Query 016199
Match_columns 393
No_of_seqs 256 out of 1868
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 04:42:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016199.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016199hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1520 Predicted alkaloid syn 100.0 6.9E-53 1.5E-57 392.7 29.2 342 39-385 20-376 (376)
2 PF08450 SGL: SMP-30/Gluconola 100.0 1.1E-26 2.3E-31 214.8 26.1 232 85-374 2-245 (246)
3 COG3386 Gluconolactonase [Carb 100.0 4.4E-26 9.5E-31 214.7 30.0 253 68-378 17-279 (307)
4 PF03088 Str_synth: Strictosid 99.8 4.3E-21 9.3E-26 146.2 8.7 88 180-267 1-89 (89)
5 COG4257 Vgb Streptogramin lyas 99.8 6.5E-18 1.4E-22 150.8 22.2 238 83-387 62-307 (353)
6 PLN02919 haloacid dehalogenase 99.7 3.7E-15 7.9E-20 162.3 33.3 247 79-388 564-891 (1057)
7 COG4257 Vgb Streptogramin lyas 99.6 5.4E-13 1.2E-17 119.5 24.0 243 71-384 92-346 (353)
8 PF10282 Lactonase: Lactonase, 99.6 1.6E-12 3.5E-17 126.1 28.1 261 68-385 24-322 (345)
9 PRK11028 6-phosphogluconolacto 99.6 7.1E-12 1.5E-16 120.8 30.5 256 69-385 23-304 (330)
10 PLN02919 haloacid dehalogenase 99.5 2.7E-12 5.8E-17 140.2 27.5 189 82-301 623-879 (1057)
11 KOG4499 Ca2+-binding protein R 99.5 4.6E-12 9.9E-17 111.2 21.2 234 88-374 20-274 (310)
12 COG2706 3-carboxymuconate cycl 99.5 7.6E-11 1.6E-15 109.5 28.8 261 69-387 28-323 (346)
13 PF08450 SGL: SMP-30/Gluconola 99.5 8.4E-12 1.8E-16 115.2 21.3 185 130-385 2-213 (246)
14 TIGR02604 Piru_Ver_Nterm putat 99.4 1.7E-10 3.7E-15 112.9 28.5 172 81-262 12-210 (367)
15 PF10282 Lactonase: Lactonase, 99.4 1.8E-10 3.9E-15 111.8 27.9 209 69-300 74-312 (345)
16 TIGR03866 PQQ_ABC_repeats PQQ- 99.4 2E-09 4.3E-14 101.0 31.2 248 83-392 31-286 (300)
17 PRK11028 6-phosphogluconolacto 99.3 9.9E-10 2.1E-14 105.8 26.1 192 83-299 80-292 (330)
18 COG2706 3-carboxymuconate cycl 99.3 1.8E-09 4E-14 100.4 26.4 210 69-302 76-312 (346)
19 TIGR03866 PQQ_ABC_repeats PQQ- 99.1 1.8E-07 3.9E-12 87.6 29.7 225 97-388 3-240 (300)
20 KOG1520 Predicted alkaloid syn 99.1 4.1E-09 9E-14 99.7 16.7 170 74-299 45-237 (376)
21 TIGR02658 TTQ_MADH_Hv methylam 99.1 3E-07 6.6E-12 88.4 28.1 260 95-393 13-338 (352)
22 PF07995 GSDH: Glucose / Sorbo 99.0 2.3E-08 4.9E-13 96.4 18.5 159 83-253 2-199 (331)
23 COG3391 Uncharacterized conser 99.0 2.4E-07 5.1E-12 91.2 24.7 186 83-299 74-271 (381)
24 COG3391 Uncharacterized conser 99.0 7.8E-07 1.7E-11 87.5 28.2 245 84-388 32-286 (381)
25 PF03022 MRJP: Major royal jel 99.0 2E-07 4.4E-12 87.8 23.0 188 130-375 3-255 (287)
26 COG3386 Gluconolactonase [Carb 99.0 5.1E-08 1.1E-12 92.4 18.7 149 81-257 109-278 (307)
27 TIGR02604 Piru_Ver_Nterm putat 98.9 1E-07 2.2E-12 93.3 18.4 182 176-382 13-210 (367)
28 COG3292 Predicted periplasmic 98.9 9.1E-08 2E-12 94.0 16.2 143 87-265 169-317 (671)
29 cd00200 WD40 WD40 domain, foun 98.8 6.5E-06 1.4E-10 75.0 27.7 179 86-299 55-238 (289)
30 cd00200 WD40 WD40 domain, foun 98.8 7.2E-06 1.6E-10 74.7 27.6 182 84-299 11-197 (289)
31 PF02239 Cytochrom_D1: Cytochr 98.8 1.1E-06 2.4E-11 85.8 20.4 254 85-391 39-308 (369)
32 PF06977 SdiA-regulated: SdiA- 98.7 2.9E-06 6.2E-11 77.9 21.5 194 79-299 18-240 (248)
33 COG3292 Predicted periplasmic 98.7 2.2E-07 4.8E-12 91.4 14.5 194 88-299 211-437 (671)
34 PRK05137 tolB translocation pr 98.7 2.5E-05 5.5E-10 78.3 29.8 159 105-296 183-349 (435)
35 PRK04792 tolB translocation pr 98.7 1.5E-05 3.2E-10 80.2 26.3 174 87-294 222-406 (448)
36 KOG0291 WD40-repeat-containing 98.7 1.6E-05 3.5E-10 80.5 24.9 192 82-306 350-547 (893)
37 KOG4659 Uncharacterized conser 98.6 1.1E-05 2.5E-10 85.6 23.7 223 86-348 410-721 (1899)
38 KOG0318 WD40 repeat stress pro 98.6 5.2E-05 1.1E-09 74.1 26.3 191 75-302 313-509 (603)
39 PRK04922 tolB translocation pr 98.6 2.7E-05 5.9E-10 78.0 25.9 176 87-296 208-394 (433)
40 PRK02889 tolB translocation pr 98.6 3.9E-05 8.5E-10 76.7 26.8 177 87-297 200-387 (427)
41 COG3204 Uncharacterized protei 98.6 3.8E-05 8.2E-10 70.5 23.7 189 83-299 86-302 (316)
42 KOG1446 Histone H3 (Lys4) meth 98.6 0.00027 5.8E-09 65.2 29.0 243 83-390 15-267 (311)
43 KOG4659 Uncharacterized conser 98.6 1.5E-05 3.3E-10 84.7 23.7 185 81-302 363-614 (1899)
44 PRK03629 tolB translocation pr 98.6 0.00016 3.5E-09 72.4 30.1 140 129-297 200-347 (429)
45 KOG1214 Nidogen and related ba 98.6 2.6E-06 5.6E-11 86.8 16.6 186 83-301 1025-1217(1289)
46 PRK00178 tolB translocation pr 98.6 7.5E-05 1.6E-09 74.7 27.1 177 86-296 202-389 (430)
47 PF02239 Cytochrom_D1: Cytochr 98.5 8.1E-05 1.8E-09 72.8 26.5 174 95-299 6-190 (369)
48 PRK04792 tolB translocation pr 98.5 0.00017 3.6E-09 72.6 29.3 139 130-297 220-366 (448)
49 PRK04922 tolB translocation pr 98.5 0.00013 2.8E-09 73.2 28.3 138 130-296 206-351 (433)
50 PRK05137 tolB translocation pr 98.5 8.2E-05 1.8E-09 74.6 27.0 176 86-295 205-391 (435)
51 PRK03629 tolB translocation pr 98.5 9E-05 2E-09 74.1 26.6 179 87-299 203-392 (429)
52 KOG0315 G-protein beta subunit 98.5 7.7E-05 1.7E-09 66.7 22.7 188 79-299 80-277 (311)
53 TIGR03606 non_repeat_PQQ dehyd 98.5 1.8E-05 3.8E-10 78.6 20.5 179 74-256 22-250 (454)
54 PRK02889 tolB translocation pr 98.5 0.00029 6.3E-09 70.5 28.4 138 130-296 198-343 (427)
55 PRK00178 tolB translocation pr 98.4 0.00047 1E-08 69.0 29.4 138 130-296 201-346 (430)
56 PRK04043 tolB translocation pr 98.4 0.00025 5.3E-09 70.7 26.9 198 87-352 192-408 (419)
57 TIGR02800 propeller_TolB tol-p 98.4 0.00026 5.7E-09 70.2 26.7 175 87-295 194-379 (417)
58 TIGR02658 TTQ_MADH_Hv methylam 98.4 0.0004 8.7E-09 67.0 26.6 199 83-351 105-338 (352)
59 KOG0279 G protein beta subunit 98.4 0.00042 9.2E-09 63.0 24.3 198 72-301 53-253 (315)
60 PRK01742 tolB translocation pr 98.4 0.00018 4E-09 71.9 24.8 175 86-299 207-390 (429)
61 PF01731 Arylesterase: Arylest 98.4 5.3E-06 1.1E-10 63.0 9.8 83 180-265 1-84 (86)
62 TIGR02800 propeller_TolB tol-p 98.3 0.0013 2.8E-08 65.3 28.8 162 105-299 171-340 (417)
63 TIGR03032 conserved hypothetic 98.3 0.00022 4.7E-09 66.5 20.2 197 82-303 48-264 (335)
64 TIGR03606 non_repeat_PQQ dehyd 98.3 9.7E-05 2.1E-09 73.4 19.3 109 176-301 29-166 (454)
65 PRK01029 tolB translocation pr 98.3 0.0011 2.3E-08 66.4 27.1 178 87-296 189-386 (428)
66 TIGR03300 assembly_YfgL outer 98.2 0.0025 5.5E-08 62.5 28.9 218 88-387 61-299 (377)
67 PRK04043 tolB translocation pr 98.2 0.0035 7.5E-08 62.5 29.8 159 105-299 170-337 (419)
68 PRK02888 nitrous-oxide reducta 98.2 0.00025 5.5E-09 72.2 20.8 176 90-301 200-395 (635)
69 COG2133 Glucose/sorbosone dehy 98.2 0.0027 5.9E-08 61.9 27.1 175 74-259 59-263 (399)
70 KOG0279 G protein beta subunit 98.2 0.0027 5.8E-08 57.9 24.4 228 95-389 29-266 (315)
71 PF07995 GSDH: Glucose / Sorbo 98.2 3E-05 6.5E-10 74.8 13.1 161 177-377 2-203 (331)
72 PRK01742 tolB translocation pr 98.2 0.0017 3.6E-08 65.0 26.0 137 129-297 205-349 (429)
73 PRK11138 outer membrane biogen 98.1 0.0021 4.5E-08 63.6 25.7 214 96-384 162-393 (394)
74 PRK11138 outer membrane biogen 98.1 0.0014 3E-08 64.9 24.1 219 95-387 121-355 (394)
75 KOG0318 WD40 repeat stress pro 98.1 0.0041 8.9E-08 61.2 26.2 186 84-299 192-424 (603)
76 PF03022 MRJP: Major royal jel 98.1 0.00056 1.2E-08 64.6 20.2 192 87-300 5-255 (287)
77 KOG1214 Nidogen and related ba 98.1 0.00041 9E-09 71.3 20.0 220 102-385 997-1226(1289)
78 TIGR03300 assembly_YfgL outer 98.1 0.0019 4.1E-08 63.3 24.4 125 213-382 249-376 (377)
79 KOG0266 WD40 repeat-containing 98.1 0.0025 5.5E-08 64.3 25.6 186 86-301 163-355 (456)
80 PF06977 SdiA-regulated: SdiA- 98.1 0.0017 3.8E-08 59.7 21.8 193 128-382 22-247 (248)
81 KOG2055 WD40 repeat protein [G 98.1 0.00073 1.6E-08 65.3 19.7 188 84-301 215-407 (514)
82 PRK01029 tolB translocation pr 98.0 0.0093 2E-07 59.7 28.0 222 105-387 166-405 (428)
83 KOG2106 Uncharacterized conser 98.0 0.0026 5.5E-08 62.3 22.6 147 85-263 249-396 (626)
84 KOG0272 U4/U6 small nuclear ri 98.0 0.00053 1.1E-08 65.5 17.6 186 80-301 215-409 (459)
85 PF03088 Str_synth: Strictosid 98.0 2.9E-05 6.2E-10 59.4 7.5 58 238-299 1-75 (89)
86 KOG1446 Histone H3 (Lys4) meth 98.0 0.013 2.9E-07 54.2 27.3 185 82-301 56-253 (311)
87 PF13360 PQQ_2: PQQ-like domai 98.0 0.0082 1.8E-07 54.4 25.2 184 134-389 32-234 (238)
88 KOG0266 WD40 repeat-containing 98.0 0.0032 6.9E-08 63.6 24.3 156 79-265 200-364 (456)
89 PF05096 Glu_cyclase_2: Glutam 97.9 0.0021 4.5E-08 59.1 19.6 151 83-264 90-260 (264)
90 PF13360 PQQ_2: PQQ-like domai 97.9 0.0086 1.9E-07 54.3 23.6 172 89-298 32-219 (238)
91 KOG0315 G-protein beta subunit 97.9 0.0068 1.5E-07 54.5 21.5 182 97-309 13-197 (311)
92 PTZ00421 coronin; Provisional 97.9 0.031 6.6E-07 56.9 28.7 160 83-265 76-245 (493)
93 KOG0275 Conserved WD40 repeat- 97.8 0.001 2.2E-08 61.6 16.0 229 79-372 210-455 (508)
94 PLN00181 protein SPA1-RELATED; 97.8 0.039 8.6E-07 59.7 30.8 156 85-266 486-649 (793)
95 KOG0289 mRNA splicing factor [ 97.8 0.012 2.5E-07 56.8 23.1 183 85-299 264-451 (506)
96 KOG0286 G-protein beta subunit 97.8 0.029 6.2E-07 51.7 27.2 192 76-299 49-248 (343)
97 COG4946 Uncharacterized protei 97.8 0.011 2.3E-07 57.8 22.4 79 216-299 383-461 (668)
98 KOG0263 Transcription initiati 97.8 0.0072 1.6E-07 62.0 22.0 190 83-300 379-597 (707)
99 PF07433 DUF1513: Protein of u 97.7 0.014 3.1E-07 54.8 22.2 185 88-299 56-275 (305)
100 PF14583 Pectate_lyase22: Olig 97.7 0.012 2.6E-07 57.0 21.5 168 89-267 42-226 (386)
101 KOG2055 WD40 repeat protein [G 97.7 0.0036 7.9E-08 60.6 17.7 176 87-295 262-450 (514)
102 KOG1539 WD repeat protein [Gen 97.7 0.0016 3.4E-08 67.2 16.1 185 83-301 449-638 (910)
103 KOG4649 PQQ (pyrrolo-quinoline 97.7 0.012 2.6E-07 53.4 19.7 64 89-163 100-166 (354)
104 PF05096 Glu_cyclase_2: Glutam 97.7 0.0046 9.9E-08 56.9 17.4 158 177-391 45-209 (264)
105 KOG0271 Notchless-like WD40 re 97.7 0.0085 1.8E-07 56.9 19.2 104 79-193 154-264 (480)
106 PRK13684 Ycf48-like protein; P 97.7 0.065 1.4E-06 51.8 26.3 178 84-299 47-233 (334)
107 PTZ00420 coronin; Provisional 97.6 0.092 2E-06 54.2 28.2 159 80-265 72-248 (568)
108 KOG0285 Pleiotropic regulator 97.6 0.019 4E-07 54.3 20.4 159 77-265 146-307 (460)
109 KOG4499 Ca2+-binding protein R 97.6 0.00085 1.8E-08 59.8 11.0 110 90-227 116-245 (310)
110 TIGR03032 conserved hypothetic 97.6 0.043 9.4E-07 51.5 22.7 175 125-372 46-258 (335)
111 KOG0278 Serine/threonine kinas 97.6 0.0066 1.4E-07 54.6 16.4 149 85-264 146-296 (334)
112 KOG0282 mRNA splicing factor [ 97.5 0.0025 5.4E-08 62.0 14.4 190 83-300 259-452 (503)
113 PF07433 DUF1513: Protein of u 97.5 0.068 1.5E-06 50.3 23.4 109 127-254 4-118 (305)
114 KOG4649 PQQ (pyrrolo-quinoline 97.5 0.073 1.6E-06 48.5 22.0 140 94-265 23-165 (354)
115 KOG0294 WD40 repeat-containing 97.5 0.089 1.9E-06 49.0 22.8 179 88-299 49-227 (362)
116 KOG0271 Notchless-like WD40 re 97.4 0.0075 1.6E-07 57.3 15.8 198 71-298 236-469 (480)
117 COG4946 Uncharacterized protei 97.4 0.0095 2.1E-07 58.1 16.7 132 96-253 373-507 (668)
118 KOG0291 WD40-repeat-containing 97.4 0.16 3.4E-06 52.6 26.0 177 88-300 313-498 (893)
119 KOG0639 Transducin-like enhanc 97.4 0.0091 2E-07 58.6 16.5 154 88-266 425-582 (705)
120 KOG0293 WD40 repeat-containing 97.4 0.0079 1.7E-07 57.6 15.6 159 79-266 266-426 (519)
121 KOG0289 mRNA splicing factor [ 97.4 0.0059 1.3E-07 58.8 14.6 146 85-262 350-502 (506)
122 PF14870 PSII_BNR: Photosynthe 97.4 0.08 1.7E-06 50.2 22.0 178 83-299 17-205 (302)
123 COG3490 Uncharacterized protei 97.4 0.043 9.2E-07 50.6 19.1 107 127-254 67-181 (366)
124 cd00216 PQQ_DH Dehydrogenases 97.4 0.21 4.5E-06 51.0 26.8 257 95-388 111-427 (488)
125 KOG0286 G-protein beta subunit 97.3 0.12 2.7E-06 47.6 24.8 185 87-300 102-293 (343)
126 PTZ00421 coronin; Provisional 97.3 0.058 1.2E-06 54.9 22.0 162 83-267 126-292 (493)
127 KOG0296 Angio-associated migra 97.3 0.14 2.9E-06 48.7 22.3 241 82-384 148-397 (399)
128 KOG1407 WD40 repeat protein [F 97.3 0.12 2.6E-06 47.1 21.0 192 80-307 18-217 (313)
129 KOG0275 Conserved WD40 repeat- 97.3 0.0049 1.1E-07 57.2 12.5 180 86-299 267-456 (508)
130 KOG1273 WD40 repeat protein [G 97.3 0.17 3.6E-06 47.3 22.8 190 82-299 65-268 (405)
131 KOG0263 Transcription initiati 97.3 0.015 3.3E-07 59.7 16.7 187 86-309 455-649 (707)
132 COG1520 FOG: WD40-like repeat 97.2 0.14 3.1E-06 50.1 23.3 142 90-265 65-217 (370)
133 TIGR03118 PEPCTERM_chp_1 conse 97.2 0.074 1.6E-06 49.7 19.4 223 129-386 24-280 (336)
134 PF05787 DUF839: Bacterial pro 97.2 0.036 7.7E-07 56.7 19.2 126 173-299 346-521 (524)
135 PF08662 eIF2A: Eukaryotic tra 97.2 0.077 1.7E-06 47.0 19.2 134 105-267 40-181 (194)
136 KOG0316 Conserved WD40 repeat- 97.2 0.11 2.4E-06 46.7 19.4 177 86-298 21-201 (307)
137 KOG0273 Beta-transducin family 97.2 0.22 4.8E-06 48.7 23.0 232 83-385 276-523 (524)
138 KOG1274 WD40 repeat protein [G 97.2 0.12 2.6E-06 54.3 22.5 172 93-298 65-250 (933)
139 KOG2048 WD40 repeat protein [G 97.2 0.035 7.6E-07 56.4 18.1 155 87-266 387-549 (691)
140 PRK02888 nitrous-oxide reducta 97.2 0.062 1.3E-06 55.3 20.2 107 242-386 284-405 (635)
141 PTZ00420 coronin; Provisional 97.2 0.07 1.5E-06 55.0 20.7 159 83-266 126-294 (568)
142 KOG1274 WD40 repeat protein [G 97.1 0.33 7.2E-06 51.2 24.9 150 85-266 16-169 (933)
143 PF01436 NHL: NHL repeat; Int 97.1 0.00098 2.1E-08 39.3 4.0 28 234-262 1-28 (28)
144 PF13449 Phytase-like: Esteras 97.1 0.037 8.1E-07 53.3 17.4 171 86-265 23-251 (326)
145 KOG0272 U4/U6 small nuclear ri 97.1 0.014 3.1E-07 56.0 13.9 189 83-302 262-452 (459)
146 KOG0293 WD40 repeat-containing 97.1 0.036 7.7E-07 53.3 16.0 143 128-299 225-373 (519)
147 PLN00181 protein SPA1-RELATED; 97.0 0.68 1.5E-05 50.2 30.0 181 85-300 535-728 (793)
148 KOG0282 mRNA splicing factor [ 97.0 0.016 3.5E-07 56.5 13.6 156 83-266 300-463 (503)
149 KOG0301 Phospholipase A2-activ 97.0 0.13 2.8E-06 52.6 20.2 214 93-381 70-283 (745)
150 KOG2096 WD40 repeat protein [G 97.0 0.31 6.8E-06 45.6 20.8 150 83-255 87-249 (420)
151 PF06433 Me-amine-dh_H: Methyl 97.0 0.12 2.5E-06 49.4 18.6 142 95-265 3-165 (342)
152 KOG0772 Uncharacterized conser 96.9 0.097 2.1E-06 51.8 18.2 203 83-308 168-393 (641)
153 KOG0772 Uncharacterized conser 96.9 0.21 4.6E-06 49.5 20.4 185 86-299 218-428 (641)
154 COG3823 Glutamine cyclotransfe 96.9 0.031 6.7E-07 49.2 13.2 100 130-254 133-248 (262)
155 KOG0310 Conserved WD40 repeat- 96.9 0.21 4.7E-06 49.0 20.2 194 87-312 31-228 (487)
156 KOG0283 WD40 repeat-containing 96.9 0.032 6.8E-07 57.8 15.3 156 83-267 410-578 (712)
157 PF05787 DUF839: Bacterial pro 96.9 0.013 2.9E-07 59.8 12.6 78 174-252 433-519 (524)
158 KOG0284 Polyadenylation factor 96.9 0.037 8E-07 53.1 14.3 177 87-299 101-283 (464)
159 KOG0640 mRNA cleavage stimulat 96.9 0.061 1.3E-06 50.0 15.2 143 86-251 176-322 (430)
160 PF08662 eIF2A: Eukaryotic tra 96.9 0.12 2.6E-06 45.7 17.1 98 179-299 62-162 (194)
161 COG2133 Glucose/sorbosone dehy 96.8 0.25 5.4E-06 48.5 20.2 165 131-301 180-387 (399)
162 COG3204 Uncharacterized protei 96.8 0.44 9.4E-06 44.4 20.8 195 129-385 87-312 (316)
163 KOG2106 Uncharacterized conser 96.8 0.35 7.5E-06 47.9 20.4 147 85-267 332-479 (626)
164 COG3211 PhoX Predicted phospha 96.8 0.011 2.5E-07 59.1 10.6 74 175-254 498-573 (616)
165 cd00216 PQQ_DH Dehydrogenases 96.7 0.82 1.8E-05 46.6 25.3 42 336-377 416-459 (488)
166 PF02333 Phytase: Phytase; In 96.7 0.23 5E-06 48.4 19.1 133 215-385 129-290 (381)
167 KOG0278 Serine/threonine kinas 96.7 0.054 1.2E-06 49.0 13.4 177 86-299 104-286 (334)
168 KOG0283 WD40 repeat-containing 96.7 0.3 6.4E-06 50.9 20.6 109 130-268 372-484 (712)
169 COG0823 TolB Periplasmic compo 96.7 0.24 5.3E-06 49.4 19.7 148 89-265 199-358 (425)
170 smart00135 LY Low-density lipo 96.7 0.0066 1.4E-07 39.1 5.7 38 230-267 4-41 (43)
171 KOG0292 Vesicle coat complex C 96.7 0.35 7.6E-06 51.1 20.5 132 80-254 248-385 (1202)
172 KOG0646 WD40 repeat protein [G 96.5 0.25 5.5E-06 48.2 17.6 148 87-265 86-247 (476)
173 KOG0646 WD40 repeat protein [G 96.5 0.25 5.4E-06 48.3 17.4 161 81-266 122-308 (476)
174 KOG1538 Uncharacterized conser 96.5 1.3 2.7E-05 45.6 23.0 233 84-384 14-292 (1081)
175 PF01436 NHL: NHL repeat; Int 96.5 0.005 1.1E-07 36.2 3.8 18 177-194 2-19 (28)
176 COG3490 Uncharacterized protei 96.5 0.16 3.5E-06 46.9 15.0 186 90-301 121-340 (366)
177 KOG0296 Angio-associated migra 96.4 0.91 2E-05 43.3 22.9 147 87-265 69-220 (399)
178 KOG0292 Vesicle coat complex C 96.4 0.88 1.9E-05 48.2 21.5 153 86-267 13-167 (1202)
179 PF13449 Phytase-like: Esteras 96.4 0.2 4.4E-06 48.2 16.4 111 178-299 86-233 (326)
180 KOG0639 Transducin-like enhanc 96.3 0.14 3.1E-06 50.5 14.7 179 88-301 471-654 (705)
181 KOG0281 Beta-TrCP (transducin 96.3 0.11 2.3E-06 49.2 13.2 180 93-308 246-427 (499)
182 PF08553 VID27: VID27 cytoplas 96.3 0.13 2.9E-06 54.6 15.6 162 80-264 478-646 (794)
183 KOG0265 U5 snRNP-specific prot 96.3 0.94 2E-05 42.2 21.6 165 88-266 53-247 (338)
184 KOG0319 WD40-repeat-containing 96.3 0.29 6.3E-06 50.5 17.2 153 85-265 65-222 (775)
185 PF06433 Me-amine-dh_H: Methyl 96.3 0.21 4.6E-06 47.7 15.2 147 188-386 3-166 (342)
186 PRK13616 lipoprotein LpqB; Pro 96.2 2 4.4E-05 44.8 23.5 158 181-383 401-565 (591)
187 COG3211 PhoX Predicted phospha 96.1 0.76 1.6E-05 46.5 18.5 128 173-302 413-576 (616)
188 KOG0771 Prolactin regulatory e 96.0 0.22 4.8E-06 48.0 13.9 184 86-298 148-342 (398)
189 KOG0308 Conserved WD40 repeat- 96.0 0.23 4.9E-06 50.6 14.5 186 93-312 36-246 (735)
190 KOG4328 WD40 protein [Function 95.9 1.1 2.5E-05 43.8 18.4 232 87-382 239-492 (498)
191 KOG0273 Beta-transducin family 95.9 2.1 4.5E-05 42.3 22.9 150 83-264 236-388 (524)
192 KOG0268 Sof1-like rRNA process 95.9 0.27 5.8E-06 46.8 13.6 184 80-302 64-251 (433)
193 KOG0299 U3 snoRNP-associated p 95.8 2.1 4.5E-05 42.1 20.2 149 86-267 206-358 (479)
194 KOG4378 Nuclear protein COP1 [ 95.8 0.58 1.3E-05 46.3 16.1 102 146-268 178-283 (673)
195 KOG0319 WD40-repeat-containing 95.8 1.2 2.5E-05 46.2 18.8 103 83-193 105-209 (775)
196 KOG1539 WD repeat protein [Gen 95.8 2.9 6.3E-05 44.1 21.7 146 128-299 449-595 (910)
197 KOG1036 Mitotic spindle checkp 95.8 1.3 2.8E-05 41.4 17.4 145 86-266 17-164 (323)
198 KOG2048 WD40 repeat protein [G 95.7 2.9 6.3E-05 43.0 22.7 150 85-265 28-184 (691)
199 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.7 3.1 6.7E-05 42.9 22.9 111 95-227 70-193 (527)
200 KOG0641 WD40 repeat protein [G 95.7 1.5 3.3E-05 39.2 17.4 77 175-269 230-307 (350)
201 KOG2139 WD40 repeat protein [G 95.6 2.2 4.7E-05 40.8 25.9 258 72-386 130-432 (445)
202 KOG0645 WD40 repeat protein [G 95.6 1.8 3.9E-05 39.8 21.6 150 87-265 19-180 (312)
203 KOG0645 WD40 repeat protein [G 95.5 1.9 4.2E-05 39.6 17.8 158 75-261 54-221 (312)
204 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.5 3.5 7.6E-05 42.5 24.3 54 336-389 271-337 (527)
205 PRK13684 Ycf48-like protein; P 95.4 2.7 5.8E-05 40.6 24.7 213 97-384 102-330 (334)
206 PF14269 Arylsulfotran_2: Aryl 95.3 0.69 1.5E-05 43.9 14.6 125 177-352 144-297 (299)
207 KOG0973 Histone transcription 95.3 0.55 1.2E-05 50.4 14.9 148 85-257 72-242 (942)
208 KOG0299 U3 snoRNP-associated p 95.2 1.3 2.8E-05 43.4 16.2 149 92-265 296-456 (479)
209 KOG2321 WD40 repeat protein [G 95.2 4 8.7E-05 41.4 20.5 176 179-374 136-333 (703)
210 KOG0303 Actin-binding protein 95.1 1.1 2.3E-05 43.3 15.0 153 88-267 137-296 (472)
211 KOG1407 WD40 repeat protein [F 95.1 2.6 5.6E-05 38.6 18.1 101 178-300 66-167 (313)
212 KOG0288 WD40 repeat protein Ti 95.1 1.1 2.4E-05 43.4 15.0 130 97-253 314-450 (459)
213 COG3823 Glutamine cyclotransfe 95.1 2.3 5.1E-05 37.8 16.8 131 215-386 111-260 (262)
214 PLN00033 photosystem II stabil 95.0 4 8.7E-05 40.4 28.9 58 239-300 243-300 (398)
215 KOG0643 Translation initiation 95.0 2.9 6.2E-05 38.5 18.3 162 73-265 41-220 (327)
216 KOG4378 Nuclear protein COP1 [ 95.0 0.84 1.8E-05 45.3 14.2 83 213-299 185-269 (673)
217 KOG2919 Guanine nucleotide-bin 94.9 3.4 7.5E-05 39.0 17.2 135 216-387 134-283 (406)
218 COG1520 FOG: WD40-like repeat 94.8 4.3 9.3E-05 39.6 26.3 107 93-227 111-221 (370)
219 KOG1272 WD40-repeat-containing 94.8 0.37 8E-06 47.3 11.2 197 67-302 112-315 (545)
220 KOG0640 mRNA cleavage stimulat 94.8 2.1 4.6E-05 40.1 15.6 190 83-300 217-416 (430)
221 KOG2096 WD40 repeat protein [G 94.8 1 2.3E-05 42.3 13.6 147 178-376 88-249 (420)
222 PF14517 Tachylectin: Tachylec 94.7 0.97 2.1E-05 40.8 12.9 165 71-264 23-205 (229)
223 KOG2110 Uncharacterized conser 94.6 3.2 6.9E-05 39.8 16.6 149 83-265 85-248 (391)
224 KOG0650 WD40 repeat nucleolar 94.6 3.9 8.4E-05 41.7 17.9 233 77-387 395-639 (733)
225 KOG0285 Pleiotropic regulator 94.6 2.3 4.9E-05 40.6 15.5 185 80-300 233-429 (460)
226 KOG0316 Conserved WD40 repeat- 94.6 3.4 7.5E-05 37.3 16.8 141 128-299 18-162 (307)
227 KOG0643 Translation initiation 94.6 3.8 8.1E-05 37.8 22.4 187 88-301 16-211 (327)
228 PF14583 Pectate_lyase22: Olig 94.5 0.81 1.8E-05 44.6 12.9 122 213-350 58-182 (386)
229 KOG0973 Histone transcription 94.5 0.52 1.1E-05 50.5 12.4 174 83-266 130-356 (942)
230 COG0823 TolB Periplasmic compo 94.3 1.1 2.4E-05 44.7 13.9 124 215-373 218-344 (425)
231 PF00930 DPPIV_N: Dipeptidyl p 94.2 5.7 0.00012 38.5 21.6 50 336-385 260-315 (353)
232 PF02333 Phytase: Phytase; In 94.2 6 0.00013 38.7 19.6 149 92-267 66-239 (381)
233 PLN00033 photosystem II stabil 94.0 6.9 0.00015 38.7 26.0 98 181-299 243-346 (398)
234 KOG2321 WD40 repeat protein [G 94.0 0.57 1.2E-05 47.2 10.8 153 88-265 181-343 (703)
235 PF05694 SBP56: 56kDa selenium 94.0 7.1 0.00015 38.7 21.3 201 94-300 87-332 (461)
236 KOG0310 Conserved WD40 repeat- 94.0 2.7 5.9E-05 41.5 15.2 146 83-260 154-304 (487)
237 PHA02713 hypothetical protein; 93.8 9.7 0.00021 39.5 21.7 218 105-385 273-533 (557)
238 KOG3881 Uncharacterized conser 93.7 7.2 0.00016 37.7 17.8 88 212-302 223-312 (412)
239 KOG0288 WD40 repeat protein Ti 93.6 4.7 0.0001 39.2 15.7 185 79-298 216-405 (459)
240 PF14517 Tachylectin: Tachylec 93.5 0.57 1.2E-05 42.3 9.1 133 68-225 66-208 (229)
241 TIGR02276 beta_rpt_yvtn 40-res 93.5 0.35 7.7E-06 30.7 5.9 41 92-136 1-42 (42)
242 KOG0294 WD40 repeat-containing 93.4 5.1 0.00011 37.7 15.2 151 85-267 130-283 (362)
243 smart00284 OLF Olfactomedin-li 93.2 7 0.00015 36.1 18.6 149 82-264 74-251 (255)
244 KOG1036 Mitotic spindle checkp 92.9 8.3 0.00018 36.2 16.2 188 74-299 87-294 (323)
245 KOG2110 Uncharacterized conser 92.8 9.5 0.00021 36.7 16.4 146 129-300 89-238 (391)
246 KOG1963 WD40 repeat protein [G 92.8 15 0.00033 39.0 19.2 153 86-267 209-377 (792)
247 TIGR03118 PEPCTERM_chp_1 conse 92.8 8.9 0.00019 36.2 18.0 160 98-265 104-279 (336)
248 TIGR02276 beta_rpt_yvtn 40-res 92.6 0.62 1.3E-05 29.5 6.1 42 244-289 1-42 (42)
249 KOG0265 U5 snRNP-specific prot 92.6 9.1 0.0002 35.8 16.3 115 127-266 47-164 (338)
250 KOG3881 Uncharacterized conser 92.4 2.7 5.9E-05 40.5 12.3 102 84-193 204-307 (412)
251 PF07494 Reg_prop: Two compone 92.4 0.17 3.7E-06 28.4 2.8 16 284-299 8-23 (24)
252 KOG0313 Microtubule binding pr 92.4 5.2 0.00011 38.5 14.1 161 79-266 190-377 (423)
253 KOG2919 Guanine nucleotide-bin 92.4 4.6 9.9E-05 38.2 13.4 149 92-265 121-281 (406)
254 KOG0268 Sof1-like rRNA process 92.3 0.59 1.3E-05 44.5 7.7 147 88-262 193-342 (433)
255 PF05935 Arylsulfotrans: Aryls 92.1 13 0.00028 37.8 17.9 120 133-265 153-301 (477)
256 PF02191 OLF: Olfactomedin-lik 92.1 9.9 0.00021 35.1 18.8 150 82-264 69-246 (250)
257 KOG0649 WD40 repeat protein [G 92.0 9.4 0.0002 34.8 21.4 149 90-266 18-187 (325)
258 PRK13616 lipoprotein LpqB; Pro 91.8 19 0.00041 37.7 20.9 156 82-268 349-530 (591)
259 smart00135 LY Low-density lipo 91.7 0.84 1.8E-05 28.9 5.9 36 79-114 5-41 (43)
260 PF02897 Peptidase_S9_N: Proly 91.5 15 0.00034 36.2 19.9 163 180-388 127-312 (414)
261 COG5276 Uncharacterized conser 91.3 13 0.00028 34.9 18.5 172 146-384 98-284 (370)
262 KOG1445 Tumor-specific antigen 91.2 1.8 3.8E-05 44.3 10.1 146 97-265 693-844 (1012)
263 KOG0264 Nucleosome remodeling 91.2 7.8 0.00017 38.0 14.1 173 63-265 165-347 (422)
264 KOG1538 Uncharacterized conser 91.2 11 0.00023 39.2 15.5 151 87-265 137-293 (1081)
265 PF00930 DPPIV_N: Dipeptidyl p 91.2 11 0.00024 36.5 15.8 85 212-300 257-347 (353)
266 KOG4441 Proteins containing BT 91.2 21 0.00046 37.2 19.1 209 105-374 302-530 (571)
267 PF00058 Ldl_recept_b: Low-den 91.1 0.88 1.9E-05 29.3 5.4 40 248-290 2-42 (42)
268 KOG0295 WD40 repeat-containing 90.9 16 0.00034 35.2 17.4 51 248-301 305-355 (406)
269 COG4247 Phy 3-phytase (myo-ino 90.6 14 0.0003 34.1 18.6 104 215-322 126-247 (364)
270 KOG0307 Vesicle coat complex C 90.5 3.3 7.2E-05 45.0 11.9 153 88-264 70-239 (1049)
271 KOG0306 WD40-repeat-containing 90.4 26 0.00057 36.9 18.0 178 88-299 71-263 (888)
272 KOG3914 WD repeat protein WDR4 90.3 8.3 0.00018 37.3 13.3 154 84-266 64-224 (390)
273 KOG0308 Conserved WD40 repeat- 90.1 20 0.00044 37.0 16.4 188 84-302 119-320 (735)
274 KOG4227 WD40 repeat protein [G 90.1 19 0.00042 34.9 16.7 188 87-300 61-264 (609)
275 PF00058 Ldl_recept_b: Low-den 90.0 1.2 2.7E-05 28.6 5.4 41 188-244 1-42 (42)
276 KOG2139 WD40 repeat protein [G 89.9 13 0.00027 35.9 13.9 143 85-259 198-370 (445)
277 KOG0301 Phospholipase A2-activ 89.4 11 0.00024 39.0 14.1 144 88-266 146-289 (745)
278 PF07494 Reg_prop: Two compone 89.4 0.44 9.6E-06 26.7 2.5 18 177-194 5-22 (24)
279 KOG1408 WD40 repeat protein [F 89.3 14 0.0003 38.8 14.6 196 82-299 459-659 (1080)
280 KOG4441 Proteins containing BT 89.2 23 0.0005 36.9 16.9 135 105-267 350-501 (571)
281 KOG2315 Predicted translation 89.0 22 0.00047 36.1 15.5 76 215-297 251-328 (566)
282 KOG0284 Polyadenylation factor 88.8 11 0.00024 36.7 12.9 109 130-265 99-210 (464)
283 KOG1009 Chromatin assembly com 88.8 19 0.00041 35.1 14.4 99 127-248 65-179 (434)
284 PF02897 Peptidase_S9_N: Proly 88.7 26 0.00057 34.5 24.7 242 88-388 129-407 (414)
285 KOG0295 WD40 repeat-containing 88.3 25 0.00054 33.9 16.9 158 83-266 194-365 (406)
286 PF05935 Arylsulfotrans: Aryls 88.3 12 0.00027 37.9 14.0 114 88-230 153-308 (477)
287 KOG2395 Protein involved in va 88.1 11 0.00025 38.0 12.8 153 88-265 339-500 (644)
288 KOG0647 mRNA export protein (c 87.8 24 0.00053 33.1 17.0 71 87-163 32-103 (347)
289 KOG0306 WD40-repeat-containing 87.6 41 0.0009 35.6 21.5 181 83-303 374-573 (888)
290 PF00780 CNH: CNH domain; Int 87.4 24 0.00051 32.5 22.2 62 91-163 4-65 (275)
291 KOG0313 Microtubule binding pr 86.9 31 0.00067 33.4 15.7 105 77-193 255-363 (423)
292 KOG4547 WD40 repeat-containing 86.6 40 0.00086 34.4 17.5 128 96-254 72-209 (541)
293 KOG0647 mRNA export protein (c 86.4 30 0.00064 32.6 19.8 149 85-266 75-229 (347)
294 KOG0771 Prolactin regulatory e 86.2 17 0.00038 35.3 12.6 70 177-264 282-353 (398)
295 KOG0276 Vesicle coat complex C 85.6 48 0.001 34.4 21.9 151 90-266 63-216 (794)
296 PF14870 PSII_BNR: Photosynthe 85.0 36 0.00078 32.4 27.3 167 96-300 73-252 (302)
297 PF10647 Gmad1: Lipoprotein Lp 85.0 32 0.00068 31.7 19.9 155 83-266 24-198 (253)
298 KOG0270 WD40 repeat-containing 84.9 42 0.00092 33.1 17.1 183 87-301 248-439 (463)
299 COG5167 VID27 Protein involved 84.9 21 0.00046 36.1 12.7 156 83-265 467-632 (776)
300 KOG1188 WD40 repeat protein [G 84.8 38 0.00081 32.4 14.3 190 95-311 41-244 (376)
301 PF14269 Arylsulfotran_2: Aryl 84.6 25 0.00055 33.3 13.2 123 130-267 146-291 (299)
302 KOG3621 WD40 repeat-containing 83.8 61 0.0013 34.1 17.3 97 89-195 40-144 (726)
303 PF05694 SBP56: 56kDa selenium 83.8 4.9 0.00011 39.8 8.0 65 235-299 312-393 (461)
304 KOG1273 WD40 repeat protein [G 83.4 42 0.00091 31.9 18.4 55 130-194 26-83 (405)
305 PHA03098 kelch-like protein; P 83.1 59 0.0013 33.4 20.0 134 105-266 312-465 (534)
306 COG5276 Uncharacterized conser 82.2 46 0.00099 31.4 18.3 146 90-266 134-286 (370)
307 PF00400 WD40: WD domain, G-be 82.1 5.2 0.00011 24.5 5.2 32 79-110 8-39 (39)
308 KOG3914 WD repeat protein WDR4 81.8 8.5 0.00018 37.3 8.5 109 128-262 63-180 (390)
309 PF01731 Arylesterase: Arylest 81.8 4.5 9.7E-05 30.7 5.5 36 76-112 48-84 (86)
310 KOG1009 Chromatin assembly com 81.6 13 0.00027 36.3 9.5 64 235-302 124-187 (434)
311 KOG0321 WD40 repeat-containing 81.5 71 0.0015 33.2 16.4 60 240-299 223-290 (720)
312 KOG4328 WD40 protein [Function 81.3 28 0.00061 34.5 11.9 155 86-265 190-353 (498)
313 KOG0305 Anaphase promoting com 81.3 66 0.0014 32.7 23.6 185 83-299 218-406 (484)
314 KOG0274 Cdc4 and related F-box 80.6 75 0.0016 32.9 24.0 152 79-267 246-402 (537)
315 KOG1034 Transcriptional repres 80.6 55 0.0012 31.3 16.0 59 242-301 315-374 (385)
316 KOG0305 Anaphase promoting com 80.4 71 0.0015 32.5 14.8 153 87-266 306-462 (484)
317 KOG0918 Selenium-binding prote 80.2 13 0.00029 36.2 9.2 112 87-224 316-435 (476)
318 KOG0322 G-protein beta subunit 80.2 16 0.00034 33.8 9.2 68 179-264 254-322 (323)
319 KOG4547 WD40 repeat-containing 79.7 65 0.0014 32.9 14.2 85 212-299 77-163 (541)
320 KOG1963 WD40 repeat protein [G 79.5 28 0.00062 37.0 12.0 66 86-161 255-321 (792)
321 KOG0274 Cdc4 and related F-box 79.1 71 0.0015 33.0 14.9 143 94-266 341-483 (537)
322 PF15416 DUF4623: Domain of un 78.4 20 0.00044 34.2 9.6 119 243-390 140-276 (442)
323 KOG1408 WD40 repeat protein [F 76.6 22 0.00047 37.4 10.0 67 85-161 599-670 (1080)
324 PF11768 DUF3312: Protein of u 76.4 14 0.0003 37.7 8.5 68 83-161 260-328 (545)
325 PHA02713 hypothetical protein; 76.0 87 0.0019 32.6 14.8 121 216-373 273-405 (557)
326 KOG1524 WD40 repeat-containing 75.6 81 0.0018 32.2 13.3 84 95-194 76-164 (737)
327 KOG0281 Beta-TrCP (transducin 75.3 17 0.00037 34.8 8.3 173 83-299 198-377 (499)
328 TIGR03074 PQQ_membr_DH membran 75.1 1.3E+02 0.0028 32.7 24.0 21 95-115 195-215 (764)
329 PF13570 PQQ_3: PQQ-like domai 74.7 5.3 0.00012 25.1 3.5 23 88-112 17-39 (40)
330 PHA03098 kelch-like protein; P 74.6 1.1E+02 0.0023 31.5 21.0 140 214-386 357-512 (534)
331 KOG0264 Nucleosome remodeling 74.6 93 0.002 30.7 14.4 163 77-265 222-404 (422)
332 PHA02790 Kelch-like protein; P 74.2 1.1E+02 0.0023 31.2 20.6 128 215-386 331-471 (480)
