BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016199
(393 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2V91|A Chain A, Structure Of Strictosidine Synthase In Complex With
Strictosidine
pdb|2V91|B Chain B, Structure Of Strictosidine Synthase In Complex With
Strictosidine
Length = 302
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 102/238 (42%), Gaps = 26/238 (10%)
Query: 84 GPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLV--------------HNWINTGGR 129
P +D+ +K YT +DG RV + P V N + R
Sbjct: 11 APNSFTFDSTNKGFYTSVQDG---RVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKR 67
Query: 130 PLGIAFANSDPDADRITMIVADAYKGLLKI--SGNSTVLLTDEAEGQKFKLTDGVDVAD- 186
PL + + + + D Y L + G L +G FK V V
Sbjct: 68 PLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQR 127
Query: 187 DGMIYFTDASNKYYLR--EYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSP 244
G++YFTD S Y R + I+D GRL+ +DP TKET +L+ +L+ G +S
Sbjct: 128 TGIVYFTDVSTLYDDRGVQQIMDT--SDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSA 185
Query: 245 DQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEF 302
D + ++ E + K++++G G E ++ +P P NI+ + +GH+ ++ + E
Sbjct: 186 DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVSSSEEL 241
>pdb|2FP8|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FP8|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FP9|A Chain A, Crystal Structure Of Native Strictosidine Synthase
pdb|2FP9|B Chain B, Crystal Structure Of Native Strictosidine Synthase
pdb|2FPC|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FPC|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2VAQ|A Chain A, Structure Of Strictosidine Synthase In Complex With
Inhibitor
pdb|2VAQ|B Chain B, Structure Of Strictosidine Synthase In Complex With
Inhibitor
pdb|3V1S|A Chain A, Scaffold Tailoring By A Newly Detected Pictet-Spenglerase
Ac-Tivity Of Strictosidine Synthase (Str1): From The
Common Tryp-Toline Skeleton To The Rare
Piperazino-Indole Framework
pdb|3V1S|B Chain B, Scaffold Tailoring By A Newly Detected Pictet-Spenglerase
Ac-Tivity Of Strictosidine Synthase (Str1): From The
Common Tryp-Toline Skeleton To The Rare
Piperazino-Indole Framework
Length = 322
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 103/238 (43%), Gaps = 26/238 (10%)
Query: 84 GPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLV--------------HNWINTGGR 129
P +D+ +K YT +DG RV + P V N + R
Sbjct: 20 APNSFTFDSTNKGFYTSVQDG---RVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKR 76
Query: 130 PLGIAFANSDPDADRITMIVADAYKGLLKI--SGNSTVLLTDEAEGQKFKLTDGVDVAD- 186
PL + + + + D Y L + G L +G FK V V
Sbjct: 77 PLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQR 136
Query: 187 DGMIYFTDASNKYYLR--EYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSP 244
G++YFTD S Y R + I+D + GRL+ +DP TKET +L+ +L+ G +S
Sbjct: 137 TGIVYFTDVSTLYDDRGVQQIMDTSD--KTGRLIKYDPSTKETTLLLKELHVPGGAEVSA 194
Query: 245 DQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEF 302
D + ++ E + K++++G G E ++ +P P NI+ + +GH+ ++ + E
Sbjct: 195 DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVSSSEEL 250
>pdb|2FPB|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FPB|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
Length = 322
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 99/238 (41%), Gaps = 26/238 (10%)
Query: 84 GPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLV--------------HNWINTGGR 129
P +D+ +K YT +DG RV + P V N + R
Sbjct: 20 APNSFTFDSTNKGFYTSVQDG---RVXKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKR 76
Query: 130 PLGIAFANSDPDADRITMIVADAYKGLLKI--SGNSTVLLTDEAEGQKFKLTDGVDVAD- 186
PL + + + D Y L + G L +G FK V V
Sbjct: 77 PLCGRTYDISYNLQNNQXYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQR 136
