~~l~I~~d~~~vL~~L~~~~ 386 (393)
.+.+.++++|++|+||+.+......... . ....+++.||.++.... ...++.|.+|+..+|.+|++.+
T Consensus 257 ~~~~~~~~aDlvl~iG~~~~~~~~~~~~--~-~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l 326 (544)
T PRK07064 257 AVEALYKTCDLLLVVGSRLRGNETLKYS--L-ALPRPLIRVDADAAADGRGYPNDLFVHGDAARVLARLADRL 326 (544)
T ss_pred HHHHHHHhCCEEEEecCCCCcccccccc--c-CCCCceEEEeCCHHHhCCcCCCCceEecCHHHHHHHHHHhh
Confidence 3456778999999999998754432211 1 12357889988765443 2467889999999999998765
No 72
>PLN02573 pyruvate decarboxylase
Probab=85.37 E-value=0.67 Score=50.03 Aligned_cols=67 Identities=13% Similarity=0.106 Sum_probs=44.9
Q ss_pred HHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCCcccEEEECcHHHHHHHHHHhC
Q 016198 317 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 317 a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~~d~~~vL~~L~~~~ 386 (393)
+.+.++++|++|+||++|........... ..+.++|.||.++..+....++.+. ++..+|..|++.+
T Consensus 285 ~~~~~~~aDlvl~lG~~l~~~~~~~~~~~--~~~~~~I~id~d~~~i~~~~~~~~~-~~~~~l~~L~~~l 351 (578)
T PLN02573 285 CAEIVESADAYLFAGPIFNDYSSVGYSLL--LKKEKAIIVQPDRVTIGNGPAFGCV-LMKDFLEALAKRV 351 (578)
T ss_pred HHHHHHhCCEEEEECCccCCccccccccc--CCCCcEEEEeCCEEEECCcceECCc-CHHHHHHHHHHHh
Confidence 44567899999999999865433211111 2357899999988765543344444 6888899888765
No 73
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=85.12 E-value=1.8 Score=45.90 Aligned_cols=54 Identities=17% Similarity=0.306 Sum_probs=42.6
Q ss_pred HHHhhCCeEEEeccCcch-h-hHHHHHHHHHhCCCeEEEECCCCCCCCCcccEEEE
Q 016198 319 EAAKECDAFLVLGSSLMT-M-SAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKIS 372 (393)
Q Consensus 319 ~~~~~aDllLVvGTSl~V-~-p~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~ 372 (393)
+.+.++|++|++|+.... . ...+.+..++++|+++|.|++..+.....+|.+|.
T Consensus 153 ~d~~~ad~il~~G~Np~~s~p~~~~~~~~a~~~GaklivvDPr~t~ta~~Ad~~l~ 208 (501)
T cd02766 153 EDMVNADLIVIWGINPAATNIHLMRIIQEARKRGAKVVVIDPYRTATAARADLHIQ 208 (501)
T ss_pred HHHhcCCEEEEECCChhhhchhHHHHHHHHHHCCCEEEEECCCCCccHHHhCeeec
Confidence 457899999999987654 2 33455666888999999999999988777887654
No 74
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=83.78 E-value=3.9 Score=40.31 Aligned_cols=14 Identities=36% Similarity=0.235 Sum_probs=7.0
Q ss_pred hCCCeEEEECCCCC
Q 016198 348 EAGSTIAIVNVGET 361 (393)
Q Consensus 348 ~~ga~li~IN~~~t 361 (393)
++|-++|.|=..||
T Consensus 193 ea~lpyIsVLt~PT 206 (294)
T COG0777 193 EAGLPYISVLTDPT 206 (294)
T ss_pred hcCCceEEEecCCC
Confidence 34555555544443
No 75
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=83.75 E-value=2.2 Score=44.55 Aligned_cols=54 Identities=13% Similarity=0.191 Sum_probs=41.0
Q ss_pred HHHhhCCeEEEeccCcch-h-hHHHHHHHHHhCCCeEEEECCCCCCCCCcccEEEE
Q 016198 319 EAAKECDAFLVLGSSLMT-M-SAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKIS 372 (393)
Q Consensus 319 ~~~~~aDllLVvGTSl~V-~-p~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~ 372 (393)
+.+.++|++|++|+...+ . .....+..++++|+++|.||+..+.....+|..|.
T Consensus 166 ~d~~~ad~il~~G~N~~~~~~~~~~~l~~ar~~GaklividPr~s~ta~~Ad~~l~ 221 (461)
T cd02750 166 ADWYNADYIIMWGSNVPVTRTPDAHFLTEARYNGAKVVVVSPDYSPSAKHADLWVP 221 (461)
T ss_pred hHHhcCcEEEEECCChHHccCchHHHHHHHHHCCCEEEEEcCCCCcchhhcCEEec
Confidence 356789999999987654 2 22334445788899999999999888777887654
No 76
>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=83.20 E-value=2.3 Score=45.71 Aligned_cols=54 Identities=11% Similarity=0.199 Sum_probs=42.3
Q ss_pred HHHhhCCeEEEeccCcch-h-hHHHHHHHHHhCCCeEEEECCCCCCCCCcccEEEE
Q 016198 319 EAAKECDAFLVLGSSLMT-M-SAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKIS 372 (393)
Q Consensus 319 ~~~~~aDllLVvGTSl~V-~-p~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~ 372 (393)
+.+.++|++|++|+...+ . ...+.+..++++|+++|.|++..+.....+|..|.
T Consensus 155 ~D~~~ad~il~~G~Np~~s~~~~~~~~~~a~~~GakliviDPr~s~ta~~Ad~~l~ 210 (567)
T cd02765 155 TDWVNAKTIIIWGSNILETQFQDAEFFLDARENGAKIVVIDPVYSTTAAKADQWVP 210 (567)
T ss_pred hHHhcCcEEEEECCChHHccchhHHHHHHHHHcCCeEEEECCCCCcchhhcCEEec
Confidence 346799999999998654 3 34555666888999999999999888777777654
No 77
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=83.07 E-value=1 Score=47.83 Aligned_cols=72 Identities=15% Similarity=0.083 Sum_probs=47.6
Q ss_pred HHHHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC-cccEEEECcHHHHHHHHHHhCC
Q 016198 315 DKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD-LTTLKISARLGEILPRVLDVGS 387 (393)
Q Consensus 315 ~~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~-~~~l~I~~d~~~vL~~L~~~~~ 387 (393)
..+.+.++++|++|++|+++..+......... ..+.++|.||.++..... ..++.|.+|+..+|.+|++.++
T Consensus 264 ~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~-~~~~~~i~id~d~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 336 (530)
T PRK07092 264 EKISALLDGHDLVLVIGAPVFTYHVEGPGPHL-PEGAELVQLTDDPGEAAWAPMGDAIVGDIRLALRDLLALLP 336 (530)
T ss_pred HHHHHHHhhCCEEEEECCcccccccCCccccC-CCCCeEEEEeCChHHhcCCCCCCcccCCHHHHHHHHHHhhc
Confidence 34456788999999999874222110110011 235788899988755432 3567889999999999998764
No 78
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=82.94 E-value=2.6 Score=45.05 Aligned_cols=59 Identities=17% Similarity=0.296 Sum_probs=43.4
Q ss_pred HHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHH
Q 016198 317 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRV 382 (393)
Q Consensus 317 a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L 382 (393)
+.+.++++|++|++|+++.... + ...+.++|.||.++..... ..++.|.+|+..+|..+
T Consensus 253 ~~~~l~~aDlvl~lG~~~~~~~---~----~~~~~~ii~id~d~~~~~~~~~~~~~i~~d~~~~l~~~ 313 (549)
T PRK06457 253 SIEAMDKADLLIMLGTSFPYVN---F----LNKSAKVIQVDIDNSNIGKRLDVDLSYPIPVAEFLNID 313 (549)
T ss_pred HHHHHHhCCEEEEECCCCChhh---c----CCCCCcEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHH
Confidence 4456789999999999985322 1 1225789999998766543 46789999999999543
No 79
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=82.82 E-value=0.91 Score=31.85 Aligned_cols=14 Identities=36% Similarity=0.982 Sum_probs=10.9
Q ss_pred cceeecCCCCcccc
Q 016198 229 VYTVVCLDCGFSFC 242 (393)
Q Consensus 229 ~~~~~C~~C~~~~~ 242 (393)
++..+|.+|+..+.
T Consensus 3 ~Yey~C~~Cg~~fe 16 (42)
T PF09723_consen 3 IYEYRCEECGHEFE 16 (42)
T ss_pred CEEEEeCCCCCEEE
Confidence 45789999998764
No 80
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=82.69 E-value=1.9 Score=39.77 Aligned_cols=13 Identities=23% Similarity=0.600 Sum_probs=11.8
Q ss_pred CcCCCCCCccCCh
Q 016198 299 PTCQKCNGVLKPD 311 (393)
Q Consensus 299 P~Cp~CGg~LrP~ 311 (393)
.+||.||+.|...
T Consensus 137 F~Cp~Cg~~L~~~ 149 (178)
T PRK06266 137 FRCPQCGEMLEEY 149 (178)
T ss_pred CcCCCCCCCCeec
Confidence 5899999999987
No 81
>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1). The NADH-Q-OR is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The atomic structure of complex I is not known and the mechanisms of electron transfer and proton pumping are not established. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Escherichia coli, this subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the 'minimal' fun
Probab=81.79 E-value=5.5 Score=40.12 Aligned_cols=55 Identities=25% Similarity=0.367 Sum_probs=38.1
Q ss_pred HHHhhCCeEEEeccCcch-hh-HHHHHHHHHh-CCCeEEEECCCCCCCCCcccEEEECcH
Q 016198 319 EAAKECDAFLVLGSSLMT-MS-AYRLVRAAHE-AGSTIAIVNVGETRADDLTTLKISARL 375 (393)
Q Consensus 319 ~~~~~aDllLVvGTSl~V-~p-~~~lv~~a~~-~ga~li~IN~~~t~~d~~~~l~I~~d~ 375 (393)
..++++|++|++|+.... .| ....+..+.+ +|++++.|++..+.. .++..+.-+-
T Consensus 144 ~di~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~g~kli~idp~~t~~--~ad~~~~~~p 201 (386)
T cd02768 144 AEIEEADAVLLIGSNLRKEAPLLNARLRKAVKKKGAKIAVIGPKDTDL--IADLTYPVSP 201 (386)
T ss_pred HHHhhCCEEEEEcCCcchhchHHHHHHHHHHHcCCCeEEEECCCcccc--ccceEEEcCC
Confidence 356799999999987654 44 2333444544 499999999988777 5666654333
No 82
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=81.67 E-value=0.72 Score=49.18 Aligned_cols=68 Identities=15% Similarity=0.148 Sum_probs=44.3
Q ss_pred HHHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 016198 316 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 316 ~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~ 386 (393)
.+.+.+++||++|+||++|............. ..++|.||........ ..++.| +|+..+|.+|++.+
T Consensus 265 ~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~--~~~~I~id~~~~~~~~~~~~~~~i-~D~~~~l~~l~~~l 334 (539)
T TIGR03393 265 AVKEAIEGADAVICVGVRFTDTITAGFTHQLT--PEQTIDVQPHAARVGNVWFTGIPM-NDAIETLVELCEHA 334 (539)
T ss_pred HHHHHHhhCCEEEEECCcccccccceeeccCC--cccEEEEcCCeEEECceEeCCcCH-HHHHHHHHHHhhhc
Confidence 45566789999999999986533211111111 2468888887655432 234456 89999999998765
No 83
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=81.27 E-value=2.2 Score=38.54 Aligned_cols=13 Identities=31% Similarity=0.618 Sum_probs=11.8
Q ss_pred CcCCCCCCccCCh
Q 016198 299 PTCQKCNGVLKPD 311 (393)
Q Consensus 299 P~Cp~CGg~LrP~ 311 (393)
.+||.||+.|...
T Consensus 129 F~Cp~Cg~~L~~~ 141 (158)
T TIGR00373 129 FTCPRCGAMLDYL 141 (158)
T ss_pred CcCCCCCCEeeec
Confidence 5899999999987
No 84
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=80.95 E-value=3 Score=44.66 Aligned_cols=62 Identities=19% Similarity=0.239 Sum_probs=44.4
Q ss_pred HHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHH
Q 016198 317 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPR 381 (393)
Q Consensus 317 a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~ 381 (393)
+.+.++++|++|+||+.+.......+.. ....++|.||.++..... ..++.|.+|+.++|..
T Consensus 280 ~~~~l~~aD~vl~vG~~l~~~~~~~~~~---~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~ 343 (568)
T PRK07449 280 AAEELLQPDIVIQFGSPPTSKRLLQWLA---DCEPEYWVVDPGPGRLDPAHHATRRLTASVATWLEA 343 (568)
T ss_pred hhhhcCCCCEEEEeCCCCCchhHHHHHh---cCCCCEEEECCCCCcCCCCCCceEEEEEcHHHHHHh
Confidence 4456789999999999985443222211 123489999998876654 4578899999999887
No 85
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=80.87 E-value=3.4 Score=43.53 Aligned_cols=54 Identities=20% Similarity=0.365 Sum_probs=41.0
Q ss_pred HHHhhCCeEEEeccCcch-hh-HHHHHHHHHhCCCeEEEECCCCCCCCCcccEEEE
Q 016198 319 EAAKECDAFLVLGSSLMT-MS-AYRLVRAAHEAGSTIAIVNVGETRADDLTTLKIS 372 (393)
Q Consensus 319 ~~~~~aDllLVvGTSl~V-~p-~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~ 372 (393)
+.+.++|++|++|+.... .| ....+..++++|+++|.|++..+.....+|..|.
T Consensus 152 ~d~~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~k~i~Idp~~s~ta~~Ad~~l~ 207 (512)
T cd02753 152 ADIEEADVILVIGSNTTEAHPVIARRIKRAKRNGAKLIVADPRRTELARFADLHLQ 207 (512)
T ss_pred HHHHhCCEEEEECCChhhhhHHHHHHHHHHHHCCCeEEEEcCCCccchHhhCeeeC
Confidence 346799999999987654 22 3344556778899999999998887777787764
No 86
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=80.65 E-value=5 Score=40.03 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHhCCCeEEEECCCC
Q 016198 337 MSAYRLVRAAHEAGSTIAIVNVGE 360 (393)
Q Consensus 337 ~p~~~lv~~a~~~ga~li~IN~~~ 360 (393)
....++.+.|.+.+.|+|.+.-..
T Consensus 155 eKi~ra~e~A~~~rlPlV~l~~SG 178 (296)
T CHL00174 155 EKITRLIEYATNESLPLIIVCASG 178 (296)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCC
Confidence 455677777777888888777554
No 87
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=80.47 E-value=3.1 Score=43.64 Aligned_cols=53 Identities=13% Similarity=0.129 Sum_probs=41.5
Q ss_pred HHhhCCeEEEeccCcch-hh--HHHHHHHHHhCCCeEEEECCCCCCCCCcccEEEE
Q 016198 320 AAKECDAFLVLGSSLMT-MS--AYRLVRAAHEAGSTIAIVNVGETRADDLTTLKIS 372 (393)
Q Consensus 320 ~~~~aDllLVvGTSl~V-~p--~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~ 372 (393)
.+.++|++|++|+.... .| ....+..++++|+++|.|++..+.....+|.+|.
T Consensus 157 d~~~ad~Il~~G~n~~~~~~~~~~~~~~~ar~~g~klividpr~s~ta~~Ad~~l~ 212 (477)
T cd02759 157 DWENPECIVLWGKNPLNSNLDLQGHWLVAAMKRGAKLIVVDPRLTWLAARADLWLP 212 (477)
T ss_pred hhhcCCEEEEEccChhhhCcHHHHHHHHHHHHCCCEEEEECCCCChhhHhhCeeec
Confidence 46799999999987655 33 3445556777899999999999888777887764
No 88
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=79.49 E-value=3.9 Score=45.03 Aligned_cols=54 Identities=22% Similarity=0.381 Sum_probs=41.3
Q ss_pred HHHhhCCeEEEeccCcch-hhH-HHHHHHHHhC-CCeEEEECCCCCCCCCcccEEEE
Q 016198 319 EAAKECDAFLVLGSSLMT-MSA-YRLVRAAHEA-GSTIAIVNVGETRADDLTTLKIS 372 (393)
Q Consensus 319 ~~~~~aDllLVvGTSl~V-~p~-~~lv~~a~~~-ga~li~IN~~~t~~d~~~~l~I~ 372 (393)
..++++|++|++|+.... .|. ...+..|+++ |+++|.|++..++....+|+.+.
T Consensus 165 ~Di~nAd~Ili~GsNpae~hPv~~~~i~~Ak~~~GaklIvVDPR~t~Ta~~AD~~l~ 221 (649)
T cd02752 165 NDIKNADVILVMGGNPAEAHPVSFKWILEAKEKNGAKLIVVDPRFTRTAAKADLYVP 221 (649)
T ss_pred HHHhcCCEEEEECCChHHhCcHHHHHHHHHHHcCCCeEEEEcCCCCchhHhcCEeeC
Confidence 346889999999998654 553 3445556665 99999999999888778887754
No 89
>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional
Probab=79.01 E-value=4.5 Score=40.62 Aligned_cols=59 Identities=14% Similarity=0.179 Sum_probs=47.1
Q ss_pred hCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCC-CCCCcccEEEECcHHHHHHHHHHhC
Q 016198 323 ECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGET-RADDLTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 323 ~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t-~~d~~~~l~I~~d~~~vL~~L~~~~ 386 (393)
..+|.|.+|.|-.++=...+ +.-..+|-||.++. ++-+.+|+.|-+|+-++||+|.+.+
T Consensus 251 ~P~lYiA~GISGAiQH~aGm-----~~s~~IVAIN~Dp~APIF~~ADygiVgD~~~vlP~L~e~l 310 (312)
T PRK11916 251 KSDLYLTLGISGQIQHMVGG-----NGAKVIVAINKDKNAPIFNYADYGLVGDIYKVVPALISQL 310 (312)
T ss_pred CccEEEEeccccHHHHHhhc-----ccCCEEEEECCCCCCCchhhCCeeEeeeHHHHHHHHHHHh
Confidence 45799999999877655554 22345899999975 5778999999999999999999875
No 90
>PRK14873 primosome assembly protein PriA; Provisional
Probab=78.84 E-value=7.2 Score=43.15 Aligned_cols=43 Identities=21% Similarity=0.213 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCCccEEEEccCcchhhhcCCCc-eeeecccceeecCCCCc
Q 016198 189 PAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGF 239 (393)
Q Consensus 189 ~~H~~La~L~~~g~l~~ViTQNIDgLh~rAG~~~-ielHGs~~~~~C~~C~~ 239 (393)
....+|.+-.++| ..++=-| |-|+.+ +.|+---...+|.+|+-
T Consensus 357 ~l~~~i~~~L~~g--qvll~ln------RrGyap~l~C~~Cg~~~~C~~C~~ 400 (665)
T PRK14873 357 LAFRAARDALEHG--PVLVQVP------RRGYVPSLACARCRTPARCRHCTG 400 (665)
T ss_pred HHHHHHHHHHhcC--cEEEEec------CCCCCCeeEhhhCcCeeECCCCCC
Confidence 4445555444455 4455444 445544 55555555556666653
No 91
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=78.63 E-value=4.8 Score=40.08 Aligned_cols=53 Identities=15% Similarity=0.214 Sum_probs=39.2
Q ss_pred HHHhhCCeEEEeccCcch-hh-HHHHHHHHHhCCCeEEEECCCCCCCCCcccEEE
Q 016198 319 EAAKECDAFLVLGSSLMT-MS-AYRLVRAAHEAGSTIAIVNVGETRADDLTTLKI 371 (393)
Q Consensus 319 ~~~~~aDllLVvGTSl~V-~p-~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I 371 (393)
+.+.++|++|++|+.... .| ....+..++++|+++|.|++..+.....++..|
T Consensus 152 ~d~~~ad~il~~G~n~~~~~~~~~~~~~~a~~~g~kvv~idp~~s~t~~~ad~~i 206 (374)
T cd00368 152 ADIENADLILLWGSNPAETHPVLAARLRRAKKRGAKLIVIDPRRTETAAKADEWL 206 (374)
T ss_pred HHHhhCCEEEEEcCChHHhChHHHHHHHHHHHCCCeEEEEcCCCCcchHhhCEee
Confidence 346799999999987654 33 334455667789999999999887766666654
No 92
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=78.61 E-value=2.6 Score=46.85 Aligned_cols=61 Identities=15% Similarity=0.308 Sum_probs=48.0
Q ss_pred HHHHhhCCeEEEeccCcch-hhH-HHHHHHHHh-CCCeEEEECCCCCCCCCcccEEEECcHHHH
Q 016198 318 MEAAKECDAFLVLGSSLMT-MSA-YRLVRAAHE-AGSTIAIVNVGETRADDLTTLKISARLGEI 378 (393)
Q Consensus 318 ~~~~~~aDllLVvGTSl~V-~p~-~~lv~~a~~-~ga~li~IN~~~t~~d~~~~l~I~~d~~~v 378 (393)
.+.+..+|++|+||+.-.- +|+ +..+++|++ +|.++|.+.+..++..+.+++.++-+-+.=
T Consensus 415 i~dve~ad~vliIG~N~te~HPV~asr~kra~k~~G~KliV~D~R~~emaerAdlf~~pkpGtd 478 (978)
T COG3383 415 IEDVEGADLVLIIGANPTEGHPVLASRLKRAHKLRGQKLIVIDPRKHEMAERADLFLHPKPGTD 478 (978)
T ss_pred HHHHhhCCeEEEEcCCCCccCccHHHHHHHHHHhcCCeEEEeccchhHHHHhhhcccCCCCCcc
Confidence 3567899999999986553 555 456666666 899999999999999999999888665543
No 93
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=78.30 E-value=5 Score=43.51 Aligned_cols=43 Identities=21% Similarity=0.307 Sum_probs=32.8
Q ss_pred HHHhhCCeEEEeccCcch-hh-HHHHHHHHHhCCCeEEEECCCCC
Q 016198 319 EAAKECDAFLVLGSSLMT-MS-AYRLVRAAHEAGSTIAIVNVGET 361 (393)
Q Consensus 319 ~~~~~aDllLVvGTSl~V-~p-~~~lv~~a~~~ga~li~IN~~~t 361 (393)
+.+.++|++|++|+...+ .| ....+..++++|+++|.||+-.+
T Consensus 159 ~Di~~ad~Il~~G~Np~~~~p~~~~~l~~A~~rGakIIvIdP~~~ 203 (574)
T cd02767 159 EDFEHTDLIFFIGQNPGTNHPRMLHYLREAKKRGGKIIVINPLRE 203 (574)
T ss_pred HHHhcCCEEEEEcCChhhhcHHHHHHHHHHHHCCCEEEEECCCcc
Confidence 456789999999986544 33 34445678889999999999754
No 94
>PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional
Probab=77.99 E-value=5.2 Score=40.20 Aligned_cols=59 Identities=19% Similarity=0.147 Sum_probs=47.2
Q ss_pred hCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCC-CCCCcccEEEECcHHHHHHHHHHhC
Q 016198 323 ECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGET-RADDLTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 323 ~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t-~~d~~~~l~I~~d~~~vL~~L~~~~ 386 (393)
..+|.|-+|.|-+++=...+ +.-..+|-||.++. ++-+.+|+.|-+|+-++||+|.+.+
T Consensus 252 ~P~lYiA~GISGaiQH~~Gm-----~~s~~IVAIN~Dp~APIF~~ADygiVgD~~eilP~L~e~l 311 (313)
T PRK03363 252 KPELYLAVGISGQIQHMVGA-----NASQTIFAINKDKNAPIFQYADYGIVGDAVKILPALTAAL 311 (313)
T ss_pred CccEEEEEccccHHHHHhhc-----ccCCEEEEEcCCCCCCchhhCCeeEeeeHHHHHHHHHHHh
Confidence 45799999999877655554 22345899999974 5778999999999999999998865
No 95
>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit, proteobacterial-type. This model is well-defined, with a large, unpopulated trusted/noise gap.
Probab=77.86 E-value=4.7 Score=46.66 Aligned_cols=54 Identities=19% Similarity=0.272 Sum_probs=42.0
Q ss_pred HHHhhCCeEEEeccCcch-hhH-HHHHHHHHhCCCeEEEECCCCCCCCCcccEEEE
Q 016198 319 EAAKECDAFLVLGSSLMT-MSA-YRLVRAAHEAGSTIAIVNVGETRADDLTTLKIS 372 (393)
Q Consensus 319 ~~~~~aDllLVvGTSl~V-~p~-~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~ 372 (393)
+.+.++|++|++|+.... .|. ...+..++++|+++|.||+..+.....+|+.|.
T Consensus 217 ~Di~~Ad~Ilv~G~Np~es~p~~~~~i~~Ak~~GakiIvIDPR~t~tA~~AD~~l~ 272 (1009)
T TIGR01553 217 VDIKNSDLILVMGGNPAENHPIGFKWAIRAKKKGAKIIHIDPRFNRTATVADLYAP 272 (1009)
T ss_pred HHHHhCCEEEEECCChhhhChHHHHHHHHHHHcCCEEEEEcCCCCchhHhhccEeC
Confidence 457899999999987653 443 455566788899999999998887777777654
No 96
>PLN00022 electron transfer flavoprotein subunit alpha; Provisional
Probab=77.37 E-value=4.5 Score=41.39 Aligned_cols=60 Identities=15% Similarity=0.173 Sum_probs=47.9
Q ss_pred hCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCC-CCCCcccEEEECcHHHHHHHHHHhCC
Q 016198 323 ECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGET-RADDLTTLKISARLGEILPRVLDVGS 387 (393)
Q Consensus 323 ~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t-~~d~~~~l~I~~d~~~vL~~L~~~~~ 387 (393)
..+|.|-+|.|-.++=...+ +.-..+|-||.++. ++-+.+|+.|-+|+-++||+|++.+.
T Consensus 293 ~P~lYIA~GISGAiQH~~Gm-----~~s~~IVAIN~D~~APIF~~ADygIVgD~~evlP~Lie~lk 353 (356)
T PLN00022 293 APELYIAVGISGAIQHLAGM-----KDSKVIVAINKDADAPIFQVADYGLVADLFEAVPELLEKLP 353 (356)
T ss_pred CCcEEEEEecchHHHHHhhc-----ccCCEEEEECCCCCCCchhhcCeeEeeeHHHHHHHHHHHHH
Confidence 55799999999877655554 22345899999975 57789999999999999999998764
No 97
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=77.29 E-value=1.1 Score=47.32 Aligned_cols=68 Identities=15% Similarity=0.196 Sum_probs=50.3
Q ss_pred HHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC---cccEEEECcHHHHHHHHHHhCC
Q 016198 319 EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD---LTTLKISARLGEILPRVLDVGS 387 (393)
Q Consensus 319 ~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~---~~~l~I~~d~~~vL~~L~~~~~ 387 (393)
.++++||++|++|+-|+-.--+.+.... .+++++|.||..+..+.. ..++.|.+|++.++.+|.+.+.
T Consensus 272 ~ALk~ADvvll~GarlnwiLhfG~~Pk~-~kd~KfIqvd~n~Eel~~n~~k~~v~i~gDig~~~~~L~e~l~ 342 (571)
T KOG1185|consen 272 LALKKADVVLLAGARLNWILHFGLPPKW-SKDVKFIQVDINPEELGNNFVKPDVAIQGDIGLFVLQLVEELQ 342 (571)
T ss_pred HHHhhCCEEEEecceeeEEEecCCCCcc-CCCceEEEEeCCHHHHhcccCCCCceeeecHHHHHHHHHHHhc
Confidence 4689999999999999852222221121 347899999988755433 5678899999999999998764
No 98
>PRK09939 putative oxidoreductase; Provisional
Probab=77.28 E-value=5.6 Score=44.62 Aligned_cols=43 Identities=21% Similarity=0.323 Sum_probs=32.9
Q ss_pred HHHhhCCeEEEeccCcch-hh-HHHHHHHHHhCCCeEEEECCCCC
Q 016198 319 EAAKECDAFLVLGSSLMT-MS-AYRLVRAAHEAGSTIAIVNVGET 361 (393)
Q Consensus 319 ~~~~~aDllLVvGTSl~V-~p-~~~lv~~a~~~ga~li~IN~~~t 361 (393)
+.+.++|++|++|+...+ .| ....+..++++|+++|.||+-.+
T Consensus 204 ~Di~~ad~Ili~G~Np~~~hP~~~~~l~~a~~rGakiIvIDPr~~ 248 (759)
T PRK09939 204 EDFEKCDLVICIGHNPGTNHPRMLTSLRALVKRGAKMIAINPLQE 248 (759)
T ss_pred HHHhhCCEEEEeCCChHHHHHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 457899999999987654 44 33445567788999999999664
No 99
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type. This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.
Probab=77.04 E-value=5.3 Score=43.57 Aligned_cols=53 Identities=15% Similarity=0.354 Sum_probs=39.6
Q ss_pred HHHhhCCeEEEeccCcch-hh-HHHHHHHHHhCCCeEEEECCCCCCCCCcccEEE
Q 016198 319 EAAKECDAFLVLGSSLMT-MS-AYRLVRAAHEAGSTIAIVNVGETRADDLTTLKI 371 (393)
Q Consensus 319 ~~~~~aDllLVvGTSl~V-~p-~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I 371 (393)
+.+.++|++|++|+.... .| ....+..++++|+++|.|++..+.....++..|
T Consensus 151 ~di~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~klvvidp~~s~ta~~ad~~i 205 (671)
T TIGR01591 151 SEIENADLIVIIGYNPAESHPVVAQYLKNAKRNGAKIIVIDPRKTETAKIADLHI 205 (671)
T ss_pred HHHHhCCEEEEECCChhhccCHHHHHHHHHHHCCCeEEEECCCCChhhHhhCccc
Confidence 357789999999996543 33 345566677889999999998887766666554
No 100
>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=77.04 E-value=3.5 Score=42.97 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=40.1
Q ss_pred HHhhCCeEEEeccCcchh---hHHHHHHHHHhCCCeEEEECCCCCCCCCcccEEEE
Q 016198 320 AAKECDAFLVLGSSLMTM---SAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKIS 372 (393)
Q Consensus 320 ~~~~aDllLVvGTSl~V~---p~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~ 372 (393)
.+.++|++|++|+..... +....+..++++|+++|.|++..+.....+|..|.
T Consensus 153 d~~~ad~il~~G~n~~~~~~~~~~~~~~~a~~~g~kiivIdPr~t~ta~~AD~~i~ 208 (454)
T cd02755 153 DFENARYIILFGRNLAEAIIVVDARRLMKALENGAKVVVVDPRFSELASKADEWIP 208 (454)
T ss_pred chhcCCEEEEECcCcccccccHHHHHHHHHHHCCCeEEEECCCCChhhHhhCEecC
Confidence 457999999999975442 33444556777899999999998887777777654
No 101
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=77.00 E-value=5 Score=39.87 Aligned_cols=87 Identities=23% Similarity=0.364 Sum_probs=53.8
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEeCCCcCccCCCCCcCCCCCCCcCCCCCCChHHHhhchhHHHHHHHHHhh
Q 016198 98 KKAVPDADPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSRARRRYWARSYA 177 (393)
Q Consensus 98 ~~~~p~~~~~~~~~l~~l~~~i~~ak~IVVlTGAGISasSGIPdFRs~~Gl~~~~~~p~~~~~f~~~~~~~~~~w~~~~~ 177 (393)
|+++|-..|-..-. .+..+.|-++.++||.+|.| |||..+..+| |. +-...- .++ +
T Consensus 160 RRVVpSP~P~~IvE-~~~Ik~L~~~g~vVI~~GGG-----GIPVv~~~~~-~~-GVeAVI----DKD-----------l- 215 (312)
T COG0549 160 RRVVPSPKPVRIVE-AEAIKALLESGHVVIAAGGG-----GIPVVEEGAG-LQ-GVEAVI----DKD-----------L- 215 (312)
T ss_pred eEecCCCCCccchh-HHHHHHHHhCCCEEEEeCCC-----CcceEecCCC-cc-eeeEEE----ccH-----------H-
Confidence 45666333333222 34455566688999999999 9999999887 53 222110 000 1
Q ss_pred hhhcccCCCCCHHHHHHHHHHhcCCccEEEEccCcchhhhcCCCc
Q 016198 178 GWRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP 222 (393)
Q Consensus 178 ~~~~~~~a~Pn~~H~~La~L~~~g~l~~ViTQNIDgLh~rAG~~~ 222 (393)
+-..|+++.+.. .+||.+.||+.+..-|-++
T Consensus 216 ------------asalLA~~i~AD--~liILTdVd~Vy~n~gkp~ 246 (312)
T COG0549 216 ------------ASALLAEQIDAD--LLIILTDVDAVYVNFGKPN 246 (312)
T ss_pred ------------HHHHHHHHhcCC--EEEEEeccchheecCCCcc
Confidence 124566666543 4799999999998777554
No 102
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=76.55 E-value=9.5 Score=37.96 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHhCCCeEEEECCCC
Q 016198 337 MSAYRLVRAAHEAGSTIAIVNVGE 360 (393)
Q Consensus 337 ~p~~~lv~~a~~~ga~li~IN~~~ 360 (393)
..+.++++.|.+.+.|+|.+.-..
T Consensus 143 eKi~r~~e~A~~~~lPlV~l~dsg 166 (292)
T PRK05654 143 EKIVRAVERAIEEKCPLVIFSASG 166 (292)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCC
Confidence 556777788888899988887433
No 103
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=76.51 E-value=14 Score=36.66 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHhCCCeEEEECCC
Q 016198 337 MSAYRLVRAAHEAGSTIAIVNVG 359 (393)
Q Consensus 337 ~p~~~lv~~a~~~ga~li~IN~~ 359 (393)
..+.++++.|.+.+.|+|.+--.
