Query 016198
Match_columns 393
No_of_seqs 148 out of 1299
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 09:33:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016198.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016198hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yc5_A NAD-dependent deacetyla 100.0 6.8E-60 2.3E-64 450.6 21.1 231 112-389 3-246 (246)
2 1ma3_A SIR2-AF2, transcription 100.0 1E-58 3.4E-63 444.3 21.2 230 109-386 2-246 (253)
3 1m2k_A Silent information regu 100.0 1.5E-57 5E-62 435.3 18.5 224 113-386 3-240 (249)
4 3riy_A NAD-dependent deacetyla 100.0 1.7E-57 5.9E-62 440.2 19.0 243 109-384 8-273 (273)
5 3u31_A SIR2A, transcriptional 100.0 2.1E-56 7E-61 435.6 22.4 232 107-384 30-277 (290)
6 1q1a_A HST2 protein; ternary c 100.0 1.8E-55 6.1E-60 429.2 21.5 235 108-388 4-279 (289)
7 1s5p_A NAD-dependent deacetyla 100.0 9.5E-56 3.2E-60 419.4 15.3 217 122-386 1-230 (235)
8 2hjh_A NAD-dependent histone d 100.0 8.1E-55 2.8E-59 435.5 19.4 261 109-392 33-322 (354)
9 3glr_A NAD-dependent deacetyla 100.0 5.8E-55 2E-59 424.2 15.9 230 110-388 9-265 (285)
10 4iao_A NAD-dependent histone d 100.0 3.7E-54 1.3E-58 440.8 20.6 261 109-392 171-460 (492)
11 1q14_A HST2 protein; histone d 100.0 2.7E-54 9.2E-59 431.9 19.0 238 105-388 9-287 (361)
12 3k35_A NAD-dependent deacetyla 100.0 7.5E-55 2.6E-59 428.0 14.2 232 109-392 31-275 (318)
13 1j8f_A SIRT2, sirtuin 2, isofo 100.0 1.1E-53 3.6E-58 422.5 21.5 231 109-388 28-304 (323)
14 3pki_A NAD-dependent deacetyla 100.0 3.4E-54 1.2E-58 427.1 12.6 232 109-392 31-275 (355)
15 3lq1_A 2-succinyl-5-enolpyruvy 92.1 0.37 1.3E-05 50.2 8.7 67 319-387 285-353 (578)
16 2iht_A Carboxyethylarginine sy 90.9 0.48 1.6E-05 49.2 7.9 68 317-387 281-351 (573)
17 3hww_A 2-succinyl-5-enolpyruvy 90.1 0.54 1.9E-05 48.6 7.5 66 316-383 271-338 (556)
18 2x7j_A 2-succinyl-5-enolpyruvy 89.8 0.87 3E-05 47.6 8.8 66 319-387 306-373 (604)
19 3eya_A Pyruvate dehydrogenase 89.3 0.5 1.7E-05 48.8 6.5 64 317-387 259-324 (549)
20 1ozh_A ALS, acetolactate synth 89.0 0.55 1.9E-05 48.7 6.5 66 318-387 269-336 (566)
21 1ybh_A Acetolactate synthase, 88.7 0.42 1.4E-05 49.8 5.5 69 316-386 271-341 (590)
22 4feg_A Pyruvate oxidase; carba 88.1 0.69 2.4E-05 48.4 6.6 67 317-387 270-338 (603)
23 2c31_A Oxalyl-COA decarboxylas 87.9 0.42 1.4E-05 49.5 4.8 68 319-386 268-337 (568)
24 2pgn_A Cyclohexane-1,2-dione h 87.6 0.42 1.4E-05 49.9 4.5 67 317-386 265-333 (589)
25 2pan_A Glyoxylate carboligase; 87.0 0.74 2.5E-05 48.2 6.0 67 317-385 287-355 (616)
26 1v5e_A Pyruvate oxidase; oxido 86.2 1.4 4.7E-05 46.0 7.6 67 316-387 262-331 (590)
27 2q28_A Oxalyl-COA decarboxylas 84.9 0.84 2.9E-05 47.1 5.1 66 319-386 266-333 (564)
28 1o97_D Electron transferring f 82.7 2.5 8.4E-05 41.1 7.1 58 324-386 260-318 (320)
29 1t9b_A Acetolactate synthase, 82.3 1.7 5.9E-05 46.3 6.3 69 319-387 352-429 (677)
30 2lcq_A Putative toxin VAPC6; P 80.6 0.62 2.1E-05 40.6 1.8 12 231-242 132-143 (165)
31 1lko_A Rubrerythrin all-iron(I 79.7 0.64 2.2E-05 41.8 1.6 14 229-242 153-166 (191)
32 2uz1_A Benzaldehyde lyase; thi 79.3 0.69 2.4E-05 47.8 1.9 65 321-386 267-333 (563)
33 2vpz_A Thiosulfate reductase; 75.6 3.9 0.00013 43.9 6.5 53 321-373 197-252 (765)
34 1q6z_A BFD, BFDC, benzoylforma 74.6 0.79 2.7E-05 47.0 0.8 71 316-387 259-330 (528)
35 2ivf_A Ethylbenzene dehydrogen 69.3 4.3 0.00015 44.9 5.2 52 321-372 244-297 (976)
36 1h0h_A Formate dehydrogenase ( 68.9 5.8 0.0002 44.0 6.1 52 321-372 182-235 (977)
37 1efv_A Electron transfer flavo 68.0 6.8 0.00023 37.9 5.7 60 323-387 253-313 (315)
38 2kdx_A HYPA, hydrogenase/ureas 67.2 2.5 8.5E-05 34.9 2.1 20 223-242 65-84 (119)
39 1efp_A ETF, protein (electron 66.8 7.1 0.00024 37.6 5.5 59 323-386 248-307 (307)
40 2e7z_A Acetylene hydratase AHY 66.7 3.3 0.00011 44.1 3.5 52 321-372 158-212 (727)
41 3a43_A HYPD, hydrogenase nicke 66.3 2.4 8.3E-05 36.2 1.9 22 223-244 62-83 (139)
42 2iv2_X Formate dehydrogenase H 65.9 4.2 0.00014 43.2 4.1 53 321-373 164-218 (715)
43 2wvg_A PDC, pyruvate decarboxy 64.9 2.5 8.5E-05 43.7 2.0 66 318-387 271-336 (568)
44 1yuz_A Nigerythrin; rubrythrin 64.8 3 0.0001 37.8 2.3 14 229-242 169-182 (202)
45 2vbi_A Pyruvate decarboxylase; 64.8 2.6 8.8E-05 43.5 2.1 67 317-387 270-336 (566)
46 2vk8_A Pyruvate decarboxylase 64.4 2.1 7.1E-05 44.1 1.3 66 316-385 271-336 (563)
47 3trj_A Phosphoheptose isomeras 64.3 14 0.00049 32.6 6.8 54 320-373 111-168 (201)
48 3pwf_A Rubrerythrin; non heme 64.3 3.1 0.00011 36.7 2.2 13 230-242 137-149 (170)
49 1e8j_A Rubredoxin; iron-sulfur 63.8 9.7 0.00033 27.1 4.4 13 230-242 2-14 (52)
50 2nap_A Protein (periplasmic ni 63.4 7.1 0.00024 41.4 5.3 54 321-374 164-221 (723)
51 2kn9_A Rubredoxin; metalloprot 61.1 8.6 0.00029 30.0 4.0 15 229-243 25-39 (81)
52 3i9v_3 NADH-quinone oxidoreduc 60.0 11 0.00036 40.8 6.0 55 319-374 388-469 (783)
53 2v3b_B Rubredoxin 2, rubredoxi 59.8 8.2 0.00028 27.8 3.4 14 230-243 2-15 (55)
54 2vbf_A Branched-chain alpha-ke 59.3 2 6.9E-05 44.4 0.1 66 317-386 289-354 (570)
55 1s24_A Rubredoxin 2; electron 59.1 8.5 0.00029 30.4 3.7 15 229-243 33-47 (87)
56 1twf_L ABC10-alpha, DNA-direct 59.0 6.2 0.00021 29.9 2.8 11 231-241 28-38 (70)
57 3szu_A ISPH, 4-hydroxy-3-methy 57.9 20 0.00068 35.0 6.8 74 312-386 214-298 (328)
58 1dx8_A Rubredoxin; electron tr 57.8 12 0.0004 28.3 4.2 16 228-243 4-19 (70)
59 1ovm_A Indole-3-pyruvate decar 57.3 3.8 0.00013 42.0 1.8 64 317-384 270-333 (552)
60 2i2w_A Phosphoheptose isomeras 57.1 21 0.00071 31.6 6.5 57 319-375 127-184 (212)
61 1eu1_A Dimethyl sulfoxide redu 56.1 6.2 0.00021 42.4 3.2 53 320-372 174-237 (780)
62 3cf4_G Acetyl-COA decarboxylas 55.9 6.6 0.00023 34.0 2.9 25 110-134 22-46 (170)
63 3dnf_A ISPH, LYTB, 4-hydroxy-3 55.8 19 0.00064 34.6 6.2 64 312-376 198-265 (297)
64 3na7_A HP0958; flagellar bioge 54.1 6.1 0.00021 36.8 2.5 13 297-309 221-233 (256)
65 1q16_A Respiratory nitrate red 53.2 7.2 0.00025 44.6 3.3 52 321-372 244-297 (1247)
66 1kqf_A FDH-N alpha, formate de 52.5 7.2 0.00024 43.4 3.1 53 320-372 219-274 (1015)
67 3ml1_A NAPA, periplasmic nitra 52.3 14 0.00049 39.9 5.4 53 320-372 175-231 (802)
68 2xbl_A Phosphoheptose isomeras 51.4 16 0.00055 31.5 4.7 56 320-375 113-169 (198)
69 1ti6_A Pyrogallol hydroxytrans 50.8 9.1 0.00031 41.7 3.6 53 320-372 205-265 (875)
70 1tk9_A Phosphoheptose isomeras 50.7 25 0.00086 29.9 5.8 56 319-374 106-162 (188)
71 6rxn_A Rubredoxin; electron tr 50.5 11 0.00039 26.1 2.8 14 229-242 2-15 (46)
72 4ayb_P DNA-directed RNA polyme 49.8 7.4 0.00025 27.3 1.7 13 231-243 3-15 (48)
73 2yva_A DNAA initiator-associat 49.1 26 0.00087 30.2 5.6 56 319-374 105-164 (196)
74 3cf4_G Acetyl-COA decarboxylas 48.8 13 0.00044 32.1 3.6 61 320-386 104-167 (170)
75 4rxn_A Rubredoxin; electron tr 48.2 15 0.00051 26.4 3.2 14 230-243 2-15 (54)
76 1x92_A APC5045, phosphoheptose 48.2 27 0.00091 30.2 5.6 57 319-375 109-169 (199)
77 1yk4_A Rubredoxin, RD; electro 45.5 12 0.00041 26.6 2.3 13 231-243 2-14 (52)
78 1tmo_A TMAO reductase, trimeth 44.6 14 0.00046 40.0 3.7 52 321-372 208-274 (829)
79 2gmg_A Hypothetical protein PF 44.4 14 0.00047 30.2 2.8 11 231-241 67-77 (105)
80 3sho_A Transcriptional regulat 44.3 27 0.00091 29.8 4.9 57 317-373 81-138 (187)
81 2f62_A Nucleoside 2-deoxyribos 43.4 1.3E+02 0.0044 25.9 9.2 75 312-387 56-159 (161)
82 1e2b_A Enzyme IIB-cellobiose; 41.4 8.1 0.00028 31.1 1.0 14 123-136 4-17 (106)
83 1m3s_A Hypothetical protein YC 41.2 28 0.00097 29.6 4.6 51 321-371 77-128 (186)
84 1jeo_A MJ1247, hypothetical pr 41.0 35 0.0012 28.9 5.1 52 321-373 80-132 (180)
85 3etn_A Putative phosphosugar i 39.3 24 0.00081 31.6 3.9 53 321-373 104-159 (220)
86 2xhz_A KDSD, YRBH, arabinose 5 39.1 29 0.00098 29.5 4.3 53 321-373 94-147 (183)
87 1vim_A Hypothetical protein AF 36.9 30 0.001 30.2 4.2 53 321-373 87-140 (200)
88 2nxw_A Phenyl-3-pyruvate decar 36.3 11 0.00038 38.8 1.3 66 317-386 283-348 (565)
89 2f9i_B Acetyl-coenzyme A carbo 35.9 1.2E+02 0.0042 28.5 8.5 23 337-359 143-165 (285)
90 3h0g_L DNA-directed RNA polyme 35.5 25 0.00085 26.0 2.7 11 297-307 37-47 (63)
91 3cvj_A Putative phosphoheptose 35.3 32 0.0011 30.9 4.2 52 321-372 106-169 (243)
92 2jrp_A Putative cytoplasmic pr 33.7 15 0.0005 28.7 1.3 12 231-242 18-29 (81)
93 2h1q_A Hypothetical protein; Z 32.7 40 0.0014 31.8 4.4 68 319-387 182-256 (270)
94 1djl_A Transhydrogenase DIII; 32.3 36 0.0012 30.8 3.8 73 314-387 111-202 (207)
95 3jx9_A Putative phosphoheptose 31.5 38 0.0013 29.6 3.8 51 320-370 74-127 (170)
96 2gnr_A Conserved hypothetical 31.1 18 0.00061 31.0 1.5 15 227-241 43-57 (145)
97 1pno_A NAD(P) transhydrogenase 29.9 32 0.0011 30.4 3.0 72 314-386 89-179 (180)
98 3l5o_A Uncharacterized protein 29.9 37 0.0013 32.0 3.7 70 317-387 180-256 (270)
99 2fsv_C NAD(P) transhydrogenase 29.2 31 0.001 31.2 2.8 72 314-386 112-202 (203)
100 4hpq_A ATG31, KLTH0C07942P; au 29.1 23 0.00079 26.5 1.6 15 10-24 1-15 (69)
101 1ytl_A Acetyl-COA decarboxylas 28.9 30 0.001 30.3 2.7 34 322-357 107-142 (174)
102 2khz_A C-MYC-responsive protei 28.7 2.2E+02 0.0075 24.2 8.3 48 312-360 66-113 (165)
103 2xig_A Ferric uptake regulatio 28.2 41 0.0014 28.3 3.4 52 184-243 58-111 (150)
104 3fxa_A SIS domain protein; str 27.8 37 0.0013 29.4 3.1 52 321-372 90-142 (201)
105 3irb_A Uncharacterized protein 27.6 22 0.00074 30.3 1.4 11 231-241 47-57 (145)
106 1y0p_A Fumarate reductase flav 27.5 94 0.0032 31.5 6.6 35 323-361 126-160 (571)
107 1tvm_A PTS system, galactitol- 27.4 17 0.00057 29.4 0.7 16 122-137 21-36 (113)
108 3mwm_A ZUR, putative metal upt 27.2 52 0.0018 27.3 3.8 55 184-243 45-99 (139)
109 3fj1_A Putative phosphosugar i 26.5 42 0.0014 32.3 3.5 53 322-374 90-143 (344)
110 3ff4_A Uncharacterized protein 26.3 1.2E+02 0.0041 24.7 5.8 59 324-383 4-75 (122)
111 3sho_A Transcriptional regulat 25.2 1.6E+02 0.0054 24.7 6.7 47 312-358 27-73 (187)
112 3hba_A Putative phosphosugar i 25.0 91 0.0031 29.8 5.6 53 322-374 89-142 (334)
113 2aml_A SIS domain protein; 469 24.7 73 0.0025 30.8 4.9 54 321-374 95-150 (373)
114 1jeo_A MJ1247, hypothetical pr 23.9 1.7E+02 0.0059 24.3 6.7 46 312-357 28-73 (180)
115 1nri_A Hypothetical protein HI 23.8 62 0.0021 30.5 4.1 53 321-373 138-191 (306)
116 1moq_A Glucosamine 6-phosphate 23.6 41 0.0014 32.4 2.8 54 321-374 97-152 (368)
117 2jne_A Hypothetical protein YF 23.6 26 0.00088 28.3 1.1 12 298-309 61-72 (101)
118 2a3n_A Putative glucosamine-fr 22.9 78 0.0027 30.3 4.7 54 321-374 100-154 (355)
119 2kr4_A Ubiquitin conjugation f 22.8 1.2E+02 0.0043 22.7 4.9 18 233-250 28-45 (85)
120 2l2q_A PTS system, cellobiose- 22.7 32 0.0011 27.4 1.6 13 124-136 6-18 (109)
121 3knz_A Putative sugar binding 22.7 69 0.0024 31.1 4.2 53 321-373 95-148 (366)
122 1vim_A Hypothetical protein AF 22.6 1.9E+02 0.0064 24.9 6.8 47 312-358 35-81 (200)
123 3eya_A Pyruvate dehydrogenase 22.5 59 0.002 33.1 3.8 28 107-134 186-213 (549)
124 4fyk_A Deoxyribonucleoside 5'- 22.5 1.9E+02 0.0066 24.7 6.6 46 312-358 57-102 (152)
125 3nbm_A PTS system, lactose-spe 22.3 24 0.00081 28.6 0.7 14 123-136 7-20 (108)
126 2ywx_A Phosphoribosylaminoimid 22.2 29 0.00099 30.3 1.2 26 111-136 39-64 (157)
127 1mzb_A Ferric uptake regulatio 21.3 61 0.0021 26.6 3.1 52 184-243 50-103 (136)
128 1gh9_A 8.3 kDa protein (gene M 21.2 29 0.00098 26.3 0.9 12 299-311 22-33 (71)
129 3eua_A Putative fructose-amino 21.1 45 0.0015 31.8 2.5 52 322-373 73-125 (329)
130 2fiy_A Protein FDHE homolog; F 20.7 62 0.0021 31.1 3.3 16 227-242 204-219 (309)
131 1vkr_A Mannitol-specific PTS s 20.7 22 0.00074 29.5 0.1 17 121-137 12-28 (125)
132 2kre_A Ubiquitin conjugation f 20.6 1.1E+02 0.0039 23.8 4.4 13 299-311 64-76 (100)
133 1m3s_A Hypothetical protein YC 20.5 2.3E+02 0.0077 23.7 6.7 46 312-357 25-70 (186)
134 1j5x_A Glucosamine-6-phosphate 20.2 64 0.0022 30.8 3.4 52 322-373 98-151 (342)
No 1
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=100.00 E-value=6.8e-60 Score=450.60 Aligned_cols=231 Identities=35% Similarity=0.625 Sum_probs=197.9
Q ss_pred HHHHHHHHHcCCcEEEEeCCCcCccCCCCCcCCCCCCCcCCC--CCCChHHHhhchhHHHHHHHHHhhhhhcccCCCCCH
Q 016198 112 INQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGF--KPITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNP 189 (393)
Q Consensus 112 l~~l~~~i~~ak~IVVlTGAGISasSGIPdFRs~~Gl~~~~~--~p~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~ 189 (393)
+++|+++|++|++|||+|||||||+||||||||++|+|+. + ..++++.|.++|..+|.||.+.+. .+.+++||+
T Consensus 3 i~~l~~~l~~a~~ivv~tGAGiS~~SGIpdfR~~~Glw~~-~~~~~~~~~~f~~~p~~~~~~~~~~~~---~~~~~~Pn~ 78 (246)
T 1yc5_A 3 MKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKK-YSQNVFDIDFFYSHPEEFYRFAKEGIF---PMLQAKPNL 78 (246)
T ss_dssp CHHHHHHHHHCSSEEEEECGGGTGGGTCCCC------------CCTTBHHHHHHCHHHHHHHHHHHTG---GGGGCCCCH
T ss_pred HHHHHHHHHhCCCEEEEECceeehhhCCCCccCCCccccc-CCCceecHHHHhhCHHHHHHHHHHHHH---HhccCCCCH
Confidence 5789999999999999999999999999999999999984 5 347888999999988888875432 356899999
Q ss_pred HHHHHHHHHhcCCccEEEEccCcchhhhcCCCc-eeeecccceeecCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCC
Q 016198 190 AHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGS 268 (393)
Q Consensus 190 ~H~~La~L~~~g~l~~ViTQNIDgLh~rAG~~~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~~~ 268 (393)
+|++|++|+++|++++||||||||||++||+++ +|+||++..++|..|++.|+.+.+.+.+
T Consensus 79 ~H~~La~L~~~g~~~~viTQNvD~Lh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~------------------ 140 (246)
T 1yc5_A 79 AHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRCEKKYTVEDVIKKL------------------ 140 (246)
T ss_dssp HHHHHHHHHHTTSCSEEEECCCSCHHHHTTCSCEEETTEEEEEEEETTTCCEEEHHHHHHHT------------------
T ss_pred HHHHHHHHHhcCCCceEEeccccchHhHcCCCcEEEecCccceeEcCCCCCCCcHHHHHHHh------------------
Confidence 999999999999999999999999999999988 9999999999999999988765432111
Q ss_pred CCCCCCcCcccCCCCCcccccccccccCCCCcCCCCCCccCCh----------HHHHHHHHHHhhCCeEEEeccCcchhh
Q 016198 269 PGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPD----------DRADKAMEAAKECDAFLVLGSSLMTMS 338 (393)
Q Consensus 269 p~~~~~~g~~~~~d~d~~i~~~~~~~~~~iP~Cp~CGg~LrP~----------~~~~~a~~~~~~aDllLVvGTSl~V~p 338 (393)
+ ...+|+||.|||.|||+ +.++++.+++++||++|||||||+|+|
T Consensus 141 -------------------~------~~~~p~C~~Cgg~lrP~vv~FgE~lp~~~~~~a~~~~~~adl~lviGTSl~V~P 195 (246)
T 1yc5_A 141 -------------------E------SSDVPLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYP 195 (246)
T ss_dssp -------------------T------TCSSCBCTTTCCBEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCSCEET
T ss_pred -------------------c------cCCCCCCCCCCCccCcceEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCcchh
Confidence 0 11579999999999999 468999999999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEECCCCCCCCCcccEEEECcHHHHHHHHHHhCCCC
Q 016198 339 AYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSLS 389 (393)
Q Consensus 339 ~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~~d~~~vL~~L~~~~~~~ 389 (393)
+++|+..+++.|+++|+||+++++.++.++++|.++++++|++|++.|+|+
T Consensus 196 ~~~l~~~a~~~g~~~i~IN~~~~~~d~~~~~~i~~~~~~~l~~l~~~lg~~ 246 (246)
T 1yc5_A 196 AAELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRVMEEGGIS 246 (246)
T ss_dssp GGGHHHHHHHHTCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCCCCcceeEEEeCCHHHHHHHHHHHcCCC
Confidence 999999988889999999999999999999999999999999999999875
No 2
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=100.00 E-value=1e-58 Score=444.25 Aligned_cols=230 Identities=39% Similarity=0.675 Sum_probs=195.7
Q ss_pred HHHHHHHHHHHHcCCcEEEEeCCCcCccCCCCCcCCCCCCCcCCCCC---CChHHHhhchhHHHHHHHHHhhhhhcccCC
Q 016198 109 IEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAA 185 (393)
Q Consensus 109 ~~~l~~l~~~i~~ak~IVVlTGAGISasSGIPdFRs~~Gl~~~~~~p---~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a 185 (393)
++++++|+++|++|++|||+|||||||+||||||||++|+|+. +.+ ++++.|..+|..+|.||.+.+. .+. +
T Consensus 2 ~~~i~~l~~~l~~a~~ivv~tGAGiS~~SGIPdfR~~~Glw~~-~~~~~~~~~~~f~~~p~~~~~f~~~~~~---~~~-~ 76 (253)
T 1ma3_A 2 EDEIRKAAEILAKSKHAVVFTGAGISAESGIPTFRGEDGLWRK-YDPEEVASISGFKRNPRAFWEFSMEMKD---KLF-A 76 (253)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECGGGSCC----------CCSCS-SCHHHHTBHHHHTTCHHHHHHHHHHTHH---HHT-C
T ss_pred hHHHHHHHHHHHhCCcEEEEEchhhhHhhCCCCcCCCCccccc-CChhheecHHHHhcCHHHHHHHHHHHHH---hcc-C
Confidence 3578999999999999999999999999999999999999984 665 6888899999988888875433 344 9
Q ss_pred CCCHHHHHHHHHHhcCCccEEEEccCcchhhhcCCCc-eeeecccceeecCCCCcccchhhHHHHHHhhChhHHHHHhhh
Q 016198 186 QPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESL 264 (393)
Q Consensus 186 ~Pn~~H~~La~L~~~g~l~~ViTQNIDgLh~rAG~~~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l 264 (393)
+||++|++|++|+++|++++||||||||||++||+++ +|+||++..++|..|++.|+.+.+.+.+.