Query: 187 DGMIYFTDASNKYYLR--EYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSP 244
G++YFTD S Y R + I D + GRL +DP TKET +L +L+ G +S
Sbjct: 137 TGIVYFTDVSTLYDDRGVQQIXDTSD--KTGRLXKYDPSTKETTLLXKELHVPGGAEVSA 194
Query: 245 DQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEF 302
D + ++ E + K++++G G E ++ +P P NI+ + +GH+ ++ + E
Sbjct: 195 DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVSSSEEL 250
>pdb|4IFB|A Chain A, Crystal Structure Of Sult 2a1 Llgg Mutant With Paps
pdb|4IFB|B Chain B, Crystal Structure Of Sult 2a1 Llgg Mutant With Paps
Length = 285
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 43/89 (48%)
Query: 214 NGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVE 273
N LLS++ + ++T + + G L P++ +L+ +S + ++ + + G V+
Sbjct: 178 NFLLLSYEELKQDTGRTIEKICQFLGKTLEPEELNLILKNSSFQSMKENKMSNYSGGSVD 237
Query: 274 KFIETLPGLPDNIRYDGEGHYLIALATEF 302
++ L + D + H+ +A A +F
Sbjct: 238 YVVDKAQLLRKGVSGDWKNHFTVAQAEDF 266
>pdb|3EWK|A Chain A, Structure Of The Redox Sensor Domain Of Methylococcus
Capsulatus (Bath) Mmos
Length = 227
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 36/94 (38%), Gaps = 7/94 (7%)
Query: 135 FANSDPDADR------ITMIVADAYKGLLKISGNSTVLLTDEAEGQKFKLTDGVDVADDG 188
F N D R I ++ +A K IS + EAE Q +L +D A+
Sbjct: 64 FCNRRKDGTRYWVDSTIVPLMDNAGKPRQYISIRRDITAQKEAEAQLARLKQAMD-ANSE 122
Query: 189 MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDP 222
MI TD + + L F G G LL P
Sbjct: 123 MILLTDRAGRIIYANPALCRFSGMAEGELLGQSP 156
>pdb|2DSO|A Chain A, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|B Chain B, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|C Chain C, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|D Chain D, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|E Chain E, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|F Chain F, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
Length = 333
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 16/120 (13%)
Query: 176 FKLTDGVDVA----DDGMIYFTDASNKYYLREYILDI--------FEG---KPNGRLLSF 220
FK T G+ A D+ D S Y + + + D F G P G +
Sbjct: 108 FKSTGGIFAATENGDNLQDIIEDLSTAYCINDMVFDSKGGFYFTDFRGYSTNPLGGVYYV 167
Query: 221 DPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLP 280
P + ++ ++ ANG+ LS D+ L ET+ R + ++ + ++ F T+P
Sbjct: 168 SPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALE-DDGVTIQPFGATIP 226
>pdb|2DG1|A Chain A, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|B Chain B, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|C Chain C, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|D Chain D, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|E Chain E, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|F Chain F, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
Length = 333
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 187 DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQ 246
D M++ D+ +Y ++ + P G + P + ++ ++ ANG+ LS D+
Sbjct: 138 DDMVF--DSKGGFYFTDF--RGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDE 193
Query: 247 THLVYCETSMRRCRKFYIKGKNAGRVEKFIETLP 280
L ET+ R + ++ + ++ F T+P
Sbjct: 194 KVLWVTETTANRLHRIALE-DDGVTIQPFGATIP 226
>pdb|2DG0|A Chain A, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|B Chain B, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|C Chain C, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|D Chain D, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|E Chain E, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|F Chain F, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|G Chain G, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|H Chain H, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|I Chain I, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|J Chain J, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|K Chain K, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|L Chain L, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