T Consensus 142 eKi~r~~e~A~~~~lPlV~l~dS 164 (285)
T TIGR00515 142 EKFVRAIEKALEDNCPLIIFSAS 164 (285)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcC
Confidence 56678888888889998877543
No 104
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=76.48 E-value=4.5 Score=43.19 Aligned_cols=53 Identities=25% Similarity=0.508 Sum_probs=39.9
Q ss_pred HHhhCCeEEEeccCcch-hh-HHHHHHHHHhC--CCeEEEECCCCCCCCCcccEEEE
Q 016198 320 AAKECDAFLVLGSSLMT-MS-AYRLVRAAHEA--GSTIAIVNVGETRADDLTTLKIS 372 (393)
Q Consensus 320 ~~~~aDllLVvGTSl~V-~p-~~~lv~~a~~~--ga~li~IN~~~t~~d~~~~l~I~ 372 (393)
.+.++|++|++|+.... .| ....+..++++ |+++|.|++..+.....++..|.
T Consensus 154 Di~~ad~Il~~G~n~~~s~~~~~~~~~~a~~~~~G~klividP~~t~ta~~Ad~~l~ 210 (565)
T cd02754 154 DIEHADCFFLIGSNMAECHPILFRRLLDRKKANPGAKIIVVDPRRTRTADIADLHLP 210 (565)
T ss_pred HHhhCCEEEEECCChhhhhhHHHHHHHHHHhcCCCCEEEEEcCCCCcchHHhCeeeC
Confidence 46799999999998654 22 23445566666 99999999998887777777653
No 105
>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit. This model represents the molybdopterin subunit, typically called the alpha subunit, of various proteins that also contain an iron-sulfur subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase, ethylbenzene dehydrogenase, and an archaeal respiratory nitrate reductase. This alpha subunit has a twin-arginine translocation (TAT) signal for Sec-independent translocation across the plasma membrane.
Probab=76.44 E-value=3.6 Score=46.99 Aligned_cols=54 Identities=11% Similarity=0.134 Sum_probs=42.2
Q ss_pred HHHhhCCeEEEeccCcch--hhHHHHHHHHHhCCCeEEEECCCCCCCCCcccEEEE
Q 016198 319 EAAKECDAFLVLGSSLMT--MSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKIS 372 (393)
Q Consensus 319 ~~~~~aDllLVvGTSl~V--~p~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~ 372 (393)
..+.++|++|++|+.... .+....+..++++|+++|.|++..+.....+|..|.
T Consensus 220 ~D~~na~~Il~~G~Np~~t~~~~~~~l~~a~~~GaklVvIdPr~t~tA~~AD~wlp 275 (912)
T TIGR03479 220 DDWFNADYIIMWGSNPSVTRIPDAHFLSEARYNGARVVSIAPDYNPSTIHADLWLP 275 (912)
T ss_pred hhhhcCcEEEEecCChHHcCCchHHHHHHHHhcCCeEEEECCCCChhhhhCCeecC
Confidence 456789999999987654 335566667888899999999998887777777643
No 106
>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=75.65 E-value=4.5 Score=43.13 Aligned_cols=53 Identities=17% Similarity=0.331 Sum_probs=40.5
Q ss_pred HHhhCCeEEEeccCcchh-h-------HHHHHHHHHhCCCeEEEECCCCCCCCCcccEEEE
Q 016198 320 AAKECDAFLVLGSSLMTM-S-------AYRLVRAAHEAGSTIAIVNVGETRADDLTTLKIS 372 (393)
Q Consensus 320 ~~~~aDllLVvGTSl~V~-p-------~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~ 372 (393)
.+.++|++|++|+...+. | ....+..++++|+++|.|++..+.....+|.+|.
T Consensus 153 D~~~ad~il~~G~N~~~s~~~~~~~~~~~~~~~~a~~~G~kliviDPr~t~ta~~AD~~l~ 213 (539)
T cd02762 153 DIDRTDYLLILGANPLQSNGSLRTAPDRVLRLKAAKDRGGSLVVIDPRRTETAKLADEHLF 213 (539)
T ss_pred hhhhCCEEEEEecChHhhCCccccccCHHHHHHHHHhCCCEEEEECCCCchhhHhcCEeeC
Confidence 468999999999865542 1 2235566778899999999999888777887754
No 107
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=74.97 E-value=7.3 Score=32.65 Aligned_cols=55 Identities=13% Similarity=0.146 Sum_probs=44.8
Q ss_pred HHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECC-CCCCCCCcccEEEECc
Q 016198 320 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNV-GETRADDLTTLKISAR 374 (393)
Q Consensus 320 ~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~-~~t~~d~~~~l~I~~d 374 (393)
.+++-|++|++.-|-.+.-..+.++.++++|+++|.|=- ...++.+.+++.|...
T Consensus 44 ~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~ 99 (128)
T cd05014 44 MVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIAITGNPNSTLAKLSDVVLDLP 99 (128)
T ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCchhhhCCEEEECC
Confidence 357889999999999999999999999999999776654 4567777888877654
No 108
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=74.74 E-value=1.7 Score=29.42 Aligned_cols=12 Identities=33% Similarity=0.778 Sum_probs=9.2
Q ss_pred eeecCCCCcccc
Q 016198 231 TVVCLDCGFSFC 242 (393)
Q Consensus 231 ~~~C~~C~~~~~ 242 (393)
.+.|.+|+..+.
T Consensus 2 ~~~CP~C~~~~~ 13 (38)
T TIGR02098 2 RIQCPNCKTSFR 13 (38)
T ss_pred EEECCCCCCEEE
Confidence 368999998764
No 109
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=74.23 E-value=2.3 Score=30.69 Aligned_cols=14 Identities=36% Similarity=0.937 Sum_probs=10.8
Q ss_pred cceeecCCCCcccc
Q 016198 229 VYTVVCLDCGFSFC 242 (393)
Q Consensus 229 ~~~~~C~~C~~~~~ 242 (393)
++..+|.+|+..+.
T Consensus 3 ~Yey~C~~Cg~~fe 16 (52)
T TIGR02605 3 IYEYRCTACGHRFE 16 (52)
T ss_pred CEEEEeCCCCCEeE
Confidence 35679999998764
No 110
>PRK06260 threonine synthase; Validated
Probab=74.09 E-value=1.7 Score=44.78 Aligned_cols=13 Identities=31% Similarity=0.981 Sum_probs=10.7
Q ss_pred ceeecCCCCcccc
Q 016198 230 YTVVCLDCGFSFC 242 (393)
Q Consensus 230 ~~~~C~~C~~~~~ 242 (393)
+.++|..|++.|+
T Consensus 2 ~~~~C~~cg~~~~ 14 (397)
T PRK06260 2 YWLKCIECGKEYD 14 (397)
T ss_pred CEEEECCCCCCCC
Confidence 4689999998875
No 111
>cd02770 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=72.93 E-value=8 Score=42.05 Aligned_cols=54 Identities=15% Similarity=0.169 Sum_probs=40.3
Q ss_pred HHHhhCCeEEEeccCcch-hh----HHHHHHHHHhCCCeEEEECCCCCCCCC-cccEEEE
Q 016198 319 EAAKECDAFLVLGSSLMT-MS----AYRLVRAAHEAGSTIAIVNVGETRADD-LTTLKIS 372 (393)
Q Consensus 319 ~~~~~aDllLVvGTSl~V-~p----~~~lv~~a~~~ga~li~IN~~~t~~d~-~~~l~I~ 372 (393)
+.+.+||++|++|+...+ .+ ....+..++++|+++|.|++..+.... .+|..|.
T Consensus 162 ~D~~~a~~ii~wG~N~~~~~~~~~~~~~~~~~a~~~G~klivIDPr~t~tA~~~AD~~i~ 221 (617)
T cd02770 162 DDLKDSKLVVLFGHNPAETRMGGGGSTYYYLQAKKAGAKFIVIDPRYTDTAVTLADEWIP 221 (617)
T ss_pred HHHhcCCEEEEECCCHHHhcCCCCchHHHHHHHHHcCCeEEEECCCCCccccccCCEEEC
Confidence 356789999999987654 22 234556677889999999999988764 6776644
No 112
>PF14353 CpXC: CpXC protein
Probab=72.90 E-value=1.2 Score=38.31 Aligned_cols=15 Identities=20% Similarity=0.492 Sum_probs=11.8
Q ss_pred CCCcCCCCCCccCCh
Q 016198 297 HIPTCQKCNGVLKPD 311 (393)
Q Consensus 297 ~iP~Cp~CGg~LrP~ 311 (393)
-.-+||+||...+.+
T Consensus 37 ~~~~CP~Cg~~~~~~ 51 (128)
T PF14353_consen 37 FSFTCPSCGHKFRLE 51 (128)
T ss_pred CEEECCCCCCceecC
Confidence 456899999987765
No 113
>cd02763 MopB_2 The MopB_2 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=72.24 E-value=7.8 Score=42.98 Aligned_cols=54 Identities=11% Similarity=0.075 Sum_probs=40.7
Q ss_pred HHHhhCCeEEEeccCcch--hhHHHHHHHHHhCCCeEEEECCCCCCCCCcccEEEE
Q 016198 319 EAAKECDAFLVLGSSLMT--MSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKIS 372 (393)
Q Consensus 319 ~~~~~aDllLVvGTSl~V--~p~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~ 372 (393)
+.+.+||++|++|+.... .|+...+..++++|+++|.||+..+.....+|..|.
T Consensus 151 ~D~~~Ad~Ivl~G~n~~~~~~p~~~~i~~ak~~GaKlIvIDPr~t~ta~~AD~wl~ 206 (679)
T cd02763 151 PDLEHTKYFMMIGVAEDHHSNPFKIGIQKLKRRGGKFVAVNPVRTGYAAIADEWVP 206 (679)
T ss_pred hHHHhCCEEEEECCCCcccCchHHHHHHHHHhCCCcEEEEcCcCCcchHhhCeecC
Confidence 357799999999985432 355555556777899999999998887777777654
No 114
>TIGR00509 bisC_fam molybdopterin guanine dinucleotide-containing S/N-oxide reductases. This enzyme family shares sequence similarity and a requirement for a molydenum cofactor as the only prosthetic group. The form of the cofactor is a single molybdenum atom coordinated by two molybdopterin guanine dinucleotide molecules. Members of the family include biotin sulfoxide reductase, dimethylsulfoxide reductase, and trimethylamine-N-oxide reductase, although a single member may show all those activities and related activities; it may not be possible to resolve the primary function for members of this family by sequence comparison alone. A number of similar molybdoproteins in which the N-terminal region contains a CXXXC motif and may bind an iron-sulfur cluster are excluded from this set, including formate dehydrogenases and nitrate reductases. Also excluded is the A chain of a heteromeric, anaerobic DMSO reductase, which also contains the CXXXC motif.
Probab=71.57 E-value=7.7 Score=43.36 Aligned_cols=51 Identities=10% Similarity=0.237 Sum_probs=39.3
Q ss_pred HhhCCeEEEeccCcchh----------hHHHHHHHHHhCCCeEEEECCCCCCCCCcc-cEEE
Q 016198 321 AKECDAFLVLGSSLMTM----------SAYRLVRAAHEAGSTIAIVNVGETRADDLT-TLKI 371 (393)
Q Consensus 321 ~~~aDllLVvGTSl~V~----------p~~~lv~~a~~~ga~li~IN~~~t~~d~~~-~l~I 371 (393)
+.++|++|++|+...+. +....+..++++|+++|.|++..|.....+ |+.|
T Consensus 165 ~~~a~~il~~G~Np~~t~~~~~~~~~~~~~~~~~~a~~~G~klIvIDPr~t~tA~~aaD~~l 226 (770)
T TIGR00509 165 LENSKVLVLWGADPLKTSQIAWGIPDHGGYEYLERLKAKGKRVISIDPVRTETAEFFGAEWI 226 (770)
T ss_pred HhcCCEEEEeCCCHHHhCccccccCCcchHHHHHHHHHcCCEEEEEcCCCCcchhhccCeEe
Confidence 57899999999875541 445666778889999999999988876654 5553
No 115
>cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evidence remains of a molybdopterin binding site, this protein domain belongs to t
Probab=71.24 E-value=11 Score=38.63 Aligned_cols=44 Identities=25% Similarity=0.373 Sum_probs=33.3
Q ss_pred HHHhhCCeEEEeccCcc-hhh-HHHHHHHHHhCCCeEEEECCCCCC
Q 016198 319 EAAKECDAFLVLGSSLM-TMS-AYRLVRAAHEAGSTIAIVNVGETR 362 (393)
Q Consensus 319 ~~~~~aDllLVvGTSl~-V~p-~~~lv~~a~~~ga~li~IN~~~t~ 362 (393)
+.++++|++|++|+... ..| ....+..++++|+++|.|++..+.
T Consensus 148 ~di~~ad~il~~G~n~~~~~p~~~~~l~~a~~~g~k~i~idp~~~~ 193 (414)
T cd02772 148 AEISELDRVLVIGSNLRKEHPLLAQRLRQAVKKGAKLSAINPADDD 193 (414)
T ss_pred HHHHhCCEEEEECCCccccchHHHHHHHHHHHcCCEEEEEeCccch
Confidence 45788999999999864 344 335556677889999999987654
No 116
>PF00384 Molybdopterin: Molybdopterin oxidoreductase; InterPro: IPR006656 This domain is found in a number of molybdopterin-containing oxidoreductases, tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where a single domain constitutes almost the entire subunit. The formylmethanofuran dehydrogenase catalyses the first step in methane formation from CO2 in methanogenic archaea and has a molybdopterin dinucleotide cofactor []. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E 3DMR_A 4DMR_A 1H5N_C 1E5V_A ....
Probab=70.84 E-value=5.6 Score=40.41 Aligned_cols=53 Identities=19% Similarity=0.275 Sum_probs=37.2
Q ss_pred HHhhCCeEEEeccCcch-hh-H-HHHHHHHHhCCCeEEEECCCCCCCCCcccEEEE
Q 016198 320 AAKECDAFLVLGSSLMT-MS-A-YRLVRAAHEAGSTIAIVNVGETRADDLTTLKIS 372 (393)
Q Consensus 320 ~~~~aDllLVvGTSl~V-~p-~-~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~ 372 (393)
.+.++|++|++|+.... .| . .++...++++|+++|.|++..+.....++..|.
T Consensus 108 D~~~ad~il~~G~n~~~~~~~~~~~~~~~~~~~g~k~v~vdP~~t~~a~~ad~~i~ 163 (432)
T PF00384_consen 108 DIENADVILIWGANPAESHPHLNARFRKAARKRGAKLVVVDPRRTPTAAKADEWIP 163 (432)
T ss_dssp GGGH-SEEEEES--HHHHSHHHHHHHHHHHHHCTSEEEEEESSB-HHGGGTSEEEE
T ss_pred eeeccceEEEcccCccccccccccccccccccCCcceEEEEeccchhhhhcccccc
Confidence 57899999999997765 33 2 466667888899999999998876566666543
No 117
>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit. This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation.
Probab=70.34 E-value=10 Score=42.48 Aligned_cols=44 Identities=25% Similarity=0.338 Sum_probs=33.1
Q ss_pred HHHhhCCeEEEeccCcch-hh-HHHHHHHHHhCCCeEEEECCCCCC
Q 016198 319 EAAKECDAFLVLGSSLMT-MS-AYRLVRAAHEAGSTIAIVNVGETR 362 (393)
Q Consensus 319 ~~~~~aDllLVvGTSl~V-~p-~~~lv~~a~~~ga~li~IN~~~t~ 362 (393)
+.+.++|++|++|+...+ .| ....+..++++|+++|.||+-.++
T Consensus 194 ~Di~~ad~Il~~G~Np~~~~p~~~~~l~~a~~rGakiIvIdP~~~~ 239 (743)
T TIGR01701 194 EDFEHTDCLVFIGSNAGTNHPRMLKYLYAAKKRGAKIIAINPLRER 239 (743)
T ss_pred hHHHhCCEEEEEecCcccccHHHHHHHHHHHHCCCEEEEECCCCcc
Confidence 457799999999987544 34 345556788899999999996543
No 118
>COG2025 FixB Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=70.27 E-value=10 Score=38.16 Aligned_cols=60 Identities=15% Similarity=0.179 Sum_probs=48.6
Q ss_pred hCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCC-CCCCcccEEEECcHHHHHHHHHHhCC
Q 016198 323 ECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGET-RADDLTTLKISARLGEILPRVLDVGS 387 (393)
Q Consensus 323 ~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t-~~d~~~~l~I~~d~~~vL~~L~~~~~ 387 (393)
..+|.|.+|.|-+++=...+ +.-..+|-||.++. ++=+.+|+-|-+|+-+++|+|.+.++
T Consensus 251 ~P~LYIA~GISGAiQHlaGm-----~~Sk~IVAINkD~nAPIF~~ADyGiVgDl~~ivP~Lie~l~ 311 (313)
T COG2025 251 APKLYIALGISGAIQHLAGM-----KDSKVIVAINKDPNAPIFQVADYGIVGDLFKIVPALIEALK 311 (313)
T ss_pred cccEEEEEecccHHHHHhhc-----ccCcEEEEEcCCCCCCccccCCeeeeeeHHHHHHHHHHHHh
Confidence 56799999999988666554 22346889999875 56788999999999999999998764
No 119
>PRK07591 threonine synthase; Validated
Probab=69.77 E-value=2.9 Score=43.51 Aligned_cols=14 Identities=21% Similarity=0.707 Sum_probs=11.1
Q ss_pred cceeecCCCCcccc
Q 016198 229 VYTVVCLDCGFSFC 242 (393)
Q Consensus 229 ~~~~~C~~C~~~~~ 242 (393)
+..++|..|+..|+
T Consensus 16 ~~~l~C~~Cg~~~~ 29 (421)
T PRK07591 16 AVALKCRECGAEYP 29 (421)
T ss_pred eeEEEeCCCCCcCC
Confidence 34589999998875
No 120
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=69.76 E-value=2.5 Score=45.22 Aligned_cols=68 Identities=15% Similarity=0.007 Sum_probs=42.3
Q ss_pred HHHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 016198 316 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 316 ~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~ 386 (393)
.+.+.++++|++|+||+++..+..... .....+.++|.|+..+..... ..++.| .|+.+.|.+|++.+
T Consensus 261 ~~~~~l~~aDliL~iG~~l~~~~~~~~--~~~~~~~~~I~id~~~~~~~~~~~~~~~i-~d~~~~L~~l~~~~ 330 (535)
T TIGR03394 261 ELSRLVEESDGLLLLGVILSDTNFAVS--QRKIDLRRTIHAFDRAVTLGYHVYADIPL-AGLVDALLALLCGL 330 (535)
T ss_pred HHHHHHHhCCEEEEECCcccccccccc--cccCCCCcEEEEeCCEEEECCeeECCccH-HHHHHHHHHhhhcc
Confidence 344567899999999999875422110 001124678888876654333 345566 56788888776643
No 121
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=69.22 E-value=3.6 Score=29.16 Aligned_cols=12 Identities=25% Similarity=0.537 Sum_probs=9.0
Q ss_pred eeecCCCCcccc
Q 016198 231 TVVCLDCGFSFC 242 (393)
Q Consensus 231 ~~~C~~C~~~~~ 242 (393)
..+|.+||..+.
T Consensus 3 ~y~C~~CG~~~~ 14 (46)
T PRK00398 3 EYKCARCGREVE 14 (46)
T ss_pred EEECCCCCCEEE
Confidence 468999997653
No 122
>cd02758 MopB_Tetrathionate-Ra The MopB_Tetrathionate-Ra CD contains tetrathionate reductase, subunit A, (TtrA) and other related proteins. The Salmonella enterica tetrathionate reductase catalyses the reduction of trithionate but not sulfur or thiosulfate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=68.95 E-value=8.2 Score=43.17 Aligned_cols=54 Identities=17% Similarity=0.112 Sum_probs=39.4
Q ss_pred HHHhhCCeEEEeccCcch-hh-----HHHHHHHHHhCCCeEEEECCCCCCCC---CcccEEEE
Q 016198 319 EAAKECDAFLVLGSSLMT-MS-----AYRLVRAAHEAGSTIAIVNVGETRAD---DLTTLKIS 372 (393)
Q Consensus 319 ~~~~~aDllLVvGTSl~V-~p-----~~~lv~~a~~~ga~li~IN~~~t~~d---~~~~l~I~ 372 (393)
+.+.++|++|++|+.... .| +.++.+...++|+++|.|++..+... ..++++|.
T Consensus 207 ~D~~~ad~il~~GsN~a~~~~~~~~~~~~l~~a~~~~G~KlVVVDPr~t~ta~~~~~Ad~wlp 269 (735)
T cd02758 207 PDFDNAEFALFIGTSPAQAGNPFKRQARRLAEARTEGNFKYVVVDPVLPNTTSAAGENIRWVP 269 (735)
T ss_pred cCHhhCcEEEEeCCCHHHhCCCcchHHHHHHHHHHhCCCEEEEECCCCCccccccccCCEEEC
Confidence 356899999999998754 33 34444443347899999999988766 77777654
No 123
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=68.57 E-value=2.9 Score=35.91 Aligned_cols=20 Identities=25% Similarity=0.561 Sum_probs=14.3
Q ss_pred eeeecccceeecCCCCcccc
Q 016198 223 LELHGTVYTVVCLDCGFSFC 242 (393)
Q Consensus 223 ielHGs~~~~~C~~C~~~~~ 242 (393)
+++.=--....|..|+..++
T Consensus 63 L~Ie~vp~~~~C~~Cg~~~~ 82 (117)
T PRK00564 63 LDIVDEKVELECKDCSHVFK 82 (117)
T ss_pred EEEEecCCEEEhhhCCCccc
Confidence 55555566789999996543
No 124
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=68.52 E-value=20 Score=38.26 Aligned_cols=12 Identities=33% Similarity=0.675 Sum_probs=8.2
Q ss_pred CcCCCCCCc-cCC
Q 016198 299 PTCQKCNGV-LKP 310 (393)
Q Consensus 299 P~Cp~CGg~-LrP 310 (393)
..||+||+. +++
T Consensus 254 ~~Cp~C~s~~l~~ 266 (505)
T TIGR00595 254 KTCPQCGSEDLVY 266 (505)
T ss_pred CCCCCCCCCeeEe
Confidence 469999873 443
No 125
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=68.39 E-value=5 Score=46.08 Aligned_cols=37 Identities=27% Similarity=0.450 Sum_probs=27.8
Q ss_pred CcCCCCCCccCCh--HHHHHHHHHHhhCCeEEEeccCcch
Q 016198 299 PTCQKCNGVLKPD--DRADKAMEAAKECDAFLVLGSSLMT 336 (393)
Q Consensus 299 P~Cp~CGg~LrP~--~~~~~a~~~~~~aDllLVvGTSl~V 336 (393)
..||.||+.---| +.++..-+.+.++|-+| |||-=-+
T Consensus 709 ~~cP~Cgs~~v~d~~~~ve~lRelA~EvDeVl-IgTDPDt 747 (1187)
T COG1110 709 DKCPRCGSRNVEDKTETVEALRELALEVDEIL-IGTDPDT 747 (1187)
T ss_pred ccCCCCCCccccccHHHHHHHHHHHhhcCEEE-EcCCCCC
Confidence 4799999965555 67777778888999865 6775555
No 126
>cd02773 MopB_Res-Cmplx1_Nad11 MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1. The NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75 kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Paracoccus denitrificans, this subunit is encoded by the nqo3 gene, and is part of the 14 distinct subunits constituting the 'minimal' functional enzyme. The Nad11/Nqo3 subunit is made
Probab=68.37 E-value=16 Score=36.96 Aligned_cols=50 Identities=18% Similarity=0.237 Sum_probs=33.6
Q ss_pred HHHhhCCeEEEeccCcch-hh--HHHHHHHHHhCCCeEEEECCCCCCCCCccc
Q 016198 319 EAAKECDAFLVLGSSLMT-MS--AYRLVRAAHEAGSTIAIVNVGETRADDLTT 368 (393)
Q Consensus 319 ~~~~~aDllLVvGTSl~V-~p--~~~lv~~a~~~ga~li~IN~~~t~~d~~~~ 368 (393)
+.++++|++|++|+.... .| +.++....++.|++++.|++..+.....++
T Consensus 141 ~di~~ad~il~~G~N~~~~~p~~~~~~~~~~~~~g~kli~idp~~~~t~~~~~ 193 (375)
T cd02773 141 AGIEEADAVLLVGTNPRFEAPVLNARIRKAWLHGGLKVGVIGPPVDLTYDYDH 193 (375)
T ss_pred HHHhhCCEEEEEcCCcchhchHHHHHHHHHHHcCCCEEEEEcCccccchhhcc
Confidence 356899999999998744 44 334433444568999999987655433333
No 127
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=68.35 E-value=3.3 Score=36.83 Aligned_cols=13 Identities=38% Similarity=0.802 Sum_probs=11.4
Q ss_pred CcCCCCCCccCCh
Q 016198 299 PTCQKCNGVLKPD 311 (393)
Q Consensus 299 P~Cp~CGg~LrP~ 311 (393)
..||.||+.|..+
T Consensus 124 f~Cp~Cg~~l~~~ 136 (147)
T smart00531 124 FTCPRCGEELEED 136 (147)
T ss_pred EECCCCCCEEEEc
Confidence 5799999999876
No 128
>cd02760 MopB_Phenylacetyl-CoA-OR The MopB_Phenylacetyl-CoA-OR CD contains the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), and other related proteins. The phenylacetyl-CoA:acceptor oxidoreductase has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=68.35 E-value=8.1 Score=43.38 Aligned_cols=54 Identities=11% Similarity=0.024 Sum_probs=41.9
Q ss_pred HHHhhCCeEEEeccCcchh--h-HHHHHHHHHhCCCeEEEECCCCCCCCCcccEEEE
Q 016198 319 EAAKECDAFLVLGSSLMTM--S-AYRLVRAAHEAGSTIAIVNVGETRADDLTTLKIS 372 (393)
Q Consensus 319 ~~~~~aDllLVvGTSl~V~--p-~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~ 372 (393)
..+.++|++|++|+..... | ..+.+..++++|+++|.|++..+.....++..|.
T Consensus 169 ~D~~~ad~Il~~G~Np~~s~~~~~~~~~~~ar~~GaKlIvVDPr~t~ta~~AD~wlp 225 (760)
T cd02760 169 ADTPLANYVISFGSNVEASGGPCAVTRHADARVRGYKRVQVEPHLSVTGACSAEWVP 225 (760)
T ss_pred chHhcCCEEEEECCCchHhcCcHHHHHHHHHHHcCCeEEEEcCCCCcchhhcCeEeC
Confidence 3567999999999987432 2 3455566778899999999999888778887754
No 129
>PRK13937 phosphoheptose isomerase; Provisional
Probab=68.22 E-value=13 Score=34.18 Aligned_cols=55 Identities=11% Similarity=0.089 Sum_probs=45.2
Q ss_pred HHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEE-CCCCCCCCCcccEEEECc
Q 016198 320 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKISAR 374 (393)
Q Consensus 320 ~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~I-N~~~t~~d~~~~l~I~~d 374 (393)
.+++-|++|++-.|..+.-....++.++++|+++|.| +...++..+.+|+.|.-.
T Consensus 103 ~~~~~Dl~i~iS~sG~t~~~~~~~~~ak~~g~~~I~iT~~~~s~L~~~ad~~l~~~ 158 (188)
T PRK13937 103 LGRPGDVLIGISTSGNSPNVLAALEKARELGMKTIGLTGRDGGKMKELCDHLLIVP 158 (188)
T ss_pred hCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEeC
Confidence 4578899999999999999999999999999998777 556677777888876543
No 130
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=68.00 E-value=11 Score=40.94 Aligned_cols=54 Identities=17% Similarity=0.284 Sum_probs=37.9
Q ss_pred HHHHhhCCeEEEeccCcch-hhH-HHHHHHHHhCC-CeEEEECCCCCCCCCcccEEE
Q 016198 318 MEAAKECDAFLVLGSSLMT-MSA-YRLVRAAHEAG-STIAIVNVGETRADDLTTLKI 371 (393)
Q Consensus 318 ~~~~~~aDllLVvGTSl~V-~p~-~~lv~~a~~~g-a~li~IN~~~t~~d~~~~l~I 371 (393)
.+.+.++|++|++|+.... .|. ...+..+.++| +++|.||+..+.....++.++
T Consensus 357 ~~di~~ad~il~~G~N~~~s~p~~~~~i~~a~~~ggaklividpr~s~ta~~Ad~~l 413 (603)
T TIGR01973 357 LADIEEADLVLLVGADLRQEAPLLNLRLRKAVKKGGAKVALIGIEKWNLTYPANTNL 413 (603)
T ss_pred HHHHHhCCEEEEEccCchhhhHHHHHHHHHHHhcCCcEEEEECCccccchhhhccce
Confidence 4467889999999987654 432 33344455555 899999998887766666654
No 131
>PRK12496 hypothetical protein; Provisional
Probab=67.68 E-value=3.6 Score=37.42 Aligned_cols=12 Identities=25% Similarity=0.562 Sum_probs=9.5
Q ss_pred eeecCCCCcccc
Q 016198 231 TVVCLDCGFSFC 242 (393)
Q Consensus 231 ~~~C~~C~~~~~ 242 (393)
..+|..|++.|+
T Consensus 127 ~~~C~gC~~~~~ 138 (164)
T PRK12496 127 RKVCKGCKKKYP 138 (164)
T ss_pred eEECCCCCcccc
Confidence 357999998775
No 132
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=67.18 E-value=11 Score=42.19 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=13.8
Q ss_pred hhcCCCc-eeeecccceeecCCCCc
Q 016198 216 HRAGSNP-LELHGTVYTVVCLDCGF 239 (393)
Q Consensus 216 ~rAG~~~-ielHGs~~~~~C~~C~~ 239 (393)
.|-|+.+ +.||=--+..+|.+|+.
T Consensus 428 nRRGys~~l~C~~Cg~v~~Cp~Cd~ 452 (730)
T COG1198 428 NRRGYAPLLLCRDCGYIAECPNCDS 452 (730)
T ss_pred ccCCccceeecccCCCcccCCCCCc
Confidence 3455555 55555555566666664
No 133
>TIGR00354 polC DNA polymerase, archaeal type II, large subunit. This model represents the large subunit, DP2, of a two subunit novel Archaeal replicative DNA polymerase first characterized for Pyrococcus furiosus. Structure of DP2 appears to be organized as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.
Probab=66.78 E-value=4.2 Score=46.20 Aligned_cols=20 Identities=25% Similarity=0.675 Sum_probs=14.8
Q ss_pred eeecccce-----eecCCCCcccch
Q 016198 224 ELHGTVYT-----VVCLDCGFSFCR 243 (393)
Q Consensus 224 elHGs~~~-----~~C~~C~~~~~~ 243 (393)
-|-||++. .+|.+|+..|.+
T Consensus 1000 Dl~GNLRaFsrQ~fRC~kC~~kYRR 1024 (1095)
T TIGR00354 1000 DIIGNLRAFSRQEVRCTKCNTKYRR 1024 (1095)
T ss_pred HhhhhHhhhhccceeecccCCcccc
Confidence 45688764 599999988754
No 134
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=66.77 E-value=12 Score=31.54 Aligned_cols=57 Identities=16% Similarity=0.114 Sum_probs=45.1
Q ss_pred HHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEE-CCCCCCCCCcccEEEECcHH
Q 016198 320 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKISARLG 376 (393)
Q Consensus 320 ~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~I-N~~~t~~d~~~~l~I~~d~~ 376 (393)
.+++-|++|++-.|-.+.-..+.++.++++|++++.| |....+..+.+|+.+.-.++
T Consensus 44 ~~~~~dl~I~iS~SG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~~~ 101 (120)
T cd05710 44 RLTEKSVVILASHSGNTKETVAAAKFAKEKGATVIGLTDDEDSPLAKLADYVIVYGFE 101 (120)
T ss_pred cCCCCcEEEEEeCCCCChHHHHHHHHHHHcCCeEEEEECCCCCcHHHhCCEEEEccCC
Confidence 3567799999988888888889999999999997655 44556677788888776666
No 135
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=66.68 E-value=12 Score=33.69 Aligned_cols=52 Identities=23% Similarity=0.300 Sum_probs=41.0
Q ss_pred HhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEE-CCCCCCCCCcccEEEE
Q 016198 321 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKIS 372 (393)
Q Consensus 321 ~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~I-N~~~t~~d~~~~l~I~ 372 (393)
+++-|++|++.-|-.+....+.++.++++|+++|.| +...+++.+.+++.+.