T Consensus 77 ~Pn~~H~~La~L~~~g~~~~viTQNvD~Lh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~------------- 143 (253)
T 1ma3_A 77 EPNPAHYAIAELERMGIVKAVITQNIDMLHQRAGSRRVLELHGSMDKLDCLDCHETYDWSEFVEDFN------------- 143 (253)
T ss_dssp CCCHHHHHHHHHHHTTSEEEEEESCCSCHHHHHTCCSEEETTEEEEEEEETTTCCEEEGGGTHHHHH-------------
T ss_pred CCCHHHHHHHHHHhcCCCeEEEeccccccHhHhCCCCEEEeCCCcCeeeeCCCCCcCcHHHHHHHhc-------------
Confidence 9999999999999999999999999999999999998 99999999999999999887654432110
Q ss_pred cCCCCCCCCCcCcccCCCCCcccccccccccCCCCcCCCCCC-ccCCh----------HHHHHHHHHHhhCCeEEEeccC
Q 016198 265 DYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNG-VLKPD----------DRADKAMEAAKECDAFLVLGSS 333 (393)
Q Consensus 265 ~~~~p~~~~~~g~~~~~d~d~~i~~~~~~~~~~iP~Cp~CGg-~LrP~----------~~~~~a~~~~~~aDllLVvGTS 333 (393)
...+|+||+||| .|||+ +.++++.+++++||++||||||
T Consensus 144 ------------------------------~~~~p~C~~Cgg~~lrP~Vv~FgE~lp~~~~~~a~~~~~~adl~lviGTS 193 (253)
T 1ma3_A 144 ------------------------------KGEIPRCRKCGSYYVKPRVVLFGEPLPQRTLFEAIEEAKHCDAFMVVGSS 193 (253)
T ss_dssp ------------------------------TTCCCCCTTTCCSCEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCC
T ss_pred ------------------------------cCCCCCCCCCCCccccceEEEeCCCCCHHHHHHHHHHHHhCCEEEEECCC
Confidence 114799999999 99999 4689999999999999999999
Q ss_pred cchhhHHHHHHHHHhCCCeEEEECCCCCCCCCcccEEEECcHHHHHHHHHHhC
Q 016198 334 LMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 334 l~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~~d~~~vL~~L~~~~ 386 (393)
|+|+|+++|+..+++.|+++|+||+++++.++.++++|.++++++|++|++.+
T Consensus 194 l~V~P~~~l~~~a~~~g~~~i~iN~~~~~~d~~~~~~i~~~~~~~l~~l~~~l 246 (253)
T 1ma3_A 194 LVVYPAAELPYIAKKAGAKMIIVNAEPTMADPIFDVKIIGKAGEVLPKIVEEV 246 (253)
T ss_dssp SCEETGGGHHHHHHHHTCEEEEEESSCCTTGGGCSEEEESCHHHHHHHHHHHH
T ss_pred ceeccHHHHHHHHHHcCCeEEEEeCCCCCCCCceeEEEeCCHHHHHHHHHHHH
Confidence 99999999999988889999999999999999999999999999999998754
No 3
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=100.00 E-value=1.5e-57 Score=435.27 Aligned_cols=224 Identities=33% Similarity=0.596 Sum_probs=198.9
Q ss_pred HHHHHHHHcCCcEEEEeCCCcCccCCCCCcCCCCCCCcCCCCC---CChHHHhhchhHHHHHHHHHhhhhhcccCCCCCH
Q 016198 113 NQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNP 189 (393)
Q Consensus 113 ~~l~~~i~~ak~IVVlTGAGISasSGIPdFRs~~Gl~~~~~~p---~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~ 189 (393)
++++++|++|++|||+|||||||+||||||||++|+|+. +.+ ++++.|.++|..+|.||.+.+ ..+..++||+
T Consensus 3 ~~l~~~i~~a~~ivvltGAGiS~~SGIPdfR~~~Glw~~-~~~~~~~~~~~f~~~p~~~w~~~~~~~---~~~~~~~Pn~ 78 (249)
T 1m2k_A 3 EKLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNR-YRPEELANPQAFAKDPEKVWKWYAWRM---EKVFNAQPNK 78 (249)
T ss_dssp HHHHHHHHTCSSEEEEECGGGGGGGTCCCSSSTTCHHHH-SCHHHHSSHHHHHHCHHHHHHHHHHHH---HHHHHCCCCH
T ss_pred HHHHHHHHhCCCEEEEECchhhhhhCCCCccCCCcCccC-CCHHhcccHHHHhcCHHHHHHHHHHHH---HHhCcCCCCH
Confidence 678999999999999999999999999999999999984 655 688889999887766665332 2345899999
Q ss_pred HHHHHHHHHhcCCccEEEEccCcchhhhcCCCc-eeeecccceeecCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCC
Q 016198 190 AHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGS 268 (393)
Q Consensus 190 ~H~~La~L~~~g~l~~ViTQNIDgLh~rAG~~~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~~~ 268 (393)
+|++|++|+++|++++||||||||||++||+++ +|+||++..++|..|++.|+.+..
T Consensus 79 ~H~~La~L~~~g~~~~viTQNiDgLh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~~---------------------- 136 (249)
T 1m2k_A 79 AHQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLRVVRCTSCNNSFEVESA---------------------- 136 (249)
T ss_dssp HHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCSEEETTEEEEEEEESSSSCEEECSSC----------------------
T ss_pred HHHHHHHHHhCCCCcEEEECCccchhhhcCCCcEEEecCCcceeEeCCCCCcccchhh----------------------
Confidence 999999999999999999999999999999988 999999999999999987653210
Q ss_pred CCCCCCcCcccCCCCCcccccccccccCCCCcCCCCCCccCCh----------HHHHHHHHHHhhCCeEEEeccCcchhh
Q 016198 269 PGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPD----------DRADKAMEAAKECDAFLVLGSSLMTMS 338 (393)
Q Consensus 269 p~~~~~~g~~~~~d~d~~i~~~~~~~~~~iP~Cp~CGg~LrP~----------~~~~~a~~~~~~aDllLVvGTSl~V~p 338 (393)
+++ ..+|+||+|||.|||+ +.++++.+++++||++|||||||+|+|
T Consensus 137 ------------------~~~------~~~p~C~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~adlllviGTSl~V~P 192 (249)
T 1m2k_A 137 ------------------PKI------PPLPKCDKCGSLLRPGVVWAGEMLPPDVLDRAMREVERADVIIVAGTSAVVQP 192 (249)
T ss_dssp ------------------CCS------SSCCBCSSSSSBEEEEECCTTSCCCHHHHHHHHHHHHHCSEEEEESCCSCSTT
T ss_pred ------------------ccC------CCCCCCCCCCCCcCCeEEecCCCCCHHHHHHHHHHHhcCCEEEEEccCCCccc
Confidence 111 1479999999999999 468899999999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEECCCCCCCCCcccEEEECcHHHHHHHHHHhC
Q 016198 339 AYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 339 ~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~~d~~~vL~~L~~~~ 386 (393)
+++|+..+++.|+++|+||++++..++.++++|.++++++|++|++.+
T Consensus 193 ~~~l~~~a~~~g~~~i~IN~~~~~~d~~~~~~i~~~~~~~l~~l~~~l 240 (249)
T 1m2k_A 193 AASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHV 240 (249)
T ss_dssp GGGHHHHHHHTTCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCeEEEEeCCCCCCCcceeEEEeCCHHHHHHHHHHHH
Confidence 999999998889999999999999999999999999999999998764
No 4
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*
Probab=100.00 E-value=1.7e-57 Score=440.23 Aligned_cols=243 Identities=26% Similarity=0.501 Sum_probs=200.0
Q ss_pred HHHHHHHHHHHHcCCcEEEEeCCCcCccCCCCCcCCCCCCCcCCCCC---CChHHHhhchhHHHHHHHHHhhhhhcccCC
Q 016198 109 IEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAA 185 (393)
Q Consensus 109 ~~~l~~l~~~i~~ak~IVVlTGAGISasSGIPdFRs~~Gl~~~~~~p---~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a 185 (393)
++++++|+++|++|++|||+|||||||+||||||||++|+|+. +++ .+++.|.++|..+|.||.+ .+..+.++
T Consensus 8 ~~~i~~l~~~l~~a~~ivvlTGAGiSt~SGIPdFR~~~Glw~~-~~~~~l~~~~~f~~~p~~~w~fy~~---~~~~~~~~ 83 (273)
T 3riy_A 8 SSSMADFRKFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRK-WQAQDLATPLAFAHNPSRVWEFYHY---RREVMGSK 83 (273)
T ss_dssp BCCHHHHHHHHHHCSEEEEEECGGGTGGGTCCCSSSGGGEETT-EEHHHHSSHHHHHHCHHHHHHHHHH---HHHHHTTC
T ss_pred HHHHHHHHHHHHhCCcEEEEECcccchhhCCCccccccchhhh-CChhhcCCHHHHhhCHHHHHHHHHH---HHHHhhhC
Confidence 3568999999999999999999999999999999999999974 543 4778888888765555532 11235689
Q ss_pred CCCHHHHHHHHHHh----cCCccEEEEccCcchhhhcCCCc-eeeecccceeecCCCCcccchhhHHHHHHhhChhHHHH
Q 016198 186 QPNPAHFALASLEK----AGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEA 260 (393)
Q Consensus 186 ~Pn~~H~~La~L~~----~g~l~~ViTQNIDgLh~rAG~~~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~ 260 (393)
+||++|++|++|++ +|++++||||||||||++||+++ +|+||+++.++|.+|++.++... +|.+..
T Consensus 84 ~Pn~~H~~La~Le~~~~~~g~~~~viTQNiDgLh~~AG~~~vielHG~~~~~~C~~C~~~~~~~~--------~p~~~~- 154 (273)
T 3riy_A 84 EPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCGVVAENYK--------SPICPA- 154 (273)
T ss_dssp CCCHHHHHHHHHHHHHHTTTCEEEEEESCCSCHHHHHTCCSEEETTEEEEEEEETTTCCEEECCC--------SSSSGG-
T ss_pred CCCHHHHHHHHHHHhhhhcCceeEEEEecccchHhhcCCCCEEEecCcCCeeEcCCCCCcccccc--------cchhhh-
Confidence 99999999999995 58999999999999999999988 99999999999999998875321 111100
Q ss_pred HhhhcCCCCCCCCCcCcccCCCCCc---ccccccccccCCCCcC--CCCCCccCCh----------HHHHHHHHHHhhCC
Q 016198 261 IESLDYGSPGSDRSFGMKQRPDGDI---EIDEKFWEEDFHIPTC--QKCNGVLKPD----------DRADKAMEAAKECD 325 (393)
Q Consensus 261 ~~~l~~~~p~~~~~~g~~~~~d~d~---~i~~~~~~~~~~iP~C--p~CGg~LrP~----------~~~~~a~~~~~~aD 325 (393)
+.. +..++++. .++ ...+|+| |.|||.|||+ +.++++.+++++||
T Consensus 155 ---~~~-----------~~~~~~~~~~~~~~------~~~~P~C~~~~Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aD 214 (273)
T 3riy_A 155 ---LSG-----------KGAPEPGTQDASIP------VEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCD 214 (273)
T ss_dssp ---GTT-----------CCCCSTTCCCCCCC------GGGSCBCCGGGCCCBEEEEECCTTSBCCHHHHHHHHHHHHHCS
T ss_pred ---hhc-----------ccCCcccccccccc------cCCCCCCCCCCCCCeeCCcEEEeCCcCCHHHHHHHHHHHhcCC
Confidence 000 01122221 122 2268999 7899999999 56889999999999
Q ss_pred eEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCCcccEEEECcHHHHHHHHHH
Q 016198 326 AFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLD 384 (393)
Q Consensus 326 llLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~~d~~~vL~~L~~ 384 (393)
++|||||||+|+|+++|+..+.++|+++++||+++|+.|+.++++|+++++++||+|+.
T Consensus 215 l~lviGTSl~V~Paa~l~~~a~~~g~~~v~IN~~~t~~d~~~~~~i~g~~~~~l~~l~~ 273 (273)
T 3riy_A 215 LCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATNRFRFHFQGPCGTTLPEALA 273 (273)
T ss_dssp EEEEESCCSCEETGGGHHHHHHHTTCCEEEEESSCCTTGGGSSEEEESCHHHHHHHHHC
T ss_pred EEEEEeeCCcchhHHHhHHHHHHCCCEEEEECCCCCCCCcceeEEEeCCHHHHHHHHhC
Confidence 99999999999999999998888899999999999999999999999999999999873
No 5
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=100.00 E-value=2.1e-56 Score=435.61 Aligned_cols=232 Identities=26% Similarity=0.440 Sum_probs=196.1
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCcCccCCCCCcCC-CCCCCcCCCCC---CChHHHhhchhHHHHHHHHHhhhhhcc
Q 016198 107 PSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRS-PNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRF 182 (393)
Q Consensus 107 ~~~~~l~~l~~~i~~ak~IVVlTGAGISasSGIPdFRs-~~Gl~~~~~~p---~~~~~f~~~~~~~~~~w~~~~~~~~~~ 182 (393)
+.+.++++|+++|++|++|||+|||||||+|||||||+ .+|+|+. ++| .++..|..+|+.+|.||.+.+ ..
T Consensus 30 ~~~~~i~~l~~~i~~a~~ivvlTGAGiSt~SGIPdFR~~~~Glw~~-~~p~~~~~~~~f~~~p~~~w~~~~~~~----~~ 104 (290)
T 3u31_A 30 TQSITLEELAKIIKKCKHVVALTGSGTSAESNIPSFRGSSNSIWSK-YDPRIYGTIWGFWKYPEKIWEVIRDIS----SD 104 (290)
T ss_dssp CEEECHHHHHHHHHTCSSEEEEECGGGTGGGTCCSCTTCTTSGGGG-SCHHHHTBHHHHHHCHHHHHHHHHHHH----HH
T ss_pred hhHHHHHHHHHHHHhCCCEEEEeCCccccccCCccccccccchhhc-CCHHHhhCHHhhhhCHHHHHHHHHHHh----hh
Confidence 45678999999999999999999999999999999999 7899974 665 366677778876666554322 23
Q ss_pred cCCCCCHHHHHHHHHHhcCCccEEEEccCcchhhhcCCCc-eeeecccceeecCCCCcccchhhHHHHHHhhChhHHHHH
Q 016198 183 MAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAI 261 (393)
Q Consensus 183 ~~a~Pn~~H~~La~L~~~g~l~~ViTQNIDgLh~rAG~~~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~ 261 (393)
.+++||++|++|++|++.|++++||||||||||++||+++ +|+||+++.++|.+|++.|+.+....
T Consensus 105 ~~a~Pn~~H~aLa~Le~~g~~~~viTQNVDgLh~rAG~~~vielHGs~~~~~C~~C~~~~~~~~~~~------------- 171 (290)
T 3u31_A 105 YEIEINNGHVALSTLESLGYLKSVVTQNVDGLHEASGNTKVISLHGNVFEAVCCTCNKIVKLNKIML------------- 171 (290)
T ss_dssp SCCCCCHHHHHHHHHHHTTCEEEEEESCCSCHHHHTTCSCEEETTEEEEEEEETTTCCEEECCTGGG-------------
T ss_pred ccCCCCHHHHHHHHHHHcCCCceEEEechHHHHHHcCCCcEEEecCCcCcceeCCCCCcCChhHhhh-------------
Confidence 6899999999999999999999999999999999999988 99999999999999998876432210
Q ss_pred hhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCcCCCCCCccCCh----------HHHHHHHHHHhhCCeEEEec
Q 016198 262 ESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPD----------DRADKAMEAAKECDAFLVLG 331 (393)
Q Consensus 262 ~~l~~~~p~~~~~~g~~~~~d~d~~i~~~~~~~~~~iP~Cp~CGg~LrP~----------~~~~~a~~~~~~aDllLVvG 331 (393)
.+ ... .....+|+|| |||.|||+ +.++++.+++++||++||||
T Consensus 172 -------------------~~-~~~------~~~~~~P~C~-Cgg~lrPdVV~FGE~lp~~~~~~a~~~~~~aDllLviG 224 (290)
T 3u31_A 172 -------------------QK-TSH------FMHQLPPECP-CGGIFKPNIILFGEVVSSDLLKEAEEEIAKCDLLLVIG 224 (290)
T ss_dssp -------------------ST-TSS------TTTSSSCBCT-TSCBEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEES
T ss_pred -------------------cc-ccc------ccccCCCCCC-CCCEECCeEEEcCCCCCHHHHHHHHHHHhcCCEEEEEC
Confidence 00 000 0112579999 99999999 46889999999999999999
Q ss_pred cCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC-cccEEEECcHHHHHHHHHH
Q 016198 332 SSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD-LTTLKISARLGEILPRVLD 384 (393)
Q Consensus 332 TSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~-~~~l~I~~d~~~vL~~L~~ 384 (393)
|||+|+|+++|+..+++.|+++|+||+++|+.++ .+++.|+++|+++++ +++
T Consensus 225 TSl~V~Paa~l~~~a~~~g~~~v~IN~~~t~~~~~~~d~~i~g~a~~vl~-~~~ 277 (290)
T 3u31_A 225 TSSTVSTATNLCHFACKKKKKIVEINISKTYITNKMSDYHVCAKFSELTK-VAN 277 (290)
T ss_dssp CCSCSHHHHHHHHHHHHTTCCEEEEESSCCTTTTTTCSEEEESCGGGHHH-HHH
T ss_pred cCCcchhHHHHHHHHHHcCCEEEEECCCCCCCCCccceEEEECCHHHHHH-HHH
Confidence 9999999999999998899999999999999985 689999999999886 444
No 6
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=100.00 E-value=1.8e-55 Score=429.22 Aligned_cols=235 Identities=23% Similarity=0.370 Sum_probs=192.8
Q ss_pred CHHHHHHHHHHHHc--CCcEEEEeCCCcCccCCCCCcCCCC-CCCcCC--CC---C---CChHHHhhchhHHHHHHHHHh
Q 016198 108 SIEDINQLYQFFDN--SAKLIVLTGAGISTECGIPDYRSPN-GAYSSG--FK---P---ITHQQFVRSSRARRRYWARSY 176 (393)
Q Consensus 108 ~~~~l~~l~~~i~~--ak~IVVlTGAGISasSGIPdFRs~~-Gl~~~~--~~---p---~~~~~f~~~~~~~~~~w~~~~ 176 (393)
.+.++++|+++|++ |++|||+|||||||+||||||||++ |+|+.. +. | ++.+.|.++|..+|.||.+.+
T Consensus 4 ~~~~i~~l~~~i~~~~a~~ivvltGAGiSt~SGIPdfR~~~~Glw~~~~~~~l~~~e~~~~~~~f~~~p~~f~~~~~~~~ 83 (289)
T 1q1a_A 4 TEMSVRKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKELY 83 (289)
T ss_dssp THHHHHHHHHHHHHSTTSCEEEEECGGGGGGGTCCCSSSTTTSGGGSCGGGCCSSGGGGGBHHHHHHCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEECCceeHhhCCCCcCCCCCcccccccccCCCCHHHhcCHHHHhcCHHHHHHHHHHHh
Confidence 35789999999999 9999999999999999999999995 999752 11 1 355668888887666664322
Q ss_pred hhhhcccCCCCCHHHHHHHHHHhcCCccEEEEccCcchhhhcCCC--c-eeeecccceeecCCCCcccchhhHHHHHHhh
Q 016198 177 AGWRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSN--P-LELHGTVYTVVCLDCGFSFCRDLFQDQVKAL 253 (393)
Q Consensus 177 ~~~~~~~~a~Pn~~H~~La~L~~~g~l~~ViTQNIDgLh~rAG~~--~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~ 253 (393)
..+++||.+|++|++|++.|++++||||||||||++||++ + +|+||++..++|.+|++.|+.+.+...+..
T Consensus 84 -----~~~a~Pn~~H~~La~L~~~g~~~~viTQNVDgLh~~AG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~- 157 (289)
T 1q1a_A 84 -----PGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPPQVFKSKLAE- 157 (289)
T ss_dssp -----SSSCCCCHHHHHHHHHHHTTCEEEEEECCSSCHHHHTTCCGGGEEETTEEEEEEEETTTCCEECHHHHHHHHTC-
T ss_pred -----hCcCCCCHHHHHHHHHHhCCCccEEEecCccchHHHcCCCcccEEEecCCcCceEECCCCCCCcHHHHHHHHhh-
Confidence 3489999999999999999999999999999999999996 3 999999999999999998887655433310
Q ss_pred ChhHHHHHhhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCcCCCCCCccCCh---------H-H---HHHHH--
Q 016198 254 NPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPD---------D-R---ADKAM-- 318 (393)
Q Consensus 254 np~~~~~~~~l~~~~p~~~~~~g~~~~~d~d~~i~~~~~~~~~~iP~Cp~CGg~LrP~---------~-~---~~~a~-- 318 (393)
.....+|+||+|||.|||+ + . ++++.
T Consensus 158 ---------------------------------------~~~~~~P~C~~Cgg~lrP~vv~FGE~lp~~~~~~~~~~~~~ 198 (289)
T 1q1a_A 158 ---------------------------------------HPIKDFVKCDVCGELVKPAIVFFGEDLPDSFSETWLNDSEW 198 (289)
T ss_dssp ---------------------------------------SSCCSCCBCTTTCCBEEEEECCBTSBCCHHHHHHHHHHHHH
T ss_pred ---------------------------------------ccCCCCccCCCCCCEECCCEEEcCCCCCHHHHHHHHHhhhh
Confidence 0112579999999999999 2 2 22322
Q ss_pred --------HHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCC-C---CCcccEEEECcHHHHHHHHHHhC
Q 016198 319 --------EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETR-A---DDLTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 319 --------~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~-~---d~~~~l~I~~d~~~vL~~L~~~~ 386 (393)
+.+++||++||||||++|+|+++|+..++ .|+++|+||++++. + +..++++|.++|+++|++|++.+
T Consensus 199 l~~~~~a~~~~~~~DlllviGTSl~V~Pa~~l~~~~~-~~~~~v~IN~~~~~~~~~~~~~~d~~i~~~~~~~l~~l~~~l 277 (289)
T 1q1a_A 199 LREKITTSGKHPQQPLVIVVGTSLAVYPFASLPEEIP-RKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEEL 277 (289)
T ss_dssp HHHHHHC----CCCCEEEEESCCCCEETTTHHHHHSC-TTSEEEEESSSCCTHHHHSCCTTCEEECCCHHHHHHHHHHHH
T ss_pred hhhhhhHHHHhccCCEEEEEccCCChhhHHHHHHHHh-cCCCEEEEECCCcccCCCCCcceeEEEeCCHHHHHHHHHHHc
Confidence 34679999999999999999999998876 58999999999986 2 44689999999999999999987
Q ss_pred CC
Q 016198 387 SL 388 (393)
Q Consensus 387 ~~ 388 (393)
+.
T Consensus 278 ~~ 279 (289)
T 1q1a_A 278 GW 279 (289)
T ss_dssp TC
T ss_pred CC
Confidence 75
No 7
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=100.00 E-value=9.5e-56 Score=419.41 Aligned_cols=217 Identities=26% Similarity=0.405 Sum_probs=180.0
Q ss_pred CCcEEEEeCCCcCccCCCCCcCCCCCCCcCCCCC---CChHHHhhchhHHHHHHHHHhhhhhcccCCCCCHHHHHHHHHH
Q 016198 122 SAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP---ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLE 198 (393)
Q Consensus 122 ak~IVVlTGAGISasSGIPdFRs~~Gl~~~~~~p---~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn~~H~~La~L~ 198 (393)
|++|||+|||||||+||||||||++|+|+. +.+ .+++.|.++|..+|.||.+..... .-..++||++|++|++|+
T Consensus 1 a~~ivvltGAGiS~~SGIPdfR~~~Glw~~-~~~~~~~~~~~f~~~p~~~~~f~~~~~~~~-~~~~a~Pn~~H~~La~L~ 78 (235)
T 1s5p_A 1 KPRVLVLTGAGISAESGIRTFRAADGLWEE-HRVEDVATPEGFDRDPELVQAFYNARRRQL-QQPEIQPNAAHLALAKLQ 78 (235)
T ss_dssp CCCEEEEECTHHHHTTTCCCCCSSSCEETT-EEHHHHSSHHHHHHCHHHHHHHHHHHHHHH-TSTTCCCCHHHHHHHHHH
T ss_pred CCcEEEEechhhhhhhCCCCCCCCCCCccC-CCHhHcccHHHHhhCHHHHHHHHHHHHHHh-hhcCCCCCHHHHHHHHHH
Confidence 689999999999999999999999999974 544 478889999998888886432211 013599999999999999
Q ss_pred h-cCCccEEEEccCcchhhhcCCCc-eeeecccceeecCCCCcccchhhHHHHHHhhChhHHHHHhhhcCCCCCCCCCcC
Q 016198 199 K-AGRIDCMITQNVDRLHHRAGSNP-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFG 276 (393)
Q Consensus 199 ~-~g~l~~ViTQNIDgLh~rAG~~~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~~~~p~~~~~~g 276 (393)
+ .|++.+||||||||||++||.++ +|+||++..++|.+|++.|+.+.
T Consensus 79 ~~~g~~~~viTQNvD~Lh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~------------------------------- 127 (235)
T 1s5p_A 79 DALGDRFLLVTQNIDNLHERAGNTNVIHMHGELLKVRCSQSGQVLDWTG------------------------------- 127 (235)
T ss_dssp HHHGGGEEEEESCCSSHHHHHTCCSCEETTEEEEEEEETTTCCEEECCS-------------------------------
T ss_pred HhhCCceEEEeccccchhhhcCCCcEEEecCCceEEEeCCCCCcccchh-------------------------------
Confidence 9 69999999999999999999888 99999999999999998765321
Q ss_pred cccCCCCCcccccccccccCCCCcCCCCCCccCCh--------HHHHHHHHHHhhCCeEEEeccCcchhhHHHHHHHHHh
Q 016198 277 MKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPD--------DRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHE 348 (393)
Q Consensus 277 ~~~~~d~d~~i~~~~~~~~~~iP~Cp~CGg~LrP~--------~~~~~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~ 348 (393)
+ ++ ...+|+|+.|||.|||+ +.++++.+++++||++||||||++|+|+++|+..+++
T Consensus 128 -------~--~~------~~~~p~c~~Cgg~lrP~vv~FGE~p~~~~~a~~~~~~adl~lviGTSl~V~Pa~~l~~~a~~ 192 (235)
T 1s5p_A 128 -------D--VT------PEDKCHCCQFPAPLRPHVVWFGEMPLGMDEIYMALSMADIFIAIGTSGHVYPAAGFVHEAKL 192 (235)
T ss_dssp -------C--CC------SSCCC-------CEEEEECCTTSCCSSHHHHHHHHHHCSEEEEESCCTTEETGGGHHHHHHH
T ss_pred -------h--cc------CCCCCCCCCCCCeecCcEEEeCCCHHHHHHHHHHHhcCCEEEEECcCCchhhHHHHHHHHHH
Confidence 0 11 11578999999999999 3688999999999999999999999999999999988
Q ss_pred CCCeEEEECCCCCCCCCcccEEEECcHHHHHHHHHHhC
Q 016198 349 AGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 349 ~ga~li~IN~~~t~~d~~~~l~I~~d~~~vL~~L~~~~ 386 (393)
.|+++|+||+++++.++.++++|.++++++|++|++.+
T Consensus 193 ~g~~~i~iN~~~t~~~~~~~~~i~~~~~~~l~~l~~~l 230 (235)
T 1s5p_A 193 HGAHTVELNLEPSQVGNEFAEKYYGPASQVVPEFVEKL 230 (235)
T ss_dssp TTCEEEEEESSSCC---CCSEEEESCHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCCccccEEEeCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999998864
No 8
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-55 Score=435.46 Aligned_cols=261 Identities=23% Similarity=0.321 Sum_probs=204.5
Q ss_pred HHHHHHHHHHHHcCCcEEEEeCCCcCccCCCCCcCCCCCCCcCC-----CC---CCChHHHhhchhHHHHHHHHHhhhhh
Q 016198 109 IEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSG-----FK---PITHQQFVRSSRARRRYWARSYAGWR 180 (393)
Q Consensus 109 ~~~l~~l~~~i~~ak~IVVlTGAGISasSGIPdFRs~~Gl~~~~-----~~---p~~~~~f~~~~~~~~~~w~~~~~~~~ 180 (393)
.+++++|+++|++|++|||+|||||||+||||||||++|+|+.. +. .++++.|..+|..+|.|| ...