Length = 333
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Query: 188 GMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQT 247
G YFTD R Y + P G + P + ++ ++ ANG+ LS D+
Sbjct: 146 GGFYFTD------FRGYSTN-----PLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEK 194
Query: 248 HLVYCETSMRRCRKFYIKGKNAGRVEKFIETLP 280
L ET+ R + ++ + ++ F T+P
Sbjct: 195 VLWVTETTANRLHRIALE-DDGVTIQPFGATIP 226
>pdb|1J99|A Chain A, Crystal Structure Of Human Dehydroepiandrosterone
Sulfotransferase In Complex With Substrate
Length = 293
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/89 (19%), Positives = 42/89 (47%)
Query: 214 NGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVE 273
N LLS++ + ++T + + G L P++ +L+ +S + ++ + + V+
Sbjct: 186 NFLLLSYEELKQDTGRTIEKICQFLGKTLEPEELNLILKNSSFQSMKENKMSNYSLLSVD 245
Query: 274 KFIETLPGLPDNIRYDGEGHYLIALATEF 302
++ L + D + H+ +A A +F
Sbjct: 246 YVVDKTQLLRKGVSGDWKNHFTVAQAEDF 274
>pdb|1EFH|A Chain A, Crystal Structure Of The Human Hydroxysteroid
Sulfotransferase In The Presence Of Pap
pdb|1EFH|B Chain B, Crystal Structure Of The Human Hydroxysteroid
Sulfotransferase In The Presence Of Pap
Length = 292
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/91 (18%), Positives = 43/91 (47%)
Query: 212 KPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGR 271
+ N LLS++ + ++T + + G L P++ +L+ +S + ++ + +
Sbjct: 176 EKNFLLLSYEELKQDTGRTIEKICQFLGKTLEPEELNLILKNSSFQSMKENKMSNYSLLS 235
Query: 272 VEKFIETLPGLPDNIRYDGEGHYLIALATEF 302
V+ ++ L + D + H+ +A A +F
Sbjct: 236 VDYVVDKAQLLRKGVSGDWKNHFTVAQAEDF 266
>pdb|1OV4|A Chain A, Crystal Structure Of Human Dhea-st Complexed With
Androsterone
Length = 293
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 17/89 (19%), Positives = 42/89 (47%)
Query: 214 NGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVE 273
N LLS++ + ++T + + G L P++ +L+ +S + ++ + + V+
Sbjct: 186 NFLLLSYEELKQDTGRTIEKICQFLGKTLEPEELNLILKNSSFQSMKENKMSNYSLLSVD 245
Query: 274 KFIETLPGLPDNIRYDGEGHYLIALATEF 302
++ L + D + H+ +A A +F
Sbjct: 246 YVVDKTQLLRKGVSGDWKNHFTVAQAEDF 274
>pdb|2QP3|A Chain A, Identification And Characterization Of Two Amino Acids
Critical For The Substrate Inhibition Of Sult2a1
Length = 284
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/89 (19%), Positives = 42/89 (47%)
Query: 214 NGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVE 273
N LLS++ + ++T + + G L P++ +L+ +S + ++ + + V+
Sbjct: 177 NFLLLSYEELKQDTGRTIEKICQFLGKTLEPEELNLILKNSSFQSMKENKMSNYSLLSVD 236
Query: 274 KFIETLPGLPDNIRYDGEGHYLIALATEF 302
++ L + D + H+ +A A +F
Sbjct: 237 YVVDKTQLLRKGVSGDWKNHFTVAQAEDF 265
>pdb|2QP4|A Chain A, Identification And Characterization Of Two Amino Acids
Critical For The Substrate Inhibition Of Sult2a1
Length = 284
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/89 (19%), Positives = 42/89 (47%)
Query: 214 NGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVE 273
N LLS++ + ++T + + G L P++ +L+ +S + ++ + + V+
Sbjct: 177 NFLLLSYEELKQDTGRTIEKICQFLGKTLEPEELNLILKNSSFQSMKENKMSNYSLLSVD 236
Query: 274 KFIETLPGLPDNIRYDGEGHYLIALATEF 302
++ L + D + H+ +A A +F
Sbjct: 237 YVVDKTQLLRKGVSGDWKNHFTVAQAEDF 265
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,799,791
Number of Sequences: 62578
Number of extensions: 574328
Number of successful extensions: 1154
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1133
Number of HSP's gapped (non-prelim): 16
length of query: 393
length of database: 14,973,337
effective HSP length: 101
effective length of query: 292
effective length of database: 8,652,959
effective search space: 2526664028
effective search space used: 2526664028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)