T Consensus 70 ~~~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~ 122 (179)
T TIGR03127 70 IKKGDLLIAISGSGETESLVTVAKKAKEIGATVAAITTNPESTLGKLADVVVE 122 (179)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEE
Confidence 467899999999999998999999999999998777 4455666666666543
No 136
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=66.55 E-value=17 Score=32.71 Aligned_cols=54 Identities=15% Similarity=0.195 Sum_probs=44.6
Q ss_pred HHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEE-CCCCCCCCCcccEEEEC
Q 016198 320 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKISA 373 (393)
Q Consensus 320 ~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~I-N~~~t~~d~~~~l~I~~ 373 (393)
.+++-|++|++-.|..+.-....++.++++|+++|.| |....++.+.+|+.|.-
T Consensus 98 ~~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~La~~aD~~l~~ 152 (177)
T cd05006 98 LGQPGDVLIGISTSGNSPNVLKALEAAKERGMKTIALTGRDGGKLLELADIEIHV 152 (177)
T ss_pred hCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEe
Confidence 4678899999998888888889999999999998777 56667777778877654
No 137
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=66.48 E-value=11 Score=42.43 Aligned_cols=54 Identities=19% Similarity=0.212 Sum_probs=37.3
Q ss_pred HHHHhhCCeEEEeccCcch-hhH--HHHHHHHHhCCCeEEEECCCCCCC-CCcccEEE
Q 016198 318 MEAAKECDAFLVLGSSLMT-MSA--YRLVRAAHEAGSTIAIVNVGETRA-DDLTTLKI 371 (393)
Q Consensus 318 ~~~~~~aDllLVvGTSl~V-~p~--~~lv~~a~~~ga~li~IN~~~t~~-d~~~~l~I 371 (393)
.+.++++|++|++|+.... .|. .++...++++|+++|.||+..+.. ...++..+
T Consensus 371 ~~Die~ad~ill~G~N~~~~~P~~~~ri~~a~k~~GakiivIDPr~t~t~a~~Ad~~l 428 (797)
T PRK07860 371 YADLEKAPAVLLVGFEPEEESPIVFLRLRKAARKHGLKVYSIAPFATRGLEKMGGTLL 428 (797)
T ss_pred HHHHHhCCEEEEEeCChhhhhHHHHHHHHHHHHhCCCEEEEECCCCchhhhhhhhcee
Confidence 4567899999999997655 453 344444556799999999987763 34444443
No 138
>cd02769 MopB_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=65.88 E-value=11 Score=41.05 Aligned_cols=48 Identities=13% Similarity=0.220 Sum_probs=36.3
Q ss_pred HhhCCeEEEeccCcch-h----------hHHHHHHHHHhCCCeEEEECCCCCCCCCccc
Q 016198 321 AKECDAFLVLGSSLMT-M----------SAYRLVRAAHEAGSTIAIVNVGETRADDLTT 368 (393)
Q Consensus 321 ~~~aDllLVvGTSl~V-~----------p~~~lv~~a~~~ga~li~IN~~~t~~d~~~~ 368 (393)
+.++|++|+.|+...+ . +....+..++++|+++|.|++..+.....++
T Consensus 168 ~~~a~~il~wG~Np~~t~~~~~~~~~~~~~~~~~~~ar~~GaklIvIDPr~t~tA~~ad 226 (609)
T cd02769 168 AEHTELVVAFGADPLKNAQIAWGGIPDHQAYSYLKALKDRGIRFISISPLRDDTAAELG 226 (609)
T ss_pred HhhCCeEEEECCChHHhCcccccccCCcchHHHHHHHHhCCCEEEEEcCCCCcchhhhc
Confidence 5799999999987543 1 2344555678889999999999888766554
No 139
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=65.59 E-value=5.2 Score=26.84 Aligned_cols=12 Identities=33% Similarity=0.706 Sum_probs=9.5
Q ss_pred eeecCCCCcccc
Q 016198 231 TVVCLDCGFSFC 242 (393)
Q Consensus 231 ~~~C~~C~~~~~ 242 (393)
.++|..||+.+.
T Consensus 2 ~~~C~~CG~i~~ 13 (34)
T cd00729 2 VWVCPVCGYIHE 13 (34)
T ss_pred eEECCCCCCEeE
Confidence 478999998764
No 140
>PRK15488 thiosulfate reductase PhsA; Provisional
Probab=65.11 E-value=12 Score=41.79 Aligned_cols=53 Identities=11% Similarity=0.128 Sum_probs=40.1
Q ss_pred HHhhCCeEEEeccCcch-hh--HHHHHHHHH-hCCCeEEEECCCCCCCCCcccEEEE
Q 016198 320 AAKECDAFLVLGSSLMT-MS--AYRLVRAAH-EAGSTIAIVNVGETRADDLTTLKIS 372 (393)
Q Consensus 320 ~~~~aDllLVvGTSl~V-~p--~~~lv~~a~-~~ga~li~IN~~~t~~d~~~~l~I~ 372 (393)
.+.++|++|++|+.... .| ..+.+..++ ++|+++|.|++..+.....+|..|.
T Consensus 193 D~~~ad~Il~~G~N~~~~~~~~~~~~~~~a~~~~G~kiivIDPr~s~ta~~Ad~~l~ 249 (759)
T PRK15488 193 DLANSKYIINFGHNLYEGINMSDTRGLMTAQMEKGAKLVVFEPRFSVVASKADEWHA 249 (759)
T ss_pred CHhhCcEEEEeccChHhcCCcHHHHHHHHHHHhCCCEEEEECCCCCcchhhCCeeec
Confidence 46799999999987654 33 334444555 7899999999999887777787754
No 141
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=65.09 E-value=12 Score=33.37 Aligned_cols=70 Identities=14% Similarity=0.150 Sum_probs=49.8
Q ss_pred HHHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCCc-----cc---EEEECcHHHHHHHHHHhC
Q 016198 316 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDL-----TT---LKISARLGEILPRVLDVG 386 (393)
Q Consensus 316 ~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~~-----~~---l~I~~d~~~vL~~L~~~~ 386 (393)
.+.+.+..||++++=||++.-....+++..++ ++..++++-+..+-.++. .+ -.+-.|.+.++..+....
T Consensus 55 ~~~~~l~~aD~viiTGsTlvN~Ti~~iL~~~~-~~~~vil~GpS~~~~P~~l~~~Gv~~v~g~~v~d~~~~~~~i~~Gg 132 (147)
T PF04016_consen 55 DAEEILPWADVVIITGSTLVNGTIDDILELAR-NAREVILYGPSAPLHPEALFDYGVTYVGGSRVVDPEKVLRAISEGG 132 (147)
T ss_dssp GHHHHGGG-SEEEEECHHCCTTTHHHHHHHTT-TSSEEEEESCCGGS-GGGGCCTT-SEEEEEEES-HHHHHHHHCTTS
T ss_pred HHHHHHccCCEEEEEeeeeecCCHHHHHHhCc-cCCeEEEEecCchhhHHHHHhCCCCEEEEEEEeCHHHHHHHHHcCC
Confidence 44567899999999999999999999998876 578899999886555431 11 224567888877665533
No 142
>COG1773 Rubredoxin [Energy production and conversion]
Probab=65.00 E-value=8.1 Score=29.00 Aligned_cols=14 Identities=21% Similarity=0.543 Sum_probs=11.4
Q ss_pred ceeecCCCCcccch
Q 016198 230 YTVVCLDCGFSFCR 243 (393)
Q Consensus 230 ~~~~C~~C~~~~~~ 243 (393)
.+.+|..|+..|+-
T Consensus 2 ~~~~C~~CG~vYd~ 15 (55)
T COG1773 2 KRWRCSVCGYVYDP 15 (55)
T ss_pred CceEecCCceEecc
Confidence 46899999998863
No 143
>PRK06450 threonine synthase; Validated
Probab=64.29 E-value=4.2 Score=41.11 Aligned_cols=11 Identities=36% Similarity=0.760 Sum_probs=9.2
Q ss_pred eecCCCCcccc
Q 016198 232 VVCLDCGFSFC 242 (393)
Q Consensus 232 ~~C~~C~~~~~ 242 (393)
++|..|++.|+
T Consensus 4 ~~C~~Cg~~~~ 14 (338)
T PRK06450 4 EVCMKCGKERE 14 (338)
T ss_pred eEECCcCCcCC
Confidence 68999998874
No 144
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=63.67 E-value=4.2 Score=42.10 Aligned_cols=13 Identities=38% Similarity=0.807 Sum_probs=10.7
Q ss_pred ceeecCCCCcccc
Q 016198 230 YTVVCLDCGFSFC 242 (393)
Q Consensus 230 ~~~~C~~C~~~~~ 242 (393)
+.++|..|++.|+
T Consensus 1 ~~l~C~~Cg~~~~ 13 (398)
T TIGR03844 1 YTLRCPGCGEVLP 13 (398)
T ss_pred CEEEeCCCCCccC
Confidence 3679999998875
No 145
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=63.57 E-value=15 Score=30.59 Aligned_cols=55 Identities=16% Similarity=0.132 Sum_probs=42.8
Q ss_pred HhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEEC-CCCCCCCCcccEEEECcH
Q 016198 321 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVN-VGETRADDLTTLKISARL 375 (393)
Q Consensus 321 ~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN-~~~t~~d~~~~l~I~~d~ 375 (393)
+.+-|++|++-.|-.+.-..+.++.++++|+++|.|= ...++..+.+|..|.-..
T Consensus 44 ~~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~~ 99 (126)
T cd05008 44 LDEDTLVIAISQSGETADTLAALRLAKEKGAKTVAITNVVGSTLAREADYVLYLRA 99 (126)
T ss_pred CCCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEEEECCCCChHHHhCCEEEEecC
Confidence 5788999999888888888899999999999987554 445666667777765444
No 146
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=63.53 E-value=4.4 Score=27.60 Aligned_cols=12 Identities=25% Similarity=0.744 Sum_probs=9.4
Q ss_pred eeecCCCCcccc
Q 016198 231 TVVCLDCGFSFC 242 (393)
Q Consensus 231 ~~~C~~C~~~~~ 242 (393)
..+|.+|+..|.
T Consensus 2 ~i~CP~C~~~f~ 13 (37)
T PF13719_consen 2 IITCPNCQTRFR 13 (37)
T ss_pred EEECCCCCceEE
Confidence 368999998764
No 147
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=63.42 E-value=5.7 Score=26.32 Aligned_cols=11 Identities=36% Similarity=0.966 Sum_probs=9.0
Q ss_pred eecCCCCcccc
Q 016198 232 VVCLDCGFSFC 242 (393)
Q Consensus 232 ~~C~~C~~~~~ 242 (393)
.+|..||+.|.
T Consensus 2 ~~C~~CGy~y~ 12 (33)
T cd00350 2 YVCPVCGYIYD 12 (33)
T ss_pred EECCCCCCEEC
Confidence 58999998764
No 148
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=63.08 E-value=5.2 Score=27.18 Aligned_cols=13 Identities=15% Similarity=0.562 Sum_probs=10.0
Q ss_pred eeecCCCCcccch
Q 016198 231 TVVCLDCGFSFCR 243 (393)
Q Consensus 231 ~~~C~~C~~~~~~ 243 (393)
..+|.+|+..|..
T Consensus 2 ~i~Cp~C~~~y~i 14 (36)
T PF13717_consen 2 IITCPNCQAKYEI 14 (36)
T ss_pred EEECCCCCCEEeC
Confidence 3689999988753
No 149
>cd02757 MopB_Arsenate-R This CD includes the respiratory arsenate reductase, As(V), catalytic subunit (ArrA) and other related proteins. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=62.40 E-value=19 Score=38.39 Aligned_cols=53 Identities=6% Similarity=0.077 Sum_probs=38.8
Q ss_pred HHhhCCeEEEeccCcch--hh--HHHHHHHHHhCCCeEEEECCCCCCCCCcccEEEE
Q 016198 320 AAKECDAFLVLGSSLMT--MS--AYRLVRAAHEAGSTIAIVNVGETRADDLTTLKIS 372 (393)
Q Consensus 320 ~~~~aDllLVvGTSl~V--~p--~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~ 372 (393)
.+.++|++|++|+.... ++ ....+..++++|+++|.|++..+.....+|..|.
T Consensus 159 D~~~a~~Il~~G~n~~~t~~~~~~~~~~~~a~~~gakliviDPr~s~ta~~AD~~l~ 215 (523)
T cd02757 159 DYANAKYILFFGADPLESNRQNPHAQRIWGGKMDQAKVVVVDPRLSNTAAKADEWLP 215 (523)
T ss_pred chhcCcEEEEECCChHHhCCCcHHHHHHHHHHHCCCEEEEECCCCChhhHhcCEeeC
Confidence 36799999999976533 22 2233445677899999999998887777777754
No 150
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=61.83 E-value=3.4 Score=36.35 Aligned_cols=11 Identities=36% Similarity=0.760 Sum_probs=9.1
Q ss_pred eecCCCCcccc
Q 016198 232 VVCLDCGFSFC 242 (393)
Q Consensus 232 ~~C~~C~~~~~ 242 (393)
.+|++|++.|.
T Consensus 2 H~Ct~Cg~~f~ 12 (131)
T PF09845_consen 2 HQCTKCGRVFE 12 (131)
T ss_pred cccCcCCCCcC
Confidence 48999998875
No 151
>PRK04023 DNA polymerase II large subunit; Validated
Probab=61.78 E-value=6.1 Score=45.23 Aligned_cols=20 Identities=30% Similarity=0.742 Sum_probs=14.9
Q ss_pred eeecccce-----eecCCCCcccch
Q 016198 224 ELHGTVYT-----VVCLDCGFSFCR 243 (393)
Q Consensus 224 elHGs~~~-----~~C~~C~~~~~~ 243 (393)
-|-||++. .+|.+|+..|.+
T Consensus 1025 Dl~GNLRaFsrQ~fRC~kC~~kYRR 1049 (1121)
T PRK04023 1025 DLIGNLRAFSRQEFRCTKCGAKYRR 1049 (1121)
T ss_pred hhhhhhhhhcccceeecccCccccc
Confidence 35688765 589999988754
No 152
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=61.57 E-value=2.8 Score=42.22 Aligned_cols=17 Identities=18% Similarity=0.381 Sum_probs=13.9
Q ss_pred cccceeecCCCCcccch
Q 016198 227 GTVYTVVCLDCGFSFCR 243 (393)
Q Consensus 227 Gs~~~~~C~~C~~~~~~ 243 (393)
|-++.--|+.|...|.-
T Consensus 242 GKY~~TAC~rC~t~y~l 258 (403)
T COG1379 242 GKYHLTACSRCYTRYSL 258 (403)
T ss_pred cchhHHHHHHhhhccCc
Confidence 77788899999988753
No 153
>PRK05580 primosome assembly protein PriA; Validated
Probab=61.56 E-value=15 Score=40.73 Aligned_cols=9 Identities=22% Similarity=0.918 Sum_probs=7.0
Q ss_pred CcCCCCCCc
Q 016198 299 PTCQKCNGV 307 (393)
Q Consensus 299 P~Cp~CGg~ 307 (393)
..||+||+.
T Consensus 422 ~~Cp~Cg~~ 430 (679)
T PRK05580 422 KACPECGST 430 (679)
T ss_pred CCCCCCcCC
Confidence 469999874
No 154
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=61.09 E-value=42 Score=35.20 Aligned_cols=70 Identities=14% Similarity=0.118 Sum_probs=51.8
Q ss_pred HHHHHhhCCeEEEeccCcchhhHHHHHHHHHhC--CCeEEEECCCCCCCCC-------cccEEEECcHHHHHHHHHHhC
Q 016198 317 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEA--GSTIAIVNVGETRADD-------LTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 317 a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~--ga~li~IN~~~t~~d~-------~~~l~I~~d~~~vL~~L~~~~ 386 (393)
..+...+.|+|.+-.++.+...+.++++..++. ++++|+-....+..++ .+|.++.|..+.+|.+|++..
T Consensus 62 ~~~~~~~~Dlv~is~~t~~~~~~~~ia~~iK~~~p~~~vv~GG~h~t~~pe~~l~~~~~vD~Vv~GEgE~~l~~l~~g~ 140 (472)
T TIGR03471 62 TLAIAKDYDLVVLHTSTPSFPSDVKTAEALKEQNPATKIGFVGAHVAVLPEKTLKQGPAIDFVCRREFDYTIKEVAEGK 140 (472)
T ss_pred HHHHhcCCCEEEEECCCcchHHHHHHHHHHHHhCCCCEEEEECCCcccCHHHHHhcCCCeeEEEeCchHHHHHHHHcCC
Confidence 334556789888777777777788888877765 6777777776655432 468999999999999998643
No 155
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=61.03 E-value=4.9 Score=38.90 Aligned_cols=12 Identities=33% Similarity=0.766 Sum_probs=10.5
Q ss_pred CCCcCCCCCCcc
Q 016198 297 HIPTCQKCNGVL 308 (393)
Q Consensus 297 ~iP~Cp~CGg~L 308 (393)
.++.||.||..|
T Consensus 220 ~iv~CP~CgRIL 231 (239)
T COG1579 220 EIVFCPYCGRIL 231 (239)
T ss_pred CCccCCccchHH
Confidence 689999999875
No 156
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=60.91 E-value=6.3 Score=46.12 Aligned_cols=20 Identities=35% Similarity=0.831 Sum_probs=15.1
Q ss_pred eeecccce-----eecCCCCcccch
Q 016198 224 ELHGTVYT-----VVCLDCGFSFCR 243 (393)
Q Consensus 224 elHGs~~~-----~~C~~C~~~~~~ 243 (393)
-|-||++. .+|.+|+..|.+
T Consensus 1241 Dl~GNLraFsrQ~~RC~kC~~kyRR 1265 (1337)
T PRK14714 1241 DLIGNLRAFSRQEFRCLKCGTKYRR 1265 (1337)
T ss_pred hhhhhhhhhhccceeecccCccccc
Confidence 45688875 599999988754
No 157
>PF04574 DUF592: Protein of unknown function (DUF592); InterPro: IPR007654 This N-terminal region is found in SIR2 proteins (IPR003000 from INTERPRO) and its homologues. Its function is uncharacterised.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0017136 NAD-dependent histone deacetylase activity, 0051287 NAD binding, 0006342 chromatin silencing, 0006355 regulation of transcription, DNA-dependent, 0006476 protein deacetylation; PDB: 2HJH_B.
Probab=59.49 E-value=7.9 Score=34.86 Aligned_cols=23 Identities=26% Similarity=0.637 Sum_probs=18.2
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEe
Q 016198 107 PSIEDINQLYQFFDNSAKLIVLT 129 (393)
Q Consensus 107 ~~~~~l~~l~~~i~~ak~IVVlT 129 (393)
+.-.+++.+.+.|++|++|+|+|
T Consensus 131 ~~f~Tid~~v~~lk~akkIlVlT 153 (153)
T PF04574_consen 131 PNFNTIDDVVDLLKSAKKILVLT 153 (153)
T ss_dssp TT--SHHHHHHHHHH-SSEEEEE
T ss_pred CCcCcHHHHHHHHHhcCceEEeC
Confidence 44578999999999999999998
No 158
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=59.44 E-value=5.1 Score=25.13 Aligned_cols=10 Identities=30% Similarity=0.800 Sum_probs=7.8
Q ss_pred CcCCCCCCcc
Q 016198 299 PTCQKCNGVL 308 (393)
Q Consensus 299 P~Cp~CGg~L 308 (393)
..||.||..|
T Consensus 17 ~fC~~CG~~L 26 (26)
T PF13248_consen 17 KFCPNCGAKL 26 (26)
T ss_pred ccChhhCCCC
Confidence 4699999765
No 159
>cd02751 MopB_DMSOR-like The MopB_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. Members of the MopB_DMSOR-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=59.22 E-value=22 Score=38.55 Aligned_cols=50 Identities=18% Similarity=0.313 Sum_probs=37.7
Q ss_pred hCCeEEEeccCcch-hh---------HHHHHHHHHhCCCeEEEECCCCCCCCC-cccEEEE
Q 016198 323 ECDAFLVLGSSLMT-MS---------AYRLVRAAHEAGSTIAIVNVGETRADD-LTTLKIS 372 (393)
Q Consensus 323 ~aDllLVvGTSl~V-~p---------~~~lv~~a~~~ga~li~IN~~~t~~d~-~~~l~I~ 372 (393)
.+|++|++|+.... .| ....+..++++|+++|.|++..+.... .+|..|.
T Consensus 169 ~ad~il~wG~N~~~~~~~~~~~~~~~~~~~~~~a~~~GakiivIDPr~s~ta~~~AD~~l~ 229 (609)
T cd02751 169 HSDLVVLFGANPLKTRQGGGGGPDHGSYYYLKQAKDAGVRFICIDPRYTDTAAVLAAEWIP 229 (609)
T ss_pred cCCEEEEECCCHHHhcCCCCCccCcchHHHHHHHHHCCCeEEEECCCCCccccccCCEEEC
Confidence 59999999987544 33 224556678889999999999888765 5777654
No 160
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=59.16 E-value=5.6 Score=33.98 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=13.5
Q ss_pred eeeecccceeecCCCCcccc
Q 016198 223 LELHGTVYTVVCLDCGFSFC 242 (393)
Q Consensus 223 ielHGs~~~~~C~~C~~~~~ 242 (393)
++++=--...+|.+|++.++
T Consensus 62 L~i~~~p~~~~C~~Cg~~~~ 81 (114)
T PRK03681 62 LHLEEQEAECWCETCQQYVT 81 (114)
T ss_pred EEEEeeCcEEEcccCCCeee
Confidence 44444455679999997654
No 161
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=58.88 E-value=5.7 Score=33.87 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=14.2
Q ss_pred eeeecccceeecCCCCcccc
Q 016198 223 LELHGTVYTVVCLDCGFSFC 242 (393)
Q Consensus 223 ielHGs~~~~~C~~C~~~~~ 242 (393)
++++=--...+|..|++.+.
T Consensus 62 L~I~~vp~~~~C~~Cg~~~~ 81 (113)
T PRK12380 62 LHIVYKPAQAWCWDCSQVVE 81 (113)
T ss_pred EEEEeeCcEEEcccCCCEEe
Confidence 55555556789999997654
No 162
>cd02774 MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists. NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH-quinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. The Nad11 subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evi
Probab=58.74 E-value=21 Score=36.49 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=31.0
Q ss_pred HHHHhhCCeEEEeccCcch-hhH--HHHHHHHHhCCCeEEEECCCC
Q 016198 318 MEAAKECDAFLVLGSSLMT-MSA--YRLVRAAHEAGSTIAIVNVGE 360 (393)
Q Consensus 318 ~~~~~~aDllLVvGTSl~V-~p~--~~lv~~a~~~ga~li~IN~~~ 360 (393)
.+.++++|++|+||+.+.. .|. .++-...++.|++++.|++..
T Consensus 143 l~die~ad~illiG~n~~~e~Pvl~~rlrka~~~~~~ki~vi~~~~ 188 (366)
T cd02774 143 LKNLDKSDLCLLIGSNLRVESPILNIRLRNRYNKGNKKIFVIGNKF 188 (366)
T ss_pred HHHHhhCCEEEEEcCCcchhhHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 4467899999999998876 444 233333435578999999766
No 163
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=58.27 E-value=3.4 Score=34.80 Aligned_cols=11 Identities=36% Similarity=0.709 Sum_probs=9.2
Q ss_pred eecCCCCcccc
Q 016198 232 VVCLDCGFSFC 242 (393)
Q Consensus 232 ~~C~~C~~~~~ 242 (393)
.+|++||+.|+
T Consensus 3 H~CtrCG~vf~ 13 (112)
T COG3364 3 HQCTRCGEVFD 13 (112)
T ss_pred ceecccccccc
Confidence 48999999875
No 164
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=58.02 E-value=7 Score=33.25 Aligned_cols=13 Identities=31% Similarity=0.833 Sum_probs=10.2
Q ss_pred CcCCCCCCccCCh
Q 016198 299 PTCQKCNGVLKPD 311 (393)
Q Consensus 299 P~Cp~CGg~LrP~ 311 (393)
..||+||....|.
T Consensus 27 ivCP~CG~~~~~~ 39 (108)
T PF09538_consen 27 IVCPKCGTEFPPE 39 (108)
T ss_pred ccCCCCCCccCcc
Confidence 4599999877764
No 165
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=57.07 E-value=30 Score=38.77 Aligned_cols=46 Identities=24% Similarity=0.319 Sum_probs=34.7
Q ss_pred HHHHhhCCeEEEeccCcch-hh-HHHHHHHHHhCCCeEEEECCCCCCC
Q 016198 318 MEAAKECDAFLVLGSSLMT-MS-AYRLVRAAHEAGSTIAIVNVGETRA 363 (393)
Q Consensus 318 ~~~~~~aDllLVvGTSl~V-~p-~~~lv~~a~~~ga~li~IN~~~t~~ 363 (393)
.+.+.++|++|++|+.... .| ....+..++++|+++|.|++..+..
T Consensus 365 ~~Di~~ad~Il~~G~N~~~~~p~~~~~i~~a~~~G~klividpr~t~~ 412 (776)
T PRK09129 365 IAELSNLDAVLVVGSNLRKEHPLLAARLRQAAKNGAKLSAINPVDDDF 412 (776)
T ss_pred HHHHHhCCEEEEEecCcchhcHHHHHHHHHHHHCCCeEEEecCCcccc
Confidence 4567899999999997543 44 3455566778899999999877653
No 166
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=57.03 E-value=24 Score=35.08 Aligned_cols=63 Identities=27% Similarity=0.347 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCC----CCCCCcccEEEECcH
Q 016198 312 DRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGE----TRADDLTTLKISARL 375 (393)
Q Consensus 312 ~~~~~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~----t~~d~~~~l~I~~d~ 375 (393)
.|.++..+...++|++||||+.-.... .+|.+-|.+.|.+-++|+... .-+.....+.|...+
T Consensus 201 nRQ~Avk~la~~~Dl~iVVG~~nSSNs-~rL~eiA~~~g~~aylId~~~ei~~~w~~~~~~VGvTAGA 267 (294)
T COG0761 201 NRQDAVKELAPEVDLVIVVGSKNSSNS-NRLAEIAKRHGKPAYLIDDAEEIDPEWLKGVKTVGVTAGA 267 (294)
T ss_pred hHHHHHHHHhhcCCEEEEECCCCCccH-HHHHHHHHHhCCCeEEeCChHhCCHHHhcCccEEEEecCC
Confidence 456666777889999999997443333 578888888899999998543 123334455566554
No 167
>TIGR02166 dmsA_ynfE anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family. Members of this family include known and probable dimethyl sulfoxide reductase (DMSO reductase) A chains. In E. coli, dmsA encodes the canonical anaerobic DMSO reductase A chain. The paralog ynfE, as part of ynfFGH expressed from a multicopy plasmid, could complement a dmsABC deletion, suggesting a similar function and some overlap in specificity, although YnfE could not substitute for DmsA in a mixed complex.
Probab=56.79 E-value=24 Score=39.50 Aligned_cols=54 Identities=9% Similarity=0.175 Sum_probs=39.0
Q ss_pred HHHhhCCeEEEeccCcch-hh----H-HHHHHHHHhCCCeEEEECCCCCCCC-CcccEEEE
Q 016198 319 EAAKECDAFLVLGSSLMT-MS----A-YRLVRAAHEAGSTIAIVNVGETRAD-DLTTLKIS 372 (393)
Q Consensus 319 ~~~~~aDllLVvGTSl~V-~p----~-~~lv~~a~~~ga~li~IN~~~t~~d-~~~~l~I~ 372 (393)
+.+.++|++|++|+...+ .+ . ..+.+.++++|+++|.|++..+... ..+|..|.
T Consensus 210 ~D~~~a~~il~~G~N~~~s~~~~~~~~~~~~~~~~~~G~kiivvDPr~t~taa~~Ad~~l~ 270 (797)
T TIGR02166 210 DDIENSKLVVMFGNNPAETRMSGGGQTYYFLQALEKSNARVIVIDPRYTDTVAGREDEWIP 270 (797)
T ss_pred HHHHhCCEEEEECCCHHHhcCCCcchHHHHHHHHHHCCCeEEEECCCCCccchhcCCEEEC
Confidence 456789999999998655 33 2 3455555567999999999988754 46676654
No 168
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=55.71 E-value=9.3 Score=28.19 Aligned_cols=12 Identities=33% Similarity=0.847 Sum_probs=10.0
Q ss_pred CCCcCCCCCCcc
Q 016198 297 HIPTCQKCNGVL 308 (393)
Q Consensus 297 ~iP~Cp~CGg~L 308 (393)
.+..||.||..|
T Consensus 45 ~i~~Cp~CgRiL 56 (56)
T PF02591_consen 45 EIVFCPNCGRIL 56 (56)
T ss_pred CeEECcCCCccC
Confidence 578999999865
No 169
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=54.56 E-value=32 Score=29.77 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=27.9
Q ss_pred HhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEE
Q 016198 321 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV 356 (393)
Q Consensus 321 ~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~I 356 (393)
++.-|+||++-+|-+....-..+++|+++|+++|-|
T Consensus 101 ~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIal 136 (138)
T PF13580_consen 101 IRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIAL 136 (138)
T ss_dssp --TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 688999999999998888889999999999998765
No 170
>PRK14990 anaerobic dimethyl sulfoxide reductase subunit A; Provisional
Probab=53.73 E-value=32 Score=38.67 Aligned_cols=54 Identities=9% Similarity=0.095 Sum_probs=38.3
Q ss_pred HHHhhCCeEEEeccCcch-hh----HHHHHHHHH-hCCCeEEEECCCCCCCC-CcccEEEE
Q 016198 319 EAAKECDAFLVLGSSLMT-MS----AYRLVRAAH-EAGSTIAIVNVGETRAD-DLTTLKIS 372 (393)
Q Consensus 319 ~~~~~aDllLVvGTSl~V-~p----~~~lv~~a~-~~ga~li~IN~~~t~~d-~~~~l~I~ 372 (393)
..+.++|++|++|+...+ .+ ....+..++ ++|+++|.|++..+... ..+|..|.
T Consensus 227 ~D~~~ad~il~~G~N~~~t~~~~~~~~~~~~~a~~~~G~klivIDPr~t~taa~~AD~~l~ 287 (814)
T PRK14990 227 SDIENSKLVVLFGNNPGETRMSGGGVTYYLEQARQKSNARMIIIDPRYTDTGAGREDEWIP 287 (814)
T ss_pred HHHhhCCEEEEECCChHHhcCCCCcHHHHHHHHHHHCCCeEEEECCCCCCcccccCCeEEC
Confidence 456789999999998654 22 233344444 57999999999988775 46777654
No 171
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=53.55 E-value=40 Score=27.92 Aligned_cols=56 Identities=13% Similarity=0.127 Sum_probs=42.4
Q ss_pred HHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECC-CCCCCCCcccEEEECcH
Q 016198 320 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNV-GETRADDLTTLKISARL 375 (393)
Q Consensus 320 ~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~-~~t~~d~~~~l~I~~d~ 375 (393)
.+.+-|++|++-.+-.+....++++.++++|++++.|=. ..+...+.++..|.-..
T Consensus 57 ~~~~~~~~i~iS~~g~~~~~~~~~~~a~~~g~~iv~iT~~~~~~l~~~~d~~i~~~~ 113 (139)
T cd05013 57 NLTPGDVVIAISFSGETKETVEAAEIAKERGAKVIAITDSANSPLAKLADIVLLVSS 113 (139)
T ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEcCCCCChhHHhcCEEEEcCC
Confidence 456788999998888888888899999999999876654 44566667777765433
No 172
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=53.53 E-value=11 Score=43.55 Aligned_cols=13 Identities=31% Similarity=0.700 Sum_probs=10.9
Q ss_pred CcCCCCCCccCCh
Q 016198 299 PTCQKCNGVLKPD 311 (393)
Q Consensus 299 P~Cp~CGg~LrP~ 311 (393)
-+||.|||.+.+-
T Consensus 839 ~~~~~~~~~~~~~ 851 (1006)
T PRK12775 839 GMCPACGGKLQAL 851 (1006)
T ss_pred CcCcccccchhhh
Confidence 4799999988765
No 173
>PRK13532 nitrate reductase catalytic subunit; Provisional
Probab=53.48 E-value=25 Score=39.73 Aligned_cols=54 Identities=20% Similarity=0.308 Sum_probs=37.6
Q ss_pred HHHhhCCeEEEeccCcch-hhH--HHHHHHH-HhCCCeEEEECCCCCCCCCcccEEEE
Q 016198 319 EAAKECDAFLVLGSSLMT-MSA--YRLVRAA-HEAGSTIAIVNVGETRADDLTTLKIS 372 (393)
Q Consensus 319 ~~~~~aDllLVvGTSl~V-~p~--~~lv~~a-~~~ga~li~IN~~~t~~d~~~~l~I~ 372 (393)
+.+..+|++|++|+.... .|. .++.+.. +++|+++|.|++..+.....+|..|.
T Consensus 202 ~Di~~a~~il~~G~Np~~~~p~~~~~i~~a~~~~~G~kiiviDPr~t~ta~~ad~~l~ 259 (830)
T PRK13532 202 DDIEAADAFVLWGSNMAEMHPILWSRVTDRRLSNPDVKVAVLSTFEHRSFELADNGII 259 (830)
T ss_pred HHHHhCCEEEEECCCchhcCcHHHHHHHHHHhcCCCCeEEEECCCCCchhHhcCeeec
Confidence 356899999999987644 332 3443322 24699999999988777667776644
No 174
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=53.42 E-value=9.7 Score=33.36 Aligned_cols=15 Identities=7% Similarity=0.122 Sum_probs=11.4
Q ss_pred CCCcCCCCCCccCCh
Q 016198 297 HIPTCQKCNGVLKPD 311 (393)
Q Consensus 297 ~iP~Cp~CGg~LrP~ 311 (393)
....||+||....|.
T Consensus 25 ~p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 25 RPAVSPYTGEQFPPE 39 (129)
T ss_pred CCccCCCcCCccCcc
Confidence 356799999877664
No 175
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=52.90 E-value=12 Score=27.16 Aligned_cols=13 Identities=23% Similarity=0.692 Sum_probs=10.6
Q ss_pred eeecCCCCcccch
Q 016198 231 TVVCLDCGFSFCR 243 (393)
Q Consensus 231 ~~~C~~C~~~~~~ 243 (393)
+.+|..|++.|+.