333 KOG2394 WD40 protein DMR-N9 [G 73.8 12 0.00025 37.9 7.1 91 84-186 292-384 (636)
334 KOG1215 Low-density lipoprotei 73.2 1.5E+02 0.0033 32.6 17.4 181 84-296 438-626 (877)
335 PF06739 SBBP: Beta-propeller 73.2 3.1 6.7E-05 26.2 2.0 17 178-194 14-30 (38)
336 KOG0650 WD40 repeat nucleolar 72.7 28 0.00061 35.8 9.5 112 83-224 522-638 (733)
337 KOG1188 WD40 repeat protein [G 72.7 69 0.0015 30.7 11.5 141 213-387 48-198 (376)
338 KOG0642 Cell-cycle nuclear pro 72.7 33 0.00072 34.9 10.0 152 87-265 401-561 (577)
339 KOG1445 Tumor-specific antigen 72.4 93 0.002 32.5 13.1 170 68-266 114-294 (1012)
340 KOG3545 Olfactomedin and relat 71.1 85 0.0018 28.8 12.1 62 187-264 179-245 (249)
341 smart00564 PQQ beta-propeller 70.0 9 0.00019 22.6 3.6 16 212-227 13-28 (33)
342 COG4590 ABC-type uncharacteriz 69.5 16 0.00034 36.4 6.9 30 235-266 358-387 (733)
343 KOG2114 Vacuolar assembly/sort 69.4 1.7E+02 0.0037 31.7 23.4 53 213-267 145-203 (933)
344 PHA02790 Kelch-like protein; P 69.4 1.3E+02 0.0029 30.4 15.4 113 105-254 332-454 (480)
345 PF10647 Gmad1: Lipoprotein Lp 69.1 94 0.002 28.5 23.1 145 129-301 25-186 (253)
346 KOG4227 WD40 repeat protein [G 69.0 72 0.0016 31.2 10.9 68 84-160 107-177 (609)
347 COG4447 Uncharacterized protei 67.8 1.1E+02 0.0024 28.8 15.9 47 214-262 147-196 (339)
348 KOG0267 Microtubule severing p 66.9 24 0.00053 37.0 7.9 203 79-321 67-277 (825)
349 KOG1063 RNA polymerase II elon 66.4 1.8E+02 0.0038 30.8 13.7 107 80-194 265-379 (764)
350 PF04762 IKI3: IKI3 family; I 66.2 2.2E+02 0.0048 31.7 24.6 64 88-160 81-148 (928)
351 KOG1645 RING-finger-containing 65.3 1.5E+02 0.0032 29.3 15.4 72 83-162 194-266 (463)
352 KOG0321 WD40 repeat-containing 63.8 1.9E+02 0.0041 30.3 13.3 103 145-265 65-175 (720)
353 PF13570 PQQ_3: PQQ-like domai 63.6 28 0.00061 21.7 5.1 39 345-385 1-39 (40)
354 KOG0641 WD40 repeat protein [G 63.2 1.2E+02 0.0025 27.5 24.0 52 248-301 195-252 (350)
355 KOG0269 WD40 repeat-containing 62.8 92 0.002 33.1 11.1 98 153-267 61-166 (839)
356 KOG0642 Cell-cycle nuclear pro 62.6 1.7E+02 0.0037 30.0 12.6 76 83-163 344-427 (577)
357 TIGR03074 PQQ_membr_DH membran 62.1 2.4E+02 0.0052 30.7 19.2 55 334-388 639-713 (764)
358 KOG2394 WD40 protein DMR-N9 [G 61.9 1.5E+02 0.0032 30.4 11.9 55 128-193 291-349 (636)
359 KOG2314 Translation initiation 61.5 1E+02 0.0022 31.6 10.8 102 181-300 450-557 (698)
360 KOG4497 Uncharacterized conser 61.5 32 0.00069 32.8 7.0 63 72-139 82-145 (447)
361 KOG1332 Vesicle coat complex C 61.3 1.4E+02 0.0029 27.6 17.8 196 83-299 56-275 (299)
362 PF01011 PQQ: PQQ enzyme repea 61.3 17 0.00036 22.6 3.7 16 212-227 7-22 (38)
363 PF14339 DUF4394: Domain of un 61.1 89 0.0019 28.5 9.6 89 127-239 26-119 (236)
364 COG4590 ABC-type uncharacteriz 60.6 1.2E+02 0.0025 30.6 10.8 142 237-390 223-391 (733)
365 KOG2315 Predicted translation 60.5 2E+02 0.0044 29.4 15.7 132 105-267 252-392 (566)
366 KOG0307 Vesicle coat complex C 60.3 29 0.00062 38.2 7.3 151 88-267 167-329 (1049)
367 PLN02193 nitrile-specifier pro 59.6 2E+02 0.0044 29.0 14.6 51 216-266 194-253 (470)
368 KOG1310 WD40 repeat protein [G 59.0 1.2E+02 0.0025 31.2 10.7 108 177-301 51-170 (758)
369 PF04053 Coatomer_WDAD: Coatom 57.7 2.2E+02 0.0047 28.8 20.5 146 76-265 27-175 (443)
370 KOG4283 Transcription-coupled 57.5 1.7E+02 0.0038 27.6 19.3 94 212-307 165-274 (397)
371 KOG1063 RNA polymerase II elon 57.3 1.7E+02 0.0037 30.9 11.8 94 52-155 496-594 (764)
372 KOG0269 WD40 repeat-containing 54.7 1.7E+02 0.0036 31.3 11.4 146 95-269 101-254 (839)
373 KOG3567 Peptidylglycine alpha- 54.3 18 0.00038 36.0 4.2 23 174-196 464-486 (501)
374 KOG1310 WD40 repeat protein [G 53.8 2.7E+02 0.0059 28.7 16.7 226 127-389 50-307 (758)
375 KOG1240 Protein kinase contain 53.7 3.7E+02 0.008 30.6 14.1 51 214-265 1172-1225(1431)
376 PF00400 WD40: WD domain, G-be 53.5 41 0.00089 20.2 4.6 32 231-263 8-39 (39)
377 KOG4497 Uncharacterized conser 52.9 1.9E+02 0.0042 27.8 10.5 59 180-255 95-154 (447)
378 PF04762 IKI3: IKI3 family; I 52.5 3.7E+02 0.0081 30.0 16.1 167 87-265 261-456 (928)
379 PF13970 DUF4221: Domain of un 51.8 1.4E+02 0.003 28.5 10.2 52 336-387 115-188 (333)
380 KOG0303 Actin-binding protein 51.6 2.5E+02 0.0054 27.7 17.8 53 212-265 151-203 (472)
381 PF08553 VID27: VID27 cytoplas 51.5 39 0.00085 36.5 6.6 64 87-160 582-645 (794)
382 PRK10115 protease 2; Provision 51.1 3.4E+02 0.0074 29.1 16.5 155 179-382 129-295 (686)
383 TIGR03803 Gloeo_Verruco Gloeo_ 50.7 54 0.0012 20.1 4.5 31 187-230 1-31 (34)
384 PRK14131 N-acetylneuraminic ac 50.4 2.5E+02 0.0054 27.3 14.8 17 215-231 189-205 (376)
385 COG4222 Uncharacterized protei 49.8 2.7E+02 0.0059 27.5 13.9 27 79-105 65-91 (391)
386 PF09826 Beta_propel: Beta pro 49.6 3.1E+02 0.0068 28.2 26.2 54 333-386 301-356 (521)
387 COG4247 Phy 3-phytase (myo-ino 49.0 2.2E+02 0.0049 26.4 24.8 64 238-303 208-280 (364)
388 KOG0918 Selenium-binding prote 47.0 78 0.0017 31.1 7.2 31 237-267 314-344 (476)
389 KOG1332 Vesicle coat complex C 47.0 2.4E+02 0.0051 26.1 10.0 114 89-224 18-137 (299)
390 PF07676 PD40: WD40-like Beta 46.2 51 0.0011 20.1 4.2 20 237-256 11-30 (39)
391 PF03178 CPSF_A: CPSF A subuni 45.5 2.7E+02 0.0058 26.3 13.7 133 104-267 62-204 (321)
392 KOG3621 WD40 repeat-containing 44.4 1.1E+02 0.0024 32.2 8.3 29 85-113 127-155 (726)
393 KOG4283 Transcription-coupled 43.5 2.9E+02 0.0064 26.2 20.4 31 234-265 246-276 (397)
394 KOG1034 Transcriptional repres 42.7 1E+02 0.0023 29.5 7.2 54 210-264 324-382 (385)
395 TIGR02608 delta_60_rpt delta-6 42.0 80 0.0017 21.7 4.8 16 284-299 4-19 (55)
396 PLN02153 epithiospecifier prot 40.9 3.3E+02 0.0071 26.0 21.3 17 215-231 159-175 (341)
397 KOG1920 IkappaB kinase complex 40.3 6.1E+02 0.013 28.9 22.2 47 89-139 75-121 (1265)
398 PF12894 Apc4_WD40: Anaphase-p 38.9 87 0.0019 20.6 4.5 27 87-113 16-42 (47)
399 smart00320 WD40 WD40 repeats. 36.8 58 0.0013 17.8 3.3 25 85-109 15-39 (40)
400 PF11768 DUF3312: Protein of u 36.8 5E+02 0.011 26.9 14.7 67 179-265 262-329 (545)
401 PF14779 BBS1: Ciliary BBSome 36.0 1.3E+02 0.0028 27.9 6.6 54 96-159 197-255 (257)
402 KOG2111 Uncharacterized conser 35.7 4E+02 0.0087 25.5 10.9 98 96-220 151-253 (346)
403 TIGR02171 Fb_sc_TIGR02171 Fibr 35.5 3.2E+02 0.007 30.1 10.3 70 215-285 329-404 (912)
404 PF15416 DUF4623: Domain of un 35.2 4.3E+02 0.0092 25.6 18.4 78 179-268 185-274 (442)
405 KOG1272 WD40-repeat-containing 34.8 1.3E+02 0.0029 30.1 6.8 82 212-298 270-352 (545)
406 PF11725 AvrE: Pathogenicity f 34.7 2.6E+02 0.0056 32.9 9.8 139 88-265 368-516 (1774)
407 KOG1409 Uncharacterized conser 34.3 4.4E+02 0.0096 25.6 15.1 162 83-273 69-235 (404)
408 KOG0277 Peroxisomal targeting 34.0 3.9E+02 0.0085 24.8 14.3 154 87-265 65-221 (311)
409 KOG0322 G-protein beta subunit 33.1 1E+02 0.0023 28.6 5.4 57 234-294 251-307 (323)
410 KOG0276 Vesicle coat complex C 32.8 6.1E+02 0.013 26.7 20.1 150 88-265 19-171 (794)
411 KOG2041 WD40 repeat protein [G 32.8 6.6E+02 0.014 27.1 16.4 46 336-381 289-343 (1189)
412 PF00780 CNH: CNH domain; Int 32.6 3.8E+02 0.0083 24.3 19.1 16 145-161 8-23 (275)
413 KOG1524 WD40 repeat-containing 32.3 5.9E+02 0.013 26.4 13.9 87 146-254 77-165 (737)
414 KOG4532 WD40-like repeat conta 31.9 4.4E+02 0.0095 24.8 14.6 95 256-385 137-233 (344)
415 PLN02153 epithiospecifier prot 31.7 4.6E+02 0.0099 24.9 20.6 17 215-231 101-117 (341)
416 KOG0302 Ribosome Assembly prot 31.4 5.2E+02 0.011 25.4 16.1 116 130-270 214-337 (440)
417 PF13964 Kelch_6: Kelch motif 30.8 1E+02 0.0022 20.0 4.0 19 213-231 26-44 (50)
418 KOG1215 Low-density lipoprotei 30.1 7.8E+02 0.017 27.1 21.8 127 146-296 450-584 (877)
419 TIGR03548 mutarot_permut cycli 29.9 4.8E+02 0.01 24.6 19.4 52 214-266 138-195 (323)
420 KOG1230 Protein containing rep 29.6 5.9E+02 0.013 25.5 11.9 129 105-253 99-250 (521)
421 KOG0649 WD40 repeat protein [G 29.6 4.6E+02 0.0099 24.3 17.1 66 87-163 119-187 (325)
422 KOG1517 Guanine nucleotide bin 29.2 8.9E+02 0.019 27.5 20.6 239 91-388 1120-1384(1387)
423 TIGR03548 mutarot_permut cycli 26.8 5.4E+02 0.012 24.2 16.1 51 215-266 88-148 (323)
424 KOG2114 Vacuolar assembly/sort 26.7 8.8E+02 0.019 26.6 17.8 61 238-300 129-193 (933)
425 KOG1240 Protein kinase contain 26.6 1E+03 0.022 27.4 12.4 59 147-223 1166-1225(1431)
426 TIGR03547 muta_rot_YjhT mutatr 25.2 5.9E+02 0.013 24.1 22.1 17 215-231 168-184 (346)
427 KOG0277 Peroxisomal targeting 25.1 5.6E+02 0.012 23.8 13.9 139 103-265 37-178 (311)
428 PF15390 DUF4613: Domain of un 24.0 4.1E+02 0.0088 27.8 8.3 76 68-149 324-400 (671)
429 PF05131 Pep3_Vps18: Pep3/Vps1 23.9 4.3E+02 0.0094 22.1 8.3 68 83-161 34-102 (147)
430 PF09910 DUF2139: Uncharacteri 23.4 6.6E+02 0.014 24.0 22.9 42 338-383 297-339 (339)
431 COG1770 PtrB Protease II [Amin 22.6 9.5E+02 0.021 25.6 17.1 79 172-266 124-209 (682)
432 PF08309 LVIVD: LVIVD repeat; 22.4 2.2E+02 0.0047 18.2 4.1 18 146-163 13-30 (42)
433 KOG2377 Uncharacterized conser 21.7 8.6E+02 0.019 24.8 13.0 51 87-139 27-78 (657)
434 KOG0302 Ribosome Assembly prot 21.0 8.1E+02 0.017 24.2 12.8 54 212-265 231-288 (440)
435 KOG1007 WD repeat protein TSSC 20.9 7.3E+02 0.016 23.6 9.9 113 128-265 124-245 (370)
436 PF01344 Kelch_1: Kelch motif; 20.5 2.3E+02 0.005 17.7 4.1 20 212-231 25-44 (47)
437 KOG1645 RING-finger-containing 20.2 3.4E+02 0.0074 26.9 6.6 72 177-266 194-267 (463)
No 1
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=100.00 E-value=6.9e-53 Score=392.72 Aligned_cols=342 Identities=38% Similarity=0.631 Sum_probs=285.6
Q ss_pred eeeeeCCCCCCCCCCCC-CCCCCccccCcccccccCceEEecCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCc
Q 016199 39 LVYKLDSFDPAPIPVHE-FTHPPLTAALRNERMLQGSEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPAD 117 (393)
Q Consensus 39 ~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~l~~~~~l~~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~ 117 (393)
+++.++...+...+... .+.++..+.+.+++.+..+|.+.-+.+..|+.+.++.+....|.|..+|+|-+.+.......
T Consensus 20 ~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~E~~~fd~~~~gp~~~v~dg~il~~~g~~~Gwv~~~~~~~s~~~ 99 (376)
T KOG1520|consen 20 LLYLLSGSSIAGSPDDRLFSKLPLLGKLIPNNHLTGPESLLFDPQGGGPYTGVVDGRILKYTGNDDGWVKFADTKDSTNR 99 (376)
T ss_pred hhhccCcccccCCchhcccCCCCcccccccccccCChhhheecccCCCceEEEECCceEEEeccCceEEEEEeccccccc
Confidence 34445555555554444 44556677777888788888888877776777767655445788888998888776321111
Q ss_pred ce-----eeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc--eEEEeeccCCccccccccEEEcCCCcE
Q 016199 118 SL-----VHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS--TVLLTDEAEGQKFKLTDGVDVADDGMI 190 (393)
Q Consensus 118 ~~-----~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~l 190 (393)
.. .....+.|+||+||+|+.+| .+|||||++.||+.++++| .+.+.++.+|.++.+.|+++++++|.+
T Consensus 100 ~~~~~~~~~~~e~~CGRPLGl~f~~~g-----gdL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~v 174 (376)
T KOG1520|consen 100 SQCCDPGSFETEPLCGRPLGIRFDKKG-----GDLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVV 174 (376)
T ss_pred cccCCCcceecccccCCcceEEeccCC-----CeEEEEecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCeE
Confidence 11 11223568999999999876 3899999999999999988 677778899999999999999999999
Q ss_pred EEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCc
Q 016199 191 YFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAG 270 (393)
Q Consensus 191 ~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~ 270 (393)
||||+|+++++++++++++|+..+||+++||+.|+..+++++++.+|||+++|+|++++++||+...||.|||++|++.+
T Consensus 175 yFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~g 254 (376)
T KOG1520|consen 175 YFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAG 254 (376)
T ss_pred EEeccccccchhheEEeeecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeEecCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeccCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCC----CCceEEEECCCCc
Q 016199 271 RVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGK----SSSGVFIVDLDGK 346 (393)
Q Consensus 271 ~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~----~~~~v~~~d~~g~ 346 (393)
+.|+|++++||+||||+.+++|++||++...|+.++++++++||+|+++.+++..+....... ++..|.+.|.+|+
T Consensus 255 t~EvFa~~LPG~PDNIR~~~~G~fWVal~~~~~~~~~~~~~~p~vr~~~~~~~~~~~~~~~~~~~~~p~~~V~~~d~~G~ 334 (376)
T KOG1520|consen 255 TSEVFAEGLPGYPDNIRRDSTGHFWVALHSKRSTLWRLLMKYPWVRKFIAKLPKYMELLYFLNNGGKPHSAVKLSDETGK 334 (376)
T ss_pred chhhHhhcCCCCCcceeECCCCCEEEEEecccchHHHhhhcChHHHHHHHhhccchhhhhhhhccCCCceEEEEecCCCc
Confidence 999999899999999999999999999999999999999999999999999876653211111 2256777789999
Q ss_pred EEEEeeCCC---CCccEEEEEeCCEEEEEecCCCeEEEEeCC
Q 016199 347 PIAHYYDPE---MSLISSAIKIGDHLYCGSVHHRGILHLDVN 385 (393)
Q Consensus 347 ~~~~~~d~~---~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~ 385 (393)
++++|||.+ ...++.+.|.+|+||+||+..++|+++|+.
T Consensus 335 il~~lhD~~g~~~~~~sev~E~dg~LyiGS~~~p~i~~lkl~ 376 (376)
T KOG1520|consen 335 ILESLHDKEGKVITLVSEVGEHDGHLYIGSLFNPYIARLKLP 376 (376)
T ss_pred EEEEEecCCCCceEEEEEEeecCCeEEEcccCcceeEEEecC
Confidence 999999987 455666677789999999999999999973
No 2
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.96 E-value=1.1e-26 Score=214.80 Aligned_cols=232 Identities=25% Similarity=0.378 Sum_probs=172.9
Q ss_pred CceEEEec-CCCEEEEEe-cCCeEEEEEcCCCCCcceeeeeecCCCceeeeEEC-CCCCCCCceEEEEEeCCCceEEEeC
Q 016199 85 PEDLLYDA-HSKLIYTGC-EDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFA-NSDPDADRITMIVADAYKGLLKISG 161 (393)
Q Consensus 85 Pe~ia~d~-~g~~L~~~~-~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d-~~G~~~~~~~L~v~~~~~gl~~id~ 161 (393)
||++++++ +|. ||+.+ ..++|++++++++. ...+.. ..|.|++++ ++| +||+++. .++..+|+
T Consensus 2 ~Egp~~d~~~g~-l~~~D~~~~~i~~~~~~~~~----~~~~~~--~~~~G~~~~~~~g------~l~v~~~-~~~~~~d~ 67 (246)
T PF08450_consen 2 GEGPVWDPRDGR-LYWVDIPGGRIYRVDPDTGE----VEVIDL--PGPNGMAFDRPDG------RLYVADS-GGIAVVDP 67 (246)
T ss_dssp EEEEEEETTTTE-EEEEETTTTEEEEEETTTTE----EEEEES--SSEEEEEEECTTS------EEEEEET-TCEEEEET
T ss_pred CcceEEECCCCE-EEEEEcCCCEEEEEECCCCe----EEEEec--CCCceEEEEccCC------EEEEEEc-CceEEEec
Confidence 78999998 554 65555 58899999998875 444433 239999999 788 9999974 66777786
Q ss_pred Cc--eEEEeeccCCc-cccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCC
Q 016199 162 NS--TVLLTDEAEGQ-KFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFAN 238 (393)
Q Consensus 162 ~g--~~~l~~~~~g~-~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~n 238 (393)
+. .+.+.....+. ++..+|++++|++|++||++....... ....|+|++++++ ++.+.+..++..||
T Consensus 68 ~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~---------~~~~g~v~~~~~~-~~~~~~~~~~~~pN 137 (246)
T PF08450_consen 68 DTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGAS---------GIDPGSVYRIDPD-GKVTVVADGLGFPN 137 (246)
T ss_dssp TTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTT---------CGGSEEEEEEETT-SEEEEEEEEESSEE
T ss_pred CCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccc---------cccccceEEECCC-CeEEEEecCccccc
Confidence 54 55555443333 677899999999999999986542210 0011789999998 88888888899999
Q ss_pred cEEEcCCCCEEEEEeCCCCeEEEEEecCCC--Ccceeeeec--cCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcc
Q 016199 239 GVVLSPDQTHLVYCETSMRRCRKFYIKGKN--AGRVEKFIE--TLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPF 314 (393)
Q Consensus 239 gi~~s~dg~~l~v~~~~~~ri~~~~~~g~~--~~~~~~~~~--~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~ 314 (393)
||++++|++.||++++..++|++|+++.+. ....+.+.+ ...+.|||+++|++|++||+.+..
T Consensus 138 Gi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~------------- 204 (246)
T PF08450_consen 138 GIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG------------- 204 (246)
T ss_dssp EEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT-------------
T ss_pred ceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC-------------
Confidence 999999999999999999999999997432 333455543 223469999999999999998855
Q ss_pred hhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCC--CCccEEEEEeCCEEEEEec
Q 016199 315 IRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPE--MSLISSAIKIGDHLYCGSV 374 (393)
Q Consensus 315 ~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~--~~~~~~~~~~~g~Lyigs~ 374 (393)
+.|.++|++|+++..+..+. ...+++..++.++||+++.
T Consensus 205 ---------------------~~I~~~~p~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 205 ---------------------GRIVVFDPDGKLLREIELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp ---------------------TEEEEEETTSCEEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred ---------------------CEEEEECCCccEEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence 67999999999999999874 2233332335689999974
No 3
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.96 E-value=4.4e-26 Score=214.66 Aligned_cols=253 Identities=23% Similarity=0.341 Sum_probs=190.1
Q ss_pred cccccCceEEecCccCCCceEEEecCCCEE-EEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceE
Q 016199 68 ERMLQGSEKVGYGVLKGPEDLLYDAHSKLI-YTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRIT 146 (393)
Q Consensus 68 ~~~l~~~~~l~~g~~~~Pe~ia~d~~g~~L-~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~ 146 (393)
...+.....++||+ +++++.+.| |+....++|+++++.++. .+.+......+.++.++..| +
T Consensus 17 ~~~~~~~~~~gEgP-------~w~~~~~~L~w~DI~~~~i~r~~~~~g~----~~~~~~p~~~~~~~~~d~~g------~ 79 (307)
T COG3386 17 VTLLDKGATLGEGP-------VWDPDRGALLWVDILGGRIHRLDPETGK----KRVFPSPGGFSSGALIDAGG------R 79 (307)
T ss_pred eeEeecccccccCc-------cCcCCCCEEEEEeCCCCeEEEecCCcCc----eEEEECCCCcccceeecCCC------e
Confidence 34445555555554 478877745 555568899999998765 67776666778899999999 8
Q ss_pred EEEEeCCCceEEEeCC-c-e-EEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCC
Q 016199 147 MIVADAYKGLLKISGN-S-T-VLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPV 223 (393)
Q Consensus 147 L~v~~~~~gl~~id~~-g-~-~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~ 223 (393)
|+++. .|+.+++.+ + . +.+.....+.+.+.+|++.++++|++||++++. .. ....+....|.||++||.
T Consensus 80 Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~-~~-----~~~~~~~~~G~lyr~~p~ 151 (307)
T COG3386 80 LIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGY-FD-----LGKSEERPTGSLYRVDPD 151 (307)
T ss_pred EEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCc-cc-----cCccccCCcceEEEEcCC
Confidence 88875 455555533 3 4 666666667777889999999999999999873 10 112333567889999996
Q ss_pred CCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEec---CCCCcc-eeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199 224 TKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIK---GKNAGR-VEKFIETLPGLPDNIRYDGEGHYLIALA 299 (393)
Q Consensus 224 t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~---g~~~~~-~~~~~~~l~g~P~~i~~d~~G~lwva~~ 299 (393)
++..+.+..++..||||++||||+.+|++++..++|++|+++ +...++ ...+.+..+|.|||+++|++|++|++..
T Consensus 152 g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~ 231 (307)
T COG3386 152 GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAV 231 (307)
T ss_pred CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecc
Confidence 555554555599999999999999999999999999999987 333332 2344445689999999999999997544
Q ss_pred cCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCC--CCccEEEEEeCCEEEEEecCCC
Q 016199 300 TEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPE--MSLISSAIKIGDHLYCGSVHHR 377 (393)
Q Consensus 300 ~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~--~~~~~~~~~~~g~Lyigs~~~~ 377 (393)
.+. ++|.+|+++|+.+..+..|. ...+++..++.+.||+++....
T Consensus 232 ~~g---------------------------------~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~~ 278 (307)
T COG3386 232 WGG---------------------------------GRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARSG 278 (307)
T ss_pred cCC---------------------------------ceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEecCCC
Confidence 220 37999999999999999884 6677787778899999998873
Q ss_pred e
Q 016199 378 G 378 (393)
Q Consensus 378 ~ 378 (393)
.
T Consensus 279 ~ 279 (307)
T COG3386 279 M 279 (307)
T ss_pred C
Confidence 3
No 4
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=99.85 E-value=4.3e-21 Score=146.15 Aligned_cols=88 Identities=48% Similarity=0.933 Sum_probs=74.8
Q ss_pred ccEEEcCC-CcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCe
Q 016199 180 DGVDVADD-GMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRR 258 (393)
Q Consensus 180 ~~l~~d~d-G~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~r 258 (393)
|+++++++ |.+||||+|.++...+|+++++|+.++|+|++|||.|++++++++++.+||||++++|+++++|+|+...|
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~R 80 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYR 80 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCce
Confidence 58999998 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCC
Q 016199 259 CRKFYIKGK 267 (393)
Q Consensus 259 i~~~~~~g~ 267 (393)
|.|||++|+
T Consensus 81 i~rywl~Gp 89 (89)
T PF03088_consen 81 ILRYWLKGP 89 (89)
T ss_dssp EEEEESSST
T ss_pred EEEEEEeCC
Confidence 999999874
No 5
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.81 E-value=6.5e-18 Score=150.76 Aligned_cols=238 Identities=15% Similarity=0.135 Sum_probs=178.0
Q ss_pred CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeec-CCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeC
Q 016199 83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWIN-TGGRPLGIAFANSDPDADRITMIVADAYKGLLKISG 161 (393)
Q Consensus 83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~-~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~ 161 (393)
.+|.+++.++||.+.|.+...+.|-++|+.+++ ++.+.- .+.+|++|..++|| ..||+|...+|.|+++
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGe----v~~ypLg~Ga~Phgiv~gpdg------~~Witd~~~aI~R~dp 131 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGE----VETYPLGSGASPHGIVVGPDG------SAWITDTGLAIGRLDP 131 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCc----eEEEecCCCCCCceEEECCCC------CeeEecCcceeEEecC
Confidence 679999999999866677778889999999988 777753 35689999999999 9999998889999998
Q ss_pred Cc--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC-ccCCC
Q 016199 162 NS--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD-LYFAN 238 (393)
Q Consensus 162 ~g--~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~-l~~~n 238 (393)
+. ++.+.-. ........+...+|++|+|||+.. .|--=|+||.++.++++... -..|+
T Consensus 132 kt~evt~f~lp-~~~a~~nlet~vfD~~G~lWFt~q------------------~G~yGrLdPa~~~i~vfpaPqG~gpy 192 (353)
T COG4257 132 KTLEVTRFPLP-LEHADANLETAVFDPWGNLWFTGQ------------------IGAYGRLDPARNVISVFPAPQGGGPY 192 (353)
T ss_pred cccceEEeecc-cccCCCcccceeeCCCccEEEeec------------------cccceecCcccCceeeeccCCCCCCc
Confidence 66 4433211 111223456778999999999942 22223889988888877443 45699
Q ss_pred cEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeecc--CCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchh
Q 016199 239 GVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIET--LPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIR 316 (393)
Q Consensus 239 gi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~--l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r 316 (393)
||+..+|| .+|+++-..+.|-++|. ..+..+++..- +..-.+.|-.|+.|++|++++..
T Consensus 193 Gi~atpdG-svwyaslagnaiaridp---~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~--------------- 253 (353)
T COG4257 193 GICATPDG-SVWYASLAGNAIARIDP---FAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGT--------------- 253 (353)
T ss_pred ceEECCCC-cEEEEeccccceEEccc---ccCCcceecCCCcccccccccccCccCcEEEeccCC---------------
Confidence 99999999 58999888899999986 34445554311 11113456789999999998855
Q ss_pred hhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCC--CCccEEEEEeCCEEEEEecCCCeEEEEeCCCC
Q 016199 317 KVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPE--MSLISSAIKIGDHLYCGSVHHRGILHLDVNQH 387 (393)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~--~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~~ 387 (393)
+.+.+||+.-+.-.++..|. ...-+..++..|++|+.....+.|.|||..+.
T Consensus 254 -------------------g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea~agai~rfdpeta 307 (353)
T COG4257 254 -------------------GSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPETA 307 (353)
T ss_pred -------------------ceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeeccccCceeecCcccc
Confidence 56999999887777777665 33334445666999999999999999997554
No 6
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.74 E-value=3.7e-15 Score=162.33 Aligned_cols=247 Identities=18% Similarity=0.205 Sum_probs=170.9
Q ss_pred cCccCCCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeec--------------CCCceeeeEECCCCCCCC
Q 016199 79 YGVLKGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWIN--------------TGGRPLGIAFANSDPDAD 143 (393)
Q Consensus 79 ~g~~~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~--------------~~~~p~gl~~d~~G~~~~ 143 (393)
..++..|.++++|+.++.||++.. +++|.+++.++.. ...+.. ...+|.||+++++|
T Consensus 564 ~s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~----i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~g---- 635 (1057)
T PLN02919 564 TSPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNF----IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKK---- 635 (1057)
T ss_pred cccCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCE----EEEEccCCCcCCCCCchhccccCCCcEEEEeCCC----
Confidence 345788999999986556888765 7799999987653 222211 12369999999876
Q ss_pred ceEEEEEeCCCc-eEEEeCCc--eEEEeec------cCC------ccccccccEEEcC-CCcEEEEeCCCccchhhheeh
Q 016199 144 RITMIVADAYKG-LLKISGNS--TVLLTDE------AEG------QKFKLTDGVDVAD-DGMIYFTDASNKYYLREYILD 207 (393)
Q Consensus 144 ~~~L~v~~~~~g-l~~id~~g--~~~l~~~------~~g------~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~~~ 207 (393)
+.|||+|.++. |.++|..+ .+.+... ..+ ..++.|.++++++ +|.+|++|
T Consensus 636 -n~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad------------- 701 (1057)
T PLN02919 636 -NLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM------------- 701 (1057)
T ss_pred -CEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE-------------
Confidence 15999998654 77788754 4444321 111 1256788999999 67999998
Q ss_pred hcccCCCcEEEEEeCCCCeEEEEec---------------CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcce
Q 016199 208 IFEGKPNGRLLSFDPVTKETKVLVS---------------DLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRV 272 (393)
Q Consensus 208 ~~e~~~~g~l~~~d~~t~~~~~~~~---------------~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~ 272 (393)
..+++|++||+.++.+..+.. .+..|+||++++||+.+||+++.+++|.+|++++.. .
T Consensus 702 ----~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~---~ 774 (1057)
T PLN02919 702 ----AGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGG---S 774 (1057)
T ss_pred ----CCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCc---E
Confidence 345678888887776554321 245799999999999999999999999999986421 1
Q ss_pred eeee-------c--------------cCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCC
Q 016199 273 EKFI-------E--------------TLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPM 331 (393)
Q Consensus 273 ~~~~-------~--------------~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 331 (393)
..+. . ..-..|.++++|++|++||+....
T Consensus 775 ~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N------------------------------ 824 (1057)
T PLN02919 775 RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN------------------------------ 824 (1057)
T ss_pred EEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC------------------------------
Confidence 1110 0 011258999999999999998754
Q ss_pred CCCCceEEEECCCCcEEEEee-CC------------CCCccEE-EEEeCCEEEEEecCCCeEEEEeCCCCC
Q 016199 332 GKSSSGVFIVDLDGKPIAHYY-DP------------EMSLISS-AIKIGDHLYCGSVHHRGILHLDVNQHP 388 (393)
Q Consensus 332 ~~~~~~v~~~d~~g~~~~~~~-d~------------~~~~~~~-~~~~~g~Lyigs~~~~~i~~~~~~~~~ 388 (393)
+.|.++|+++..+..+. .+ .+..... +...+|+||++...++.|.++++.+..
T Consensus 825 ----~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 825 ----HKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred ----CEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 46888888765554332 11 0222333 344568999999999999999987654
No 7
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.60 E-value=5.4e-13 Score=119.53 Aligned_cols=243 Identities=11% Similarity=0.084 Sum_probs=171.1
Q ss_pred ccCceEEecCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecC----CCceeeeEECCCCCCCCceE
Q 016199 71 LQGSEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINT----GGRPLGIAFANSDPDADRIT 146 (393)
Q Consensus 71 l~~~~~l~~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~----~~~p~gl~~d~~G~~~~~~~ 146 (393)
.-+++++..|.=..|..|.+++||. .|+....-.|.|+++++.. ++.|.-. ....+...||+.| +
T Consensus 92 tGev~~ypLg~Ga~Phgiv~gpdg~-~Witd~~~aI~R~dpkt~e----vt~f~lp~~~a~~nlet~vfD~~G------~ 160 (353)
T COG4257 92 TGEVETYPLGSGASPHGIVVGPDGS-AWITDTGLAIGRLDPKTLE----VTRFPLPLEHADANLETAVFDPWG------N 160 (353)
T ss_pred CCceEEEecCCCCCCceEEECCCCC-eeEecCcceeEEecCcccc----eEEeecccccCCCcccceeeCCCc------c
Confidence 3455666666557899999999998 7776655489999998877 7777533 2345678999999 9
Q ss_pred EEEEeCCCceE-EEeCCc--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCC
Q 016199 147 MIVADAYKGLL-KISGNS--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPV 223 (393)
Q Consensus 147 L~v~~~~~gl~-~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~ 223 (393)
||+... .|.+ ++|+.. ++++... +| ..+++|++.+||.+|++.. ....|-++|+.