T Consensus 33 ~~~i~~l~~~l~~a~~IvvlTGAGISt~SGIPdFR~~~Glw~~~~~~~l~~p~~~~~~~~F~~~P~~f~~~~-----~~~ 107 (354)
T 2hjh_A 33 FFTIDHFIQKLHTARKILVLTGAGVSTSLGIPDFRSSEGFYSKIKHLGLDDPQDVFNYNIFMHDPSVFYNIA-----NMV 107 (354)
T ss_dssp CCSHHHHHHHHHHCSSEEEEECGGGGGGGTCCCSSSTTSHHHHTGGGCCSSGGGGGBHHHHHHCTHHHHHHG-----GGG
T ss_pred HHHHHHHHHHHHhCCcEEEEECchhhHhhCCCcccCcchHHHHHHhhcCCCHHHhCCHHHHhcCHHHHHHHH-----HHH
Confidence 35799999999999999999999999999999999999999752 12 357788888887544333 112
Q ss_pred cccCCCCCHHHHHHHHHHhcCCccEEEEccCcchhhhcCCC--c-eeeecccceeecCCCCcccchhhHHHHHHhhChhH
Q 016198 181 RFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSN--P-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKW 257 (393)
Q Consensus 181 ~~~~a~Pn~~H~~La~L~~~g~l~~ViTQNIDgLh~rAG~~--~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~np~~ 257 (393)
....++||++|++|++|+++|++++||||||||||++||++ . +|+||+++.++|.+|++.++.+.+.+.+...++
T Consensus 108 ~~~~~~Pn~~H~aLa~Le~~g~l~~viTQNVDgLh~rAG~~~~~vielHGsl~~~~C~~C~~~~~~~~~~~~~~~~~~-- 185 (354)
T 2hjh_A 108 LPPEKIYSPLHSFIKMLQMKGKLLRNYTQNIDNLESYAGISTDKLVQCHGSFATATCVTCHWNLPGERIFNKIRNLEL-- 185 (354)
T ss_dssp CCCCSCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCTTTEEETTEEEEEEEETTTCCEEEGGGGHHHHHTTCC--
T ss_pred ccccCCCCHHHHHHHHHHHcCCceEEEecccCcHHHHcCCCccCEEEecCCcCccccCCCCCcCCHHHHHHHhhccCC--
Confidence 22468999999999999999999999999999999999985 3 999999999999999999988877766543221
Q ss_pred HHHHhhhcCCCCCCCCCcC-------cccCC-CCCcccccccccccCCCCcCCCCCCccCCh----------HHHHHHHH
Q 016198 258 AEAIESLDYGSPGSDRSFG-------MKQRP-DGDIEIDEKFWEEDFHIPTCQKCNGVLKPD----------DRADKAME 319 (393)
Q Consensus 258 ~~~~~~l~~~~p~~~~~~g-------~~~~~-d~d~~i~~~~~~~~~~iP~Cp~CGg~LrP~----------~~~~~a~~ 319 (393)
|.|..+.+ +...+ .++..+.... ....+.|..|||.|||+ ..++.+.+
T Consensus 186 -----------P~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~c~g~lrPdVV~FGE~lp~~~~~~a~~ 251 (354)
T 2hjh_A 186 -----------PLCPYCYKKRREYFPEGYNNKVGVAASQGSM---SERPPYILNSYGVLKPDITFFGEALPNKFHKSIRE 251 (354)
T ss_dssp -----------CBCTTTHHHHHHHCCC--------------------CCTTSCTTTTBEEEEECCBTSBCCHHHHHHHHH
T ss_pred -----------CcCcccccccccccccccccccccccccccc---ccccccccccCCeeCCChhhccccCCHHHHHHHHH
Confidence 11111110 00000 1122222111 11357899999999999 45788889
Q ss_pred HHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCCcccEEEECcHHHHHHHHHHhCCCCCCC
Q 016198 320 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSLSIPA 392 (393)
Q Consensus 320 ~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~~d~~~vL~~L~~~~~~~~~~ 392 (393)
++++||++|||||||+|+|+++|+..+. .++++|+||++++..+ .++++|.++|+++|++|++.++..||.
T Consensus 252 ~~~~aDllLviGTSL~V~Paa~lv~~~~-~~~~~v~IN~~~t~~~-~~dl~i~g~~~~vl~~L~~~lgw~~p~ 322 (354)
T 2hjh_A 252 DILECDLLICIGTSLKVAPVSEIVNMVP-SHVPQVLINRDPVKHA-EFDLSLLGYCDDIAAMVAQKCGWTIPH 322 (354)
T ss_dssp HTTTCCEEEEESCCCCEETGGGHHHHSC-TTSCEEEEESSCCTTS-CCSEEEESCHHHHHHHHHHHHTCCCCS
T ss_pred HHhhCCEEEEECcCCCchhHHHHHHHHh-cCCcEEEEcCCCCCCC-CcCEEEeCCHHHHHHHHHHHcCCCCch
Confidence 9999999999999999999999998764 5899999999999864 589999999999999999999999984
No 9
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=100.00 E-value=5.8e-55 Score=424.15 Aligned_cols=230 Identities=25% Similarity=0.381 Sum_probs=191.2
Q ss_pred HHHHHHHHHHHc--CCcEEEEeCCCcCccCCCCCcCCCC-CCCcC--CCC---C---CChHHHhhchhHHHHHHHHHhhh
Q 016198 110 EDINQLYQFFDN--SAKLIVLTGAGISTECGIPDYRSPN-GAYSS--GFK---P---ITHQQFVRSSRARRRYWARSYAG 178 (393)
Q Consensus 110 ~~l~~l~~~i~~--ak~IVVlTGAGISasSGIPdFRs~~-Gl~~~--~~~---p---~~~~~f~~~~~~~~~~w~~~~~~ 178 (393)
.++++++++|++ |++|||+|||||||+||||||||++ |+|.. .+. | ++...|.++|..+|.+|.+.
T Consensus 9 ~~l~~la~~i~~~~a~~IvvlTGAGISteSGIPdFR~~~~Glw~~~~~~~l~~pe~~~~~~~f~~~P~~f~~~~~~~--- 85 (285)
T 3glr_A 9 LSLQDVAELIRARACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPKPFFTLAKEL--- 85 (285)
T ss_dssp CCHHHHHHHHHTTSCCCEEEEECGGGTGGGTCCCTTSSSSHHHHHHHTTCCSSGGGGGCHHHHHHCCHHHHHHHHHH---
T ss_pred cCHHHHHHHHHhcCCCeEEEEeCCccchhhCCCCcccCCCccccchhccCCCCHHHHhCHHHHhhCcHHHHHHHHHh---
Confidence 368999999997 8999999999999999999999995 99974 122 1 24555888887655544321
Q ss_pred hhcccCCCCCHHHHHHHHHHhcCCccEEEEccCcchhhhcCCC--c-eeeecccceeecCCCCcccchhhHHHHHHhhCh
Q 016198 179 WRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSN--P-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNP 255 (393)
Q Consensus 179 ~~~~~~a~Pn~~H~~La~L~~~g~l~~ViTQNIDgLh~rAG~~--~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~np 255 (393)
....++||++|++|++|+++|++++||||||||||++||++ + +|+||++..++|.+|++.|+.+.+...+.
T Consensus 86 --~~~~a~Pn~~H~~La~Le~~g~l~~viTQNIDgLh~rAG~~~~~VielHGs~~~~~C~~C~~~~~~~~~~~~i~---- 159 (285)
T 3glr_A 86 --YPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGEDIRADVM---- 159 (285)
T ss_dssp --STTSCCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEETTTCCEEEGGGGHHHHH----
T ss_pred --hhccCCCCHHHHHHHHHHHcCCCceEEeeeecchHhhcCCCcccEEEecCCCCeEEECCCCCcCCHHHHHHHhh----
Confidence 22478999999999999999999999999999999999985 3 99999999999999999888765432220
Q ss_pred hHHHHHhhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCcCCCCCCccCCh---------HHHHHHHHHHhhCCe
Q 016198 256 KWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPD---------DRADKAMEAAKECDA 326 (393)
Q Consensus 256 ~~~~~~~~l~~~~p~~~~~~g~~~~~d~d~~i~~~~~~~~~~iP~Cp~CGg~LrP~---------~~~~~a~~~~~~aDl 326 (393)
...+|+||.|||.|||+ ..+..+.+.+.+||+
T Consensus 160 ---------------------------------------~~~~P~C~~Cgg~lrP~IV~FGE~lp~~~~~~~~~~~~aDl 200 (285)
T 3glr_A 160 ---------------------------------------ADRVPRCPVCTGVVKPDIVFFGEPLPQRFLLHVVDFPMADL 200 (285)
T ss_dssp ---------------------------------------TTCCCBCTTTCCBEEEEECCTTSBCCGGGGGHHHHHHHCSE
T ss_pred ---------------------------------------cCCCCCCCCCCCccCCcEEEeCCcCCHHHHHHHHHHhcCCE
Confidence 12579999999999999 223355778899999
Q ss_pred EEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCC----CCCcccEEEECcHHHHHHHHHHhCCC
Q 016198 327 FLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETR----ADDLTTLKISARLGEILPRVLDVGSL 388 (393)
Q Consensus 327 lLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~----~d~~~~l~I~~d~~~vL~~L~~~~~~ 388 (393)
+|||||||+|+|++.|+.++ +.++++|+||++++. .+..+|+.+.++|++++++|++.++-
T Consensus 201 llviGTSl~V~Paa~l~~~~-~~~~~~v~IN~~~~~~~~~~~~~~d~~~~g~~~~~~~~L~~~lgw 265 (285)
T 3glr_A 201 LLILGTSLEVEPFASLTEAV-RSSVPRLLINRDLVGPLAWHPRSRDVAQLGDVVHGVESLVELLGW 265 (285)
T ss_dssp EEEESCCCCEETTGGGGGSS-CTTSCEEEEESSCCTHHHHSCCTTEEEEESCHHHHHHHHHHHHTC
T ss_pred EEEeCCCCccccHHHHHHHH-hCCCcEEEECCCCcCccccCCCCccEEEcCCHHHHHHHHHHHhCC
Confidence 99999999999999999765 458899999999986 46789999999999999999998763
No 10
>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-54 Score=440.77 Aligned_cols=261 Identities=24% Similarity=0.354 Sum_probs=207.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEeCCCcCccCCCCCcCCCCCCCcCC-----CCC---CChHHHhhchhHHHHHHHHHhhhhh
Q 016198 109 IEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSG-----FKP---ITHQQFVRSSRARRRYWARSYAGWR 180 (393)
Q Consensus 109 ~~~l~~l~~~i~~ak~IVVlTGAGISasSGIPdFRs~~Gl~~~~-----~~p---~~~~~f~~~~~~~~~~w~~~~~~~~ 180 (393)
.+++++++++|++|++|||+|||||||+||||||||++|+|+.. ..| ++++.|.++|.. ||. ++...
T Consensus 171 ~~~i~~l~~~L~~ak~IVVLTGAGISTeSGIPDFRs~~GLw~~~~~~gl~~Pe~v~s~~~F~~dP~~---Fy~--~~r~~ 245 (492)
T 4iao_A 171 FFTIDHFIQKLHTARKILVLTGAGVSTSLGIPDFRSSEGFYSKIKHLGLDDPQDVFNYNIFMHDPSV---FYN--IANMV 245 (492)
T ss_dssp CCSHHHHHHHHHHCSCEEEEECGGGGGGGTCCCSSSTTSHHHHHHTSCCSCGGGGGBHHHHHHCHHH---HHH--HGGGG
T ss_pred HHHHHHHHHHHHhCCcEEEEeCcccccccCCccccCchHHHHhhhhcCCCCHHHhcCHHHHhhChHH---HHH--HHHHh
Confidence 46799999999999999999999999999999999999999741 123 477888888875 443 22222
Q ss_pred cccCCCCCHHHHHHHHHHhcCCccEEEEccCcchhhhcCCC--c-eeeecccceeecCCCCcccchhhHHHHHHhhChhH
Q 016198 181 RFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSN--P-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKW 257 (393)
Q Consensus 181 ~~~~a~Pn~~H~~La~L~~~g~l~~ViTQNIDgLh~rAG~~--~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~np~~ 257 (393)
....++||++|++|++|+++|++.+||||||||||++||++ + +|+||+++..+|.+|++.++.+.+.+.+...++
T Consensus 246 ~~~~~~Pn~aH~aLa~Le~~G~l~~VITQNIDgLHqrAG~~s~~ViELHGsl~~~~C~~Cg~~~~~e~i~~~i~~~~~-- 323 (492)
T 4iao_A 246 LPPEKIYSPLHSFIKMLQMKGKLLRNYTQNIDNLESYAGISTDKLVQCHGSFATATCVTCHWNLPGERIFNKIRNLEL-- 323 (492)
T ss_dssp CCCSSCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCTTTEEETTCCTTEEEETTTCCEEEGGGGHHHHHTTCC--
T ss_pred hCCcCCCCHHHHHHHHHHHCCCCceeEeccccchHhhcCCChhhEEeecCccceeecCCCCCcCCHHHHHHHHhccCC--
Confidence 22468999999999999999999999999999999999985 3 999999999999999999988877665543321
Q ss_pred HHHHhhhcCCCCCCCCCcC--------cccCCCCCcccccccccccCCCCcCCCCCCccCCh----------HHHHHHHH
Q 016198 258 AEAIESLDYGSPGSDRSFG--------MKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPD----------DRADKAME 319 (393)
Q Consensus 258 ~~~~~~l~~~~p~~~~~~g--------~~~~~d~d~~i~~~~~~~~~~iP~Cp~CGg~LrP~----------~~~~~a~~ 319 (393)
|.|..+.+ ....++++.+.++. .....|.|+.|||.|||+ +.++++.+
T Consensus 324 -----------P~Cp~Cg~~~~~~~~~~~~~~dg~~~~~~~---~~~~~~~c~~cgG~LRPdIVfFGE~LP~~~~~~a~~ 389 (492)
T 4iao_A 324 -----------PLCPYCYKKRREYFPEGYNNKVGVAASQGS---MSERPPYILNSYGVLKPDITFFGEALPNKFHKSIRE 389 (492)
T ss_dssp -----------CBCTTTHHHHHHHSTTCCCCC--------C---CTTCCTTCCTTTTBEEESSCCBTSBCCHHHHHHHHH
T ss_pred -----------CCCccccccccccccccccccccccccccc---ccccccccccCCCcCCCCEEECCCCCCHHHHHHHHH
Confidence 22222210 01234454444332 123468999999999999 45788888
Q ss_pred HHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCCcccEEEECcHHHHHHHHHHhCCCCCCC
Q 016198 320 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSLSIPA 392 (393)
Q Consensus 320 ~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~~d~~~vL~~L~~~~~~~~~~ 392 (393)
.+++||++|||||||+|+|+++|+.++. .++++|+||++++.. ..+|+.|.|+|+++++.|++.++..||.
T Consensus 390 ~~~~aDLlLVIGTSL~VyPaA~Lv~~a~-~~~p~ViIN~ept~~-~~~Dl~l~G~cdevv~~L~~~LGw~ip~ 460 (492)
T 4iao_A 390 DILECDLLICIGTSLKVAPVSEIVNMVP-SHVPQVLINRDPVKH-AEFDLSLLGYCDDIAAMVAQKCGWTIPH 460 (492)
T ss_dssp HTTTCSEEEEESCCCCEETGGGHHHHSB-TTSCEEEEESSCCTT-SCCSEEEESCHHHHHHHHHHHTTCCCCS
T ss_pred HHhhCCEEEEeccCCCccchhhHHHHHh-cCCcEEEEcCCCCCC-CCccEEEeCCHHHHHHHHHHHhCCCCCh
Confidence 9999999999999999999999998764 688999999999985 4689999999999999999999999985
No 11
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=100.00 E-value=2.7e-54 Score=431.95 Aligned_cols=238 Identities=22% Similarity=0.365 Sum_probs=180.7
Q ss_pred CCCCHHHHHHHHHHHHc--CCcEEEEeCCCcCccCCCCCcCCCC-CCCcCC--CC---C---CChHHHhhchhHHHHHHH
Q 016198 105 DPPSIEDINQLYQFFDN--SAKLIVLTGAGISTECGIPDYRSPN-GAYSSG--FK---P---ITHQQFVRSSRARRRYWA 173 (393)
Q Consensus 105 ~~~~~~~l~~l~~~i~~--ak~IVVlTGAGISasSGIPdFRs~~-Gl~~~~--~~---p---~~~~~f~~~~~~~~~~w~ 173 (393)
.++...+++.|+++|++ |++|||+|||||||+||||||||++ |+|... +. | ++...|..+|..+|.||.
T Consensus 9 ~~~~~~~i~~l~~~i~~~~a~~IVvlTGAGISteSGIPdFR~~~~Glw~~~~~~~l~~pe~~~s~~~f~~~P~~f~~~~~ 88 (361)
T 1q14_A 9 TASTEMSVRKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAK 88 (361)
T ss_dssp SCCHHHHHHHHHHHHHTSTTCCEEEEECGGGTGGGC--------------CCCCCCSSGGGGGBHHHHHHCCHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHhccCCcEEEEeCcccchhcCCcccccCcchhhhcccccCCCCHHHhcCHHHHhcCHHHHHHHHH
Confidence 33445789999999999 9999999999999999999999995 999752 21 1 355568888876555543
Q ss_pred HHhhhhhcccCCCCCHHHHHHHHHHhcCCccEEEEccCcchhhhcCCC--c-eeeecccceeecCCCCcccchhhHHHHH
Q 016198 174 RSYAGWRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSN--P-LELHGTVYTVVCLDCGFSFCRDLFQDQV 250 (393)
Q Consensus 174 ~~~~~~~~~~~a~Pn~~H~~La~L~~~g~l~~ViTQNIDgLh~rAG~~--~-ielHGs~~~~~C~~C~~~~~~~~~~~~l 250 (393)
+ +....++||.+|++|++|++.|++++||||||||||++||++ . +|+||+++.++|..|++.|+.+.+...+
T Consensus 89 ~-----~~~~~a~Pn~~H~aLa~Le~~g~~~~ViTQNVDgLh~rAG~~~~~VielHGsl~~~~C~~C~~~~~~~~~~~~~ 163 (361)
T 1q14_A 89 E-----LYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPPQVFKSKL 163 (361)
T ss_dssp T-----TSCCCCCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEETTTCCEECTHHHHHHT
T ss_pred H-----HhhCcCCCCHHHHHHHHHHhcCCCcEEEecccchhHhHcCCCcceEEeccccccccCcCCCCccCcHHHHHHHH
Confidence 2 223589999999999999999999999999999999999997 3 9999999999999999988765543222
Q ss_pred HhhChhHHHHHhhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCcCCCCCCccCCh----------HHHHHHHH-
Q 016198 251 KALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPD----------DRADKAME- 319 (393)
Q Consensus 251 ~~~np~~~~~~~~l~~~~p~~~~~~g~~~~~d~d~~i~~~~~~~~~~iP~Cp~CGg~LrP~----------~~~~~a~~- 319 (393)
. . .....+|+||.|||.|||+ ..++.+.+
T Consensus 164 ~--------------~--------------------------~~~~~~P~Cp~Cgg~lrP~VV~FGE~lp~~~~~~~~~a 203 (361)
T 1q14_A 164 A--------------E--------------------------HPIKDFVKCDVCGELVKPAIVFFGEDLPDSFSETWLND 203 (361)
T ss_dssp T--------------S--------------------------SSCSCCCBCTTTCCBEEEEECCBTSCCCHHHHHHHHHH
T ss_pred h--------------h--------------------------cccCCCCCCcCCCCEeCCCcccccccCCHHHHHHHHHH
Confidence 0 0 0012579999999999999 23443433
Q ss_pred ------------HHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCC----CCCcccEEEECcHHHHHHHHH
Q 016198 320 ------------AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETR----ADDLTTLKISARLGEILPRVL 383 (393)
Q Consensus 320 ------------~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~----~d~~~~l~I~~d~~~vL~~L~ 383 (393)
.+.+||+||||||||+|+|+++|+..++ .|+++|+||++++. .+..++++|.++|+++|++|+
T Consensus 204 ~~~l~~~i~~~~~~~~aDllLviGTSl~V~Paa~l~~~~~-~g~~~v~IN~~~t~~~~~~~~~~d~~i~g~~~evl~~L~ 282 (361)
T 1q14_A 204 SEWLREKITTSGKHPQQPLVIVVGTSLAVYPFASLPEEIP-RKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLV 282 (361)
T ss_dssp HHHHHHC--------CCCEEEEESCCCCSTTGGGHHHHSC-TTSEEEEESSSCCHHHHHTCCTTCEEECSCHHHHHHHHH
T ss_pred HHhhhhcchhhhhhccCCEEEEECCCCCchhHHHHHHHHh-cCCeEEEEeCCCccccccCcccccEEEeCCHHHHHHHHH
Confidence 4679999999999999999999998876 59999999999985 246689999999999999999
Q ss_pred HhCCC
Q 016198 384 DVGSL 388 (393)
Q Consensus 384 ~~~~~ 388 (393)
+.++.
T Consensus 283 ~~Lg~ 287 (361)
T 1q14_A 283 EELGW 287 (361)
T ss_dssp HHHTC
T ss_pred HHcCC
Confidence 98775
No 12
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.5e-55 Score=427.98 Aligned_cols=232 Identities=30% Similarity=0.495 Sum_probs=188.7
Q ss_pred HHHHHHHHHHHHcCCcEEEEeCCCcCccCCCCCcCCCCCCCcCCCCCCChHHHhhchhHHHHHHHHHhhhhhcccCCCCC
Q 016198 109 IEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSRARRRYWARSYAGWRRFMAAQPN 188 (393)
Q Consensus 109 ~~~l~~l~~~i~~ak~IVVlTGAGISasSGIPdFRs~~Gl~~~~~~p~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn 188 (393)
++++++|+++|++|++|||+|||||||+|||||||+++|+|+.. .+..+|. | ...+.+++||
T Consensus 31 ~~~i~~l~~~i~~a~~ivvlTGAGISteSGIPdFR~~~Glw~~~-------~~~~~p~---------~--~~~f~~a~Pn 92 (318)
T 3k35_A 31 ERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPHGVWTME-------ERGLAPK---------F--DTTFESARPT 92 (318)
T ss_dssp HHHHHHHHHHHHHCSCEEEEECGGGSGGGTCCCSSSTTCHHHHH-------TTTCCCC---------C--SSCTTTCCCC
T ss_pred HHHHHHHHHHHHhCCCEEEEeccccChhhCCCccccCCCcchhh-------hccCCHH---------H--HHHhhhCCCC
Confidence 67899999999999999999999999999999999999999631 0111221 0 0124579999
Q ss_pred HHHHHHHHHHhcCCccEEEEccCcchhhhcCCC--c-eeeecccceeecCCCCcccchhhHHHHHHhhChhHHHHHhhhc
Q 016198 189 PAHFALASLEKAGRIDCMITQNVDRLHHRAGSN--P-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLD 265 (393)
Q Consensus 189 ~~H~~La~L~~~g~l~~ViTQNIDgLh~rAG~~--~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~ 265 (393)
.+|++|++|+++|++++||||||||||++||++ + +|+||+++..+|.+|++.|+++.+...+
T Consensus 93 ~~H~aLa~Le~~g~~~~viTQNIDgLh~rAG~~~~~VielHGsl~~~~C~~C~~~~~~~~~~~~~--------------- 157 (318)
T 3k35_A 93 QTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTM--------------- 157 (318)
T ss_dssp HHHHHHHHHHHTTCCCEEEECCCSCHHHHBTCCGGGEEETTCCTTEEEETTTCCEEECSSCCSCC---------------
T ss_pred HHHHHHHHHHHcCCceEEEEecccchHhhcCCCccCEEEeCCCCCeeEeCCCCCccchHHhhhhc---------------
Confidence 999999999999999999999999999999996 3 9999999999999999987654321000
Q ss_pred CCCCCCCCCcCcccCCCCCcccccccccccCCCCcCCCCCCccCCh----------HHHHHHHHHHhhCCeEEEeccCcc
Q 016198 266 YGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPD----------DRADKAMEAAKECDAFLVLGSSLM 335 (393)
Q Consensus 266 ~~~p~~~~~~g~~~~~d~d~~i~~~~~~~~~~iP~Cp~CGg~LrP~----------~~~~~a~~~~~~aDllLVvGTSl~ 335 (393)
...++++ .+. ....+.|+.|||.|||+ +.++++.+++++||++|||||||+
T Consensus 158 ------------~~~p~~~------~C~-~~~~~~c~~CgG~LRPdVV~FGE~lP~~~~~~a~~~~~~aDllLViGTSL~ 218 (318)
T 3k35_A 158 ------------GLKATGR------LCT-VAKARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQ 218 (318)
T ss_dssp ------------SSCEEEE------ECC-C--------CCCEEEECCCCTTCCCCHHHHHHHHHHHHTCSEEEEESCCCC
T ss_pred ------------ccCCCCC------cCc-ccccccccCcCCeeCCCEEEccCcCCHHHHHHHHHHHhcCCEEEEEccCCC
Confidence 0000000 000 01234567899999999 568999999999999999999999
Q ss_pred hhhHHHHHHHHHhCCCeEEEECCCCCCCCCcccEEEECcHHHHHHHHHHhCCCCCCC
Q 016198 336 TMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSLSIPA 392 (393)
Q Consensus 336 V~p~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~~d~~~vL~~L~~~~~~~~~~ 392 (393)
|+|+++|+..+.++|+++++||+++|+.|+.++++|+++|+++|++|++.++++||+
T Consensus 219 V~Paa~l~~~a~~~G~~vviIN~~~t~~d~~adl~i~g~~~evl~~L~~~Lg~~iP~ 275 (318)
T 3k35_A 219 IRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMKHLGLEIPA 275 (318)
T ss_dssp STTGGGHHHHHHHTTCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHHHTCCCCC
T ss_pred chhhhhhHHHHHhcCCEEEEECCCCCCCCCcccEEEeCCHHHHHHHHHHHhCCCCCC
Confidence 999999999998999999999999999999999999999999999999999999996
No 13
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=100.00 E-value=1.1e-53 Score=422.48 Aligned_cols=231 Identities=23% Similarity=0.380 Sum_probs=194.1
Q ss_pred HHHHHHHHHHHHc--CCcEEEEeCCCcCccCCCCCcCCCC-CCCcCC--CC---C---CChHHHhhchhHHHHHHHHHhh
Q 016198 109 IEDINQLYQFFDN--SAKLIVLTGAGISTECGIPDYRSPN-GAYSSG--FK---P---ITHQQFVRSSRARRRYWARSYA 177 (393)
Q Consensus 109 ~~~l~~l~~~i~~--ak~IVVlTGAGISasSGIPdFRs~~-Gl~~~~--~~---p---~~~~~f~~~~~~~~~~w~~~~~ 177 (393)
..+++.|+++|++ |++|||+|||||||+||||||||++ |+|+.. +. | ++...|.++|..+|.||.+.
T Consensus 28 ~~~l~~l~~~i~~~~a~~ivvltGAGiSt~SGIPdfR~~~~Glw~~~~~~~l~~p~~~~~~~~f~~~p~~f~~~~r~~-- 105 (323)
T 1j8f_A 28 ELTLEGVARYMQSERCRRVICLVGAGISTSAGIPDFRSPSTGLYDNLEKYHLPYPEAIFEISYFKKHPEPFFALAKEL-- 105 (323)
T ss_dssp SSSHHHHHHHHHSTTCCCEEEEECGGGTGGGTCCCTTCSCSTTSTTTTTTCCSSGGGGGBHHHHHHCCHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhcCCCcEEEEecchhhHhhCCCcccCCCccHHHHhhhcCCCCHHHHcCHHHHhcCHHHHHHHHHHH--
Confidence 3468999999997 8999999999999999999999994 999852 21 2 25556778887666655321
Q ss_pred hhhcccCCCCCHHHHHHHHHHhcCCccEEEEccCcchhhhcCCCc---eeeecccceeecCC--CCcccchhhHHHHHHh
Q 016198 178 GWRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP---LELHGTVYTVVCLD--CGFSFCRDLFQDQVKA 252 (393)
Q Consensus 178 ~~~~~~~a~Pn~~H~~La~L~~~g~l~~ViTQNIDgLh~rAG~~~---ielHGs~~~~~C~~--C~~~~~~~~~~~~l~~ 252 (393)
....++||++|++|++|+++|++++||||||||||++||++. +|+||++..++|.+ |++.|+.+.+.+.+.