T Consensus 1 ky~C~~CgyvYd~ 13 (47)
T PF00301_consen 1 KYQCPVCGYVYDP 13 (47)
T ss_dssp EEEETTTSBEEET
T ss_pred CcCCCCCCEEEcC
Confidence 4689999998864
No 176
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=52.62 E-value=17 Score=26.63 Aligned_cols=12 Identities=25% Similarity=0.692 Sum_probs=10.0
Q ss_pred eecCCCCcccch
Q 016198 232 VVCLDCGFSFCR 243 (393)
Q Consensus 232 ~~C~~C~~~~~~ 243 (393)
.+|..|++.|+.
T Consensus 2 y~C~~CgyiYd~ 13 (50)
T cd00730 2 YECRICGYIYDP 13 (50)
T ss_pred cCCCCCCeEECC
Confidence 589999998863
No 177
>PRK14715 DNA polymerase II large subunit; Provisional
Probab=52.61 E-value=11 Score=44.62 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=16.9
Q ss_pred CcCCCCCCccCCh-------HHHHHHHHHHhhCC
Q 016198 299 PTCQKCNGVLKPD-------DRADKAMEAAKECD 325 (393)
Q Consensus 299 P~Cp~CGg~LrP~-------~~~~~a~~~~~~aD 325 (393)
-+||+|||.+-+. ..++-+....++-+
T Consensus 1558 G~C~kCGg~~ilTV~kGsv~KYl~~a~~~~~~y~ 1591 (1627)
T PRK14715 1558 GKCPKCGSKLILTVSKGAVEKYMPVAKMMAEKYN 1591 (1627)
T ss_pred CcCcccCCeEEEEEecchHHHHHHHHHHHHHHcC
Confidence 4799999977766 33444444444433
No 178
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=52.24 E-value=30 Score=42.39 Aligned_cols=63 Identities=14% Similarity=0.232 Sum_probs=44.2
Q ss_pred HHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHH
Q 016198 320 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLD 384 (393)
Q Consensus 320 ~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~ 384 (393)
.+.++|+||+||+.+............. ...+|.|+..+...+. ..++.|.+|+..+|..|++
T Consensus 595 ~~~~aDlVl~iG~rl~s~~~t~~~~~~~--~~~~I~ID~d~~~i~~~~~~~~~i~~D~~~~l~~L~~ 659 (1655)
T PLN02980 595 NWIQFDVVIQIGSRITSKRVSQMLEKCF--PFSYILVDKHPCRHDPSHLVTHRVQSNIVQFADCLLK 659 (1655)
T ss_pred ccCCCCEEEEeCCccccHHHHHHHHhCC--CCeEEEECCCCCccCCcccceEEEEeCHHHHHHHhhh
Confidence 3578999999999986332222222111 2358999998877654 4568899999999988865
No 179
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=51.75 E-value=40 Score=38.31 Aligned_cols=47 Identities=19% Similarity=0.126 Sum_probs=34.4
Q ss_pred HHHHHhhCCeEEEeccCcch-hhH-HHHHHHH-HhCCCeEEEECCCCCCC
Q 016198 317 AMEAAKECDAFLVLGSSLMT-MSA-YRLVRAA-HEAGSTIAIVNVGETRA 363 (393)
Q Consensus 317 a~~~~~~aDllLVvGTSl~V-~p~-~~lv~~a-~~~ga~li~IN~~~t~~ 363 (393)
..+.+.++|++|++|+-+.. .|. ...+..| +++|+++|.|++-.+..
T Consensus 364 sl~DI~~AD~IlviGsN~~e~hPvl~~~I~~A~k~~gaklIvidPr~~~~ 413 (819)
T PRK08493 364 NLEDIKTSDFVVVAGSALKTDNPLLRYAINNALKMNKASGLYFHPIKDNV 413 (819)
T ss_pred CHHHHhhCCEEEEECCChhhhCHHHHHHHHHHHHhCCCeEEEEecCCchh
Confidence 35567899999999997655 664 4445555 34789999999877654
No 180
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=51.68 E-value=60 Score=28.63 Aligned_cols=52 Identities=13% Similarity=0.229 Sum_probs=42.0
Q ss_pred HhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECC-CCCCCCCcccEEEE
Q 016198 321 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNV-GETRADDLTTLKIS 372 (393)
Q Consensus 321 ~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~-~~t~~d~~~~l~I~ 372 (393)
.++-|++|++-.|..+.-....++.++++|+++|.|=- ...+..+.+|+.|.
T Consensus 77 ~~~~D~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~~~ad~~l~ 129 (154)
T TIGR00441 77 GQKGDVLLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKDGGKMAGLADIELR 129 (154)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEE
Confidence 47789999999998888888999999999999877753 45666677777654
No 181
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.64 E-value=5.9 Score=31.67 Aligned_cols=29 Identities=24% Similarity=0.510 Sum_probs=18.5
Q ss_pred CCcCCCCCCccCChHHHHHHHHHHhhCCeEEEeccCcch
Q 016198 298 IPTCQKCNGVLKPDDRADKAMEAAKECDAFLVLGSSLMT 336 (393)
Q Consensus 298 iP~Cp~CGg~LrP~~~~~~a~~~~~~aDllLVvGTSl~V 336 (393)
.-.||.||+.||- .-.+--++.=|+++-|
T Consensus 33 lt~ce~c~a~~kk----------~l~~vgi~fKGSGfYv 61 (82)
T COG2331 33 LTTCEECGARLKK----------LLNAVGIVFKGSGFYV 61 (82)
T ss_pred cccChhhChHHHH----------hhccceEEEecceEEE
Confidence 4579999998761 2234455566777644
No 182
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=50.94 E-value=37 Score=32.62 Aligned_cols=55 Identities=18% Similarity=0.235 Sum_probs=44.3
Q ss_pred HHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCCcccEEEEC
Q 016198 319 EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISA 373 (393)
Q Consensus 319 ~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~~ 373 (393)
..+++-|++|++..|..+.-..+.++.|++.|+++|.|=-...++...+|+.|.-
T Consensus 171 ~~~~~~D~vI~iS~sG~t~~~~~~~~~ak~~g~~vI~IT~~~s~l~~~ad~~l~~ 225 (284)
T PRK11302 171 MNSSDGDVVVLISHTGRTKSLVELAQLARENGATVIAITSAGSPLAREATLALTL 225 (284)
T ss_pred HhCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEECCCCChhHHhCCEEEec
Confidence 3457889999999888888888999999999999988875556666677777653
No 183
>TIGR01706 NAPA periplasmic nitrate reductase, large subunit. The enzymes from Alicagenes eutrophus and Paracoccus pantotrophus have been characterized. In E. coli (as well as other organisms) this gene is part of a large nitrate reduction operon (napFDAGHBC).
Probab=50.84 E-value=28 Score=39.45 Aligned_cols=53 Identities=19% Similarity=0.314 Sum_probs=37.4
Q ss_pred HHHhhCCeEEEeccCcch-hhH--HHHHHHHH--hCCCeEEEECCCCCCCCCcccEEEE
Q 016198 319 EAAKECDAFLVLGSSLMT-MSA--YRLVRAAH--EAGSTIAIVNVGETRADDLTTLKIS 372 (393)
Q Consensus 319 ~~~~~aDllLVvGTSl~V-~p~--~~lv~~a~--~~ga~li~IN~~~t~~d~~~~l~I~ 372 (393)
+.+.++|++|++|+.... .|. .++.. ++ ++|+++|.|++..+.....+|.+|.
T Consensus 202 ~Di~~ad~il~~G~Np~~~~p~~~~~i~~-a~~~~~GakliviDPr~t~ta~~Ad~~l~ 259 (830)
T TIGR01706 202 DDFEAADAFVLWGSNMAEMHPILWTRVTD-RRLSHPKVKVVVLSTFTHRSFDLADIGII 259 (830)
T ss_pred hHHhhCCEEEEEcCCcchhCCHHHHHHHH-HHhccCCCEEEEECCCCCchhHHhCeeec
Confidence 456899999999997654 332 33332 33 3699999999988877667776644
No 184
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=49.79 E-value=30 Score=31.07 Aligned_cols=53 Identities=15% Similarity=0.219 Sum_probs=41.4
Q ss_pred HhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECC-CCCCCCCcccEEEEC
Q 016198 321 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNV-GETRADDLTTLKISA 373 (393)
Q Consensus 321 ~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~-~~t~~d~~~~l~I~~ 373 (393)
+.+-|++|++.-|..+.-...+++.+++.|+++|.|-- ..++..+.+++.|.-
T Consensus 73 ~~~~D~vI~iS~sG~t~~~i~~~~~ak~~g~~iI~IT~~~~s~la~~ad~~l~~ 126 (179)
T cd05005 73 IGPGDLLIAISGSGETSSVVNAAEKAKKAGAKVVLITSNPDSPLAKLADVVVVI 126 (179)
T ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEe
Confidence 46889999999999888888999999999999876643 455666666666543
No 185
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=49.71 E-value=14 Score=25.18 Aligned_cols=12 Identities=25% Similarity=0.764 Sum_probs=9.6
Q ss_pred eeecCCCCcccc
Q 016198 231 TVVCLDCGFSFC 242 (393)
Q Consensus 231 ~~~C~~C~~~~~ 242 (393)
+..|.+|+..|.
T Consensus 1 Rr~C~~Cg~~Yh 12 (36)
T PF05191_consen 1 RRICPKCGRIYH 12 (36)
T ss_dssp EEEETTTTEEEE
T ss_pred CcCcCCCCCccc
Confidence 357999998875
No 186
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=49.52 E-value=36 Score=33.32 Aligned_cols=57 Identities=12% Similarity=0.156 Sum_probs=47.2
Q ss_pred HHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCC-CCCCCCcccEEEEC
Q 016198 317 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVG-ETRADDLTTLKISA 373 (393)
Q Consensus 317 a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~-~t~~d~~~~l~I~~ 373 (393)
....+.+-|++|++.-|-.+.-....++.|+++|+++|-|--. .++..+.+|+.+..
T Consensus 171 ~~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~~~spla~~Ad~~L~~ 228 (281)
T COG1737 171 QLALLTPGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDSADSPLAKLADIVLLV 228 (281)
T ss_pred HHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEcCCCCCchhhhhceEEec
Confidence 4456789999999999999988889999999999998887655 67888888877654
No 187
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=49.35 E-value=6.3 Score=35.67 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=15.9
Q ss_pred CCC-cCCCCCCccCCh--HHHHHHHHHHh
Q 016198 297 HIP-TCQKCNGVLKPD--DRADKAMEAAK 322 (393)
Q Consensus 297 ~iP-~Cp~CGg~LrP~--~~~~~a~~~~~ 322 (393)
..| .|.+||.+ -|| ..++.|.+.++
T Consensus 66 ~~PsYC~~CGkp-yPWt~~~L~aa~el~e 93 (158)
T PF10083_consen 66 EAPSYCHNCGKP-YPWTENALEAANELIE 93 (158)
T ss_pred CCChhHHhCCCC-CchHHHHHHHHHHHHH
Confidence 344 49999987 577 44555555544
No 188
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=49.33 E-value=32 Score=34.88 Aligned_cols=51 Identities=14% Similarity=0.248 Sum_probs=35.2
Q ss_pred hhCCeEEEeccCcch-hhHH--HHHHHH-------HhCCCeEEEECCCCCCCCCcccEEEE
Q 016198 322 KECDAFLVLGSSLMT-MSAY--RLVRAA-------HEAGSTIAIVNVGETRADDLTTLKIS 372 (393)
Q Consensus 322 ~~aDllLVvGTSl~V-~p~~--~lv~~a-------~~~ga~li~IN~~~t~~d~~~~l~I~ 372 (393)
+++|++|++|+.... .|.. ++...+ .++|++++.|++..+.....+|..|.
T Consensus 130 ~~ad~il~~G~n~~~~~p~~~~~~~~~~~~~~~~~~~~g~kli~idp~~t~ta~~Ad~~l~ 190 (415)
T cd02761 130 NRADVIVYWGTNPMHAHPRHMSRYSVFPRGFFREGGREDRTLIVVDPRKSDTAKLADIHLQ 190 (415)
T ss_pred hcCCEEEEEcCCccccccHHhhhhhhhhhhhccccCCCCCEEEEEcCCCcchhhhcceEEe
Confidence 479999999987655 4432 221111 14688999999998887777776654
No 189
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=48.94 E-value=42 Score=30.84 Aligned_cols=24 Identities=4% Similarity=0.110 Sum_probs=21.2
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCcC
Q 016198 111 DINQLYQFFDNSAKLIVLTGAGIS 134 (393)
Q Consensus 111 ~l~~l~~~i~~ak~IVVlTGAGIS 134 (393)
+-+.++++|++|++-|++.|.|+.
T Consensus 23 ~p~~aa~lI~~AKrPlIivG~ga~ 46 (171)
T PRK00945 23 SPKIAAMMIKKAKRPLLVVGSLLL 46 (171)
T ss_pred CHHHHHHHHHhCCCcEEEECcCcc
Confidence 346889999999999999999986
No 190
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=48.77 E-value=14 Score=26.31 Aligned_cols=11 Identities=18% Similarity=0.655 Sum_probs=8.3
Q ss_pred CCCcCCCCCCc
Q 016198 297 HIPTCQKCNGV 307 (393)
Q Consensus 297 ~iP~Cp~CGg~ 307 (393)
...+||.||..
T Consensus 18 ~~irC~~CG~r 28 (44)
T smart00659 18 DVVRCRECGYR 28 (44)
T ss_pred CceECCCCCce
Confidence 34689999973
No 191
>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins. Its exact function has not, as yet, been defined. ; PDB: 2QH1_B 1PVM_B.
Probab=48.68 E-value=6.5 Score=26.10 Aligned_cols=12 Identities=58% Similarity=1.248 Sum_probs=8.3
Q ss_pred cCCCCC-CccCCh
Q 016198 300 TCQKCN-GVLKPD 311 (393)
Q Consensus 300 ~Cp~CG-g~LrP~ 311 (393)
.||+|| |.|.|-
T Consensus 3 lcpkcgvgvl~pv 15 (36)
T PF09151_consen 3 LCPKCGVGVLEPV 15 (36)
T ss_dssp B-TTTSSSBEEEE
T ss_pred cCCccCceEEEEe
Confidence 599999 677764
No 192
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=48.20 E-value=87 Score=26.36 Aligned_cols=65 Identities=12% Similarity=-0.003 Sum_probs=44.2
Q ss_pred hhCCeEEEeccCcchhhHHHHHHHHHhCC--CeEEEECCCCCCC------CCcccEEEECcHHHHHHHHHHhC
Q 016198 322 KECDAFLVLGSSLMTMSAYRLVRAAHEAG--STIAIVNVGETRA------DDLTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 322 ~~aDllLVvGTSl~V~p~~~lv~~a~~~g--a~li~IN~~~t~~------d~~~~l~I~~d~~~vL~~L~~~~ 386 (393)
.+.|++.+=..+.+...+..+++..++.+ ++++.-....+.. ...+|+++.|+.+..+++|++.+
T Consensus 38 ~~pdiv~~S~~~~~~~~~~~~~~~ik~~~p~~~iv~GG~~~t~~p~~~~~~~~~D~vv~GEgE~~~~~l~~~l 110 (127)
T cd02068 38 LKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVVVGGPHATFFPEEILEEPGVDFVVIGEGEETFLKLLEEL 110 (127)
T ss_pred cCCCEEEEeeccccHHHHHHHHHHHHHHCCCCEEEECCcchhhCHHHHhcCCCCCEEEECCcHHHHHHHHHHH
Confidence 57788766544444455666777766654 6666655544322 34588999999999999999865
No 193
>TIGR01580 narG respiratory nitrate reductase, alpha subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the alpha subunit for nitrate reductase I (narG) and nitrate reductase II (narZ) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model The seed members used to make the model include Nitrate reductases from Pseudomonas fluorescens, E.coli and B.subtilis. All seed members are experimentally characterized. Some unpublished nitrate reductases, that are shorter sequences, and probably fragments fall in between the noise and trusted cutoffs. P
Probab=47.99 E-value=32 Score=40.72 Aligned_cols=52 Identities=10% Similarity=0.116 Sum_probs=41.6
Q ss_pred HhhCCeEEEeccCcch--hhHHHHHHHHHhCCCeEEEECCCCCCCCCcccEEEE
Q 016198 321 AKECDAFLVLGSSLMT--MSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKIS 372 (393)
Q Consensus 321 ~~~aDllLVvGTSl~V--~p~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~ 372 (393)
+..++++|+.|+...+ .|....+..++.+|+++|.|++.-+.....+|..|.
T Consensus 243 ~~nS~~II~WGsN~~~T~~p~a~~l~eAr~rGaKvVVVDPr~t~tA~~AD~WLp 296 (1235)
T TIGR01580 243 WYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAITPDYAEIAKLCDLWLA 296 (1235)
T ss_pred hhcCCEEEEECCChhhhcchhHHHHHHHHHcCCeEEEEcCCCChhhHhhCEEeC
Confidence 4589999999998644 456677777888999999999998887777776643
No 194
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=47.78 E-value=50 Score=32.75 Aligned_cols=48 Identities=29% Similarity=0.426 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCC
Q 016198 312 DRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGE 360 (393)
Q Consensus 312 ~~~~~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~ 360 (393)
.|.+++.+..+++|++||||..-. .--.+|.+.+++.|.+.+.|.-..
T Consensus 198 ~RQ~a~~~La~~vD~miVIGg~~S-sNT~kL~eia~~~~~~t~~Ie~~~ 245 (281)
T PF02401_consen 198 NRQEAARELAKEVDAMIVIGGKNS-SNTRKLAEIAKEHGKPTYHIETAD 245 (281)
T ss_dssp HHHHHHHHHHCCSSEEEEES-TT--HHHHHHHHHHHHCTTCEEEESSGG
T ss_pred HHHHHHHHHHhhCCEEEEecCCCC-ccHHHHHHHHHHhCCCEEEeCCcc
Confidence 577788888899999999996443 223567777778888999998543
No 195
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=47.34 E-value=13 Score=32.79 Aligned_cols=21 Identities=14% Similarity=0.411 Sum_probs=14.3
Q ss_pred eeeecccceeecCCCCcccch
Q 016198 223 LELHGTVYTVVCLDCGFSFCR 243 (393)
Q Consensus 223 ielHGs~~~~~C~~C~~~~~~ 243 (393)
+++.=--..+.|..|++.+..
T Consensus 62 L~i~~~p~~~~C~~CG~~~~~ 82 (135)
T PRK03824 62 IIFEEEEAVLKCRNCGNEWSL 82 (135)
T ss_pred EEEEecceEEECCCCCCEEec
Confidence 444444457899999987654
No 196
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=46.89 E-value=12 Score=32.02 Aligned_cols=20 Identities=20% Similarity=0.418 Sum_probs=13.7
Q ss_pred eeeecccceeecCCCCcccc
Q 016198 223 LELHGTVYTVVCLDCGFSFC 242 (393)
Q Consensus 223 ielHGs~~~~~C~~C~~~~~ 242 (393)
++++=--...+|.+|++.+.
T Consensus 62 L~I~~~p~~~~C~~Cg~~~~ 81 (115)
T TIGR00100 62 LNIEDEPVECECEDCSEEVS 81 (115)
T ss_pred EEEEeeCcEEEcccCCCEEe
Confidence 44444455679999997654
No 197
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=46.81 E-value=20 Score=29.74 Aligned_cols=54 Identities=20% Similarity=0.274 Sum_probs=41.7
Q ss_pred HHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECC-CCCCCCCcccEEEE
Q 016198 319 EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNV-GETRADDLTTLKIS 372 (393)
Q Consensus 319 ~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~-~~t~~d~~~~l~I~ 372 (393)
..+++-|++|++-.|-.+....+.++.++++|+++|.|=- ...+..+.+|..|.
T Consensus 49 ~~~~~~d~vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~ad~~l~ 103 (131)
T PF01380_consen 49 ENLDPDDLVIIISYSGETRELIELLRFAKERGAPVILITSNSESPLARLADIVLY 103 (131)
T ss_dssp GGCSTTEEEEEEESSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEEE
T ss_pred ccccccceeEeeeccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhhhCCEEEE
Confidence 3456778999999899999999999999999999877764 44555556666554
No 198
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=46.81 E-value=42 Score=25.67 Aligned_cols=39 Identities=18% Similarity=0.178 Sum_probs=31.9
Q ss_pred HHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEEC
Q 016198 319 EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVN 357 (393)
Q Consensus 319 ~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN 357 (393)
..+++-|+++++-.|-.+.-...+++.++++|++++.|=
T Consensus 43 ~~~~~~d~~i~iS~sg~t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 43 SLLRKGDVVIALSYSGRTEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred hcCCCCCEEEEEECCCCCHHHHHHHHHHHHcCCeEEEEe
Confidence 456788999999877777777888899999999987763
No 199
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=45.99 E-value=1.5e+02 Score=26.57 Aligned_cols=69 Identities=20% Similarity=0.214 Sum_probs=47.7
Q ss_pred HHHHHHhhCCeEEEeccCcch-hhHHHHHHHHHhCCCeEEEECCCCC--------------CCCCcccEEEECcHHHHHH
Q 016198 316 KAMEAAKECDAFLVLGSSLMT-MSAYRLVRAAHEAGSTIAIVNVGET--------------RADDLTTLKISARLGEILP 380 (393)
Q Consensus 316 ~a~~~~~~aDllLVvGTSl~V-~p~~~lv~~a~~~ga~li~IN~~~t--------------~~d~~~~l~I~~d~~~vL~ 380 (393)
...+.++++-.+-|||-|-+- .|.++...+..++|-+++-||++-. .+++..|++--=.-.+.++
T Consensus 8 ~i~~iL~~~K~IAvVG~S~~P~r~sy~V~kyL~~~GY~ViPVNP~~~~~eiLG~k~y~sL~dIpe~IDiVdvFR~~e~~~ 87 (140)
T COG1832 8 DIAEILKSAKTIAVVGASDKPDRPSYRVAKYLQQKGYRVIPVNPKLAGEEILGEKVYPSLADIPEPIDIVDVFRRSEAAP 87 (140)
T ss_pred HHHHHHHhCceEEEEecCCCCCccHHHHHHHHHHCCCEEEeeCcccchHHhcCchhhhcHHhCCCCCcEEEEecChhhhH
Confidence 344567888999999988875 7777888888899999999999421 2244556654334445555
Q ss_pred HHHH
Q 016198 381 RVLD 384 (393)
Q Consensus 381 ~L~~ 384 (393)
++++
T Consensus 88 ~i~~ 91 (140)
T COG1832 88 EVAR 91 (140)
T ss_pred HHHH
Confidence 5443
No 200
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=45.36 E-value=11 Score=32.19 Aligned_cols=25 Identities=16% Similarity=0.458 Sum_probs=20.5
Q ss_pred HHHHHHHHHcCCcEEEEeCCCcCcc
Q 016198 112 INQLYQFFDNSAKLIVLTGAGISTE 136 (393)
Q Consensus 112 l~~l~~~i~~ak~IVVlTGAGISas 136 (393)
|++++++|++|++.+|++|.|+..+
T Consensus 1 i~~~~~~L~~A~rP~il~G~g~~~~ 25 (137)
T PF00205_consen 1 IDEAADLLSSAKRPVILAGRGARRS 25 (137)
T ss_dssp HHHHHHHHHH-SSEEEEE-HHHHHT
T ss_pred CHHHHHHHHhCCCEEEEEcCCcChh
Confidence 5789999999999999999998844
No 201
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=45.30 E-value=54 Score=32.51 Aligned_cols=46 Identities=35% Similarity=0.464 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhhCCeEEEecc--CcchhhHHHHHHHHHhCCCeEEEECCCC
Q 016198 312 DRADKAMEAAKECDAFLVLGS--SLMTMSAYRLVRAAHEAGSTIAIVNVGE 360 (393)
Q Consensus 312 ~~~~~a~~~~~~aDllLVvGT--Sl~V~p~~~lv~~a~~~ga~li~IN~~~ 360 (393)
.|.+++.+...++|++||||. |-++ .+|++-+.+.|.+.+.|....
T Consensus 197 ~RQ~a~~~la~~vD~miVVGg~nSsNT---~rL~ei~~~~~~~t~~Ie~~~ 244 (280)
T TIGR00216 197 NRQDAVKELAPEVDLMIVIGGKNSSNT---TRLYEIAEEHGPPSYLIETAE 244 (280)
T ss_pred HHHHHHHHHHhhCCEEEEECCCCCchH---HHHHHHHHHhCCCEEEECChH
Confidence 677888888999999999996 4444 466666667788888888543
No 202
>PRK02947 hypothetical protein; Provisional
Probab=44.44 E-value=60 Score=31.16 Aligned_cols=53 Identities=15% Similarity=0.220 Sum_probs=42.4
Q ss_pred HHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCC------------CCCCCcccEEEE
Q 016198 320 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGE------------TRADDLTTLKIS 372 (393)
Q Consensus 320 ~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~------------t~~d~~~~l~I~ 372 (393)
.+.+-|++|++-.|-.+.-...+++.++++|+++|.|=-.+ .++.+.+|++|.
T Consensus 103 ~~~~~Dv~i~iS~sG~t~~~i~~~~~a~~~g~~vI~iT~~~~s~~~~~~h~~gs~l~~~ad~~l~ 167 (246)
T PRK02947 103 DIRPGDVLIVVSNSGRNPVPIEMALEAKERGAKVIAVTSLAYSASVASRHSSGKRLAEVADVVLD 167 (246)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEcCCcccccccccCCCcCchhHhCCEEEE
Confidence 46788999999988888888899999999999988885543 355566777764
No 203
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=44.39 E-value=11 Score=31.92 Aligned_cols=21 Identities=33% Similarity=0.623 Sum_probs=13.7
Q ss_pred eeeecccceeecCCCCcccch
Q 016198 223 LELHGTVYTVVCLDCGFSFCR 243 (393)
Q Consensus 223 ielHGs~~~~~C~~C~~~~~~ 243 (393)
++++=--...+|..|++.+..
T Consensus 62 L~Ie~~p~~~~C~~Cg~~~~~ 82 (113)
T PF01155_consen 62 LEIEEVPARARCRDCGHEFEP 82 (113)
T ss_dssp EEEEEE--EEEETTTS-EEEC
T ss_pred EEEEecCCcEECCCCCCEEec
Confidence 666666667899999988753
No 204
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=44.34 E-value=70 Score=35.61 Aligned_cols=45 Identities=22% Similarity=0.319 Sum_probs=31.8
Q ss_pred HHHHhhCCeEEEeccCcch-hhH-HHHHHHHHhCC-CeEEEECCCCCC
Q 016198 318 MEAAKECDAFLVLGSSLMT-MSA-YRLVRAAHEAG-STIAIVNVGETR 362 (393)
Q Consensus 318 ~~~~~~aDllLVvGTSl~V-~p~-~~lv~~a~~~g-a~li~IN~~~t~ 362 (393)
.+.++++|++|++|+.... .|. ...++.+.++| ++++.|++..+.
T Consensus 359 i~dIe~AD~IlliG~Np~~eaPvl~~rirka~~~g~~kIivIdpr~~~ 406 (687)
T PRK09130 359 IAGIEEADAILLIGANPRFEAPVLNARIRKRWRAGGFKIAVIGEQADL 406 (687)
T ss_pred HHHHHhCCEEEEEccCcccccHHHHHHHHHHHHcCCCeEEEEcCcccc
Confidence 4567899999999998754 443 33345555566 599999987544
No 205
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=43.77 E-value=26 Score=39.69 Aligned_cols=41 Identities=24% Similarity=0.225 Sum_probs=31.1
Q ss_pred HHHhhCCeEEEeccCcch-hh-HHHHHHHHHhCCCeEEEECCC
Q 016198 319 EAAKECDAFLVLGSSLMT-MS-AYRLVRAAHEAGSTIAIVNVG 359 (393)
Q Consensus 319 ~~~~~aDllLVvGTSl~V-~p-~~~lv~~a~~~ga~li~IN~~ 359 (393)
+.+.++|++|++|+.+.. .| ....+++|.++|++++.|++.
T Consensus 367 ~di~~ad~Ilv~G~N~~~~~p~~~~~i~~a~~~gaklividpr 409 (847)
T PRK08166 367 REIESYDAVLVLGEDLTQTAARVALAVRQAVKGKAREMAAAQK 409 (847)
T ss_pred HHHHhCCEEEEEeCChHHhhHHHHHHHHHHHHcCCceEeeccc
Confidence 456789999999998754 44 445566777889988888875
No 206
>PRK15482 transcriptional regulator MurR; Provisional
Probab=43.49 E-value=51 Score=31.94 Aligned_cols=57 Identities=16% Similarity=0.154 Sum_probs=45.4
Q ss_pred HHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCC-CCCCCCcccEEEECcH
Q 016198 319 EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVG-ETRADDLTTLKISARL 375 (393)
Q Consensus 319 ~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~-~t~~d~~~~l~I~~d~ 375 (393)
..+.+-|++|++.-|..+.-....++.|+++|+++|.|--. .++....+|+.|....
T Consensus 178 ~~~~~~Dv~i~iS~sg~t~~~~~~~~~a~~~g~~iI~IT~~~~s~la~~ad~~l~~~~ 235 (285)
T PRK15482 178 QALKKGDVQIAISYSGSKKEIVLCAEAARKQGATVIAITSLADSPLRRLAHFTLDTVS 235 (285)
T ss_pred hcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchHHhCCEEEEcCC
Confidence 35678899999999999999999999999999998877644 4666677777765433
No 207
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=43.45 E-value=30 Score=41.72 Aligned_cols=12 Identities=50% Similarity=0.969 Sum_probs=10.5
Q ss_pred cCCCCCCccCCh
Q 016198 300 TCQKCNGVLKPD 311 (393)
Q Consensus 300 ~Cp~CGg~LrP~ 311 (393)
.||+||..|+-|
T Consensus 935 ~Cp~Cg~~~~kd 946 (1437)
T PRK00448 935 DCPKCGTKLKKD 946 (1437)
T ss_pred cCcccccccccc
Confidence 599999999876
No 208
>PRK08197 threonine synthase; Validated
Probab=43.38 E-value=13 Score=38.22 Aligned_cols=14 Identities=21% Similarity=0.586 Sum_probs=11.0
Q ss_pred ceeecCCCCcccch
Q 016198 230 YTVVCLDCGFSFCR 243 (393)
Q Consensus 230 ~~~~C~~C~~~~~~ 243 (393)
..++|..|++.|+.
T Consensus 6 ~~~~C~~Cg~~~~~ 19 (394)
T PRK08197 6 SHLECSKCGETYDA 19 (394)
T ss_pred eEEEECCCCCCCCC
Confidence 35799999988764
No 209
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=43.28 E-value=16 Score=33.42 Aligned_cols=11 Identities=36% Similarity=0.960 Sum_probs=9.3
Q ss_pred eeecCCCCccc
Q 016198 231 TVVCLDCGFSF 241 (393)
Q Consensus 231 ~~~C~~C~~~~ 241 (393)
.++|..||+..
T Consensus 134 ~~vC~vCGy~~ 144 (166)
T COG1592 134 VWVCPVCGYTH 144 (166)
T ss_pred EEEcCCCCCcc
Confidence 67999999864
No 210
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=43.26 E-value=11 Score=31.05 Aligned_cols=16 Identities=38% Similarity=0.692 Sum_probs=12.6
Q ss_pred cCCcEEEEeCCCcCcc
Q 016198 121 NSAKLIVLTGAGISTE 136 (393)
Q Consensus 121 ~ak~IVVlTGAGISas 136 (393)
+.++|++.+|+|+|++
T Consensus 2 ~~~~ILl~C~~G~sSS 17 (95)
T TIGR00853 2 NETNILLLCAAGMSTS 17 (95)
T ss_pred CccEEEEECCCchhHH
Confidence 3578899999998865
No 211
>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only]
Probab=43.05 E-value=15 Score=34.06 Aligned_cols=11 Identities=27% Similarity=0.570 Sum_probs=9.0
Q ss_pred eecCCCCcccc
Q 016198 232 VVCLDCGFSFC 242 (393)
Q Consensus 232 ~~C~~C~~~~~ 242 (393)
.+|..|+..|+
T Consensus 140 ~rC~GC~~~f~ 150 (177)
T COG1439 140 LRCHGCKRIFP 150 (177)
T ss_pred EEEecCceecC
Confidence 58999998765
No 212
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=42.79 E-value=16 Score=23.11 Aligned_cols=9 Identities=22% Similarity=0.523 Sum_probs=6.9
Q ss_pred CcCCCCCCc
Q 016198 299 PTCQKCNGV 307 (393)
Q Consensus 299 P~Cp~CGg~ 307 (393)
-.||+||-.
T Consensus 15 ~~Cp~CG~~ 23 (26)
T PF10571_consen 15 KFCPHCGYD 23 (26)
T ss_pred CcCCCCCCC
Confidence 469999954
No 213
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=42.74 E-value=13 Score=22.72 Aligned_cols=12 Identities=25% Similarity=0.797 Sum_probs=9.0
Q ss_pred cCCCCCCccCCh
Q 016198 300 TCQKCNGVLKPD 311 (393)
Q Consensus 300 ~Cp~CGg~LrP~ 311 (393)
.||+||..+.++
T Consensus 1 ~Cp~CG~~~~~~ 12 (23)
T PF13240_consen 1 YCPNCGAEIEDD 12 (23)
T ss_pred CCcccCCCCCCc
Confidence 488888887764
No 214
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=42.67 E-value=79 Score=29.15 Aligned_cols=53 Identities=17% Similarity=0.244 Sum_probs=41.8
Q ss_pred HhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECC-CCCCCCCcccEEEEC
Q 016198 321 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNV-GETRADDLTTLKISA 373 (393)
Q Consensus 321 ~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~-~~t~~d~~~~l~I~~ 373 (393)
.++-|++|++-.|..+.-....++.++++|+++|.|=- ...++.+.+|+.|.-
T Consensus 109 ~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~s~l~~~ad~~l~~ 162 (192)
T PRK00414 109 GREGDVLLGISTSGNSGNIIKAIEAARAKGMKVITLTGKDGGKMAGLADIEIRV 162 (192)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEe
Confidence 46789999999998998888999999999999877643 455666667776653
No 215
>cd02764 MopB_PHLH The MopB_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding (MopB) proteins. This CD is of the PHLH region homologous to the catalytic molybdopterin-binding subunit of MopB homologs.