T Consensus 161 lWFt~q-~G~yGrLdPa~~~i~vfpaP-qG---~gpyGi~atpdGsvwyasl-----------------agnaiaridp~ 218 (353)
T COG4257 161 LWFTGQ-IGAYGRLDPARNVISVFPAP-QG---GGPYGICATPDGSVWYASL-----------------AGNAIARIDPF 218 (353)
T ss_pred EEEeec-cccceecCcccCceeeeccC-CC---CCCcceEECCCCcEEEEec-----------------cccceEEcccc
Confidence 999854 4433 778755 4444322 33 3477999999999999962 23468899998
Q ss_pred CCeEEEEecCcc---CCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeee-eccCCCCCCeEEECCCCCEEEEEe
Q 016199 224 TKETKVLVSDLY---FANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKF-IETLPGLPDNIRYDGEGHYLIALA 299 (393)
Q Consensus 224 t~~~~~~~~~l~---~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~-~~~l~g~P~~i~~d~~G~lwva~~ 299 (393)
++..+++..... -...|-.++.| .+|+++..++++.+|+.... +-..+ .......|..+.+|..|++|....
T Consensus 219 ~~~aev~p~P~~~~~gsRriwsdpig-~~wittwg~g~l~rfdPs~~---sW~eypLPgs~arpys~rVD~~grVW~sea 294 (353)
T COG4257 219 AGHAEVVPQPNALKAGSRRIWSDPIG-RAWITTWGTGSLHRFDPSVT---SWIEYPLPGSKARPYSMRVDRHGRVWLSEA 294 (353)
T ss_pred cCCcceecCCCcccccccccccCccC-cEEEeccCCceeeEeCcccc---cceeeeCCCCCCCcceeeeccCCcEEeecc
Confidence 886555432211 12335556667 69999999999999997532 22222 112223688999999999999877
Q ss_pred cCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCCC-CccEEEEEeCCEEEEEecCCCe
Q 016199 300 TEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPEM-SLISSAIKIGDHLYCGSVHHRG 378 (393)
Q Consensus 300 ~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~~-~~~~~~~~~~g~Lyigs~~~~~ 378 (393)
.. +.|.+||++...+..|.-+.. ..........|.+|++.-..+.
T Consensus 295 ~a----------------------------------gai~rfdpeta~ftv~p~pr~n~gn~ql~gr~ge~W~~e~gvd~ 340 (353)
T COG4257 295 DA----------------------------------GAIGRFDPETARFTVLPIPRPNSGNIQLDGRPGELWFTEAGVDA 340 (353)
T ss_pred cc----------------------------------CceeecCcccceEEEecCCCCCCCceeccCCCCceeecccCcce
Confidence 54 679999999999999886652 2233334456899999877787
Q ss_pred EEEEeC
Q 016199 379 ILHLDV 384 (393)
Q Consensus 379 i~~~~~ 384 (393)
+.+++.
T Consensus 341 lv~~r~ 346 (353)
T COG4257 341 LVTTRI 346 (353)
T ss_pred eEEEEe
Confidence 777653
No 8
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.59 E-value=1.6e-12 Score=126.13 Aligned_cols=261 Identities=17% Similarity=0.213 Sum_probs=157.9
Q ss_pred cccccCceEEecCccCCCceEEEecCCCEEEEEec----CCeEEEEEcCCCCCcc-eeeeeecCCCceeeeEECCCCCCC
Q 016199 68 ERMLQGSEKVGYGVLKGPEDLLYDAHSKLIYTGCE----DGWIKRVTLNDSPADS-LVHNWINTGGRPLGIAFANSDPDA 142 (393)
Q Consensus 68 ~~~l~~~~~l~~g~~~~Pe~ia~d~~g~~L~~~~~----~g~I~~~~~~~~~~~~-~~~~~~~~~~~p~gl~~d~~G~~~ 142 (393)
+..|...+.+.. ...|..+++++++++||+... .+.|..|..+...+.. .+......+..|..++++++|
T Consensus 24 ~g~l~~~~~~~~--~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g--- 98 (345)
T PF10282_consen 24 TGTLTLVQTVAE--GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDG--- 98 (345)
T ss_dssp TTEEEEEEEEEE--SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTS---
T ss_pred CCCceEeeeecC--CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCC---
Confidence 455555555444 378999999999999999877 3577776665431111 122233356789999999998
Q ss_pred CceEEEEEeCCCc---eEEEeCCc-eEEEee--c-------cCCccccccccEEEcCCC-cEEEEeCCCccchhhheehh
Q 016199 143 DRITMIVADAYKG---LLKISGNS-TVLLTD--E-------AEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDI 208 (393)
Q Consensus 143 ~~~~L~v~~~~~g---l~~id~~g-~~~l~~--~-------~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~ 208 (393)
+.||+++...| ++.++.+| ...... . .......++|.+.++||| .+|++|.+
T Consensus 99 --~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG------------ 164 (345)
T PF10282_consen 99 --RFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG------------ 164 (345)
T ss_dssp --SEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT------------
T ss_pred --CEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC------------
Confidence 36888876555 45566666 222211 0 111234678999999998 58888843
Q ss_pred cccCCCcEEEEEeCCC--CeEEEE----ecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeee--eccCC
Q 016199 209 FEGKPNGRLLSFDPVT--KETKVL----VSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKF--IETLP 280 (393)
Q Consensus 209 ~e~~~~g~l~~~d~~t--~~~~~~----~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~--~~~l~ 280 (393)
..+|+.|+.+. +++... ......|..+++++|++++|+.+...+.|..|+++.+ .+..+.. +..+|
T Consensus 165 -----~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~-~g~~~~~~~~~~~~ 238 (345)
T PF10282_consen 165 -----ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPS-DGSLTEIQTISTLP 238 (345)
T ss_dssp -----TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT-TTEEEEEEEEESCE
T ss_pred -----CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeeccc-CCceeEEEEeeecc
Confidence 34566665543 335431 2334568899999999999999999999999998732 1222211 11121
Q ss_pred ----C--CCCeEEECCCCCE-EEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCC-CcEE--EE
Q 016199 281 ----G--LPDNIRYDGEGHY-LIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLD-GKPI--AH 350 (393)
Q Consensus 281 ----g--~P~~i~~d~~G~l-wva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~--~~ 350 (393)
+ .|.+|++++||++ |++.. +.+. =.++.+|.+ |++. ..
T Consensus 239 ~~~~~~~~~~~i~ispdg~~lyvsnr-~~~s-------------------------------I~vf~~d~~~g~l~~~~~ 286 (345)
T PF10282_consen 239 EGFTGENAPAEIAISPDGRFLYVSNR-GSNS-------------------------------ISVFDLDPATGTLTLVQT 286 (345)
T ss_dssp TTSCSSSSEEEEEE-TTSSEEEEEEC-TTTE-------------------------------EEEEEECTTTTTEEEEEE
T ss_pred ccccccCCceeEEEecCCCEEEEEec-cCCE-------------------------------EEEEEEecCCCceEEEEE
Confidence 1 4677999999994 55544 3211 025666554 4432 22
Q ss_pred eeC-CCCCccEEEEEeCCEEEEEecCCCeEEEEeCC
Q 016199 351 YYD-PEMSLISSAIKIGDHLYCGSVHHRGILHLDVN 385 (393)
Q Consensus 351 ~~d-~~~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~ 385 (393)
+.. ...+....+.+++.+||+++-.++.|..|+++
T Consensus 287 ~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 287 VPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 332 22222222334668899999999999998774
No 9
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.57 E-value=7.1e-12 Score=120.79 Aligned_cols=256 Identities=13% Similarity=0.117 Sum_probs=152.9
Q ss_pred ccccCceEEecCccCCCceEEEecCCCEEEEEec-CCeEEEEEcCC-CCCcceeeeeecCCCceeeeEECCCCCCCCceE
Q 016199 69 RMLQGSEKVGYGVLKGPEDLLYDAHSKLIYTGCE-DGWIKRVTLND-SPADSLVHNWINTGGRPLGIAFANSDPDADRIT 146 (393)
Q Consensus 69 ~~l~~~~~l~~g~~~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~-~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~ 146 (393)
..+...+.+..+ .+|..++++++++.||++.. +++|..|+.+. +. ..........+.|.+++++++| +.
T Consensus 23 g~l~~~~~~~~~--~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~--l~~~~~~~~~~~p~~i~~~~~g-----~~ 93 (330)
T PRK11028 23 GALTLLQVVDVP--GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA--LTFAAESPLPGSPTHISTDHQG-----RF 93 (330)
T ss_pred CceeeeeEEecC--CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc--eEEeeeecCCCCceEEEECCCC-----CE
Confidence 344444555443 46888999999999999875 67787777652 22 0011111234679999999998 35
Q ss_pred EEEEeCCCc-eEEEeC--Cc-eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEe
Q 016199 147 MIVADAYKG-LLKISG--NS-TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFD 221 (393)
Q Consensus 147 L~v~~~~~g-l~~id~--~g-~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d 221 (393)
+|++....+ |..++. +| .........+ ...++.++++++| .+|+++ ...+.|..||
T Consensus 94 l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~--~~~~~~~~~~p~g~~l~v~~-----------------~~~~~v~v~d 154 (330)
T PRK11028 94 LFSASYNANCVSVSPLDKDGIPVAPIQIIEG--LEGCHSANIDPDNRTLWVPC-----------------LKEDRIRLFT 154 (330)
T ss_pred EEEEEcCCCeEEEEEECCCCCCCCceeeccC--CCcccEeEeCCCCCEEEEee-----------------CCCCEEEEEE
Confidence 788865443 555543 44 2111111222 2347889999998 577776 2345677777
Q ss_pred CCC-CeEEE------EecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeee--ccCC------CCCCeE
Q 016199 222 PVT-KETKV------LVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFI--ETLP------GLPDNI 286 (393)
Q Consensus 222 ~~t-~~~~~------~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~--~~l~------g~P~~i 286 (393)
.++ +.+.. -......|.++++++||+++|+++...+.|..|+++.. .+..+... ...| ..|..+
T Consensus 155 ~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~i 233 (330)
T PRK11028 155 LSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDP-HGEIECVQTLDMMPADFSDTRWAADI 233 (330)
T ss_pred ECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCC-CCCEEEEEEEecCCCcCCCCccceeE
Confidence 654 33221 11123568999999999999999998999999998632 12222211 1111 234468
Q ss_pred EECCCCC-EEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEE---EeeCCCCCccEEE
Q 016199 287 RYDGEGH-YLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIA---HYYDPEMSLISSA 362 (393)
Q Consensus 287 ~~d~~G~-lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~---~~~d~~~~~~~~~ 362 (393)
+++++|+ +|++....+ . =.++.++.++.... .+..+.....-.+
T Consensus 234 ~~~pdg~~lyv~~~~~~-~-------------------------------I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~ 281 (330)
T PRK11028 234 HITPDGRHLYACDRTAS-L-------------------------------ISVFSVSEDGSVLSFEGHQPTETQPRGFNI 281 (330)
T ss_pred EECCCCCEEEEecCCCC-e-------------------------------EEEEEEeCCCCeEEEeEEEeccccCCceEE
Confidence 8999998 555432221 0 12555566664333 2322222222233
Q ss_pred EEeCCEEEEEecCCCeEEEEeCC
Q 016199 363 IKIGDHLYCGSVHHRGILHLDVN 385 (393)
Q Consensus 363 ~~~~g~Lyigs~~~~~i~~~~~~ 385 (393)
.+++.+||+++..++.|..++++
T Consensus 282 ~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 282 DHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCCCCEEEEEEccCCcEEEEEEc
Confidence 45667999998878888888764
No 10
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.54 E-value=2.7e-12 Score=140.15 Aligned_cols=189 Identities=16% Similarity=0.306 Sum_probs=133.3
Q ss_pred cCCCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeec-----------------CCCceeeeEECC-CCCCC
Q 016199 82 LKGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWIN-----------------TGGRPLGIAFAN-SDPDA 142 (393)
Q Consensus 82 ~~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~-----------------~~~~p~gl~~d~-~G~~~ 142 (393)
+..|.+|+++++++.||+++. +++|.+++..++. +..+.. ....|.++++++ +|
T Consensus 623 f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~----V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g--- 695 (1057)
T PLN02919 623 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNET----VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNE--- 695 (1057)
T ss_pred cCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE----EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCC---
Confidence 567999999998888898775 5688889887654 443321 123689999998 67
Q ss_pred CceEEEEEeCCC-ceEEEeCCc--eEEEeec-----cCC-----ccccccccEEEcCCCc-EEEEeCCCccchhhheehh
Q 016199 143 DRITMIVADAYK-GLLKISGNS--TVLLTDE-----AEG-----QKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDI 208 (393)
Q Consensus 143 ~~~~L~v~~~~~-gl~~id~~g--~~~l~~~-----~~g-----~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~ 208 (393)
.+||++... .|.+++..+ ...+... ..+ ..+..|++|+++++|. ||++|
T Consensus 696 ---~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVAD-------------- 758 (1057)
T PLN02919 696 ---KVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIAD-------------- 758 (1057)
T ss_pred ---eEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEE--------------
Confidence 899998754 477888754 3222210 011 1245789999999985 99998
Q ss_pred cccCCCcEEEEEeCCCCeEEEEec----------------------CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecC
Q 016199 209 FEGKPNGRLLSFDPVTKETKVLVS----------------------DLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKG 266 (393)
Q Consensus 209 ~e~~~~g~l~~~d~~t~~~~~~~~----------------------~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g 266 (393)
..+++|.+||++++..+.+.. .+..|.|+++++||+ +||+++.+++|.+|+.++
T Consensus 759 ---s~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~t 834 (1057)
T PLN02919 759 ---SESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPAT 834 (1057)
T ss_pred ---CCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCC
Confidence 445689999988765443321 134689999999994 999999999999999864
Q ss_pred CCCcceeeeec-c------------CCCCCCeEEECCCCCEEEEEecC
Q 016199 267 KNAGRVEKFIE-T------------LPGLPDNIRYDGEGHYLIALATE 301 (393)
Q Consensus 267 ~~~~~~~~~~~-~------------l~g~P~~i~~d~~G~lwva~~~~ 301 (393)
.. ...+.. + .-..|.++++|++|++||+....
T Consensus 835 g~---v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N 879 (1057)
T PLN02919 835 KR---VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN 879 (1057)
T ss_pred Ce---EEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC
Confidence 32 111110 0 01258999999999999987644
No 11
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.51 E-value=4.6e-12 Score=111.16 Aligned_cols=234 Identities=18% Similarity=0.230 Sum_probs=143.9
Q ss_pred EEEecC-CCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCce-eeeEEC-CCCCCCCceEEEEEeCCCceEEEeCCc-
Q 016199 88 LLYDAH-SKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRP-LGIAFA-NSDPDADRITMIVADAYKGLLKISGNS- 163 (393)
Q Consensus 88 ia~d~~-g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p-~gl~~d-~~G~~~~~~~L~v~~~~~gl~~id~~g- 163 (393)
+.|+.+ +.++|+....|.|.|+|..++. +.... ..+.| .+..+- .+|+ ..++..-+......+.++
T Consensus 20 p~w~~~~~sLl~VDi~ag~v~r~D~~qn~----v~ra~-ie~p~~ag~ilpv~~~~-----q~~~v~~G~kf~i~nwd~~ 89 (310)
T KOG4499|consen 20 PHWDVERQSLLYVDIEAGEVHRYDIEQNK----VYRAK-IEGPPSAGFILPVEGGP-----QEFAVGCGSKFVIVNWDGV 89 (310)
T ss_pred CceEEecceEEEEEeccCceehhhhhhhh----eEEEE-EecCcceeEEEEecCCC-----ceEEEeecceEEEEEcccc
Confidence 345553 3467888889999999887655 33321 11221 222221 1221 344443344444444443
Q ss_pred ---eEEEee--ccC-CccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCC
Q 016199 164 ---TVLLTD--EAE-GQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFA 237 (393)
Q Consensus 164 ---~~~l~~--~~~-g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ 237 (393)
..++.+ +.+ ...-+.-|+-.+||+|+.|.+.++. .-+.+|. -.|.|+++-+ .++++.+-..+..+
T Consensus 90 ~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad-------~~~~le~-~~g~Ly~~~~-~h~v~~i~~~v~Is 160 (310)
T KOG4499|consen 90 SESAKVYRTLFEVQPDRKKNRLNDGKVDPDGRYYGGTMAD-------FGDDLEP-IGGELYSWLA-GHQVELIWNCVGIS 160 (310)
T ss_pred cceeeeeeeccccCchHHhcccccCccCCCCceeeeeecc-------ccccccc-cccEEEEecc-CCCceeeehhccCC
Confidence 222222 111 1122334666899999999886432 1122332 2344555544 57888888888899
Q ss_pred CcEEEcCCCCEEEEEeCCCCeEEEEE--ecCCCCcceeeeec--c----CCCCCCeEEECCCCCEEEEEecCcchhhhhh
Q 016199 238 NGVVLSPDQTHLVYCETSMRRCRKFY--IKGKNAGRVEKFIE--T----LPGLPDNIRYDGEGHYLIALATEFSTYWDLA 309 (393)
Q Consensus 238 ngi~~s~dg~~l~v~~~~~~ri~~~~--~~g~~~~~~~~~~~--~----l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~ 309 (393)
||++++.|.+..|+.++.+..|..|+ ..+......+++.+ + .+-.|||+++|.+|++||+++.+
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng-------- 232 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNG-------- 232 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecC--------
Confidence 99999999999999999999995555 54433333333322 1 23479999999999999999976
Q ss_pred hcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCC--CCccEEEEEeCCEEEEEec
Q 016199 310 YRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPE--MSLISSAIKIGDHLYCGSV 374 (393)
Q Consensus 310 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~--~~~~~~~~~~~g~Lyigs~ 374 (393)
+.|+++|+ .|+++..+..|. ...++++...=+.||++..
T Consensus 233 --------------------------~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~a 274 (310)
T KOG4499|consen 233 --------------------------GTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTTA 274 (310)
T ss_pred --------------------------cEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEeh
Confidence 56999998 689988887775 3333443333377888864
No 12
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.49 E-value=7.6e-11 Score=109.54 Aligned_cols=261 Identities=16% Similarity=0.186 Sum_probs=164.1
Q ss_pred ccccCceEEecCccCCCceEEEecCCCEEEEEecC---CeEEEEEcCCCCCcceeeee---ecCCCceeeeEECCCCCCC
Q 016199 69 RMLQGSEKVGYGVLKGPEDLLYDAHSKLIYTGCED---GWIKRVTLNDSPADSLVHNW---INTGGRPLGIAFANSDPDA 142 (393)
Q Consensus 69 ~~l~~~~~l~~g~~~~Pe~ia~d~~g~~L~~~~~~---g~I~~~~~~~~~~~~~~~~~---~~~~~~p~gl~~d~~G~~~ 142 (393)
+.+...+++.+ ...|.-|++++++++||++..+ |+|..|..+...+. .+.. ...+..|..+++|++|
T Consensus 28 g~l~~~~~v~~--~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~--Lt~ln~~~~~g~~p~yvsvd~~g--- 100 (346)
T COG2706 28 GELSLLQLVAE--LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGR--LTFLNRQTLPGSPPCYVSVDEDG--- 100 (346)
T ss_pred cccchhhhccc--cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCe--EEEeeccccCCCCCeEEEECCCC---
Confidence 34444444433 4778889999999999998764 56665555432111 2222 1234456999999999
Q ss_pred CceEEEEEeCCCc---eEEEeCCc-eEEE---eeccC-----CccccccccEEEcCCC-cEEEEeCCCccchhhheehhc
Q 016199 143 DRITMIVADAYKG---LLKISGNS-TVLL---TDEAE-----GQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIF 209 (393)
Q Consensus 143 ~~~~L~v~~~~~g---l~~id~~g-~~~l---~~~~~-----g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~ 209 (393)
+.+++++...| ++.+..+| .... ....+ .....++|...++|+| .+++.|.+
T Consensus 101 --~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG------------- 165 (346)
T COG2706 101 --RFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG------------- 165 (346)
T ss_pred --CEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC-------------
Confidence 23566655555 44455567 2211 11111 1223457888999999 57777743
Q ss_pred ccCCCcEEEEEeCCCCeEEEE----ecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeee--ccCC-CC
Q 016199 210 EGKPNGRLLSFDPVTKETKVL----VSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFI--ETLP-GL 282 (393)
Q Consensus 210 e~~~~g~l~~~d~~t~~~~~~----~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~--~~l~-g~ 282 (393)
..+++.|+.+.+.++.. ...-..|..|+|.|++++.|+....+++|..|..++. .++.+.+. ..+| .+
T Consensus 166 ----~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~-~g~~~~lQ~i~tlP~dF 240 (346)
T COG2706 166 ----TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA-VGKFEELQTIDTLPEDF 240 (346)
T ss_pred ----CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC-CceEEEeeeeccCcccc
Confidence 44788777766665543 2334568889999999999999999999999988753 34444332 1222 11
Q ss_pred C-----CeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeC---C
Q 016199 283 P-----DNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYD---P 354 (393)
Q Consensus 283 P-----~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d---~ 354 (393)
. ..|.+++||++..+++.+.+.+ .++++|++|..++...- .
T Consensus 241 ~g~~~~aaIhis~dGrFLYasNRg~dsI-------------------------------~~f~V~~~~g~L~~~~~~~te 289 (346)
T COG2706 241 TGTNWAAAIHISPDGRFLYASNRGHDSI-------------------------------AVFSVDPDGGKLELVGITPTE 289 (346)
T ss_pred CCCCceeEEEECCCCCEEEEecCCCCeE-------------------------------EEEEEcCCCCEEEEEEEeccC
Confidence 1 2377899999888888664321 38889998776555432 2
Q ss_pred CCCccEEEE-EeCCEEEEEecCCCeEEEEeCCCC
Q 016199 355 EMSLISSAI-KIGDHLYCGSVHHRGILHLDVNQH 387 (393)
Q Consensus 355 ~~~~~~~~~-~~~g~Lyigs~~~~~i~~~~~~~~ 387 (393)
....-.+.+ ..++.|+..+-.++.|.+|..++.
T Consensus 290 g~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 290 GQFPRDFNINPSGRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred CcCCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence 121122333 345678888888888888876654
No 13
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.47 E-value=8.4e-12 Score=115.22 Aligned_cols=185 Identities=21% Similarity=0.377 Sum_probs=127.5
Q ss_pred eeeeEECC-CCCCCCceEEEEEeCC-CceEEEeCCc-eEEEeeccCCccccccccEEEc-CCCcEEEEeCCCccchhhhe
Q 016199 130 PLGIAFAN-SDPDADRITMIVADAY-KGLLKISGNS-TVLLTDEAEGQKFKLTDGVDVA-DDGMIYFTDASNKYYLREYI 205 (393)
Q Consensus 130 p~gl~~d~-~G~~~~~~~L~v~~~~-~gl~~id~~g-~~~l~~~~~g~~~~~~~~l~~d-~dG~l~~td~~~~~~~~~~~ 205 (393)
|.|+++++ +| .||+.|.. +.|+++++++ ...... ..+ +++++++ ++|.+|+++.
T Consensus 2 ~Egp~~d~~~g------~l~~~D~~~~~i~~~~~~~~~~~~~~-~~~-----~~G~~~~~~~g~l~v~~~---------- 59 (246)
T PF08450_consen 2 GEGPVWDPRDG------RLYWVDIPGGRIYRVDPDTGEVEVID-LPG-----PNGMAFDRPDGRLYVADS---------- 59 (246)
T ss_dssp EEEEEEETTTT------EEEEEETTTTEEEEEETTTTEEEEEE-SSS-----EEEEEEECTTSEEEEEET----------
T ss_pred CcceEEECCCC------EEEEEEcCCCEEEEEECCCCeEEEEe-cCC-----CceEEEEccCCEEEEEEc----------
Confidence 56888997 88 99999974 4599999887 322221 111 6688998 7899999962
Q ss_pred ehhcccCCCcEEEEEeCCCCeEEEEec------CccCCCcEEEcCCCCEEEEEeCCC--------CeEEEEEecCCCCcc
Q 016199 206 LDIFEGKPNGRLLSFDPVTKETKVLVS------DLYFANGVVLSPDQTHLVYCETSM--------RRCRKFYIKGKNAGR 271 (393)
Q Consensus 206 ~~~~e~~~~g~l~~~d~~t~~~~~~~~------~l~~~ngi~~s~dg~~l~v~~~~~--------~ri~~~~~~g~~~~~ 271 (393)
+++..+|+++++++.+.. ....||++++++||+ +|+++... ++|++++.+ ++
T Consensus 60 ---------~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~----~~ 125 (246)
T PF08450_consen 60 ---------GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD----GK 125 (246)
T ss_dssp ---------TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT----SE
T ss_pred ---------CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC----Ce
Confidence 346666999998877644 356799999999995 99998765 679999875 33
Q ss_pred eeeeeccCCCCCCeEEECCCCC-EEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC--CCcEE
Q 016199 272 VEKFIETLPGLPDNIRYDGEGH-YLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL--DGKPI 348 (393)
Q Consensus 272 ~~~~~~~l~g~P~~i~~d~~G~-lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~--~g~~~ 348 (393)
.....+.+ ..|+||+++++|+ +|++.... +.|++++. ++..+
T Consensus 126 ~~~~~~~~-~~pNGi~~s~dg~~lyv~ds~~----------------------------------~~i~~~~~~~~~~~~ 170 (246)
T PF08450_consen 126 VTVVADGL-GFPNGIAFSPDGKTLYVADSFN----------------------------------GRIWRFDLDADGGEL 170 (246)
T ss_dssp EEEEEEEE-SSEEEEEEETTSSEEEEEETTT----------------------------------TEEEEEEEETTTCCE
T ss_pred EEEEecCc-ccccceEECCcchheeeccccc----------------------------------ceeEEEeccccccce
Confidence 44454444 3799999999997 67765533 45777765 34412
Q ss_pred ---EEeeC-CC-CCccEE-EEEeCCEEEEEecCCCeEEEEeCC
Q 016199 349 ---AHYYD-PE-MSLISS-AIKIGDHLYCGSVHHRGILHLDVN 385 (393)
Q Consensus 349 ---~~~~d-~~-~~~~~~-~~~~~g~Lyigs~~~~~i~~~~~~ 385 (393)
+.+.+ +. ...... ....+|+||++...+..|.+++.+
T Consensus 171 ~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 171 SNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp EEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred eeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence 22322 22 212333 344569999999999999999976
No 14
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.43 E-value=1.7e-10 Score=112.87 Aligned_cols=172 Identities=16% Similarity=0.225 Sum_probs=115.6
Q ss_pred ccCCCceEEEecCCCEEEEEec------------CC-eEEEEEcCCCCCc-ceeeeeecCCCceeeeEECCCCCCCCceE
Q 016199 81 VLKGPEDLLYDAHSKLIYTGCE------------DG-WIKRVTLNDSPAD-SLVHNWINTGGRPLGIAFANSDPDADRIT 146 (393)
Q Consensus 81 ~~~~Pe~ia~d~~g~~L~~~~~------------~g-~I~~~~~~~~~~~-~~~~~~~~~~~~p~gl~~d~~G~~~~~~~ 146 (393)
.+..|..|++|++|+ ||++.. .+ +|++++..++.+. ...+.+......|.||++.++|
T Consensus 12 ~~~~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G------- 83 (367)
T TIGR02604 12 LLRNPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG------- 83 (367)
T ss_pred ccCCCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-------
Confidence 478999999999997 888852 23 8998875432211 1134555445679999998877
Q ss_pred EEEEeCCCceEEE-eCCc-------eEEEeeccCCc---cccccccEEEcCCCcEEEEeCCCccc--hhhheehhcccCC
Q 016199 147 MIVADAYKGLLKI-SGNS-------TVLLTDEAEGQ---KFKLTDGVDVADDGMIYFTDASNKYY--LREYILDIFEGKP 213 (393)
Q Consensus 147 L~v~~~~~gl~~i-d~~g-------~~~l~~~~~g~---~~~~~~~l~~d~dG~l~~td~~~~~~--~~~~~~~~~e~~~ 213 (393)
|||++ ...|+++ +.++ .+++....... ....++++++++||.|||++.+.... ......+..+...
T Consensus 84 lyV~~-~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~ 162 (367)
T TIGR02604 84 VYVAT-PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGL 162 (367)
T ss_pred EEEeC-CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCccccc
Confidence 99985 5568877 4432 23444333322 23458899999999999987643110 0000001112223
Q ss_pred CcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEE
Q 016199 214 NGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKF 262 (393)
Q Consensus 214 ~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~ 262 (393)
.|++++|+|++++.+.+..++..|+|++++++| .+|+++.......+.
T Consensus 163 ~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G-~l~~tdn~~~~~~~i 210 (367)
T TIGR02604 163 GGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWG-DVFFCDNDDPPLCRV 210 (367)
T ss_pred CceEEEEecCCCeEEEEecCcCCCccceECCCC-CEEEEccCCCceeEE
Confidence 578999999999999999999999999999998 578888765544443
No 15
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.43 E-value=1.8e-10 Score=111.80 Aligned_cols=209 Identities=15% Similarity=0.215 Sum_probs=130.3
Q ss_pred ccccCceEEecCccCCCceEEEecCCCEEEEEec-CCeEEEEEcCCC-CCcceeeeee----------cCCCceeeeEEC
Q 016199 69 RMLQGSEKVGYGVLKGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDS-PADSLVHNWI----------NTGGRPLGIAFA 136 (393)
Q Consensus 69 ~~l~~~~~l~~g~~~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~-~~~~~~~~~~----------~~~~~p~gl~~d 136 (393)
..|.....+..+. ..|-.++++++++.||++.. +|.|..++.+.. ........+. .....|+.+.++
T Consensus 74 g~L~~~~~~~~~g-~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~ 152 (345)
T PF10282_consen 74 GTLTLLNSVPSGG-SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFS 152 (345)
T ss_dssp TEEEEEEEEEESS-SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-
T ss_pred ceeEEeeeeccCC-CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEEC
Confidence 4566666665333 68999999999999999986 777877777652 2000011111 123568999999
Q ss_pred CCCCCCCceEEEEEeCCC-ceEEEeC--Cc--eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcc
Q 016199 137 NSDPDADRITMIVADAYK-GLLKISG--NS--TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFE 210 (393)
Q Consensus 137 ~~G~~~~~~~L~v~~~~~-gl~~id~--~g--~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e 210 (393)
++| +.+|+++.+. .|..++. ++ +... ....-.+...|..++++++| .+|+.+ |
T Consensus 153 pdg-----~~v~v~dlG~D~v~~~~~~~~~~~l~~~-~~~~~~~G~GPRh~~f~pdg~~~Yv~~---------------e 211 (345)
T PF10282_consen 153 PDG-----RFVYVPDLGADRVYVYDIDDDTGKLTPV-DSIKVPPGSGPRHLAFSPDGKYAYVVN---------------E 211 (345)
T ss_dssp TTS-----SEEEEEETTTTEEEEEEE-TTS-TEEEE-EEEECSTTSSEEEEEE-TTSSEEEEEE---------------T
T ss_pred CCC-----CEEEEEecCCCEEEEEEEeCCCceEEEe-eccccccCCCCcEEEEcCCcCEEEEec---------------C
Confidence 998 3689988643 4555543 33 3221 11122223457789999998 688874 3
Q ss_pred cCCCcEEEEEeCCCCeEEEEec------C---ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeee--eccC
Q 016199 211 GKPNGRLLSFDPVTKETKVLVS------D---LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKF--IETL 279 (393)
Q Consensus 211 ~~~~g~l~~~d~~t~~~~~~~~------~---l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~--~~~l 279 (393)
....-.++.++..++.++.... + ...+.+|+++|||++||++++..+.|..|+++.. .+..+.. ....
T Consensus 212 ~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~-~g~l~~~~~~~~~ 290 (345)
T PF10282_consen 212 LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPA-TGTLTLVQTVPTG 290 (345)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTT-TTTEEEEEEEEES
T ss_pred CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecC-CCceEEEEEEeCC
Confidence 3444456666755676654321 1 2257889999999999999999999999999643 2222221 1122
Q ss_pred CCCCCeEEECCCCC-EEEEEec
Q 016199 280 PGLPDNIRYDGEGH-YLIALAT 300 (393)
Q Consensus 280 ~g~P~~i~~d~~G~-lwva~~~ 300 (393)
...|++++++++|+ +||+...
T Consensus 291 G~~Pr~~~~s~~g~~l~Va~~~ 312 (345)
T PF10282_consen 291 GKFPRHFAFSPDGRYLYVANQD 312 (345)
T ss_dssp SSSEEEEEE-TTSSEEEEEETT
T ss_pred CCCccEEEEeCCCCEEEEEecC
Confidence 34699999999999 4455443
No 16
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.38 E-value=2e-09 Score=101.02 Aligned_cols=248 Identities=15% Similarity=0.102 Sum_probs=150.9
Q ss_pred CCCceEEEecCCCEEEEE-ecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC-CceEEEe
Q 016199 83 KGPEDLLYDAHSKLIYTG-CEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY-KGLLKIS 160 (393)
Q Consensus 83 ~~Pe~ia~d~~g~~L~~~-~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~-~gl~~id 160 (393)
..|.+++++++|+.+|+. ..++.|..|+..++. ..........+..++++++| +.+|++... +.+..+|
T Consensus 31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~----~~~~~~~~~~~~~~~~~~~g-----~~l~~~~~~~~~l~~~d 101 (300)
T TIGR03866 31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGE----VIGTLPSGPDPELFALHPNG-----KILYIANEDDNLVTVID 101 (300)
T ss_pred CCCCceEECCCCCEEEEEECCCCeEEEEECCCCc----EEEeccCCCCccEEEECCCC-----CEEEEEcCCCCeEEEEE
Confidence 457789999999878765 457889999987654 33222223457788999988 246776543 4477788
Q ss_pred CCceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcE
Q 016199 161 GNSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGV 240 (393)
Q Consensus 161 ~~g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi 240 (393)
.+..+.+.....+ ..+++++++++|.++++.. .....++.+|..+++.......-..+..+
T Consensus 102 ~~~~~~~~~~~~~---~~~~~~~~~~dg~~l~~~~----------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 162 (300)
T TIGR03866 102 IETRKVLAEIPVG---VEPEGMAVSPDGKIVVNTS----------------ETTNMAHFIDTKTYEIVDNVLVDQRPRFA 162 (300)
T ss_pred CCCCeEEeEeeCC---CCcceEEECCCCCEEEEEe----------------cCCCeEEEEeCCCCeEEEEEEcCCCccEE
Confidence 7652122111111 2356889999997666531 11224666788766554322222457889
Q ss_pred EEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeee-cc---CCCCCCeEEECCCCCE-EEEEecCcchhhhhhhcCcch
Q 016199 241 VLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFI-ET---LPGLPDNIRYDGEGHY-LIALATEFSTYWDLAYRYPFI 315 (393)
Q Consensus 241 ~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~-~~---l~g~P~~i~~d~~G~l-wva~~~~r~~~~~~~~~~~~~ 315 (393)
++++||+.++++....++|..|++...+.-....+. .. ....|.+++++++|++ |++....
T Consensus 163 ~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~-------------- 228 (300)
T TIGR03866 163 EFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA-------------- 228 (300)
T ss_pred EECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCC--------------
Confidence 999999988888767789999998643211110111 00 1123567889999985 5554322
Q ss_pred hhhhhhhhhhhCCCCCCCCCceEEEECCC-CcEEEEeeCCCCCccEEEEEeCCEEEEEecCCCeEEEEeCCCCCCCCC
Q 016199 316 RKVSGMVVRYLGMPPMGKSSSGVFIVDLD-GKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDVNQHPARAI 392 (393)
Q Consensus 316 r~~~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~~~~~~~ 392 (393)
+.+..+|.+ ++++..+............+++.+||+++...+.|.++|+....++++
T Consensus 229 --------------------~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~ 286 (300)
T TIGR03866 229 --------------------NRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKS 286 (300)
T ss_pred --------------------CeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 346677754 555554432221111223446678888876678899999887766543
No 17
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.33 E-value=9.9e-10 Score=105.84 Aligned_cols=192 Identities=14% Similarity=0.169 Sum_probs=116.4
Q ss_pred CCCceEEEecCCCEEEEEec-CCeEEEEEcCC-CCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCc-eEEE
Q 016199 83 KGPEDLLYDAHSKLIYTGCE-DGWIKRVTLND-SPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKG-LLKI 159 (393)
Q Consensus 83 ~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~-~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g-l~~i 159 (393)
..|..++++++|+.+|++.. ++.|..|+.+. +......... .....|++++++++| +.+|+++...+ |..+
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g-----~~l~v~~~~~~~v~v~ 153 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDN-----RTLWVPCLKEDRIRLF 153 (330)
T ss_pred CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCC-----CEEEEeeCCCCEEEEE
Confidence 36889999999999998875 67788887753 2100001111 112468999999998 36788876544 5556
Q ss_pred eCC--c-eEEE-eeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEE--eCCCCeEEEEec
Q 016199 160 SGN--S-TVLL-TDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSF--DPVTKETKVLVS 232 (393)
Q Consensus 160 d~~--g-~~~l-~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~--d~~t~~~~~~~~ 232 (393)
+.+ + .... ...........+++++++++| .+|+++. ..+.|..| +..+++.+....
T Consensus 154 d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~-----------------~~~~v~v~~~~~~~~~~~~~~~ 216 (330)
T PRK11028 154 TLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE-----------------LNSSVDVWQLKDPHGEIECVQT 216 (330)
T ss_pred EECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec-----------------CCCEEEEEEEeCCCCCEEEEEE
Confidence 543 3 2110 000011112457789999998 5778752 23445544 443455433211
Q ss_pred ---------CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeecc--CCCCCCeEEECCCCCEEEEEe
Q 016199 233 ---------DLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIET--LPGLPDNIRYDGEGHYLIALA 299 (393)
Q Consensus 233 ---------~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~--l~g~P~~i~~d~~G~lwva~~ 299 (393)
+-..+.++.++|||+++|+++...+.|..|+++.+. +..+ +... ....|.+++++++|++.++..
T Consensus 217 ~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~-~~~~-~~~~~~~~~~p~~~~~~~dg~~l~va~ 292 (330)
T PRK11028 217 LDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDG-SVLS-FEGHQPTETQPRGFNIDHSGKYLIAAG 292 (330)
T ss_pred EecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCC-CeEE-EeEEEeccccCCceEECCCCCEEEEEE
Confidence 112344688999999999999888999999985321 1111 1111 123689999999998554444
No 18
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.33 E-value=1.8e-09 Score=100.42 Aligned_cols=210 Identities=15% Similarity=0.193 Sum_probs=133.2
Q ss_pred ccccCceEEecCccCCCceEEEecCCCEEEEEec-CCeEEEEEcCC-CCCcceeeeeecCCC---------ceeeeEECC
Q 016199 69 RMLQGSEKVGYGVLKGPEDLLYDAHSKLIYTGCE-DGWIKRVTLND-SPADSLVHNWINTGG---------RPLGIAFAN 137 (393)
Q Consensus 69 ~~l~~~~~l~~g~~~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~-~~~~~~~~~~~~~~~---------~p~gl~~d~ 137 (393)
+.|+...+...- -..|-.+++|++|+.||++.. .|.|.++..+. +.-...+..+.+.+. .++...+++
T Consensus 76 G~Lt~ln~~~~~-g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP 154 (346)
T COG2706 76 GRLTFLNRQTLP-GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP 154 (346)
T ss_pred CeEEEeeccccC-CCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC
Confidence 455444333222 256788999999999998886 45566665533 221111122223222 256788899
Q ss_pred CCCCCCceEEEEEeCC-CceEEEeC-Cc-eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCC
Q 016199 138 SDPDADRITMIVADAY-KGLLKISG-NS-TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKP 213 (393)
Q Consensus 138 ~G~~~~~~~L~v~~~~-~gl~~id~-~g-~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~ 213 (393)
+| +.|+++|-+ ..|+.++. +| ++... ...-.+...|..|++.|+| ..|+. .|...