T Consensus 106 ---~~~~a~Pn~~H~aLa~L~~~g~~~~viTQNIDgLh~~AG~~~~~VielHGs~~~~~C~~~~C~~~~~~~~~~~~i~- 181 (323)
T 1j8f_A 106 ---YPGQFKPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTSHCVSASCRHEYPLSWMKEKIF- 181 (323)
T ss_dssp ---SSSSCCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEESCTTTCCEECHHHHHHHHH-
T ss_pred ---hhCcCCCCHHHHHHHHHHhcCCCcEEEeecccchHHHcCCCcccEEEeeCCcceeecCCCccCccccHHHHHHhhc-
Confidence 124899999999999999999999999999999999999863 99999999999999 999887654322210
Q ss_pred hChhHHHHHhhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCcCCCCCCccCCh----------HHHHHHHHHHh
Q 016198 253 LNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPD----------DRADKAMEAAK 322 (393)
Q Consensus 253 ~np~~~~~~~~l~~~~p~~~~~~g~~~~~d~d~~i~~~~~~~~~~iP~Cp~CGg~LrP~----------~~~~~a~~~~~ 322 (393)
...+|+||+|||.|||+ +.++++.++++
T Consensus 182 ------------------------------------------~~~~P~C~~Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~ 219 (323)
T 1j8f_A 182 ------------------------------------------SEVTPKCEDCQSLVKPDIVFFGESLPARFFSCMQSDFL 219 (323)
T ss_dssp ------------------------------------------TTCCCBCTTTCCBEEEEECCBTSCCCHHHHHHHHHGGG
T ss_pred ------------------------------------------cCCCCCCcCCCCccCCCEEecCCcCCHHHHHHHHHHHh
Confidence 12579999999999999 46788889999
Q ss_pred hCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--------------------cccEEEECcHHHHHHHH
Q 016198 323 ECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--------------------LTTLKISARLGEILPRV 382 (393)
Q Consensus 323 ~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--------------------~~~l~I~~d~~~vL~~L 382 (393)
+||++|||||||+|+|+++|+.++.+ ++++++||++++..++ .+++.|.++|+++|++|
T Consensus 220 ~aDlllviGTSl~V~P~a~l~~~~~~-~~~~v~IN~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~gd~~~~l~~L 298 (323)
T 1j8f_A 220 KVDLLLVMGTSLQVQPFASLISKAPL-STPRLLINKEKAGQSDPFLGMIMGLGGGMDFDSKKAYRDVAWLGECDQGCLAL 298 (323)
T ss_dssp SCSEEEEESSCSCSHHHHHHHTTSCT-TCCEEEEESSCCCCCCHHHHHHHHHHTCCCSSSTTCCSEEEEESCHHHHHHHH
T ss_pred CCCEEEEEeeCcccHHHHHHHHHHHc-CCcEEEEeCCCCCCCcccccccccccccccccccccceeEEEeCCHHHHHHHH
Confidence 99999999999999999999998764 4677899999998754 37899999999999999
Q ss_pred HHhCCC
Q 016198 383 LDVGSL 388 (393)
Q Consensus 383 ~~~~~~ 388 (393)
++.++.
T Consensus 299 ~~~lgw 304 (323)
T 1j8f_A 299 AELLGW 304 (323)
T ss_dssp HHHTTC
T ss_pred HHHcCC
Confidence 998875
No 14
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Probab=100.00 E-value=3.4e-54 Score=427.13 Aligned_cols=232 Identities=30% Similarity=0.501 Sum_probs=192.4
Q ss_pred HHHHHHHHHHHHcCCcEEEEeCCCcCccCCCCCcCCCCCCCcCCCCCCChHHHhhchhHHHHHHHHHhhhhhcccCCCCC
Q 016198 109 IEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSRARRRYWARSYAGWRRFMAAQPN 188 (393)
Q Consensus 109 ~~~l~~l~~~i~~ak~IVVlTGAGISasSGIPdFRs~~Gl~~~~~~p~~~~~f~~~~~~~~~~w~~~~~~~~~~~~a~Pn 188 (393)
++++++|+++|++|++|||+|||||||+|||||||+++|+|+. ..+..+|. | ...+..++||
T Consensus 31 ~~~i~~la~~i~~a~~iVvlTGAGISteSGIPDFR~~~Glw~~-------~~~~~~p~----~-------~~~f~~a~Pn 92 (355)
T 3pki_A 31 ERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPHGVWTM-------EERGLAPK----F-------DTTFESARPT 92 (355)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECGGGSGGGTCCCSSSTTCHHHH-------HHTTCCCC----C-------SSCTTTCCCC
T ss_pred HHHHHHHHHHHHhCCCEEEEeccccchhhCCCccccCCCccch-------hhccCChH----H-------HHHHhhCCCC
Confidence 6789999999999999999999999999999999999999963 01111121 0 0124579999
Q ss_pred HHHHHHHHHHhcCCccEEEEccCcchhhhcCCC--c-eeeecccceeecCCCCcccchhhHHHHHHhhChhHHHHHhhhc
Q 016198 189 PAHFALASLEKAGRIDCMITQNVDRLHHRAGSN--P-LELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLD 265 (393)
Q Consensus 189 ~~H~~La~L~~~g~l~~ViTQNIDgLh~rAG~~--~-ielHGs~~~~~C~~C~~~~~~~~~~~~l~~~np~~~~~~~~l~ 265 (393)
.+|++|++|+++|++.+||||||||||++||++ + +|+||+++..+|.+|++.|.++.+...+
T Consensus 93 ~~H~aLa~Le~~g~l~~viTQNIDgLh~rAG~~~~~VieLHGsl~~~~C~~C~~~~~~~~~~~~~--------------- 157 (355)
T 3pki_A 93 QTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTM--------------- 157 (355)
T ss_dssp HHHHHHHHHHHTTCCSEEEECCCSCHHHHEEEEGGGEEETTCCTTEEEETTTCCEEEBSSCCSCC---------------
T ss_pred HHHHHHHHHHHcCCCcEEEEecccchHhhcCCCcccEEEeCCCCCceeeCCCCCccchHHhhhhc---------------
Confidence 999999999999999999999999999999995 3 9999999999999999987654321000
Q ss_pred CCCCCCCCCcCcccCCCCCcccccccccccCCCCcCCCCCCccCCh----------HHHHHHHHHHhhCCeEEEeccCcc
Q 016198 266 YGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPD----------DRADKAMEAAKECDAFLVLGSSLM 335 (393)
Q Consensus 266 ~~~p~~~~~~g~~~~~d~d~~i~~~~~~~~~~iP~Cp~CGg~LrP~----------~~~~~a~~~~~~aDllLVvGTSl~ 335 (393)
...+++. .+. ....+.|+.|||.|||+ ..++++.+++++||++|||||||+
T Consensus 158 ------------~~~~~~~------~C~-~~~~~~~~~CgG~LRPdVV~FGE~lP~~~~~~A~~~~~~aDllLViGTSL~ 218 (355)
T 3pki_A 158 ------------GLKATGR------LCT-VAKARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQ 218 (355)
T ss_dssp ------------SSCEEEE------ECC-CCCBTTBCCCCCEEEECCCCTTSCCCHHHHHHHHHHHHHCSEEEEESCCCC
T ss_pred ------------ccCCCCC------ccc-cccccccccCCCccCCCEEECCCcCCHHHHHHHHHHHhcCCEEEEEeeCCC
Confidence 0000000 000 00234578999999999 468899999999999999999999
Q ss_pred hhhHHHHHHHHHhCCCeEEEECCCCCCCCCcccEEEECcHHHHHHHHHHhCCCCCCC
Q 016198 336 TMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGSLSIPA 392 (393)
Q Consensus 336 V~p~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~~d~~~vL~~L~~~~~~~~~~ 392 (393)
|+|+++|+..+.+.|+++++||+++|..|+.++++|+++|+++|++|++.++++||+
T Consensus 219 V~Paa~Lp~~a~~~G~~vviIN~~pT~~d~~adl~i~g~a~evl~~L~~~Lg~~iP~ 275 (355)
T 3pki_A 219 IRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMEHLGLEIPA 275 (355)
T ss_dssp STTGGGTTHHHHHTTCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHHTTCCCCC
T ss_pred chhhhhhHHHHHhcCCEEEEECCCCCCCCCccCEEEeCCHHHHHHHHHHHhCCCCCC
Confidence 999999999998899999999999999999999999999999999999999999996
No 15
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=92.11 E-value=0.37 Score=50.15 Aligned_cols=67 Identities=12% Similarity=0.029 Sum_probs=51.1
Q ss_pred HHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhCC
Q 016198 319 EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 387 (393)
Q Consensus 319 ~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~~ 387 (393)
..+.++|+||.+|+.+.......+... ..++++|.|+.++...+. ..++.|.+|+.++|..|++.+.
T Consensus 285 ~~~~~aDlvl~~G~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 353 (578)
T 3lq1_A 285 IDKLTPEVVIRFGSMPVSKPLKNWLEQ--LSDIRFYVVDPGAAWKDPIKAVTDMIHCDERFLLDIMQQNMP 353 (578)
T ss_dssp HHHTCCSEEEEESSCCSCHHHHHHHHH--CCSSEEEEECTTCCCCCTTCCCSEEECSCHHHHHHHHHHHSC
T ss_pred cccCCCCEEEEeCCcccchhHHHHHhc--CCCCEEEEECCCCCcCCCCcCceEEEEeCHHHHHHHHHhhcc
Confidence 357799999999998755444444322 247899999999876654 4678999999999999988653
No 16
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=90.90 E-value=0.48 Score=49.22 Aligned_cols=68 Identities=4% Similarity=-0.021 Sum_probs=51.3
Q ss_pred HHHHHhhCCeEEEeccC-cchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhCC
Q 016198 317 AMEAAKECDAFLVLGSS-LMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 387 (393)
Q Consensus 317 a~~~~~~aDllLVvGTS-l~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~~ 387 (393)
+.+.++++|++|.+|+. +.-.....+. ...++++|.|+.++...+. ..++.|.+|+.++|.+|.+.+.
T Consensus 281 ~~~~l~~aDlvl~iG~~~~~~~~~~~~~---~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 351 (573)
T 2iht_A 281 LQTMFAPVDLVLTVGYDYAEDLRPSMWQ---KGIEKKTVRISPTVNPIPRVYRPDVDVVTDVLAFVEHFETATA 351 (573)
T ss_dssp HHHHHTTCCEEEEETCCGGGCCCHHHHC---CSSCCEEEEEESSCCSCTTTCCCSEEEESCHHHHHHHHHHHTT
T ss_pred HHHHHhhCCEEEEECCCccccccccccC---CCCCCeEEEEeCCHHHhCCCcCCCeeEeCCHHHHHHHHHHhcc
Confidence 44567899999999998 7543333332 1147899999999877665 4688999999999999988653
No 17
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=90.07 E-value=0.54 Score=48.63 Aligned_cols=66 Identities=21% Similarity=0.162 Sum_probs=48.8
Q ss_pred HHHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHH
Q 016198 316 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVL 383 (393)
Q Consensus 316 ~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~ 383 (393)
.+.+.++++|++|++|+.+.-.....+.... ...++|.|+.++...+. ..++.|.+|+.++|..|.
T Consensus 271 ~~~~~~~~aDlvl~iG~~~~~~~~~~~~~~~--~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~l~ 338 (556)
T 3hww_A 271 KATSELQQAQIVVQLGSSLTGKRLLQWQASC--EPEEYWIVDDIEGRLDPAHHRGRRLIANIADWLELHP 338 (556)
T ss_dssp HHHHHHTTCSEEEEESBCCCCHHHHHHHHHC--CCSEEEEEESSCSCCCTTCCSEEEEESCHHHHHHHSC
T ss_pred hhhhcccCCCEEEEcCCCcccHHHHHHHhcC--CCCeEEEECCCCccCCCCCCceEEEEcCHHHHHHhcc
Confidence 4456778999999999999654444443322 23489999998877665 467889999999998753
No 18
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=89.77 E-value=0.87 Score=47.60 Aligned_cols=66 Identities=6% Similarity=0.091 Sum_probs=49.1
Q ss_pred HHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhCC
Q 016198 319 EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 387 (393)
Q Consensus 319 ~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~~ 387 (393)
+.++ +|+||.||+.+.......+.... .+.++|.|+.++...+. ..++.|.+|+.++|.+|++.+.
T Consensus 306 ~~~~-~Dlvl~iG~~~~~~~~~~~~~~~--~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 373 (604)
T 2x7j_A 306 RKLR-PDVVIRFGPMPVSKPVFLWLKDD--PTIQQIVIDEDGGWRDPTQASAHMIHCNASVFAEEIMAGLT 373 (604)
T ss_dssp HHHC-CSEEEEESSCCSCHHHHHHHHHC--TTSEEEEECTTCCCCCTTSCCSEEECSCHHHHHHHHHHTSC
T ss_pred hhcC-CCEEEEECCcCccHHHHHHHhhC--CCCeEEEECCCCCccCCCccceEEEEcCHHHHHHHHHHhhc
Confidence 3454 89999999998654433333221 16789999999887765 4678899999999999988763
No 19
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=89.27 E-value=0.5 Score=48.77 Aligned_cols=64 Identities=9% Similarity=0.202 Sum_probs=49.3
Q ss_pred HHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhCC
Q 016198 317 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 387 (393)
Q Consensus 317 a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~~ 387 (393)
+.+.+.++|+||++|+.+....+ ...++++|.|+..+...+. ..++.|.+|+.++|.+|++.+.
T Consensus 259 ~~~~~~~aDlvl~iG~~~~~~~~-------~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 324 (549)
T 3eya_A 259 GFHTMMNADTLVLLGTQFPYRAF-------YPTDAKIIQIDINPASIGAHSKVDMALVGDIKSTLRALLPLVE 324 (549)
T ss_dssp HHHHHHHCSEEEEESCCCCCGGG-------SCSSSEEEEEESCGGGTTSSSCCSEEEECCHHHHHHHHGGGSC
T ss_pred HHHHHHhCCEEEEECCCCCcccc-------CCCCCeEEEEeCCHHHhCCCCCCCeEEEeCHHHHHHHHHHhcc
Confidence 34567899999999999864321 1246889999998877654 4678899999999999988664
No 20
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=89.02 E-value=0.55 Score=48.73 Aligned_cols=66 Identities=9% Similarity=0.104 Sum_probs=49.1
Q ss_pred HHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhCC
Q 016198 318 MEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 387 (393)
Q Consensus 318 ~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~~ 387 (393)
.+.++++|++|.+|+.........+. ..++++|.|+.++...+. ..++.|.+|+.++|.+|.+.+.
T Consensus 269 ~~~l~~aDlvl~lG~~~~~~~~~~~~----~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 336 (566)
T 1ozh_A 269 DRLLQLADLVICIGYSPVEYEPAMWN----SGNATLVHIDVLPAYEERNYTPDVELVGDIAGTLNKLAQNID 336 (566)
T ss_dssp HHHHHHCSEEEEESCCGGGSCGGGTC----CSCSEEEEEESSCCCCBTTBCCSEEEESCHHHHHHHHHHTCC
T ss_pred HHHHHhCCEEEEECCCCCcCCccccC----CCCCcEEEEeCCHHHhCCCCCCCEEEEeCHHHHHHHHHHhcc
Confidence 34677899999999965443222221 236899999999877655 4688999999999999988663
No 21
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=88.73 E-value=0.42 Score=49.81 Aligned_cols=69 Identities=14% Similarity=0.153 Sum_probs=49.0
Q ss_pred HHHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 016198 316 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 316 ~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~ 386 (393)
.+.+.+.++|+||.||+.+...-...+ ... ..++++|.|+.++...+. ..++.|.+|+.++|.+|.+.+
T Consensus 271 ~~~~~l~~aDlvl~iG~~~~~~~~~~~-~~~-~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l 341 (590)
T 1ybh_A 271 YANYAVEHSDLLLAFGVRFDDRVTGKL-EAF-ASRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGMNKVL 341 (590)
T ss_dssp HHHHHHHHCSEEEEESCCCCHHHHSSG-GGT-TTTSEEEEEESCTTTTTSSSCCSEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEEcCCCCccccCcc-ccc-CCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhh
Confidence 344567899999999998843211111 111 136789999999877665 568899999999999987643
No 22
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=88.15 E-value=0.69 Score=48.40 Aligned_cols=67 Identities=18% Similarity=0.207 Sum_probs=50.3
Q ss_pred HHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhCC
Q 016198 317 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 387 (393)
Q Consensus 317 a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~~ 387 (393)
+.+.+.++|+||.+|+.+....+ .... ..++++|.|+.++...+. ..++.|.+|+..+|.+|++.+.
T Consensus 270 ~~~~l~~aDlvl~iG~~~~~~~~---~~~~-~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 338 (603)
T 4feg_A 270 ANEALAQADVVLFVGNNYPFAEV---SKAF-KNTRYFLQIDIDPAKLGKRHKTDIAVLADAQKTLAAILAQVS 338 (603)
T ss_dssp HHHHHHHCSEEEEESCCCTTTTT---TTTT-TTCSEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHTCC
T ss_pred HHHHHHhCCEEEEECCCCCcccc---cccC-CCCCeEEEEeCCHHHhCCccCCCEEEEeCHHHHHHHHHHhhh
Confidence 34567899999999999864222 1111 236899999998877654 4678999999999999998764
No 23
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=87.92 E-value=0.42 Score=49.52 Aligned_cols=68 Identities=9% Similarity=0.106 Sum_probs=47.8
Q ss_pred HHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 016198 319 EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 319 ~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~ 386 (393)
+.++++|+||++|+.+.-.............++++|.|+.++...+. ..++.|.+|+.++|.+|.+.+
T Consensus 268 ~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~ii~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l 337 (568)
T 2c31_A 268 FALAQCDVCVLIGARLNWLMQHGKGKTWGDELKKYVQIDIQANEMDSNQPIAAPVVGDIKSAVSLLRKAL 337 (568)
T ss_dssp HHHHHCSEEEEESCCCSGGGGGGCSGGGTTSCCEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHH
T ss_pred hhhccCCEEEEECCCCccccccCcccccCCCCCeEEEEeCCHHHhcCCcCCCceeeCCHHHHHHHHHHhh
Confidence 45789999999999885322111000111137889999998876654 457889999999999998765
No 24
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=87.56 E-value=0.42 Score=49.89 Aligned_cols=67 Identities=18% Similarity=0.168 Sum_probs=49.3
Q ss_pred HHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 016198 317 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 317 a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~ 386 (393)
+.+.+.++|+||+||+.+...... + ... ..++++|.|+.++...+. ..++.|.+|+.++|.+|.+.+
T Consensus 265 ~~~~l~~aDlvl~iG~~~~~~~~~-~-~~~-~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l 333 (589)
T 2pgn_A 265 ANDMMAAADFVLVLGSRLSDWGIA-Q-GYI-TKMPKFVHVDTDPAVLGTFYFPLLSVVADAKTFMEQLIEVL 333 (589)
T ss_dssp HHHHHHHCSEEEEESCCCCTTTTT-T-TTT-CCCCSEEEEESCGGGTTSSSCCSEEEECCHHHHHHHHHHHG
T ss_pred HHHHHhhCCEEEEECCCccccccc-c-ccc-CCCCeEEEEeCCHHHHCCCcCCCEEEEeCHHHHHHHHHHHh
Confidence 445678899999999987543221 1 111 136789999998877655 468899999999999998765
No 25
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=86.97 E-value=0.74 Score=48.21 Aligned_cols=67 Identities=13% Similarity=0.185 Sum_probs=47.3
Q ss_pred HHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHh
Q 016198 317 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDV 385 (393)
Q Consensus 317 a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~ 385 (393)
+.+.+.++|+||+||+.+.-.....+ ... ..++++|.|+.++...+. ..++.|.+|+..+|..|++.
T Consensus 287 ~~~~l~~aDlvl~iG~~~~~~~~~~~-~~~-~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~ 355 (616)
T 2pan_A 287 GNATLLASDMVFGIGNRFANRHTGSV-EKY-TEGRKIVHIDIEPTQIGRVLCPDLGIVSDAKAALTLLVEV 355 (616)
T ss_dssp HHHHHHHCSEEEEESCCCCHHHHSSH-HHH-HTTCEEEEEESCGGGTTSSSCCSSCEECCHHHHHHHHHHH
T ss_pred HHHHHHhCCEEEEECCCCcccccCcc-ccc-CCCCeEEEEeCCHHHhCCCCCCCeEEEcCHHHHHHHHHHH
Confidence 44567899999999998863111111 111 136789999998866654 45678999999999998764
No 26
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=86.16 E-value=1.4 Score=45.95 Aligned_cols=67 Identities=13% Similarity=0.120 Sum_probs=49.9
Q ss_pred HHHHHHhhCCeEEEeccCcchhhH-HHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhCC
Q 016198 316 KAMEAAKECDAFLVLGSSLMTMSA-YRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 387 (393)
Q Consensus 316 ~a~~~~~~aDllLVvGTSl~V~p~-~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~~ 387 (393)
.+.+.++++|+||++|+.+..... ... . .++++|.|+.++...+. ..++.|.+|+.++|.+|.+.+.
T Consensus 262 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~---~--~~~~~i~id~d~~~~~~~~~~~~~i~gd~~~~l~~L~~~l~ 331 (590)
T 1v5e_A 262 PANETILEADTVLFAGSNFPFSEVEGTF---R--NVDNFIQIDIDPAMLGKRHHADVAILGDAALAIDEILNKVD 331 (590)
T ss_dssp HHHHHHHHCSEEEEESCCCTTTTTTTTT---T--TCSEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHSC
T ss_pred HHHHHHHhCCEEEEECCCCcchhccccC---C--CCCeEEEEeCCHHHHCCCcCCCeEEEcCHHHHHHHHHHhhc
Confidence 344567899999999998854431 000 1 26789999998876654 4678999999999999988764
No 27
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=84.86 E-value=0.84 Score=47.15 Aligned_cols=66 Identities=12% Similarity=0.150 Sum_probs=47.1
Q ss_pred HHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 016198 319 EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 319 ~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~ 386 (393)
+.++++|+||++|+.+.-...... ... ..++++|.|+.++...+. ..++.|.+|+.++|.+|.+.+
T Consensus 266 ~~l~~aDlvl~iG~~~~~~~~~~~-~~~-~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l 333 (564)
T 2q28_A 266 FALANADVVMLVGARLNWLLAHGK-KGW-AADTQFIQLDIEPQEIDSNRPIAVPVVGDIASSMQGMLAEL 333 (564)
T ss_dssp HHHHHCSEEEEESCCCSGGGGGGT-TTS-CTTCEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHH
T ss_pred hHhhcCCEEEEECCcccccccccc-ccc-CCCCeEEEEeCCHHHhcCCCCCCeEEEcCHHHHHHHHHHHh
Confidence 457899999999998853211110 111 136889999998876654 467889999999999997754
No 28
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*
Probab=82.67 E-value=2.5 Score=41.09 Aligned_cols=58 Identities=17% Similarity=0.139 Sum_probs=47.4
Q ss_pred CCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCC-CCCCcccEEEECcHHHHHHHHHHhC
Q 016198 324 CDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGET-RADDLTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 324 aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t-~~d~~~~l~I~~d~~~vL~~L~~~~ 386 (393)
|+|.|-+|.|-.++=...| +.-..+|-||.++. ++=+.+|+-|-+|+-++||+|.+.+
T Consensus 260 ~~lYiA~GISGAiQHlaGm-----~~s~~IVAIN~D~~ApIF~~ADygiVgDl~~vvP~L~~~l 318 (320)
T 1o97_D 260 CKLYVAMGISGSIQHMAGM-----KHVPTIIAVNTDPGASIFTIAKYGIVADIFDIEEELKAQL 318 (320)
T ss_dssp CSEEEEESCCCCHHHHHHH-----TTCSEEEEECSCTTCGGGGTCSEEECSCHHHHHHHHHHHC
T ss_pred cceEEEEeccCcHHHHhhc-----ccCCEEEEEeCCCCCCcccccCeEEeeeHHHHHHHHHHHH
Confidence 4999999999998766555 22345788999874 5667899999999999999999876
No 29
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=82.32 E-value=1.7 Score=46.26 Aligned_cols=69 Identities=13% Similarity=0.159 Sum_probs=47.2
Q ss_pred HHHhhCCeEEEeccCcch---hhHHHHHHHHH----hCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhCC
Q 016198 319 EAAKECDAFLVLGSSLMT---MSAYRLVRAAH----EAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVGS 387 (393)
Q Consensus 319 ~~~~~aDllLVvGTSl~V---~p~~~lv~~a~----~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~~ 387 (393)
+.++++|+||.||+.+.- .....+...++ +....+|.|+.++...+. ..++.|.+|+..+|.+|++.+.
T Consensus 352 ~~l~~aDlvl~iG~r~~~~~t~~~~~~~~~~~~~~~~~~~~iI~idid~~~~~~~~~~~~~i~gD~~~~l~~L~~~l~ 429 (677)
T 1t9b_A 352 LAVQNADLIIAVGARFDDRVTGNISKFAPEARRAAAEGRGGIIHFEVSPKNINKVVQTQIAVEGDATTNLGKMMSKIF 429 (677)
T ss_dssp HHHHHCSEEEEESCCCCTTTSCSGGGSSHHHHHHHHTTSCEEEEEESCGGGSSSSSCCSEEEESCHHHHHHHHHTTSC
T ss_pred HHHhcCCEEEEECCccCcccccCccccCcccccccccCCceEEEEECCHHHhCCcccCCEEEeCCHHHHHHHHHHHhh
Confidence 457899999999998752 11111111121 223448889988776654 4678999999999999988663
No 30
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=80.59 E-value=0.62 Score=40.59 Aligned_cols=12 Identities=42% Similarity=1.071 Sum_probs=9.8
Q ss_pred eeecCCCCcccc
Q 016198 231 TVVCLDCGFSFC 242 (393)
Q Consensus 231 ~~~C~~C~~~~~ 242 (393)
..+|..|++.|.
T Consensus 132 ~y~C~~Cg~~~~ 143 (165)
T 2lcq_A 132 RYVCIGCGRKFS 143 (165)
T ss_dssp CEEESSSCCEES
T ss_pred EEECCCCCCccc
Confidence 579999998764
No 31
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=79.69 E-value=0.64 Score=41.80 Aligned_cols=14 Identities=21% Similarity=0.579 Sum_probs=11.3
Q ss_pred cceeecCCCCcccc
Q 016198 229 VYTVVCLDCGFSFC 242 (393)
Q Consensus 229 ~~~~~C~~C~~~~~ 242 (393)
...++|..||+.+.