Probab=42.29 E-value=30 Score=36.73 Aligned_cols=53 Identities=8% Similarity=0.120 Sum_probs=37.5
Q ss_pred HHhhCCeEEEeccCcchh---h--HHHHHHHHHhCC-----CeEEEECCCCCCCCCcccEEEE
Q 016198 320 AAKECDAFLVLGSSLMTM---S--AYRLVRAAHEAG-----STIAIVNVGETRADDLTTLKIS 372 (393)
Q Consensus 320 ~~~~aDllLVvGTSl~V~---p--~~~lv~~a~~~g-----a~li~IN~~~t~~d~~~~l~I~ 372 (393)
.+.++|++|++|+..... | ..+....++++| +++|.|++..+.....+|..|.
T Consensus 193 D~~~a~~il~~G~N~~~~~~~~~~~~~~~~~ar~~g~~~~g~kliviDPr~s~ta~~Ad~~l~ 255 (524)
T cd02764 193 DFDKAEVIVSIDADFLGSWISAIRHRHDFAAKRRLGAEEPMSRLVAAESVYTLTGANADVRLA 255 (524)
T ss_pred ChhHCcEEEEECCcccccCcccchhHHHHHHhccccCCCCceeEEEEecCCCchhhhhcceec
Confidence 467999999999987542 2 233333455444 4999999999888777777654
No 216
>COG0243 BisC Anaerobic dehydrogenases, typically selenocysteine-containing [Energy production and conversion]
Probab=42.26 E-value=24 Score=39.43 Aligned_cols=51 Identities=20% Similarity=0.338 Sum_probs=37.2
Q ss_pred HHhhCCeEEEeccCcch-hhHHH----HHHHHHhCCCeEEEECCCCCCCCCcccEE
Q 016198 320 AAKECDAFLVLGSSLMT-MSAYR----LVRAAHEAGSTIAIVNVGETRADDLTTLK 370 (393)
Q Consensus 320 ~~~~aDllLVvGTSl~V-~p~~~----lv~~a~~~ga~li~IN~~~t~~d~~~~l~ 370 (393)
.++.+|++|++|+.... .|... ....+++.|+++|.|++..+.....+|..
T Consensus 196 D~~~a~~iv~~G~N~~~~~~~~~~~~~~~~~~~~~~~kviviDP~~t~Ta~~ad~~ 251 (765)
T COG0243 196 DIENADLIVLWGSNPAEAHPVLGRGLLLAKAAKRSGAKVIVIDPRRTETAALADLW 251 (765)
T ss_pred hHhcCCEEEEECCChHHhCcchhhHHHHHHHhccCCCEEEEECCCCChhHHhhCCc
Confidence 37899999999997776 54322 34445667889999999988766655544
No 217
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=41.01 E-value=1.1e+02 Score=27.74 Aligned_cols=24 Identities=4% Similarity=0.124 Sum_probs=21.4
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCcC
Q 016198 111 DINQLYQFFDNSAKLIVLTGAGIS 134 (393)
Q Consensus 111 ~l~~l~~~i~~ak~IVVlTGAGIS 134 (393)
+-+.++++|++|++.||+.|.|+.
T Consensus 16 ~p~~aa~lLk~AKRPvIivG~ga~ 39 (162)
T TIGR00315 16 SPKLVAMMIKRAKRPLLIVGPENL 39 (162)
T ss_pred CHHHHHHHHHcCCCcEEEECCCcC
Confidence 457899999999999999999985
No 218
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=40.93 E-value=10 Score=27.81 Aligned_cols=11 Identities=27% Similarity=0.676 Sum_probs=8.5
Q ss_pred eeecCCCCccc
Q 016198 231 TVVCLDCGFSF 241 (393)
Q Consensus 231 ~~~C~~C~~~~ 241 (393)
...|..|+..+
T Consensus 6 ~Y~C~~Cg~~~ 16 (49)
T COG1996 6 EYKCARCGREV 16 (49)
T ss_pred EEEhhhcCCee
Confidence 45899999765
No 219
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=40.66 E-value=53 Score=32.59 Aligned_cols=53 Identities=13% Similarity=0.132 Sum_probs=41.8
Q ss_pred HhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECC-CCCCCCCcccEEEEC
Q 016198 321 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNV-GETRADDLTTLKISA 373 (393)
Q Consensus 321 ~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~-~~t~~d~~~~l~I~~ 373 (393)
+.+-|++|++-.|..+......++.+++.|+++|.|-- ......+.+|+.|.-
T Consensus 124 l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tIaIT~~~~s~La~~aD~~I~~ 177 (291)
T TIGR00274 124 LTKNDVVVGIAASGRTPYVIAGLQYARSLGALTISIACNPKSAASEIADIAIET 177 (291)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEec
Confidence 46789999999999998899999999999999877743 344555667776654
No 220
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=40.62 E-value=1.4e+02 Score=25.22 Aligned_cols=58 Identities=22% Similarity=0.303 Sum_probs=32.9
Q ss_pred EEEeccCcchhh-HHHHHHHHHhCCCeEEEECCCCCCC------------CCcccEEEECcHHHHHHHHHH
Q 016198 327 FLVLGSSLMTMS-AYRLVRAAHEAGSTIAIVNVGETRA------------DDLTTLKISARLGEILPRVLD 384 (393)
Q Consensus 327 lLVvGTSl~V~p-~~~lv~~a~~~ga~li~IN~~~t~~------------d~~~~l~I~~d~~~vL~~L~~ 384 (393)
+.|||.|.+-.. ....++...+.|.+++-||+..... +...|+.+-.--.+..+++++
T Consensus 3 iAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~ 73 (116)
T PF13380_consen 3 IAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVD 73 (116)
T ss_dssp EEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHHHHHHHH
T ss_pred EEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHHHHHHHH
Confidence 578999988544 4556666667788999999986332 235566655544444444444
No 221
>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B. Members of this largely archaeal protein family are subunit B of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdB) from molybdenum-containing (FmdB) forms of this enzyme.
Probab=40.40 E-value=49 Score=33.51 Aligned_cols=51 Identities=16% Similarity=0.273 Sum_probs=34.5
Q ss_pred hhCCeEEEeccCcch-hhH--HHH-------HHHHHhCCCeEEEECCCCCCCCCcccEEEE
Q 016198 322 KECDAFLVLGSSLMT-MSA--YRL-------VRAAHEAGSTIAIVNVGETRADDLTTLKIS 372 (393)
Q Consensus 322 ~~aDllLVvGTSl~V-~p~--~~l-------v~~a~~~ga~li~IN~~~t~~d~~~~l~I~ 372 (393)
+++|++|++|+.... .|. .++ .....++|++++.|++..+.....++.+|.
T Consensus 136 ~~ad~il~~G~n~~~~~p~~~~r~~~~~~~~~~~~~~~g~~lividp~~s~t~~~ad~~l~ 196 (421)
T TIGR03129 136 NRADVIIYWGTNPMHAHPRHMSRYSVFPRGFFTQRGREDRTVIVVDPRKTDTAKLADYHLQ 196 (421)
T ss_pred hcCCEEEEEccCccccCchHHhhhhhhhhhhhhhcccCCCEEEEECCCCCCcchhhcceec
Confidence 479999999987543 442 222 122225689999999998887666676653
No 222
>PRK13938 phosphoheptose isomerase; Provisional
Probab=40.26 E-value=84 Score=29.28 Aligned_cols=53 Identities=21% Similarity=0.327 Sum_probs=42.4
Q ss_pred HHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECC-CCCCCCCcccEEEE
Q 016198 320 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNV-GETRADDLTTLKIS 372 (393)
Q Consensus 320 ~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~-~~t~~d~~~~l~I~ 372 (393)
..++-|++|++-.|-.+.-....++.++++|+++|.|=- ..++..+.+|+.|.
T Consensus 110 ~~~~~DllI~iS~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~s~La~~aD~~l~ 163 (196)
T PRK13938 110 SARPGDTLFAISTSGNSMSVLRAAKTARELGVTVVAMTGESGGQLAEFADFLIN 163 (196)
T ss_pred cCCCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhhCCEEEE
Confidence 457889999998888888888999999999999877654 44566667777665
No 223
>PF12172 DUF35_N: Rubredoxin-like zinc ribbon domain (DUF35_N); InterPro: IPR022002 This domain has no known function and is found in conserved hypothetical archaeal and bacterial proteins. The domain is duplicated in O53566 from SWISSPROT. The structure of a DUF35 representative reveals two long N-terminal helices followed by a rubredoxin-like zinc ribbon domain represented in this family and a C-terminal OB fold domain. Zinc is chelated by the four conserved cysteines in the alignment. ; PDB: 3IRB_A.
Probab=40.14 E-value=16 Score=24.53 Aligned_cols=14 Identities=36% Similarity=0.750 Sum_probs=7.5
Q ss_pred cccceeecCCCCcc
Q 016198 227 GTVYTVVCLDCGFS 240 (393)
Q Consensus 227 Gs~~~~~C~~C~~~ 240 (393)
|.+.-.+|.+|+..
T Consensus 7 ~~l~~~rC~~Cg~~ 20 (37)
T PF12172_consen 7 GRLLGQRCRDCGRV 20 (37)
T ss_dssp T-EEEEE-TTT--E
T ss_pred CEEEEEEcCCCCCE
Confidence 55666789999975
No 224
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=39.95 E-value=80 Score=30.34 Aligned_cols=57 Identities=11% Similarity=0.008 Sum_probs=44.9
Q ss_pred HHHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCC-CCCCCCcccEEEE
Q 016198 316 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVG-ETRADDLTTLKIS 372 (393)
Q Consensus 316 ~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~-~t~~d~~~~l~I~ 372 (393)
.+...+.+-|++|++.-|..+.-....++.|+++|+++|.|=-. .++..+.+|+.|.
T Consensus 168 ~~~~~~~~~Dv~I~iS~sg~~~~~~~~~~~ak~~ga~iI~IT~~~~s~la~~ad~~l~ 225 (278)
T PRK11557 168 ATVQALSPDDLLLAISYSGERRELNLAADEALRVGAKVLAITGFTPNALQQRASHCLY 225 (278)
T ss_pred HHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCCchHHhCCEEEE
Confidence 34456789999999988888888888899999999998777654 5666677777765
No 225
>PRK05638 threonine synthase; Validated
Probab=39.87 E-value=16 Score=38.09 Aligned_cols=12 Identities=25% Similarity=0.780 Sum_probs=9.8
Q ss_pred eeecCCCCcccc
Q 016198 231 TVVCLDCGFSFC 242 (393)
Q Consensus 231 ~~~C~~C~~~~~ 242 (393)
.++|..|++.|+
T Consensus 1 ~l~C~~Cg~~~~ 12 (442)
T PRK05638 1 KMKCPKCGREYN 12 (442)
T ss_pred CeEeCCCCCCCC
Confidence 368999998876
No 226
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=39.72 E-value=27 Score=32.32 Aligned_cols=13 Identities=38% Similarity=0.598 Sum_probs=11.1
Q ss_pred CcCCCCCCccCCh
Q 016198 299 PTCQKCNGVLKPD 311 (393)
Q Consensus 299 P~Cp~CGg~LrP~ 311 (393)
-.||.||+.|.-.
T Consensus 133 F~Cp~Cg~~L~~~ 145 (176)
T COG1675 133 FTCPKCGEDLEEY 145 (176)
T ss_pred CCCCCCCchhhhc
Confidence 5799999998866
No 227
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=39.11 E-value=55 Score=31.70 Aligned_cols=53 Identities=17% Similarity=0.080 Sum_probs=41.4
Q ss_pred HhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEE-CCCCCCCCCcccEEEEC
Q 016198 321 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKISA 373 (393)
Q Consensus 321 ~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~I-N~~~t~~d~~~~l~I~~ 373 (393)
+.+-|++|.+-.|..+......++.|++.|+++|.| |...++....+|+.|.-
T Consensus 116 l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~I~It~~~~s~L~~~aD~~I~~ 169 (257)
T cd05007 116 LTERDVVIGIAASGRTPYVLGALRYARARGALTIGIACNPGSPLLQLADIAIAL 169 (257)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEEc
Confidence 468899999999999999999999999999998666 44445565666666553
No 228
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=38.63 E-value=54 Score=27.39 Aligned_cols=38 Identities=18% Similarity=0.158 Sum_probs=31.4
Q ss_pred HHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEEC
Q 016198 320 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVN 357 (393)
Q Consensus 320 ~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN 357 (393)
.+.+-|++|++--|-.+.-....++.++++|+++|.|-
T Consensus 40 ~~~~~dl~I~iS~SG~t~e~i~~~~~a~~~g~~iI~IT 77 (119)
T cd05017 40 FVDRKTLVIAVSYSGNTEETLSAVEQAKERGAKIVAIT 77 (119)
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 34678999999888888888888888899999988775
No 229
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=38.60 E-value=73 Score=31.61 Aligned_cols=62 Identities=24% Similarity=0.348 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhhCCeEEEecc--CcchhhHHHHHHHHHhCCCeEEEECCCCC----CCCCcccEEEECcHH
Q 016198 312 DRADKAMEAAKECDAFLVLGS--SLMTMSAYRLVRAAHEAGSTIAIVNVGET----RADDLTTLKISARLG 376 (393)
Q Consensus 312 ~~~~~a~~~~~~aDllLVvGT--Sl~V~p~~~lv~~a~~~ga~li~IN~~~t----~~d~~~~l~I~~d~~ 376 (393)
.|.+++.+..+++|++||||. |-++ .+|++-+.+.|.+.+.|..... -+.....+-|.+.++
T Consensus 198 ~RQ~a~~~La~~vD~miVVGg~~SsNT---~rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~~VGitaGAS 265 (281)
T PRK12360 198 KRQESAKELSKEVDVMIVIGGKHSSNT---QKLVKICEKNCPNTFHIETADELDLEMLKDYKIIGITAGAS 265 (281)
T ss_pred hHHHHHHHHHHhCCEEEEecCCCCccH---HHHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEccCC
Confidence 577778888899999999996 4444 3555556666777888875432 133344455665543
No 230
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=38.33 E-value=38 Score=28.39 Aligned_cols=53 Identities=17% Similarity=0.117 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHHHhcCCccEEEEccCcchhhhcCCCceeeecccceeecCCCCcccch
Q 016198 185 AQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLELHGTVYTVVCLDCGFSFCR 243 (393)
Q Consensus 185 a~Pn~~H~~La~L~~~g~l~~ViTQNIDgLh~rAG~~~ielHGs~~~~~C~~C~~~~~~ 243 (393)
...+..|+.|..|++.|.+..+-+.|--..++.+. +..-..+.|..|++..+.
T Consensus 40 is~~TVYR~L~~L~e~Gli~~~~~~~~~~~Y~~~~------~~~h~h~iC~~Cg~v~~~ 92 (120)
T PF01475_consen 40 ISLATVYRTLDLLEEAGLIRKIEFGDGESRYELST------CHHHHHFICTQCGKVIDL 92 (120)
T ss_dssp --HHHHHHHHHHHHHTTSEEEEEETTSEEEEEESS------SSSCEEEEETTTS-EEEE
T ss_pred cCHHHHHHHHHHHHHCCeEEEEEcCCCcceEeecC------CCcceEEEECCCCCEEEe
Confidence 34456799999999999886655443222232221 234455899999987643
No 231
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=37.95 E-value=46 Score=34.36 Aligned_cols=50 Identities=20% Similarity=0.181 Sum_probs=36.6
Q ss_pred hhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCCcccEEEEC
Q 016198 322 KECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISA 373 (393)
Q Consensus 322 ~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~~ 373 (393)
+++|..||||+-+--+--...+++.. ..|+|.|++-+++....+|++|.+
T Consensus 333 k~vDAalvi~sDp~ah~P~~~~~~l~--eIPvI~iDp~~~pTt~vadVviP~ 382 (429)
T COG1029 333 KEVDAALVIASDPGAHFPRDAVEHLA--EIPVICIDPHPTPTTEVADVVIPS 382 (429)
T ss_pred cCCCeEEEEecCccccChHHHHHHhh--cCCEEEecCCCCcchhhcceeccc
Confidence 58899999999765433344444443 689999999998887777777654
No 232
>TIGR00375 conserved hypothetical protein TIGR00375. The member of this family from Methanococcus jannaschii, MJ0043, is considerably longer and appears to contain an intein N-terminal to the region of homology.
Probab=37.32 E-value=20 Score=36.96 Aligned_cols=20 Identities=30% Similarity=0.722 Sum_probs=14.2
Q ss_pred CcCCCCCCccCCh--HHHHHHHH
Q 016198 299 PTCQKCNGVLKPD--DRADKAME 319 (393)
Q Consensus 299 P~Cp~CGg~LrP~--~~~~~a~~ 319 (393)
-+|| ||+.++-. +|+++..+
T Consensus 260 ~~Cp-CG~~i~~GV~~Rv~eLad 281 (374)
T TIGR00375 260 ANCP-CGGRIKKGVSDRLRELSD 281 (374)
T ss_pred CCCC-CCCcceechHHHHHHHhc
Confidence 5799 99998876 55554433
No 233
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=36.84 E-value=15 Score=30.84 Aligned_cols=14 Identities=29% Similarity=0.612 Sum_probs=9.5
Q ss_pred CcEEEEeCCCcCcc
Q 016198 123 AKLIVLTGAGISTE 136 (393)
Q Consensus 123 k~IVVlTGAGISas 136 (393)
++|++.+|+|+|++
T Consensus 2 kkILlvCg~G~STS 15 (104)
T PRK09590 2 KKALIICAAGMSSS 15 (104)
T ss_pred cEEEEECCCchHHH
Confidence 35777777777655
No 234
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=36.27 E-value=84 Score=31.44 Aligned_cols=61 Identities=26% Similarity=0.356 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhhCCeEEEecc--CcchhhHHHHHHHHHhCCCeEEEECCCCC----CCCCcccEEEECcH
Q 016198 312 DRADKAMEAAKECDAFLVLGS--SLMTMSAYRLVRAAHEAGSTIAIVNVGET----RADDLTTLKISARL 375 (393)
Q Consensus 312 ~~~~~a~~~~~~aDllLVvGT--Sl~V~p~~~lv~~a~~~ga~li~IN~~~t----~~d~~~~l~I~~d~ 375 (393)
.|.+++.+..+++|++||||. |-++. +|.+-+++.|.+.+.|..... -+.....+-|.+.+
T Consensus 199 ~RQ~a~~~La~~vD~miVVGg~~SsNT~---kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~VGitaGA 265 (298)
T PRK01045 199 NRQEAVKELAPQADLVIVVGSKNSSNSN---RLREVAEEAGAPAYLIDDASEIDPEWFKGVKTVGVTAGA 265 (298)
T ss_pred HHHHHHHHHHhhCCEEEEECCCCCccHH---HHHHHHHHHCCCEEEECChHHCcHHHhcCCCEEEEEecC
Confidence 677888888899999999995 44443 555556666778888875431 12333345565544
No 235
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=36.18 E-value=55 Score=32.86 Aligned_cols=56 Identities=9% Similarity=0.072 Sum_probs=42.1
Q ss_pred HhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEE-CCCCCCCCCcccEEEECcHH
Q 016198 321 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKISARLG 376 (393)
Q Consensus 321 ~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~I-N~~~t~~d~~~~l~I~~d~~ 376 (393)
+++.|++|.|--|..+.-....++.++++|+++|-| |...+.+.+.+|..|.-.++
T Consensus 90 ~~~~~lvI~iS~SGeT~e~i~al~~ak~~Ga~~I~IT~~~~S~L~~~ad~~l~~~ag 146 (340)
T PRK11382 90 LDDRCAVIGVSDYGKTEEVIKALELGRACGALTAAFTKRADSPITSAAEFSIDYQAD 146 (340)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEECCCCChHHHhCCEEEEeCCC
Confidence 457789999866777777778888888889887666 66677777888887665543
No 236
>PRK09401 reverse gyrase; Reviewed
Probab=36.17 E-value=38 Score=40.07 Aligned_cols=58 Identities=19% Similarity=0.217 Sum_probs=35.1
Q ss_pred CcCCCCCCccCCh--HHHHHHHHHHhhCCeEEEeccCcch---hhHHHHHHHHHh--CCCeEEEEC
Q 016198 299 PTCQKCNGVLKPD--DRADKAMEAAKECDAFLVLGSSLMT---MSAYRLVRAAHE--AGSTIAIVN 357 (393)
Q Consensus 299 P~Cp~CGg~LrP~--~~~~~a~~~~~~aDllLVvGTSl~V---~p~~~lv~~a~~--~ga~li~IN 357 (393)
..||.||....++ +.++...+.+.++|.+++ +|---. .-++.+...... ...+-+++|
T Consensus 693 ~~~~~c~~~~~~~k~~~~~~Lr~l~~~~d~Iii-AtDpDrEGE~Ia~~i~~~l~~~~~~i~R~~f~ 757 (1176)
T PRK09401 693 DKCPRCGSTNIEDKEEIIEALRELALEVDEVLI-ATDPDTEGEKIAWDLYLLLSPYNSNIKRIEFH 757 (1176)
T ss_pred ccccccccccCCCHHHHHHHHHHHHhcCCEEEE-ccCcChhHHHHHHHHHHHhcccCCCEEEEEee
Confidence 4799999877777 567777777889997654 443333 223344444431 234455665
No 237
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=35.84 E-value=63 Score=38.20 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHcCCcEEEEeCC
Q 016198 110 EDINQLYQFFDNSAKLIVLTGA 131 (393)
Q Consensus 110 ~~l~~l~~~i~~ak~IVVlTGA 131 (393)
..+..|.++=++..++||.||.
T Consensus 716 ~~~k~li~~g~~l~K~Vvatgn 737 (1444)
T COG2176 716 EIIKKLIKLGKKLNKPVVATGN 737 (1444)
T ss_pred HHHHHHHHHHHHhCCcEEEeCC
Confidence 3455666666678889998885
No 238
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=35.65 E-value=36 Score=30.96 Aligned_cols=45 Identities=9% Similarity=0.043 Sum_probs=24.6
Q ss_pred hhCCeEEEeccCcchhhHHHHHHHHH-hCCCeEEEECCCCCCCCCcccEEE
Q 016198 322 KECDAFLVLGSSLMTMSAYRLVRAAH-EAGSTIAIVNVGETRADDLTTLKI 371 (393)
Q Consensus 322 ~~aDllLVvGTSl~V~p~~~lv~~a~-~~ga~li~IN~~~t~~d~~~~l~I 371 (393)
.++|++|.+|+.+ |-..+++...+ -...++|.|+. .+...+++.+
T Consensus 99 g~~DlvlfvG~~~--y~~~~~ls~lk~f~~~~~i~l~~---~y~pnA~~Sf 144 (162)
T TIGR00315 99 GNYDLVLFLGIIY--YYLSQMLSSLKHFSHIVTIAIDK---YYQPNADYSF 144 (162)
T ss_pred CCcCEEEEeCCcc--hHHHHHHHHHHhhcCcEEEEecC---CCCCCCceec
Confidence 4788888888877 54444444322 11455555552 2244555553
No 239
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=35.58 E-value=99 Score=29.96 Aligned_cols=54 Identities=22% Similarity=0.203 Sum_probs=41.6
Q ss_pred HHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECC-CCCCCCCcccEEEE
Q 016198 319 EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNV-GETRADDLTTLKIS 372 (393)
Q Consensus 319 ~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~-~~t~~d~~~~l~I~ 372 (393)
..+.+-|++|++--|..+.-...+++.|+++|+++|.|=- ..++....+|+.|.
T Consensus 183 ~~~~~~Dl~I~iS~sG~t~~~~~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~ 237 (292)
T PRK11337 183 ALLQEGDVVLVVSHSGRTSDVIEAVELAKKNGAKIICITNSYHSPIAKLADYVIC 237 (292)
T ss_pred hcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEE
Confidence 4567889999998888888888999999999999877743 34555566666654
No 240
>COG2051 RPS27A Ribosomal protein S27E [Translation, ribosomal structure and biogenesis]
Probab=35.46 E-value=20 Score=27.99 Aligned_cols=17 Identities=35% Similarity=0.644 Sum_probs=14.9
Q ss_pred eeecccceeecCCCCcc
Q 016198 224 ELHGTVYTVVCLDCGFS 240 (393)
Q Consensus 224 elHGs~~~~~C~~C~~~ 240 (393)
+.+|.+-++.|.+|+..
T Consensus 12 ~p~s~Fl~VkCpdC~N~ 28 (67)
T COG2051 12 EPRSRFLRVKCPDCGNE 28 (67)
T ss_pred CCCceEEEEECCCCCCE
Confidence 78899999999999964
No 241
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=35.01 E-value=22 Score=30.78 Aligned_cols=19 Identities=21% Similarity=0.527 Sum_probs=12.2
Q ss_pred eeeecccceeecCCCCcccc
Q 016198 223 LELHGTVYTVVCLDCGFSFC 242 (393)
Q Consensus 223 ielHGs~~~~~C~~C~~~~~ 242 (393)
++++=--...+| +|++.+.
T Consensus 62 L~I~~vp~~~~C-~Cg~~~~ 80 (124)
T PRK00762 62 LIVEMIPVEIEC-ECGYEGV 80 (124)
T ss_pred EEEEecCeeEEe-eCcCccc
Confidence 444444456799 9997654
No 242
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=34.83 E-value=40 Score=32.61 Aligned_cols=31 Identities=23% Similarity=0.642 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHHcC-CcEEEEeCCCcCccC
Q 016198 107 PSIEDINQLYQFFDNS-AKLIVLTGAGISTEC 137 (393)
Q Consensus 107 ~~~~~l~~l~~~i~~a-k~IVVlTGAGISasS 137 (393)
+....++.|++++..| ++|+|+.|||+.++.
T Consensus 153 sa~eg~~~l~~li~~a~gri~Im~GaGV~~~N 184 (241)
T COG3142 153 SALEGLDLLKRLIEQAKGRIIIMAGAGVRAEN 184 (241)
T ss_pred chhhhHHHHHHHHHHhcCCEEEEeCCCCCHHH
Confidence 3456788999999877 799999999998764
No 243
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=34.82 E-value=18 Score=28.53 Aligned_cols=14 Identities=43% Similarity=0.795 Sum_probs=10.2
Q ss_pred cEEEEeCCCcCccC
Q 016198 124 KLIVLTGAGISTEC 137 (393)
Q Consensus 124 ~IVVlTGAGISasS 137 (393)
+|++.+|+|+|++.
T Consensus 1 kIlvvC~~Gi~TS~ 14 (90)
T PF02302_consen 1 KILVVCGSGIGTSL 14 (90)
T ss_dssp EEEEEESSSSHHHH
T ss_pred CEEEECCChHHHHH
Confidence 47788888887663
No 244
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=34.74 E-value=1e+02 Score=29.23 Aligned_cols=54 Identities=9% Similarity=0.094 Sum_probs=43.0
Q ss_pred HHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEEC-CCCCCCCCcccEEEEC
Q 016198 320 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVN-VGETRADDLTTLKISA 373 (393)
Q Consensus 320 ~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN-~~~t~~d~~~~l~I~~ 373 (393)
.+++-|++|++-.|-.+.-....++.|+++|+++|.|= ...+++.+.+++.|.-
T Consensus 44 ~~~~~d~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~~~~d~~l~~ 98 (268)
T TIGR00393 44 MVEPNDVVLMISYSGESLELLNLIPHLKRLSHKIIAFTGSPNSSLARAADYVLDI 98 (268)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEEECCCCCcccccCCEEEEc
Confidence 35678999999989899999999999999999976554 4556777777777654
No 245
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=34.29 E-value=79 Score=31.21 Aligned_cols=54 Identities=7% Similarity=0.115 Sum_probs=43.3
Q ss_pred HhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECC-CCCCCCCcccEEEECc
Q 016198 321 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNV-GETRADDLTTLKISAR 374 (393)
Q Consensus 321 ~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~-~~t~~d~~~~l~I~~d 374 (393)
+.+.|++|++-.|..+.-..+.++.+++.|+++|.|-- ..+++...+++.+...
T Consensus 92 ~~~~d~~I~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~la~~ad~~l~~~ 146 (326)
T PRK10892 92 VTPQDVVIAISNSGESSEILALIPVLKRLHVPLICITGRPESSMARAADIHLCVK 146 (326)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCcccccCCEEEEeC
Confidence 56789999999888999999999999999999876655 4467777778776543
No 246
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.21 E-value=21 Score=28.82 Aligned_cols=20 Identities=35% Similarity=0.657 Sum_probs=11.9
Q ss_pred CCcCCCCCCccCChHHHHHH
Q 016198 298 IPTCQKCNGVLKPDDRADKA 317 (393)
Q Consensus 298 iP~Cp~CGg~LrP~~~~~~a 317 (393)
+-.||+|+|+--....+++.
T Consensus 21 iD~CPrCrGVWLDrGELdKl 40 (88)
T COG3809 21 IDYCPRCRGVWLDRGELDKL 40 (88)
T ss_pred eeeCCccccEeecchhHHHH
Confidence 34699999964433334333
No 247
>PLN02569 threonine synthase
Probab=33.93 E-value=21 Score=37.99 Aligned_cols=12 Identities=17% Similarity=0.290 Sum_probs=10.1
Q ss_pred eeecCCCCcccc
Q 016198 231 TVVCLDCGFSFC 242 (393)
Q Consensus 231 ~~~C~~C~~~~~ 242 (393)
.++|..|++.|+
T Consensus 49 ~l~C~~Cg~~y~ 60 (484)
T PLN02569 49 FLECPLTGEKYS 60 (484)
T ss_pred ccEeCCCCCcCC
Confidence 479999998875
No 248
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=33.68 E-value=38 Score=22.51 Aligned_cols=10 Identities=20% Similarity=0.521 Sum_probs=7.1
Q ss_pred CCcCCCCCCc
Q 016198 298 IPTCQKCNGV 307 (393)
Q Consensus 298 iP~Cp~CGg~ 307 (393)
.-+|+.||..
T Consensus 17 ~irC~~CG~R 26 (32)
T PF03604_consen 17 PIRCPECGHR 26 (32)
T ss_dssp TSSBSSSS-S
T ss_pred cEECCcCCCe
Confidence 4589999963
No 249
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=33.48 E-value=19 Score=34.01 Aligned_cols=14 Identities=29% Similarity=0.691 Sum_probs=10.9
Q ss_pred eeecCCCCcccchh
Q 016198 231 TVVCLDCGFSFCRD 244 (393)
Q Consensus 231 ~~~C~~C~~~~~~~ 244 (393)
..+|+.|+..+...
T Consensus 5 ~~~CPvC~~~F~~~ 18 (214)
T PF09986_consen 5 KITCPVCGKEFKTK 18 (214)
T ss_pred ceECCCCCCeeeee
Confidence 47899999887644
No 250
>PRK08329 threonine synthase; Validated
Probab=33.48 E-value=21 Score=35.98 Aligned_cols=12 Identities=25% Similarity=0.816 Sum_probs=9.7
Q ss_pred eecCCCCcccch
Q 016198 232 VVCLDCGFSFCR 243 (393)
Q Consensus 232 ~~C~~C~~~~~~ 243 (393)
++|..|++.|+.
T Consensus 2 l~C~~Cg~~~~~ 13 (347)
T PRK08329 2 LRCTKCGRTYEE 13 (347)
T ss_pred cCcCCCCCCcCC
Confidence 589999988863
No 251
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=33.14 E-value=40 Score=35.74 Aligned_cols=72 Identities=13% Similarity=0.091 Sum_probs=44.9
Q ss_pred HHHHHHHHHhhCCeEEEeccCcchhhHHHH---------H-HHHHhCCCeEEEECCCCCC---------CCCcccEEEEC
Q 016198 313 RADKAMEAAKECDAFLVLGSSLMTMSAYRL---------V-RAAHEAGSTIAIVNVGETR---------ADDLTTLKISA 373 (393)
Q Consensus 313 ~~~~a~~~~~~aDllLVvGTSl~V~p~~~l---------v-~~a~~~ga~li~IN~~~t~---------~d~~~~l~I~~ 373 (393)
.+|+.-+.+.++|++||||..-.|.|+++- + -++- +-..+|.++++-.. +....+.-+-|
T Consensus 372 emdeiN~~f~~~Dv~lViGANDvVNPaA~~d~~SpI~GMPil~v~-~ak~Viv~Krsm~~Gyagv~NpLF~~~nt~MlfG 450 (463)
T PF02233_consen 372 EMDEINPDFPDTDVVLVIGANDVVNPAAREDPNSPIYGMPILEVW-KAKQVIVIKRSMSPGYAGVDNPLFYKDNTRMLFG 450 (463)
T ss_dssp EHHHHGGGGGG-SEEEEES-SGGG-CHHCCSTTSTTTTSS---GG-GSSEEEEEESSS--TTTS-S-GGGGSTTEEEEES
T ss_pred hhhhcccchhcCCEEEEeccccccCchhccCCCCCCCCCeecchh-hcCeEEEEEcCCCCCCCCCCCcceecCCcEEEec
Confidence 366666778999999999999999777653 1 1111 12356667665321 23355667899
Q ss_pred cHHHHHHHHHHh
Q 016198 374 RLGEILPRVLDV 385 (393)
Q Consensus 374 d~~~vL~~L~~~ 385 (393)
|+.+.+.++.+.