T Consensus 155 ~~-----~~l~v~DLG~Dri~~y~~~dg~L~~~~-~~~v~~G~GPRHi~FHpn~k~aY~v---------------~EL~s 213 (346)
T COG2706 155 DG-----RYLVVPDLGTDRIFLYDLDDGKLTPAD-PAEVKPGAGPRHIVFHPNGKYAYLV---------------NELNS 213 (346)
T ss_pred CC-----CEEEEeecCCceEEEEEcccCcccccc-ccccCCCCCcceEEEcCCCcEEEEE---------------eccCC
Confidence 98 246666653 34555543 55 32221 1111333457789999999 46665 45566
Q ss_pred CcEEEEEeCCCCeEEEEecC---------ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeecc--CCC-
Q 016199 214 NGRLLSFDPVTKETKVLVSD---------LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIET--LPG- 281 (393)
Q Consensus 214 ~g~l~~~d~~t~~~~~~~~~---------l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~--l~g- 281 (393)
+--++.||+..++++.+..- -.....|.+++||++||+++++.+.|..|.++.. .+. ..+... ..|
T Consensus 214 tV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~-~g~-L~~~~~~~teg~ 291 (346)
T COG2706 214 TVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD-GGK-LELVGITPTEGQ 291 (346)
T ss_pred EEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC-CCE-EEEEEEeccCCc
Confidence 67789999887888776432 2334568899999999999999999999998743 222 223222 223
Q ss_pred CCCeEEECCCCCEEEEEecCc
Q 016199 282 LPDNIRYDGEGHYLIALATEF 302 (393)
Q Consensus 282 ~P~~i~~d~~G~lwva~~~~r 302 (393)
.|+.+.+++.|++.++.+...
T Consensus 292 ~PR~F~i~~~g~~Liaa~q~s 312 (346)
T COG2706 292 FPRDFNINPSGRFLIAANQKS 312 (346)
T ss_pred CCccceeCCCCCEEEEEccCC
Confidence 599999999999999887553
No 19
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.13 E-value=1.8e-07 Score=87.61 Aligned_cols=225 Identities=14% Similarity=0.189 Sum_probs=129.1
Q ss_pred EE-EEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC-CceEEEeCCceEEEeeccCCc
Q 016199 97 IY-TGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY-KGLLKISGNSTVLLTDEAEGQ 174 (393)
Q Consensus 97 L~-~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~-~gl~~id~~g~~~l~~~~~g~ 174 (393)
+| ++..++.|..|+.+++. ....+ .....+.+++++++| +.+|++... +.|..+|.++.+.+.....+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~---~~~~~-~~~~~~~~l~~~~dg-----~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~- 72 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLE---VTRTF-PVGQRPRGITLSKDG-----KLLYVCASDSDTIQVIDLATGEVIGTLPSG- 72 (300)
T ss_pred EEEEecCCCEEEEEECCCCc---eEEEE-ECCCCCCceEECCCC-----CEEEEEECCCCeEEEEECCCCcEEEeccCC-
Confidence 44 44568889999987654 13333 334568899999998 146676544 44777887541111111111
Q ss_pred cccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEe
Q 016199 175 KFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCE 253 (393)
Q Consensus 175 ~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~ 253 (393)
..+..++++++|+ +|++. ...+.|..||..+++..........++++++++||+.++++.
T Consensus 73 --~~~~~~~~~~~g~~l~~~~-----------------~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~ 133 (300)
T TIGR03866 73 --PDPELFALHPNGKILYIAN-----------------EDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTS 133 (300)
T ss_pred --CCccEEEECCCCCEEEEEc-----------------CCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEe
Confidence 1244678899985 66663 224579999987765433222234578999999998887776
Q ss_pred CCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEE-EEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCC
Q 016199 254 TSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYL-IALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMG 332 (393)
Q Consensus 254 ~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lw-va~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 332 (393)
.....+..|+..+. ...... .....|..++++++|+++ ++....
T Consensus 134 ~~~~~~~~~d~~~~---~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~------------------------------- 178 (300)
T TIGR03866 134 ETTNMAHFIDTKTY---EIVDNV-LVDQRPRFAEFTADGKELWVSSEIG------------------------------- 178 (300)
T ss_pred cCCCeEEEEeCCCC---eEEEEE-EcCCCccEEEECCCCCEEEEEcCCC-------------------------------
Confidence 55455666675422 211111 122357788999999855 443212
Q ss_pred CCCceEEEECCC-CcEEEEeeC--CC-----CCccEE-EEEeCCEEEEEecCCCeEEEEeCCCCC
Q 016199 333 KSSSGVFIVDLD-GKPIAHYYD--PE-----MSLISS-AIKIGDHLYCGSVHHRGILHLDVNQHP 388 (393)
Q Consensus 333 ~~~~~v~~~d~~-g~~~~~~~d--~~-----~~~~~~-~~~~~g~Lyigs~~~~~i~~~~~~~~~ 388 (393)
+.|..+|.+ ++.+..+.. +. ...... +.+++..+|++....+.+..+|++...
T Consensus 179 ---~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~ 240 (300)
T TIGR03866 179 ---GTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE 240 (300)
T ss_pred ---CEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 346666653 444444321 11 111112 233455677776666778888876544
No 20
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=99.10 E-value=4.1e-09 Score=99.68 Aligned_cols=170 Identities=22% Similarity=0.386 Sum_probs=116.9
Q ss_pred ceEEecCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC
Q 016199 74 SEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY 153 (393)
Q Consensus 74 ~~~l~~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~ 153 (393)
...+......+||.+.+|+.+.--|++..+|++..|...... +..+.... +... .-..++.
T Consensus 45 ~~l~~~~~~~g~E~~~fd~~~~gp~~~v~dg~il~~~g~~~G----wv~~~~~~--------~s~~------~~~~~~~- 105 (376)
T KOG1520|consen 45 GKLIPNNHLTGPESLLFDPQGGGPYTGVVDGRILKYTGNDDG----WVKFADTK--------DSTN------RSQCCDP- 105 (376)
T ss_pred cccccccccCChhhheecccCCCceEEEECCceEEEeccCce----EEEEEecc--------cccc------ccccCCC-
Confidence 344445557999999999988768999999999988765322 33332211 0010 1111110
Q ss_pred CceEEEeCCceEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec
Q 016199 154 KGLLKISGNSTVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS 232 (393)
Q Consensus 154 ~gl~~id~~g~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~ 232 (393)
+ ..-.....|+|+ ||+++..| ++||+|+.. +|+..++.++..+.+.+
T Consensus 106 ---------~-~~~~e~~CGRPL----Gl~f~~~ggdL~VaDAYl------------------GL~~V~p~g~~a~~l~~ 153 (376)
T KOG1520|consen 106 ---------G-SFETEPLCGRPL----GIRFDKKGGDLYVADAYL------------------GLLKVGPEGGLAELLAD 153 (376)
T ss_pred ---------c-ceecccccCCcc----eEEeccCCCeEEEEecce------------------eeEEECCCCCcceeccc
Confidence 1 011113446665 89999987 999998643 79999999888666544
Q ss_pred C-----ccCCCcEEEcCCCCEEEEEeCC-----------------CCeEEEEEecCCCCcceeeeeccCCCCCCeEEECC
Q 016199 233 D-----LYFANGVVLSPDQTHLVYCETS-----------------MRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDG 290 (393)
Q Consensus 233 ~-----l~~~ngi~~s~dg~~l~v~~~~-----------------~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~ 290 (393)
. ..+.|++.++++| .+||++++ ++|+++||.. +...+++++++- +|+|++.++
T Consensus 154 ~~~G~~~kf~N~ldI~~~g-~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~---tK~~~VLld~L~-F~NGlaLS~ 228 (376)
T KOG1520|consen 154 EAEGKPFKFLNDLDIDPEG-VVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPS---TKVTKVLLDGLY-FPNGLALSP 228 (376)
T ss_pred cccCeeeeecCceeEcCCC-eEEEeccccccchhheEEeeecCCCccceEEecCc---ccchhhhhhccc-ccccccCCC
Confidence 3 5689999999955 79999976 5899999974 345667787776 899999999
Q ss_pred CCCEEEEEe
Q 016199 291 EGHYLIALA 299 (393)
Q Consensus 291 ~G~lwva~~ 299 (393)
|+.+.+-+-
T Consensus 229 d~sfvl~~E 237 (376)
T KOG1520|consen 229 DGSFVLVAE 237 (376)
T ss_pred CCCEEEEEe
Confidence 999765544
No 21
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.06 E-value=3e-07 Score=88.38 Aligned_cols=260 Identities=13% Similarity=0.075 Sum_probs=145.7
Q ss_pred CEEEEEecC-----CeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeC---------C-CceEEE
Q 016199 95 KLIYTGCED-----GWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADA---------Y-KGLLKI 159 (393)
Q Consensus 95 ~~L~~~~~~-----g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~---------~-~gl~~i 159 (393)
+.+|+.+.. ++|+.+|.++.+ +......+.+|+++ +.+|| +.||+|.. . .-|..+
T Consensus 13 ~~v~V~d~~~~~~~~~v~ViD~~~~~----v~g~i~~G~~P~~~-~spDg-----~~lyva~~~~~R~~~G~~~d~V~v~ 82 (352)
T TIGR02658 13 RRVYVLDPGHFAATTQVYTIDGEAGR----VLGMTDGGFLPNPV-VASDG-----SFFAHASTVYSRIARGKRTDYVEVI 82 (352)
T ss_pred CEEEEECCcccccCceEEEEECCCCE----EEEEEEccCCCcee-ECCCC-----CEEEEEeccccccccCCCCCEEEEE
Confidence 457766553 789999988766 55555678899997 99988 37999987 2 237778
Q ss_pred eCCceEEEee-ccCCc----cccccccEEEcCCC-cEEEEeCCCccc-------h---------hh--heehhcccC---
Q 016199 160 SGNSTVLLTD-EAEGQ----KFKLTDGVDVADDG-MIYFTDASNKYY-------L---------RE--YILDIFEGK--- 212 (393)
Q Consensus 160 d~~g~~~l~~-~~~g~----~~~~~~~l~~d~dG-~l~~td~~~~~~-------~---------~~--~~~~~~e~~--- 212 (393)
|....+.... ..... ....++.+++++|| .+|+.+..-... - ++ .++...|..
T Consensus 83 D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~ 162 (352)
T TIGR02658 83 DPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFM 162 (352)
T ss_pred ECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEE
Confidence 8766222211 11111 12446688999999 688887541110 0 00 011111100
Q ss_pred --CCcEEEE--EeCCCCeEEE----EecC---ccCCCcEEEcC-CCCEEEEEeCCCCeEEEEEecCCCCcceeee---ec
Q 016199 213 --PNGRLLS--FDPVTKETKV----LVSD---LYFANGVVLSP-DQTHLVYCETSMRRCRKFYIKGKNAGRVEKF---IE 277 (393)
Q Consensus 213 --~~g~l~~--~d~~t~~~~~----~~~~---l~~~ngi~~s~-dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~---~~ 277 (393)
..|+... ++.+ ++... +.+. .-+.+. .+++ ||+.+|++.. +.|+..++.+......+.+ ..
T Consensus 163 ~~~Dg~~~~v~~d~~-g~~~~~~~~vf~~~~~~v~~rP-~~~~~dg~~~~vs~e--G~V~~id~~~~~~~~~~~~~~~~~ 238 (352)
T TIGR02658 163 HCRDGSLAKVGYGTK-GNPKIKPTEVFHPEDEYLINHP-AYSNKSGRLVWPTYT--GKIFQIDLSSGDAKFLPAIEAFTE 238 (352)
T ss_pred EeecCceEEEEecCC-CceEEeeeeeecCCccccccCC-ceEcCCCcEEEEecC--CeEEEEecCCCcceecceeeeccc
Confidence 1111111 1111 11111 1000 111222 3345 8888888765 9999999866532222222 11
Q ss_pred cCC--C-CCCe---EEECCCCC-EEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEE
Q 016199 278 TLP--G-LPDN---IRYDGEGH-YLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIA 349 (393)
Q Consensus 278 ~l~--g-~P~~---i~~d~~G~-lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~ 349 (393)
... + .|.| ++++++|+ +||++..... +-+..+.+.|..+|. .++++.
T Consensus 239 ~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~-------------------------~thk~~~~~V~ViD~~t~kvi~ 293 (352)
T TIGR02658 239 AEKADGWRPGGWQQVAYHRARDRIYLLADQRAK-------------------------WTHKTASRFLFVVDAKTGKRLR 293 (352)
T ss_pred cccccccCCCcceeEEEcCCCCEEEEEecCCcc-------------------------ccccCCCCEEEEEECCCCeEEE
Confidence 111 1 3555 99998865 8887753310 001112246999997 467777
Q ss_pred EeeCCCCCccEEEEEeCC-EEEEEecCCCeEEEEeCCCCCCCCCC
Q 016199 350 HYYDPEMSLISSAIKIGD-HLYCGSVHHRGILHLDVNQHPARAII 393 (393)
Q Consensus 350 ~~~d~~~~~~~~~~~~~g-~Lyigs~~~~~i~~~~~~~~~~~~~~ 393 (393)
.+..+....--.+..++. .||..+..++.|..+|......+++|
T Consensus 294 ~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 294 KIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 777655222223455667 89999888889999999887776553
No 22
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=99.01 E-value=2.3e-08 Score=96.44 Aligned_cols=159 Identities=16% Similarity=0.246 Sum_probs=85.2
Q ss_pred CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeee----cCCCceeeeEECCC----CCCCCceEEEEEeCCC
Q 016199 83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWI----NTGGRPLGIAFANS----DPDADRITMIVADAYK 154 (393)
Q Consensus 83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~----~~~~~p~gl~~d~~----G~~~~~~~L~v~~~~~ 154 (393)
..|.+|++.|||+ +|++...|+|++++.++.. ...+.... ......++++++++ + .||++....
T Consensus 2 ~~P~~~a~~pdG~-l~v~e~~G~i~~~~~~g~~-~~~v~~~~~v~~~~~~gllgia~~p~f~~n~------~lYv~~t~~ 73 (331)
T PF07995_consen 2 NNPRSMAFLPDGR-LLVAERSGRIWVVDKDGSL-KTPVADLPEVFADGERGLLGIAFHPDFASNG------YLYVYYTNA 73 (331)
T ss_dssp SSEEEEEEETTSC-EEEEETTTEEEEEETTTEE-CEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-------EEEEEEEEE
T ss_pred CCceEEEEeCCCc-EEEEeCCceEEEEeCCCcC-cceecccccccccccCCcccceeccccCCCC------EEEEEEEcc
Confidence 5689999999986 8899999999999944432 11111111 11245799999984 7 899986532
Q ss_pred ---------ceEEEeC--Cc-----eEEEeeccCC--ccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcE
Q 016199 155 ---------GLLKISG--NS-----TVLLTDEAEG--QKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGR 216 (393)
Q Consensus 155 ---------gl~~id~--~g-----~~~l~~~~~g--~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~ 216 (393)
.|.++.. .. .+.+...... ........|++++||.||++...... .+...+. ....|.
T Consensus 74 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~--~~~~~~~--~~~~G~ 149 (331)
T PF07995_consen 74 DEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN--DDNAQDP--NSLRGK 149 (331)
T ss_dssp -TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT--GGGGCST--TSSTTE
T ss_pred cCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC--ccccccc--ccccce
Confidence 3666532 21 2223221111 12233457999999999998654322 0111111 123466
Q ss_pred EEEEeCCCC-------------eEEEEecCccCCCcEEEcCCCCEEEEEe
Q 016199 217 LLSFDPVTK-------------ETKVLVSDLYFANGVVLSPDQTHLVYCE 253 (393)
Q Consensus 217 l~~~d~~t~-------------~~~~~~~~l~~~ngi~~s~dg~~l~v~~ 253 (393)
|+|+++++. ..+.++.++..|.++++++....||++|
T Consensus 150 ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d 199 (331)
T PF07995_consen 150 ILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAAD 199 (331)
T ss_dssp EEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEE
T ss_pred EEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEc
Confidence 777776543 2234455555555555555522455555
No 23
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.98 E-value=2.4e-07 Score=91.17 Aligned_cols=186 Identities=17% Similarity=0.194 Sum_probs=132.2
Q ss_pred CCCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC---CceEE
Q 016199 83 KGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY---KGLLK 158 (393)
Q Consensus 83 ~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~---~gl~~ 158 (393)
..|.++++.+.++.+|+.+. ++.|..++..... .......+..|.+++++++| +.+||++.. .-+..
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~----~~~~~~vG~~P~~~~~~~~~-----~~vYV~n~~~~~~~vsv 144 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNT----VLGSIPVGLGPVGLAVDPDG-----KYVYVANAGNGNNTVSV 144 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccc----eeeEeeeccCCceEEECCCC-----CEEEEEecccCCceEEE
Confidence 67889999999998998876 4688888866544 44444555689999999988 489999884 34778
Q ss_pred EeCCceEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE-----Eec
Q 016199 159 ISGNSTVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV-----LVS 232 (393)
Q Consensus 159 id~~g~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~-----~~~ 232 (393)
+|.++..+......|. .+.+++++++|. +|+++ ...++|..+|..+..... ...
T Consensus 145 id~~t~~~~~~~~vG~---~P~~~a~~p~g~~vyv~~-----------------~~~~~v~vi~~~~~~v~~~~~~~~~~ 204 (381)
T COG3391 145 IDAATNKVTATIPVGN---TPTGVAVDPDGNKVYVTN-----------------SDDNTVSVIDTSGNSVVRGSVGSLVG 204 (381)
T ss_pred EeCCCCeEEEEEecCC---CcceEEECCCCCeEEEEe-----------------cCCCeEEEEeCCCcceeccccccccc
Confidence 8877622222222221 246999999995 99997 345789999987665553 123
Q ss_pred CccCCCcEEEcCCCCEEEEEeCCC--CeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199 233 DLYFANGVVLSPDQTHLVYCETSM--RRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA 299 (393)
Q Consensus 233 ~l~~~ngi~~s~dg~~l~v~~~~~--~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~ 299 (393)
....|.++.+++||..+|+.+..+ +++.+++...........-. ... .|.++.++++|.++....
T Consensus 205 ~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~-~~~-~~~~v~~~p~g~~~yv~~ 271 (381)
T COG3391 205 VGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV-GSG-APRGVAVDPAGKAAYVAN 271 (381)
T ss_pred cCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccc-ccC-CCCceeECCCCCEEEEEe
Confidence 356799999999999999999887 69999987543211111111 222 588999999999665553
No 24
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.98 E-value=7.8e-07 Score=87.50 Aligned_cols=245 Identities=16% Similarity=0.203 Sum_probs=158.1
Q ss_pred CCceEEEecCCCEEEEEecCC-eEEEEEcCCCCCcceeeeeecCC-CceeeeEECCCCCCCCceEEEEEeCC-CceEEEe
Q 016199 84 GPEDLLYDAHSKLIYTGCEDG-WIKRVTLNDSPADSLVHNWINTG-GRPLGIAFANSDPDADRITMIVADAY-KGLLKIS 160 (393)
Q Consensus 84 ~Pe~ia~d~~g~~L~~~~~~g-~I~~~~~~~~~~~~~~~~~~~~~-~~p~gl~~d~~G~~~~~~~L~v~~~~-~gl~~id 160 (393)
+|-.+++.+++..+|+..... .+..++..... ++.....+ ..|.++++.+.| .++|+.+.. ..+..+|
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~----~~~~~~~g~~~p~~i~v~~~~-----~~vyv~~~~~~~v~vid 102 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNT----VTQSLSVGGVYPAGVAVNPAG-----NKVYVTTGDSNTVSVID 102 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccce----eeeeccCCCccccceeeCCCC-----CeEEEecCCCCeEEEEc
Confidence 788899999997788776433 45555444222 33333333 678999999888 259999764 5688888
Q ss_pred CCceEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCc
Q 016199 161 GNSTVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANG 239 (393)
Q Consensus 161 ~~g~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ng 239 (393)
.+..+.+....-| ..+.+++++++| .+|+++... .++.+..+|..+++..........|.+
T Consensus 103 ~~~~~~~~~~~vG---~~P~~~~~~~~~~~vYV~n~~~---------------~~~~vsvid~~t~~~~~~~~vG~~P~~ 164 (381)
T COG3391 103 TATNTVLGSIPVG---LGPVGLAVDPDGKYVYVANAGN---------------GNNTVSVIDAATNKVTATIPVGNTPTG 164 (381)
T ss_pred CcccceeeEeeec---cCCceEEECCCCCEEEEEeccc---------------CCceEEEEeCCCCeEEEEEecCCCcce
Confidence 5442222211112 257899999988 899998421 356899999998876655333346799
Q ss_pred EEEcCCCCEEEEEeCCCCeEEEEEecCCCCcc-e-eeeeccCCCCCCeEEECCCCC-EEEEEecCcchhhhhhhcCcchh
Q 016199 240 VVLSPDQTHLVYCETSMRRCRKFYIKGKNAGR-V-EKFIETLPGLPDNIRYDGEGH-YLIALATEFSTYWDLAYRYPFIR 316 (393)
Q Consensus 240 i~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~-~-~~~~~~l~g~P~~i~~d~~G~-lwva~~~~r~~~~~~~~~~~~~r 316 (393)
++++++|..+|+++...++|..++.++....+ . .... .....|.+++++++|. +|++.....
T Consensus 165 ~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~-~~~~~P~~i~v~~~g~~~yV~~~~~~-------------- 229 (381)
T COG3391 165 VAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLV-GVGTGPAGIAVDPDGNRVYVANDGSG-------------- 229 (381)
T ss_pred EEECCCCCeEEEEecCCCeEEEEeCCCcceecccccccc-ccCCCCceEEECCCCCEEEEEeccCC--------------
Confidence 99999999999999999999999976543211 0 0011 2234689999999999 777665431
Q ss_pred hhhhhhhhhhCCCCCCCCCceEEEECCCC-cEEEE-eeCCC-CCccEEEEEeCCEEEEEecCCCeEEEEeCCCCC
Q 016199 317 KVSGMVVRYLGMPPMGKSSSGVFIVDLDG-KPIAH-YYDPE-MSLISSAIKIGDHLYCGSVHHRGILHLDVNQHP 388 (393)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~v~~~d~~g-~~~~~-~~d~~-~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~~~ 388 (393)
.+.+.++|... .++.. +.-.. ........+++..+|+.....+.+..+|.....
T Consensus 230 ------------------~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 230 ------------------SNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred ------------------CceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence 13577777643 34333 12111 122233445567788877667777777765543
No 25
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=98.98 E-value=2e-07 Score=87.83 Aligned_cols=188 Identities=16% Similarity=0.161 Sum_probs=117.9
Q ss_pred eeeeEECCCCCCCCceEEEEEeCCC-------------ceEEEeCCc---eEEEe-eccCCccccccccEEEcCC-----
Q 016199 130 PLGIAFANSDPDADRITMIVADAYK-------------GLLKISGNS---TVLLT-DEAEGQKFKLTDGVDVADD----- 187 (393)
Q Consensus 130 p~gl~~d~~G~~~~~~~L~v~~~~~-------------gl~~id~~g---~~~l~-~~~~g~~~~~~~~l~~d~d----- 187 (393)
..++..|+.| +|||-|.+. .|+.+|... .+.+. ....-.+..+.+++++|..
T Consensus 3 V~~v~iD~~~------rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~ 76 (287)
T PF03022_consen 3 VQRVQIDECG------RLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCD 76 (287)
T ss_dssp EEEEEE-TTS------EEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-
T ss_pred ccEEEEcCCC------CEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCc
Confidence 5678999999 999999752 388888765 22221 1111112356789999862
Q ss_pred -CcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCcc--------------------CCCcEEEcC--
Q 016199 188 -GMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLY--------------------FANGVVLSP-- 244 (393)
Q Consensus 188 -G~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~--------------------~~ngi~~s~-- 244 (393)
+.+|++|++ .++|..||..+++...+..+.. ...|+++++
T Consensus 77 ~~~aYItD~~-----------------~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~ 139 (287)
T PF03022_consen 77 DGFAYITDSG-----------------GPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPIS 139 (287)
T ss_dssp SEEEEEEETT-----------------TCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTS
T ss_pred ceEEEEeCCC-----------------cCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCC
Confidence 579999943 3579999998887766644311 134677765
Q ss_pred -CCCEEEEEeCCCCeEEEEEec---CCCCc-------ceeeeeccCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCc
Q 016199 245 -DQTHLVYCETSMRRCRKFYIK---GKNAG-------RVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYP 313 (393)
Q Consensus 245 -dg~~l~v~~~~~~ri~~~~~~---g~~~~-------~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~ 313 (393)
||+.||+.--...++++...+ .+... ..+.+- ..++..+|++.|++|++|++....
T Consensus 140 ~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG-~k~~~s~g~~~D~~G~ly~~~~~~------------ 206 (287)
T PF03022_consen 140 PDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLG-DKGSQSDGMAIDPNGNLYFTDVEQ------------ 206 (287)
T ss_dssp TTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEE-E---SECEEEEETTTEEEEEECCC------------
T ss_pred CCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceecc-ccCCCCceEEECCCCcEEEecCCC------------
Confidence 889999999888889998753 11111 112221 222356899999999999998854
Q ss_pred chhhhhhhhhhhhCCCCCCCCCceEEEECCCC-----cEEEEeeCCC-CCccEEEEEe---CCEEEEEecC
Q 016199 314 FIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDG-----KPIAHYYDPE-MSLISSAIKI---GDHLYCGSVH 375 (393)
Q Consensus 314 ~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g-----~~~~~~~d~~-~~~~~~~~~~---~g~Lyigs~~ 375 (393)
+.|.+.++++ +.....+|+. ......+..+ +|+||+-+..
T Consensus 207 ----------------------~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 207 ----------------------NAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNR 255 (287)
T ss_dssp ----------------------TEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred ----------------------CeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEECc
Confidence 5799999988 4444556776 5555555444 5999998643
No 26
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.97 E-value=5.1e-08 Score=92.37 Aligned_cols=149 Identities=22% Similarity=0.278 Sum_probs=101.7
Q ss_pred ccCCCceEEEecCCCEEEEEecC------------CeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEE
Q 016199 81 VLKGPEDLLYDAHSKLIYTGCED------------GWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMI 148 (393)
Q Consensus 81 ~~~~Pe~ia~d~~g~~L~~~~~~------------g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~ 148 (393)
....|.+..++++|+ +|+++.. |.|||+++.+.. .+.+......|+||++++|| +.+|
T Consensus 109 ~~~r~ND~~v~pdG~-~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~----~~l~~~~~~~~NGla~SpDg-----~tly 178 (307)
T COG3386 109 PLNRPNDGVVDPDGR-IWFGDMGYFDLGKSEERPTGSLYRVDPDGGV----VRLLDDDLTIPNGLAFSPDG-----KTLY 178 (307)
T ss_pred CcCCCCceeEcCCCC-EEEeCCCccccCccccCCcceEEEEcCCCCE----EEeecCcEEecCceEECCCC-----CEEE
Confidence 447788999999997 9988766 469999986543 33333324579999999999 3799
Q ss_pred EEeCC-CceEEEeCC---c----eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEE
Q 016199 149 VADAY-KGLLKISGN---S----TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSF 220 (393)
Q Consensus 149 v~~~~-~gl~~id~~---g----~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~ 220 (393)
++|+. ..|++++.+ + ...... ... .-..|+++++|.+|++|++.. ...++|.+|
T Consensus 179 ~aDT~~~~i~r~~~d~~~g~~~~~~~~~~-~~~-~~G~PDG~~vDadG~lw~~a~----------------~~g~~v~~~ 240 (307)
T COG3386 179 VADTPANRIHRYDLDPATGPIGGRRGFVD-FDE-EPGLPDGMAVDADGNLWVAAV----------------WGGGRVVRF 240 (307)
T ss_pred EEeCCCCeEEEEecCcccCccCCcceEEE-ccC-CCCCCCceEEeCCCCEEEecc----------------cCCceEEEE
Confidence 99986 457887644 3 111111 111 123588999999999997421 122489999
Q ss_pred eCCCCeEEEEecCccCCCcEEEc-CCCCEEEEEeCCCC
Q 016199 221 DPVTKETKVLVSDLYFANGVVLS-PDQTHLVYCETSMR 257 (393)
Q Consensus 221 d~~t~~~~~~~~~l~~~ngi~~s-~dg~~l~v~~~~~~ 257 (393)
+|+++.+..+.-....+...+|- ++.+.|||+....+
T Consensus 241 ~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~~ 278 (307)
T COG3386 241 NPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARSG 278 (307)
T ss_pred CCCCcEEEEEECCCCCCccceEeCCCcCEEEEEecCCC
Confidence 99966666555444556666654 66789999887653
No 27
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=98.90 E-value=1e-07 Score=93.27 Aligned_cols=182 Identities=10% Similarity=0.162 Sum_probs=110.9
Q ss_pred ccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCC-cEEEEEeCCC--C---eEEEEecCccCCCcEEEcCCCCEE
Q 016199 176 FKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPN-GRLLSFDPVT--K---ETKVLVSDLYFANGVVLSPDQTHL 249 (393)
Q Consensus 176 ~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~-g~l~~~d~~t--~---~~~~~~~~l~~~ngi~~s~dg~~l 249 (393)
+..|.+|++|++|+||+++... |.....+.... ++|++++... + +.+.+++++..|+|+++.++| +
T Consensus 13 ~~~P~~ia~d~~G~l~V~e~~~------y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--l 84 (367)
T TIGR02604 13 LRNPIAVCFDERGRLWVAEGIT------YSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--V 84 (367)
T ss_pred cCCCceeeECCCCCEEEEeCCc------CCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--E
Confidence 4567799999999999997421 11111111122 3898886532 2 356788899999999999888 8
Q ss_pred EEEeCCCCeEEEEE-ecCCC--CcceeeeeccCCC-------CCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhh
Q 016199 250 VYCETSMRRCRKFY-IKGKN--AGRVEKFIETLPG-------LPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVS 319 (393)
Q Consensus 250 ~v~~~~~~ri~~~~-~~g~~--~~~~~~~~~~l~g-------~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~ 319 (393)
||++. .+|++|. .+++. .++.+++++.++. .++++++++||+||++.....+.... .|..
T Consensus 85 yV~~~--~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~----~~~~---- 154 (367)
T TIGR02604 85 YVATP--PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVT----RPGT---- 154 (367)
T ss_pred EEeCC--CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceec----cCCC----
Confidence 89864 5799884 43331 2255666654432 27789999999999987643211000 0000
Q ss_pred hhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCCCCccEEEEEeCCEEEEEecCCCeEEEE
Q 016199 320 GMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHL 382 (393)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~~~ 382 (393)
+ ........+.+++++++|..++.+...-.+..-.....+|.||++........++
T Consensus 155 ---~----~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~~~~~~i 210 (367)
T TIGR02604 155 ---S----DESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDDPPLCRV 210 (367)
T ss_pred ---c----cCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEccCCCceeEE
Confidence 0 0000112367999999998888877653222223344568999886544444443
No 28
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=98.86 E-value=9.1e-08 Score=94.04 Aligned_cols=143 Identities=11% Similarity=0.089 Sum_probs=93.0
Q ss_pred eEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecC--CCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCce
Q 016199 87 DLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINT--GGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNST 164 (393)
Q Consensus 87 ~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~--~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g~ 164 (393)
.+++|.+|. ||+|+.+| +++|+..+++ .-..... ......+..|..| +|||+ ++.|++..++.|-
T Consensus 169 aLv~D~~g~-lWvgT~dG-L~~fd~~~gk----alql~s~~~dk~I~al~~d~qg------~LWVG-TdqGv~~~e~~G~ 235 (671)
T COG3292 169 ALVFDANGR-LWVGTPDG-LSYFDAGRGK----ALQLASPPLDKAINALIADVQG------RLWVG-TDQGVYLQEAEGW 235 (671)
T ss_pred eeeeeccCc-EEEecCCc-ceEEccccce----EEEcCCCcchhhHHHHHHHhcC------cEEEE-eccceEEEchhhc
Confidence 378898885 99999887 8999887655 3333221 1234677888899 99999 5799999998881
Q ss_pred EEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec----CccCCCcE
Q 016199 165 VLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS----DLYFANGV 240 (393)
Q Consensus 165 ~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~----~l~~~ngi 240 (393)
.+.......+...+.-+..|.+|.+||++ .+ ++.|+......+..... +....|++
T Consensus 236 -~~sn~~~~lp~~~I~ll~qD~qG~lWiGT------------------en-Gl~r~~l~rq~Lq~~~~~~~l~~S~vnsL 295 (671)
T COG3292 236 -RASNWGPMLPSGNILLLVQDAQGELWIGT------------------EN-GLWRTRLPRQGLQIPLSKMHLGVSTVNSL 295 (671)
T ss_pred -cccccCCCCcchheeeeecccCCCEEEee------------------cc-cceeEecCCCCccccccccCCccccccce
Confidence 11122223333445667788899999994 23 46766654444333222 23445778
Q ss_pred EEcCCCCEEEEEeCCCCeEEEEEec
Q 016199 241 VLSPDQTHLVYCETSMRRCRKFYIK 265 (393)
Q Consensus 241 ~~s~dg~~l~v~~~~~~ri~~~~~~ 265 (393)
..+.|| .+|+... +++.+|...
T Consensus 296 ~~D~dG-sLWv~t~--~giv~~~~a 317 (671)
T COG3292 296 WLDTDG-SLWVGTY--GGIVRYLTA 317 (671)
T ss_pred eeccCC-CEeeecc--CceEEEecc
Confidence 888888 5777543 567777643
No 29
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.85 E-value=6.5e-06 Score=75.02 Aligned_cols=179 Identities=15% Similarity=0.187 Sum_probs=116.0
Q ss_pred ceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeC-CCceEEEeCCc-
Q 016199 86 EDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADA-YKGLLKISGNS- 163 (393)
Q Consensus 86 e~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~-~~gl~~id~~g- 163 (393)
..+.+.++++.+++++.+|.|..|+.+.+. ....+......+..+.+.+++ +++++.. .+.+..++...
T Consensus 55 ~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~---~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~i~~~~~~~~ 125 (289)
T cd00200 55 RDVAASADGTYLASGSSDKTIRLWDLETGE---CVRTLTGHTSYVSSVAFSPDG------RILSSSSRDKTIKVWDVETG 125 (289)
T ss_pred eEEEECCCCCEEEEEcCCCeEEEEEcCccc---ceEEEeccCCcEEEEEEcCCC------CEEEEecCCCeEEEEECCCc
Confidence 368899988888898889999999987642 133443334467889999888 7777765 55577778653
Q ss_pred --eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE-EecCccCCCcE
Q 016199 164 --TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV-LVSDLYFANGV 240 (393)
Q Consensus 164 --~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~-~~~~l~~~ngi 240 (393)
...+. .. ...+..+.+++++.++++. ...+.+..||..+++... +.........+
T Consensus 126 ~~~~~~~----~~-~~~i~~~~~~~~~~~l~~~-----------------~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~ 183 (289)
T cd00200 126 KCLTTLR----GH-TDWVNSVAFSPDGTFVASS-----------------SQDGTIKLWDLRTGKCVATLTGHTGEVNSV 183 (289)
T ss_pred EEEEEec----cC-CCcEEEEEEcCcCCEEEEE-----------------cCCCcEEEEEccccccceeEecCccccceE
Confidence 22221 11 1235678899988776663 224678889887554332 33233357889
Q ss_pred EEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199 241 VLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA 299 (393)
Q Consensus 241 ~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~ 299 (393)
+++++++.++++.. .+.+..|++...+ ....+. ........+++++++.++++..
T Consensus 184 ~~~~~~~~l~~~~~-~~~i~i~d~~~~~--~~~~~~-~~~~~i~~~~~~~~~~~~~~~~ 238 (289)
T cd00200 184 AFSPDGEKLLSSSS-DGTIKLWDLSTGK--CLGTLR-GHENGVNSVAFSPDGYLLASGS 238 (289)
T ss_pred EECCCcCEEEEecC-CCcEEEEECCCCc--eecchh-hcCCceEEEEEcCCCcEEEEEc
Confidence 99999977777665 7889999985321 111121 1222356688888877777655
No 30
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.84 E-value=7.2e-06 Score=74.70 Aligned_cols=182 Identities=18% Similarity=0.238 Sum_probs=111.3
Q ss_pred CCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc
Q 016199 84 GPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS 163 (393)
Q Consensus 84 ~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g 163 (393)
...+++++++++.+++++.+|.|..|+.+++. ..............+.+.+++ +.++++...+.+..++.+.
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~---~~~~~~~~~~~i~~~~~~~~~-----~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGE---LLRTLKGHTGPVRDVAASADG-----TYLASGSSDKTIRLWDLET 82 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC---cEEEEecCCcceeEEEECCCC-----CEEEEEcCCCeEEEEEcCc
Confidence 34568899998888888889999999887653 122222222334588888887 1455554455577777654
Q ss_pred ---eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec-CccCCCc
Q 016199 164 ---TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS-DLYFANG 239 (393)
Q Consensus 164 ---~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~-~l~~~ng 239 (393)
...+. .. ...+..+.+.+++.++++. ...+.+..||..+++...... .......
T Consensus 83 ~~~~~~~~----~~-~~~i~~~~~~~~~~~~~~~-----------------~~~~~i~~~~~~~~~~~~~~~~~~~~i~~ 140 (289)
T cd00200 83 GECVRTLT----GH-TSYVSSVAFSPDGRILSSS-----------------SRDKTIKVWDVETGKCLTTLRGHTDWVNS 140 (289)
T ss_pred ccceEEEe----cc-CCcEEEEEEcCCCCEEEEe-----------------cCCCeEEEEECCCcEEEEEeccCCCcEEE
Confidence 22221 11 1235578888888777764 235679999987555443332 2334678
Q ss_pred EEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCC-EEEEEe
Q 016199 240 VVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGH-YLIALA 299 (393)
Q Consensus 240 i~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~-lwva~~ 299 (393)
++++++++.++ +....+.|..|++...+ ....+. ...+....+.++++|+ ++++..
T Consensus 141 ~~~~~~~~~l~-~~~~~~~i~i~d~~~~~--~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~ 197 (289)
T cd00200 141 VAFSPDGTFVA-SSSQDGTIKLWDLRTGK--CVATLT-GHTGEVNSVAFSPDGEKLLSSSS 197 (289)
T ss_pred EEEcCcCCEEE-EEcCCCcEEEEEccccc--cceeEe-cCccccceEEECCCcCEEEEecC
Confidence 89999876554 44457889999985322 112222 2222456788899885 444443
No 31
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.76 E-value=1.1e-06 Score=85.82 Aligned_cols=254 Identities=13% Similarity=0.107 Sum_probs=137.9
Q ss_pred CceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeC-CCceEEEeCCc
Q 016199 85 PEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADA-YKGLLKISGNS 163 (393)
Q Consensus 85 Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~-~~gl~~id~~g 163 (393)
+..+++++||+.+|+.+.+|.|..+|+.+.+ +......+..|.++++++|| +.+++++. ...+..+|.++
T Consensus 39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~----~v~~i~~G~~~~~i~~s~DG-----~~~~v~n~~~~~v~v~D~~t 109 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGK----VVATIKVGGNPRGIAVSPDG-----KYVYVANYEPGTVSVIDAET 109 (369)
T ss_dssp EEEEE-TT-SSEEEEEETTSEEEEEETTSSS----EEEEEE-SSEEEEEEE--TT-----TEEEEEEEETTEEEEEETTT
T ss_pred eeEEEecCCCCEEEEEcCCCeEEEEECCccc----EEEEEecCCCcceEEEcCCC-----CEEEEEecCCCceeEecccc
Confidence 4557889999999999999999999998876 44334567889999999999 25777765 45678889776
Q ss_pred eEEE---eec-cCC-ccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCe-E-EEEecCccC
Q 016199 164 TVLL---TDE-AEG-QKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKE-T-KVLVSDLYF 236 (393)
Q Consensus 164 ~~~l---~~~-~~g-~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~-~-~~~~~~l~~ 236 (393)
.+.+ ... ... .+...+.+|..++....|+.+. ...+.++..|....+ . .....--.+
T Consensus 110 le~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l----------------kd~~~I~vVdy~d~~~~~~~~i~~g~~ 173 (369)
T PF02239_consen 110 LEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL----------------KDTGEIWVVDYSDPKNLKVTTIKVGRF 173 (369)
T ss_dssp --EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE----------------TTTTEEEEEETTTSSCEEEEEEE--TT
T ss_pred ccceeecccccccccccCCCceeEEecCCCCEEEEEE----------------ccCCeEEEEEeccccccceeeeccccc
Confidence 3222 211 111 0112244666667766565431 335688888854332 2 122333467
Q ss_pred CCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeecc--CCC-CCCeEEECCC-CCEEEEEecCcchhhhhhhcC
Q 016199 237 ANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIET--LPG-LPDNIRYDGE-GHYLIALATEFSTYWDLAYRY 312 (393)
Q Consensus 237 ~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~--l~g-~P~~i~~d~~-G~lwva~~~~r~~~~~~~~~~ 312 (393)
+++..+++|+++++++....+.|..++.+.. .....++. .|. .|..-..++. |-+|......... ...+..