T Consensus 153 ~~~~~C~~CG~~~~ 166 (191)
T 1lko_A 153 ATKWRCRNCGYVHE 166 (191)
T ss_dssp EEEEEETTTCCEEE
T ss_pred CceEEECCCCCEee
Confidence 34689999999875
No 32
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=79.27 E-value=0.69 Score=47.83 Aligned_cols=65 Identities=14% Similarity=0.101 Sum_probs=47.6
Q ss_pred HhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHhC
Q 016198 321 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD--LTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 321 ~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~--~~~l~I~~d~~~vL~~L~~~~ 386 (393)
+.++|++|.+|+.+.......+-. ....++++|.|+.++...+. ..++.|.+|+.++|.+|.+.+
T Consensus 267 ~~~aDlvl~iG~~~~~~~~~~~~~-~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l 333 (563)
T 2uz1_A 267 DAAPDLVLMLGARFGLNTGHGSGQ-LIPHSAQVIQVDPDACELGRLQGIALGIVADVGGTIEALAQAT 333 (563)
T ss_dssp TCCCSEEEEESCCSSGGGTTTSCS-SSCTTSEEEEECSCGGGTTSSSCCSEEECSCHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCcccccccccc-cCCCCCeEEEEECCHHHhCCCCCCCeEEEcCHHHHHHHHHHhh
Confidence 578999999999876543211110 11116789999999877655 568899999999999998755
No 33
>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A*
Probab=75.55 E-value=3.9 Score=43.89 Aligned_cols=53 Identities=9% Similarity=0.117 Sum_probs=42.5
Q ss_pred HhhCCeEEEeccCcch-h--hHHHHHHHHHhCCCeEEEECCCCCCCCCcccEEEEC
Q 016198 321 AKECDAFLVLGSSLMT-M--SAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISA 373 (393)
Q Consensus 321 ~~~aDllLVvGTSl~V-~--p~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~~ 373 (393)
++++|++|++|+.... . .....+..++++|+++|.|++..+.....+|..|.-
T Consensus 197 ~~~ad~il~~G~n~~~~~p~~~~~~~~~a~~~G~klividPr~t~ta~~Ad~~l~i 252 (765)
T 2vpz_A 197 WENARYIVLIGHHIGEDTHNTQLQDFALALKNGAKVVVVDPRFSTAAAKAHRWLPI 252 (765)
T ss_dssp GGGCSEEEEESCCBTTBCCHHHHHHHHHHHHTTCEEEEECSBCCTTGGGCSEEECC
T ss_pred cccCCEEEEEeCChhhcCChHHHHHHHHHHHCCCEEEEECCCCCcchhhCCeEeCC
Confidence 5799999999986654 3 355666678888999999999998888888888653
No 34
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=74.56 E-value=0.79 Score=46.96 Aligned_cols=71 Identities=15% Similarity=0.210 Sum_probs=49.0
Q ss_pred HHHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCC-cccEEEECcHHHHHHHHHHhCC
Q 016198 316 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADD-LTTLKISARLGEILPRVLDVGS 387 (393)
Q Consensus 316 ~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~-~~~l~I~~d~~~vL~~L~~~~~ 387 (393)
.+.+.++++|++|++|+.+.......+.... ..++++|.|+.++...+. ..++.|.+|+.++|.+|.+.+.
T Consensus 259 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~-~~~~~~i~id~d~~~~~~~~~~~~i~~d~~~~l~~L~~~~~ 330 (528)
T 1q6z_A 259 AISQLLEGHDVVLVIGAPVFRYHQYDPGQYL-KPGTRLISVTCDPLEAARAPMGDAIVADIGAMASALANLVE 330 (528)
T ss_dssp HHHHHHTTCSEEEEESSCTTCCCSCCCSCSS-CTTCEEEEEESCHHHHHHCSSSEEEESCHHHHHHHHHHHSC
T ss_pred HHHHHHhcCCEEEEECCCCccccccCcCCcC-CCCCeEEEEeCCHHHhCCCCCCeeEeCCHHHHHHHHHHHhh
Confidence 3455688999999999987543321111001 136789999988744321 5678899999999999988653
No 35
>2ivf_A Ethylbenzene dehydrogenase alpha-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=69.30 E-value=4.3 Score=44.94 Aligned_cols=52 Identities=12% Similarity=0.211 Sum_probs=41.5
Q ss_pred HhhCCeEEEeccCcch--hhHHHHHHHHHhCCCeEEEECCCCCCCCCcccEEEE
Q 016198 321 AKECDAFLVLGSSLMT--MSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKIS 372 (393)
Q Consensus 321 ~~~aDllLVvGTSl~V--~p~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~ 372 (393)
+.++|++|++|+.... .+....+..++++|+++|.|++..+.....+|..|.
T Consensus 244 ~~nad~Il~~G~N~~~~~p~~~~~~~~ar~~GakvivVDPr~t~ta~~AD~wl~ 297 (976)
T 2ivf_A 244 LLDAELIFMTCSNWSYTYPSSYHFLSEARYKGAEVVVIAPDFNPTTPAADLHVP 297 (976)
T ss_dssp GGGCSEEEEESCCHHHHCTTTHHHHHHHHHHTCEEEEECSSCCTTGGGCSEEEC
T ss_pred HhhCcEEEEeCCChhHcccHHHHHHHHHHHcCCEEEEECCCCCcchhhcCeEec
Confidence 5789999999987644 344566667888899999999998887778888764
No 36
>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: b.52.2.2 c.81.1.1
Probab=68.94 E-value=5.8 Score=43.98 Aligned_cols=52 Identities=25% Similarity=0.353 Sum_probs=40.8
Q ss_pred HhhCCeEEEeccCcch-hh-HHHHHHHHHhCCCeEEEECCCCCCCCCcccEEEE
Q 016198 321 AKECDAFLVLGSSLMT-MS-AYRLVRAAHEAGSTIAIVNVGETRADDLTTLKIS 372 (393)
Q Consensus 321 ~~~aDllLVvGTSl~V-~p-~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~ 372 (393)
+.++|++|++|+.... .| ....+..++++|+++|.|++..|.....+|+.|.
T Consensus 182 ~~~ad~il~~G~N~~~~~p~~~~~~~~a~~~G~klivIDPr~t~ta~~AD~~l~ 235 (977)
T 1h0h_A 182 LKNSDVILMMGSNPAENHPISFKWVMRAKDKGATLIHVDPRYTRTSTKCDLYAP 235 (977)
T ss_dssp GGGCSEEEEESCCHHHHSTTHHHHHHHHHHTTCEEEEECSSCCTTGGGCSEEEC
T ss_pred HhhCCEEEEECCChHHhCcHHHHHHHHHHHCCCeEEEECCCCCchhHHhCeeec
Confidence 6789999999987654 33 3445566778899999999999888788887755
No 37
>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Probab=68.00 E-value=6.8 Score=37.86 Aligned_cols=60 Identities=15% Similarity=0.193 Sum_probs=47.1
Q ss_pred hCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCC-CCCCcccEEEECcHHHHHHHHHHhCC
Q 016198 323 ECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGET-RADDLTTLKISARLGEILPRVLDVGS 387 (393)
Q Consensus 323 ~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t-~~d~~~~l~I~~d~~~vL~~L~~~~~ 387 (393)
..+|.|-+|.|-.++=...| +.-..+|-||.++. ++=+.+|+-|-+|+-++||+|.+.+.
T Consensus 253 ~P~lYiA~GISGAiQHlaGm-----~~s~~IVAIN~D~~ApIf~~ADygiVgDl~~v~P~L~~~l~ 313 (315)
T 1efv_A 253 APELYIAVGISGAIQHLAGM-----KDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEILK 313 (315)
T ss_dssp CCSEEEEESCCCCHHHHTTT-----TTCSEEEEEESCTTCGGGGTCSEEEESCHHHHHHHHHHHTC
T ss_pred CcceEEEecccCcHHHHhhc-----ccCCEEEEEeCCCCCCcchhcCeEEeeeHHHHHHHHHHHHh
Confidence 55799999999988644443 22345788999874 56678999999999999999998764
No 38
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=67.17 E-value=2.5 Score=34.90 Aligned_cols=20 Identities=25% Similarity=0.561 Sum_probs=14.5
Q ss_pred eeeecccceeecCCCCcccc
Q 016198 223 LELHGTVYTVVCLDCGFSFC 242 (393)
Q Consensus 223 ielHGs~~~~~C~~C~~~~~ 242 (393)
+++.---..++|.+|++.+.
T Consensus 65 L~i~~~p~~~~C~~CG~~~e 84 (119)
T 2kdx_A 65 LDIVDEKVELECKDCSHVFK 84 (119)
T ss_dssp EEEEEECCEEECSSSSCEEC
T ss_pred EEEEeccceEEcCCCCCEEe
Confidence 55555555789999998764
No 39
>1efp_A ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 c.31.1.2
Probab=66.75 E-value=7.1 Score=37.57 Aligned_cols=59 Identities=12% Similarity=0.141 Sum_probs=46.0
Q ss_pred hCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCC-CCCCcccEEEECcHHHHHHHHHHhC
Q 016198 323 ECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGET-RADDLTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 323 ~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t-~~d~~~~l~I~~d~~~vL~~L~~~~ 386 (393)
..+|.|-+|.|-.++=...| +.-..+|-||.++. ++=+.+|+-|-+|+-++||+|.+.+
T Consensus 248 ~P~lYiA~GISGAiQHlaGm-----~~s~~IVAIN~D~~ApIF~~ADygiVgDl~~v~P~L~~~l 307 (307)
T 1efp_A 248 APELYVAVGISGAIQHLAGM-----KDSKVIVAINKDEEAPIFQIADYGLVGDLFSVVPELTGKL 307 (307)
T ss_dssp CCSEEEEESCCCCHHHHTTT-----TTCSEEEEEESCTTCGGGGTCSEEEESCHHHHHHHHHHTC
T ss_pred CCceEEEEeccCcHHHHhhh-----ccCCEEEEEeCCCCCCcccccCeEEeeeHHHHHHHHHhhC
Confidence 55799999999988644443 22345788999874 5567899999999999999998754
No 40
>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus}
Probab=66.72 E-value=3.3 Score=44.07 Aligned_cols=52 Identities=13% Similarity=0.342 Sum_probs=40.6
Q ss_pred HhhCCeEEEeccCcch-hh--HHHHHHHHHhCCCeEEEECCCCCCCCCcccEEEE
Q 016198 321 AKECDAFLVLGSSLMT-MS--AYRLVRAAHEAGSTIAIVNVGETRADDLTTLKIS 372 (393)
Q Consensus 321 ~~~aDllLVvGTSl~V-~p--~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~ 372 (393)
++++|++|++|+.... .| ....+..++++|+++|.|++..+.....+|..|.
T Consensus 158 ~~~ad~il~~G~n~~~~~p~~~~~~l~~a~~~G~klividPr~t~ta~~Ad~~l~ 212 (727)
T 2e7z_A 158 FADSNCLLFIGKNLSNHNWVSQFNDLKAALKRGCKLIVLDPRRTKVAEMADIWLP 212 (727)
T ss_dssp TTTCSEEEEESCCCBTTBSHHHHHHHHHHHHHTCEEEEECSSCCHHHHHCSEEEC
T ss_pred cccCCEEEEECCChhhcCCHHHHHHHHHHHHCCCeEEEECCCCCcchhhcceeec
Confidence 5799999999987654 33 4556667778899999999988877667777764
No 41
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=66.26 E-value=2.4 Score=36.19 Aligned_cols=22 Identities=14% Similarity=0.419 Sum_probs=16.6
Q ss_pred eeeecccceeecCCCCcccchh
Q 016198 223 LELHGTVYTVVCLDCGFSFCRD 244 (393)
Q Consensus 223 ielHGs~~~~~C~~C~~~~~~~ 244 (393)
+++.---..++|.+||+.+...
T Consensus 62 L~i~~~p~~~~C~~CG~~~~~~ 83 (139)
T 3a43_A 62 IEFVEEEAVFKCRNCNYEWKLK 83 (139)
T ss_dssp EEEEEECCEEEETTTCCEEEGG
T ss_pred EEEEecCCcEECCCCCCEEecc
Confidence 5666666688999999987644
No 42
>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A* 1fdo_A* 1aa6_A*
Probab=65.92 E-value=4.2 Score=43.17 Aligned_cols=53 Identities=15% Similarity=0.241 Sum_probs=39.8
Q ss_pred HhhCCeEEEeccCcch-hh-HHHHHHHHHhCCCeEEEECCCCCCCCCcccEEEEC
Q 016198 321 AKECDAFLVLGSSLMT-MS-AYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISA 373 (393)
Q Consensus 321 ~~~aDllLVvGTSl~V-~p-~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~~ 373 (393)
++++|++|++|+.... .| ....+..++++|+++|.|++..+.....+|..|.-
T Consensus 164 i~~ad~il~~G~n~~~~~p~~~~~l~~a~~~G~klividPr~t~ta~~Ad~~l~i 218 (715)
T 2iv2_X 164 IDNTDLVFVFGYNPADSHPIVANHVINAKRNGAKIIVCDPRKIETARIADMHIAL 218 (715)
T ss_dssp GGGCSEEEEESCCHHHHCHHHHHHHHHHHHTTCEEEEECSSCCHHHHTCSEEECC
T ss_pred HhcCCEEEEEcCChHHhCHHHHHHHHHHHHCCCeEEEEcCCCCchhHhhCEEecc
Confidence 5789999999987654 23 33445567788999999999888766677777553
No 43
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=64.88 E-value=2.5 Score=43.66 Aligned_cols=66 Identities=17% Similarity=0.139 Sum_probs=44.1
Q ss_pred HHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCCcccEEEECcHHHHHHHHHHhCC
Q 016198 318 MEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGS 387 (393)
Q Consensus 318 ~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~~d~~~vL~~L~~~~~ 387 (393)
.+.++++|+||++|+.+.-.....+... ..+.++|.|+.++...+. ......++.++|.+|.+.+.
T Consensus 271 ~~~l~~aDlvl~iG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~--~~~~~~~~~~~l~~L~~~l~ 336 (568)
T 2wvg_A 271 EKTMKEADAVIALAPVFNDYSTTGWTDI--PDPKKLVLAEPRSVVVNG--IRFPSVHLKDYLTRLAQKVS 336 (568)
T ss_dssp HHHHHHCSEEEEESCCCBTTTTTTTTCC--CCTTTEEEECSSEEEETT--EEEESCCHHHHHHHHHHHCC
T ss_pred HHHHHhCCEEEEECCCcccccccccccC--CCCCcEEEEeCChhhcCC--eecCCCCHHHHHHHHHHhcc
Confidence 3457889999999998754332222111 136789999998876543 34455668899999887653
No 44
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=64.83 E-value=3 Score=37.81 Aligned_cols=14 Identities=21% Similarity=0.394 Sum_probs=11.3
Q ss_pred cceeecCCCCcccc
Q 016198 229 VYTVVCLDCGFSFC 242 (393)
Q Consensus 229 ~~~~~C~~C~~~~~ 242 (393)
...++|..||+.|.
T Consensus 169 ~~~~~C~~CG~i~~ 182 (202)
T 1yuz_A 169 DKFHLCPICGYIHK 182 (202)
T ss_dssp CCEEECSSSCCEEE
T ss_pred CcEEEECCCCCEEc
Confidence 45789999998764
No 45
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=64.79 E-value=2.6 Score=43.54 Aligned_cols=67 Identities=13% Similarity=0.148 Sum_probs=45.0
Q ss_pred HHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCCcccEEEECcHHHHHHHHHHhCC
Q 016198 317 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVGS 387 (393)
Q Consensus 317 a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~~d~~~vL~~L~~~~~ 387 (393)
+.+.++++|+||++|+.+.......+... ..++++|.|+.++...+. .....-++.++|..|.+.+.
T Consensus 270 ~~~~l~~aDlvl~iG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~--~~~~~~~~~~~l~~L~~~l~ 336 (566)
T 2vbi_A 270 VQELVETSDALLCIAPVFNDYSTVGWSAW--PKGPNVILAEPDRVTVDG--RAYDGFTLRAFLQALAEKAP 336 (566)
T ss_dssp HHHHHHTCSEEEEESCCCBTTTTTTTTSC--CCSTTEEEECSSEEEETT--EEEESSCHHHHHHHHHHHCC
T ss_pred HHHHHHhCCEEEEECCCcccccccccccc--CCCCcEEEEeCChheeCC--cccCCccHHHHHHHHHHhcc
Confidence 34457899999999998865433222111 136789999998866553 34455568899999887653
No 46
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=64.41 E-value=2.1 Score=44.13 Aligned_cols=66 Identities=14% Similarity=0.170 Sum_probs=42.9
Q ss_pred HHHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCCcccEEEECcHHHHHHHHHHh
Q 016198 316 KAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDV 385 (393)
Q Consensus 316 ~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~~d~~~vL~~L~~~ 385 (393)
.+.+.++++|+||++|+.+.......+... ..+.++|.||.++...+.. .....++.++|.+|.+.
T Consensus 271 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~--~~~~~~~~~~l~~L~~~ 336 (563)
T 2vk8_A 271 EVKEAVESADLILSVGALLSDFNTGSFSYS--YKTKNIVEFHSDHMKIRNA--TFPGVQMKFVLQKLLTT 336 (563)
T ss_dssp HHHHHHHTCSEEEEESCCCCTTTTTTTCCC--CCCSCEEEECSSEEEETTE--EEETCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEECCCCccccccccccC--CCCCeEEEEeCCceEECCc--ccCCcCHHHHHHHHHHh
Confidence 344567899999999998854332221111 1267899999987665543 33445678888888753
No 47
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=64.33 E-value=14 Score=32.63 Aligned_cols=54 Identities=15% Similarity=0.184 Sum_probs=42.9
Q ss_pred HHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEEC-CCCCCCCCcc---cEEEEC
Q 016198 320 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVN-VGETRADDLT---TLKISA 373 (393)
Q Consensus 320 ~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN-~~~t~~d~~~---~l~I~~ 373 (393)
.+.+-|++|++-.|-.+.-....++.++++|+++|.|- ....+..+.+ |+.|.-
T Consensus 111 ~~~~~Dvvi~iS~SG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~la~~a~~~d~~l~~ 168 (201)
T 3trj_A 111 LGNEDDILLVITTSGDSENILSAVEEAHDLEMKVIALTGGSGGALQNMYNTDDIELRV 168 (201)
T ss_dssp HCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEETTCCGGGGTCCTTCEEEEE
T ss_pred hCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCHHHHhhccCCEEEEe
Confidence 46789999999999999889999999999999987773 4455566666 776553
No 48
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=64.25 E-value=3.1 Score=36.73 Aligned_cols=13 Identities=23% Similarity=0.710 Sum_probs=10.4
Q ss_pred ceeecCCCCcccc
Q 016198 230 YTVVCLDCGFSFC 242 (393)
Q Consensus 230 ~~~~C~~C~~~~~ 242 (393)
..++|..||+.+.
T Consensus 137 ~~~~C~~CG~i~~ 149 (170)
T 3pwf_A 137 KVYICPICGYTAV 149 (170)
T ss_dssp CEEECTTTCCEEE
T ss_pred CeeEeCCCCCeeC
Confidence 3678999998764
No 49
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=63.80 E-value=9.7 Score=27.06 Aligned_cols=13 Identities=31% Similarity=0.807 Sum_probs=10.9
Q ss_pred ceeecCCCCcccc
Q 016198 230 YTVVCLDCGFSFC 242 (393)
Q Consensus 230 ~~~~C~~C~~~~~ 242 (393)
...+|..|++.|+
T Consensus 2 ~~y~C~~CGyvYd 14 (52)
T 1e8j_A 2 DIYVCTVCGYEYD 14 (52)
T ss_dssp CCEECSSSCCCCC
T ss_pred CcEEeCCCCeEEc
Confidence 4679999999886
No 50
>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor, dissimilatory nitrate reductase; HET: MGD MES; 1.90A {Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1 PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A* 2jio_A*
Probab=63.37 E-value=7.1 Score=41.39 Aligned_cols=54 Identities=15% Similarity=0.386 Sum_probs=40.2
Q ss_pred HhhCCeEEEeccCcch-hh-HHHHHHHHHhC--CCeEEEECCCCCCCCCcccEEEECc
Q 016198 321 AKECDAFLVLGSSLMT-MS-AYRLVRAAHEA--GSTIAIVNVGETRADDLTTLKISAR 374 (393)
Q Consensus 321 ~~~aDllLVvGTSl~V-~p-~~~lv~~a~~~--ga~li~IN~~~t~~d~~~~l~I~~d 374 (393)
++++|++|++|+.... .| ....+..++++ |+++|.|++..+.....+|..|.-+
T Consensus 164 ~~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~~g~klividP~~t~ta~~Ad~~l~ir 221 (723)
T 2nap_A 164 IDQATCFFIIGSNTSEAHPVLFRRIARRKQVEPGVKIIVADPRRTNTSRIADMHVAFR 221 (723)
T ss_dssp GGTCSEEEEESCCHHHHSHHHHHHHHHHHHHCTTCEEEEECSBCCGGGGGCSEEECCC
T ss_pred HhHCCEEEEEcCChhHhCcHHHHHHHHHHhhCCCCEEEEEcCcCCchhhhhCeeeecC
Confidence 5799999999987654 23 23344556666 9999999999888777888776543
No 51
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=61.07 E-value=8.6 Score=29.98 Aligned_cols=15 Identities=27% Similarity=0.809 Sum_probs=12.5
Q ss_pred cceeecCCCCcccch
Q 016198 229 VYTVVCLDCGFSFCR 243 (393)
Q Consensus 229 ~~~~~C~~C~~~~~~ 243 (393)
....+|..|++.|+.
T Consensus 25 m~~y~C~vCGyvYD~ 39 (81)
T 2kn9_A 25 YKLFRCIQCGFEYDE 39 (81)
T ss_dssp CCEEEETTTCCEEET
T ss_pred cceEEeCCCCEEEcC
Confidence 567899999998864
No 52
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=59.97 E-value=11 Score=40.81 Aligned_cols=55 Identities=15% Similarity=0.056 Sum_probs=39.1
Q ss_pred HHHhhCCeEEEeccCcch-hhH-HHHHHHHH-------------------------hCCCeEEEECCCCCCCCCcccEEE
Q 016198 319 EAAKECDAFLVLGSSLMT-MSA-YRLVRAAH-------------------------EAGSTIAIVNVGETRADDLTTLKI 371 (393)
Q Consensus 319 ~~~~~aDllLVvGTSl~V-~p~-~~lv~~a~-------------------------~~ga~li~IN~~~t~~d~~~~l~I 371 (393)
..++++|++|++| .... .|. ...++.+. ++|+++|.|++..+.....++..+
T Consensus 388 ~di~~ad~Il~~G-Np~~~~P~~~~rlr~a~~~~~~~~~~~~g~~~~~~~v~~~~~~~g~klividPr~t~ta~~Ad~~l 466 (783)
T 3i9v_3 388 EDLLQADFALVLG-DPTEEAPILHLRLSEFVRDLKPPHRYNHGTPFADLQIKERMPRRTDKMALFAPYRAPLMKWAAIHE 466 (783)
T ss_dssp HHHHHCSCEEEES-CHHHHSTHHHHHHHHHHTTCCCCCCBTTBSCSSCTTCCTTCCCCTTSEEEEESSCCGGGTTCSEEE
T ss_pred HHHhhCCEEEEeC-ChhHhCcHHHHHHHHHHHhcccchhhcccccchhhhhhhhhhcCCCEEEEEeCCcchhhHhhcceE
Confidence 4567999999999 6543 443 22233332 568999999999998888888776
Q ss_pred ECc
Q 016198 372 SAR 374 (393)
Q Consensus 372 ~~d 374 (393)
.-.
T Consensus 467 ~i~ 469 (783)
T 3i9v_3 467 VHR 469 (783)
T ss_dssp ECC
T ss_pred ecC
Confidence 543
No 53
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=59.82 E-value=8.2 Score=27.77 Aligned_cols=14 Identities=29% Similarity=0.719 Sum_probs=11.3
Q ss_pred ceeecCCCCcccch
Q 016198 230 YTVVCLDCGFSFCR 243 (393)
Q Consensus 230 ~~~~C~~C~~~~~~ 243 (393)
...+|..|++.|+.
T Consensus 2 ~~y~C~~CGyvYd~ 15 (55)
T 2v3b_B 2 RKWQCVVCGFIYDE 15 (55)
T ss_dssp CEEEETTTCCEEET
T ss_pred CcEEeCCCCeEECC
Confidence 46799999998863
No 54
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=59.32 E-value=2 Score=44.37 Aligned_cols=66 Identities=12% Similarity=0.123 Sum_probs=42.8
Q ss_pred HHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCCcccEEEECcHHHHHHHHHHhC
Q 016198 317 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 317 a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~~d~~~vL~~L~~~~ 386 (393)
+.+.++++|+||+||+.+.-.....+... ..+.++|.|+.++...+.. .....++.++|.+|.+.+
T Consensus 289 ~~~~l~~aDlvl~iG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~--~~~~~~~~~~l~~L~~~l 354 (570)
T 2vbf_A 289 LKNFVESADFILMLGVKLTDSSTGAFTHH--LDENKMISLNIDEGIIFNK--VVEDFDFRAVVSSLSELK 354 (570)
T ss_dssp HHHHHHHCSEEEEESCCCCGGGTTTTCCC--CCGGGEEEECSSCEEETTE--EECSSCHHHHHHTGGGCC
T ss_pred HHHHHHhCCEEEEECCCcccccccccccC--CCCCeEEEEeCCHHHhCCe--eecCCCHHHHHHHHHHhc
Confidence 44567889999999998854433222111 1246799999887655442 334557888888887654
No 55
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=59.11 E-value=8.5 Score=30.43 Aligned_cols=15 Identities=20% Similarity=0.718 Sum_probs=12.4
Q ss_pred cceeecCCCCcccch
Q 016198 229 VYTVVCLDCGFSFCR 243 (393)
Q Consensus 229 ~~~~~C~~C~~~~~~ 243 (393)
...++|..|++.|+.
T Consensus 33 m~~y~C~vCGyvYD~ 47 (87)
T 1s24_A 33 YLKWICITCGHIYDE 47 (87)
T ss_dssp CCEEEETTTTEEEET
T ss_pred CceEECCCCCeEecC
Confidence 557899999998863
No 56
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=58.97 E-value=6.2 Score=29.87 Aligned_cols=11 Identities=18% Similarity=0.797 Sum_probs=8.6
Q ss_pred eeecCCCCccc
Q 016198 231 TVVCLDCGFSF 241 (393)
Q Consensus 231 ~~~C~~C~~~~ 241 (393)
...|.+|+..+
T Consensus 28 ~Y~C~~CG~~~ 38 (70)
T 1twf_L 28 KYICAECSSKL 38 (70)
T ss_dssp CEECSSSCCEE
T ss_pred EEECCCCCCcc
Confidence 45899999764
No 57
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=57.85 E-value=20 Score=34.96 Aligned_cols=74 Identities=18% Similarity=0.349 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCC----CCCCcccEEEECcH-------HHHHH
Q 016198 312 DRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGET----RADDLTTLKISARL-------GEILP 380 (393)
Q Consensus 312 ~~~~~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t----~~d~~~~l~I~~d~-------~~vL~ 380 (393)
.|.+++.+...++|++||||..-... -.+|.+-+.+.|.+.+.|.-..- -+.....+-|.+.+ .+|+.