T Consensus 451 DAk~~~~~l~~~ 462 (463)
T PF02233_consen 451 DAKKTLEELVAE 462 (463)
T ss_dssp -HHHHHHHHHHH
T ss_pred cHHHHHHHHHHh
Confidence 999999998864
No 252
>cd02771 MopB_NDH-1_NuoG2-N7 MopB_NDH-1_NuoG2-N7: The second domain of the NuoG subunit (with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Unique to this group, compared to the other prokaryotic and eukaryotic groups in this domain
Probab=32.92 E-value=54 Score=34.09 Aligned_cols=31 Identities=32% Similarity=0.385 Sum_probs=20.0
Q ss_pred HHHhhCCeEEEeccCcch-hhH-H-HHHHHHHhC
Q 016198 319 EAAKECDAFLVLGSSLMT-MSA-Y-RLVRAAHEA 349 (393)
Q Consensus 319 ~~~~~aDllLVvGTSl~V-~p~-~-~lv~~a~~~ 349 (393)
+.+.++|++|++|+.... .|. . ++...++++
T Consensus 141 ~di~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~ 174 (472)
T cd02771 141 RDIESADAVLVLGEDLTQTAPRIALALRQAARRK 174 (472)
T ss_pred HHHHhCCEEEEEeCCccccchHHHHHHHHHHHcC
Confidence 356799999999997654 543 3 333344455
No 253
>PRK13936 phosphoheptose isomerase; Provisional
Probab=32.88 E-value=97 Score=28.59 Aligned_cols=54 Identities=15% Similarity=0.208 Sum_probs=40.9
Q ss_pred HhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECC-CCCCCCC---cccEEEECc
Q 016198 321 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNV-GETRADD---LTTLKISAR 374 (393)
Q Consensus 321 ~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~-~~t~~d~---~~~l~I~~d 374 (393)
.++-|++|++-.|-.+.-..++++.++++|+++|.|-- ..++..+ .+|+.|.-.
T Consensus 109 ~~~~Dv~i~iS~sG~t~~~~~~~~~ak~~g~~iI~IT~~~~s~l~~l~~~ad~~l~v~ 166 (197)
T PRK13936 109 GQPGDVLLAISTSGNSANVIQAIQAAHEREMHVVALTGRDGGKMASLLLPEDVEIRVP 166 (197)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhhhhhccCCEEEEeC
Confidence 46889999999998888888999999999999887654 3444444 366665433
No 254
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=32.79 E-value=19 Score=29.81 Aligned_cols=12 Identities=42% Similarity=1.060 Sum_probs=9.4
Q ss_pred eeecCCCCcccc
Q 016198 231 TVVCLDCGFSFC 242 (393)
Q Consensus 231 ~~~C~~C~~~~~ 242 (393)
-.+|-+||+.+.
T Consensus 58 Pa~CkkCGfef~ 69 (97)
T COG3357 58 PARCKKCGFEFR 69 (97)
T ss_pred ChhhcccCcccc
Confidence 458999998764
No 255
>COG5349 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.78 E-value=27 Score=30.39 Aligned_cols=13 Identities=38% Similarity=0.853 Sum_probs=8.8
Q ss_pred CcCCCCC------CccCCh
Q 016198 299 PTCQKCN------GVLKPD 311 (393)
Q Consensus 299 P~Cp~CG------g~LrP~ 311 (393)
-+||+|| |.||+-
T Consensus 22 grCP~CGeGrLF~gFLK~~ 40 (126)
T COG5349 22 GRCPRCGEGRLFRGFLKVV 40 (126)
T ss_pred CCCCCCCCchhhhhhcccC
Confidence 4688887 456655
No 256
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=32.60 E-value=70 Score=29.55 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhhC--CeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCC
Q 016198 312 DRADKAMEAAKEC--DAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGE 360 (393)
Q Consensus 312 ~~~~~a~~~~~~a--DllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~ 360 (393)
..++...+.+++. +-+++|||||-=+-+..|. .+.+.+-|+||+--
T Consensus 44 ~a~~~l~~~i~~~~~~~~~liGSSlGG~~A~~La---~~~~~~avLiNPav 91 (187)
T PF05728_consen 44 EAIAQLEQLIEELKPENVVLIGSSLGGFYATYLA---ERYGLPAVLINPAV 91 (187)
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEChHHHHHHHHH---HHhCCCEEEEcCCC
Confidence 4444444444432 2489999999877777664 34588889999753
No 257
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=32.17 E-value=88 Score=31.07 Aligned_cols=52 Identities=15% Similarity=0.148 Sum_probs=41.5
Q ss_pred HhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECC-CCCCCCCcccEEEE
Q 016198 321 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNV-GETRADDLTTLKIS 372 (393)
Q Consensus 321 ~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~-~~t~~d~~~~l~I~ 372 (393)
+.+-|++|.+-.|..+.-....++.+++.|+++|-|.- ..+++.+.+++.|.
T Consensus 125 l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~s~La~~aD~~I~ 177 (296)
T PRK12570 125 LTADDVVVGIAASGRTPYVIGALEYAKQIGATTIALSCNPDSPIAKIADIAIS 177 (296)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEe
Confidence 35789999999999998889999999999999877754 34556666777765
No 258
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=31.98 E-value=22 Score=29.10 Aligned_cols=13 Identities=38% Similarity=0.736 Sum_probs=8.9
Q ss_pred cEEEEeCCCcCcc
Q 016198 124 KLIVLTGAGISTE 136 (393)
Q Consensus 124 ~IVVlTGAGISas 136 (393)
+|++.+|+|+|++
T Consensus 1 kIl~~Cg~G~sTS 13 (96)
T cd05564 1 KILLVCSAGMSTS 13 (96)
T ss_pred CEEEEcCCCchHH
Confidence 3677777777665
No 259
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=31.80 E-value=1e+02 Score=32.73 Aligned_cols=64 Identities=13% Similarity=0.052 Sum_probs=46.7
Q ss_pred hCCeEEEeccCcchhhHHHHHHHHHhC--CCeEEEECCCCCCCC-------CcccEEEECcHHHHHHHHHHhC
Q 016198 323 ECDAFLVLGSSLMTMSAYRLVRAAHEA--GSTIAIVNVGETRAD-------DLTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 323 ~aDllLVvGTSl~V~p~~~lv~~a~~~--ga~li~IN~~~t~~d-------~~~~l~I~~d~~~vL~~L~~~~ 386 (393)
..|+|.+-.++.+.+.+.++++.+++. ++++|.=....|..+ ..+|.++.|+.++++.+|++.+
T Consensus 63 ~pdvVgis~~t~~~~~a~~~~~~~k~~~P~~~iV~GG~h~t~~~~~~l~~~p~vD~Vv~GEGE~~~~~Ll~~l 135 (497)
T TIGR02026 63 CPDLVLITAITPAIYIACETLKFARERLPNAIIVLGGIHPTFMFHQVLTEAPWIDFIVRGEGEETVVKLIAAL 135 (497)
T ss_pred CcCEEEEecCcccHHHHHHHHHHHHHHCCCCEEEEcCCCcCcCHHHHHhcCCCccEEEeCCcHHHHHHHHHHH
Confidence 688877755555556677777776654 777777777666432 2478999999999999998753
No 260
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=31.78 E-value=62 Score=34.27 Aligned_cols=71 Identities=11% Similarity=0.111 Sum_probs=44.8
Q ss_pred HHHHHHHHhhCCeEEEeccCcchhhHHHHHH----------HHHhCCCeEEEECCCCCC----CC-----CcccEEEECc
Q 016198 314 ADKAMEAAKECDAFLVLGSSLMTMSAYRLVR----------AAHEAGSTIAIVNVGETR----AD-----DLTTLKISAR 374 (393)
Q Consensus 314 ~~~a~~~~~~aDllLVvGTSl~V~p~~~lv~----------~a~~~ga~li~IN~~~t~----~d-----~~~~l~I~~d 374 (393)
+++.-+.+.++|+.||||..-.|.|+++--. .+. +-..++.++++-.. .+ ...+.-+-+|
T Consensus 372 MdeIN~~F~~tDvalVIGANDvVNPaA~~dp~SpIyGMPvL~v~-kAk~Viv~KRs~~~GyAGv~NpLF~~~nt~MlfGD 450 (462)
T PRK09444 372 MDEINDDFADTDTVLVIGANDTVNPAAQEDPNSPIAGMPVLEVW-KAQNVIVFKRSMNTGYAGVQNPLFFKENTQMLFGD 450 (462)
T ss_pred HHhhccccccCCEEEEecCccCCCcccccCCCCCcCCCceeehh-hCCEEEEEeCCCCCCcCCCCCcceecCCceEEecc
Confidence 4555556789999999999999988765311 111 11234555544211 12 2344558899
Q ss_pred HHHHHHHHHHh
Q 016198 375 LGEILPRVLDV 385 (393)
Q Consensus 375 ~~~vL~~L~~~ 385 (393)
+.+.+.+|++.
T Consensus 451 AK~~~~~l~~~ 461 (462)
T PRK09444 451 AKASVDAILKA 461 (462)
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 261
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type. The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model.
Probab=31.59 E-value=59 Score=38.66 Aligned_cols=12 Identities=50% Similarity=1.010 Sum_probs=10.0
Q ss_pred cCCCCCCccCCh
Q 016198 300 TCQKCNGVLKPD 311 (393)
Q Consensus 300 ~Cp~CGg~LrP~ 311 (393)
.||+||..|+=|
T Consensus 710 ~cp~c~~~~~~d 721 (1213)
T TIGR01405 710 DCPKCGAPLKKD 721 (1213)
T ss_pred cCcccccccccc
Confidence 599999988855
No 262
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=31.31 E-value=27 Score=29.45 Aligned_cols=13 Identities=38% Similarity=0.739 Sum_probs=6.5
Q ss_pred cEEEEeCCCcCcc
Q 016198 124 KLIVLTGAGISTE 136 (393)
Q Consensus 124 ~IVVlTGAGISas 136 (393)
+|+++++||+||+
T Consensus 3 ~IlLvC~aGmSTS 15 (102)
T COG1440 3 KILLVCAAGMSTS 15 (102)
T ss_pred eEEEEecCCCcHH
Confidence 4455555555543
No 263
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=31.05 E-value=29 Score=34.18 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=13.1
Q ss_pred CCCc--eeeecc----cceeecCCCCcccc
Q 016198 219 GSNP--LELHGT----VYTVVCLDCGFSFC 242 (393)
Q Consensus 219 G~~~--ielHGs----~~~~~C~~C~~~~~ 242 (393)
|..+ -.++|. .+++.|+-|+..+.
T Consensus 179 Gs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~ 208 (290)
T PF04216_consen 179 GSPPVLSVLRGGEREGKRYLHCSLCGTEWR 208 (290)
T ss_dssp ---EEEEEEE------EEEEEETTT--EEE
T ss_pred CCcCceEEEecCCCCccEEEEcCCCCCeee
Confidence 4455 666664 58899999998764
No 264
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=30.81 E-value=83 Score=30.06 Aligned_cols=38 Identities=18% Similarity=0.258 Sum_probs=30.2
Q ss_pred HHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEEC
Q 016198 320 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVN 357 (393)
Q Consensus 320 ~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN 357 (393)
.++..|+++||-+|-.-.---++.+++++.|+++|.|-
T Consensus 101 ~i~~~DVliviSnSGrNpvpie~A~~~rekGa~vI~vT 138 (243)
T COG4821 101 QIRPNDVLIVISNSGRNPVPIEVAEYAREKGAKVIAVT 138 (243)
T ss_pred cCCCCCEEEEEeCCCCCCcchHHHHHHHhcCCeEEEEe
Confidence 45788999999887765444588888999999988775
No 265
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=30.79 E-value=1e+02 Score=25.47 Aligned_cols=35 Identities=23% Similarity=0.247 Sum_probs=26.3
Q ss_pred hCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCC
Q 016198 323 ECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGE 360 (393)
Q Consensus 323 ~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~ 360 (393)
..|+|+..+.+ .++..+...+-++|..+|..|.+.
T Consensus 59 ~~dvvVE~t~~---~~~~~~~~~~L~~G~~VVt~nk~a 93 (117)
T PF03447_consen 59 DIDVVVECTSS---EAVAEYYEKALERGKHVVTANKGA 93 (117)
T ss_dssp T-SEEEE-SSC---HHHHHHHHHHHHTTCEEEES-HHH
T ss_pred CCCEEEECCCc---hHHHHHHHHHHHCCCeEEEECHHH
Confidence 79999999544 667788888888999999999765
No 266
>PRK04940 hypothetical protein; Provisional
Probab=30.75 E-value=97 Score=28.72 Aligned_cols=35 Identities=23% Similarity=0.075 Sum_probs=27.0
Q ss_pred CeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCC
Q 016198 325 DAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETR 362 (393)
Q Consensus 325 DllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~ 362 (393)
+=+++|||||-=+-+..|.. +.|.+-|+||+.-.+
T Consensus 60 ~~~~liGSSLGGyyA~~La~---~~g~~aVLiNPAv~P 94 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGF---LCGIRQVIFNPNLFP 94 (180)
T ss_pred CCcEEEEeChHHHHHHHHHH---HHCCCEEEECCCCCh
Confidence 34788999998777777654 458999999987544
No 267
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=30.25 E-value=55 Score=24.92 Aligned_cols=13 Identities=31% Similarity=0.825 Sum_probs=11.9
Q ss_pred CcCCCCCCccCCh
Q 016198 299 PTCQKCNGVLKPD 311 (393)
Q Consensus 299 P~Cp~CGg~LrP~ 311 (393)
-+|+.||.++.|+
T Consensus 4 kHC~~CG~~Ip~~ 16 (59)
T PF09889_consen 4 KHCPVCGKPIPPD 16 (59)
T ss_pred CcCCcCCCcCCcc
Confidence 4799999999999
No 268
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=30.10 E-value=56 Score=30.06 Aligned_cols=23 Identities=9% Similarity=0.138 Sum_probs=14.6
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCc
Q 016198 111 DINQLYQFFDNSAKLIVLTGAGI 133 (393)
Q Consensus 111 ~l~~l~~~i~~ak~IVVlTGAGI 133 (393)
..+.+.++.++.+--|+.|+.|+
T Consensus 51 a~e~l~elaEkl~iPVvtT~~~~ 73 (171)
T PRK00945 51 LLDRAVKIAKKANIPVAATGGSY 73 (171)
T ss_pred HHHHHHHHHHHHCCCEEEccccc
Confidence 45667777766666666666543
No 269
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=29.83 E-value=29 Score=34.30 Aligned_cols=9 Identities=22% Similarity=0.674 Sum_probs=7.8
Q ss_pred CCcCCCCCC
Q 016198 298 IPTCQKCNG 306 (393)
Q Consensus 298 iP~Cp~CGg 306 (393)
.+.||+||+
T Consensus 368 ~~~c~~c~~ 376 (389)
T PRK11788 368 YWHCPSCKA 376 (389)
T ss_pred eeECcCCCC
Confidence 588999996
No 270
>PF01396 zf-C4_Topoisom: Topoisomerase DNA binding C4 zinc finger; InterPro: IPR013498 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry represents the zinc-finger domain found in type IA topoisomerases, including bacterial and archaeal topoisomerase I and III enzymes, and in eukaryotic topoisomerase III enzymes. Escherichia coli topoisomerase I proteins contain five copies of a zinc-ribbon-like domain at their C terminus, two of which have lost their cysteine residues and are therefore probably not able to bind zinc []. This domain is still considered to be a member of the zinc-ribbon superfamily despite not being able to bind zinc. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0005694 chromosome
Probab=29.44 E-value=23 Score=24.37 Aligned_cols=10 Identities=50% Similarity=1.119 Sum_probs=8.5
Q ss_pred cCCCCCCccC
Q 016198 300 TCQKCNGVLK 309 (393)
Q Consensus 300 ~Cp~CGg~Lr 309 (393)
.||.||+.|.
T Consensus 3 ~CP~Cg~~lv 12 (39)
T PF01396_consen 3 KCPKCGGPLV 12 (39)
T ss_pred CCCCCCceeE
Confidence 6999999775
No 271
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=29.42 E-value=58 Score=35.21 Aligned_cols=27 Identities=15% Similarity=0.294 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHcCCcEEEEeCCCcC
Q 016198 108 SIEDINQLYQFFDNSAKLIVLTGAGIS 134 (393)
Q Consensus 108 ~~~~l~~l~~~i~~ak~IVVlTGAGIS 134 (393)
..+.+++++++|++|++.||+.|.|+.
T Consensus 207 ~~~~i~~~~~~L~~AkrPvil~G~g~~ 233 (587)
T PRK06965 207 HSGQIRKAVSLLLSAKRPYIYTGGGVI 233 (587)
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCcc
Confidence 467899999999999999999999996
No 272
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=29.41 E-value=1.1e+02 Score=28.61 Aligned_cols=53 Identities=17% Similarity=0.153 Sum_probs=39.6
Q ss_pred HHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECC-CCCCCCCc---ccEEEE
Q 016198 320 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNV-GETRADDL---TTLKIS 372 (393)
Q Consensus 320 ~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~-~~t~~d~~---~~l~I~ 372 (393)
..++-|++|++-+|-++......++.|++.|+++|.|-- ..+++.+. +|+.|.
T Consensus 106 ~~~~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~s~l~~l~~~~D~~i~ 162 (196)
T PRK10886 106 LGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIR 162 (196)
T ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhccccCCEEEE
Confidence 356789999999999998899999999999999776653 44454442 455543
No 273
>TIGR02164 torA trimethylamine-N-oxide reductase TorA. This very narrowly defined family represents TorA, part of a family of related molybdoenzymes that include biotin sulfoxide reductases, dimethyl sulfoxide reductases, and at least two different subfamilies of trimethylamine-N-oxide reductases. A single enzyme from the larger family may have more than one activity. TorA typically is located in the periplasm, has a Tat (twin-arginine translocation)-dependent signal sequence, and is encoded in a torCAD operon.
Probab=29.31 E-value=84 Score=35.53 Aligned_cols=50 Identities=8% Similarity=0.147 Sum_probs=33.8
Q ss_pred HhhCCeEEEeccCcch----------hhHHHHHHHHHh---C-CCeEEEECCCCCCCCCc-ccEE
Q 016198 321 AKECDAFLVLGSSLMT----------MSAYRLVRAAHE---A-GSTIAIVNVGETRADDL-TTLK 370 (393)
Q Consensus 321 ~~~aDllLVvGTSl~V----------~p~~~lv~~a~~---~-ga~li~IN~~~t~~d~~-~~l~ 370 (393)
+.++|++|+.|+...+ .|...++..+++ + |+++|.|++..|..... ++..
T Consensus 208 ~~~a~~il~wG~Np~~s~~~~~~~~~~~~~~~~~~~~~~~~~ggaklIvIDPr~t~tA~~~ad~~ 272 (822)
T TIGR02164 208 LENSDTIVLWANDPVKNLQVGWNCETHESFAYLAQLKEKVAAGEINVISIDPVVTKTQAYLGCEH 272 (822)
T ss_pred HHhCCEEEEECCCHHHhcCcccccCCCchHHHHHHHHHHhhCCCceEEEECCCCCchhhhccCeE
Confidence 5789999999988642 354444433332 3 48999999998876543 3444
No 274
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.19 E-value=11 Score=33.08 Aligned_cols=15 Identities=27% Similarity=0.811 Sum_probs=9.9
Q ss_pred CCCC-cCCCCCCccCCh
Q 016198 296 FHIP-TCQKCNGVLKPD 311 (393)
Q Consensus 296 ~~iP-~Cp~CGg~LrP~ 311 (393)
+.+| .|.+||... |+
T Consensus 65 ye~psfchncgs~f-pw 80 (160)
T COG4306 65 YEPPSFCHNCGSRF-PW 80 (160)
T ss_pred CCCcchhhcCCCCC-Cc
Confidence 3444 499999873 55
No 275
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=29.16 E-value=28 Score=29.24 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=12.4
Q ss_pred CcEEEEeCCCcCccC
Q 016198 123 AKLIVLTGAGISTEC 137 (393)
Q Consensus 123 k~IVVlTGAGISasS 137 (393)
++|++++|+|+|++-
T Consensus 4 kkIllvC~~G~sTSl 18 (106)
T PRK10499 4 KHIYLFCSAGMSTSL 18 (106)
T ss_pred CEEEEECCCCccHHH
Confidence 579999999999764
No 276
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=28.83 E-value=89 Score=28.72 Aligned_cols=43 Identities=19% Similarity=0.295 Sum_probs=22.7
Q ss_pred HHHHHHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCC
Q 016198 313 RADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGE 360 (393)
Q Consensus 313 ~~~~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~ 360 (393)
.+.+..+.+ +.|++|+++|-+ +| .|+..++++|+++++||-.-
T Consensus 86 ~~~rfl~~~-~P~~~i~~EtEl--WP--nll~~a~~~~ip~~LvNarl 128 (186)
T PF04413_consen 86 AVRRFLDHW-RPDLLIWVETEL--WP--NLLREAKRRGIPVVLVNARL 128 (186)
T ss_dssp HHHHHHHHH---SEEEEES------H--HHHHH-----S-EEEEEE--
T ss_pred HHHHHHHHh-CCCEEEEEcccc--CH--HHHHHHhhcCCCEEEEeeee
Confidence 345555555 459999999977 55 68888888999999999543
No 277
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=28.74 E-value=66 Score=34.76 Aligned_cols=28 Identities=25% Similarity=0.449 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCcC
Q 016198 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (393)
Q Consensus 107 ~~~~~l~~l~~~i~~ak~IVVlTGAGIS 134 (393)
+..+.+++++++|.+|++.||++|.|+-
T Consensus 202 ~~~~~v~~a~~~L~~AkrPvil~G~g~~ 229 (585)
T CHL00099 202 PTIKRIEQAAKLILQSSQPLLYVGGGAI 229 (585)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECCCCc
Confidence 4567899999999999999999999994
No 278
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=28.62 E-value=31 Score=26.28 Aligned_cols=15 Identities=20% Similarity=0.601 Sum_probs=12.6
Q ss_pred CCCcCCCCCCccCCh
Q 016198 297 HIPTCQKCNGVLKPD 311 (393)
Q Consensus 297 ~iP~Cp~CGg~LrP~ 311 (393)
..|.||-|++.|+..
T Consensus 38 ~~p~CPlC~s~M~~~ 52 (59)
T PF14169_consen 38 EEPVCPLCKSPMVSG 52 (59)
T ss_pred CCccCCCcCCccccc
Confidence 469999999998754
No 279
>PRK07524 hypothetical protein; Provisional
Probab=28.59 E-value=55 Score=34.82 Aligned_cols=28 Identities=18% Similarity=0.355 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCcC
Q 016198 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (393)
Q Consensus 107 ~~~~~l~~l~~~i~~ak~IVVlTGAGIS 134 (393)
+..+.++++.++|.+|++.||++|.|..
T Consensus 186 ~~~~~i~~~~~~L~~AkrPvil~G~g~~ 213 (535)
T PRK07524 186 PAPAALAQAAERLAAARRPLILAGGGAL 213 (535)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEECCChH
Confidence 3457899999999999999999999985
No 280
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=28.49 E-value=1.3e+02 Score=31.26 Aligned_cols=45 Identities=24% Similarity=0.273 Sum_probs=31.8
Q ss_pred HHHHHHHHHHh-hCCeEEEecc--CcchhhHHHHHHHHHhCCCeEEEECCC
Q 016198 312 DRADKAMEAAK-ECDAFLVLGS--SLMTMSAYRLVRAAHEAGSTIAIVNVG 359 (393)
Q Consensus 312 ~~~~~a~~~~~-~aDllLVvGT--Sl~V~p~~~lv~~a~~~ga~li~IN~~ 359 (393)
.|.+++.+... ++|++||||. |-++ .+|++-+.+.|.+.+.|+..
T Consensus 276 ~RQ~A~~~La~~~vD~miVVGG~nSSNT---~rL~eia~~~g~~ty~Ie~~ 323 (387)
T PRK13371 276 ERQDAMFSLVEEPLDLMVVIGGYNSSNT---THLQEIAIERGIPSYHIDSP 323 (387)
T ss_pred HHHHHHHHHhhcCCCEEEEECCCCCccH---HHHHHHHHhcCCCEEEECCH
Confidence 55666666655 7999999995 4444 45666666678888888854
No 281
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=28.43 E-value=67 Score=34.66 Aligned_cols=39 Identities=18% Similarity=0.364 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCcCc----------cCCCCCcCCC
Q 016198 107 PSIEDINQLYQFFDNSAKLIVLTGAGIST----------ECGIPDYRSP 145 (393)
Q Consensus 107 ~~~~~l~~l~~~i~~ak~IVVlTGAGISa----------sSGIPdFRs~ 145 (393)
+..+.+++++++|.+|++.||++|.|..- ..|+|-+-+.
T Consensus 185 ~~~~~v~~~~~~L~~AkrPvil~G~g~~~a~~~l~~lae~l~~PV~tt~ 233 (575)
T TIGR02720 185 PDVEAVTRAVQTLKAAERPVIYYGIGARKAGEELEALSEKLKIPLISTG 233 (575)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECcchhhHHHHHHHHHHHhCCCEEEcc
Confidence 45678999999999999999999999962 2477866443
No 282
>PRK14717 putative glycine/sarcosine/betaine reductase complex protein A; Provisional
Probab=28.15 E-value=79 Score=26.66 Aligned_cols=36 Identities=28% Similarity=0.646 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEeCC------CcCccC---CCCCcCCC
Q 016198 109 IEDINQLYQFFDNSAKLIVLTGA------GISTEC---GIPDYRSP 145 (393)
Q Consensus 109 ~~~l~~l~~~i~~ak~IVVlTGA------GISasS---GIPdFRs~ 145 (393)
+..+.++++... +.++||+-|| ||.++. |=|+|.|+
T Consensus 6 Q~rvk~~aek~g-~eNvvV~lG~aeaEaaglaAETVt~GDPTfAGP 50 (107)
T PRK14717 6 QKRIKELAEKYG-AENIVVILGAAEAEAAGLAAETVTNGDPTFAGP 50 (107)
T ss_pred HHHHHHHHHhcC-CccEEEEecCcchhhccceeeeeccCCCccccc
Confidence 345666666665 5667777765 554432 56999988
No 283
>PRK14991 tetrathionate reductase subunit A; Provisional
Probab=28.13 E-value=1e+02 Score=36.00 Aligned_cols=52 Identities=13% Similarity=0.059 Sum_probs=36.1
Q ss_pred HHhhCCeEEEeccCcch--hhHH---HHHHHHHhCC-CeEEEECCCCCCCC----CcccEEE
Q 016198 320 AAKECDAFLVLGSSLMT--MSAY---RLVRAAHEAG-STIAIVNVGETRAD----DLTTLKI 371 (393)
Q Consensus 320 ~~~~aDllLVvGTSl~V--~p~~---~lv~~a~~~g-a~li~IN~~~t~~d----~~~~l~I 371 (393)
.+.+++++|++|++-.. .|+. +.+..++++| +++|.|++--+... ..++.+|
T Consensus 282 D~~~a~~il~~G~Np~~s~~~~~~~~~~l~~ar~~gg~k~VVVDPr~t~ta~~~A~~Ad~wl 343 (1031)
T PRK14991 282 DWDNVEFALFIGTSPAQSGNPFKRQARQLANARTRGNFEYVVVAPALPLSSSLAAGDNNRWL 343 (1031)
T ss_pred hhhcCcEEEEeCcChhHhCCchHHHHHHHHHHHHcCCCEEEEECCCCCCchhhhhhcCCEEe
Confidence 56799999999998654 3443 3345566665 89999999887632 3455553
No 284
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=28.09 E-value=61 Score=35.25 Aligned_cols=28 Identities=14% Similarity=0.355 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCcC
Q 016198 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (393)
Q Consensus 107 ~~~~~l~~l~~~i~~ak~IVVlTGAGIS 134 (393)
+..+.+++++++|++|++.||+.|.|..
T Consensus 209 ~~~~~v~~~~~~L~~AkrPvI~~G~g~~ 236 (616)
T PRK07418 209 GNPRQINAALKLIEEAERPLLYVGGGAI 236 (616)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCCcC
Confidence 4567899999999999999999999995
No 285
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=27.85 E-value=1.4e+02 Score=32.64 Aligned_cols=56 Identities=14% Similarity=0.191 Sum_probs=45.2
Q ss_pred HHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCCcccEEEECc
Q 016198 319 EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISAR 374 (393)
Q Consensus 319 ~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~~d 374 (393)
..+++-|++|++--|-.+.-..++++.++++|+++|.|--..+++...+|+.|.-.
T Consensus 511 ~~l~~~DvvI~iS~sG~t~e~i~~~~~Ak~~Ga~vIaIT~~~spLa~~aD~~L~~~ 566 (638)
T PRK14101 511 ALLGKGDVIVAVSKSGRAPELLRVLDVAMQAGAKVIAITSSNTPLAKRATVALETD 566 (638)
T ss_pred hcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEcCCCChhHhhCCEEEEcC
Confidence 34678899999998888888899999999999999888765566666777776543
No 286
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=27.55 E-value=76 Score=33.78 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCcCc
Q 016198 107 PSIEDINQLYQFFDNSAKLIVLTGAGIST 135 (393)
Q Consensus 107 ~~~~~l~~l~~~i~~ak~IVVlTGAGISa 135 (393)
+....+++++++|++|++.||+.|.|+..
T Consensus 180 ~~~~~i~~~~~~l~~A~rPvi~~G~g~~~ 208 (539)
T TIGR02418 180 APDDAIDEVAEAIQNAKLPVLLLGLRASS 208 (539)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEECCCcCc
Confidence 34567999999999999999999999964
No 287
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=27.54 E-value=35 Score=26.92 Aligned_cols=10 Identities=30% Similarity=0.767 Sum_probs=4.1
Q ss_pred CcCCCCCCcc
Q 016198 299 PTCQKCNGVL 308 (393)
Q Consensus 299 P~Cp~CGg~L 308 (393)
+.||.|+.+|
T Consensus 31 a~CPdC~~~L 40 (70)
T PF07191_consen 31 AFCPDCGQPL 40 (70)
T ss_dssp EE-TTT-SB-
T ss_pred ccCCCcccHH
Confidence 4566666554
No 288
>PF04606 Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: IPR007684 This entry is represented by Bacteriophage P2, Ogr. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes []. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F [].; GO: 0006355 regulation of transcription, DNA-dependent
Probab=27.34 E-value=26 Score=25.01 Aligned_cols=11 Identities=18% Similarity=0.643 Sum_probs=8.7
Q ss_pred cCCCCCCccCC
Q 016198 300 TCQKCNGVLKP 310 (393)
Q Consensus 300 ~Cp~CGg~LrP 310 (393)
+||+||+.++-
T Consensus 1 ~CP~Cg~~a~i 11 (47)
T PF04606_consen 1 RCPHCGSKARI 11 (47)
T ss_pred CcCCCCCeeEE
Confidence 59999987663
No 289
>PRK08270 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=27.30 E-value=92 Score=34.57 Aligned_cols=9 Identities=33% Similarity=0.778 Sum_probs=7.0
Q ss_pred CcCCCCCCc
Q 016198 299 PTCQKCNGV 307 (393)
Q Consensus 299 P~Cp~CGg~ 307 (393)
-.||+||..
T Consensus 640 ~~CP~CG~~ 648 (656)
T PRK08270 640 EFCPKCGEE 648 (656)
T ss_pred CCCcCCcCc
Confidence 469999965
No 290
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=27.30 E-value=31 Score=26.07 Aligned_cols=12 Identities=33% Similarity=0.792 Sum_probs=9.5
Q ss_pred CcCCCCCCccCC
Q 016198 299 PTCQKCNGVLKP 310 (393)
Q Consensus 299 P~Cp~CGg~LrP 310 (393)
-.||+|||.|-+
T Consensus 42 ~~CPNCgGelv~ 53 (57)
T PF06906_consen 42 GVCPNCGGELVR 53 (57)
T ss_pred CcCcCCCCcccc
Confidence 469999997754
No 291
>PRK15102 trimethylamine N-oxide reductase I catalytic subunit; Provisional
Probab=27.17 E-value=94 Score=35.17 Aligned_cols=46 Identities=9% Similarity=0.201 Sum_probs=31.7
Q ss_pred HhhCCeEEEeccCcch----------hhHHHHHHHHH---hC-CCeEEEECCCCCCCCCc
Q 016198 321 AKECDAFLVLGSSLMT----------MSAYRLVRAAH---EA-GSTIAIVNVGETRADDL 366 (393)
Q Consensus 321 ~~~aDllLVvGTSl~V----------~p~~~lv~~a~---~~-ga~li~IN~~~t~~d~~ 366 (393)
+.++|++|+.|+.... .|...++..++ ++ |+++|.|++..|.....