T Consensus 174 ~~D~~~dpdgry~~va~~~sn~i~viD~~~~---k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~-~~~ig~- 248 (369)
T PF02239_consen 174 PHDGGFDPDGRYFLVAANGSNKIAVIDTKTG---KLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFA-IPLIGT- 248 (369)
T ss_dssp EEEEEE-TTSSEEEEEEGGGTEEEEEETTTT---EEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSE-EEEEE--
T ss_pred ccccccCcccceeeecccccceeEEEeeccc---eEEEEeeccccccccccccccCCCcceEEeecccccee-cccccC-
Confidence 8999999999999998888889999997532 22222221 110 1111113444 4467655422100 000000
Q ss_pred cchhhhhhhhhhhhCCCCCCCCCceEEEEC-CCCcEEEEeeCCCCCccEEEEEeCCEEEEE---ecCCCeEEEEeCCCCC
Q 016199 313 PFIRKVSGMVVRYLGMPPMGKSSSGVFIVD-LDGKPIAHYYDPEMSLISSAIKIGDHLYCG---SVHHRGILHLDVNQHP 388 (393)
Q Consensus 313 ~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d-~~g~~~~~~~d~~~~~~~~~~~~~g~Lyig---s~~~~~i~~~~~~~~~ 388 (393)
.-+..++ .+-++++.+.........-..++..+||+. +-..+.|..+|.+...
T Consensus 249 -----------------------~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~ 305 (369)
T PF02239_consen 249 -----------------------DPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLK 305 (369)
T ss_dssp ------------------------TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTE
T ss_pred -----------------------CccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcc
Confidence 0011123 235677776654433333345666899999 5556899999987765
Q ss_pred CCC
Q 016199 389 ARA 391 (393)
Q Consensus 389 ~~~ 391 (393)
.++
T Consensus 306 ~~~ 308 (369)
T PF02239_consen 306 VVK 308 (369)
T ss_dssp EEE
T ss_pred eeE
Confidence 443
No 32
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.75 E-value=2.9e-06 Score=77.92 Aligned_cols=194 Identities=15% Similarity=0.185 Sum_probs=107.5
Q ss_pred cCccCCCceEEEecCCCEEEEEe-cCCeEEEEEcCCCCCcceeeeeecC-CCceeeeEECCCCCCCCceEEEEEeC-CCc
Q 016199 79 YGVLKGPEDLLYDAHSKLIYTGC-EDGWIKRVTLNDSPADSLVHNWINT-GGRPLGIAFANSDPDADRITMIVADA-YKG 155 (393)
Q Consensus 79 ~g~~~~Pe~ia~d~~g~~L~~~~-~~g~I~~~~~~~~~~~~~~~~~~~~-~~~p~gl~~d~~G~~~~~~~L~v~~~-~~g 155 (393)
.|....+.+|+++++.+.||+-+ ..+.|+.++.++.. ...+.-. .+.+.||+.-.+| .+.+.+- .+.
T Consensus 18 ~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~v----lr~i~l~g~~D~EgI~y~g~~------~~vl~~Er~~~ 87 (248)
T PF06977_consen 18 PGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKV----LRRIPLDGFGDYEGITYLGNG------RYVLSEERDQR 87 (248)
T ss_dssp TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--E----EEEEE-SS-SSEEEEEE-STT------EEEEEETTTTE
T ss_pred CCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCE----EEEEeCCCCCCceeEEEECCC------EEEEEEcCCCc
Confidence 44445578899999877888665 47789999987553 4444322 3579999999899 8888864 344
Q ss_pred eEEEeC--Cc--e-----EEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeC--C
Q 016199 156 LLKISG--NS--T-----VLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDP--V 223 (393)
Q Consensus 156 l~~id~--~g--~-----~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~--~ 223 (393)
|+.++. ++ . +.+.-...........+|+.|+.+ ++|++- |.. -.+|+.++. .
T Consensus 88 L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k---------------E~~-P~~l~~~~~~~~ 151 (248)
T PF06977_consen 88 LYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK---------------ERK-PKRLYEVNGFPG 151 (248)
T ss_dssp EEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE---------------ESS-SEEEEEEESTT-
T ss_pred EEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe---------------CCC-ChhhEEEccccC
Confidence 666643 22 1 111111111112235699999964 788773 222 346888775 2
Q ss_pred CCeEEEEec--------CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCC------CCCCeEEEC
Q 016199 224 TKETKVLVS--------DLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLP------GLPDNIRYD 289 (393)
Q Consensus 224 t~~~~~~~~--------~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~------g~P~~i~~d 289 (393)
......... ...-+.+++++|....+|+-.....+|..++.+|.-... ..+..... ..|.||++|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~-~~L~~g~~gl~~~~~QpEGIa~d 230 (248)
T PF06977_consen 152 GFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSS-LSLDRGFHGLSKDIPQPEGIAFD 230 (248)
T ss_dssp SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEE-EE-STTGGG-SS---SEEEEEE-
T ss_pred ccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEE-EEeCCcccCcccccCCccEEEEC
Confidence 222222111 134578999999988899998888999999976642111 11111110 258999999
Q ss_pred CCCCEEEEEe
Q 016199 290 GEGHYLIALA 299 (393)
Q Consensus 290 ~~G~lwva~~ 299 (393)
++|++||+.-
T Consensus 231 ~~G~LYIvsE 240 (248)
T PF06977_consen 231 PDGNLYIVSE 240 (248)
T ss_dssp TT--EEEEET
T ss_pred CCCCEEEEcC
Confidence 9999999864
No 33
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=98.74 E-value=2.2e-07 Score=91.39 Aligned_cols=194 Identities=13% Similarity=0.114 Sum_probs=103.4
Q ss_pred EEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeec--CCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeC--Cc
Q 016199 88 LLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWIN--TGGRPLGIAFANSDPDADRITMIVADAYKGLLKISG--NS 163 (393)
Q Consensus 88 ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~--~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~--~g 163 (393)
++.|-.|+ ||+|+..| +++.++.+.. +..+.. ..+...-+..|.+| .+||+ +.+|+.+... .+
T Consensus 211 l~~d~qg~-LWVGTdqG-v~~~e~~G~~----~sn~~~~lp~~~I~ll~qD~qG------~lWiG-TenGl~r~~l~rq~ 277 (671)
T COG3292 211 LIADVQGR-LWVGTDQG-VYLQEAEGWR----ASNWGPMLPSGNILLLVQDAQG------ELWIG-TENGLWRTRLPRQG 277 (671)
T ss_pred HHHHhcCc-EEEEeccc-eEEEchhhcc----ccccCCCCcchheeeeecccCC------CEEEe-ecccceeEecCCCC
Confidence 55666775 99999876 7877776632 222211 12455677788999 99999 4777776643 23
Q ss_pred eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccc--hhhhee------------------------hhcccCCCcEE
Q 016199 164 TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYY--LREYIL------------------------DIFEGKPNGRL 217 (393)
Q Consensus 164 ~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~--~~~~~~------------------------~~~e~~~~g~l 217 (393)
.... ..........++++..|.+|.+|+++...... ..+|+. .+......|-+
T Consensus 278 Lq~~-~~~~~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L 356 (671)
T COG3292 278 LQIP-LSKMHLGVSTVNSLWLDTDGSLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGEL 356 (671)
T ss_pred cccc-ccccCCccccccceeeccCCCEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccccceE
Confidence 2111 11122334557889999999999998654322 111111 00011112223
Q ss_pred EEEeCCCCeEEEEecCcc--CCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCC-CeEEECCCCCE
Q 016199 218 LSFDPVTKETKVLVSDLY--FANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLP-DNIRYDGEGHY 294 (393)
Q Consensus 218 ~~~d~~t~~~~~~~~~l~--~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P-~~i~~d~~G~l 294 (393)
...+..++..-....... ...-.+++.+| .+|+.. .+++|.+++.+.. +-...-..++|..+ ..|..|+++++
T Consensus 357 ~van~stG~~v~sv~q~Rg~nit~~~~d~~g-~lWlgs-~q~GLsrl~n~n~--~avlde~agl~ss~V~aived~dnsL 432 (671)
T COG3292 357 MVANGSTGELVRSVHQLRGMNITTTLEDSRG-RLWLGS-MQNGLSRLDNKNE--WAVLDEDAGLPSSEVSAIVEDPDNSL 432 (671)
T ss_pred EEecCCCCcEEEEeeeccccccchhhhccCC-cEEEEe-cccchhhhccCCc--ccccccccCCcccceeeeeecCCCCE
Confidence 333444443322111111 12233445555 466654 4668989886431 11111112333211 33667999999
Q ss_pred EEEEe
Q 016199 295 LIALA 299 (393)
Q Consensus 295 wva~~ 299 (393)
||++.
T Consensus 433 WIGTs 437 (671)
T COG3292 433 WIGTS 437 (671)
T ss_pred EEecc
Confidence 99998
No 34
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.73 E-value=2.5e-05 Score=78.28 Aligned_cols=159 Identities=13% Similarity=0.127 Sum_probs=92.7
Q ss_pred eEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC---CceEEEeCCc--eEEEeeccCCcccccc
Q 016199 105 WIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY---KGLLKISGNS--TVLLTDEAEGQKFKLT 179 (393)
Q Consensus 105 ~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~---~gl~~id~~g--~~~l~~~~~g~~~~~~ 179 (393)
.|+.++.++.. .+.+..........++.+|| +.|...... ..|+.++.++ .+.+. ...+ ..
T Consensus 183 ~l~~~d~dg~~----~~~lt~~~~~v~~p~wSpDG-----~~lay~s~~~g~~~i~~~dl~~g~~~~l~-~~~g----~~ 248 (435)
T PRK05137 183 RLAIMDQDGAN----VRYLTDGSSLVLTPRFSPNR-----QEITYMSYANGRPRVYLLDLETGQRELVG-NFPG----MT 248 (435)
T ss_pred EEEEECCCCCC----cEEEecCCCCeEeeEECCCC-----CEEEEEEecCCCCEEEEEECCCCcEEEee-cCCC----cc
Confidence 46666655443 33333323345677888998 244443222 3488888765 33332 2222 12
Q ss_pred ccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCC--C
Q 016199 180 DGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETS--M 256 (393)
Q Consensus 180 ~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~--~ 256 (393)
....++|||. |+++... .+...||.+|.++++.+.+..........+++|||+.++++... .
T Consensus 249 ~~~~~SPDG~~la~~~~~---------------~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~ 313 (435)
T PRK05137 249 FAPRFSPDGRKVVMSLSQ---------------GGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGS 313 (435)
T ss_pred cCcEECCCCCEEEEEEec---------------CCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCC
Confidence 3567899994 5555211 22356999999988877765544445568899999988776533 3
Q ss_pred CeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEE
Q 016199 257 RRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLI 296 (393)
Q Consensus 257 ~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwv 296 (393)
..|+++++++.. .+.+... .+.-.....+++|+..+
T Consensus 314 ~~Iy~~d~~g~~---~~~lt~~-~~~~~~~~~SpdG~~ia 349 (435)
T PRK05137 314 PQLYVMNADGSN---PRRISFG-GGRYSTPVWSPRGDLIA 349 (435)
T ss_pred CeEEEEECCCCC---eEEeecC-CCcccCeEECCCCCEEE
Confidence 478888876532 2222211 22233467888888544
No 35
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.68 E-value=1.5e-05 Score=80.20 Aligned_cols=174 Identities=10% Similarity=0.082 Sum_probs=104.0
Q ss_pred eEEEecCCCEEEEE-ecCC--eEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCc---eEEEe
Q 016199 87 DLLYDAHSKLIYTG-CEDG--WIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKG---LLKIS 160 (393)
Q Consensus 87 ~ia~d~~g~~L~~~-~~~g--~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g---l~~id 160 (393)
+..++|||+.|+.. ..++ .|+.++..++. .+.+....+.....++.+|| +.|+++....| |+.++
T Consensus 222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~----~~~lt~~~g~~~~~~wSPDG-----~~La~~~~~~g~~~Iy~~d 292 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV----REKVTSFPGINGAPRFSPDG-----KKLALVLSKDGQPEIYVVD 292 (448)
T ss_pred CceECCCCCEEEEEEecCCCcEEEEEECCCCC----eEEecCCCCCcCCeeECCCC-----CEEEEEEeCCCCeEEEEEE
Confidence 46899999866544 3333 69999988765 44443322333467889998 24655433333 88888
Q ss_pred CCc--eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCC
Q 016199 161 GNS--TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFA 237 (393)
Q Consensus 161 ~~g--~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ 237 (393)
.++ .+.+... . .......+++|| .|+++... .+...||++|.++++.+.+.......
T Consensus 293 l~tg~~~~lt~~-~----~~~~~p~wSpDG~~I~f~s~~---------------~g~~~Iy~~dl~~g~~~~Lt~~g~~~ 352 (448)
T PRK04792 293 IATKALTRITRH-R----AIDTEPSWHPDGKSLIFTSER---------------GGKPQIYRVNLASGKVSRLTFEGEQN 352 (448)
T ss_pred CCCCCeEECccC-C----CCccceEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEEecCCCCC
Confidence 765 3333221 1 122356788998 46665311 22347999999888877664333334
Q ss_pred CcEEEcCCCCEEEEEeCCCC--eEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCE
Q 016199 238 NGVVLSPDQTHLVYCETSMR--RCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHY 294 (393)
Q Consensus 238 ngi~~s~dg~~l~v~~~~~~--ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~l 294 (393)
.+.+++|||+.++++....+ +|+++++++. ....+... .......++++|+.
T Consensus 353 ~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g---~~~~lt~~--~~d~~ps~spdG~~ 406 (448)
T PRK04792 353 LGGSITPDGRSMIMVNRTNGKFNIARQDLETG---AMQVLTST--RLDESPSVAPNGTM 406 (448)
T ss_pred cCeeECCCCCEEEEEEecCCceEEEEEECCCC---CeEEccCC--CCCCCceECCCCCE
Confidence 45789999999988765443 6788887543 22222211 11223467888873
No 36
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.65 E-value=1.6e-05 Score=80.52 Aligned_cols=192 Identities=17% Similarity=0.205 Sum_probs=132.7
Q ss_pred cCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCc-eEEEe
Q 016199 82 LKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKG-LLKIS 160 (393)
Q Consensus 82 ~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g-l~~id 160 (393)
...-.+++++|||+++-+|..||+|..|+...+. .+.+|........++.|...| +..++..-.| +..+|
T Consensus 350 ~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf---C~vTFteHts~Vt~v~f~~~g------~~llssSLDGtVRAwD 420 (893)
T KOG0291|consen 350 SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF---CFVTFTEHTSGVTAVQFTARG------NVLLSSSLDGTVRAWD 420 (893)
T ss_pred ccceeeEEECCCCcEEEeccCCCcEEEEeccCce---EEEEeccCCCceEEEEEEecC------CEEEEeecCCeEEeee
Confidence 3445679999999989899999999999988654 355666666778999999999 7777766555 55567
Q ss_pred CCc---eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccC-
Q 016199 161 GNS---TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYF- 236 (393)
Q Consensus 161 ~~g---~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~- 236 (393)
... .+.+. ... + .....+++|+.|.+.++-+ ...-.|+.++.+||++--.+.+-..
T Consensus 421 lkRYrNfRTft-~P~--p-~QfscvavD~sGelV~AG~----------------~d~F~IfvWS~qTGqllDiLsGHEgP 480 (893)
T KOG0291|consen 421 LKRYRNFRTFT-SPE--P-IQFSCVAVDPSGELVCAGA----------------QDSFEIFVWSVQTGQLLDILSGHEGP 480 (893)
T ss_pred ecccceeeeec-CCC--c-eeeeEEEEcCCCCEEEeec----------------cceEEEEEEEeecCeeeehhcCCCCc
Confidence 543 22221 111 1 1234789999998877632 1233589999999987766665444
Q ss_pred CCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCC-EEEEEecCcchhh
Q 016199 237 ANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGH-YLIALATEFSTYW 306 (393)
Q Consensus 237 ~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~-lwva~~~~r~~~~ 306 (393)
..++++++++. ++++.++..+|.+|++-.. .++.|.+. ...-.-++++.|+|. +-|++..+.-.++
T Consensus 481 Vs~l~f~~~~~-~LaS~SWDkTVRiW~if~s-~~~vEtl~--i~sdvl~vsfrPdG~elaVaTldgqItf~ 547 (893)
T KOG0291|consen 481 VSGLSFSPDGS-LLASGSWDKTVRIWDIFSS-SGTVETLE--IRSDVLAVSFRPDGKELAVATLDGQITFF 547 (893)
T ss_pred ceeeEEccccC-eEEeccccceEEEEEeecc-CceeeeEe--eccceeEEEEcCCCCeEEEEEecceEEEE
Confidence 47899999996 7788999999999998542 34555543 222234577888887 7788776543333
No 37
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=98.62 E-value=1.1e-05 Score=85.64 Aligned_cols=223 Identities=17% Similarity=0.214 Sum_probs=133.2
Q ss_pred ceEEEecCCCEEEEEec-CCeEEEEEcCCCCC-cceeeeee----------cCCC-----------ceeeeEECCCCCCC
Q 016199 86 EDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPA-DSLVHNWI----------NTGG-----------RPLGIAFANSDPDA 142 (393)
Q Consensus 86 e~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~-~~~~~~~~----------~~~~-----------~p~gl~~d~~G~~~ 142 (393)
..||++|=...||++.. ..+|+|+.--..+. ..-.+.+. ..|+ .|.||++|++|
T Consensus 410 Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g--- 486 (1899)
T KOG4659|consen 410 YYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMG--- 486 (1899)
T ss_pred eEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccCC---
Confidence 44899995456999876 55788874311110 00022221 1122 38999999999
Q ss_pred CceEEEEEeCCCceEEEeCCc-eEEEe-ec--------------cCCccccccccEEEcC-CCcEEEEeCCCccchhhhe
Q 016199 143 DRITMIVADAYKGLLKISGNS-TVLLT-DE--------------AEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYI 205 (393)
Q Consensus 143 ~~~~L~v~~~~~gl~~id~~g-~~~l~-~~--------------~~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~ 205 (393)
.||++| ...|..+|.+| ...+. .. .....+.+|.+++++| |+.+|+-|
T Consensus 487 ---~lYfaD-~t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld----------- 551 (1899)
T KOG4659|consen 487 ---NLYFAD-GTRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLD----------- 551 (1899)
T ss_pred ---cEEEec-ccEEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEee-----------
Confidence 999997 45688889888 43332 11 1123467899999999 78999986
Q ss_pred ehhcccCCCcEEEEEeCCCCeEEEEec---------------------CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEe
Q 016199 206 LDIFEGKPNGRLLSFDPVTKETKVLVS---------------------DLYFANGVVLSPDQTHLVYCETSMRRCRKFYI 264 (393)
Q Consensus 206 ~~~~e~~~~g~l~~~d~~t~~~~~~~~---------------------~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~ 264 (393)
+.-|+++++. ++++..+. .+..+..|+++++| .|||+|+...||.|...
T Consensus 552 --------~nvvlrit~~-~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G-~lyvaEsD~rriNrvr~ 621 (1899)
T KOG4659|consen 552 --------TNVVLRITVV-HRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDG-ALYVAESDGRRINRVRK 621 (1899)
T ss_pred --------cceEEEEccC-ccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCc-eEEEEeccchhhhheEE
Confidence 3457777765 34433211 13456789999999 79999998877766543
Q ss_pred cCCCCcceeeeecc-------------------------CCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhh
Q 016199 265 KGKNAGRVEKFIET-------------------------LPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVS 319 (393)
Q Consensus 265 ~g~~~~~~~~~~~~-------------------------l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~ 319 (393)
-+. .++.-.++.. .-.-|..+|+.+||.++||..+. -.+|++.
T Consensus 622 ~~t-dg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN-----------~rIr~Vs 689 (1899)
T KOG4659|consen 622 LST-DGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGN-----------SRIRKVS 689 (1899)
T ss_pred ecc-CceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCc-----------hhhhhhh
Confidence 211 1111111100 00136779999999999997644 2345665
Q ss_pred hhhhhhhCCCCC---CCCCceEEEECCCCcEE
Q 016199 320 GMVVRYLGMPPM---GKSSSGVFIVDLDGKPI 348 (393)
Q Consensus 320 ~~~~~~~~~~~~---~~~~~~v~~~d~~g~~~ 348 (393)
++.|.+-...-+ .....-++.||..|+-.
T Consensus 690 ~~~~~~~~sr~YEi~~p~~QE~Y~Fnr~GqH~ 721 (1899)
T KOG4659|consen 690 ARMAKYDGSRTYEITDPERQEKYTFNRHGQHS 721 (1899)
T ss_pred hcccccCCCceeeccCcccceeEEEeccceee
Confidence 555544321111 11223467777776544
No 38
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.61 E-value=5.2e-05 Score=74.08 Aligned_cols=191 Identities=19% Similarity=0.196 Sum_probs=125.0
Q ss_pred eEEecCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeee--cCCCceeeeEECCCCCCCCceEEEEEeC
Q 016199 75 EKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWI--NTGGRPLGIAFANSDPDADRITMIVADA 152 (393)
Q Consensus 75 ~~l~~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~--~~~~~p~gl~~d~~G~~~~~~~L~v~~~ 152 (393)
..+..|..+.-.++++.++++.||.++++|.|..|+...+.. ..+. .......+|+.+..| .++.+.+
T Consensus 313 ~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~----~~~~g~~h~nqI~~~~~~~~~------~~~t~g~ 382 (603)
T KOG0318|consen 313 LKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTS----DRLAGKGHTNQIKGMAASESG------ELFTIGW 382 (603)
T ss_pred hheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccc----cccccccccceEEEEeecCCC------cEEEEec
Confidence 344466667788899999999999999999999999876652 2221 123456788888878 8888878
Q ss_pred CCceEEEeCCc---eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEE
Q 016199 153 YKGLLKISGNS---TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETK 228 (393)
Q Consensus 153 ~~gl~~id~~g---~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~ 228 (393)
+.-|.+++..+ ...-...... .|-++++.++| .+.++. ...|..+.-.++ ..
T Consensus 383 Dd~l~~~~~~~~~~t~~~~~~lg~----QP~~lav~~d~~~avv~~-------------------~~~iv~l~~~~~-~~ 438 (603)
T KOG0318|consen 383 DDTLRVISLKDNGYTKSEVVKLGS----QPKGLAVLSDGGTAVVAC-------------------ISDIVLLQDQTK-VS 438 (603)
T ss_pred CCeEEEEecccCcccccceeecCC----CceeEEEcCCCCEEEEEe-------------------cCcEEEEecCCc-ce
Confidence 88787776532 1111111222 24588999987 444443 223555543222 22
Q ss_pred EEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCc
Q 016199 229 VLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEF 302 (393)
Q Consensus 229 ~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r 302 (393)
... -...+.+++++||+..+.|.. ..+.|..|.+.|....+..... ...+-+..++.++||.++.++-..|
T Consensus 439 ~~~-~~y~~s~vAv~~~~~~vaVGG-~Dgkvhvysl~g~~l~ee~~~~-~h~a~iT~vaySpd~~yla~~Da~r 509 (603)
T KOG0318|consen 439 SIP-IGYESSAVAVSPDGSEVAVGG-QDGKVHVYSLSGDELKEEAKLL-EHRAAITDVAYSPDGAYLAAGDASR 509 (603)
T ss_pred eec-cccccceEEEcCCCCEEEEec-ccceEEEEEecCCcccceeeee-cccCCceEEEECCCCcEEEEeccCC
Confidence 221 224578999999998776665 4677999999875322211222 3455577899999999998887653
No 39
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.61 E-value=2.7e-05 Score=77.98 Aligned_cols=176 Identities=14% Similarity=0.120 Sum_probs=105.3
Q ss_pred eEEEecCCCEEEEEec---CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCC---ceEEEe
Q 016199 87 DLLYDAHSKLIYTGCE---DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYK---GLLKIS 160 (393)
Q Consensus 87 ~ia~d~~g~~L~~~~~---~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~---gl~~id 160 (393)
+++++|||+.|+..+. ...|++++.+++. ...+....+.....++.++| +.|++..... .|+.++
T Consensus 208 ~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~----~~~l~~~~g~~~~~~~SpDG-----~~l~~~~s~~g~~~Iy~~d 278 (433)
T PRK04922 208 SPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ----RELVASFRGINGAPSFSPDG-----RRLALTLSRDGNPEIYVMD 278 (433)
T ss_pred cccCCCCCCEEEEEecCCCCcEEEEEECCCCC----EEEeccCCCCccCceECCCC-----CEEEEEEeCCCCceEEEEE
Confidence 4678999986665443 2369999988765 44443323333467889998 2455443322 388888
Q ss_pred CCc--eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCC
Q 016199 161 GNS--TVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFA 237 (393)
Q Consensus 161 ~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ 237 (393)
.++ .+.+... .+ ......+++||. |+++... .+...||.+|..+++.+.+.......
T Consensus 279 ~~~g~~~~lt~~-~~----~~~~~~~spDG~~l~f~sd~---------------~g~~~iy~~dl~~g~~~~lt~~g~~~ 338 (433)
T PRK04922 279 LGSRQLTRLTNH-FG----IDTEPTWAPDGKSIYFTSDR---------------GGRPQIYRVAASGGSAERLTFQGNYN 338 (433)
T ss_pred CCCCCeEECccC-CC----CccceEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEEeecCCCCc
Confidence 765 3333211 11 123568899995 6665310 12236999998877776654333344
Q ss_pred CcEEEcCCCCEEEEEeCCC--CeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEE
Q 016199 238 NGVVLSPDQTHLVYCETSM--RRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLI 296 (393)
Q Consensus 238 ngi~~s~dg~~l~v~~~~~--~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwv 296 (393)
...+++|||+.++++.... .+|+.+++++. +...+... . ......+++||+..+
T Consensus 339 ~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g---~~~~Lt~~-~-~~~~p~~spdG~~i~ 394 (433)
T PRK04922 339 ARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG---SVRTLTPG-S-LDESPSFAPNGSMVL 394 (433)
T ss_pred cCEEECCCCCEEEEEECCCCceeEEEEECCCC---CeEECCCC-C-CCCCceECCCCCEEE
Confidence 5689999999998875433 36888887543 22223211 1 233467889998443
No 40
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.61 E-value=3.9e-05 Score=76.71 Aligned_cols=177 Identities=14% Similarity=0.137 Sum_probs=105.4
Q ss_pred eEEEecCCCEEEEEec-C--CeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCC---ceEEEe
Q 016199 87 DLLYDAHSKLIYTGCE-D--GWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYK---GLLKIS 160 (393)
Q Consensus 87 ~ia~d~~g~~L~~~~~-~--g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~---gl~~id 160 (393)
+++|+|||+.|+..+. + ..|+.++.+++. ...+....+.....++.+|| +.|+++.... .|+.++
T Consensus 200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~----~~~l~~~~g~~~~~~~SPDG-----~~la~~~~~~g~~~Iy~~d 270 (427)
T PRK02889 200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGR----RRVVANFKGSNSAPAWSPDG-----RTLAVALSRDGNSQIYTVN 270 (427)
T ss_pred cceEcCCCCEEEEEEccCCCcEEEEEECCCCC----EEEeecCCCCccceEECCCC-----CEEEEEEccCCCceEEEEE
Confidence 4689999987755443 3 359999988765 44443333444578899998 2455543332 388888
Q ss_pred CCc--eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCC
Q 016199 161 GNS--TVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFA 237 (393)
Q Consensus 161 ~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ 237 (393)
.++ .+.+... .+ ......+++||+ |+++... .+.-.||.++..+++.+.+.......
T Consensus 271 ~~~~~~~~lt~~-~~----~~~~~~wSpDG~~l~f~s~~---------------~g~~~Iy~~~~~~g~~~~lt~~g~~~ 330 (427)
T PRK02889 271 ADGSGLRRLTQS-SG----IDTEPFFSPDGRSIYFTSDR---------------GGAPQIYRMPASGGAAQRVTFTGSYN 330 (427)
T ss_pred CCCCCcEECCCC-CC----CCcCeEEcCCCCEEEEEecC---------------CCCcEEEEEECCCCceEEEecCCCCc
Confidence 765 3333221 11 123567899994 6665310 12346899988777665554322333
Q ss_pred CcEEEcCCCCEEEEEeCCC--CeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEE
Q 016199 238 NGVVLSPDQTHLVYCETSM--RRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIA 297 (393)
Q Consensus 238 ngi~~s~dg~~l~v~~~~~--~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva 297 (393)
...+++|||+.++++.... ..|+.+++++. +...+... .......+++||+..+.
T Consensus 331 ~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g---~~~~lt~~--~~~~~p~~spdg~~l~~ 387 (427)
T PRK02889 331 TSPRISPDGKLLAYISRVGGAFKLYVQDLATG---QVTALTDT--TRDESPSFAPNGRYILY 387 (427)
T ss_pred CceEECCCCCEEEEEEccCCcEEEEEEECCCC---CeEEccCC--CCccCceECCCCCEEEE
Confidence 4578999999887765433 36888887543 22222211 12345678899984443
No 41
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.60 E-value=3.8e-05 Score=70.54 Aligned_cols=189 Identities=14% Similarity=0.230 Sum_probs=114.6
Q ss_pred CCCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeecC-CCceeeeEECCCCCCCCceEEEEEeCCC-ce--E
Q 016199 83 KGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWINT-GGRPLGIAFANSDPDADRITMIVADAYK-GL--L 157 (393)
Q Consensus 83 ~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~~-~~~p~gl~~d~~G~~~~~~~L~v~~~~~-gl--~ 157 (393)
..-.+++|+|+.+.||+.+. ...|+.++.++.- +..+.-. ...|.+|..-.+| .+.+++-.. .+ +
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdl----irtiPL~g~~DpE~Ieyig~n------~fvi~dER~~~l~~~ 155 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDL----IRTIPLTGFSDPETIEYIGGN------QFVIVDERDRALYLF 155 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEEecCCce----EEEecccccCChhHeEEecCC------EEEEEehhcceEEEE
Confidence 44567999999999997665 4479999887654 4444322 2468888888777 666666533 34 4
Q ss_pred EEeCCc-eEEEee---ccC--CccccccccEEEcCC-CcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE
Q 016199 158 KISGNS-TVLLTD---EAE--GQKFKLTDGVDVADD-GMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL 230 (393)
Q Consensus 158 ~id~~g-~~~l~~---~~~--g~~~~~~~~l~~d~d-G~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~ 230 (393)
.+++++ ...... ..+ ......-.|++.|+. +++||+- |..+ -+||.++........-
T Consensus 156 ~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aK---------------Er~P-~~I~~~~~~~~~l~~~ 219 (316)
T COG3204 156 TVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAK---------------ERNP-IGIFEVTQSPSSLSVH 219 (316)
T ss_pred EEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEE---------------ccCC-cEEEEEecCCcccccc
Confidence 456665 211111 111 111223468999995 4899983 3333 3588887543222221
Q ss_pred ec-----C----ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeec-------cCCCCCCeEEECCCCCE
Q 016199 231 VS-----D----LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIE-------TLPGLPDNIRYDGEGHY 294 (393)
Q Consensus 231 ~~-----~----l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~-------~l~g~P~~i~~d~~G~l 294 (393)
.. . +.-..|+.+++....++|-.-...++..++.+|+-.+.. .+.+ ..| .+.||+.|.+|++
T Consensus 220 ~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~l-sL~~g~~gL~~dip-qaEGiamDd~g~l 297 (316)
T COG3204 220 ASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELL-SLTKGNHGLSSDIP-QAEGIAMDDDGNL 297 (316)
T ss_pred cccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeE-EeccCCCCCcccCC-CcceeEECCCCCE
Confidence 11 0 122456777766667777766678888999877631111 1111 233 4789999999999
Q ss_pred EEEEe
Q 016199 295 LIALA 299 (393)
Q Consensus 295 wva~~ 299 (393)
||..-
T Consensus 298 YIvSE 302 (316)
T COG3204 298 YIVSE 302 (316)
T ss_pred EEEec
Confidence 99765
No 42
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=0.00027 Score=65.17 Aligned_cols=243 Identities=13% Similarity=0.134 Sum_probs=145.4
Q ss_pred CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeC--CCceEEEe
Q 016199 83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADA--YKGLLKIS 160 (393)
Q Consensus 83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~--~~gl~~id 160 (393)
.-++++.++++|..|.+++.+..+..|+...+. .+..+....-++.-++|.... +.+.-+.. ..-|..++
T Consensus 15 ~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~---~~~ti~skkyG~~~~~Fth~~-----~~~i~sStk~d~tIryLs 86 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSEDDSLRLYDSLSGK---QVKTINSKKYGVDLACFTHHS-----NTVIHSSTKEDDTIRYLS 86 (311)
T ss_pred CceeEEEecCCCCEEEEecCCCeEEEEEcCCCc---eeeEeecccccccEEEEecCC-----ceEEEccCCCCCceEEEE
Confidence 446789999999988888888888888876554 134443332345555555433 03333322 12244444
Q ss_pred CCceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcE
Q 016199 161 GNSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGV 240 (393)
Q Consensus 161 ~~g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi 240 (393)
....+.+ ..+.|.. ..++.|.+.|-+..+++. +....|.-||....+...+.. +..+...
T Consensus 87 l~dNkyl-RYF~GH~-~~V~sL~~sP~~d~FlS~-----------------S~D~tvrLWDlR~~~cqg~l~-~~~~pi~ 146 (311)
T KOG1446|consen 87 LHDNKYL-RYFPGHK-KRVNSLSVSPKDDTFLSS-----------------SLDKTVRLWDLRVKKCQGLLN-LSGRPIA 146 (311)
T ss_pred eecCceE-EEcCCCC-ceEEEEEecCCCCeEEec-----------------ccCCeEEeeEecCCCCceEEe-cCCCcce
Confidence 3221111 1234443 347889999988888874 334567788877665554443 3445668
Q ss_pred EEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCC--CCeEEECCCCC-EEEEEecCcchhhhhhhcCcchhh
Q 016199 241 VLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGL--PDNIRYDGEGH-YLIALATEFSTYWDLAYRYPFIRK 317 (393)
Q Consensus 241 ~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~--P~~i~~d~~G~-lwva~~~~r~~~~~~~~~~~~~r~ 317 (393)
|++|+| .++.....+..|..||+..-..+....|.-+.+.. -.++.++++|+ +.+++..
T Consensus 147 AfDp~G-LifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~----------------- 208 (311)
T KOG1446|consen 147 AFDPEG-LIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA----------------- 208 (311)
T ss_pred eECCCC-cEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC-----------------
Confidence 899999 56666666669999998643345555554221212 24588999999 4566553
Q ss_pred hhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCC----CCccEEEEEeCCEEEEEecCCCeEEEEeCCCCCCC
Q 016199 318 VSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPE----MSLISSAIKIGDHLYCGSVHHRGILHLDVNQHPAR 390 (393)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~----~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~~~~~ 390 (393)
+-+..+|. +|.+...+.... .. .......++...+++.....|...+++....+
T Consensus 209 ------------------s~~~~lDAf~G~~~~tfs~~~~~~~~~-~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v 267 (311)
T KOG1446|consen 209 ------------------SFIYLLDAFDGTVKSTFSGYPNAGNLP-LSATFTPDSKFVLSGSDDGTIHVWNLETGKKV 267 (311)
T ss_pred ------------------CcEEEEEccCCcEeeeEeeccCCCCcc-eeEEECCCCcEEEEecCCCcEEEEEcCCCcEe
Confidence 23666775 888888877533 22 23333355666666666677777777554443
No 43
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=98.59 E-value=1.5e-05 Score=84.72 Aligned_cols=185 Identities=19% Similarity=0.324 Sum_probs=121.7
Q ss_pred ccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCC----CceeeeEECC-CCCCCCceEEEEEeCC-C
Q 016199 81 VLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTG----GRPLGIAFAN-SDPDADRITMIVADAY-K 154 (393)
Q Consensus 81 ~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~----~~p~gl~~d~-~G~~~~~~~L~v~~~~-~ 154 (393)
.+..|-.+|..+||. ||+|+.+- |.|+.+++. +..+...+ ..-..|+++| +| .|||.+.. .
T Consensus 363 ~L~aPvala~a~DGS-l~VGDfNy-IRRI~~dg~-----v~tIl~L~~t~~sh~Yy~AvsPvdg------tlyvSdp~s~ 429 (1899)
T KOG4659|consen 363 SLFAPVALAYAPDGS-LIVGDFNY-IRRISQDGQ-----VSTILTLGLTDTSHSYYIAVSPVDG------TLYVSDPLSK 429 (1899)
T ss_pred eeeceeeEEEcCCCc-EEEccchh-eeeecCCCc-----eEEEEEecCCCccceeEEEecCcCc------eEEecCCCcc
Confidence 457799999999997 99998774 888887765 34333322 2346899998 88 99999874 4
Q ss_pred ceEEEe---C---Cc-eEEEe---------eccC-------CccccccccEEEcCCCcEEEEeCCCccchhhheehhccc
Q 016199 155 GLLKIS---G---NS-TVLLT---------DEAE-------GQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEG 211 (393)
Q Consensus 155 gl~~id---~---~g-~~~l~---------~~~~-------g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~ 211 (393)
.|+++. + .+ .++++ ++.. ...+.+|.||++|++|.|||+|..
T Consensus 430 qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g~lYfaD~t--------------- 494 (1899)
T KOG4659|consen 430 QVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMGNLYFADGT--------------- 494 (1899)
T ss_pred eEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccCCcEEEeccc---------------
Confidence 588873 1 11 23332 1111 123678999999999999999843
Q ss_pred CCCcEEEEEeCCCCeEEEEec--------------------CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCC---
Q 016199 212 KPNGRLLSFDPVTKETKVLVS--------------------DLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKN--- 268 (393)
Q Consensus 212 ~~~g~l~~~d~~t~~~~~~~~--------------------~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~--- 268 (393)
+|..+|.. +-++.+.. .+.+|..++++|=...|||.++ +-|++++..+.-
T Consensus 495 ----~IR~iD~~-giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~--nvvlrit~~~rV~Ii 567 (1899)
T KOG4659|consen 495 ----RIRVIDTT-GIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDT--NVVLRITVVHRVRII 567 (1899)
T ss_pred ----EEEEeccC-ceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeec--ceEEEEccCccEEEE
Confidence 34555543 33333211 2678999999997668999886 667777754320
Q ss_pred CcceeeeeccCC---------------CCCCeEEECCCCCEEEEEecCc
Q 016199 269 AGRVEKFIETLP---------------GLPDNIRYDGEGHYLIALATEF 302 (393)
Q Consensus 269 ~~~~~~~~~~l~---------------g~P~~i~~d~~G~lwva~~~~r 302 (393)
.|... .. .++ -.+..|++..+|-+||+...+|
T Consensus 568 ~GrP~-hC-~~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~r 614 (1899)
T KOG4659|consen 568 LGRPT-HC-DLANATSSASKLADHRTLLIQRDIAVGTDGALYVAESDGR 614 (1899)
T ss_pred cCCcc-cc-ccCCCchhhhhhhhhhhhhhhhceeecCCceEEEEeccch
Confidence 11110 00 111 1367899999999999988764
No 44
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.58 E-value=0.00016 Score=72.36 Aligned_cols=140 Identities=11% Similarity=0.122 Sum_probs=82.9
Q ss_pred ceeeeEECCCCCCCCceEEEEEeCC---CceEEEeCCc--eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchh
Q 016199 129 RPLGIAFANSDPDADRITMIVADAY---KGLLKISGNS--TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLR 202 (393)
Q Consensus 129 ~p~gl~~d~~G~~~~~~~L~v~~~~---~gl~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~ 202 (393)
.....++.+|| +.|.+.... ..|+.++.++ .+.+. ...+ ....+.++||| .|+++...