T Consensus 214 ~RQ~av~~lA~~vD~miVVGg~nSSN-T~rL~eia~~~g~~ty~Ie~~~el~~~wl~g~~~VGITAGASTP~~lieeVi~ 292 (328)
T 3szu_A 214 NRQEAVRALAEQAEVVLVVGSKNSSN-SNRLAELAQRMGKRAFLIDDAKDIQEEWVKEVKCVGVTAGASAPDILVQNVVA 292 (328)
T ss_dssp HHHHHHHHHHHHCSEEEEECCTTCHH-HHHHHHHHHHTTCEEEEESSGGGCCHHHHTTCSEEEEEECTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCEEEEeCCCCCch-HHHHHHHHHHhCCCEEEeCChHHCCHHHhCCCCEEEEeecCCCCHHHHHHHHH
Confidence 56778888889999999999744322 25777778888989899885431 12334456677664 45666
Q ss_pred HHHHhC
Q 016198 381 RVLDVG 386 (393)
Q Consensus 381 ~L~~~~ 386 (393)
.|.+.+
T Consensus 293 ~l~~~~ 298 (328)
T 3szu_A 293 RLQQLG 298 (328)
T ss_dssp HHHHTT
T ss_pred HHHHhC
Confidence 665543
No 58
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=57.77 E-value=12 Score=28.29 Aligned_cols=16 Identities=19% Similarity=0.463 Sum_probs=12.7
Q ss_pred ccceeecCCCCcccch
Q 016198 228 TVYTVVCLDCGFSFCR 243 (393)
Q Consensus 228 s~~~~~C~~C~~~~~~ 243 (393)
.....+|..|++.|+.
T Consensus 4 ~m~~y~C~vCGyiYd~ 19 (70)
T 1dx8_A 4 DEGKYECEACGYIYEP 19 (70)
T ss_dssp CSSCEEETTTCCEECT
T ss_pred CCceEEeCCCCEEEcC
Confidence 4567899999998863
No 59
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=57.29 E-value=3.8 Score=41.97 Aligned_cols=64 Identities=13% Similarity=0.185 Sum_probs=41.5
Q ss_pred HHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCCcccEEEECcHHHHHHHHHH
Q 016198 317 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLD 384 (393)
Q Consensus 317 a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~~d~~~vL~~L~~ 384 (393)
+.+.++++|+||++|+.+.......+... ..+.++|.|+.++...+.. .....++.++|..|.+
T Consensus 270 ~~~~l~~aD~vl~iG~~~~~~~~~~~~~~--~~~~~~i~id~d~~~~~~~--~~~~~~~~~~l~~L~~ 333 (552)
T 1ovm_A 270 VKEAIEGADTVLCVGTRFTDTLTAGFTHQ--LTPAQTIEVQPHAARVGDV--WFTGIPMNQAIETLVE 333 (552)
T ss_dssp HHHHHHTSSEEEEESCCCCTTTTTTTCCC--CCTTTEEEECSSEEEETTE--EEESCCHHHHHHHHHH
T ss_pred HHHHHHhCCEEEEECCCCCcccccccccC--CCCCeEEEEeCChheeCCc--ccCCccHHHHHHHHHh
Confidence 44567899999999998865433222111 1256899999887655442 2334556888888865
No 60
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=57.10 E-value=21 Score=31.57 Aligned_cols=57 Identities=16% Similarity=0.226 Sum_probs=44.1
Q ss_pred HHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEE-CCCCCCCCCcccEEEECcH
Q 016198 319 EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKISARL 375 (393)
Q Consensus 319 ~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~I-N~~~t~~d~~~~l~I~~d~ 375 (393)
..+++-|++|++-.|-.+.-..+.++.++++|+++|.| |....++.+.+|+.|.-..
T Consensus 127 ~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~G~~vIaIT~~~~s~La~~aD~~l~~~~ 184 (212)
T 2i2w_A 127 AVGREGDVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEIRVPH 184 (212)
T ss_dssp HHCCTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEEETTCGGGTTCSSEEEEECC
T ss_pred hcCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEcCC
Confidence 35678899999999888888889999999999987666 3444666677787765444
No 61
>1eu1_A Dimethyl sulfoxide reductase; molybdenum, molybdenum cofactor, DMSO, molybdopte oxidoreductase; HET: GLC MGD EPE; 1.30A {Rhodobacter sphaeroides} SCOP: b.52.2.2 c.81.1.1 PDB: 4dmr_A* 1dmr_A* 1e5v_A* 1h5n_A* 2dmr_A* 3dmr_A* 1e61_A* 1e60_A* 1e18_A* 1dms_A*
Probab=56.07 E-value=6.2 Score=42.36 Aligned_cols=53 Identities=21% Similarity=0.269 Sum_probs=39.0
Q ss_pred HHhhCCeEEEeccCcch-h---------hHHHHHHHHHhCCCeEEEECCCCCCCCCcc-cEEEE
Q 016198 320 AAKECDAFLVLGSSLMT-M---------SAYRLVRAAHEAGSTIAIVNVGETRADDLT-TLKIS 372 (393)
Q Consensus 320 ~~~~aDllLVvGTSl~V-~---------p~~~lv~~a~~~ga~li~IN~~~t~~d~~~-~l~I~ 372 (393)
.++++|++|++|+.... . .....+..++++|+++|.|++..+.....+ |..|.
T Consensus 174 d~~~ad~il~~G~N~~~~~~~~~~~~~~~~~~~l~~a~~~G~klivIDPr~t~ta~~aad~~l~ 237 (780)
T 1eu1_A 174 VVENTDLMVFWAADPMKTNEIGWVIPDHGAYAGMKALKEKGTRVIAINPVRTETADYFGADVVS 237 (780)
T ss_dssp HHHHCSEEEEESCCHHHHTTCCSSBCCCHHHHHHHHHHHHTCEEEEESSBCCHHHHHHTCEEEC
T ss_pred HHhhCCEEEEECCCHHHhcCCCCcccccchHHHHHHHHHCCCeEEEECCCCCCcccccCCEEee
Confidence 46799999999987643 2 234555667778999999999887765554 66655
No 62
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=55.87 E-value=6.6 Score=34.03 Aligned_cols=25 Identities=4% Similarity=0.078 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHcCCcEEEEeCCCcC
Q 016198 110 EDINQLYQFFDNSAKLIVLTGAGIS 134 (393)
Q Consensus 110 ~~l~~l~~~i~~ak~IVVlTGAGIS 134 (393)
.++++++++|++|++-||+.|.|+.
T Consensus 22 ~~v~~aa~~L~~AkrPvil~G~g~~ 46 (170)
T 3cf4_G 22 VSPEMAAKIISKAKRPLLMVGTLAL 46 (170)
T ss_dssp CCHHHHHHHHHHCSSEEEEECSTTC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcc
Confidence 4599999999999999999999864
No 63
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=55.81 E-value=19 Score=34.64 Aligned_cols=64 Identities=19% Similarity=0.206 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCC----CCCCCcccEEEECcHH
Q 016198 312 DRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGE----TRADDLTTLKISARLG 376 (393)
Q Consensus 312 ~~~~~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~----t~~d~~~~l~I~~d~~ 376 (393)
.|.+++.+...++|++||||..-... -.+|.+-+.+.|.+.+.|.-.. .-+.....+-|.+.++
T Consensus 198 ~RQ~av~~la~~~D~miVVGg~nSSN-T~rL~eia~~~~~~ty~Ie~~~el~~~wl~~~~~VGITAGAS 265 (297)
T 3dnf_A 198 LRQESVKKLAPEVDVMIIIGGKNSGN-TRRLYYISKELNPNTYHIETAEELQPEWFRGVKRVGISAGAS 265 (297)
T ss_dssp HHHHHHHHHGGGSSEEEEESCTTCHH-HHHHHHHHHHHCSSEEEESSGGGCCGGGGTTCSEEEEEECTT
T ss_pred HHHHHHHHHHhhCCEEEEECCCCCch-hHHHHHHHHhcCCCEEEeCChHHCCHHHhCCCCEEEEeecCC
Confidence 57778888889999999999743322 2577777777788888988542 2234455566776643
No 64
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=54.06 E-value=6.1 Score=36.80 Aligned_cols=13 Identities=31% Similarity=0.715 Sum_probs=10.7
Q ss_pred CCCcCCCCCCccC
Q 016198 297 HIPTCQKCNGVLK 309 (393)
Q Consensus 297 ~iP~Cp~CGg~Lr 309 (393)
.+..||+||..|-
T Consensus 221 ~Iv~Cp~CgRIL~ 233 (256)
T 3na7_A 221 DMITCPYCGRILY 233 (256)
T ss_dssp SCEECTTTCCEEE
T ss_pred CEEECCCCCeeEE
Confidence 5789999998664
No 65
>1q16_A Respiratory nitrate reductase 1 alpha chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 3ir7_A* 1y5i_A* 1siw_A* 1y4z_A* 1r27_A* 1y5l_A* 1y5n_A* 3ir6_A* 3ir5_A* 3egw_A*
Probab=53.19 E-value=7.2 Score=44.58 Aligned_cols=52 Identities=12% Similarity=0.118 Sum_probs=39.8
Q ss_pred HhhCCeEEEeccCcch--hhHHHHHHHHHhCCCeEEEECCCCCCCCCcccEEEE
Q 016198 321 AKECDAFLVLGSSLMT--MSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKIS 372 (393)
Q Consensus 321 ~~~aDllLVvGTSl~V--~p~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~ 372 (393)
+..+|++|++|+.... .+.+..+..++++|+++|.|++..+.....+|+.|.
T Consensus 244 ~~~ad~iv~wGsN~~~t~~~~~~~l~~ar~~G~KvVvIDPr~t~ta~~AD~wl~ 297 (1247)
T 1q16_A 244 WYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAVTPDYAEIAKLCDLWLA 297 (1247)
T ss_dssp GGGCSEEEEESCCHHHHSGGGHHHHHHHGGGTCEEEEECSSCCHHHHHSSEEEC
T ss_pred HhhCCEEEEECCCchhccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhCCeEEe
Confidence 5689999999997633 344566667888899999999988776666776644
No 66
>1kqf_A FDH-N alpha, formate dehydrogenase, nitrate-inducible, major S; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1kqg_A*
Probab=52.48 E-value=7.2 Score=43.42 Aligned_cols=53 Identities=17% Similarity=0.315 Sum_probs=39.0
Q ss_pred HHhhCCeEEEeccCcch-hh-HHHHHHHHH-hCCCeEEEECCCCCCCCCcccEEEE
Q 016198 320 AAKECDAFLVLGSSLMT-MS-AYRLVRAAH-EAGSTIAIVNVGETRADDLTTLKIS 372 (393)
Q Consensus 320 ~~~~aDllLVvGTSl~V-~p-~~~lv~~a~-~~ga~li~IN~~~t~~d~~~~l~I~ 372 (393)
.+.++|++|++|+.... .| ....+..++ ++|+++|.|++..+.....+|+.|.
T Consensus 219 D~~~ad~il~~G~N~~~~~p~~~~~i~~a~~~~GaklivIDPr~t~ta~~AD~~l~ 274 (1015)
T 1kqf_A 219 DIKNANVVMVMGGNAAEAHPVGFRWAMEAKNNNDATLIVVDPRFTRTASVADIYAP 274 (1015)
T ss_dssp GGGGCSEEEEESCCHHHHSTTTTHHHHHHHHHSCCEEEEECSSCCHHHHTCSEEEC
T ss_pred HHhhCCEEEEECCChhhhCchHHHHHHHHHHHCCCeEEEEeCCCCchhHhhCeeec
Confidence 36789999999987644 22 233455566 7899999999988876667777754
No 67
>3ml1_A NAPA, periplasmic nitrate reductase; heterodimer, oxidoreductase; HET: MGD HEC; 1.60A {Ralstonia eutropha} PDB: 3o5a_A* 1ogy_A* 2nya_A*
Probab=52.34 E-value=14 Score=39.93 Aligned_cols=53 Identities=19% Similarity=0.309 Sum_probs=38.6
Q ss_pred HHhhCCeEEEeccCcch-hhH-HHHHHHHH--hCCCeEEEECCCCCCCCCcccEEEE
Q 016198 320 AAKECDAFLVLGSSLMT-MSA-YRLVRAAH--EAGSTIAIVNVGETRADDLTTLKIS 372 (393)
Q Consensus 320 ~~~~aDllLVvGTSl~V-~p~-~~lv~~a~--~~ga~li~IN~~~t~~d~~~~l~I~ 372 (393)
.+.++|++|++|+.... .|. +..+..++ ++|+++|.|++..+.....+|+.|.
T Consensus 175 d~~~ad~il~~G~N~~~~~p~~~~~i~~a~~~~~G~klivIDPr~t~ta~~AD~~l~ 231 (802)
T 3ml1_A 175 DFEAADAFVLWGSNMAEMHPILWTRVTDRRLSHPKTRVVVLSTFTHRCFDLADIGII 231 (802)
T ss_dssp GGGTCSEEEEESCCHHHHSHHHHHHHHHHHHHSTTCEEEEEESSBCGGGGTCSEEEE
T ss_pred HHhhCCEEEEECCChHHhChHHHHHHHHHHHhcCCCEEEEEeCCCCchhHHhccEec
Confidence 36799999999987654 443 23333343 3699999999999887777777754
No 68
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=51.43 E-value=16 Score=31.50 Aligned_cols=56 Identities=16% Similarity=0.100 Sum_probs=42.8
Q ss_pred HHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEEC-CCCCCCCCcccEEEECcH
Q 016198 320 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVN-VGETRADDLTTLKISARL 375 (393)
Q Consensus 320 ~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN-~~~t~~d~~~~l~I~~d~ 375 (393)
.+.+-|++|++-.|..+.-....++.++++|+++|.|= ....+..+.+|+.|.-..
T Consensus 113 ~~~~~d~vI~iS~SG~t~~~~~~~~~ak~~g~~vI~IT~~~~s~L~~~ad~~l~~~~ 169 (198)
T 2xbl_A 113 LGNEGDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRGGEMRELCDLLLEVPS 169 (198)
T ss_dssp HCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECSCCCTHHHHCSEEEECSC
T ss_pred hCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCCcHHHhCCEEEEeCC
Confidence 46788999999888888888889999999999977664 344555566777765443
No 69
>1ti6_A Pyrogallol hydroxytransferase large subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.52.2.2 c.81.1.1 PDB: 1ti2_A* 1ti4_A* 1vld_M* 1vle_M* 1vlf_M*
Probab=50.79 E-value=9.1 Score=41.67 Aligned_cols=53 Identities=13% Similarity=0.073 Sum_probs=36.8
Q ss_pred HHhhCCeEEEeccCcchhhH-------HHHHHHHHhCCCeEEEECCCCCCCCCc-ccEEEE
Q 016198 320 AAKECDAFLVLGSSLMTMSA-------YRLVRAAHEAGSTIAIVNVGETRADDL-TTLKIS 372 (393)
Q Consensus 320 ~~~~aDllLVvGTSl~V~p~-------~~lv~~a~~~ga~li~IN~~~t~~d~~-~~l~I~ 372 (393)
.+.++|++|++|+.....|. ..+...++++|+++|.|++..+..... +|+.|.
T Consensus 205 ~~~~ad~il~~G~Np~~~p~~~~~~~~~~~~~~a~~~G~klivIDPr~t~ta~~~Ad~~l~ 265 (875)
T 1ti6_A 205 GLKHAEMIVFWSSDPETNSGIYAGFESNIRRQWLKDLGVDFVFIDPHMNHTARLVADKWFS 265 (875)
T ss_dssp HHHHCSEEEEESCCHHHHCSSSCTTTTHHHHHHHHHTTCEEEEECSBCCHHHHHHCSEEEC
T ss_pred HHhcCCEEEEECCChhhCCccCCCccchHHHHHHHHcCCeEEEECCCCCCcccccCCEEec
Confidence 36899999999998733443 233223777899999999988765544 465543
No 70
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=50.66 E-value=25 Score=29.91 Aligned_cols=56 Identities=13% Similarity=0.103 Sum_probs=42.7
Q ss_pred HHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEE-CCCCCCCCCcccEEEECc
Q 016198 319 EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKISAR 374 (393)
Q Consensus 319 ~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~I-N~~~t~~d~~~~l~I~~d 374 (393)
..+.+-|++|++-.|..+.-....++.++++|+++|.| |....+..+.+|+.|.-.
T Consensus 106 ~~~~~~Dvvi~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~L~~~ad~~l~~~ 162 (188)
T 1tk9_A 106 ALGNEKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDHNLVVP 162 (188)
T ss_dssp HHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEEGGGTTHHHHCSEEEEES
T ss_pred HhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCcchHHcCCEEEEeC
Confidence 34678899999999998888889999999999998776 334455556677765443
No 71
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=50.48 E-value=11 Score=26.10 Aligned_cols=14 Identities=29% Similarity=0.790 Sum_probs=11.3
Q ss_pred cceeecCCCCcccc
Q 016198 229 VYTVVCLDCGFSFC 242 (393)
Q Consensus 229 ~~~~~C~~C~~~~~ 242 (393)
+...+|..|++.|+
T Consensus 2 m~~y~C~vCGyvyd 15 (46)
T 6rxn_A 2 MQKYVCNVCGYEYD 15 (46)
T ss_dssp CCCEEETTTCCEEC
T ss_pred CCEEECCCCCeEEe
Confidence 34679999999886
No 72
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=49.85 E-value=7.4 Score=27.28 Aligned_cols=13 Identities=23% Similarity=0.421 Sum_probs=8.8
Q ss_pred eeecCCCCcccch
Q 016198 231 TVVCLDCGFSFCR 243 (393)
Q Consensus 231 ~~~C~~C~~~~~~ 243 (393)
...|..|+..+..
T Consensus 3 iY~C~rCg~~fs~ 15 (48)
T 4ayb_P 3 VYRCGKCWKTFTD 15 (48)
T ss_dssp --CCCCTTTTCCC
T ss_pred EEEeeccCCCccH
Confidence 3579999987654
No 73
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=49.11 E-value=26 Score=30.21 Aligned_cols=56 Identities=16% Similarity=0.135 Sum_probs=42.4
Q ss_pred HHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECC-CCCCCCCc---ccEEEECc
Q 016198 319 EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNV-GETRADDL---TTLKISAR 374 (393)
Q Consensus 319 ~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~-~~t~~d~~---~~l~I~~d 374 (393)
..+.+-|++|++-.|..+.-....++.++++|+++|.|=- ..++..+. +|+.|.-.
T Consensus 105 ~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~la~~~~~ad~~l~~~ 164 (196)
T 2yva_A 105 ALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIP 164 (196)
T ss_dssp HHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHTTCCTTSEEEECS
T ss_pred hcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCchhhhcccCCCEEEEeC
Confidence 4567899999999999998889999999999999877743 33334444 67776544
No 74
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=48.82 E-value=13 Score=32.11 Aligned_cols=61 Identities=7% Similarity=0.065 Sum_probs=34.2
Q ss_pred HHhhCCeEEEeccCc--chhhHHHHHHHHHhCCCeEEEECCCCCCCCCcccEEE-ECcHHHHHHHHHHhC
Q 016198 320 AAKECDAFLVLGSSL--MTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKI-SARLGEILPRVLDVG 386 (393)
Q Consensus 320 ~~~~aDllLVvGTSl--~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I-~~d~~~vL~~L~~~~ 386 (393)
.+++||++|++|+.+ .-.....+-.. . . .++|.|+..... + ....+ .-...++|..|.+.+
T Consensus 104 ~~~~aDlvl~iG~~~~~~~~~t~~~~~~-~-~-~~iI~i~~~~~~--~-~~~~~~~l~~~~~l~~L~~~~ 167 (170)
T 3cf4_G 104 GNGNYDMIITIGFKKFYINQVLSAAKNF-S-N-LKTIAIERGYIQ--N-ATMSFGNLSKADHYAALDELI 167 (170)
T ss_dssp SSCCCSEEEEESCCHHHHHHHHHHHHHH-C-C-CCEEECSSSCCT--T-SSEECCCCCHHHHHHHHHHHH
T ss_pred HhhcCCEEEEECCccCcccccccccccc-C-C-CeEEEECCCccc--c-hhhhhccCCHHHHHHHHHHHH
Confidence 357999999999998 44332222211 1 2 677766654322 1 11221 123678888887654
No 75
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=48.24 E-value=15 Score=26.38 Aligned_cols=14 Identities=21% Similarity=0.634 Sum_probs=11.2
Q ss_pred ceeecCCCCcccch
Q 016198 230 YTVVCLDCGFSFCR 243 (393)
Q Consensus 230 ~~~~C~~C~~~~~~ 243 (393)
...+|..|++.|+.
T Consensus 2 ~~y~C~vCGyvYd~ 15 (54)
T 4rxn_A 2 KKYTCTVCGYIYDP 15 (54)
T ss_dssp CCEEETTTCCEECT
T ss_pred CceECCCCCeEECC
Confidence 45799999998863
No 76
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=48.20 E-value=27 Score=30.22 Aligned_cols=57 Identities=14% Similarity=0.182 Sum_probs=43.5
Q ss_pred HHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECC-CCCCCCCc---ccEEEECcH
Q 016198 319 EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNV-GETRADDL---TTLKISARL 375 (393)
Q Consensus 319 ~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~-~~t~~d~~---~~l~I~~d~ 375 (393)
..+.+-|++|++-.|..+.-..+.++.++++|+++|.|=- ...+..+. +|+.|.-..
T Consensus 109 ~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~La~~~~~ad~~l~~~~ 169 (199)
T 1x92_A 109 ALGQPGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDGGGMASLLLPEDVEIRVPS 169 (199)
T ss_dssp HHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHCCTTCEEEECSC
T ss_pred hCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCcHHhccccCCEEEEeCC
Confidence 3467889999999999988888999999999999877733 33444556 777765543
No 77
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=45.55 E-value=12 Score=26.56 Aligned_cols=13 Identities=23% Similarity=0.774 Sum_probs=10.7
Q ss_pred eeecCCCCcccch
Q 016198 231 TVVCLDCGFSFCR 243 (393)
Q Consensus 231 ~~~C~~C~~~~~~ 243 (393)
..+|..|++.|+.
T Consensus 2 ~~~C~~CGyvYd~ 14 (52)
T 1yk4_A 2 KLSCKICGYIYDE 14 (52)
T ss_dssp EEEESSSSCEEET
T ss_pred cEEeCCCCeEECC
Confidence 4789999998863
No 78
>1tmo_A TMAO reductase, trimethylamine N-oxide reductase; oxidoreductase, oxotransferase, molybdoenzyme, MO-cofactor, molybdenum; HET: 2MD; 2.50A {Shewanella massilia} SCOP: b.52.2.2 c.81.1.1
Probab=44.57 E-value=14 Score=39.97 Aligned_cols=52 Identities=8% Similarity=0.201 Sum_probs=38.7
Q ss_pred HhhCCeEEEeccCcch-h---------hHHHHHHHHHh---CCC-eEEEECCCCCCCCCcc-cEEEE
Q 016198 321 AKECDAFLVLGSSLMT-M---------SAYRLVRAAHE---AGS-TIAIVNVGETRADDLT-TLKIS 372 (393)
Q Consensus 321 ~~~aDllLVvGTSl~V-~---------p~~~lv~~a~~---~ga-~li~IN~~~t~~d~~~-~l~I~ 372 (393)
++++|++|++|+.... . +....+..+++ +|+ ++|.|++..+.....+ |..|.
T Consensus 208 ~~~ad~il~~G~Np~~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~klivIDPr~t~ta~~a~d~~l~ 274 (829)
T 1tmo_A 208 LEHSDTIVLWSNDPYKNLQVGWNAETHESFAYLAQLKEKVKQGKIRVISIDPVVTKTQAYLGCEQLY 274 (829)
T ss_dssp HHHCSEEEEESCCHHHHTSCCSSBCCCTHHHHHHHHHHHHHHTSSEEEEECSSCCHHHHHHTCEEEC
T ss_pred HhhCCEEEEECCChhhccccccccccchHHHHHHHHHHHhhCCCceEEEECCCCCCcchhhcCEEec
Confidence 6799999999987643 2 24455566666 799 9999999888766666 66653
No 79
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=44.45 E-value=14 Score=30.25 Aligned_cols=11 Identities=45% Similarity=1.198 Sum_probs=9.4
Q ss_pred eeecCCCCccc
Q 016198 231 TVVCLDCGFSF 241 (393)
Q Consensus 231 ~~~C~~C~~~~ 241 (393)
...|.+||..+
T Consensus 67 p~~C~~CG~~F 77 (105)
T 2gmg_A 67 PAQCRKCGFVF 77 (105)
T ss_dssp CCBBTTTCCBC
T ss_pred CcChhhCcCee
Confidence 56999999876
No 80
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=44.33 E-value=27 Score=29.78 Aligned_cols=57 Identities=9% Similarity=0.067 Sum_probs=42.3
Q ss_pred HHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECC-CCCCCCCcccEEEEC
Q 016198 317 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNV-GETRADDLTTLKISA 373 (393)
Q Consensus 317 a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~-~~t~~d~~~~l~I~~ 373 (393)
....+.+-|++|++-.|..+.-....++.++++|+++|.|-- ...+..+.+|+.|.-
T Consensus 81 ~~~~~~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~ 138 (187)
T 3sho_A 81 TLANLRPTDLMIGVSVWRYLRDTVAALAGAAERGVPTMALTDSSVSPPARIADHVLVA 138 (187)
T ss_dssp HHHTCCTTEEEEEECCSSCCHHHHHHHHHHHHTTCCEEEEESCTTSHHHHHCSEEEEC
T ss_pred HHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEeCCCCCcchhhCcEEEEe
Confidence 344567889999998888888888999999999999877753 344444556666553
No 81
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=43.38 E-value=1.3e+02 Score=25.90 Aligned_cols=75 Identities=13% Similarity=0.172 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhhCCeEEEe-----ccCcchhhHHHHHHHHHhCCCeEEEECCCCCC--------------------CC-C
Q 016198 312 DRADKAMEAAKECDAFLVL-----GSSLMTMSAYRLVRAAHEAGSTIAIVNVGETR--------------------AD-D 365 (393)
Q Consensus 312 ~~~~~a~~~~~~aDllLVv-----GTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~--------------------~d-~ 365 (393)
..++.-.+++++||++|.+ |.....--++++- +|...|.|++.+....-. .+ +
T Consensus 56 ~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiG-yA~AlgKPVi~l~~d~r~~~~~~~~~~d~~g~~vedf~~~~N 134 (161)
T 2f62_A 56 DIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVG-CAAALNKMVLTFTSDRRNMREKYGSGVDKDNLRVEGFGLPFN 134 (161)
T ss_dssp HHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHH-HHHHTTCEEEEECSCCSCHHHHHTSSBCTTSCBCCCSSCSSC
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHH-HHHHCCCEEEEEEcCchhhhhhcccccccccccccccCCcch
Confidence 5677778899999999999 5555555566664 355679999998754210 01 1
Q ss_pred ---cccEEEECcHHHHHHHHHHhCC
Q 016198 366 ---LTTLKISARLGEILPRVLDVGS 387 (393)
Q Consensus 366 ---~~~l~I~~d~~~vL~~L~~~~~ 387 (393)
.....+..+.+++|..|.+.+.