T Consensus 211 ~~~a~~ii~wG~Np~~s~~~~~~~~~~p~~~~~~~~~~~~~~~gaklIvIDPr~t~tA~~ 270 (825)
T PRK15102 211 LENSKTIVLWGSDPVKNLQVGWNCETHESYAYLAQLKEKVAKGEINVISIDPVVTKTQNY 270 (825)
T ss_pred HHhCCEEEEECCChHHhccCccccCCCcHHHHHHHHHHHhhcCCCEEEEECCCCCchhhh
Confidence 5789999999987632 44444433332 33 69999999998776543
No 292
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=27.09 E-value=1.3e+02 Score=29.98 Aligned_cols=54 Identities=13% Similarity=0.028 Sum_probs=41.5
Q ss_pred HhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEEC-CCCCCCCCcccEEEECc
Q 016198 321 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVN-VGETRADDLTTLKISAR 374 (393)
Q Consensus 321 ~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN-~~~t~~d~~~~l~I~~d 374 (393)
+.+.|++|.+-.|..+......++.+++.|+++|.|- ...++....+|+.|.-.
T Consensus 129 l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tI~IT~~~~s~La~~aD~~I~~~ 183 (299)
T PRK05441 129 LTAKDVVVGIAASGRTPYVIGALEYARERGALTIGISCNPGSPLSKEADIAIEVV 183 (299)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhhHhCCEEEEcC
Confidence 4678999999888889889999999999999966554 34455666677766543
No 293
>PRK06154 hypothetical protein; Provisional
Probab=27.07 E-value=76 Score=34.19 Aligned_cols=30 Identities=7% Similarity=0.203 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCcCcc
Q 016198 107 PSIEDINQLYQFFDNSAKLIVLTGAGISTE 136 (393)
Q Consensus 107 ~~~~~l~~l~~~i~~ak~IVVlTGAGISas 136 (393)
+....+++++++|.+|++.||+.|.|+..+
T Consensus 199 ~~~~~i~~aa~~L~~A~rPvil~G~g~~~~ 228 (565)
T PRK06154 199 ADPVEVVEAAALLLAAERPVIYAGQGVLYA 228 (565)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCCcccc
Confidence 456789999999999999999999999743
No 294
>cd03361 TOPRIM_TopoIA_RevGyr TopoIA_RevGyr : The topoisomerase-primase (TORPIM) domain found in members of the type IA family of DNA topoisomerases (Topo IA) similar to the ATP-dependent reverse gyrase found in archaea and thermophilic bacteria. Type IA DNA topoisomerases remove (relax) negative supercoils in the DNA by: cleaving one strand of the DNA duplex, covalently linking to the 5' phosphoryl end of the DNA break and, allowing the other strand of the duplex to pass through the gap. Reverse gyrase is also able to insert positive supercoils in the presence of ATP and negative supercoils in the presence of AMPPNP. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). For topoisomerases the conserved glutamate is believed to act as a general base in strand joining and, as a general acid in strand cleavage. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=26.94 E-value=90 Score=28.34 Aligned_cols=33 Identities=24% Similarity=0.407 Sum_probs=24.4
Q ss_pred CCCcCCCCCCccCCh--HHHHHHHHHHhhCCeEEE
Q 016198 297 HIPTCQKCNGVLKPD--DRADKAMEAAKECDAFLV 329 (393)
Q Consensus 297 ~iP~Cp~CGg~LrP~--~~~~~a~~~~~~aDllLV 329 (393)
..+.||.|+....++ ..++...+.++++|.+++
T Consensus 90 ~~~~cp~c~~~~~~~~~~~~~~l~~l~~~~~~iii 124 (170)
T cd03361 90 DSDKCPRCGSENIDDKLETLEALRELALEVDEVLI 124 (170)
T ss_pred ccccCCcCCCcCCcchHHHHHHHHHHHhhCCEEEE
Confidence 356899999988777 556666677889995433
No 295
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=26.87 E-value=65 Score=34.91 Aligned_cols=28 Identities=29% Similarity=0.488 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCcC
Q 016198 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (393)
Q Consensus 107 ~~~~~l~~l~~~i~~ak~IVVlTGAGIS 134 (393)
+..+.+++++++|++|++.||+.|.|+.
T Consensus 193 ~~~~~i~~a~~~L~~AkrPvi~~G~g~~ 220 (597)
T PRK08273 193 PYDEDLRRAAEVLNAGRKVAILVGAGAL 220 (597)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECcchH
Confidence 4567899999999999999999999985
No 296
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=26.74 E-value=1e+02 Score=30.22 Aligned_cols=54 Identities=6% Similarity=-0.028 Sum_probs=43.7
Q ss_pred HhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECC-CCCCCCCcccEEEECc
Q 016198 321 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNV-GETRADDLTTLKISAR 374 (393)
Q Consensus 321 ~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~-~~t~~d~~~~l~I~~d 374 (393)
+.+-|++|++-.|-.+....+.++.|+++|+++|-|=- ..+++.+.+++.+.-.
T Consensus 87 ~~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~la~~ad~~l~~~ 141 (321)
T PRK11543 87 IESRDVMLFISYSGGAKELDLIIPRLEDKSIALLAMTGKPTSPLGLAAKAVLDIS 141 (321)
T ss_pred cCCCCEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEEEcC
Confidence 46789999999898898899999999999999877654 4567777788877543
No 297
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=26.63 E-value=75 Score=34.17 Aligned_cols=28 Identities=14% Similarity=0.510 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCcC
Q 016198 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (393)
Q Consensus 107 ~~~~~l~~l~~~i~~ak~IVVlTGAGIS 134 (393)
+....+++++++|.+|++.||+.|.|+-
T Consensus 198 ~~~~~l~~~~~~L~~AkrPvIi~G~g~~ 225 (569)
T PRK09259 198 PAPEAVDRALDLLKKAKRPLIILGKGAA 225 (569)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECcCcc
Confidence 3467899999999999999999999995
No 298
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=26.52 E-value=3.8e+02 Score=23.89 Aligned_cols=47 Identities=17% Similarity=0.220 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECC
Q 016198 312 DRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNV 358 (393)
Q Consensus 312 ~~~~~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~ 358 (393)
+.++++.+.+.++.-+.++|.+..-..+..+......-|.++..++-
T Consensus 21 ~~l~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~ 67 (179)
T cd05005 21 EELDKLISAILNAKRIFVYGAGRSGLVAKAFAMRLMHLGLNVYVVGE 67 (179)
T ss_pred HHHHHHHHHHHhCCeEEEEecChhHHHHHHHHHHHHhCCCeEEEeCC
Confidence 56788888999999999999887766666666655556777777653
No 299
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=26.49 E-value=64 Score=38.21 Aligned_cols=58 Identities=21% Similarity=0.247 Sum_probs=36.1
Q ss_pred CcCCCCCCccCCh--HHHHHHHHHHhhCCeEEEeccCcch---hhHHHHHHHHHh--CCCeEEEEC
Q 016198 299 PTCQKCNGVLKPD--DRADKAMEAAKECDAFLVLGSSLMT---MSAYRLVRAAHE--AGSTIAIVN 357 (393)
Q Consensus 299 P~Cp~CGg~LrP~--~~~~~a~~~~~~aDllLVvGTSl~V---~p~~~lv~~a~~--~ga~li~IN 357 (393)
+.||.|+..-.++ +.++...+.+.+||.++ ++|---. .-++.+...... ...+-+++|
T Consensus 693 ~~~p~~~~~~~~~k~~~~~~lr~l~~~~d~Vi-iATDpDrEGE~Ia~~i~~~l~~~~~~i~R~~f~ 757 (1171)
T TIGR01054 693 ESCPKCGSENIEDSKSIIEILRELAHEVDEVF-IGTDPDTEGEKIGWDLALLLSPYNPNVKRAEFH 757 (1171)
T ss_pred cccccccccccccHHHHHHHHHHHHhcCCEEE-ECCCCCccHHHHHHHHHHHhcccCCCeEEEEEc
Confidence 5799999877777 56777777889999764 4443333 233444444321 235566766
No 300
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=26.27 E-value=79 Score=26.06 Aligned_cols=52 Identities=19% Similarity=0.206 Sum_probs=33.6
Q ss_pred CCCCCHHHHHHHHHHhcCCccEEEEccCcchhhhcCCCceeee--cccceeecCCCCcccch
Q 016198 184 AAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLELH--GTVYTVVCLDCGFSFCR 243 (393)
Q Consensus 184 ~a~Pn~~H~~La~L~~~g~l~~ViTQNIDgLh~rAG~~~ielH--Gs~~~~~C~~C~~~~~~ 243 (393)
...+...|+.|..|++.|.+..+-..|--.. +++. ..-..+.|.+||+..+.
T Consensus 32 ~i~~~TVYR~L~~L~~~Gli~~~~~~~~~~~--------y~~~~~~~h~H~~C~~Cg~i~~~ 85 (116)
T cd07153 32 SISLATVYRTLELLEEAGLVREIELGDGKAR--------YELNTDEHHHHLICTKCGKVIDF 85 (116)
T ss_pred CCCHHHHHHHHHHHHhCCCEEEEEeCCCceE--------EEeCCCCCCCceEeCCCCCEEEe
Confidence 4567788999999999998766544331011 2221 12235899999987653
No 301
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=26.19 E-value=28 Score=22.85 Aligned_cols=10 Identities=30% Similarity=1.002 Sum_probs=3.4
Q ss_pred CCcCCCCCCc
Q 016198 298 IPTCQKCNGV 307 (393)
Q Consensus 298 iP~Cp~CGg~ 307 (393)
+|.||.|+..
T Consensus 2 ~p~Cp~C~se 11 (30)
T PF08274_consen 2 LPKCPLCGSE 11 (30)
T ss_dssp S---TTT---
T ss_pred CCCCCCCCCc
Confidence 5889999864
No 302
>PRK07586 hypothetical protein; Validated
Probab=26.11 E-value=79 Score=33.39 Aligned_cols=29 Identities=7% Similarity=0.064 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCcCc
Q 016198 107 PSIEDINQLYQFFDNSAKLIVLTGAGIST 135 (393)
Q Consensus 107 ~~~~~l~~l~~~i~~ak~IVVlTGAGISa 135 (393)
+....+++++++|.+|++-||+.|.|+..
T Consensus 182 ~~~~~v~~~~~~L~~A~rPvi~~G~g~~~ 210 (514)
T PRK07586 182 VDPAAVEAAAAALRSGEPTVLLLGGRALR 210 (514)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEeCCcccc
Confidence 45678999999999999999999999963
No 303
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=25.93 E-value=70 Score=33.93 Aligned_cols=21 Identities=10% Similarity=0.139 Sum_probs=15.6
Q ss_pred eeeecccceeecCCCCcccch
Q 016198 223 LELHGTVYTVVCLDCGFSFCR 243 (393)
Q Consensus 223 ielHGs~~~~~C~~C~~~~~~ 243 (393)
..--+.....+|..|++.|+.
T Consensus 417 ~~~~~~~~~~~c~~c~~~yd~ 437 (479)
T PRK05452 417 TTTADLGPRMQCSVCQWIYDP 437 (479)
T ss_pred ccccCCCCeEEECCCCeEECC
Confidence 344456677899999998863
No 304
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=25.86 E-value=46 Score=29.41 Aligned_cols=15 Identities=27% Similarity=0.769 Sum_probs=11.5
Q ss_pred cccceeecCCCCccc
Q 016198 227 GTVYTVVCLDCGFSF 241 (393)
Q Consensus 227 Gs~~~~~C~~C~~~~ 241 (393)
|.+--.+|.+||..+
T Consensus 25 ~kl~g~kC~~CG~v~ 39 (140)
T COG1545 25 GKLLGTKCKKCGRVY 39 (140)
T ss_pred CcEEEEEcCCCCeEE
Confidence 455577999999875
No 305
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=25.81 E-value=1.3e+02 Score=26.64 Aligned_cols=67 Identities=12% Similarity=0.149 Sum_probs=45.8
Q ss_pred HHHHHHhhCCeEEEe-ccCcchhhHHHHHHHHHhCCCeEEEECCCCCC--CCC--cccEEEECcHHHHHHHH
Q 016198 316 KAMEAAKECDAFLVL-GSSLMTMSAYRLVRAAHEAGSTIAIVNVGETR--ADD--LTTLKISARLGEILPRV 382 (393)
Q Consensus 316 ~a~~~~~~aDllLVv-GTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~--~d~--~~~l~I~~d~~~vL~~L 382 (393)
+....+++||+++|. |-..+.+-++-=.-+|...|.++|++.+.+-. +-+ .+...+..+.++++.-|
T Consensus 65 RT~~li~~aDvVVvrFGekYKQWNaAfDAg~a~AlgKplI~lh~~~~~HpLKEvda~A~a~~et~~Qvv~iL 136 (141)
T PF11071_consen 65 RTRTLIEKADVVVVRFGEKYKQWNAAFDAGYAAALGKPLITLHPEELHHPLKEVDAAALAVAETPEQVVEIL 136 (141)
T ss_pred HHHHHHhhCCEEEEEechHHHHHHHHhhHHHHHHcCCCeEEecchhccccHHHHhHhhHhhhCCHHHHHHHH
Confidence 444578999998885 99988877776666677789999999887633 211 23344555666665544
No 306
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=25.65 E-value=1.9e+02 Score=23.66 Aligned_cols=46 Identities=13% Similarity=0.195 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECC
Q 016198 313 RADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNV 358 (393)
Q Consensus 313 ~~~~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~ 358 (393)
.++++.+.+.+++-++++|++-....+..+.......|.....+..
T Consensus 2 ~i~~~~~~i~~~~~i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~~~ 47 (139)
T cd05013 2 ALEKAVDLLAKARRIYIFGVGSSGLVAEYLAYKLLRLGKPVVLLSD 47 (139)
T ss_pred HHHHHHHHHHhCCEEEEEEcCchHHHHHHHHHHHHHcCCceEEecC
Confidence 4677888899999999999998777777777777766777666643
No 307
>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....
Probab=25.52 E-value=24 Score=23.78 Aligned_cols=12 Identities=33% Similarity=0.955 Sum_probs=10.2
Q ss_pred cCCCCCCccCCh
Q 016198 300 TCQKCNGVLKPD 311 (393)
Q Consensus 300 ~Cp~CGg~LrP~ 311 (393)
-||.||..|.|.
T Consensus 3 FCp~C~nlL~p~ 14 (35)
T PF02150_consen 3 FCPECGNLLYPK 14 (35)
T ss_dssp BETTTTSBEEEE
T ss_pred eCCCCCccceEc
Confidence 499999999875
No 308
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=25.43 E-value=98 Score=32.02 Aligned_cols=45 Identities=20% Similarity=0.158 Sum_probs=23.7
Q ss_pred cchhhHHHHHHHHHhCCCeEEEECCCCCCCCCcccEEEECcHHHHHHHHHH
Q 016198 334 LMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLD 384 (393)
Q Consensus 334 l~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~~d~~~vL~~L~~ 384 (393)
+++.|..+++..-++.|-....---.++. ++=++..++|...|..
T Consensus 331 ~s~p~~~~vv~~L~~~G~~asrTHf~p~g------iKTda~~~ev~~vl~~ 375 (380)
T COG1867 331 LSAPPLEEVVEALRSAGYEASRTHFSPTG------IKTDAPYEEVEKVLKS 375 (380)
T ss_pred CCCCCHHHHHHHHHhcCceeeeeccCCcc------cccCCCHHHHHHHHHH
Confidence 33477777777666556544443333332 3344556666555544
No 309
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=25.27 E-value=28 Score=25.93 Aligned_cols=17 Identities=24% Similarity=0.565 Sum_probs=9.8
Q ss_pred cCCCCcCCCCCCccCCh
Q 016198 295 DFHIPTCQKCNGVLKPD 311 (393)
Q Consensus 295 ~~~iP~Cp~CGg~LrP~ 311 (393)
+...++||.|+..++-.
T Consensus 21 S~~PatCP~C~a~~~~s 37 (54)
T PF09237_consen 21 SEQPATCPICGAVIRQS 37 (54)
T ss_dssp TS--EE-TTT--EESSH
T ss_pred cCCCCCCCcchhhccch
Confidence 44678999999999876
No 310
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=24.93 E-value=76 Score=34.39 Aligned_cols=28 Identities=11% Similarity=0.437 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHHHcCCcEEEEeCCCcCc
Q 016198 108 SIEDINQLYQFFDNSAKLIVLTGAGIST 135 (393)
Q Consensus 108 ~~~~l~~l~~~i~~ak~IVVlTGAGISa 135 (393)
....+++++++|.+|++.||++|.|+..
T Consensus 188 ~~~~i~~~~~~L~~AkrPvIl~G~g~~~ 215 (588)
T TIGR01504 188 TRAQIEKAVEMLNAAERPLIVAGGGVIN 215 (588)
T ss_pred CHHHHHHHHHHHHhCCCcEEEECCCcch
Confidence 4578999999999999999999999974
No 311
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.86 E-value=1.9e+02 Score=23.34 Aligned_cols=40 Identities=20% Similarity=0.230 Sum_probs=28.4
Q ss_pred HHHHHhhCCeEEEeccCcchhhHHHH-HHHHHhCCCeEEEEC
Q 016198 317 AMEAAKECDAFLVLGSSLMTMSAYRL-VRAAHEAGSTIAIVN 357 (393)
Q Consensus 317 a~~~~~~aDllLVvGTSl~V~p~~~l-v~~a~~~ga~li~IN 357 (393)
....+.++|+||++ |+..-+-+... -+.+++.|.|++..+
T Consensus 42 l~~~i~~aD~VIv~-t~~vsH~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 42 LPSKIKKADLVIVF-TDYVSHNAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred HHHhcCCCCEEEEE-eCCcChHHHHHHHHHHHHcCCcEEEEC
Confidence 45578999999887 55544554444 445778899999887
No 312
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=24.86 E-value=3.8e+02 Score=23.73 Aligned_cols=47 Identities=13% Similarity=0.171 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECC
Q 016198 312 DRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNV 358 (393)
Q Consensus 312 ~~~~~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~ 358 (393)
+.++++.+.+.++.-+.++|.+..-..+..+......-|.....+..
T Consensus 18 ~~~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~ 64 (179)
T TIGR03127 18 EELDKLADKIIKAKRIFVAGAGRSGLVGKAFAMRLMHLGFNVYVVGE 64 (179)
T ss_pred HHHHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHHhCCCeEEEeCC
Confidence 56788889999999999999987776666666666666777666643
No 313
>PRK08617 acetolactate synthase; Reviewed
Probab=24.82 E-value=86 Score=33.49 Aligned_cols=28 Identities=36% Similarity=0.421 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCcC
Q 016198 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (393)
Q Consensus 107 ~~~~~l~~l~~~i~~ak~IVVlTGAGIS 134 (393)
+..+.+++++++|.+|++.||+.|.|+.
T Consensus 186 ~~~~~i~~~~~~L~~AkrPvi~~G~g~~ 213 (552)
T PRK08617 186 ASPEDINYLAELIKNAKLPVLLLGMRAS 213 (552)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 3456799999999999999999999974
No 314
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=24.73 E-value=75 Score=32.03 Aligned_cols=44 Identities=25% Similarity=0.579 Sum_probs=27.9
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEeCCCcCccCCCCCcCCCCC
Q 016198 98 KKAVPDADPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNG 147 (393)
Q Consensus 98 ~~~~p~~~~~~~~~l~~l~~~i~~ak~IVVlTGAGISasSGIPdFRs~~G 147 (393)
|+++|-..|...-+.+.+..++. ...|+|++|-| |||-|...+.
T Consensus 161 RrvV~SP~P~~ive~~aI~~LLe-~G~IvI~~GgG-----GiPV~~~~g~ 204 (313)
T PRK12454 161 RRVVPSPDPLGIVEIEVIKALVE-NGFIVIASGGG-----GIPVIEEDGE 204 (313)
T ss_pred EEEeCCCCCccccCHHHHHHHHH-CCCEEEEeCCC-----ccceEcCCCc
Confidence 45566444444445556666555 68899999887 8888765433
No 315
>KOG3954 consensus Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=24.72 E-value=87 Score=31.08 Aligned_cols=58 Identities=12% Similarity=0.166 Sum_probs=43.3
Q ss_pred CeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCC-CCCCcccEEEECcHHHHHHHHHHhCC
Q 016198 325 DAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGET-RADDLTTLKISARLGEILPRVLDVGS 387 (393)
Q Consensus 325 DllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t-~~d~~~~l~I~~d~~~vL~~L~~~~~ 387 (393)
.|.|.+|.|..++=.+.| +...-++-||.++. ++=..+|+-|.+|.=+++|+|.+.|.
T Consensus 276 eLYiAvGisGAIQHLAGm-----KDSKvIvAINkDpdAPIFqvAD~GlvgDLfkiVPELtekL~ 334 (336)
T KOG3954|consen 276 ELYIAVGISGAIQHLAGM-----KDSKVIVAINKDPDAPIFQVADYGLVGDLFKIVPELTEKLP 334 (336)
T ss_pred ceEEEEeccHHHHHhhcC-----ccceEEEEecCCCCCCceeeecccchhhHHHHhHHHHHhcc
Confidence 477888888766544443 22345788998874 45567899999999999999998764
No 316
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=24.72 E-value=83 Score=34.23 Aligned_cols=29 Identities=14% Similarity=0.370 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCcCc
Q 016198 107 PSIEDINQLYQFFDNSAKLIVLTGAGIST 135 (393)
Q Consensus 107 ~~~~~l~~l~~~i~~ak~IVVlTGAGISa 135 (393)
+..+.+++++++|.+|++.||+.|.|+..
T Consensus 216 p~~~~i~~~~~~L~~AkrPlIl~G~g~~~ 244 (612)
T PRK07789 216 PHGKQIREAAKLIAAARRPVLYVGGGVIR 244 (612)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCCccc
Confidence 34577999999999999999999999953
No 317
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=24.68 E-value=80 Score=33.99 Aligned_cols=29 Identities=21% Similarity=0.253 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHcCCcEEEEeCCCcCcc
Q 016198 108 SIEDINQLYQFFDNSAKLIVLTGAGISTE 136 (393)
Q Consensus 108 ~~~~l~~l~~~i~~ak~IVVlTGAGISas 136 (393)
..+.+++++++|.+|++.||+.|.|+..+
T Consensus 192 ~~~~i~~a~~~L~~A~rPvi~~G~g~~~~ 220 (574)
T PRK07979 192 HKGQIKRALQTLVAAKKPVVYVGGGAINA 220 (574)
T ss_pred CHHHHHHHHHHHHcCCCCEEEECCCcccc
Confidence 45779999999999999999999999644
No 318
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=24.66 E-value=70 Score=32.12 Aligned_cols=45 Identities=18% Similarity=0.446 Sum_probs=30.4
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEeCCCcCccCCCCCcCCCCC
Q 016198 97 DKKAVPDADPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNG 147 (393)
Q Consensus 97 ~~~~~p~~~~~~~~~l~~l~~~i~~ak~IVVlTGAGISasSGIPdFRs~~G 147 (393)
-|+++|-..|......+.+.++|. ...+||.+|.| |||.+.+.+.
T Consensus 157 ~rrvv~sp~p~~iv~~~~I~~LL~-~G~iVI~~ggg-----giPvi~e~~~ 201 (310)
T TIGR00746 157 WRRVVPSPRPKDIVEAETIKTLVE-NGVIVISSGGG-----GVPVVLEGAE 201 (310)
T ss_pred ceEeecCCCchhhccHHHHHHHHH-CCCEEEeCCCC-----CcCEEecCCe
Confidence 356777555555556666666666 45788888877 8999886443
No 319
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=24.58 E-value=18 Score=32.70 Aligned_cols=52 Identities=21% Similarity=0.222 Sum_probs=31.9
Q ss_pred HHHHHHHHHhc----CCccEEEEccCcchhhhcCCCc--eeeecccceeecCCCCcccc
Q 016198 190 AHFALASLEKA----GRIDCMITQNVDRLHHRAGSNP--LELHGTVYTVVCLDCGFSFC 242 (393)
Q Consensus 190 ~H~~La~L~~~----g~l~~ViTQNIDgLh~rAG~~~--ielHGs~~~~~C~~C~~~~~ 242 (393)
+|+.+-..-+. |+....+-+.||||--..-..- -.+.|.-+..+|. |++.+.
T Consensus 70 aHl~ly~~~gr~~phg~ewk~lm~qV~~l~~~~~h~~~~~~v~~~~~~Y~C~-C~q~~l 127 (156)
T COG3091 70 AHLHLYQEFGRYKPHGKEWKLLMQQVLGLRFCRTHQFEVQSVRRTTYPYRCQ-CQQHYL 127 (156)
T ss_pred HHHHHHHHcCCCCCCchhHHHHHHHhCCCCCCccchHHHhhccccceeEEee-cCCccc
Confidence 46655554432 4445556778888864442221 4456688889999 998754
No 320
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=24.40 E-value=84 Score=34.12 Aligned_cols=28 Identities=18% Similarity=0.457 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCcC
Q 016198 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (393)
Q Consensus 107 ~~~~~l~~l~~~i~~ak~IVVlTGAGIS 134 (393)
+..+.+++++++|.+|++.||+.|.|+.
T Consensus 197 ~~~~~l~~a~~~L~~A~rPvil~G~g~~ 224 (595)
T PRK09107 197 GDAEAITEAVELLANAKRPVIYSGGGVI 224 (595)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEECCccc
Confidence 4456899999999999999999999985
No 321
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=24.29 E-value=1.5e+02 Score=32.74 Aligned_cols=61 Identities=18% Similarity=0.218 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhhCCeEEEecc--CcchhhHHHHHHHHHhCCCeEEEECCCCC----CCCCcccEEEECcH
Q 016198 312 DRADKAMEAAKECDAFLVLGS--SLMTMSAYRLVRAAHEAGSTIAIVNVGET----RADDLTTLKISARL 375 (393)
Q Consensus 312 ~~~~~a~~~~~~aDllLVvGT--Sl~V~p~~~lv~~a~~~ga~li~IN~~~t----~~d~~~~l~I~~d~ 375 (393)
.|.+++.+.+.++|++||||. |-++ .+|++-+++.|.+.+.|+.... -+.....+-|.+.+
T Consensus 195 ~Rq~a~~~la~~~d~~~vvGg~~SsNt---~~L~~i~~~~~~~~~~ie~~~el~~~~~~~~~~vgitaga 261 (647)
T PRK00087 195 VRQEAAEKLAKKVDVMIVVGGKNSSNT---TKLYEICKSNCTNTIHIENAGELPEEWFKGVKIIGVTAGA 261 (647)
T ss_pred hHHHHHHHHHhhCCEEEEECCCCCccH---HHHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEecc
Confidence 567778888899999999996 4444 4566666666888888885431 23333345566544
No 322
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=24.16 E-value=88 Score=33.76 Aligned_cols=30 Identities=10% Similarity=0.342 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCcCcc
Q 016198 107 PSIEDINQLYQFFDNSAKLIVLTGAGISTE 136 (393)
Q Consensus 107 ~~~~~l~~l~~~i~~ak~IVVlTGAGISas 136 (393)
+....+++++++|.+|++.||+.|.|+..+
T Consensus 199 ~~~~~~~~~~~~L~~A~rPvIl~G~g~~~~ 228 (570)
T PRK06725 199 PDSMKLREVAKAISKAKRPLLYIGGGVIHS 228 (570)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECCCcccc
Confidence 445679999999999999999999999543
No 323
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=24.12 E-value=82 Score=33.94 Aligned_cols=29 Identities=10% Similarity=0.313 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCcCc
Q 016198 107 PSIEDINQLYQFFDNSAKLIVLTGAGIST 135 (393)
Q Consensus 107 ~~~~~l~~l~~~i~~ak~IVVlTGAGISa 135 (393)
+....+++++++|.+|++.||++|.|...
T Consensus 181 ~~~~~i~~~~~~L~~A~rP~i~~G~g~~~ 209 (579)
T TIGR03457 181 GGATSLAQAARLLAEAKFPVIISGGGVVM 209 (579)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECcCccc
Confidence 34567999999999999999999999964
No 324
>PRK08271 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=23.71 E-value=95 Score=34.29 Aligned_cols=8 Identities=25% Similarity=0.862 Sum_probs=6.3
Q ss_pred CcCCCCCC
Q 016198 299 PTCQKCNG 306 (393)
Q Consensus 299 P~Cp~CGg 306 (393)
-.||+||.
T Consensus 581 ~~CP~CGs 588 (623)
T PRK08271 581 KRCPICGS 588 (623)
T ss_pred cCCcCCCC
Confidence 46999985
No 325
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=23.69 E-value=86 Score=33.73 Aligned_cols=29 Identities=24% Similarity=0.507 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCcCc
Q 016198 107 PSIEDINQLYQFFDNSAKLIVLTGAGIST 135 (393)
Q Consensus 107 ~~~~~l~~l~~~i~~ak~IVVlTGAGISa 135 (393)
+....+++++++|.+|++.||+.|.|+..
T Consensus 195 ~~~~~i~~~~~~L~~A~rPvil~G~g~~~ 223 (566)
T PRK07282 195 PNDMQIKKILKQLSKAKKPVILAGGGINY 223 (566)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECCCcCc
Confidence 34567999999999999999999999953
No 326
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=23.64 E-value=36 Score=27.79 Aligned_cols=14 Identities=36% Similarity=0.612 Sum_probs=12.0
Q ss_pred cEEEEeCCCcCccC
Q 016198 124 KLIVLTGAGISTEC 137 (393)
Q Consensus 124 ~IVVlTGAGISasS 137 (393)
+|++.+|+|++|+.
T Consensus 4 kILvvCgsG~~TS~ 17 (94)
T PRK10310 4 KIIVACGGAVATST 17 (94)
T ss_pred eEEEECCCchhHHH
Confidence 68999999998875
No 327
>PRK12352 putative carbamate kinase; Reviewed
Probab=23.59 E-value=74 Score=32.06 Aligned_cols=44 Identities=23% Similarity=0.479 Sum_probs=28.4
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEeCCCcCccCCCCCcCCCCC
Q 016198 98 KKAVPDADPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNG 147 (393)
Q Consensus 98 ~~~~p~~~~~~~~~l~~l~~~i~~ak~IVVlTGAGISasSGIPdFRs~~G 147 (393)
|+++|-..|...-+.+.+..+ -++..|||.+|-| |||-..+..|
T Consensus 162 rrvv~sp~pv~~V~~~~I~~l-l~~g~iVi~~ggg-----giPv~~~~~g 205 (316)
T PRK12352 162 RRVVASPEPKRIVEAPAIKAL-IQQGFVVIGAGGG-----GIPVVRTDAG 205 (316)
T ss_pred EEecCCCCCceEEcHHHHHHH-HHCCCEEEecCCC-----CCCEEeCCCC
Confidence 456664444443344444444 4578899999888 8998877664
No 328
>PRK07064 hypothetical protein; Provisional
Probab=23.58 E-value=90 Score=33.19 Aligned_cols=39 Identities=15% Similarity=0.273 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCcCcc---------CCCCCcCCC
Q 016198 107 PSIEDINQLYQFFDNSAKLIVLTGAGISTE---------CGIPDYRSP 145 (393)
Q Consensus 107 ~~~~~l~~l~~~i~~ak~IVVlTGAGISas---------SGIPdFRs~ 145 (393)
+..+.+++++++|.+|++.||++|.|+.-+ .|+|-+-..
T Consensus 188 ~~~~~i~~~~~~l~~AkrPvi~~G~g~~~a~~~l~~lae~~~pv~~t~ 235 (544)
T PRK07064 188 PDAAAVAELAERLAAARRPLLWLGGGARHAGAEVKRLVDLGFGVVTST 235 (544)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCChHhHHHHHHHHHHcCCCEEEcc
Confidence 456789999999999999999999998421 677755443
No 329
>PRK12474 hypothetical protein; Provisional
Probab=23.40 E-value=89 Score=33.17 Aligned_cols=57 Identities=12% Similarity=0.157 Sum_probs=32.1
Q ss_pred HHHHHhhCCeEEEeccCcchhhHHHHHH---HHHhCCCeEEEECCCCCCCCCcccEEEECcHHHHHHHHHHhC
Q 016198 317 AMEAAKECDAFLVLGSSLMTMSAYRLVR---AAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 317 a~~~~~~aDllLVvGTSl~V~p~~~lv~---~a~~~ga~li~IN~~~t~~d~~~~l~I~~d~~~vL~~L~~~~ 386 (393)
+.+.+++||++|+||+.+... ...... ......++++.++. ..+|+.++|..|++.+
T Consensus 260 ~~~~~~~aDlvl~lG~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~------------~~~d~~~~l~~L~~~l 319 (518)
T PRK12474 260 ITAFLKDVEQLVLVGAKPPVS-FFAYPGKPSWGAPPGCEIVYLAQ------------PDEDLAQALQDLADAV 319 (518)
T ss_pred HHHHHhhCCEEEEECCCCCcc-ccccCCCccccCCCCCEEEEECC------------CCcCHHHHHHHHHHhc
Confidence 345788999999999986321 000000 00011344544442 1268888998887755
No 330
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=23.36 E-value=44 Score=30.99 Aligned_cols=15 Identities=27% Similarity=0.538 Sum_probs=11.5
Q ss_pred CCCCcCCCCCCccCC
Q 016198 296 FHIPTCQKCNGVLKP 310 (393)
Q Consensus 296 ~~iP~Cp~CGg~LrP 310 (393)
....+|++||.++.+
T Consensus 155 ~e~rtC~~CG~v~~~ 169 (177)
T PRK13264 155 EELRTCDNCGTVHPG 169 (177)
T ss_pred HhhccCCcCCcccCc
Confidence 356799999987654
No 331
>PRK11269 glyoxylate carboligase; Provisional
Probab=23.19 E-value=1e+02 Score=33.39 Aligned_cols=28 Identities=11% Similarity=0.447 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCcC
Q 016198 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (393)
Q Consensus 107 ~~~~~l~~l~~~i~~ak~IVVlTGAGIS 134 (393)
+....+++++++|.+|++.||+.|.|+.