T Consensus 200 ~~~~p~wSPDG-----~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~----~~~~~~~SPDG~~La~~~~~------ 263 (429)
T PRK03629 200 PLMSPAWSPDG-----SKLAYVTFESGRSALVIQTLANGAVRQVA-SFPR----HNGAPAFSPDGSKLAFALSK------ 263 (429)
T ss_pred ceeeeEEcCCC-----CEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCC----CcCCeEECCCCCEEEEEEcC------
Confidence 34578889998 234333222 2477777654 33332 2222 12357899999 46665311
Q ss_pred hheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCC--CCeEEEEEecCCCCcceeeeeccCC
Q 016199 203 EYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETS--MRRCRKFYIKGKNAGRVEKFIETLP 280 (393)
Q Consensus 203 ~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~--~~ri~~~~~~g~~~~~~~~~~~~l~ 280 (393)
.+...|+.+|.++++.+.+...-......+++|||+.|+++... ...|+++++++. ..+.+. ...
T Consensus 264 ---------~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g---~~~~lt-~~~ 330 (429)
T PRK03629 264 ---------TGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG---APQRIT-WEG 330 (429)
T ss_pred ---------CCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC---CeEEee-cCC
Confidence 22336999999988887776554455678999999977655432 237888887543 222232 112
Q ss_pred CCCCeEEECCCCCEEEE
Q 016199 281 GLPDNIRYDGEGHYLIA 297 (393)
Q Consensus 281 g~P~~i~~d~~G~lwva 297 (393)
+.....++++||+..+.
T Consensus 331 ~~~~~~~~SpDG~~Ia~ 347 (429)
T PRK03629 331 SQNQDADVSSDGKFMVM 347 (429)
T ss_pred CCccCEEECCCCCEEEE
Confidence 22345778899985543
No 45
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.56 E-value=2.6e-06 Score=86.79 Aligned_cols=186 Identities=18% Similarity=0.210 Sum_probs=125.7
Q ss_pred CCCceEEEecCCCEEEEEecCC-eEEEEEcCCCCCcceeeeeecC-CCceeeeEECCCCCCCCceEEEEEeCC-CceEEE
Q 016199 83 KGPEDLLYDAHSKLIYTGCEDG-WIKRVTLNDSPADSLVHNWINT-GGRPLGIAFANSDPDADRITMIVADAY-KGLLKI 159 (393)
Q Consensus 83 ~~Pe~ia~d~~g~~L~~~~~~g-~I~~~~~~~~~~~~~~~~~~~~-~~~p~gl~~d~~G~~~~~~~L~v~~~~-~gl~~i 159 (393)
.-|-+|.||-..+.+|+.+..| .|.+-.+++.+ .+.+.+. -..|.||++|.-+ +++|.+|+- ..|-.-
T Consensus 1025 ~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~E----p~ti~n~~L~SPEGiAVDh~~-----Rn~ywtDS~lD~IevA 1095 (1289)
T KOG1214|consen 1025 SIIVGIDFDCRERMVYWTDVAGRSISRASLEGAE----PETIVNSGLISPEGIAVDHIR-----RNMYWTDSVLDKIEVA 1095 (1289)
T ss_pred ceeeeeecccccceEEEeecCCCccccccccCCC----CceeecccCCCccceeeeecc-----ceeeeeccccchhhee
Confidence 3466688888777777766544 67777777655 4555442 3579999999877 378888763 334444
Q ss_pred eCCc--eEEEeeccCCccccccccEEEcC-CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE-ecCcc
Q 016199 160 SGNS--TVLLTDEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL-VSDLY 235 (393)
Q Consensus 160 d~~g--~~~l~~~~~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~-~~~l~ 235 (393)
..+| .++|... + +-.+.+|++|+ .|+||.+|.-. .+-.|-+-+++++.-+.+ .+++.
T Consensus 1096 ~LdG~~rkvLf~t--d--LVNPR~iv~D~~rgnLYwtDWnR---------------enPkIets~mDG~NrRilin~Dig 1156 (1289)
T KOG1214|consen 1096 LLDGSERKVLFYT--D--LVNPRAIVVDPIRGNLYWTDWNR---------------ENPKIETSSMDGENRRILINTDIG 1156 (1289)
T ss_pred ecCCceeeEEEee--c--ccCcceEEeecccCceeeccccc---------------cCCcceeeccCCccceEEeecccC
Confidence 4556 3444321 1 23467899998 67999997322 122355666665544444 56799
Q ss_pred CCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecC
Q 016199 236 FANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATE 301 (393)
Q Consensus 236 ~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~ 301 (393)
.|||+.|+|..+.|-|.+.++.|+.....+|. ++..++ .+|. +|-+|.-+.+. +|...|..
T Consensus 1157 LPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~--gRR~i~-~~Lq-YPF~itsy~~~-fY~TDWk~ 1217 (1289)
T KOG1214|consen 1157 LPNGLTFDPFSKLLCWVDAGTKRLECTLPDGT--GRRVIQ-NNLQ-YPFSITSYADH-FYHTDWKR 1217 (1289)
T ss_pred CCCCceeCcccceeeEEecCCcceeEecCCCC--cchhhh-hccc-Cceeeeecccc-ceeecccc
Confidence 99999999999999999999999999887653 444333 3554 78888877666 77766643
No 46
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.55 E-value=7.5e-05 Score=74.68 Aligned_cols=177 Identities=15% Similarity=0.121 Sum_probs=106.4
Q ss_pred ceEEEecCCCEE-EEEecC--CeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCC---ceEEE
Q 016199 86 EDLLYDAHSKLI-YTGCED--GWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYK---GLLKI 159 (393)
Q Consensus 86 e~ia~d~~g~~L-~~~~~~--g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~---gl~~i 159 (393)
.+..++|||+.| |++..+ ..|+.++.+++. .+.+....+.....++.++| +.|++..... .|+.+
T Consensus 202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~----~~~l~~~~g~~~~~~~SpDG-----~~la~~~~~~g~~~Iy~~ 272 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR----REQITNFEGLNGAPAWSPDG-----SKLAFVLSKDGNPEIYVM 272 (430)
T ss_pred eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC----EEEccCCCCCcCCeEECCCC-----CEEEEEEccCCCceEEEE
Confidence 456899999866 454443 369999988765 44443333334467889998 2455443332 38888
Q ss_pred eCCc--eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccC
Q 016199 160 SGNS--TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYF 236 (393)
Q Consensus 160 d~~g--~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~ 236 (393)
|.++ .+.+... .+ ......+++|| .|+++... .+...||++|..+++.+.+......
T Consensus 273 d~~~~~~~~lt~~-~~----~~~~~~~spDg~~i~f~s~~---------------~g~~~iy~~d~~~g~~~~lt~~~~~ 332 (430)
T PRK00178 273 DLASRQLSRVTNH-PA----IDTEPFWGKDGRTLYFTSDR---------------GGKPQIYKVNVNGGRAERVTFVGNY 332 (430)
T ss_pred ECCCCCeEEcccC-CC----CcCCeEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEeecCCCC
Confidence 8766 3334321 11 12345788898 47776311 2234799999888877665433233
Q ss_pred CCcEEEcCCCCEEEEEeCCCC--eEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEE
Q 016199 237 ANGVVLSPDQTHLVYCETSMR--RCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLI 296 (393)
Q Consensus 237 ~ngi~~s~dg~~l~v~~~~~~--ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwv 296 (393)
.....++|||+.++++....+ .|+.+++++. +.+.+.+. +......++++|+..+
T Consensus 333 ~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg---~~~~lt~~--~~~~~p~~spdg~~i~ 389 (430)
T PRK00178 333 NARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG---SVRILTDT--SLDESPSVAPNGTMLI 389 (430)
T ss_pred ccceEECCCCCEEEEEEccCCceEEEEEECCCC---CEEEccCC--CCCCCceECCCCCEEE
Confidence 345689999999988875433 5888887543 23333211 1223457888988443
No 47
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.55 E-value=8.1e-05 Score=72.83 Aligned_cols=174 Identities=20% Similarity=0.267 Sum_probs=101.3
Q ss_pred CEEEEEec-CCeEEEEEcCCCCCcceeeeeecCCCce-eeeEECCCCCCCCceEEEEEeCCCceEEEeCCceEEEeeccC
Q 016199 95 KLIYTGCE-DGWIKRVTLNDSPADSLVHNWINTGGRP-LGIAFANSDPDADRITMIVADAYKGLLKISGNSTVLLTDEAE 172 (393)
Q Consensus 95 ~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~~~~~p-~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g~~~l~~~~~ 172 (393)
+.+|+... ++.|..+|.++.+ +......++.+ .++++.+|| +.+|+++..+.|..+|....+.+..-..
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~----~~~~i~~~~~~h~~~~~s~Dg-----r~~yv~~rdg~vsviD~~~~~~v~~i~~ 76 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNK----VVARIPTGGAPHAGLKFSPDG-----RYLYVANRDGTVSVIDLATGKVVATIKV 76 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-S----EEEEEE-STTEEEEEE-TT-S-----SEEEEEETTSEEEEEETTSSSEEEEEE-
T ss_pred cEEEEEecCCCEEEEEECCCCe----EEEEEcCCCCceeEEEecCCC-----CEEEEEcCCCeEEEEECCcccEEEEEec
Confidence 45556554 7889999987755 33333334454 457889998 3699997767788999866223322222
Q ss_pred CccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE-EecC-------ccCCCcEEEc
Q 016199 173 GQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV-LVSD-------LYFANGVVLS 243 (393)
Q Consensus 173 g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~-~~~~-------l~~~ngi~~s 243 (393)
| ..+.++++++||+ +|+++ ...+.+-.+|.++.+... +... -....+|..+
T Consensus 77 G---~~~~~i~~s~DG~~~~v~n-----------------~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s 136 (369)
T PF02239_consen 77 G---GNPRGIAVSPDGKYVYVAN-----------------YEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVAS 136 (369)
T ss_dssp S---SEEEEEEE--TTTEEEEEE-----------------EETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-
T ss_pred C---CCcceEEEcCCCCEEEEEe-----------------cCCCceeEeccccccceeecccccccccccCCCceeEEec
Confidence 2 2356899999995 66675 234578899987765432 2111 1233567677
Q ss_pred CCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199 244 PDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA 299 (393)
Q Consensus 244 ~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~ 299 (393)
+.+...+++-...++|+..+....+.-.. ... ....+|.+..+|++|+++++..
T Consensus 137 ~~~~~fVv~lkd~~~I~vVdy~d~~~~~~-~~i-~~g~~~~D~~~dpdgry~~va~ 190 (369)
T PF02239_consen 137 PGRPEFVVNLKDTGEIWVVDYSDPKNLKV-TTI-KVGRFPHDGGFDPDGRYFLVAA 190 (369)
T ss_dssp SSSSEEEEEETTTTEEEEEETTTSSCEEE-EEE-E--TTEEEEEE-TTSSEEEEEE
T ss_pred CCCCEEEEEEccCCeEEEEEeccccccce-eee-cccccccccccCcccceeeecc
Confidence 88776777777789999999764321111 122 2334788899999999775543
No 48
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.54 E-value=0.00017 Score=72.65 Aligned_cols=139 Identities=10% Similarity=0.087 Sum_probs=82.0
Q ss_pred eeeeEECCCCCCCCceEEEEEeCCC---ceEEEeCCc--eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhh
Q 016199 130 PLGIAFANSDPDADRITMIVADAYK---GLLKISGNS--TVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLRE 203 (393)
Q Consensus 130 p~gl~~d~~G~~~~~~~L~v~~~~~---gl~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~ 203 (393)
.....+++|| +.|++..... .|+.+|.++ .+.+. ...+. .....++|||+ |+++...
T Consensus 220 ~~~p~wSPDG-----~~La~~s~~~g~~~L~~~dl~tg~~~~lt-~~~g~----~~~~~wSPDG~~La~~~~~------- 282 (448)
T PRK04792 220 LMSPAWSPDG-----RKLAYVSFENRKAEIFVQDIYTQVREKVT-SFPGI----NGAPRFSPDGKKLALVLSK------- 282 (448)
T ss_pred ccCceECCCC-----CEEEEEEecCCCcEEEEEECCCCCeEEec-CCCCC----cCCeeECCCCCEEEEEEeC-------
Confidence 3567888888 2454432222 388888765 33332 22221 23568899995 6665211
Q ss_pred heehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCC--CCeEEEEEecCCCCcceeeeeccCCC
Q 016199 204 YILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETS--MRRCRKFYIKGKNAGRVEKFIETLPG 281 (393)
Q Consensus 204 ~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~--~~ri~~~~~~g~~~~~~~~~~~~l~g 281 (393)
.+...||.+|.++++.+.+..........++++||+.++++... ...|+++++++. +.+.+... ..
T Consensus 283 --------~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g---~~~~Lt~~-g~ 350 (448)
T PRK04792 283 --------DGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG---KVSRLTFE-GE 350 (448)
T ss_pred --------CCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC---CEEEEecC-CC
Confidence 22346999999988877765544445667899999988776543 346888887543 22222211 11
Q ss_pred CCCeEEECCCCCEEEE
Q 016199 282 LPDNIRYDGEGHYLIA 297 (393)
Q Consensus 282 ~P~~i~~d~~G~lwva 297 (393)
...+.++++||+..+-
T Consensus 351 ~~~~~~~SpDG~~l~~ 366 (448)
T PRK04792 351 QNLGGSITPDGRSMIM 366 (448)
T ss_pred CCcCeeECCCCCEEEE
Confidence 2234578889985443
No 49
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.54 E-value=0.00013 Score=73.18 Aligned_cols=138 Identities=11% Similarity=0.132 Sum_probs=82.0
Q ss_pred eeeeEECCCCCCCCceEEEEEeCCC---ceEEEeCCc--eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhh
Q 016199 130 PLGIAFANSDPDADRITMIVADAYK---GLLKISGNS--TVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLRE 203 (393)
Q Consensus 130 p~gl~~d~~G~~~~~~~L~v~~~~~---gl~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~ 203 (393)
....++.++| +.|+.+.... .|+.++.++ .+.+. ...+. .....+++||. |+++...
T Consensus 206 v~~p~wSpDg-----~~la~~s~~~~~~~l~~~dl~~g~~~~l~-~~~g~----~~~~~~SpDG~~l~~~~s~------- 268 (433)
T PRK04922 206 ILSPAWSPDG-----KKLAYVSFERGRSAIYVQDLATGQRELVA-SFRGI----NGAPSFSPDGRRLALTLSR------- 268 (433)
T ss_pred cccccCCCCC-----CEEEEEecCCCCcEEEEEECCCCCEEEec-cCCCC----ccCceECCCCCEEEEEEeC-------
Confidence 4566778888 2455543322 388888765 33332 22221 23568999994 6665211
Q ss_pred heehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCC--CeEEEEEecCCCCcceeeeeccCCC
Q 016199 204 YILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSM--RRCRKFYIKGKNAGRVEKFIETLPG 281 (393)
Q Consensus 204 ~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~--~ri~~~~~~g~~~~~~~~~~~~l~g 281 (393)
.+...||.+|..+++.+.+..........++++||+.++++.... ..|+.+++++. +.+.+. ....
T Consensus 269 --------~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g---~~~~lt-~~g~ 336 (433)
T PRK04922 269 --------DGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG---SAERLT-FQGN 336 (433)
T ss_pred --------CCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC---CeEEee-cCCC
Confidence 223469999999888776655433445688999999887765333 35888887543 222222 1122
Q ss_pred CCCeEEECCCCCEEE
Q 016199 282 LPDNIRYDGEGHYLI 296 (393)
Q Consensus 282 ~P~~i~~d~~G~lwv 296 (393)
.....+++++|+..+
T Consensus 337 ~~~~~~~SpDG~~Ia 351 (433)
T PRK04922 337 YNARASVSPDGKKIA 351 (433)
T ss_pred CccCEEECCCCCEEE
Confidence 334578899998543
No 50
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.54 E-value=8.2e-05 Score=74.59 Aligned_cols=176 Identities=12% Similarity=0.090 Sum_probs=108.0
Q ss_pred ceEEEecCCCEEE-EEec--CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC---CceEEE
Q 016199 86 EDLLYDAHSKLIY-TGCE--DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY---KGLLKI 159 (393)
Q Consensus 86 e~ia~d~~g~~L~-~~~~--~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~---~gl~~i 159 (393)
.+++|+|||+.|. ++.. +..|+.++..++. ...+....+.....++.+|| +.|++.... ..|+.+
T Consensus 205 ~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~----~~~l~~~~g~~~~~~~SPDG-----~~la~~~~~~g~~~Iy~~ 275 (435)
T PRK05137 205 LTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ----RELVGNFPGMTFAPRFSPDG-----RKVVMSLSQGGNTDIYTM 275 (435)
T ss_pred EeeEECCCCCEEEEEEecCCCCEEEEEECCCCc----EEEeecCCCcccCcEECCCC-----CEEEEEEecCCCceEEEE
Confidence 3477999998654 4433 3479999988765 44444333444677889999 245444332 238888
Q ss_pred eCCc--eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccC
Q 016199 160 SGNS--TVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYF 236 (393)
Q Consensus 160 d~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~ 236 (393)
|.++ ...+... .+ ......+++||+ |+|+... .+...||.+|..+++.+.+......
T Consensus 276 d~~~~~~~~Lt~~-~~----~~~~~~~spDG~~i~f~s~~---------------~g~~~Iy~~d~~g~~~~~lt~~~~~ 335 (435)
T PRK05137 276 DLRSGTTTRLTDS-PA----IDTSPSYSPDGSQIVFESDR---------------SGSPQLYVMNADGSNPRRISFGGGR 335 (435)
T ss_pred ECCCCceEEccCC-CC----ccCceeEcCCCCEEEEEECC---------------CCCCeEEEEECCCCCeEEeecCCCc
Confidence 8765 3334221 11 123467889994 6665311 2234699999988877766544333
Q ss_pred CCcEEEcCCCCEEEEEeCCC--CeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEE
Q 016199 237 ANGVVLSPDQTHLVYCETSM--RRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYL 295 (393)
Q Consensus 237 ~ngi~~s~dg~~l~v~~~~~--~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lw 295 (393)
.....++|||+.++++.... .+|+.+++++.. ...+. . ........+++||+..
T Consensus 336 ~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~---~~~lt-~-~~~~~~p~~spDG~~i 391 (435)
T PRK05137 336 YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG---ERILT-S-GFLVEGPTWAPNGRVI 391 (435)
T ss_pred ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc---eEecc-C-CCCCCCCeECCCCCEE
Confidence 45578999999988876433 478888875432 22222 1 1124567889999844
No 51
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.52 E-value=9e-05 Score=74.15 Aligned_cols=179 Identities=12% Similarity=0.053 Sum_probs=107.6
Q ss_pred eEEEecCCCEEE-EEec--CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCC---ceEEEe
Q 016199 87 DLLYDAHSKLIY-TGCE--DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYK---GLLKIS 160 (393)
Q Consensus 87 ~ia~d~~g~~L~-~~~~--~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~---gl~~id 160 (393)
+++++|||+.|. +... ...|+.++.++++ .+.+....+.....++.+|| +.|++..... .|+.+|
T Consensus 203 ~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~----~~~l~~~~~~~~~~~~SPDG-----~~La~~~~~~g~~~I~~~d 273 (429)
T PRK03629 203 SPAWSPDGSKLAYVTFESGRSALVIQTLANGA----VRQVASFPRHNGAPAFSPDG-----SKLAFALSKTGSLNLYVMD 273 (429)
T ss_pred eeEEcCCCCEEEEEEecCCCcEEEEEECCCCC----eEEccCCCCCcCCeEECCCC-----CEEEEEEcCCCCcEEEEEE
Confidence 578999998654 4333 3368888887765 44433323334467899999 2455543322 388888
Q ss_pred CCc--eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCC
Q 016199 161 GNS--TVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFA 237 (393)
Q Consensus 161 ~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ 237 (393)
.++ .+.+... . .......++|||+ |+++... ...-.||.+|.++++.+.+.......
T Consensus 274 ~~tg~~~~lt~~---~--~~~~~~~wSPDG~~I~f~s~~---------------~g~~~Iy~~d~~~g~~~~lt~~~~~~ 333 (429)
T PRK03629 274 LASGQIRQVTDG---R--SNNTEPTWFPDSQNLAYTSDQ---------------AGRPQVYKVNINGGAPQRITWEGSQN 333 (429)
T ss_pred CCCCCEEEccCC---C--CCcCceEECCCCCEEEEEeCC---------------CCCceEEEEECCCCCeEEeecCCCCc
Confidence 765 4444221 1 1234678899995 6555311 12236999999888777665443445
Q ss_pred CcEEEcCCCCEEEEEeCCC--CeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199 238 NGVVLSPDQTHLVYCETSM--RRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA 299 (393)
Q Consensus 238 ngi~~s~dg~~l~v~~~~~--~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~ 299 (393)
...+++|||+.++++.... ..|+.+++++. ..+.+.+. ..-....+++||+..+...
T Consensus 334 ~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g---~~~~Lt~~--~~~~~p~~SpDG~~i~~~s 392 (429)
T PRK03629 334 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATG---GVQVLTDT--FLDETPSIAPNGTMVIYSS 392 (429)
T ss_pred cCEEECCCCCEEEEEEccCCCceEEEEECCCC---CeEEeCCC--CCCCCceECCCCCEEEEEE
Confidence 5688999999887765433 45788887543 23333211 1123467889998554433
No 52
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=98.52 E-value=7.7e-05 Score=66.70 Aligned_cols=188 Identities=16% Similarity=0.197 Sum_probs=119.2
Q ss_pred cCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEE
Q 016199 79 YGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLK 158 (393)
Q Consensus 79 ~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~ 158 (393)
+|....-..+.|..+|+.+|+|+.||.+..|+..... ....+.. ....+.+...++. -.|+++|..+.|..
T Consensus 80 e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~---~qR~~~~-~spVn~vvlhpnQ-----teLis~dqsg~irv 150 (311)
T KOG0315|consen 80 EGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS---CQRNYQH-NSPVNTVVLHPNQ-----TELISGDQSGNIRV 150 (311)
T ss_pred eccCCceEEEEEeecCeEEEecCCCceEEEEeccCcc---cchhccC-CCCcceEEecCCc-----ceEEeecCCCcEEE
Confidence 3433455668899999999999999988888877533 1222222 2445778888753 17999988788888
Q ss_pred EeCCc---eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEe----
Q 016199 159 ISGNS---TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLV---- 231 (393)
Q Consensus 159 id~~g---~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~---- 231 (393)
.|... .+.+..+.+ .++..+.+++||.+.++- ...|+.|.++.-++......
T Consensus 151 WDl~~~~c~~~liPe~~----~~i~sl~v~~dgsml~a~-----------------nnkG~cyvW~l~~~~~~s~l~P~~ 209 (311)
T KOG0315|consen 151 WDLGENSCTHELIPEDD----TSIQSLTVMPDGSMLAAA-----------------NNKGNCYVWRLLNHQTASELEPVH 209 (311)
T ss_pred EEccCCccccccCCCCC----cceeeEEEcCCCcEEEEe-----------------cCCccEEEEEccCCCccccceEhh
Confidence 88643 334432222 456789999999888774 45678888887554322111
Q ss_pred ---cCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199 232 ---SDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA 299 (393)
Q Consensus 232 ---~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~ 299 (393)
....+.--..+|||+++| .+.+....+..|+.++. -..|...+...+.--+-+++.||.|.|...
T Consensus 210 k~~ah~~~il~C~lSPd~k~l-at~ssdktv~iwn~~~~--~kle~~l~gh~rWvWdc~FS~dg~YlvTas 277 (311)
T KOG0315|consen 210 KFQAHNGHILRCLLSPDVKYL-ATCSSDKTVKIWNTDDF--FKLELVLTGHQRWVWDCAFSADGEYLVTAS 277 (311)
T ss_pred heecccceEEEEEECCCCcEE-EeecCCceEEEEecCCc--eeeEEEeecCCceEEeeeeccCccEEEecC
Confidence 112233345689999765 55556778888887653 122333322222333467889999888655
No 53
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.50 E-value=1.8e-05 Score=78.64 Aligned_cols=179 Identities=16% Similarity=0.180 Sum_probs=107.2
Q ss_pred ceEEecCccCCCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceee---eeec--CCCceeeeEECCCCC-CCCceE
Q 016199 74 SEKVGYGVLKGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVH---NWIN--TGGRPLGIAFANSDP-DADRIT 146 (393)
Q Consensus 74 ~~~l~~g~~~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~---~~~~--~~~~p~gl~~d~~G~-~~~~~~ 146 (393)
.+.+.+| +..|.+|++.+||+ +|+..+ .|+|++++.+++... .+. .+.. ..+.+++|+++++=- ....+.
T Consensus 22 ~~~va~G-L~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~-~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~ 98 (454)
T TIGR03606 22 KKVLLSG-LNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVK-VVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPY 98 (454)
T ss_pred EEEEECC-CCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCcee-eeecCCceeccCCCCceeeEEECCCccccCCCcE
Confidence 4556565 79999999999995 888888 599999987654310 011 1111 235689999985410 011126
Q ss_pred EEEEeC----------CCceEEEeCC--c-----eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccch------hh
Q 016199 147 MIVADA----------YKGLLKISGN--S-----TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYL------RE 203 (393)
Q Consensus 147 L~v~~~----------~~gl~~id~~--g-----~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~------~~ 203 (393)
||++-+ ...|.++..+ + .+.+..........+-..|++++||.|||+........ ..
T Consensus 99 lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~~ 178 (454)
T TIGR03606 99 VYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQGRNQGANFFLPN 178 (454)
T ss_pred EEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCCCCCcccccCcc
Confidence 888842 2346666432 1 12222222211123345689999999999754332100 00
Q ss_pred hee------hh---cccCCCcEEEEEeCCCC-----------eEEEEecCccCCCcEEEcCCCCEEEEEeCCC
Q 016199 204 YIL------DI---FEGKPNGRLLSFDPVTK-----------ETKVLVSDLYFANGVVLSPDQTHLVYCETSM 256 (393)
Q Consensus 204 ~~~------~~---~e~~~~g~l~~~d~~t~-----------~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~ 256 (393)
-.. .. ......|.|+|+|+++. ..+.++.++..|.|++++|+| .||++|-+.
T Consensus 179 ~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G-~Lw~~e~Gp 250 (454)
T TIGR03606 179 QAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDG-TLYASEQGP 250 (454)
T ss_pred hhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECCCC-CEEEEecCC
Confidence 000 00 01134678999998753 135677788999999999977 699998664
No 54
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.46 E-value=0.00029 Score=70.48 Aligned_cols=138 Identities=9% Similarity=0.115 Sum_probs=79.3
Q ss_pred eeeeEECCCCCCCCceEEEEEeCCC---ceEEEeCCc--eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhh
Q 016199 130 PLGIAFANSDPDADRITMIVADAYK---GLLKISGNS--TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLRE 203 (393)
Q Consensus 130 p~gl~~d~~G~~~~~~~L~v~~~~~---gl~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~ 203 (393)
....++.+|| +.|+++.... .|+.+|.++ ...+. ...+. ....+++||| .|+++..
T Consensus 198 v~~p~wSPDG-----~~la~~s~~~~~~~I~~~dl~~g~~~~l~-~~~g~----~~~~~~SPDG~~la~~~~-------- 259 (427)
T PRK02889 198 IISPAWSPDG-----TKLAYVSFESKKPVVYVHDLATGRRRVVA-NFKGS----NSAPAWSPDGRTLAVALS-------- 259 (427)
T ss_pred cccceEcCCC-----CEEEEEEccCCCcEEEEEECCCCCEEEee-cCCCC----ccceEECCCCCEEEEEEc--------
Confidence 4567888888 2454443322 388888765 33332 22221 2367899999 4666521
Q ss_pred heehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCC--CCeEEEEEecCCCCcceeeeeccCCC
Q 016199 204 YILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETS--MRRCRKFYIKGKNAGRVEKFIETLPG 281 (393)
Q Consensus 204 ~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~--~~ri~~~~~~g~~~~~~~~~~~~l~g 281 (393)
..+.-.||.+|.+++..+.+..........++++||+.++++... ...|+.+++++. ..+.+. ...+
T Consensus 260 -------~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g---~~~~lt-~~g~ 328 (427)
T PRK02889 260 -------RDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG---AAQRVT-FTGS 328 (427)
T ss_pred -------cCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC---ceEEEe-cCCC
Confidence 123346999998877766665433334567899999988765432 336777776542 222222 1112
Q ss_pred CCCeEEECCCCCEEE
Q 016199 282 LPDNIRYDGEGHYLI 296 (393)
Q Consensus 282 ~P~~i~~d~~G~lwv 296 (393)
......++++|++.+
T Consensus 329 ~~~~~~~SpDG~~Ia 343 (427)
T PRK02889 329 YNTSPRISPDGKLLA 343 (427)
T ss_pred CcCceEECCCCCEEE
Confidence 223467888998443
No 55
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.44 E-value=0.00047 Score=68.95 Aligned_cols=138 Identities=13% Similarity=0.157 Sum_probs=80.5
Q ss_pred eeeeEECCCCCCCCceEE-EEEeCC--CceEEEeCCc--eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhh
Q 016199 130 PLGIAFANSDPDADRITM-IVADAY--KGLLKISGNS--TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLRE 203 (393)
Q Consensus 130 p~gl~~d~~G~~~~~~~L-~v~~~~--~gl~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~ 203 (393)
.....+.++| +.| |+.... ..|+.++.++ .+.+. ...+. .....++||| .|+++...
T Consensus 201 ~~~p~wSpDG-----~~la~~s~~~~~~~l~~~~l~~g~~~~l~-~~~g~----~~~~~~SpDG~~la~~~~~------- 263 (430)
T PRK00178 201 ILSPRWSPDG-----KRIAYVSFEQKRPRIFVQNLDTGRREQIT-NFEGL----NGAPAWSPDGSKLAFVLSK------- 263 (430)
T ss_pred eeeeeECCCC-----CEEEEEEcCCCCCEEEEEECCCCCEEEcc-CCCCC----cCCeEECCCCCEEEEEEcc-------
Confidence 4667888888 245 333222 2388888765 33332 22221 2356889999 46665311
Q ss_pred heehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCC--CCeEEEEEecCCCCcceeeeeccCCC
Q 016199 204 YILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETS--MRRCRKFYIKGKNAGRVEKFIETLPG 281 (393)
Q Consensus 204 ~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~--~~ri~~~~~~g~~~~~~~~~~~~l~g 281 (393)
.+...||.+|.++++.+.+...........+++||+.++++... ...|+++++++.+ .+.+... ..
T Consensus 264 --------~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~---~~~lt~~-~~ 331 (430)
T PRK00178 264 --------DGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR---AERVTFV-GN 331 (430)
T ss_pred --------CCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC---EEEeecC-CC
Confidence 12346999999988877665543344567899999988776533 3478888875432 2222211 11
Q ss_pred CCCeEEECCCCCEEE
Q 016199 282 LPDNIRYDGEGHYLI 296 (393)
Q Consensus 282 ~P~~i~~d~~G~lwv 296 (393)
......++++|+..+
T Consensus 332 ~~~~~~~Spdg~~i~ 346 (430)
T PRK00178 332 YNARPRLSADGKTLV 346 (430)
T ss_pred CccceEECCCCCEEE
Confidence 223456788888433
No 56
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.43 E-value=0.00025 Score=70.68 Aligned_cols=198 Identities=11% Similarity=0.072 Sum_probs=119.8
Q ss_pred eEEEecCCCE-EEEEec---CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC---CceEEE
Q 016199 87 DLLYDAHSKL-IYTGCE---DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY---KGLLKI 159 (393)
Q Consensus 87 ~ia~d~~g~~-L~~~~~---~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~---~gl~~i 159 (393)
...|+|||+. +|..+. ...|+.++..++. .+.+....+......+.+|| ++|.+.... ..|+.+
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~----~~~lt~~~g~~~~~~~SPDG-----~~la~~~~~~g~~~Iy~~ 262 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK----KEKIASSQGMLVVSDVSKDG-----SKLLLTMAPKGQPDIYLY 262 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCCCc----EEEEecCCCcEEeeEECCCC-----CEEEEEEccCCCcEEEEE
Confidence 3678999984 664433 2469999998776 55554433434456688888 245544332 348888
Q ss_pred eCCc--eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccC
Q 016199 160 SGNS--TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYF 236 (393)
Q Consensus 160 d~~g--~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~ 236 (393)
+.++ .+.+... .+. ...-.++||| .|+|+... .+.-.||++|.++++.+.+......
T Consensus 263 dl~~g~~~~LT~~-~~~----d~~p~~SPDG~~I~F~Sdr---------------~g~~~Iy~~dl~~g~~~rlt~~g~~ 322 (419)
T PRK04043 263 DTNTKTLTQITNY-PGI----DVNGNFVEDDKRIVFVSDR---------------LGYPNIFMKKLNSGSVEQVVFHGKN 322 (419)
T ss_pred ECCCCcEEEcccC-CCc----cCccEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEeCccCCCc
Confidence 8765 4444321 111 1133688999 68887421 2234799999998888665432211
Q ss_pred CCcEEEcCCCCEEEEEeCCC--------CeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCC-EEEEEecCcchhhh
Q 016199 237 ANGVVLSPDQTHLVYCETSM--------RRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGH-YLIALATEFSTYWD 307 (393)
Q Consensus 237 ~ngi~~s~dg~~l~v~~~~~--------~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~-lwva~~~~r~~~~~ 307 (393)
+ ..++|||+.+.++.... ..|+.+++++. ..+.+... +.-....+++||+ +.++.....
T Consensus 323 -~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g---~~~~LT~~--~~~~~p~~SPDG~~I~f~~~~~~----- 390 (419)
T PRK04043 323 -N-SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD---YIRRLTAN--GVNQFPRFSSDGGSIMFIKYLGN----- 390 (419)
T ss_pred -C-ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC---CeEECCCC--CCcCCeEECCCCCEEEEEEccCC-----
Confidence 2 48999999887776543 47888887643 23333221 1222367889998 444443221
Q ss_pred hhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEee
Q 016199 308 LAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYY 352 (393)
Q Consensus 308 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~ 352 (393)
...+..++.+|+....+.
T Consensus 391 ---------------------------~~~L~~~~l~g~~~~~l~ 408 (419)
T PRK04043 391 ---------------------------QSALGIIRLNYNKSFLFP 408 (419)
T ss_pred ---------------------------cEEEEEEecCCCeeEEee
Confidence 135888898998766664
No 57
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.41 E-value=0.00026 Score=70.24 Aligned_cols=175 Identities=14% Similarity=0.127 Sum_probs=105.5
Q ss_pred eEEEecCCCEEEEEec-C--CeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCC---ceEEEe
Q 016199 87 DLLYDAHSKLIYTGCE-D--GWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYK---GLLKIS 160 (393)
Q Consensus 87 ~ia~d~~g~~L~~~~~-~--g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~---gl~~id 160 (393)
++++++||+.|++... + ..|+.++..++. ........+.....++.++| +.|++..... .|+.++
T Consensus 194 ~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~----~~~~~~~~~~~~~~~~spDg-----~~l~~~~~~~~~~~i~~~d 264 (417)
T TIGR02800 194 SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ----REKVASFPGMNGAPAFSPDG-----SKLAVSLSKDGNPDIYVMD 264 (417)
T ss_pred cccCCCCCCEEEEEEcCCCCcEEEEEECCCCC----EEEeecCCCCccceEECCCC-----CEEEEEECCCCCccEEEEE
Confidence 3568899987765543 2 369999987764 44443333445568899988 2466553322 388888
Q ss_pred CCc--eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCC
Q 016199 161 GNS--TVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFA 237 (393)
Q Consensus 161 ~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ 237 (393)
.++ .+.+... .+ ......+.+||. |+++... .+...||.+|..+++.+.+.......
T Consensus 265 ~~~~~~~~l~~~-~~----~~~~~~~s~dg~~l~~~s~~---------------~g~~~iy~~d~~~~~~~~l~~~~~~~ 324 (417)
T TIGR02800 265 LDGKQLTRLTNG-PG----IDTEPSWSPDGKSIAFTSDR---------------GGSPQIYMMDADGGEVRRLTFRGGYN 324 (417)
T ss_pred CCCCCEEECCCC-CC----CCCCEEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEeecCCCCc
Confidence 765 3333211 11 112446778884 6555311 12347999999888776665444556
Q ss_pred CcEEEcCCCCEEEEEeCCC--CeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEE
Q 016199 238 NGVVLSPDQTHLVYCETSM--RRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYL 295 (393)
Q Consensus 238 ngi~~s~dg~~l~v~~~~~--~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lw 295 (393)
...++++||+.++++.... .+|+.+++.+. ..+.+.. ........+.++|+..
T Consensus 325 ~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~---~~~~l~~--~~~~~~p~~spdg~~l 379 (417)
T TIGR02800 325 ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG---GERVLTD--TGLDESPSFAPNGRMI 379 (417)
T ss_pred cCeEECCCCCEEEEEEccCCceEEEEEeCCCC---CeEEccC--CCCCCCceECCCCCEE
Confidence 6788999999888877543 37888887542 2222221 1123345678888733
No 58
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.40 E-value=0.0004 Score=67.01 Aligned_cols=199 Identities=16% Similarity=0.135 Sum_probs=114.2
Q ss_pred CCCceEEEecCCCEEEEEec--CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceE--E
Q 016199 83 KGPEDLLYDAHSKLIYTGCE--DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLL--K 158 (393)
Q Consensus 83 ~~Pe~ia~d~~g~~L~~~~~--~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~--~ 158 (393)
..|+.+++++||+.||+... +..|-.+|...++ +..-...++.+......+++ +...| .++... .
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~k----vv~ei~vp~~~~vy~t~e~~------~~~~~-~Dg~~~~v~ 173 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKA----FVRMMDVPDCYHIFPTANDT------FFMHC-RDGSLAKVG 173 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCc----EEEEEeCCCCcEEEEecCCc------cEEEe-ecCceEEEE
Confidence 44558999999999999874 5689999988776 44433444444555554444 44333 223333 3
Q ss_pred EeCCc-eEEEeecc-CC--cc-ccccccEEEcC-CCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE--
Q 016199 159 ISGNS-TVLLTDEA-EG--QK-FKLTDGVDVAD-DGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV-- 229 (393)
Q Consensus 159 id~~g-~~~l~~~~-~g--~~-~~~~~~l~~d~-dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~-- 229 (393)
++.+| ...-.... .+ .+ +..+ .+.+ +|. +|++. .|.|+.+|..+.....