T Consensus 135 LMl~~~~~~~~~~~~~l~~l~~~~~ 159 (161)
T 2f62_A 135 LMLYDGVEVFDSFESAFKYFLANFP 159 (161)
T ss_dssp GGGCCSSCEESSHHHHHHHHHHHSC
T ss_pred hhhhhhheeeCCHHHHHHHHHHhhc
Confidence 1122277899999999988764
No 82
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=41.42 E-value=8.1 Score=31.13 Aligned_cols=14 Identities=29% Similarity=0.581 Sum_probs=12.2
Q ss_pred CcEEEEeCCCcCcc
Q 016198 123 AKLIVLTGAGISTE 136 (393)
Q Consensus 123 k~IVVlTGAGISas 136 (393)
++|++.+|+|+||+
T Consensus 4 kkIll~Cg~G~sTS 17 (106)
T 1e2b_A 4 KHIYLFSSAGMSTS 17 (106)
T ss_dssp EEEEEECSSSTTTH
T ss_pred cEEEEECCCchhHH
Confidence 57999999999876
No 83
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=41.17 E-value=28 Score=29.63 Aligned_cols=51 Identities=20% Similarity=0.133 Sum_probs=37.0
Q ss_pred HhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECC-CCCCCCCcccEEE
Q 016198 321 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNV-GETRADDLTTLKI 371 (393)
Q Consensus 321 ~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~-~~t~~d~~~~l~I 371 (393)
+.+-|++|++-.|..+.-....++.++++|+++|.|=- ...+..+.+|+.|
T Consensus 77 ~~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l 128 (186)
T 1m3s_A 77 LAEGDLVIIGSGSGETKSLIHTAAKAKSLHGIVAALTINPESSIGKQADLII 128 (186)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHHHHCSEEE
T ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHCCCEEEEEECCCCCchHHhCCEEE
Confidence 35789999998888888888889999999999877743 2333434445544
No 84
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=41.04 E-value=35 Score=28.91 Aligned_cols=52 Identities=15% Similarity=0.190 Sum_probs=39.7
Q ss_pred HhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECC-CCCCCCCcccEEEEC
Q 016198 321 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNV-GETRADDLTTLKISA 373 (393)
Q Consensus 321 ~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~-~~t~~d~~~~l~I~~ 373 (393)
+.+-|++|++-.|..+.-....++.++++|+++|.|=- ..+ ..+.+|..|.-
T Consensus 80 ~~~~d~vi~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s-l~~~ad~~l~~ 132 (180)
T 1jeo_A 80 YEKDDLLILISGSGRTESVLTVAKKAKNINNNIIAIVCECGN-VVEFADLTIPL 132 (180)
T ss_dssp CCTTCEEEEEESSSCCHHHHHHHHHHHTTCSCEEEEESSCCG-GGGGCSEEEEC
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEeCCCCh-HHHhCCEEEEe
Confidence 35789999998888888888889999999999877743 334 66667766543
No 85
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=39.28 E-value=24 Score=31.57 Aligned_cols=53 Identities=19% Similarity=0.257 Sum_probs=40.1
Q ss_pred HhhCCeEEEeccCcchhhHHHHHHHHHh--CCCeEEEEC-CCCCCCCCcccEEEEC
Q 016198 321 AKECDAFLVLGSSLMTMSAYRLVRAAHE--AGSTIAIVN-VGETRADDLTTLKISA 373 (393)
Q Consensus 321 ~~~aDllLVvGTSl~V~p~~~lv~~a~~--~ga~li~IN-~~~t~~d~~~~l~I~~ 373 (393)
+.+-|++|++-.|-.+.-....++.+++ +|+++|.|- ....+..+.+|+.|.-
T Consensus 104 ~~~~DlvI~iS~SG~t~~~i~~~~~ak~~~~Ga~vI~IT~~~~s~La~~aD~~l~~ 159 (220)
T 3etn_A 104 LQENDLLLLISNSGKTREIVELTQLAHNLNPGLKFIVITGNPDSPLASESDVCLST 159 (220)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHSSEEEEC
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHhcCCCCeEEEEECCCCChhHHhCCEEEEc
Confidence 4678999999888888888899999999 999987774 3444555556666543
No 86
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=39.09 E-value=29 Score=29.45 Aligned_cols=53 Identities=8% Similarity=0.090 Sum_probs=40.1
Q ss_pred HhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEEC-CCCCCCCCcccEEEEC
Q 016198 321 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVN-VGETRADDLTTLKISA 373 (393)
Q Consensus 321 ~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN-~~~t~~d~~~~l~I~~ 373 (393)
+.+-|++|++-.|..+.-....++.++++|+++|.|= ...++..+.+++.|.-
T Consensus 94 ~~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~la~~ad~~l~~ 147 (183)
T 2xhz_A 94 VTPQDVVIAISNSGESSEITALIPVLKRLHVPLICITGRPESSMARAADVHLCV 147 (183)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHSSEEEEC
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEECCCCChhHHhCCEEEEe
Confidence 4678999999988888888899999999999987774 3344455556666543
No 87
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=36.89 E-value=30 Score=30.21 Aligned_cols=53 Identities=15% Similarity=0.224 Sum_probs=40.1
Q ss_pred HhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECC-CCCCCCCcccEEEEC
Q 016198 321 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNV-GETRADDLTTLKISA 373 (393)
Q Consensus 321 ~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~-~~t~~d~~~~l~I~~ 373 (393)
+.+-|++|++-.|..+.-...+++.++++|+++|.|=- ..++..+.+|+.|.-
T Consensus 87 ~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~La~~ad~~l~~ 140 (200)
T 1vim_A 87 ITDQDVLVGISGSGETTSVVNISKKAKDIGSKLVAVTGKRDSSLAKMADVVMVV 140 (200)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEESCTTSHHHHHCSEEEEC
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChHHHhCCEEEEE
Confidence 45789999999888888888999999999999877743 334445566666543
No 88
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=36.34 E-value=11 Score=38.81 Aligned_cols=66 Identities=12% Similarity=0.015 Sum_probs=39.2
Q ss_pred HHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCCcccEEEECcHHHHHHHHHHhC
Q 016198 317 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTTLKISARLGEILPRVLDVG 386 (393)
Q Consensus 317 a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~~~~l~I~~d~~~vL~~L~~~~ 386 (393)
+.+.++++|+||++|+.+.......+.... ...++|.|+.++...... ....-.+.++|..|.+.+
T Consensus 283 ~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~--~~~~~i~i~~d~~~~~~~--~~~~~~~~~~l~~L~~~l 348 (565)
T 2nxw_A 283 ITRLVEESDGLFLLGAILSDTNFAVSQRKI--DLRKTIHAFDRAVTLGYH--TYADIPLAGLVDALLERL 348 (565)
T ss_dssp HHHHHHTCSEEEEESCCBCSSTTSBCTTTS--CGGGEEEEETTEEEETTE--EEESCCHHHHHHHHHHTS
T ss_pred HHHHHHhCCEEEEECCCccccccccccccC--CCCcEEEEeCCceeeCCc--ccCCccHHHHHHHHHHhc
Confidence 345678999999999977543321111111 124688888766544322 333445677888887754
No 89
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=35.87 E-value=1.2e+02 Score=28.53 Aligned_cols=23 Identities=9% Similarity=0.146 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHhCCCeEEEECCC
Q 016198 337 MSAYRLVRAAHEAGSTIAIVNVG 359 (393)
Q Consensus 337 ~p~~~lv~~a~~~ga~li~IN~~ 359 (393)
..+.++++.|.+.+.|+|.+.-.
T Consensus 143 ~K~~r~ie~A~~~~lPlI~l~ds 165 (285)
T 2f9i_B 143 EKICRIIDYCTENRLPFILFSAS 165 (285)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEeC
Confidence 55677788888888888777643
No 90
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=35.47 E-value=25 Score=26.04 Aligned_cols=11 Identities=18% Similarity=0.709 Sum_probs=8.2
Q ss_pred CCCcCCCCCCc
Q 016198 297 HIPTCQKCNGV 307 (393)
Q Consensus 297 ~iP~Cp~CGg~ 307 (393)
..-+|+.||..
T Consensus 37 ~~iRC~~CG~R 47 (63)
T 3h0g_L 37 EVIRCRECGHR 47 (63)
T ss_dssp SCCCCSSSCCC
T ss_pred CceECCCCCcE
Confidence 34689999973
No 91
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=35.35 E-value=32 Score=30.92 Aligned_cols=52 Identities=6% Similarity=0.164 Sum_probs=40.5
Q ss_pred HhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCC-CC-----------CCCCcccEEEE
Q 016198 321 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVG-ET-----------RADDLTTLKIS 372 (393)
Q Consensus 321 ~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~-~t-----------~~d~~~~l~I~ 372 (393)
+.+-|++|++-.|-.+.-..++++.|+++|+++|.|--. .+ ++.+.+|+.|.
T Consensus 106 ~~~~Dv~I~iS~SG~t~~~i~~~~~Ak~~G~~vI~IT~~~~s~~~~~~~~~g~~La~~aD~~l~ 169 (243)
T 3cvj_A 106 VTNKDVIMIISNSGRNTVPVEMAIESRNIGAKVIAMTSMKHSQKVTSRHKSGKKLYEYADVVLD 169 (243)
T ss_dssp CCTTCEEEEECSSCCSHHHHHHHHHHHHHTCEEEEEECHHHHHHSCCCSTTSCCGGGGCSEEEE
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCcccccccccCCCcCcHHHhCCEEEE
Confidence 567899999999999988889999999999998777332 22 45566777764
No 92
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=33.65 E-value=15 Score=28.67 Aligned_cols=12 Identities=33% Similarity=0.711 Sum_probs=7.3
Q ss_pred eeecCCCCcccc
Q 016198 231 TVVCLDCGFSFC 242 (393)
Q Consensus 231 ~~~C~~C~~~~~ 242 (393)
..+|..|+..+.
T Consensus 18 ~~~C~~C~~~~~ 29 (81)
T 2jrp_A 18 TAHCETCAKDFS 29 (81)
T ss_dssp EEECTTTCCEEE
T ss_pred ceECccccccCC
Confidence 446777776554
No 93
>2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} PDB: 3l5o_A
Probab=32.67 E-value=40 Score=31.78 Aligned_cols=68 Identities=18% Similarity=0.155 Sum_probs=49.6
Q ss_pred HHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCCccc----E---EEECcHHHHHHHHHHhCC
Q 016198 319 EAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTT----L---KISARLGEILPRVLDVGS 387 (393)
Q Consensus 319 ~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~~~~----l---~I~~d~~~vL~~L~~~~~ 387 (393)
..+..||++++-||++.-....+++..++ .+..+|++-+..+-.+...+ . ..-.|.+.++..+...++
T Consensus 182 ~ll~~aD~viiTGsTlvN~Ti~~lL~~~~-~a~~vvl~GPS~p~~P~lf~~Gv~~l~G~~V~D~~~~~~~i~~Ggg 256 (270)
T 2h1q_A 182 FILPECDYVYITCASVVDKTLPRLLELSR-NARRITLVGPGTPLAPVLFEHGLQELSGFMVKDNARAFRIVAGAEK 256 (270)
T ss_dssp HHGGGCSEEEEETHHHHHTCHHHHHHHTT-TSSEEEEESTTCCCCGGGGGTTCSEEEEEEESCHHHHHHHHTTSSC
T ss_pred HHhhcCCEEEEEeeeeecCCHHHHHHhCc-cCCeEEEEecChhhhHHHHhcCcCEEEEeEecCHHHHHHHHHcCCC
Confidence 36789999999999999999999998875 34589999988655544322 1 134567777776665443
No 94
>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*
Probab=32.29 E-value=36 Score=30.82 Aligned_cols=73 Identities=12% Similarity=0.049 Sum_probs=48.0
Q ss_pred HHHHHHHHhhCCeEEEeccCcchhhHHHHHHH----------HHhCCCeEEEECCCCCC----CCC-----cccEEEECc
Q 016198 314 ADKAMEAAKECDAFLVLGSSLMTMSAYRLVRA----------AHEAGSTIAIVNVGETR----ADD-----LTTLKISAR 374 (393)
Q Consensus 314 ~~~a~~~~~~aDllLVvGTSl~V~p~~~lv~~----------a~~~ga~li~IN~~~t~----~d~-----~~~l~I~~d 374 (393)
|++.-+.+.++|++||||..-.|-|+++--.- +- +-..+|.+.++-.. .+. ..+.-+-||
T Consensus 111 MdeIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~-kAk~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfGD 189 (207)
T 1djl_A 111 MDEINHDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVW-KSKQVIVMKRSLGVGYAAVDNPIFYKPNTAMLLGD 189 (207)
T ss_dssp HHHHGGGGGGCSEEEEESCCGGGCTHHHHCTTSTTTTCCCCCGG-GSSEEEEEESSSCCCTTCCCCGGGGSTTEEEEESC
T ss_pred HHHHhhhhhhcCEEEEeccccccCCccccCCCCCccCCeeecce-ecCEEEEEECCCCCCcCCCcCcceecCCceEEecc
Confidence 55556678899999999999999988763110 11 11245556554321 122 345568999
Q ss_pred HHHHHHHHHHhCC
Q 016198 375 LGEILPRVLDVGS 387 (393)
Q Consensus 375 ~~~vL~~L~~~~~ 387 (393)
+.+.+.+|+..+.
T Consensus 190 AK~~~~~l~~~l~ 202 (207)
T 1djl_A 190 AKKTCDALQAKVR 202 (207)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987653
No 95
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=31.52 E-value=38 Score=29.63 Aligned_cols=51 Identities=10% Similarity=0.126 Sum_probs=38.4
Q ss_pred HHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECC-CCCCC--CCcccEE
Q 016198 320 AAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNV-GETRA--DDLTTLK 370 (393)
Q Consensus 320 ~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~-~~t~~--d~~~~l~ 370 (393)
.++..|.+|++-.|..-.-.-+++..++++|+++|-|-- ..+.. .+..++.
T Consensus 74 ~i~~~D~vii~S~Sg~n~~~ie~A~~ake~G~~vIaITs~~~~~~~~~~L~d~a 127 (170)
T 3jx9_A 74 TLHAVDRVLIFTPDTERSDLLASLARYDAWHTPYSIITLGDVTETLERSIAPLA 127 (170)
T ss_dssp CCCTTCEEEEEESCSCCHHHHHHHHHHHHHTCCEEEEESSCCCTTGGGSSSCEE
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEeCcchhccccCcHHHHH
Confidence 357899999999999887778999999999999877755 55443 3444443
No 96
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=31.14 E-value=18 Score=30.95 Aligned_cols=15 Identities=27% Similarity=0.647 Sum_probs=10.5
Q ss_pred cccceeecCCCCccc
Q 016198 227 GTVYTVVCLDCGFSF 241 (393)
Q Consensus 227 Gs~~~~~C~~C~~~~ 241 (393)
|.+.-.+|.+|+..+
T Consensus 43 g~L~~~rC~~CG~~~ 57 (145)
T 2gnr_A 43 NKIIGSKCSKCGRIF 57 (145)
T ss_dssp TCCEEEECTTTCCEE
T ss_pred CEEEEEEECCCCcEE
Confidence 334466999999764
No 97
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C*
Probab=29.95 E-value=32 Score=30.43 Aligned_cols=72 Identities=10% Similarity=0.143 Sum_probs=46.3
Q ss_pred HHHHHHHHhhCCeEEEeccCcchhhHHHHHH----------HHHhCCCeEEEECCCCCC----CC-----CcccEEEECc
Q 016198 314 ADKAMEAAKECDAFLVLGSSLMTMSAYRLVR----------AAHEAGSTIAIVNVGETR----AD-----DLTTLKISAR 374 (393)
Q Consensus 314 ~~~a~~~~~~aDllLVvGTSl~V~p~~~lv~----------~a~~~ga~li~IN~~~t~----~d-----~~~~l~I~~d 374 (393)
|++.-+.+.++|++||||..-.|.|+++--. .+- +-..++.+.++-.. .+ ...+.-+-||
T Consensus 89 MdeIN~df~~tDv~lVIGANDvvNpaA~~dp~SpI~GMPvl~v~-kAk~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfGD 167 (180)
T 1pno_A 89 LEEINSSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVE-KAGTVLFIKRSMASGYAGVENELFFRNNTMMLFGD 167 (180)
T ss_dssp HHHHGGGGGGCSEEEEESCCGGGCGGGTTCTTSTTTTCCCCCGG-GSSEEEEEESSSCCCTTCCCCGGGTSTTEEEEESC
T ss_pred HHHHhhhhhhcCEEEEeccccccCchhccCCCCCcCCCeeechh-hCCEEEEEECCCCCCcCCCcCcceecCCceEEecc
Confidence 5555567789999999999999877754100 011 11245556554311 12 1345668999
Q ss_pred HHHHHHHHHHhC
Q 016198 375 LGEILPRVLDVG 386 (393)
Q Consensus 375 ~~~vL~~L~~~~ 386 (393)
+.+.+.+|+..+
T Consensus 168 AK~~~~~l~~~l 179 (180)
T 1pno_A 168 AKKMTEQIVQAM 179 (180)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
No 98
>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}
Probab=29.93 E-value=37 Score=32.02 Aligned_cols=70 Identities=17% Similarity=0.146 Sum_probs=49.5
Q ss_pred HHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCCCCCCccc----E---EEECcHHHHHHHHHHhCC
Q 016198 317 AMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGETRADDLTT----L---KISARLGEILPRVLDVGS 387 (393)
Q Consensus 317 a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t~~d~~~~----l---~I~~d~~~vL~~L~~~~~ 387 (393)
+...+.+||++++-||+|.-....++++.++ ....++++-+..+-.+..++ . .+--|.+.++..+....+
T Consensus 180 ~~~~lp~~D~viiTgstlvN~Tl~~lL~~~~-~a~~vvl~GPStp~~P~lf~~Gv~~laG~~V~d~~~~~~~i~~Gg~ 256 (270)
T 3l5o_A 180 SEFILPECDYVYITCASVVDKTLPRLLELSR-NARRITLVGPGTPLAPVLFEHGLQELSGFMVKDNARAFRIVAGAEK 256 (270)
T ss_dssp HHHHGGGCSEEEEETHHHHHTCHHHHHHHTT-TSSEEEEESTTCCCCGGGGGTTCSEEEEEEESCHHHHHHHHTTSSC
T ss_pred HHHhhccCCEEEEEeehhhcCCHHHHHhhCC-CCCEEEEECCCchhhHHHHhcCcCEEEEEEEcCHHHHHHHHhcCCC
Confidence 4456789999999999999999999998875 34578899988655554322 1 134567777766654433
No 99
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=29.23 E-value=31 Score=31.21 Aligned_cols=72 Identities=10% Similarity=0.149 Sum_probs=46.5
Q ss_pred HHHHHHHHhhCCeEEEeccCcchhhHHHHHH----------HHHhCCCeEEEECCCCCC----CCC-----cccEEEECc
Q 016198 314 ADKAMEAAKECDAFLVLGSSLMTMSAYRLVR----------AAHEAGSTIAIVNVGETR----ADD-----LTTLKISAR 374 (393)
Q Consensus 314 ~~~a~~~~~~aDllLVvGTSl~V~p~~~lv~----------~a~~~ga~li~IN~~~t~----~d~-----~~~l~I~~d 374 (393)
+++.-+.+.++|++||||..-.|-|+++--. .+- +-..++.+.++-.. .+. ..+.-+-||
T Consensus 112 MdeIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~-kAk~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfGD 190 (203)
T 2fsv_C 112 LEEINSSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVW-KAGTVLFIKRSMASGYAGVENELFFRNNTMMLFGD 190 (203)
T ss_dssp HHHHGGGSTTCSEEEEESCCGGGCGGGTSCTTSTTTTCCCCCGG-GSSEEEEEESSSCCCTTCCCCGGGGSTTEEEEESC
T ss_pred HHHHhhhhhhcCEEEEeccccccCchhhcCCCCCcCCCeeeccc-cCCEEEEEECCCCCCcCCCcCcceecCCceEEecc
Confidence 5555566789999999999999977755100 011 11245566654321 122 345568999
Q ss_pred HHHHHHHHHHhC
Q 016198 375 LGEILPRVLDVG 386 (393)
Q Consensus 375 ~~~vL~~L~~~~ 386 (393)
+.+.+.+|+..+
T Consensus 191 AK~~~~~l~~~l 202 (203)
T 2fsv_C 191 AKKMTEQIVQAM 202 (203)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999998865
No 100
>4hpq_A ATG31, KLTH0C07942P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=29.09 E-value=23 Score=26.53 Aligned_cols=15 Identities=27% Similarity=0.319 Sum_probs=12.6
Q ss_pred cccccceeEEeeccc
Q 016198 10 FNQKNTTMLLRLPFF 24 (393)
Q Consensus 10 ~~~~~~~~~~~~~~~ 24 (393)
.|.+|||...||||-
T Consensus 1 Mn~~NttVyVRlPg~ 15 (69)
T 4hpq_A 1 MNSENTIVYVRVAGR 15 (69)
T ss_dssp CCSSSCEEEEECSSC
T ss_pred CCCCCeEEEEEecCC
Confidence 378899999999984
No 101
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=28.88 E-value=30 Score=30.33 Aligned_cols=34 Identities=18% Similarity=0.138 Sum_probs=0.0
Q ss_pred hhCCeEEEeccCcc--hhhHHHHHHHHHhCCCeEEEEC
Q 016198 322 KECDAFLVLGSSLM--TMSAYRLVRAAHEAGSTIAIVN 357 (393)
Q Consensus 322 ~~aDllLVvGTSl~--V~p~~~lv~~a~~~ga~li~IN 357 (393)
++|||+|.||+.+. ......+-..+. ++++|-||
T Consensus 107 ~~aDLvI~iG~rf~~~~~~t~~~~~fap--~akii~Id 142 (174)
T 1ytl_A 107 GNYDLVLMLGSIYYHGSQMLAAIKNFAP--HIRALAID 142 (174)
T ss_dssp CCCSEEEEESCCHHHHHHHHHHHHHHCT--TCEEEECS
T ss_pred CCCCEEEEECCcCCccccccccccccCC--CCeEEEeC
No 102
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=28.69 E-value=2.2e+02 Score=24.18 Aligned_cols=48 Identities=13% Similarity=0.037 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCC
Q 016198 312 DRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGE 360 (393)
Q Consensus 312 ~~~~~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~ 360 (393)
..+++-.+++++||+|+++.+....--++++- +|.+.|.+++.+....
T Consensus 66 ~i~~~d~~~i~~aD~vva~~~~~d~Gt~~EiG-yA~algKPVi~l~~~~ 113 (165)
T 2khz_A 66 FIHEQDLNWLQQADVVVAEVTQPSLGVGYELG-RAVALGKPILCLFRPQ 113 (165)
T ss_dssp HHHHHHHHHHHHCSEEEEECSSCCHHHHHHHH-HHHHTCSSEEEEECTT
T ss_pred HHHHHHHHHHHhCCEEEEECCCCCCCHHHHHH-HHHHCCCEEEEEEcCC
Confidence 45667778999999999987744444445554 3556799999885544
No 103
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=28.23 E-value=41 Score=28.31 Aligned_cols=52 Identities=23% Similarity=0.273 Sum_probs=34.4
Q ss_pred CCCCCHHHHHHHHHHhcCCccEEEEccCcchhhhcCCCceee--ecccceeecCCCCcccch
Q 016198 184 AAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLEL--HGTVYTVVCLDCGFSFCR 243 (393)
Q Consensus 184 ~a~Pn~~H~~La~L~~~g~l~~ViTQNIDgLh~rAG~~~iel--HGs~~~~~C~~C~~~~~~ 243 (393)
...+...|+.|..|++.|.+..+-..|--.. +++ +..=..++|.+||+..+.
T Consensus 58 ~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~--------Y~~~~~~~H~HliC~~Cg~v~~~ 111 (150)
T 2xig_A 58 NTSISSVYRILNFLEKENFISVLETSKSGRR--------YEIAAKEHHDHIICLHCGKIIEF 111 (150)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEEETTTEEE--------EEESCSCCCEEEEETTTCCEEEE
T ss_pred CCCHhhHHHHHHHHHHCCcEEEEEeCCCceE--------EEecCCCCceEEEECCCCCEEEe
Confidence 4566788999999999998766554431111 332 112256899999987653
No 104
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=27.83 E-value=37 Score=29.38 Aligned_cols=52 Identities=15% Similarity=0.150 Sum_probs=39.1
Q ss_pred HhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECC-CCCCCCCcccEEEE
Q 016198 321 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNV-GETRADDLTTLKIS 372 (393)
Q Consensus 321 ~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~-~~t~~d~~~~l~I~ 372 (393)
+.+-|++|++-.|..+.-....++.++++|+++|.|-- ..++..+.+|+.|.
T Consensus 90 ~~~~dvvI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~ 142 (201)
T 3fxa_A 90 LQKEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFP 142 (201)
T ss_dssp CCTTCEEEEECSSSCCHHHHTTHHHHHHHTCEEEEEESCTTSHHHHHCSEEEE
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEEE
Confidence 46779999998888888888888889999999877753 34445555666654
No 105
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=27.58 E-value=22 Score=30.31 Aligned_cols=11 Identities=36% Similarity=0.794 Sum_probs=8.6
Q ss_pred eeecCCCCccc
Q 016198 231 TVVCLDCGFSF 241 (393)
Q Consensus 231 ~~~C~~C~~~~ 241 (393)
-.+|.+|+..+
T Consensus 47 ~~rC~~CG~~~ 57 (145)
T 3irb_A 47 GSKCSKCGRIF 57 (145)
T ss_dssp EEECTTTCCEE
T ss_pred EEEeCCCCcEE
Confidence 45899999764
No 106
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=27.49 E-value=94 Score=31.55 Aligned_cols=35 Identities=23% Similarity=0.356 Sum_probs=22.7
Q ss_pred hCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECCCCC
Q 016198 323 ECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNVGET 361 (393)
Q Consensus 323 ~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~~~t 361 (393)
+.| |||||.+..=..++- .+.+.|.++++|-..+.