T Consensus 188 ~~~~~i~~~~~~L~~AkrPvil~G~g~~ 215 (591)
T PRK11269 188 ATRAQIEKALEMLNAAERPLIVAGGGVI 215 (591)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEECCCCc
Confidence 3456899999999999999999999985
No 332
>PRK14715 DNA polymerase II large subunit; Provisional
Probab=23.16 E-value=81 Score=37.74 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=19.2
Q ss_pred CcCCCCCCccCCh----------HHHHHHHHHHhhCC
Q 016198 299 PTCQKCNGVLKPD----------DRADKAMEAAKECD 325 (393)
Q Consensus 299 P~Cp~CGg~LrP~----------~~~~~a~~~~~~aD 325 (393)
.+||.||+..... +.+.+|++.+....
T Consensus 687 ~~Cp~CG~~~~~~~~~~~~i~~~~~~~~A~~~v~~~~ 723 (1627)
T PRK14715 687 HVCPFCGTRVELKPYARREIPPKDYWYAALENLKINK 723 (1627)
T ss_pred ccCcccCCcccCCCccceecCHHHHHHHHHHHhCCCC
Confidence 6799999755444 66788888775544
No 333
>TIGR00354 polC DNA polymerase, archaeal type II, large subunit. This model represents the large subunit, DP2, of a two subunit novel Archaeal replicative DNA polymerase first characterized for Pyrococcus furiosus. Structure of DP2 appears to be organized as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.
Probab=23.08 E-value=84 Score=36.30 Aligned_cols=27 Identities=15% Similarity=0.299 Sum_probs=20.0
Q ss_pred CcCCCCCCccCCh----------HHHHHHHHHHhhCC
Q 016198 299 PTCQKCNGVLKPD----------DRADKAMEAAKECD 325 (393)
Q Consensus 299 P~Cp~CGg~LrP~----------~~~~~a~~~~~~aD 325 (393)
.+||.||+...|. +.+.+|++.+....
T Consensus 638 ~rCP~CG~~Te~~~pc~~~i~l~~~~~~A~~~lg~~~ 674 (1095)
T TIGR00354 638 LKCPVCGELTEQLYYGKRKVDLRELYEEAIANLGEYK 674 (1095)
T ss_pred ccCCCCCCccccccceeEEecHHHHHHHHHHHhCCCC
Confidence 5799999876554 66788888776554
No 334
>PF14419 SPOUT_MTase_2: AF2226-like SPOUT RNA Methylase fused to THUMP
Probab=22.84 E-value=89 Score=28.64 Aligned_cols=29 Identities=24% Similarity=0.381 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHcCCcEEEEeCCCcCccCCCCC
Q 016198 109 IEDINQLYQFFDNSAKLIVLTGAGISTECGIPD 141 (393)
Q Consensus 109 ~~~l~~l~~~i~~ak~IVVlTGAGISasSGIPd 141 (393)
..--++|++.|+.++.++|+.|+- -|||.
T Consensus 107 s~vk~~L~~~~r~~~eV~v~iGSR----eGiP~ 135 (173)
T PF14419_consen 107 SEVKDKLAEDLRYAKEVVVFIGSR----EGIPR 135 (173)
T ss_pred HHHHHHHHHHHhhCcEEEEEEEcc----cCCCh
Confidence 344578999999999999999986 57874
No 335
>PRK05978 hypothetical protein; Provisional
Probab=22.79 E-value=47 Score=29.87 Aligned_cols=14 Identities=14% Similarity=0.539 Sum_probs=10.8
Q ss_pred CCcCCCCCCccCCh
Q 016198 298 IPTCQKCNGVLKPD 311 (393)
Q Consensus 298 iP~Cp~CGg~LrP~ 311 (393)
.++|++||-.+...
T Consensus 52 ~~~C~~CG~~~~~~ 65 (148)
T PRK05978 52 VDHCAACGEDFTHH 65 (148)
T ss_pred CCCccccCCccccC
Confidence 46899999877655
No 336
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=22.66 E-value=90 Score=33.60 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHcCCcEEEEeCCCcC
Q 016198 108 SIEDINQLYQFFDNSAKLIVLTGAGIS 134 (393)
Q Consensus 108 ~~~~l~~l~~~i~~ak~IVVlTGAGIS 134 (393)
....+++++++|.+|++.||++|.|..
T Consensus 192 ~~~~i~~~~~~L~~A~rPvil~G~g~~ 218 (572)
T PRK08979 192 HKGQIKRGLQALLAAKKPVLYVGGGAI 218 (572)
T ss_pred CHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 456899999999999999999999995
No 337
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=22.58 E-value=1e+02 Score=32.78 Aligned_cols=28 Identities=14% Similarity=0.345 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCcC
Q 016198 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (393)
Q Consensus 107 ~~~~~l~~l~~~i~~ak~IVVlTGAGIS 134 (393)
+..+.+++++++|.+|++.||+.|.|..
T Consensus 191 ~~~~~~~~~~~~L~~AkrPvIl~G~g~~ 218 (530)
T PRK07092 191 PDPAALARLGDALDAARRPALVVGPAVD 218 (530)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECCCcc
Confidence 4456899999999999999999999985
No 338
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=22.46 E-value=36 Score=22.94 Aligned_cols=10 Identities=40% Similarity=1.082 Sum_probs=4.7
Q ss_pred cCCCCCCccC
Q 016198 300 TCQKCNGVLK 309 (393)
Q Consensus 300 ~Cp~CGg~Lr 309 (393)
.||.||+.|.
T Consensus 2 fC~~CG~~l~ 11 (34)
T PF14803_consen 2 FCPQCGGPLE 11 (34)
T ss_dssp B-TTT--B-E
T ss_pred ccccccChhh
Confidence 4999999875
No 339
>PRK09462 fur ferric uptake regulator; Provisional
Probab=22.46 E-value=1.3e+02 Score=26.40 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=33.4
Q ss_pred CCCCCHHHHHHHHHHhcCCccEEEEccCcchhhhcCCCceeeecccceeecCCCCcccch
Q 016198 184 AAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLELHGTVYTVVCLDCGFSFCR 243 (393)
Q Consensus 184 ~a~Pn~~H~~La~L~~~g~l~~ViTQNIDgLh~rAG~~~ielHGs~~~~~C~~C~~~~~~ 243 (393)
...+...|+.|..|++.|.+..+-..|--..++.. .- +.-..+.|.+||+..+.
T Consensus 49 ~i~~aTVYR~L~~L~e~Gli~~~~~~~~~~~y~~~---~~---~~H~H~iC~~Cg~i~~i 102 (148)
T PRK09462 49 EIGLATVYRVLNQFDDAGIVTRHNFEGGKSVFELT---QQ---HHHDHLICLDCGKVIEF 102 (148)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEcCCCcEEEEeC---CC---CCCCceEECCCCCEEEe
Confidence 45567889999999999987665544411122111 00 11135899999987653
No 340
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=22.31 E-value=89 Score=33.61 Aligned_cols=28 Identities=14% Similarity=0.474 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCcC
Q 016198 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (393)
Q Consensus 107 ~~~~~l~~l~~~i~~ak~IVVlTGAGIS 134 (393)
+....+++++++|.+|++.||++|.|+.
T Consensus 198 ~~~~~i~~~~~~L~~AkrPvil~G~g~~ 225 (578)
T PRK06112 198 PAPQRLAEAASLLAQAQRPVVVAGGGVH 225 (578)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECCCcc
Confidence 3456799999999999999999999975
No 341
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.31 E-value=48 Score=35.39 Aligned_cols=13 Identities=15% Similarity=0.197 Sum_probs=9.8
Q ss_pred CCCcCCCCCCccC
Q 016198 297 HIPTCQKCNGVLK 309 (393)
Q Consensus 297 ~iP~Cp~CGg~Lr 309 (393)
....|+.||....
T Consensus 239 ~~l~Ch~Cg~~~~ 251 (505)
T TIGR00595 239 GKLRCHYCGYQEP 251 (505)
T ss_pred CeEEcCCCcCcCC
Confidence 3468999998766
No 342
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=22.25 E-value=29 Score=22.59 Aligned_cols=13 Identities=31% Similarity=0.767 Sum_probs=7.3
Q ss_pred CcCCCCCCccCCh
Q 016198 299 PTCQKCNGVLKPD 311 (393)
Q Consensus 299 P~Cp~CGg~LrP~ 311 (393)
..|+.||+++++.
T Consensus 4 rfC~~CG~~t~~~ 16 (32)
T PF09297_consen 4 RFCGRCGAPTKPA 16 (32)
T ss_dssp SB-TTT--BEEE-
T ss_pred cccCcCCccccCC
Confidence 4699999998875
No 343
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=22.19 E-value=1e+02 Score=33.14 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCcCc
Q 016198 107 PSIEDINQLYQFFDNSAKLIVLTGAGIST 135 (393)
Q Consensus 107 ~~~~~l~~l~~~i~~ak~IVVlTGAGISa 135 (393)
+....+++++++|++|++.||+.|.|+..
T Consensus 205 ~~~~~~~~~~~~L~~AkrPvi~~G~g~~~ 233 (569)
T PRK08327 205 PDPEDIARAAEMLAAAERPVIITWRAGRT 233 (569)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEecccCC
Confidence 45678999999999999999999999963
No 344
>PLN02470 acetolactate synthase
Probab=22.18 E-value=89 Score=33.76 Aligned_cols=28 Identities=21% Similarity=0.477 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCcC
Q 016198 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (393)
Q Consensus 107 ~~~~~l~~l~~~i~~ak~IVVlTGAGIS 134 (393)
+..+.+++++++|.+|++.||++|.|+.
T Consensus 200 ~~~~~i~~~~~~L~~A~rPvI~~G~g~~ 227 (585)
T PLN02470 200 PEKSQLEQIVRLISESKRPVVYVGGGCL 227 (585)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEECCChh
Confidence 3457899999999999999999999985
No 345
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=22.06 E-value=55 Score=34.44 Aligned_cols=12 Identities=33% Similarity=0.916 Sum_probs=9.2
Q ss_pred eeecCCCCcccc
Q 016198 231 TVVCLDCGFSFC 242 (393)
Q Consensus 231 ~~~C~~C~~~~~ 242 (393)
...|..|++.++
T Consensus 7 ~f~C~~CG~~s~ 18 (456)
T COG1066 7 AFVCQECGYVSP 18 (456)
T ss_pred EEEcccCCCCCc
Confidence 468999998653
No 346
>PF11290 DUF3090: Protein of unknown function (DUF3090); InterPro: IPR021441 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=22.04 E-value=46 Score=30.63 Aligned_cols=14 Identities=36% Similarity=0.918 Sum_probs=12.0
Q ss_pred CCcCCCCCCccCCh
Q 016198 298 IPTCQKCNGVLKPD 311 (393)
Q Consensus 298 iP~Cp~CGg~LrP~ 311 (393)
=|.||.||.+|.|.
T Consensus 154 RP~CPlCg~PlDP~ 167 (171)
T PF11290_consen 154 RPPCPLCGEPLDPE 167 (171)
T ss_pred CCCCCCCCCCCCCC
Confidence 37899999999885
No 347
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=22.03 E-value=95 Score=33.33 Aligned_cols=29 Identities=14% Similarity=0.212 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHcCCcEEEEeCCCcCcc
Q 016198 108 SIEDINQLYQFFDNSAKLIVLTGAGISTE 136 (393)
Q Consensus 108 ~~~~l~~l~~~i~~ak~IVVlTGAGISas 136 (393)
..+.+++++++|.+|++.||++|.|+..+
T Consensus 189 ~~~~i~~~~~~L~~A~rPviv~G~g~~~~ 217 (563)
T PRK08527 189 NSRQIKKAAEAIKEAKKPLFYLGGGAILS 217 (563)
T ss_pred CHHHHHHHHHHHHcCCCCEEEECCCcccc
Confidence 45789999999999999999999999643
No 348
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
Probab=21.87 E-value=1.9e+02 Score=30.78 Aligned_cols=45 Identities=24% Similarity=0.294 Sum_probs=31.9
Q ss_pred HHHHHHHHHH-hhCCeEEEecc--CcchhhHHHHHHHHHhCCCeEEEECCC
Q 016198 312 DRADKAMEAA-KECDAFLVLGS--SLMTMSAYRLVRAAHEAGSTIAIVNVG 359 (393)
Q Consensus 312 ~~~~~a~~~~-~~aDllLVvGT--Sl~V~p~~~lv~~a~~~ga~li~IN~~ 359 (393)
+|.+++.+.. +++|++||||- |-++ .+|.+-+.+.|.+.+.|+..
T Consensus 350 eRQdA~~~L~~~~vDlmiVVGG~NSSNT---~~L~eIa~~~g~~sy~Ie~~ 397 (460)
T PLN02821 350 ERQDAMYKLVEEKLDLMLVVGGWNSSNT---SHLQEIAEHKGIPSYWIDSE 397 (460)
T ss_pred HHHHHHHHHhhcCCCEEEEECCCCCccH---HHHHHHHHHhCCCEEEECCH
Confidence 5666666664 68999999994 4444 35555566668888999854
No 349
>PRK08392 hypothetical protein; Provisional
Probab=21.84 E-value=1.8e+02 Score=27.13 Aligned_cols=50 Identities=10% Similarity=0.203 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCC
Q 016198 312 DRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRA 363 (393)
Q Consensus 312 ~~~~~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~ 363 (393)
+.+++..+.+.+.+..|+|-|+. -+|...+++.+++.|++ +.+|-+....
T Consensus 137 ~~~~~i~~~~~~~g~~lEiNt~~-~~p~~~~l~~~~~~G~~-~~igSDAH~~ 186 (215)
T PRK08392 137 EELKEILDLAEAYGKAFEISSRY-RVPDLEFIRECIKRGIK-LTFASDAHRP 186 (215)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCC-CCCCHHHHHHHHHcCCE-EEEeCCCCCh
Confidence 56788889999999999999864 47888899999999987 6888665543
No 350
>cd02756 MopB_Arsenite-Ox Arsenite oxidase (Arsenite-Ox) oxidizes arsenite to the less toxic arsenate; it transfers the electrons obtained from the oxidation of arsenite towards the soluble periplasmic electron carriers cytochrome c and/or amicyanin. Arsenite oxidase is a heterodimeric enzyme containing a large and a small subunit. The large catalytic subunit harbors the molybdopterin cofactor and the [3Fe-4S] cluster; and the small subunit belongs to the structural class of the Rieske proteins. The small subunit is not included in this alignment. Members of MopB_Arsenite-Ox CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=21.74 E-value=1.5e+02 Score=33.04 Aligned_cols=51 Identities=20% Similarity=0.297 Sum_probs=33.0
Q ss_pred HHHHhhCCeEEEeccCcc-hhhHH---HHHH-----------HHHhCC-----CeEEEECCCCCCCCCccc
Q 016198 318 MEAAKECDAFLVLGSSLM-TMSAY---RLVR-----------AAHEAG-----STIAIVNVGETRADDLTT 368 (393)
Q Consensus 318 ~~~~~~aDllLVvGTSl~-V~p~~---~lv~-----------~a~~~g-----a~li~IN~~~t~~d~~~~ 368 (393)
.+.++.+|++|++|+... +.|.. .++. .+.++| +++|.|++..|.....++
T Consensus 218 ~~Die~Ad~Il~~G~Np~et~pv~~~~~~~~~l~~~~~~~kk~~~~~G~~~~~~klIVVDPR~T~TA~~Ad 288 (676)
T cd02756 218 YEDARLADTIVLWGNNPYETQTVYFLNHWLPNLRGATVSEKQQWFPPGEPVPPGRIIVVDPRRTETVHAAE 288 (676)
T ss_pred HHHHHhCCEEEEECCChHHhCcchHhhhhhhhhhhHHHHHHHhhhhcCCCCCCCEEEEEeCCCcchhHhhh
Confidence 345789999999998743 34432 2221 011234 699999999888766554
No 351
>PRK08322 acetolactate synthase; Reviewed
Probab=21.60 E-value=1.1e+02 Score=32.47 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCcC
Q 016198 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (393)
Q Consensus 107 ~~~~~l~~l~~~i~~ak~IVVlTGAGIS 134 (393)
+..+.+++++++|.+|++.||++|.|+.
T Consensus 181 ~~~~~i~~~~~~l~~A~rPviv~G~g~~ 208 (547)
T PRK08322 181 ASPKAIERAAEAIQAAKNPLILIGAGAN 208 (547)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEECCCcc
Confidence 3457899999999999999999999985
No 352
>COG0375 HybF Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) [General function prediction only]
Probab=21.50 E-value=59 Score=28.05 Aligned_cols=12 Identities=42% Similarity=0.841 Sum_probs=8.4
Q ss_pred eeecCCCCcccc
Q 016198 231 TVVCLDCGFSFC 242 (393)
Q Consensus 231 ~~~C~~C~~~~~ 242 (393)
...|.+|+..+.
T Consensus 70 ~~~C~~C~~~~~ 81 (115)
T COG0375 70 ECWCLDCGQEVE 81 (115)
T ss_pred EEEeccCCCeec
Confidence 458889976543
No 353
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=21.49 E-value=1.1e+02 Score=32.72 Aligned_cols=28 Identities=14% Similarity=0.356 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCcC
Q 016198 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (393)
Q Consensus 107 ~~~~~l~~l~~~i~~ak~IVVlTGAGIS 134 (393)
+..+.+++++++|.+|++.||+.|.|+.
T Consensus 181 ~~~~~l~~~~~~L~~AkrPvIl~G~g~~ 208 (548)
T PRK08978 181 FPAAELEQARALLAQAKKPVLYVGGGVG 208 (548)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEECCCcc
Confidence 4456799999999999999999999985
No 354
>COG1933 Archaeal DNA polymerase II, large subunit [DNA replication, recombination, and repair]
Probab=21.39 E-value=34 Score=33.16 Aligned_cols=11 Identities=27% Similarity=0.570 Sum_probs=8.5
Q ss_pred CCCcCCCCCCc
Q 016198 297 HIPTCQKCNGV 307 (393)
Q Consensus 297 ~iP~Cp~CGg~ 307 (393)
..-+|++|||-
T Consensus 182 l~g~c~kcg~~ 192 (253)
T COG1933 182 LDGKCPICGGK 192 (253)
T ss_pred ccccccccCCe
Confidence 34679999993
No 355
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=21.38 E-value=1.1e+02 Score=32.75 Aligned_cols=28 Identities=18% Similarity=0.326 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCcC
Q 016198 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (393)
Q Consensus 107 ~~~~~l~~l~~~i~~ak~IVVlTGAGIS 134 (393)
+....++++++.|.+|++.||++|.|+-
T Consensus 192 ~~~~~~~~~~~~L~~A~rPvil~G~g~~ 219 (572)
T PRK06456 192 IDRLALKKAAEILINAERPIILVGTGVV 219 (572)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEECCCCc
Confidence 3456799999999999999999999995
No 356
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=21.34 E-value=1.8e+02 Score=25.88 Aligned_cols=46 Identities=17% Similarity=0.189 Sum_probs=36.1
Q ss_pred HHHHHHhhCCeEEEe-ccCcchhhHHHHHHHHHhCCCeEEEECCCCC
Q 016198 316 KAMEAAKECDAFLVL-GSSLMTMSAYRLVRAAHEAGSTIAIVNVGET 361 (393)
Q Consensus 316 ~a~~~~~~aDllLVv-GTSl~V~p~~~lv~~a~~~ga~li~IN~~~t 361 (393)
+....+++||+++|- |-..+.+-++-=.-++...|.++|++.+.+-
T Consensus 68 RT~~li~~aDvvVvrFGekYKQWNaAfDAg~aaAlgKplI~lh~~~~ 114 (144)
T TIGR03646 68 RTRKLIEKADVVIALFGEKYKQWNAAFDAGYAAALGKPLIILRPEEL 114 (144)
T ss_pred HHHHHHhhCCEEEEEechHHHHHHHHhhHHHHHHcCCCeEEecchhc
Confidence 445578999988884 9999887776666667778999999987753
No 357
>PRK14873 primosome assembly protein PriA; Provisional
Probab=21.29 E-value=47 Score=36.88 Aligned_cols=16 Identities=25% Similarity=0.530 Sum_probs=12.9
Q ss_pred ecccceeecCCCCccc
Q 016198 226 HGTVYTVVCLDCGFSF 241 (393)
Q Consensus 226 HGs~~~~~C~~C~~~~ 241 (393)
-|-...+.|..|++..
T Consensus 378 rGyap~l~C~~Cg~~~ 393 (665)
T PRK14873 378 RGYVPSLACARCRTPA 393 (665)
T ss_pred CCCCCeeEhhhCcCee
Confidence 5777788999999764
No 358
>PF01286 XPA_N: XPA protein N-terminal; InterPro: IPR022652 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. Skin cells of individual's with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-A is the most severe form of the disease and is due to defects in a 30 kDa nuclear protein called XPA (or XPAC) []. The sequence of the XPA protein is conserved from higher eukaryotes [] to yeast (gene RAD14) []. XPA is a hydrophilic protein of 247 to 296 amino-acid residues which has a C4-type zinc finger motif in its central section. This entry contains the zinc-finger containing region in the XPA protein. It is found N-terminal to PF05181 from PFAM ; PDB: 1D4U_A 1XPA_A.
Probab=21.22 E-value=77 Score=21.48 Aligned_cols=15 Identities=33% Similarity=1.108 Sum_probs=7.7
Q ss_pred cccccCCCCcCCCCC
Q 016198 291 FWEEDFHIPTCQKCN 305 (393)
Q Consensus 291 ~~~~~~~iP~Cp~CG 305 (393)
|+...|..+.|.+|.
T Consensus 17 yL~~~F~~~VCD~CR 31 (34)
T PF01286_consen 17 YLLNNFDLPVCDKCR 31 (34)
T ss_dssp SCCCCTS-S--TTT-
T ss_pred HHHHhCCcccccccc
Confidence 345567888999885
No 359
>PRK12474 hypothetical protein; Provisional
Probab=21.16 E-value=1e+02 Score=32.70 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCcC
Q 016198 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (393)
Q Consensus 107 ~~~~~l~~l~~~i~~ak~IVVlTGAGIS 134 (393)
+....+++++++|.+|++-||+.|.|+.
T Consensus 186 ~~~~~i~~~~~~L~~A~rPvil~G~g~~ 213 (518)
T PRK12474 186 VAAETVERIAALLRNGKKSALLLRGSAL 213 (518)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECCccc
Confidence 4567899999999999999999999985
No 360
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=21.15 E-value=2.5e+02 Score=21.36 Aligned_cols=54 Identities=17% Similarity=0.328 Sum_probs=31.4
Q ss_pred EEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCCcccEEEECcHHHHHHHHHHhCCC
Q 016198 327 FLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSL 388 (393)
Q Consensus 327 lLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~~d~~~vL~~L~~~~~~ 388 (393)
++|||.++.- .++.....+.|..+.+|-..+...+.. ..++.+.+.+.++..++
T Consensus 2 vvViGgG~ig---~E~A~~l~~~g~~vtli~~~~~~~~~~-----~~~~~~~~~~~l~~~gV 55 (80)
T PF00070_consen 2 VVVIGGGFIG---IELAEALAELGKEVTLIERSDRLLPGF-----DPDAAKILEEYLRKRGV 55 (80)
T ss_dssp EEEESSSHHH---HHHHHHHHHTTSEEEEEESSSSSSTTS-----SHHHHHHHHHHHHHTTE
T ss_pred EEEECcCHHH---HHHHHHHHHhCcEEEEEeccchhhhhc-----CHHHHHHHHHHHHHCCC
Confidence 5788888643 344444455688888888877655221 33455555555544444
No 361
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=20.96 E-value=1.1e+02 Score=31.75 Aligned_cols=40 Identities=15% Similarity=0.310 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCcCc-----------cCCCCCcCCCC
Q 016198 107 PSIEDINQLYQFFDNSAKLIVLTGAGIST-----------ECGIPDYRSPN 146 (393)
Q Consensus 107 ~~~~~l~~l~~~i~~ak~IVVlTGAGISa-----------sSGIPdFRs~~ 146 (393)
+....++++++.|++|++.||+.|.|... ..|+|-+-+..
T Consensus 196 ~~~~~i~~~~~~l~~AkrPvi~~G~g~~~~a~~~l~~lae~~~~PV~tt~~ 246 (432)
T TIGR00173 196 LDPESLDELWDRLNQAKRGVIVAGPLPPAEDAEALAALAEALGWPLLADPL 246 (432)
T ss_pred CChhhHHHHHHHHhhcCCcEEEEcCCCcHHHHHHHHHHHHhCCCeEEEeCC
Confidence 34567999999999999999999999863 24788775543
No 362
>PRK04023 DNA polymerase II large subunit; Validated
Probab=20.84 E-value=97 Score=36.03 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=21.0
Q ss_pred CcCCCCCCccCCh--------HHHHHHHHHHhhCC
Q 016198 299 PTCQKCNGVLKPD--------DRADKAMEAAKECD 325 (393)
Q Consensus 299 P~Cp~CGg~LrP~--------~~~~~a~~~~~~aD 325 (393)
..||+||..+.|. +.+.+|++.+...+
T Consensus 664 y~CPKCG~El~~~s~~~i~l~~~~~~A~~~lg~~~ 698 (1121)
T PRK04023 664 DECEKCGREPTPYSKRKIDLKELYDRALENLGERK 698 (1121)
T ss_pred CcCCCCCCCCCccceEEecHHHHHHHHHHHhCCcC
Confidence 4599999999998 66788888775544
No 363
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=20.51 E-value=86 Score=32.92 Aligned_cols=13 Identities=38% Similarity=0.846 Sum_probs=11.5
Q ss_pred CcCCCCCCccCCh
Q 016198 299 PTCQKCNGVLKPD 311 (393)
Q Consensus 299 P~Cp~CGg~LrP~ 311 (393)
-+|..|||.|.-+
T Consensus 154 F~C~~C~gelveD 166 (436)
T KOG2593|consen 154 FHCENCGGELVED 166 (436)
T ss_pred EEEecCCCchhcc
Confidence 5799999999877
No 364
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=20.40 E-value=1.1e+02 Score=33.11 Aligned_cols=28 Identities=14% Similarity=0.367 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCcC
Q 016198 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (393)
Q Consensus 107 ~~~~~l~~l~~~i~~ak~IVVlTGAGIS 134 (393)
+....+++++++|.+|++.||++|.|+.
T Consensus 185 ~~~~~i~~a~~~L~~A~rPvil~G~g~~ 212 (588)
T PRK07525 185 GGEQSLAEAAELLSEAKFPVILSGAGVV 212 (588)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 3457899999999999999999999985
No 365
>COG4469 CoiA Competence protein CoiA-like family, contains a predicted nuclease domain [General function prediction only]
Probab=20.35 E-value=1e+02 Score=31.39 Aligned_cols=53 Identities=19% Similarity=0.271 Sum_probs=30.7
Q ss_pred cCCCCCCccCCh----HHHHHHHHHHhhCCeEEEeccCcchhhHHHHHHH-HHhCCCeE
Q 016198 300 TCQKCNGVLKPD----DRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRA-AHEAGSTI 353 (393)
Q Consensus 300 ~Cp~CGg~LrP~----~~~~~a~~~~~~aDllLVvGTSl~V~p~~~lv~~-a~~~ga~l 353 (393)
.||.||+.+.-- .+.+-|.+..+.|++..+ +-|-.-....+.+.. ..+.|+++
T Consensus 27 fCPaC~~~l~lK~G~~k~pHFAHk~l~~C~~~~E-nES~~HL~~Kr~Lyqwlk~q~~~V 84 (342)
T COG4469 27 FCPACGSQLILKQGLIKIPHFAHKSLKACAFFNE-NESEEHLKGKRQLYQWLKRQGCKV 84 (342)
T ss_pred ccCCCCCeeeeecCccccchhhhhhhhhccccCC-CCCHHHHHhHHHHHHHHHhcCCce
Confidence 799999966544 455777778888887644 233322333333322 33445554
No 366
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=20.32 E-value=1.2e+02 Score=32.45 Aligned_cols=28 Identities=18% Similarity=0.386 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCcC
Q 016198 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (393)
Q Consensus 107 ~~~~~l~~l~~~i~~ak~IVVlTGAGIS 134 (393)
+..+.+++++++|.+|++.||+.|.|..
T Consensus 189 ~~~~~i~~~~~~L~~A~rPvi~~G~g~~ 216 (557)
T PRK08199 189 PGAADLARLAELLARAERPLVILGGSGW 216 (557)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCCcC
Confidence 4456799999999999999999999985
No 367
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=20.28 E-value=1.1e+02 Score=32.84 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHHcCCcEEEEeCCCcC
Q 016198 108 SIEDINQLYQFFDNSAKLIVLTGAGIS 134 (393)
Q Consensus 108 ~~~~l~~l~~~i~~ak~IVVlTGAGIS 134 (393)
....+++++++|.+|++.||++|.|.-
T Consensus 187 ~~~~i~~~~~~L~~AkrPvi~~G~g~~ 213 (558)
T TIGR00118 187 HPLQIKKAAELINLAKKPVILVGGGVI 213 (558)
T ss_pred CHHHHHHHHHHHHhCCCcEEEECCCcc
Confidence 456799999999999999999999985
No 368
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=20.22 E-value=1e+02 Score=33.06 Aligned_cols=28 Identities=18% Similarity=0.549 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCcC
Q 016198 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (393)
Q Consensus 107 ~~~~~l~~l~~~i~~ak~IVVlTGAGIS 134 (393)
+....+++++++|.+|++-||+.|.|+.
T Consensus 191 ~~~~~~~~~~~~L~~AkrPvi~~G~g~~ 218 (554)
T TIGR03254 191 PSPDSVDRAVELLKDAKRPLILLGKGAA 218 (554)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 4467899999999999999999999986
No 369
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=20.18 E-value=1.2e+02 Score=32.38 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHcCCcEEEEeCCCcC
Q 016198 110 EDINQLYQFFDNSAKLIVLTGAGIS 134 (393)
Q Consensus 110 ~~l~~l~~~i~~ak~IVVlTGAGIS 134 (393)
.+++.++++|++|++.||++|.|..
T Consensus 183 ~~i~~~~~~L~~AkrPvii~G~g~~ 207 (549)
T PRK06457 183 IDFSRAKELIKESEKPVLLIGGGTR 207 (549)
T ss_pred HHHHHHHHHHHcCCCcEEEECcchh
Confidence 5789999999999999999999974
No 370
>TIGR03847 conserved hypothetical protein. The conserved hypothetical protein described here occurs as part of the trio of uncharacterized proteins common in the Actinobacteria.
Probab=20.16 E-value=54 Score=30.32 Aligned_cols=14 Identities=36% Similarity=0.933 Sum_probs=12.2
Q ss_pred CCcCCCCCCccCCh
Q 016198 298 IPTCQKCNGVLKPD 311 (393)
Q Consensus 298 iP~Cp~CGg~LrP~ 311 (393)
=|.||.||-++.|.
T Consensus 156 RP~CPlCg~PldP~ 169 (177)
T TIGR03847 156 RPPCPLCGRPIDPD 169 (177)
T ss_pred CCCCCCCCCCCCCC
Confidence 37899999999885
No 371
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=20.12 E-value=1.1e+02 Score=30.79 Aligned_cols=43 Identities=28% Similarity=0.636 Sum_probs=27.7
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEeCCCcCccCCCCCcCCCC
Q 016198 98 KKAVPDADPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPN 146 (393)
Q Consensus 98 ~~~~p~~~~~~~~~l~~l~~~i~~ak~IVVlTGAGISasSGIPdFRs~~ 146 (393)
|+++|-..|...-..+.+..+++ ...|+|++|-| |||-+.+.+
T Consensus 157 rrvV~SP~P~~iv~~~~I~~Ll~-~g~IpI~~Ggg-----GiPv~~~~~ 199 (308)
T cd04235 157 RRVVPSPKPKDIVEIEAIKTLVD-NGVIVIAAGGG-----GIPVVREGG 199 (308)
T ss_pred eeeeCCCCCccccCHHHHHHHHH-CCCEEEEECCC-----ccCEEEcCC
Confidence 56677444433333444444444 68899999887 899988654
No 372
>PRK09411 carbamate kinase; Reviewed
Probab=20.09 E-value=92 Score=31.18 Aligned_cols=44 Identities=20% Similarity=0.505 Sum_probs=28.0
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEeCCCcCccCCCCCcCCCCC
Q 016198 98 KKAVPDADPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNG 147 (393)
Q Consensus 98 ~~~~p~~~~~~~~~l~~l~~~i~~ak~IVVlTGAGISasSGIPdFRs~~G 147 (393)
|+++|-..|...-..+.+..+++ +..|||.+|-| |||...+.+|
T Consensus 152 rrVVpSP~P~~iVe~~~I~~Ll~-~G~IVI~~gGG-----GIPV~~~~~G 195 (297)
T PRK09411 152 RRVVASPQPRKILDSEAIELLLK-EGHVVICSGGG-----GVPVTEDGAG 195 (297)
T ss_pred EEEccCCCCcceECHHHHHHHHH-CCCEEEecCCC-----CCCeEEcCCC
Confidence 45666444444445555555555 68899999888 7887665444
No 373
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=20.08 E-value=56 Score=25.96 Aligned_cols=15 Identities=20% Similarity=0.474 Sum_probs=11.4
Q ss_pred CcEEEEeCCCcCccC
Q 016198 123 AKLIVLTGAGISTEC 137 (393)
Q Consensus 123 k~IVVlTGAGISasS 137 (393)
++|++.+|+|++++.
T Consensus 1 ~kilvvCg~G~gtS~ 15 (87)
T cd05567 1 KKIVFACDAGMGSSA 15 (87)
T ss_pred CEEEEECCCCccHHH
Confidence 468888898888753
Done!