T Consensus 174 ~d~~g~~~~~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~-------------------eG~V~~id~~~~~~~~~~ 231 (352)
T TIGR02658 174 YGTKGNPKIKPTEVFHPEDEYLINHP---AYSNKSGRLVWPTY-------------------TGKIFQIDLSSGDAKFLP 231 (352)
T ss_pred ecCCCceEEeeeeeecCCccccccCC---ceEcCCCcEEEEec-------------------CCeEEEEecCCCcceecc
Confidence 34444 11111111 11 11 1222 2233 664 55552 3789999954332221
Q ss_pred ----Eec----CccCCCc---EEEcCCCCEEEEEe---------CCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEEC
Q 016199 230 ----LVS----DLYFANG---VVLSPDQTHLVYCE---------TSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYD 289 (393)
Q Consensus 230 ----~~~----~l~~~ng---i~~s~dg~~l~v~~---------~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d 289 (393)
+.. .-..|-| +++++|++.+||.. ...+.|+.+|... ++....+ .....|.+++++
T Consensus 232 ~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t---~kvi~~i-~vG~~~~~iavS 307 (352)
T TIGR02658 232 AIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT---GKRLRKI-ELGHEIDSINVS 307 (352)
T ss_pred eeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC---CeEEEEE-eCCCceeeEEEC
Confidence 111 1234555 99999999999953 2236899999743 2222222 123358899999
Q ss_pred CCCC-EEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEe
Q 016199 290 GEGH-YLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHY 351 (393)
Q Consensus 290 ~~G~-lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~ 351 (393)
+||+ +.+++.... +.|..+|. .++.+..+
T Consensus 308 ~Dgkp~lyvtn~~s---------------------------------~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 308 QDAKPLLYALSTGD---------------------------------KTLYIFDAETGKELSSV 338 (352)
T ss_pred CCCCeEEEEeCCCC---------------------------------CcEEEEECcCCeEEeee
Confidence 9999 555555331 45888886 57788777
No 59
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=98.38 E-value=0.00042 Score=62.95 Aligned_cols=198 Identities=13% Similarity=0.131 Sum_probs=125.9
Q ss_pred cCceEEecCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEe
Q 016199 72 QGSEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVAD 151 (393)
Q Consensus 72 ~~~~~l~~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~ 151 (393)
-.+++...|.-..-++++..+||+..+.++.|+.+..||..+++ ....+........++++++|. +-+|..
T Consensus 53 G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~---~t~~f~GH~~dVlsva~s~dn------~qivSG 123 (315)
T KOG0279|consen 53 GVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGE---STRRFVGHTKDVLSVAFSTDN------RQIVSG 123 (315)
T ss_pred CceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCc---EEEEEEecCCceEEEEecCCC------ceeecC
Confidence 33444445544556668899999988888999999999998754 144555455678999999998 666654
Q ss_pred C-CCceEEEeCCceEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE
Q 016199 152 A-YKGLLKISGNSTVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV 229 (393)
Q Consensus 152 ~-~~gl~~id~~g~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~ 229 (393)
. +.-|..++.-|...+. ..++..-..+..+.+.|+. +.++..++. .+.|-.+|..+-++..
T Consensus 124 SrDkTiklwnt~g~ck~t-~~~~~~~~WVscvrfsP~~~~p~Ivs~s~----------------DktvKvWnl~~~~l~~ 186 (315)
T KOG0279|consen 124 SRDKTIKLWNTLGVCKYT-IHEDSHREWVSCVRFSPNESNPIIVSASW----------------DKTVKVWNLRNCQLRT 186 (315)
T ss_pred CCcceeeeeeecccEEEE-EecCCCcCcEEEEEEcCCCCCcEEEEccC----------------CceEEEEccCCcchhh
Confidence 4 4456677765511111 1111113567788999975 666655433 4567778876655433
Q ss_pred -EecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecC
Q 016199 230 -LVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATE 301 (393)
Q Consensus 230 -~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~ 301 (393)
+.......|.++++|||. +..+.-..+.++.++++..+. ...+- . ...-+.+++.++ ++|++....
T Consensus 187 ~~~gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~k~--lysl~-a-~~~v~sl~fspn-rywL~~at~ 253 (315)
T KOG0279|consen 187 TFIGHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNEGKN--LYSLE-A-FDIVNSLCFSPN-RYWLCAATA 253 (315)
T ss_pred ccccccccEEEEEECCCCC-EEecCCCCceEEEEEccCCce--eEecc-C-CCeEeeEEecCC-ceeEeeccC
Confidence 233456678999999994 666666778999999864321 11111 1 112356788764 688876544
No 60
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.38 E-value=0.00018 Score=71.93 Aligned_cols=175 Identities=14% Similarity=0.110 Sum_probs=103.5
Q ss_pred ceEEEecCCCEEEEEec-C--CeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCc---eEEE
Q 016199 86 EDLLYDAHSKLIYTGCE-D--GWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKG---LLKI 159 (393)
Q Consensus 86 e~ia~d~~g~~L~~~~~-~--g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g---l~~i 159 (393)
.+++++|||+.|...+. + ..|+.++..++. .+.+....+.-...++.+|| +.|+++....| |+.+
T Consensus 207 ~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~----~~~l~~~~g~~~~~~wSPDG-----~~La~~~~~~g~~~Iy~~ 277 (429)
T PRK01742 207 MSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGA----RKVVASFRGHNGAPAFSPDG-----SRLAFASSKDGVLNIYVM 277 (429)
T ss_pred ccceEcCCCCEEEEEEecCCCcEEEEEeCCCCc----eEEEecCCCccCceeECCCC-----CEEEEEEecCCcEEEEEE
Confidence 45789999986654433 2 369999987664 33333222333467899999 24555433333 7778
Q ss_pred eCCc--eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccC
Q 016199 160 SGNS--TVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYF 236 (393)
Q Consensus 160 d~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~ 236 (393)
|.++ .+.+... . .......+++||. |+++... .+.-.||.++..++..+.+ ....
T Consensus 278 d~~~~~~~~lt~~-~----~~~~~~~wSpDG~~i~f~s~~---------------~g~~~I~~~~~~~~~~~~l-~~~~- 335 (429)
T PRK01742 278 GANGGTPSQLTSG-A----GNNTEPSWSPDGQSILFTSDR---------------SGSPQVYRMSASGGGASLV-GGRG- 335 (429)
T ss_pred ECCCCCeEeeccC-C----CCcCCEEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEEe-cCCC-
Confidence 8765 3333221 1 1234678999995 6666311 2234788888876665544 2222
Q ss_pred CCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199 237 ANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA 299 (393)
Q Consensus 237 ~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~ 299 (393)
...+++|||+.+++... .+++++++.+. ..+.+.... .-....++++|++.+...
T Consensus 336 -~~~~~SpDG~~ia~~~~--~~i~~~Dl~~g---~~~~lt~~~--~~~~~~~sPdG~~i~~~s 390 (429)
T PRK01742 336 -YSAQISADGKTLVMING--DNVVKQDLTSG---STEVLSSTF--LDESPSISPNGIMIIYSS 390 (429)
T ss_pred -CCccCCCCCCEEEEEcC--CCEEEEECCCC---CeEEecCCC--CCCCceECCCCCEEEEEE
Confidence 34678999998887754 67888887532 222222111 123467899998665544
No 61
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=98.35 E-value=5.3e-06 Score=62.99 Aligned_cols=83 Identities=23% Similarity=0.375 Sum_probs=59.7
Q ss_pred ccEEEcCCCcEEEEeCCCc-cchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCe
Q 016199 180 DGVDVADDGMIYFTDASNK-YYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRR 258 (393)
Q Consensus 180 ~~l~~d~dG~l~~td~~~~-~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~r 258 (393)
|+|+.-....+|+|+...- ..+.. +++..-+...+.|..||++ +.+.+++++.+||||++++|++.|||++...+.
T Consensus 1 NDIvavG~~sFy~TNDhyf~~~~l~-~lE~~l~~~~~~Vvyyd~~--~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~ 77 (86)
T PF01731_consen 1 NDIVAVGPDSFYVTNDHYFTDPFLR-LLETYLGLPWGNVVYYDGK--EVKVVASGFSFANGIAISPDKKYLYVASSLAHS 77 (86)
T ss_pred CCEEEECcCcEEEECchhhCcHHHH-HHHHHhcCCCceEEEEeCC--EeEEeeccCCCCceEEEcCCCCEEEEEeccCCe
Confidence 3555545557888854221 11111 1233334456789999974 677889999999999999999999999999999
Q ss_pred EEEEEec
Q 016199 259 CRKFYIK 265 (393)
Q Consensus 259 i~~~~~~ 265 (393)
|..|..+
T Consensus 78 I~vy~~~ 84 (86)
T PF01731_consen 78 IHVYKRH 84 (86)
T ss_pred EEEEEec
Confidence 9999864
No 62
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.30 E-value=0.0013 Score=65.26 Aligned_cols=162 Identities=10% Similarity=0.090 Sum_probs=91.8
Q ss_pred eEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC---CceEEEeCCc--eEEEeeccCCcccccc
Q 016199 105 WIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY---KGLLKISGNS--TVLLTDEAEGQKFKLT 179 (393)
Q Consensus 105 ~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~---~gl~~id~~g--~~~l~~~~~g~~~~~~ 179 (393)
.|+..+.++.. .+.+..........++.++| +.|+++... ..|+.++.++ ...+. ...+. .
T Consensus 171 ~l~~~d~~g~~----~~~l~~~~~~~~~p~~Spdg-----~~la~~~~~~~~~~i~v~d~~~g~~~~~~-~~~~~----~ 236 (417)
T TIGR02800 171 ELQVADYDGAN----PQTITRSREPILSPAWSPDG-----QKLAYVSFESGKPEIYVQDLATGQREKVA-SFPGM----N 236 (417)
T ss_pred eEEEEcCCCCC----CEEeecCCCceecccCCCCC-----CEEEEEEcCCCCcEEEEEECCCCCEEEee-cCCCC----c
Confidence 47777765543 34443333335567788888 245444332 2377888654 33332 22221 2
Q ss_pred ccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCC--C
Q 016199 180 DGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETS--M 256 (393)
Q Consensus 180 ~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~--~ 256 (393)
..+.+.+|| .|+++... .....||.+|..++..+.+..........++++||+.++++... .
T Consensus 237 ~~~~~spDg~~l~~~~~~---------------~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~ 301 (417)
T TIGR02800 237 GAPAFSPDGSKLAVSLSK---------------DGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGS 301 (417)
T ss_pred cceEECCCCCEEEEEECC---------------CCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCC
Confidence 356789998 46665311 22346999999888776665433333456889999988765432 2
Q ss_pred CeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199 257 RRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA 299 (393)
Q Consensus 257 ~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~ 299 (393)
..|+.+++++.+ ...+. .........+++++|++.+.+.
T Consensus 302 ~~iy~~d~~~~~---~~~l~-~~~~~~~~~~~spdg~~i~~~~ 340 (417)
T TIGR02800 302 PQIYMMDADGGE---VRRLT-FRGGYNASPSWSPDGDLIAFVH 340 (417)
T ss_pred ceEEEEECCCCC---EEEee-cCCCCccCeEECCCCCEEEEEE
Confidence 378888876432 22222 1122334567888988554443
No 63
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=98.26 E-value=0.00022 Score=66.53 Aligned_cols=197 Identities=15% Similarity=0.196 Sum_probs=116.9
Q ss_pred cCCCceEEEecCCCEEEEEecCCeEEEEEcCCCC---Cc---ceeeeee----cC--CCceeeeEECCCCCCCCceEEEE
Q 016199 82 LKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSP---AD---SLVHNWI----NT--GGRPLGIAFANSDPDADRITMIV 149 (393)
Q Consensus 82 ~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~---~~---~~~~~~~----~~--~~~p~gl~~d~~G~~~~~~~L~v 149 (393)
+..|=+++.+++ .||+++.. .|+++....+. +. ..-.-|. .. .-..+.|++ .++ .+|+
T Consensus 48 F~r~MGl~~~~~--~l~~~t~~-qiw~f~~~~n~l~~~~~~~~~D~~yvPr~~~~TGdidiHdia~-~~~------~l~f 117 (335)
T TIGR03032 48 FPRPMGLAVSPQ--SLTLGTRY-QLWRFANVDNLLPAGQTHPGYDRLYVPRASYVTGDIDAHDLAL-GAG------RLLF 117 (335)
T ss_pred cCccceeeeeCC--eEEEEEcc-eeEEcccccccccccccCCCCCeEEeeeeeeeccCcchhheee-cCC------cEEE
Confidence 455656776654 69998865 48877322111 00 0000011 11 123578888 455 6777
Q ss_pred EeC-CCceEEEeCCc--eEEEee----ccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeC
Q 016199 150 ADA-YKGLLKISGNS--TVLLTD----EAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDP 222 (393)
Q Consensus 150 ~~~-~~gl~~id~~g--~~~l~~----~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~ 222 (393)
.++ ..-|..+++.- ...+.. ......-=+.|+++.....--|+|-.+..-....|. +....|++. +|.
T Consensus 118 VNT~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~g~p~yVTa~~~sD~~~gWR----~~~~~gG~v-idv 192 (335)
T TIGR03032 118 VNTLFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDDGEPRYVTALSQSDVADGWR----EGRRDGGCV-IDI 192 (335)
T ss_pred EECcceeEEEECCCCccccccCCccccccCccCceeecceeeeCCeEEEEEEeeccCCccccc----ccccCCeEE-EEe
Confidence 765 45577887754 222211 111111124578888654467777544321111111 123345554 676
Q ss_pred CCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCC-EEEEEecC
Q 016199 223 VTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGH-YLIALATE 301 (393)
Q Consensus 223 ~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~-lwva~~~~ 301 (393)
.++ +.+++++.+|.+-.+. || .||+++++.+++.+++.+ +|+.+..+ ..||+|.|+.+. |+ ++|++...
T Consensus 193 ~s~--evl~~GLsmPhSPRWh-dg-rLwvldsgtGev~~vD~~---~G~~e~Va-~vpG~~rGL~f~--G~llvVgmSk~ 262 (335)
T TIGR03032 193 PSG--EVVASGLSMPHSPRWY-QG-KLWLLNSGRGELGYVDPQ---AGKFQPVA-FLPGFTRGLAFA--GDFAFVGLSKL 262 (335)
T ss_pred CCC--CEEEcCccCCcCCcEe-CC-eEEEEECCCCEEEEEcCC---CCcEEEEE-ECCCCCccccee--CCEEEEEeccc
Confidence 666 4578899999998886 55 699999999999999974 35567665 789999999997 77 55788877
Q ss_pred cc
Q 016199 302 FS 303 (393)
Q Consensus 302 r~ 303 (393)
|.
T Consensus 263 R~ 264 (335)
T TIGR03032 263 RE 264 (335)
T ss_pred cC
Confidence 73
No 64
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.26 E-value=9.7e-05 Score=73.42 Aligned_cols=109 Identities=16% Similarity=0.259 Sum_probs=73.7
Q ss_pred ccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEe-------c-CccCCCcEEEcCCC-
Q 016199 176 FKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLV-------S-DLYFANGVVLSPDQ- 246 (393)
Q Consensus 176 ~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~-------~-~l~~~ngi~~s~dg- 246 (393)
+..|.+|++.+||++||+. ...|+|+++++.++..+.+. . +..-..||+++||-
T Consensus 29 L~~Pw~maflPDG~llVtE-----------------R~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~ 91 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTE-----------------RATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFM 91 (454)
T ss_pred CCCceEEEEcCCCeEEEEE-----------------ecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCcc
Confidence 4568899999999999995 23588999987665433221 1 23446789999773
Q ss_pred -----CEEEEEeCC---------CCeEEEEEecCC--CCcceeeeeccCCCC----CCeEEECCCCCEEEEEecC
Q 016199 247 -----THLVYCETS---------MRRCRKFYIKGK--NAGRVEKFIETLPGL----PDNIRYDGEGHYLIALATE 301 (393)
Q Consensus 247 -----~~l~v~~~~---------~~ri~~~~~~g~--~~~~~~~~~~~l~g~----P~~i~~d~~G~lwva~~~~ 301 (393)
+++|++-+. ..+|.||.++.. .....+.+...+|.. -..|++++||.|||++...
T Consensus 92 ~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 92 QEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred ccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 478888532 568999988632 223334444455422 2348899999999998765
No 65
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.26 E-value=0.0011 Score=66.42 Aligned_cols=178 Identities=14% Similarity=0.164 Sum_probs=101.1
Q ss_pred eEEEecCCCE---EEEEecCC--eEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCC---ceEE
Q 016199 87 DLLYDAHSKL---IYTGCEDG--WIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYK---GLLK 158 (393)
Q Consensus 87 ~ia~d~~g~~---L~~~~~~g--~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~---gl~~ 158 (393)
+.+|+|||+. +|++..+| .|+.++.+++. ...+....+.....++.+|| +.|.+..... .++.
T Consensus 189 sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~----~~~lt~~~g~~~~p~wSPDG-----~~Laf~s~~~g~~di~~ 259 (428)
T PRK01029 189 TPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPA----GKKILALQGNQLMPTFSPRK-----KLLAFISDRYGNPDLFI 259 (428)
T ss_pred cceEccCCCceEEEEEEccCCCceEEEEECCCCC----ceEeecCCCCccceEECCCC-----CEEEEEECCCCCcceeE
Confidence 3579999873 45666554 69999998776 45554444455567889999 2444432221 2443
Q ss_pred --EeCC----c-eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCC--CCeEE
Q 016199 159 --ISGN----S-TVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPV--TKETK 228 (393)
Q Consensus 159 --id~~----g-~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~--t~~~~ 228 (393)
++.+ + .+.+..... .......++|||. |+++... .+.-.||.++.. ++..+
T Consensus 260 ~~~~~~~g~~g~~~~lt~~~~----~~~~~p~wSPDG~~Laf~s~~---------------~g~~~ly~~~~~~~g~~~~ 320 (428)
T PRK01029 260 QSFSLETGAIGKPRRLLNEAF----GTQGNPSFSPDGTRLVFVSNK---------------DGRPRIYIMQIDPEGQSPR 320 (428)
T ss_pred EEeecccCCCCcceEeecCCC----CCcCCeEECCCCCEEEEEECC---------------CCCceEEEEECcccccceE
Confidence 3322 2 222321111 1123568899995 6665311 122368888754 23344
Q ss_pred EEecCccCCCcEEEcCCCCEEEEEeCC--CCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEE
Q 016199 229 VLVSDLYFANGVVLSPDQTHLVYCETS--MRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLI 296 (393)
Q Consensus 229 ~~~~~l~~~ngi~~s~dg~~l~v~~~~--~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwv 296 (393)
.+..........+++|||+.|+++... ...|+.+++++. +.+.+... +....+...++||+..+
T Consensus 321 ~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g---~~~~Lt~~-~~~~~~p~wSpDG~~L~ 386 (428)
T PRK01029 321 LLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG---RDYQLTTS-PENKESPSWAIDSLHLV 386 (428)
T ss_pred EeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCC---CeEEccCC-CCCccceEECCCCCEEE
Confidence 443333344567899999988877543 347999998643 23333322 23345677888988433
No 66
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.24 E-value=0.0025 Score=62.47 Aligned_cols=218 Identities=14% Similarity=0.153 Sum_probs=115.3
Q ss_pred EEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCc-eeeeEECCCCCCCCceEEEEEeCCCceEEEeCC-ceE
Q 016199 88 LLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGR-PLGIAFANSDPDADRITMIVADAYKGLLKISGN-STV 165 (393)
Q Consensus 88 ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~-p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~-g~~ 165 (393)
++++ ++.+|+++.+|.|+.++..+++ ...-...... ..+.+.+ ++ ++|+++..+.++.+|.+ |..
T Consensus 61 p~v~--~~~v~v~~~~g~v~a~d~~tG~----~~W~~~~~~~~~~~p~v~-~~------~v~v~~~~g~l~ald~~tG~~ 127 (377)
T TIGR03300 61 PAVA--GGKVYAADADGTVVALDAETGK----RLWRVDLDERLSGGVGAD-GG------LVFVGTEKGEVIALDAEDGKE 127 (377)
T ss_pred eEEE--CCEEEEECCCCeEEEEEccCCc----EeeeecCCCCcccceEEc-CC------EEEEEcCCCEEEEEECCCCcE
Confidence 4444 3469999999999999987664 2211122221 1233444 56 89999777779999974 533
Q ss_pred EEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec-Ccc-----CCCc
Q 016199 166 LLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS-DLY-----FANG 239 (393)
Q Consensus 166 ~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~-~l~-----~~ng 239 (393)
.......+.... ...+ .++.+|+.. ..+.|+.+|+++|+..-... ... ....
T Consensus 128 ~W~~~~~~~~~~---~p~v-~~~~v~v~~------------------~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~s 185 (377)
T TIGR03300 128 LWRAKLSSEVLS---PPLV-ANGLVVVRT------------------NDGRLTALDAATGERLWTYSRVTPALTLRGSAS 185 (377)
T ss_pred eeeeccCceeec---CCEE-ECCEEEEEC------------------CCCeEEEEEcCCCceeeEEccCCCceeecCCCC
Confidence 332222222111 1122 256777763 35679999998776432111 100 0011
Q ss_pred EEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccC--C-CC---------CCeEEECCCCCEEEEEecCcchhhh
Q 016199 240 VVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETL--P-GL---------PDNIRYDGEGHYLIALATEFSTYWD 307 (393)
Q Consensus 240 i~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l--~-g~---------P~~i~~d~~G~lwva~~~~r~~~~~ 307 (393)
..+ .++ .+|+ ....++++.+++.. ++. .+.... + +. .....+ .++.+|++...
T Consensus 186 p~~-~~~-~v~~-~~~~g~v~ald~~t---G~~-~W~~~~~~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~------- 250 (377)
T TIGR03300 186 PVI-ADG-GVLV-GFAGGKLVALDLQT---GQP-LWEQRVALPKGRTELERLVDVDGDPVV-DGGQVYAVSYQ------- 250 (377)
T ss_pred CEE-ECC-EEEE-ECCCCEEEEEEccC---CCE-eeeeccccCCCCCchhhhhccCCccEE-ECCEEEEEEcC-------
Confidence 122 233 5555 44567899998742 211 111010 0 00 001112 24567776543
Q ss_pred hhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCCCCccEEEEEeCCEEEEEecCCCeEEEEeCCC
Q 016199 308 LAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDVNQ 386 (393)
Q Consensus 308 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~ 386 (393)
+.++.+|. +|+++........ ......++++|+++ ....+..+|.+.
T Consensus 251 ----------------------------g~l~a~d~~tG~~~W~~~~~~~---~~p~~~~~~vyv~~-~~G~l~~~d~~t 298 (377)
T TIGR03300 251 ----------------------------GRVAALDLRSGRVLWKRDASSY---QGPAVDDNRLYVTD-ADGVVVALDRRS 298 (377)
T ss_pred ----------------------------CEEEEEECCCCcEEEeeccCCc---cCceEeCCEEEEEC-CCCeEEEEECCC
Confidence 46888886 5777665542221 22234678999986 445788888754
Q ss_pred C
Q 016199 387 H 387 (393)
Q Consensus 387 ~ 387 (393)
.
T Consensus 299 G 299 (377)
T TIGR03300 299 G 299 (377)
T ss_pred C
Confidence 3
No 67
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.23 E-value=0.0035 Score=62.50 Aligned_cols=159 Identities=16% Similarity=0.136 Sum_probs=89.9
Q ss_pred eEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceE-EEEEeCC---CceEEEeCCc--eEEEeeccCCccccc
Q 016199 105 WIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRIT-MIVADAY---KGLLKISGNS--TVLLTDEAEGQKFKL 178 (393)
Q Consensus 105 ~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~-L~v~~~~---~gl~~id~~g--~~~l~~~~~g~~~~~ 178 (393)
+|+..|.++.. ...+.. .+.-....+.++| ++ +++.... ..|+.+|..+ .+.+.. ..+..
T Consensus 170 ~l~~~d~dg~~----~~~~~~-~~~~~~p~wSpDG-----~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~--- 235 (419)
T PRK04043 170 NIVLADYTLTY----QKVIVK-GGLNIFPKWANKE-----QTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGML--- 235 (419)
T ss_pred eEEEECCCCCc----eeEEcc-CCCeEeEEECCCC-----CcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcE---
Confidence 45555555443 232322 2223456778888 22 5554333 2388888765 444432 22321
Q ss_pred cccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCC-
Q 016199 179 TDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSM- 256 (393)
Q Consensus 179 ~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~- 256 (393)
....++||| .+.++... .+...||.+|.++++.+.+...-.......++|||+.++++....
T Consensus 236 -~~~~~SPDG~~la~~~~~---------------~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g 299 (419)
T PRK04043 236 -VVSDVSKDGSKLLLTMAP---------------KGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLG 299 (419)
T ss_pred -EeeEECCCCCEEEEEEcc---------------CCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCC
Confidence 134588999 57666321 234579999998888777654322223457999999887775432
Q ss_pred -CeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199 257 -RRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA 299 (393)
Q Consensus 257 -~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~ 299 (393)
..|+++++++. +.+.+... +. .+..+++||+..+-..
T Consensus 300 ~~~Iy~~dl~~g---~~~rlt~~--g~-~~~~~SPDG~~Ia~~~ 337 (419)
T PRK04043 300 YPNIFMKKLNSG---SVEQVVFH--GK-NNSSVSTYKNYIVYSS 337 (419)
T ss_pred CceEEEEECCCC---CeEeCccC--CC-cCceECCCCCEEEEEE
Confidence 37899988653 23222211 11 1357899998554433
No 68
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.19 E-value=0.00025 Score=72.21 Aligned_cols=176 Identities=11% Similarity=0.055 Sum_probs=101.9
Q ss_pred EecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeC--CCc--eEEEeCCc-
Q 016199 90 YDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADA--YKG--LLKISGNS- 163 (393)
Q Consensus 90 ~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~--~~g--l~~id~~g- 163 (393)
+++||+.++.... .+.+..+|.++.+ +..-...+++|..+.++++| +.+|++.. ..| +..++.+.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etme----V~~qV~Vdgnpd~v~~spdG-----k~afvTsyNsE~G~tl~em~a~e~ 270 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETME----VAWQVMVDGNLDNVDTDYDG-----KYAFSTCYNSEEGVTLAEMMAAER 270 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccce----EEEEEEeCCCcccceECCCC-----CEEEEeccCcccCcceeeeccccC
Confidence 4455554433322 3345566665433 32223456789999999998 25677632 222 33343321
Q ss_pred eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCC-----CeEEEEecCccCC
Q 016199 164 TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVT-----KETKVLVSDLYFA 237 (393)
Q Consensus 164 ~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t-----~~~~~~~~~l~~~ 237 (393)
-..+.....+. -+..++| ..|+. .++|-.+|..+ .++..+..--..|
T Consensus 271 d~~vvfni~~i-------ea~vkdGK~~~V~--------------------gn~V~VID~~t~~~~~~~v~~yIPVGKsP 323 (635)
T PRK02888 271 DWVVVFNIARI-------EEAVKAGKFKTIG--------------------GSKVPVVDGRKAANAGSALTRYVPVPKNP 323 (635)
T ss_pred ceEEEEchHHH-------HHhhhCCCEEEEC--------------------CCEEEEEECCccccCCcceEEEEECCCCc
Confidence 11111111110 0223455 34442 24688899876 3444444455779
Q ss_pred CcEEEcCCCCEEEEEeCCCCeEEEEEecCCC------Ccceeeeecc--CCCCCCeEEECCCCCEEEEEecC
Q 016199 238 NGVVLSPDQTHLVYCETSMRRCRKFYIKGKN------AGRVEKFIET--LPGLPDNIRYDGEGHYLIALATE 301 (393)
Q Consensus 238 ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~------~~~~~~~~~~--l~g~P~~i~~d~~G~lwva~~~~ 301 (393)
+|++++|||+++|+++-....+..++++..+ ..-......+ +.--|--.++|++|+.|.++...
T Consensus 324 HGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~d 395 (635)
T PRK02888 324 HGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLD 395 (635)
T ss_pred cceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeec
Confidence 9999999999999999999999999986422 0001111111 22247788999999999998755
No 69
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=98.19 E-value=0.0027 Score=61.90 Aligned_cols=175 Identities=14% Similarity=0.124 Sum_probs=95.4
Q ss_pred ceEEecCccCCCceEEEecCCCEEEEEecC-CeEEEEEcCCCCCcc--ee-eeeec----------------CCCceeee
Q 016199 74 SEKVGYGVLKGPEDLLYDAHSKLIYTGCED-GWIKRVTLNDSPADS--LV-HNWIN----------------TGGRPLGI 133 (393)
Q Consensus 74 ~~~l~~g~~~~Pe~ia~d~~g~~L~~~~~~-g~I~~~~~~~~~~~~--~~-~~~~~----------------~~~~p~gl 133 (393)
.+.+..| +..|-.++..|+| .+.+.... |.+..+......... .. ..+.. ....+.++
T Consensus 59 ~~~~a~g-Le~p~~~~~lP~G-~~~v~er~~G~l~~i~~g~~~~~~~~~~~~~~~~~~~Gll~~al~~~fa~~~~~~~~~ 136 (399)
T COG2133 59 VEVVAQG-LEHPWGLARLPDG-VLLVTERPTGRLRLISDGGSASPPVSTVPIVLLRGQGGLLDIALSPDFAQGRLVYFGI 136 (399)
T ss_pred ccccccc-ccCchhheecCCc-eEEEEccCCccEEEecCCCcccccccccceEEeccCCCccceEecccccccceeeeEE
Confidence 4555566 7889999999999 56666655 666555422211000 00 00101 01124455
Q ss_pred EECCCCCCCCceEEEEEeCCCceEEEeCC-c----eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhh-----
Q 016199 134 AFANSDPDADRITMIVADAYKGLLKISGN-S----TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLRE----- 203 (393)
Q Consensus 134 ~~d~~G~~~~~~~L~v~~~~~gl~~id~~-g----~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~----- 203 (393)
++-.+ .+|+++ ..++.+++.. . ..++.....+....+...|+++|||.||++..+.......
T Consensus 137 a~~~~-------~~~~~n-~~~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~pDG~Lyvs~G~~~~~~~aq~~~~ 208 (399)
T COG2133 137 SEPGG-------GLYVAN-RVAIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGPDGKLYVTTGSNGDPALAQDNVS 208 (399)
T ss_pred EeecC-------CceEEE-EEEEEEcCCCccccccccEEeecCCCCCCcCcccEEECCCCcEEEEeCCCCCcccccCccc
Confidence 54332 355553 3445566511 1 1222233333223456679999999999986544111000
Q ss_pred heehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCeE
Q 016199 204 YILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRC 259 (393)
Q Consensus 204 ~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri 259 (393)
..-.+++. ...+++..|+.+...+.+..++..|.|++++|....||++|.....+
T Consensus 209 ~~Gk~~r~-~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~ 263 (399)
T COG2133 209 LAGKVLRI-DRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGPDAL 263 (399)
T ss_pred cccceeee-ccCcccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCCCcc
Confidence 00001111 12235566666666677788899999999999966899999776333
No 70
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=98.16 E-value=0.0027 Score=57.87 Aligned_cols=228 Identities=11% Similarity=0.173 Sum_probs=142.7
Q ss_pred CEEEEEecCCeEEEEEcCCCCC--cceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEE-EeCCc---eEEEe
Q 016199 95 KLIYTGCEDGWIKRVTLNDSPA--DSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLK-ISGNS---TVLLT 168 (393)
Q Consensus 95 ~~L~~~~~~g~I~~~~~~~~~~--~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~-id~~g---~~~l~ 168 (393)
+.|+-+++|..++.++...... ...++.+........+++..++| ++.+.....+..+ .|..+ .+.+.
T Consensus 29 ~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg------~~alS~swD~~lrlWDl~~g~~t~~f~ 102 (315)
T KOG0279|consen 29 DILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDG------NFALSASWDGTLRLWDLATGESTRRFV 102 (315)
T ss_pred ceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCC------ceEEeccccceEEEEEecCCcEEEEEE
Confidence 3566777788888888764320 11133333223346788888999 7777766666544 57654 22232
Q ss_pred eccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC--ccCCCcEEEcCCC
Q 016199 169 DEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD--LYFANGVVLSPDQ 246 (393)
Q Consensus 169 ~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~--l~~~ngi~~s~dg 246 (393)
|.. .-+-++++++|.+-.++- +....+..||..+...-...++ -...+.+.|+|..
T Consensus 103 ----GH~-~dVlsva~s~dn~qivSG-----------------SrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~ 160 (315)
T KOG0279|consen 103 ----GHT-KDVLSVAFSTDNRQIVSG-----------------SRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNE 160 (315)
T ss_pred ----ecC-CceEEEEecCCCceeecC-----------------CCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCC
Confidence 221 234578999999877773 3445688888776544444444 4567899999996
Q ss_pred -CEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhh
Q 016199 247 -THLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRY 325 (393)
Q Consensus 247 -~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~ 325 (393)
+-++++......+-.+++++-+. ...|. +..++-+-+++++||.+.......
T Consensus 161 ~~p~Ivs~s~DktvKvWnl~~~~l--~~~~~-gh~~~v~t~~vSpDGslcasGgkd------------------------ 213 (315)
T KOG0279|consen 161 SNPIIVSASWDKTVKVWNLRNCQL--RTTFI-GHSGYVNTVTVSPDGSLCASGGKD------------------------ 213 (315)
T ss_pred CCcEEEEccCCceEEEEccCCcch--hhccc-cccccEEEEEECCCCCEEecCCCC------------------------
Confidence 45667777777788888865321 12233 334556678899999988763322
Q ss_pred hCCCCCCCCCceEEEECC-CCcEEEEeeCCCCCccEEEEEeCCEEEEEecCCCeEEEEeCCCCCC
Q 016199 326 LGMPPMGKSSSGVFIVDL-DGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDVNQHPA 389 (393)
Q Consensus 326 ~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~~~~ 389 (393)
+.++..|. +|+-+.++.. ...+....-..++.|+.-..+..|-..+++....
T Consensus 214 ----------g~~~LwdL~~~k~lysl~a--~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~ 266 (315)
T KOG0279|consen 214 ----------GEAMLWDLNEGKNLYSLEA--FDIVNSLCFSPNRYWLCAATATSIKIWDLESKAV 266 (315)
T ss_pred ----------ceEEEEEccCCceeEeccC--CCeEeeEEecCCceeEeeccCCceEEEeccchhh
Confidence 34555554 5666655543 3334444556688999988888888888765443
No 71
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=98.16 E-value=3e-05 Score=74.80 Aligned_cols=161 Identities=14% Similarity=0.171 Sum_probs=95.0
Q ss_pred cccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeE-EEEec-------CccCCCcEEEcCC---
Q 016199 177 KLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKET-KVLVS-------DLYFANGVVLSPD--- 245 (393)
Q Consensus 177 ~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~-~~~~~-------~l~~~ngi~~s~d--- 245 (393)
..|.+|++.|||++|+++ ..|+|++++.+ +.. ..+.. +.....|++++|+
T Consensus 2 ~~P~~~a~~pdG~l~v~e------------------~~G~i~~~~~~-g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~ 62 (331)
T PF07995_consen 2 NNPRSMAFLPDGRLLVAE------------------RSGRIWVVDKD-GSLKTPVADLPEVFADGERGLLGIAFHPDFAS 62 (331)
T ss_dssp SSEEEEEEETTSCEEEEE------------------TTTEEEEEETT-TEECEEEEE-TTTBTSTTBSEEEEEE-TTCCC
T ss_pred CCceEEEEeCCCcEEEEe------------------CCceEEEEeCC-CcCcceecccccccccccCCcccceeccccCC
Confidence 346789999999999995 36899999954 443 22211 2344578999985
Q ss_pred CCEEEEEeCCC--------CeEEEEEecCC--CCcceeeeeccCCC-----C-CCeEEECCCCCEEEEEecCcchhhhhh
Q 016199 246 QTHLVYCETSM--------RRCRKFYIKGK--NAGRVEKFIETLPG-----L-PDNIRYDGEGHYLIALATEFSTYWDLA 309 (393)
Q Consensus 246 g~~l~v~~~~~--------~ri~~~~~~g~--~~~~~~~~~~~l~g-----~-P~~i~~d~~G~lwva~~~~r~~~~~~~ 309 (393)
+..+|+..+.. .+|.||.++.. .....+.++..+|. + ...|++++||.|||+.....+. -.
T Consensus 63 n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~---~~ 139 (331)
T PF07995_consen 63 NGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGND---DN 139 (331)
T ss_dssp C-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTG---GG
T ss_pred CCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCc---cc
Confidence 35888888743 58999998754 23334444444343 1 1348999999999998765430 00
Q ss_pred hcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEE-------------EeeCCCCCccEEEEEeC-CEEEEEecC
Q 016199 310 YRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIA-------------HYYDPEMSLISSAIKIG-DHLYCGSVH 375 (393)
Q Consensus 310 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~-------------~~~d~~~~~~~~~~~~~-g~Lyigs~~ 375 (393)
+ .-.....+.|++++++|++.. .+...--+..-...... |.||++...
T Consensus 140 ~------------------~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G 201 (331)
T PF07995_consen 140 A------------------QDPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNG 201 (331)
T ss_dssp G------------------CSTTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-
T ss_pred c------------------cccccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccC
Confidence 1 111223477999999987421 11111112223334455 899998765
Q ss_pred CC
Q 016199 376 HR 377 (393)
Q Consensus 376 ~~ 377 (393)
.+
T Consensus 202 ~~ 203 (331)
T PF07995_consen 202 PD 203 (331)
T ss_dssp SS
T ss_pred CC
Confidence 44
No 72
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.15 E-value=0.0017 Score=65.03 Aligned_cols=137 Identities=12% Similarity=0.131 Sum_probs=79.6
Q ss_pred ceeeeEECCCCCCCCceEEEEEeCCC---ceEEEeCCc--eEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchh
Q 016199 129 RPLGIAFANSDPDADRITMIVADAYK---GLLKISGNS--TVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLR 202 (393)
Q Consensus 129 ~p~gl~~d~~G~~~~~~~L~v~~~~~---gl~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~ 202 (393)
.....++.++| +.|..+.... .|+.+|.++ .+.+. ...+. ...++++|||+ |+++...
T Consensus 205 ~v~~p~wSPDG-----~~la~~s~~~~~~~i~i~dl~tg~~~~l~-~~~g~----~~~~~wSPDG~~La~~~~~------ 268 (429)
T PRK01742 205 PLMSPAWSPDG-----SKLAYVSFENKKSQLVVHDLRSGARKVVA-SFRGH----NGAPAFSPDGSRLAFASSK------ 268 (429)
T ss_pred ccccceEcCCC-----CEEEEEEecCCCcEEEEEeCCCCceEEEe-cCCCc----cCceeECCCCCEEEEEEec------
Confidence 35678889998 2343332222 388888755 33332 22221 23578999995 5554210
Q ss_pred hheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCC--eEEEEEecCCCCcceeeeeccCC
Q 016199 203 EYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMR--RCRKFYIKGKNAGRVEKFIETLP 280 (393)
Q Consensus 203 ~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~--ri~~~~~~g~~~~~~~~~~~~l~ 280 (393)
.+.-.||.+|..+++.+.+..........+++|||+.++++....+ +|+.++..+. ..+.+ .. .
T Consensus 269 ---------~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~---~~~~l-~~-~ 334 (429)
T PRK01742 269 ---------DGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG---GASLV-GG-R 334 (429)
T ss_pred ---------CCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC---CeEEe-cC-C
Confidence 2233589999988887776555445567899999998877654333 5666665432 12222 11 1
Q ss_pred CCCCeEEECCCCCEEEE
Q 016199 281 GLPDNIRYDGEGHYLIA 297 (393)
Q Consensus 281 g~P~~i~~d~~G~lwva 297 (393)
+ .+..++++|+..+.
T Consensus 335 ~--~~~~~SpDG~~ia~ 349 (429)
T PRK01742 335 G--YSAQISADGKTLVM 349 (429)
T ss_pred C--CCccCCCCCCEEEE
Confidence 2 24567888885443
No 73
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.13 E-value=0.0021 Score=63.57 Aligned_cols=214 Identities=15% Similarity=0.181 Sum_probs=114.7
Q ss_pred EEEEEecCCeEEEEEcCCCCCcceeeeeecCCCce-------eeeEECCCCCCCCceEEEEEeCCCceEEEeCC-ceEEE
Q 016199 96 LIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRP-------LGIAFANSDPDADRITMIVADAYKGLLKISGN-STVLL 167 (393)
Q Consensus 96 ~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p-------~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~-g~~~l 167 (393)
.+|+++.++.|+.+|.++++ ....... ..| ..-+.. +| .++++...+.++.++.+ |....