T Consensus 126 ~~D-VvVVGaG~aGl~aA~---~la~~G~~V~vlEk~~~ 160 (571)
T 1y0p_A 126 TVD-VVVVGSGGAGFSAAI---SATDSGAKVILIEKEPV 160 (571)
T ss_dssp ECS-EEEECCSHHHHHHHH---HHHHTTCCEEEECSSSS
T ss_pred CCC-EEEECCCHHHHHHHH---HHHHCCCcEEEEeCCCC
Confidence 456 468898875443332 34456999999977653
No 107
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=27.45 E-value=17 Score=29.44 Aligned_cols=16 Identities=31% Similarity=0.526 Sum_probs=13.4
Q ss_pred CCcEEEEeCCCcCccC
Q 016198 122 SAKLIVLTGAGISTEC 137 (393)
Q Consensus 122 ak~IVVlTGAGISasS 137 (393)
.++|++.+|+|||++.
T Consensus 21 ~kkIlvvC~sG~gTS~ 36 (113)
T 1tvm_A 21 KRKIIVACGGAVATST 36 (113)
T ss_dssp SEEEEEESCSCSSHHH
T ss_pred ccEEEEECCCCHHHHH
Confidence 3579999999999874
No 108
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=27.19 E-value=52 Score=27.30 Aligned_cols=55 Identities=24% Similarity=0.327 Sum_probs=33.0
Q ss_pred CCCCCHHHHHHHHHHhcCCccEEEEccCcchhhhcCCCceeeecccceeecCCCCcccch
Q 016198 184 AAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLELHGTVYTVVCLDCGFSFCR 243 (393)
Q Consensus 184 ~a~Pn~~H~~La~L~~~g~l~~ViTQNIDgLh~rAG~~~ielHGs~~~~~C~~C~~~~~~ 243 (393)
...+...|+.|..|++.|.+..+-..+--..++..... +.=..+.|.+||+..+.
T Consensus 45 ~is~aTVYR~L~~L~e~Glv~~~~~~~g~~~Y~~~~~~-----~~H~HliC~~Cg~v~~~ 99 (139)
T 3mwm_A 45 AVGLTTVYRTLQSLADAGEVDVLRTAEGESVYRRCSTG-----DHHHHLVCRACGKAVEV 99 (139)
T ss_dssp CCCHHHHHHHHHHHHHTTSSEEEECTTSCEEEECCSCS-----SCCEEEEETTTCCEEEE
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEcCCCceEEEECCCC-----CCccEEEECCCCCEeec
Confidence 45566789999999999987655432211122211100 11235899999987653
No 109
>3fj1_A Putative phosphosugar isomerase; YP_167080.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.75A {Silicibacter pomeroyi dss-3}
Probab=26.55 E-value=42 Score=32.29 Aligned_cols=53 Identities=13% Similarity=0.114 Sum_probs=41.0
Q ss_pred hhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEE-CCCCCCCCCcccEEEECc
Q 016198 322 KECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKISAR 374 (393)
Q Consensus 322 ~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~I-N~~~t~~d~~~~l~I~~d 374 (393)
.+-|++|++--|..+.-....++.+++.|++++-| |...++..+.+|+.|.-.
T Consensus 90 ~~~dlvI~iS~SG~T~e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~ 143 (344)
T 3fj1_A 90 LDRALCLAVSQSGKSPDIVAMTRNAGRDGALCVALTNDAASPLAGVSAHTIDIH 143 (344)
T ss_dssp CTTEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHHHTSSEEEECC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHCCCcEEEEECCCCChHHHhcCEeeecC
Confidence 57789999988888888888889999999997655 666666666667766543
No 110
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=26.29 E-value=1.2e+02 Score=24.69 Aligned_cols=59 Identities=14% Similarity=0.014 Sum_probs=37.1
Q ss_pred CCeEEEeccCcchh-hHHHHHHHHHhCCCeEEEECCCCCC------------CCCcccEEEECcHHHHHHHHH
Q 016198 324 CDAFLVLGSSLMTM-SAYRLVRAAHEAGSTIAIVNVGETR------------ADDLTTLKISARLGEILPRVL 383 (393)
Q Consensus 324 aDllLVvGTSl~V~-p~~~lv~~a~~~ga~li~IN~~~t~------------~d~~~~l~I~~d~~~vL~~L~ 383 (393)
..-+.|||.|-.-. +....++...+.|-+++-||+.... +++ .|+.+-.--.+..++++
T Consensus 4 p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~dlp~-vDlavi~~p~~~v~~~v 75 (122)
T 3ff4_A 4 MKKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEVLGKTIINERPVIEG-VDTVTLYINPQNQLSEY 75 (122)
T ss_dssp CCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEETTEECBCSCCCCTT-CCEEEECSCHHHHGGGH
T ss_pred CCEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcCCCeeccCChHHCCC-CCEEEEEeCHHHHHHHH
Confidence 34578899998764 3445555566668899999997432 244 67765544444444433
No 111
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=25.20 E-value=1.6e+02 Score=24.72 Aligned_cols=47 Identities=19% Similarity=0.250 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECC
Q 016198 312 DRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNV 358 (393)
Q Consensus 312 ~~~~~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~ 358 (393)
+.++++.+.+.+++-++++|.+..-..+..+......-|.++..++.
T Consensus 27 ~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~ 73 (187)
T 3sho_A 27 EAIEAAVEAICRADHVIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTE 73 (187)
T ss_dssp HHHHHHHHHHHHCSEEEEECCGGGHHHHHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHHHHHHHhCCEEEEEecCchHHHHHHHHHHHHhcCCCEEEecC
Confidence 56888899999999999999988766666666666677888888883
No 112
>3hba_A Putative phosphosugar isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE CIT; 2.00A {Shewanella denitrificans OS217}
Probab=25.05 E-value=91 Score=29.79 Aligned_cols=53 Identities=21% Similarity=0.211 Sum_probs=41.1
Q ss_pred hhCCeEEEeccCcchhhHHHHHHHHHhCCCeEE-EECCCCCCCCCcccEEEECc
Q 016198 322 KECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIA-IVNVGETRADDLTTLKISAR 374 (393)
Q Consensus 322 ~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li-~IN~~~t~~d~~~~l~I~~d 374 (393)
.+-|++|++--|..+.-....++.+++.|++++ +.|...+...+.+|..|.-.
T Consensus 89 ~~~dl~i~iS~SG~T~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~ 142 (334)
T 3hba_A 89 LAGGLVIVISQSGRSPDILAQARMAKNAGAFCVALVNDETAPIKDIVDVVIPLR 142 (334)
T ss_dssp CTTCEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESCTTSGGGGTSSEEEECC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEEeCCCCChHHHhcCEeeeec
Confidence 577999999888888888888889999998865 55566667777777776543
No 113
>2aml_A SIS domain protein; 46906266, LMO0035 protein, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=24.70 E-value=73 Score=30.82 Aligned_cols=54 Identities=6% Similarity=0.120 Sum_probs=42.6
Q ss_pred HhhCCeEEEeccCcchhhHHHHHHHHHhC-CCeEE-EECCCCCCCCCcccEEEECc
Q 016198 321 AKECDAFLVLGSSLMTMSAYRLVRAAHEA-GSTIA-IVNVGETRADDLTTLKISAR 374 (393)
Q Consensus 321 ~~~aDllLVvGTSl~V~p~~~lv~~a~~~-ga~li-~IN~~~t~~d~~~~l~I~~d 374 (393)
+.+-|++|++--|..+.-....++.++++ |+++| +.|...+.+.+.+|+.|.-.
T Consensus 95 ~~~~dlvI~iS~SG~T~e~l~a~~~ak~~~Ga~vIaIT~~~~S~La~~ad~~l~~~ 150 (373)
T 2aml_A 95 SSHLDLVIGISQSGQSTSTISALERVKKEASVPVVALTSDVTSEIAEFADITLDIG 150 (373)
T ss_dssp CTTCCEEEEECSSSCBHHHHHHHHHHHHHCCCCEEEEESCTTSGGGGGCSEEEECS
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHhCCCcEEEEECCCCChHHHhcCcceecC
Confidence 56789999999999998888999999998 97754 55666677777777776543
No 114
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=23.90 E-value=1.7e+02 Score=24.34 Aligned_cols=46 Identities=9% Similarity=0.117 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEEC
Q 016198 312 DRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVN 357 (393)
Q Consensus 312 ~~~~~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN 357 (393)
+.++++.+.+.+++-++++|++..-..+..+......-|.+...++
T Consensus 28 ~~i~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~ 73 (180)
T 1jeo_A 28 NKLDSLIDRIIKAKKIFIFGVGRSGYIGRCFAMRLMHLGFKSYFVG 73 (180)
T ss_dssp HHHHHHHHHHHHCSSEEEECCHHHHHHHHHHHHHHHHTTCCEEETT
T ss_pred HHHHHHHHHHHhCCEEEEEeecHHHHHHHHHHHHHHHcCCeEEEeC
Confidence 5678888889999999999998766666666666556677766664
No 115
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=23.76 E-value=62 Score=30.49 Aligned_cols=53 Identities=11% Similarity=0.105 Sum_probs=40.8
Q ss_pred HhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEEC-CCCCCCCCcccEEEEC
Q 016198 321 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVN-VGETRADDLTTLKISA 373 (393)
Q Consensus 321 ~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN-~~~t~~d~~~~l~I~~ 373 (393)
+.+-|++|++-.|..+.-....++.|++.|+++|.|- ...++..+.+|+.|.-
T Consensus 138 l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~S~La~~AD~~I~~ 191 (306)
T 1nri_A 138 FSKNDVLVGIAASGRTPYVIAGLQYAKSLGALTISIASNPKSEMAEIADIAIET 191 (306)
T ss_dssp CCTTSEEEEECTTSCCHHHHHHHHHHHHHTCEEEEEESSTTCHHHHHSSEEEEC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCChHHHhCCEEEEc
Confidence 5688999999999999888899999999999987663 3334455566766653
No 116
>1moq_A Glucosamine 6-phosphate synthase; glutamine amidotransferase; HET: GLP MES; 1.57A {Escherichia coli} SCOP: c.80.1.1 PDB: 1mor_A* 1mos_A*
Probab=23.61 E-value=41 Score=32.45 Aligned_cols=54 Identities=17% Similarity=0.137 Sum_probs=41.3
Q ss_pred HhhCCeEEEeccCcchhhHHHHHHHHHhCC-CeEEEE-CCCCCCCCCcccEEEECc
Q 016198 321 AKECDAFLVLGSSLMTMSAYRLVRAAHEAG-STIAIV-NVGETRADDLTTLKISAR 374 (393)
Q Consensus 321 ~~~aDllLVvGTSl~V~p~~~lv~~a~~~g-a~li~I-N~~~t~~d~~~~l~I~~d 374 (393)
+.+-|++|++--|..+.-....++.++++| +++|-| |...+.+.+.+|+.|.-.
T Consensus 97 ~~~~dlvI~iS~SG~T~e~l~a~~~ak~~G~a~viaIT~~~~S~La~~ad~~l~~~ 152 (368)
T 1moq_A 97 VRRNSLMITLSQSGETADTLAGLRLSKELGYLGSLAICNVPGSSLVRESDLALMTN 152 (368)
T ss_dssp CCTTEEEEEEESSSCCHHHHHHHHHHTTTTCSEEEEEESSTTCHHHHHSSEEEECC
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCCeEEEEECCCCChHHHhCCEEEEcC
Confidence 457789999999999888889999999999 886655 666666666666665543
No 117
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=23.59 E-value=26 Score=28.26 Aligned_cols=12 Identities=25% Similarity=0.670 Sum_probs=8.4
Q ss_pred CCcCCCCCCccC
Q 016198 298 IPTCQKCNGVLK 309 (393)
Q Consensus 298 iP~Cp~CGg~Lr 309 (393)
.+.||.|+.+|.
T Consensus 61 ~a~CPdC~q~Le 72 (101)
T 2jne_A 61 KALCPDCHQPLQ 72 (101)
T ss_dssp EEECTTTCSBCE
T ss_pred cccCcchhhHHH
Confidence 467888887664
No 118
>2a3n_A Putative glucosamine-fructose-6-phosphate aminotr; structural genomics, joint center for structural genomics; HET: MSE; 1.23A {Salmonella typhimurium}
Probab=22.89 E-value=78 Score=30.29 Aligned_cols=54 Identities=13% Similarity=0.149 Sum_probs=40.9
Q ss_pred HhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEE-CCCCCCCCCcccEEEECc
Q 016198 321 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKISAR 374 (393)
Q Consensus 321 ~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~I-N~~~t~~d~~~~l~I~~d 374 (393)
+.+-|++|++--|..+.-....++.++++|+++|.| |...++..+.+|..|.-.
T Consensus 100 l~~~dlvI~iS~SG~t~e~~~a~~~ak~~Ga~vi~IT~~~~S~La~~ad~~l~~~ 154 (355)
T 2a3n_A 100 LNKDSVVITLSKSGDTKESVAIAEWCKAQGIRVVAITKNADSPLAQAATWHIPMR 154 (355)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHHHTCSEEEECC
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhhHhCCEEEEeC
Confidence 357899999999998888888899999999886555 555555666677766543
No 119
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=22.75 E-value=1.2e+02 Score=22.68 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=11.3
Q ss_pred ecCCCCcccchhhHHHHH
Q 016198 233 VCLDCGFSFCRDLFQDQV 250 (393)
Q Consensus 233 ~C~~C~~~~~~~~~~~~l 250 (393)
+...||+.|.+.-+..++
T Consensus 28 V~~~cGhtf~r~~I~~~l 45 (85)
T 2kr4_A 28 VRLPSGTVMDRSIILRHL 45 (85)
T ss_dssp EECTTSCEEEHHHHHHHH
T ss_pred eECCCCCEECHHHHHHHH
Confidence 445588888776654443
No 120
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=22.67 E-value=32 Score=27.37 Aligned_cols=13 Identities=38% Similarity=0.833 Sum_probs=9.4
Q ss_pred cEEEEeCCCcCcc
Q 016198 124 KLIVLTGAGISTE 136 (393)
Q Consensus 124 ~IVVlTGAGISas 136 (393)
+|++.+|+|+|++
T Consensus 6 kIlvvC~~G~~TS 18 (109)
T 2l2q_A 6 NILLVCGAGMSTS 18 (109)
T ss_dssp EEEEESSSSCSSC
T ss_pred EEEEECCChHhHH
Confidence 3777777777765
No 121
>3knz_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 2.50A {Salmonella enterica subsp}
Probab=22.66 E-value=69 Score=31.09 Aligned_cols=53 Identities=11% Similarity=0.124 Sum_probs=42.2
Q ss_pred HhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEE-EECCCCCCCCCcccEEEEC
Q 016198 321 AKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIA-IVNVGETRADDLTTLKISA 373 (393)
Q Consensus 321 ~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li-~IN~~~t~~d~~~~l~I~~ 373 (393)
+.+-|++|++--|..+.-....++.++++|+++| +.|...+.+.+.+|+.|.-
T Consensus 95 ~~~~dlvI~iS~SGeT~e~l~a~~~ak~~Ga~~IaIT~~~~S~La~~aD~~l~~ 148 (366)
T 3knz_A 95 RSGKALVVGISQGGGSLSTLAAMERARNVGHITASMAGVAPATIDRAADYILTV 148 (366)
T ss_dssp HSCSEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESSSSCGGGGGCSEECCC
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHcCCCEEEEECCCCChhhhhcCEEEec
Confidence 4788999999989988888888999999999865 5566667777777777543
No 122
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=22.61 E-value=1.9e+02 Score=24.94 Aligned_cols=47 Identities=13% Similarity=0.192 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECC
Q 016198 312 DRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNV 358 (393)
Q Consensus 312 ~~~~~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~ 358 (393)
+.++++.+.+.+++-++++|++..-..+..+......-|.++..++.
T Consensus 35 ~~l~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~ 81 (200)
T 1vim_A 35 ETVGEMIKLIDSARSIFVIGAGRSGYIAKAFAMRLMHLGYTVYVVGE 81 (200)
T ss_dssp HHHHHHHHHHHHSSCEEEECSHHHHHHHHHHHHHHHHTTCCEEETTS
T ss_pred HHHHHHHHHHhcCCEEEEEEecHHHHHHHHHHHHHHhcCCeEEEeCC
Confidence 56788888999999999999887666666666666666777766653
No 123
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=22.51 E-value=59 Score=33.10 Aligned_cols=28 Identities=25% Similarity=0.564 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeCCCcC
Q 016198 107 PSIEDINQLYQFFDNSAKLIVLTGAGIS 134 (393)
Q Consensus 107 ~~~~~l~~l~~~i~~ak~IVVlTGAGIS 134 (393)
+....+++++++|++|++.||+.|.|.+
T Consensus 186 ~~~~~i~~~~~~l~~A~rpvIl~G~g~~ 213 (549)
T 3eya_A 186 PEEEELRKLAQLLRYSSNIALMCGSGCA 213 (549)
T ss_dssp CCHHHHHHHHHHHHTCCSEEEEECGGGT
T ss_pred CCHHHHHHHHHHHHhCCCcEEEECCCch
Confidence 3467899999999999999999999985
No 124
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=22.48 E-value=1.9e+02 Score=24.67 Aligned_cols=46 Identities=15% Similarity=0.076 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEECC
Q 016198 312 DRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVNV 358 (393)
Q Consensus 312 ~~~~~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN~ 358 (393)
..++.-.++++.||+|+.+++....--++++-. |.+.|.|++.+..
T Consensus 57 ~i~~~d~~~i~~aD~vvA~l~~~d~Gt~~EiG~-A~algkPV~~l~~ 102 (152)
T 4fyk_A 57 FIHEQNLNWLQQADVVVAEVTQPSLGVGYELGR-AVALGKPILCLFR 102 (152)
T ss_dssp HHHHHHHHHHHHCSEEEEECSSCCHHHHHHHHH-HHHTTCCEEEEEC
T ss_pred HHHHHHHHHHHHCCEEEEeCCCCCCCHHHHHHH-HHHcCCeEEEEEe
Confidence 567888899999999999998555555556544 4456999888654
No 125
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=22.31 E-value=24 Score=28.57 Aligned_cols=14 Identities=21% Similarity=0.321 Sum_probs=9.8
Q ss_pred CcEEEEeCCCcCcc
Q 016198 123 AKLIVLTGAGISTE 136 (393)
Q Consensus 123 k~IVVlTGAGISas 136 (393)
.+|+++++||+|++
T Consensus 7 mkIlL~C~aGmSTs 20 (108)
T 3nbm_A 7 LKVLVLCAGSGTSA 20 (108)
T ss_dssp EEEEEEESSSSHHH
T ss_pred ceEEEECCCCCCHH
Confidence 46777777777755
No 126
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=22.19 E-value=29 Score=30.29 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=20.6
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCcCcc
Q 016198 111 DINQLYQFFDNSAKLIVLTGAGISTE 136 (393)
Q Consensus 111 ~l~~l~~~i~~ak~IVVlTGAGISas 136 (393)
..+++.++.++++.-||++|||+++.
T Consensus 39 ~p~~~~~~~~~a~~~ViIa~AG~aa~ 64 (157)
T 2ywx_A 39 TPELVEEIVKNSKADVFIAIAGLAAH 64 (157)
T ss_dssp CHHHHHHHHHHCCCSEEEEEEESSCC
T ss_pred CHHHHHHHHHhcCCCEEEEEcCchhh
Confidence 45677777887776899999999854
No 127
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=21.29 E-value=61 Score=26.62 Aligned_cols=52 Identities=23% Similarity=0.219 Sum_probs=32.4
Q ss_pred CCCCCHHHHHHHHHHhcCCccEEEEccCcchhhhcCCCceeee--cccceeecCCCCcccch
Q 016198 184 AAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLELH--GTVYTVVCLDCGFSFCR 243 (393)
Q Consensus 184 ~a~Pn~~H~~La~L~~~g~l~~ViTQNIDgLh~rAG~~~ielH--Gs~~~~~C~~C~~~~~~ 243 (393)
...+...|+.|..|++.|.+..+-.. | |...+++. ..=..+.|.+||+..+.
T Consensus 50 ~is~aTVYR~L~~L~e~Glv~~~~~~--~------~~~~Y~~~~~~~H~HliC~~Cg~v~~~ 103 (136)
T 1mzb_A 50 DVGLATVYRVLTQFEAAGLVVRHNFD--G------GHAVFELADSGHHDHMVCVDTGEVIEF 103 (136)
T ss_dssp CCCHHHHHHHHHHHHHHTSEEEECSS--S------SSCEEEESSSCCCEEEEETTTCCEEEE
T ss_pred CCCHHHHHHHHHHHHHCCcEEEEEeC--C------CceEEEeCCCCcceEEEECCCCCEEEe
Confidence 45566789999999999876543221 1 11113331 11245899999987653
No 128
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=21.25 E-value=29 Score=26.25 Aligned_cols=12 Identities=17% Similarity=0.595 Sum_probs=9.8
Q ss_pred CcCCCCCCccCCh
Q 016198 299 PTCQKCNGVLKPD 311 (393)
Q Consensus 299 P~Cp~CGg~LrP~ 311 (393)
-.|| ||..++..
T Consensus 22 ~~C~-CG~~~~~~ 33 (71)
T 1gh9_A 22 RKCV-CGRTVNVK 33 (71)
T ss_dssp EEET-TTEEEECC
T ss_pred EECC-CCCeeeec
Confidence 4699 99988876
No 129
>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; putative phosphosugar isomerase, structural genomics, joint for structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus subtilis}
Probab=21.10 E-value=45 Score=31.75 Aligned_cols=52 Identities=12% Similarity=-0.021 Sum_probs=39.7
Q ss_pred hhCCeEEEeccCcchhhHHHHHHHHHhCCCeEE-EECCCCCCCCCcccEEEEC
Q 016198 322 KECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIA-IVNVGETRADDLTTLKISA 373 (393)
Q Consensus 322 ~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li-~IN~~~t~~d~~~~l~I~~ 373 (393)
.+-|++|++--|..+.-....++.+++.|++++ +.|...+...+.+|..|.-
T Consensus 73 ~~~dlvI~iS~SG~T~e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ad~~l~~ 125 (329)
T 3eua_A 73 GEKSLVILCSHSGNTPETVKAAAFARGKGALTIAMTFKPESPLAQEAQYVAQY 125 (329)
T ss_dssp STTEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHHHHSSEEEEC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHCCCCEEEEECCCCChHHHhCCEEEEe
Confidence 467899999888888888888889999999854 5566666666666666543
No 130
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=20.69 E-value=62 Score=31.09 Aligned_cols=16 Identities=13% Similarity=0.331 Sum_probs=13.1
Q ss_pred cccceeecCCCCcccc
Q 016198 227 GTVYTVVCLDCGFSFC 242 (393)
Q Consensus 227 Gs~~~~~C~~C~~~~~ 242 (393)
+..+++.|.-|+..+.
T Consensus 204 ~G~R~l~Cs~C~t~W~ 219 (309)
T 2fiy_A 204 TGLRYLSCSLCACEWH 219 (309)
T ss_dssp CCEEEEEETTTCCEEE
T ss_pred CCcEEEEeCCCCCEEe
Confidence 5778899999998764
No 131
>1vkr_A Mannitol-specific PTS system enzyme iiabc compone; phosphotransferase, transferase, kinase, sugar transport; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1vrv_A* 2few_B*
Probab=20.68 E-value=22 Score=29.48 Aligned_cols=17 Identities=29% Similarity=0.501 Sum_probs=14.3
Q ss_pred cCCcEEEEeCCCcCccC
Q 016198 121 NSAKLIVLTGAGISTEC 137 (393)
Q Consensus 121 ~ak~IVVlTGAGISasS 137 (393)
+-++|+|.+|+||+++.
T Consensus 12 ~~kkIlvVC~sGmgTS~ 28 (125)
T 1vkr_A 12 HVRKIIVACDAGMGSSA 28 (125)
T ss_dssp CCCEEEECCSSSSHHHH
T ss_pred cccEEEEECCCcHHHHH
Confidence 45689999999999875
No 132
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=20.56 E-value=1.1e+02 Score=23.83 Aligned_cols=13 Identities=23% Similarity=0.130 Sum_probs=9.9
Q ss_pred CcCCCCCCccCCh
Q 016198 299 PTCQKCNGVLKPD 311 (393)
Q Consensus 299 P~Cp~CGg~LrP~ 311 (393)
+.||.|+..+...
T Consensus 64 ~~cP~~~~~l~~~ 76 (100)
T 2kre_A 64 PTDPFNRQTLTES 76 (100)
T ss_dssp SBCSSSCCBCCTT
T ss_pred CCCCCCCCCCChh
Confidence 5799999876644
No 133
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=20.50 E-value=2.3e+02 Score=23.73 Aligned_cols=46 Identities=15% Similarity=0.172 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhhCCeEEEeccCcchhhHHHHHHHHHhCCCeEEEEC
Q 016198 312 DRADKAMEAAKECDAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIVN 357 (393)
Q Consensus 312 ~~~~~a~~~~~~aDllLVvGTSl~V~p~~~lv~~a~~~ga~li~IN 357 (393)
+.++++.+.+.+++-++++|.+..-..+..+......-|.+...++
T Consensus 25 ~~i~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~ 70 (186)
T 1m3s_A 25 EEADQLADHILSSHQIFTAGAGRSGLMAKSFAMRLMHMGFNAHIVG 70 (186)
T ss_dssp HHHHHHHHHHHHCSCEEEECSHHHHHHHHHHHHHHHHTTCCEEETT
T ss_pred HHHHHHHHHHHcCCeEEEEecCHHHHHHHHHHHHHHhcCCeEEEeC
Confidence 5678888999999999999998765555555555556677766664
No 134
>1j5x_A Glucosamine-6-phosphate deaminase; structural genomics, TM0813, glucosamine-6-phosphate deamina PSI, protein structure initiative; 1.80A {Thermotoga maritima} SCOP: c.80.1.1
Probab=20.16 E-value=64 Score=30.80 Aligned_cols=52 Identities=10% Similarity=-0.033 Sum_probs=38.6
Q ss_pred hhC-CeEEEeccCcchhhHHHHHHHHHhCCCeEEEE-CCCCCCCCCcccEEEEC
Q 016198 322 KEC-DAFLVLGSSLMTMSAYRLVRAAHEAGSTIAIV-NVGETRADDLTTLKISA 373 (393)
Q Consensus 322 ~~a-DllLVvGTSl~V~p~~~lv~~a~~~ga~li~I-N~~~t~~d~~~~l~I~~ 373 (393)
.+- |++|++--|..+.-....++.+++.|++++.| |...+...+.+|..|.-
T Consensus 98 ~~~~dlvI~iS~SG~T~e~l~a~~~ak~~Ga~vIaIT~~~~S~La~~ad~~l~~ 151 (342)
T 1j5x_A 98 LEERGLAFLFSRTGNTTEVLLANDVLKKRNHRTIGITIEEESRLAKESDLPLVF 151 (342)
T ss_dssp CCSSEEEEEECSSSCCHHHHHHHHHHHHTTEEEEEEESCTTSHHHHHSSEEEEC
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHhcCEEEEc
Confidence 345 89999999999988889999999999886555 55555555556666543
Done!