T Consensus 162 ~v~v~~~~g~l~ald~~tG~----~~W~~~~-~~~~~~~~~~~sP~v~-~~------~v~~~~~~g~v~a~d~~~G~~~W 229 (394)
T PRK11138 162 LVLVHTSNGMLQALNESDGA----VKWTVNL-DVPSLTLRGESAPATA-FG------GAIVGGDNGRVSAVLMEQGQLIW 229 (394)
T ss_pred EEEEECCCCEEEEEEccCCC----EeeeecC-CCCcccccCCCCCEEE-CC------EEEEEcCCCEEEEEEccCChhhh
Confidence 68888888999999988765 2211111 111 011122 45 78888766668888764 32222
Q ss_pred eeccC----CccccccccEEE---cCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcE
Q 016199 168 TDEAE----GQKFKLTDGVDV---ADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGV 240 (393)
Q Consensus 168 ~~~~~----g~~~~~~~~l~~---d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi 240 (393)
..... ...+.....+.. -.+|.+|+++ ..|.++++|+.+|+..= ...+..+..+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~------------------~~g~l~ald~~tG~~~W-~~~~~~~~~~ 290 (394)
T PRK11138 230 QQRISQPTGATEIDRLVDVDTTPVVVGGVVYALA------------------YNGNLVALDLRSGQIVW-KREYGSVNDF 290 (394)
T ss_pred eeccccCCCccchhcccccCCCcEEECCEEEEEE------------------cCCeEEEEECCCCCEEE-eecCCCccCc
Confidence 11111 000000001111 1267888874 34689999998886421 1122222333
Q ss_pred EEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeecc-CCC-CCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhh
Q 016199 241 VLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIET-LPG-LPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKV 318 (393)
Q Consensus 241 ~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~-l~g-~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~ 318 (393)
.+ ++..+|+.. .+++++.++.+. ++ +.+... +.+ .-...++ .+|.+|++...
T Consensus 291 ~~--~~~~vy~~~-~~g~l~ald~~t---G~-~~W~~~~~~~~~~~sp~v-~~g~l~v~~~~------------------ 344 (394)
T PRK11138 291 AV--DGGRIYLVD-QNDRVYALDTRG---GV-ELWSQSDLLHRLLTAPVL-YNGYLVVGDSE------------------ 344 (394)
T ss_pred EE--ECCEEEEEc-CCCeEEEEECCC---Cc-EEEcccccCCCcccCCEE-ECCEEEEEeCC------------------
Confidence 33 344788876 468899999742 22 222111 111 1111222 26788887653
Q ss_pred hhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCCCCccEEEEEeCCEEEEEecCCCeEEEEeC
Q 016199 319 SGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDV 384 (393)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~~~~~ 384 (393)
+.|+.+|+ +|+++..+........+.-...+++||+++. +..|..|++
T Consensus 345 -----------------G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~~~~l~v~t~-~G~l~~~~~ 393 (394)
T PRK11138 345 -----------------GYLHWINREDGRFVAQQKVDSSGFLSEPVVADDKLLIQAR-DGTVYAITR 393 (394)
T ss_pred -----------------CEEEEEECCCCCEEEEEEcCCCcceeCCEEECCEEEEEeC-CceEEEEeC
Confidence 45888886 6888877764321112222346789999974 446777765
No 74
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.11 E-value=0.0014 Score=64.86 Aligned_cols=219 Identities=13% Similarity=0.109 Sum_probs=114.1
Q ss_pred CEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCcee-eeEECCCCCCCCceEEEEEeCCCceEEEeCC-ceEEEeeccC
Q 016199 95 KLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPL-GIAFANSDPDADRITMIVADAYKGLLKISGN-STVLLTDEAE 172 (393)
Q Consensus 95 ~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~-gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~-g~~~l~~~~~ 172 (393)
+.+|+++.+|.++.+|.++++ ........+.+. ...+ .+| .+|++...+.|+.+|.+ |.........
T Consensus 121 ~~v~v~~~~g~l~ald~~tG~----~~W~~~~~~~~~ssP~v-~~~------~v~v~~~~g~l~ald~~tG~~~W~~~~~ 189 (394)
T PRK11138 121 GKVYIGSEKGQVYALNAEDGE----VAWQTKVAGEALSRPVV-SDG------LVLVHTSNGMLQALNESDGAVKWTVNLD 189 (394)
T ss_pred CEEEEEcCCCEEEEEECCCCC----CcccccCCCceecCCEE-ECC------EEEEECCCCEEEEEEccCCCEeeeecCC
Confidence 368999889999999987764 221111122111 1122 256 89998766669999975 4333332222
Q ss_pred Cccc--cccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCC---------cEE
Q 016199 173 GQKF--KLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFAN---------GVV 241 (393)
Q Consensus 173 g~~~--~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~n---------gi~ 241 (393)
...+ .....-+++ +|.+|++ ...+.++.+|+++|+..-.. ....+. .+.
T Consensus 190 ~~~~~~~~~~sP~v~-~~~v~~~------------------~~~g~v~a~d~~~G~~~W~~-~~~~~~~~~~~~~~~~~~ 249 (394)
T PRK11138 190 VPSLTLRGESAPATA-FGGAIVG------------------GDNGRVSAVLMEQGQLIWQQ-RISQPTGATEIDRLVDVD 249 (394)
T ss_pred CCcccccCCCCCEEE-CCEEEEE------------------cCCCEEEEEEccCChhhhee-ccccCCCccchhcccccC
Confidence 1111 000111222 4567776 34567888888877532110 000010 011
Q ss_pred EcC--CCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhh
Q 016199 242 LSP--DQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVS 319 (393)
Q Consensus 242 ~s~--dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~ 319 (393)
.+| .++.+|++.. .+.++.++.+. ++ +.+..... .+..+..+ +|++|++...
T Consensus 250 ~sP~v~~~~vy~~~~-~g~l~ald~~t---G~-~~W~~~~~-~~~~~~~~-~~~vy~~~~~------------------- 303 (394)
T PRK11138 250 TTPVVVGGVVYALAY-NGNLVALDLRS---GQ-IVWKREYG-SVNDFAVD-GGRIYLVDQN------------------- 303 (394)
T ss_pred CCcEEECCEEEEEEc-CCeEEEEECCC---CC-EEEeecCC-CccCcEEE-CCEEEEEcCC-------------------
Confidence 111 2347887664 67899999742 22 22322222 22334443 5778887653
Q ss_pred hhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCCCCccEEEEEeCCEEEEEecCCCeEEEEeCCCC
Q 016199 320 GMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDVNQH 387 (393)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~~ 387 (393)
+.++.+|. +|+++...........+.....+|+||+++. ...|..+|.+..
T Consensus 304 ----------------g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~-~G~l~~ld~~tG 355 (394)
T PRK11138 304 ----------------DRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDS-EGYLHWINREDG 355 (394)
T ss_pred ----------------CeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeC-CCEEEEEECCCC
Confidence 46888886 5666554432211112222335788888864 346777776543
No 75
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.11 E-value=0.0041 Score=61.19 Aligned_cols=186 Identities=17% Similarity=0.188 Sum_probs=106.0
Q ss_pred CCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeee---cCCCceeeeEECCCCCCCCceEEEEEeCCCc-----
Q 016199 84 GPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWI---NTGGRPLGIAFANSDPDADRITMIVADAYKG----- 155 (393)
Q Consensus 84 ~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~---~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g----- 155 (393)
.-.++.+.|||.+.-+...||+++.||..+++ .+..+. ...+...+|...||+. ++.-+.++.-
T Consensus 192 FV~~VRysPDG~~Fat~gsDgki~iyDGktge---~vg~l~~~~aHkGsIfalsWsPDs~-----~~~T~SaDkt~KIWd 263 (603)
T KOG0318|consen 192 FVNCVRYSPDGSRFATAGSDGKIYIYDGKTGE---KVGELEDSDAHKGSIFALSWSPDST-----QFLTVSADKTIKIWD 263 (603)
T ss_pred ceeeEEECCCCCeEEEecCCccEEEEcCCCcc---EEEEecCCCCccccEEEEEECCCCc-----eEEEecCCceEEEEE
Confidence 34568899999854455569999999877654 133332 2346678888888761 2332222222
Q ss_pred -----------------------------eEEEeCCc-eEEEeec-------cCCccccccccEEEcCCCcEEEEeCCCc
Q 016199 156 -----------------------------LLKISGNS-TVLLTDE-------AEGQKFKLTDGVDVADDGMIYFTDASNK 198 (393)
Q Consensus 156 -----------------------------l~~id~~g-~~~l~~~-------~~g~~~~~~~~l~~d~dG~l~~td~~~~ 198 (393)
|..++.+| +..+... ..|. ...+..+++.+||.-+++
T Consensus 264 Vs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GH-nK~ITaLtv~~d~~~i~S----- 337 (603)
T KOG0318|consen 264 VSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGH-NKSITALTVSPDGKTIYS----- 337 (603)
T ss_pred eeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheeccc-ccceeEEEEcCCCCEEEe-----
Confidence 12222222 1111100 0111 133556667777643333
Q ss_pred cchhhheehhcccCCCcEEEEEeCCCCeEEEEecC--ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeee
Q 016199 199 YYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD--LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFI 276 (393)
Q Consensus 199 ~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~--l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~ 276 (393)
++..|.|..++..++..-.+... .....+++.+..+ .+ ++-.....|.+.++.+......+.+
T Consensus 338 ------------gsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~-~~-~t~g~Dd~l~~~~~~~~~~t~~~~~- 402 (603)
T KOG0318|consen 338 ------------GSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESG-EL-FTIGWDDTLRVISLKDNGYTKSEVV- 402 (603)
T ss_pred ------------eccCceEEEEecCCccccccccccccceEEEEeecCCC-cE-EEEecCCeEEEEecccCccccccee-
Confidence 24567899999877765544322 2345677776645 34 4444678999998865544443332
Q ss_pred ccCCCCCCeEEECCCCCEEEEEe
Q 016199 277 ETLPGLPDNIRYDGEGHYLIALA 299 (393)
Q Consensus 277 ~~l~g~P~~i~~d~~G~lwva~~ 299 (393)
.++..|.++++.++|.+-+...
T Consensus 403 -~lg~QP~~lav~~d~~~avv~~ 424 (603)
T KOG0318|consen 403 -KLGSQPKGLAVLSDGGTAVVAC 424 (603)
T ss_pred -ecCCCceeEEEcCCCCEEEEEe
Confidence 4566799999999987555444
No 76
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=98.11 E-value=0.00056 Score=64.56 Aligned_cols=192 Identities=15% Similarity=0.222 Sum_probs=107.4
Q ss_pred eEEEecCCCEEEEEecC-------------CeEEEEEcCCCCCcceeeeeec------CCCceeeeEECCCCCCCCceEE
Q 016199 87 DLLYDAHSKLIYTGCED-------------GWIKRVTLNDSPADSLVHNWIN------TGGRPLGIAFANSDPDADRITM 147 (393)
Q Consensus 87 ~ia~d~~g~~L~~~~~~-------------g~I~~~~~~~~~~~~~~~~~~~------~~~~p~gl~~d~~G~~~~~~~L 147 (393)
.+.+|+.| +||+-+.. .+|+.||+++.+ .++.+.- .......+++|.......+...
T Consensus 5 ~v~iD~~~-rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~---li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~a 80 (287)
T PF03022_consen 5 RVQIDECG-RLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQ---LIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFA 80 (287)
T ss_dssp EEEE-TTS-EEEEEE-CCHSSSSTTGHTS--EEEEEETTTTC---EEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEE
T ss_pred EEEEcCCC-CEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCc---EEEEEECChHHcccccccceEEEEccCCCCcceEE
Confidence 47789887 58875421 379999998775 2333321 1234567888762100011279
Q ss_pred EEEeCC-CceEEEeCCc--e-EEEeec-----------cCCccccc---cccEEEcC---CC-cEEEEeCCCccchhhhe
Q 016199 148 IVADAY-KGLLKISGNS--T-VLLTDE-----------AEGQKFKL---TDGVDVAD---DG-MIYFTDASNKYYLREYI 205 (393)
Q Consensus 148 ~v~~~~-~gl~~id~~g--~-~~l~~~-----------~~g~~~~~---~~~l~~d~---dG-~l~~td~~~~~~~~~~~ 205 (393)
||+|.. .||..+|... . +++... ..|..+.. +.+++..+ +| .||+.-.++
T Consensus 81 YItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-------- 152 (287)
T PF03022_consen 81 YITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-------- 152 (287)
T ss_dssp EEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT---------
T ss_pred EEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC--------
Confidence 999985 6799998654 2 222211 11222222 33445443 44 577775322
Q ss_pred ehhcccCCCcEEEEEeCC---C----------CeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCC-Ccc
Q 016199 206 LDIFEGKPNGRLLSFDPV---T----------KETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKN-AGR 271 (393)
Q Consensus 206 ~~~~e~~~~g~l~~~d~~---t----------~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~-~~~ 271 (393)
..+|+...+ . ..++.+........|++++++| .||+++...+.|.+++.+++- ...
T Consensus 153 ---------~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G-~ly~~~~~~~aI~~w~~~~~~~~~~ 222 (287)
T PF03022_consen 153 ---------RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNG-NLYFTDVEQNAIGCWDPDGPYTPEN 222 (287)
T ss_dssp ---------SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTT-EEEEEECCCTEEEEEETTTSB-GCC
T ss_pred ---------CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCC-cEEEecCCCCeEEEEeCCCCcCccc
Confidence 245555421 0 0122222222456899999988 899999999999999987642 223
Q ss_pred eeeeecc-C-CCCCCeEEECC--CCCEEEEEec
Q 016199 272 VEKFIET-L-PGLPDNIRYDG--EGHYLIALAT 300 (393)
Q Consensus 272 ~~~~~~~-l-~g~P~~i~~d~--~G~lwva~~~ 300 (393)
.+.++.. . --+|+++.++. +|.+|+.+..
T Consensus 223 ~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 223 FEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNR 255 (287)
T ss_dssp EEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred hheeEEcCceeeccceeeeccccCceEEEEECc
Confidence 4445422 1 24799999999 9999998763
No 77
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.10 E-value=0.00041 Score=71.27 Aligned_cols=220 Identities=16% Similarity=0.238 Sum_probs=135.6
Q ss_pred cCCeEEEEEcCCCCCcc-eeeeeec-CCCceeeeEECCCCCCCCceEEEEEeC-CCceEEEeCCc--eEEEeeccCCccc
Q 016199 102 EDGWIKRVTLNDSPADS-LVHNWIN-TGGRPLGIAFANSDPDADRITMIVADA-YKGLLKISGNS--TVLLTDEAEGQKF 176 (393)
Q Consensus 102 ~~g~I~~~~~~~~~~~~-~~~~~~~-~~~~p~gl~~d~~G~~~~~~~L~v~~~-~~gl~~id~~g--~~~l~~~~~g~~~ 176 (393)
..+.|.++..++..-.+ ..+.+.. ...-+.||.||=.. +.+|..|. +..|-+-..+| .+.+. ...+
T Consensus 997 qg~~I~~lplng~~~~K~~ak~~l~~p~~IiVGidfDC~e-----~mvyWtDv~g~SI~rasL~G~Ep~ti~----n~~L 1067 (1289)
T KOG1214|consen 997 QGQQIGYLPLNGTRLQKDAAKTLLSLPGSIIVGIDFDCRE-----RMVYWTDVAGRSISRASLEGAEPETIV----NSGL 1067 (1289)
T ss_pred ccceEEEeecCcchhchhhhhceEecccceeeeeeccccc-----ceEEEeecCCCccccccccCCCCceee----cccC
Confidence 34567777766543111 0121222 23457899998544 26777765 44566666666 22222 2234
Q ss_pred cccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCC
Q 016199 177 KLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETS 255 (393)
Q Consensus 177 ~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~ 255 (393)
..+.+|++|--+ ++|.+|+-.+ .-.+-.+|-+ .+...+.+++..|.+|.+++=++.|||++..
T Consensus 1068 ~SPEGiAVDh~~Rn~ywtDS~lD---------------~IevA~LdG~-~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWn 1131 (1289)
T KOG1214|consen 1068 ISPEGIAVDHIRRNMYWTDSVLD---------------KIEVALLDGS-ERKVLFYTDLVNPRAIVVDPIRGNLYWTDWN 1131 (1289)
T ss_pred CCccceeeeeccceeeeeccccc---------------hhheeecCCc-eeeEEEeecccCcceEEeecccCceeecccc
Confidence 568899999876 8999985321 1235556543 2334456789999999999988899999976
Q ss_pred CC--eEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCC--EEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCC
Q 016199 256 MR--RCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGH--YLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPM 331 (393)
Q Consensus 256 ~~--ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~--lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 331 (393)
+. .|-+-+++|++ .++|+...-++|+|+.+|+.-+ -||-...
T Consensus 1132 RenPkIets~mDG~N---rRilin~DigLPNGLtfdpfs~~LCWvDAGt------------------------------- 1177 (1289)
T KOG1214|consen 1132 RENPKIETSSMDGEN---RRILINTDIGLPNGLTFDPFSKLLCWVDAGT------------------------------- 1177 (1289)
T ss_pred ccCCcceeeccCCcc---ceEEeecccCCCCCceeCcccceeeEEecCC-------------------------------
Confidence 54 67788888763 5567655567999999999876 5664332
Q ss_pred CCCCceEEEECCCCcEEEEeeCCCCCccEEEEEeCCEEEEEecCCCeEEEEeCC
Q 016199 332 GKSSSGVFIVDLDGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDVN 385 (393)
Q Consensus 332 ~~~~~~v~~~d~~g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~ 385 (393)
+.+-.+.++|.--+.+... .+..-.+..+.+++|.+.+..++|..+++.
T Consensus 1178 ----~rleC~~p~g~gRR~i~~~-LqYPF~itsy~~~fY~TDWk~n~vvsv~~~ 1226 (1289)
T KOG1214|consen 1178 ----KRLECTLPDGTGRRVIQNN-LQYPFSITSYADHFYHTDWKRNGVVSVNKH 1226 (1289)
T ss_pred ----cceeEecCCCCcchhhhhc-ccCceeeeeccccceeeccccCceEEeecc
Confidence 2355666665322222211 111123444556788888888888877753
No 78
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.09 E-value=0.0019 Score=63.33 Aligned_cols=125 Identities=13% Similarity=0.087 Sum_probs=68.7
Q ss_pred CCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeec-cCCC-CCCeEEECC
Q 016199 213 PNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIE-TLPG-LPDNIRYDG 290 (393)
Q Consensus 213 ~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~-~l~g-~P~~i~~d~ 290 (393)
..|.++++|+++++..-... .......++ +++.+|+.. .+++++.++.+.. + ..+.. .+.+ .-....+ .
T Consensus 249 ~~g~l~a~d~~tG~~~W~~~-~~~~~~p~~--~~~~vyv~~-~~G~l~~~d~~tG---~-~~W~~~~~~~~~~ssp~i-~ 319 (377)
T TIGR03300 249 YQGRVAALDLRSGRVLWKRD-ASSYQGPAV--DDNRLYVTD-ADGVVVALDRRSG---S-ELWKNDELKYRQLTAPAV-V 319 (377)
T ss_pred cCCEEEEEECCCCcEEEeec-cCCccCceE--eCCEEEEEC-CCCeEEEEECCCC---c-EEEccccccCCccccCEE-E
Confidence 35689999998886432222 222222333 345788875 5789999997422 1 11111 1111 1111223 2
Q ss_pred CCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCCCCccEEEEEeCCEE
Q 016199 291 EGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPEMSLISSAIKIGDHL 369 (393)
Q Consensus 291 ~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~~~~~~~~~~~~g~L 369 (393)
++.++++... +.|+.+|+ +|+++..+..+.....+.-...+++|
T Consensus 320 g~~l~~~~~~-----------------------------------G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l 364 (377)
T TIGR03300 320 GGYLVVGDFE-----------------------------------GYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGL 364 (377)
T ss_pred CCEEEEEeCC-----------------------------------CEEEEEECCCCCEEEEEEcCCCccccCCEEECCEE
Confidence 4567776543 45888887 58988887754311222234456789
Q ss_pred EEEecCCCeEEEE
Q 016199 370 YCGSVHHRGILHL 382 (393)
Q Consensus 370 yigs~~~~~i~~~ 382 (393)
|+++. +..|..|
T Consensus 365 ~v~~~-dG~l~~~ 376 (377)
T TIGR03300 365 LVQTR-DGDLYAF 376 (377)
T ss_pred EEEeC-CceEEEe
Confidence 99974 3355544
No 79
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.08 E-value=0.0025 Score=64.29 Aligned_cols=186 Identities=15% Similarity=0.209 Sum_probs=113.5
Q ss_pred ceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCc-eEEEeC-Cc
Q 016199 86 EDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKG-LLKISG-NS 163 (393)
Q Consensus 86 e~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g-l~~id~-~g 163 (393)
-++.+.++|+.+..++.++.+..+....... ..............+++|.++| .+.++.+.++ |..+|. +.
T Consensus 163 ~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~------~~l~s~s~D~tiriwd~~~~ 235 (456)
T KOG0266|consen 163 TCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDG------SYLLSGSDDKTLRIWDLKDD 235 (456)
T ss_pred EEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCC------cEEEEecCCceEEEeeccCC
Confidence 3467889998766666777777776633220 0011111122357899999999 7666655444 555565 32
Q ss_pred ---eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE-EecCccCCCc
Q 016199 164 ---TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV-LVSDLYFANG 239 (393)
Q Consensus 164 ---~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~-~~~~l~~~ng 239 (393)
.+.+. |.. ..++++++.++|++.++- ...+.+..+|..+++... +...-...++
T Consensus 236 ~~~~~~l~----gH~-~~v~~~~f~p~g~~i~Sg-----------------s~D~tvriWd~~~~~~~~~l~~hs~~is~ 293 (456)
T KOG0266|consen 236 GRNLKTLK----GHS-TYVTSVAFSPDGNLLVSG-----------------SDDGTVRIWDVRTGECVRKLKGHSDGISG 293 (456)
T ss_pred CeEEEEec----CCC-CceEEEEecCCCCEEEEe-----------------cCCCcEEEEeccCCeEEEeeeccCCceEE
Confidence 23332 322 346799999999877763 445678889988766544 3444556788
Q ss_pred EEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeecc-CCCCCCeEEECCCCCEEEEEecC
Q 016199 240 VVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIET-LPGLPDNIRYDGEGHYLIALATE 301 (393)
Q Consensus 240 i~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~-l~g~P~~i~~d~~G~lwva~~~~ 301 (393)
+++++|++.++.+ +.++.|..||+.+....-.+.+... .+..-..+.++++|.+.+.....
T Consensus 294 ~~f~~d~~~l~s~-s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d 355 (456)
T KOG0266|consen 294 LAFSPDGNLLVSA-SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLD 355 (456)
T ss_pred EEECCCCCEEEEc-CCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCC
Confidence 9999999766555 6789999999864321101222211 11111557789999866655543
No 80
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.06 E-value=0.0017 Score=59.66 Aligned_cols=193 Identities=15% Similarity=0.187 Sum_probs=100.4
Q ss_pred CceeeeEECCC-CCCCCceEEEEEeCC-CceEEEeCCc--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhh
Q 016199 128 GRPLGIAFANS-DPDADRITMIVADAY-KGLLKISGNS--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLRE 203 (393)
Q Consensus 128 ~~p~gl~~d~~-G~~~~~~~L~v~~~~-~gl~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~ 203 (393)
..+.||+++++ + +||..... ..|+.++.+| .+.+. ..| +.-+.+|+...+|.+.+++
T Consensus 22 ~e~SGLTy~pd~~------tLfaV~d~~~~i~els~~G~vlr~i~--l~g--~~D~EgI~y~g~~~~vl~~--------- 82 (248)
T PF06977_consen 22 DELSGLTYNPDTG------TLFAVQDEPGEIYELSLDGKVLRRIP--LDG--FGDYEGITYLGNGRYVLSE--------- 82 (248)
T ss_dssp S-EEEEEEETTTT------EEEEEETTTTEEEEEETT--EEEEEE---SS---SSEEEEEE-STTEEEEEE---------
T ss_pred CCccccEEcCCCC------eEEEEECCCCEEEEEcCCCCEEEEEe--CCC--CCCceeEEEECCCEEEEEE---------
Confidence 45899999986 5 78877554 4588999988 33322 222 3346688888888887875
Q ss_pred heehhcccCCCcEEEEEeC--CCCeE-----EEEecCc-----cCCCcEEEcCCCCEEEEE-eCCCCeEEEEEec--CCC
Q 016199 204 YILDIFEGKPNGRLLSFDP--VTKET-----KVLVSDL-----YFANGVVLSPDQTHLVYC-ETSMRRCRKFYIK--GKN 268 (393)
Q Consensus 204 ~~~~~~e~~~~g~l~~~d~--~t~~~-----~~~~~~l-----~~~ngi~~s~dg~~l~v~-~~~~~ri~~~~~~--g~~ 268 (393)
...++|+.++. .+... +.+.-++ ...-|+++++.++.+|++ |..-.+|+.++.. +..
T Consensus 83 --------Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~ 154 (248)
T PF06977_consen 83 --------ERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFD 154 (248)
T ss_dssp --------TTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS-
T ss_pred --------cCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccc
Confidence 23456666554 33222 1121111 223589999987666554 4433456666541 111
Q ss_pred Ccce--eeee-cc-CCCCCCeEEECCC-CCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC
Q 016199 269 AGRV--EKFI-ET-LPGLPDNIRYDGE-GHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL 343 (393)
Q Consensus 269 ~~~~--~~~~-~~-l~g~P~~i~~d~~-G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~ 343 (393)
.... ..+. .. .-.-|.++++|+. |++||-...+ ..|+.+|.
T Consensus 155 ~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es----------------------------------~~l~~~d~ 200 (248)
T PF06977_consen 155 LFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDES----------------------------------RLLLELDR 200 (248)
T ss_dssp -EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTT----------------------------------TEEEEE-T
T ss_pred eeeccccccccccceeccccceEEcCCCCeEEEEECCC----------------------------------CeEEEECC
Confidence 0000 0000 00 0113678898886 6788876654 46999999
Q ss_pred CCcEEEEeeCCC--------C-CccEEEEEeCCEEEEEecCCCeEEEE
Q 016199 344 DGKPIAHYYDPE--------M-SLISSAIKIGDHLYCGSVHHRGILHL 382 (393)
Q Consensus 344 ~g~~~~~~~d~~--------~-~~~~~~~~~~g~Lyigs~~~~~i~~~ 382 (393)
+|+++..+.... + +.--.+...+|+|||.|- .|-.++|
T Consensus 201 ~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE-pNlfy~f 247 (248)
T PF06977_consen 201 QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE-PNLFYRF 247 (248)
T ss_dssp T--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEET-TTEEEEE
T ss_pred CCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcC-CceEEEe
Confidence 999988776422 2 222233446799999984 5566655
No 81
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.06 E-value=0.00073 Score=65.30 Aligned_cols=188 Identities=13% Similarity=0.156 Sum_probs=115.3
Q ss_pred CCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCce-eeeEECCCCCCCCceE--EEEEeCCCceEEEe
Q 016199 84 GPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRP-LGIAFANSDPDADRIT--MIVADAYKGLLKIS 160 (393)
Q Consensus 84 ~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p-~gl~~d~~G~~~~~~~--L~v~~~~~gl~~id 160 (393)
+-.++-|.|.-..|.++..++.+..|..+++.+.. ++.. .....| ...+|.++| . ++.+....=++.+|
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~-lqS~-~l~~fPi~~a~f~p~G------~~~i~~s~rrky~ysyD 286 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPK-LQSI-HLEKFPIQKAEFAPNG------HSVIFTSGRRKYLYSYD 286 (514)
T ss_pred CceEEEecCCCceEEEecCCCcEEEEEecCccChh-heee-eeccCccceeeecCCC------ceEEEecccceEEEEee
Confidence 44568899988888888889977777777765443 2222 112233 456778888 5 33332222367778
Q ss_pred CCc--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCC
Q 016199 161 GNS--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFAN 238 (393)
Q Consensus 161 ~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~n 238 (393)
... ++.+. ...|.+-..+.-+.+++++.+.+.. ...|.|+.+..+|+++..-..--....
T Consensus 287 le~ak~~k~~-~~~g~e~~~~e~FeVShd~~fia~~-----------------G~~G~I~lLhakT~eli~s~KieG~v~ 348 (514)
T KOG2055|consen 287 LETAKVTKLK-PPYGVEEKSMERFEVSHDSNFIAIA-----------------GNNGHIHLLHAKTKELITSFKIEGVVS 348 (514)
T ss_pred cccccccccc-CCCCcccchhheeEecCCCCeEEEc-----------------ccCceEEeehhhhhhhhheeeeccEEe
Confidence 755 33332 2334333456778899998754432 346778888888776532211123457
Q ss_pred cEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecC
Q 016199 239 GVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATE 301 (393)
Q Consensus 239 gi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~ 301 (393)
+++|+.|++.||++.. .+.|+.|++... .-...|.+...-.-..+|.+.+|. |+|+...
T Consensus 349 ~~~fsSdsk~l~~~~~-~GeV~v~nl~~~--~~~~rf~D~G~v~gts~~~S~ng~-ylA~GS~ 407 (514)
T KOG2055|consen 349 DFTFSSDSKELLASGG-TGEVYVWNLRQN--SCLHRFVDDGSVHGTSLCISLNGS-YLATGSD 407 (514)
T ss_pred eEEEecCCcEEEEEcC-CceEEEEecCCc--ceEEEEeecCccceeeeeecCCCc-eEEeccC
Confidence 7889999988888764 569999999643 224456544222234577788888 6666543
No 82
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.01 E-value=0.0093 Score=59.68 Aligned_cols=222 Identities=11% Similarity=0.052 Sum_probs=107.5
Q ss_pred eEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEE-EEEeCC--CceEEEeCCc--eEEEeeccCCcccccc
Q 016199 105 WIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITM-IVADAY--KGLLKISGNS--TVLLTDEAEGQKFKLT 179 (393)
Q Consensus 105 ~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L-~v~~~~--~gl~~id~~g--~~~l~~~~~g~~~~~~ 179 (393)
.|+..+.++.. ...+.........-++.+||. +..+ |+.... ..|+.++.++ .+.+. ...+..
T Consensus 166 ~l~~~d~dG~~----~~~lt~~~~~~~sP~wSPDG~---~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~~~g~~---- 233 (428)
T PRK01029 166 ELWSVDYDGQN----LRPLTQEHSLSITPTWMHIGS---GFPYLYVSYKLGVPKIFLGSLENPAGKKIL-ALQGNQ---- 233 (428)
T ss_pred eEEEEcCCCCC----ceEcccCCCCcccceEccCCC---ceEEEEEEccCCCceEEEEECCCCCceEee-cCCCCc----
Confidence 46666655543 233322111123346778871 0112 344322 2488888766 34443 233322
Q ss_pred ccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEE--EeCCC---CeEEEEecC-ccCCCcEEEcCCCCEEEEE
Q 016199 180 DGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLS--FDPVT---KETKVLVSD-LYFANGVVLSPDQTHLVYC 252 (393)
Q Consensus 180 ~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~--~d~~t---~~~~~~~~~-l~~~ngi~~s~dg~~l~v~ 252 (393)
....++||| .|.++... .+...++. ++..+ ++.+.+..+ .......+++|||+.|+++
T Consensus 234 ~~p~wSPDG~~Laf~s~~---------------~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~ 298 (428)
T PRK01029 234 LMPTFSPRKKLLAFISDR---------------YGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFV 298 (428)
T ss_pred cceEECCCCCEEEEEECC---------------CCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEE
Confidence 245789999 56665311 11112333 45433 333444432 2233467899999977765
Q ss_pred eCC--CCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCC
Q 016199 253 ETS--MRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPP 330 (393)
Q Consensus 253 ~~~--~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 330 (393)
... ...|+++++++.. +..+.+. ...+.....+.++||+..+-.....
T Consensus 299 s~~~g~~~ly~~~~~~~g-~~~~~lt-~~~~~~~~p~wSPDG~~Laf~~~~~---------------------------- 348 (428)
T PRK01029 299 SNKDGRPRIYIMQIDPEG-QSPRLLT-KKYRNSSCPAWSPDGKKIAFCSVIK---------------------------- 348 (428)
T ss_pred ECCCCCceEEEEECcccc-cceEEec-cCCCCccceeECCCCCEEEEEEcCC----------------------------
Confidence 532 3368888775321 1222222 1122234567889998443222110
Q ss_pred CCCCCceEEEECCCCcEEEEeeCCC--CCccEEEEEeCCEEEEEecC--CCeEEEEeCCCC
Q 016199 331 MGKSSSGVFIVDLDGKPIAHYYDPE--MSLISSAIKIGDHLYCGSVH--HRGILHLDVNQH 387 (393)
Q Consensus 331 ~~~~~~~v~~~d~~g~~~~~~~d~~--~~~~~~~~~~~g~Lyigs~~--~~~i~~~~~~~~ 387 (393)
....|..+|.++...+.+.... ... ....+++..|++.+.. ...|..++++..
T Consensus 349 ---g~~~I~v~dl~~g~~~~Lt~~~~~~~~-p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 349 ---GVRQICVYDLATGRDYQLTTSPENKES-PSWAIDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred ---CCcEEEEEECCCCCeEEccCCCCCccc-eEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 0124777887665555554322 111 1223445566655432 245667776544
No 83
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=98.01 E-value=0.0026 Score=62.33 Aligned_cols=147 Identities=12% Similarity=0.070 Sum_probs=84.2
Q ss_pred CceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCce
Q 016199 85 PEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNST 164 (393)
Q Consensus 85 Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g~ 164 (393)
--+++|.++|+ +.+|+.+|.|..|++.+... .+......++..+++.-++| .|+-+.-++.|..+|.+-
T Consensus 249 Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~---~k~~~aH~ggv~~L~~lr~G------tllSGgKDRki~~Wd~~y- 317 (626)
T KOG2106|consen 249 VLCVTFLENGD-VITGDSGGNILIWSKGTNRI---SKQVHAHDGGVFSLCMLRDG------TLLSGGKDRKIILWDDNY- 317 (626)
T ss_pred EEEEEEcCCCC-EEeecCCceEEEEeCCCceE---EeEeeecCCceEEEEEecCc------cEeecCccceEEeccccc-
Confidence 34689999998 77999999999999866431 11221335778889999999 888765556677776332
Q ss_pred EEEee-ccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEc
Q 016199 165 VLLTD-EAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLS 243 (393)
Q Consensus 165 ~~l~~-~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s 243 (393)
+.+.. +.+. .+..+.-|+... +.||++.+ .+.|++=+..++...........--|++..
T Consensus 318 ~k~r~~elPe-~~G~iRtv~e~~-~di~vGTt------------------rN~iL~Gt~~~~f~~~v~gh~delwgla~h 377 (626)
T KOG2106|consen 318 RKLRETELPE-QFGPIRTVAEGK-GDILVGTT------------------RNFILQGTLENGFTLTVQGHGDELWGLATH 377 (626)
T ss_pred cccccccCch-hcCCeeEEecCC-CcEEEeec------------------cceEEEeeecCCceEEEEecccceeeEEcC
Confidence 11111 1111 122233444333 35999853 234555554444333322222345788888
Q ss_pred CCCCEEEEEeCCCCeEEEEE
Q 016199 244 PDQTHLVYCETSMRRCRKFY 263 (393)
Q Consensus 244 ~dg~~l~v~~~~~~ri~~~~ 263 (393)
|+.. +|++......+..++
T Consensus 378 ps~~-q~~T~gqdk~v~lW~ 396 (626)
T KOG2106|consen 378 PSKN-QLLTCGQDKHVRLWN 396 (626)
T ss_pred CChh-heeeccCcceEEEcc
Confidence 8874 555554444444444
No 84
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=98.01 E-value=0.00053 Score=65.55 Aligned_cols=186 Identities=19% Similarity=0.280 Sum_probs=116.0
Q ss_pred CccCCCceEEEecC--CCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceE
Q 016199 80 GVLKGPEDLLYDAH--SKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLL 157 (393)
Q Consensus 80 g~~~~Pe~ia~d~~--g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~ 157 (393)
|....-.++.|.|. +..+-+++.||.+..|+.++.. .+..+.....+...++|.|+| +++....+..-.
T Consensus 215 gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~---~l~~l~gH~~RVs~VafHPsG------~~L~TasfD~tW 285 (459)
T KOG0272|consen 215 GHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET---PLQDLEGHLARVSRVAFHPSG------KFLGTASFDSTW 285 (459)
T ss_pred ccccceeeEEEccCCCccceeeeccCCceeeeccCCCc---chhhhhcchhhheeeeecCCC------ceeeecccccch
Confidence 33344455777775 3357788889988777766532 133444445678899999999 776665555444
Q ss_pred E-EeCCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec-Cc
Q 016199 158 K-ISGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS-DL 234 (393)
Q Consensus 158 ~-id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~-~l 234 (393)
+ +|... .+.+ ..+|.. ..+.++++.+||.+..+-. ....++| +|..+++...+.. .+
T Consensus 286 RlWD~~tk~ElL--~QEGHs-~~v~~iaf~~DGSL~~tGG---------------lD~~~Rv--WDlRtgr~im~L~gH~ 345 (459)
T KOG0272|consen 286 RLWDLETKSELL--LQEGHS-KGVFSIAFQPDGSLAATGG---------------LDSLGRV--WDLRTGRCIMFLAGHI 345 (459)
T ss_pred hhcccccchhhH--hhcccc-cccceeEecCCCceeeccC---------------ccchhhe--eecccCcEEEEecccc
Confidence 3 35443 2233 223432 4467999999999877621 1234544 4666676655544 45
Q ss_pred cCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCC---CCCeEEECC-CCCEEEEEecC
Q 016199 235 YFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPG---LPDNIRYDG-EGHYLIALATE 301 (393)
Q Consensus 235 ~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g---~P~~i~~d~-~G~lwva~~~~ 301 (393)
....+|+++|+| +.+.+.+..+.+..||+.+.+ +.+ ..|+ .-..+++++ .|.+.+++...
T Consensus 346 k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r~----~ly--~ipAH~nlVS~Vk~~p~~g~fL~TasyD 409 (459)
T KOG0272|consen 346 KEILSVAFSPNG-YHLATGSSDNTCKVWDLRMRS----ELY--TIPAHSNLVSQVKYSPQEGYFLVTASYD 409 (459)
T ss_pred cceeeEeECCCc-eEEeecCCCCcEEEeeecccc----cce--ecccccchhhheEecccCCeEEEEcccC
Confidence 667899999999 677888888999999986432 111 2232 234578887 46566655533
No 85
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=98.00 E-value=2.9e-05 Score=59.37 Aligned_cols=58 Identities=10% Similarity=0.300 Sum_probs=42.2
Q ss_pred CcEEEcCCCCEEEEEeCC-----------------CCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199 238 NGVVLSPDQTHLVYCETS-----------------MRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA 299 (393)
Q Consensus 238 ngi~~s~dg~~l~v~~~~-----------------~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~ 299 (393)
|++++++++..+|+++++ ++||++|++ .+++.+++++++. +|+||++++|+.+++-+-
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp---~t~~~~vl~~~L~-fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDP---STKETTVLLDGLY-FPNGVALSPDESFVLVAE 75 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEET---TTTEEEEEEEEES-SEEEEEE-TTSSEEEEEE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEEC---CCCeEEEehhCCC-ccCeEEEcCCCCEEEEEe
Confidence 678999995589999976 589999997 4556788888887 899999999999554433
No 86
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=0.013 Score=54.24 Aligned_cols=185 Identities=12% Similarity=0.170 Sum_probs=109.2
Q ss_pred cCCCceEEEecCCCEEEEEec--CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCC-ceEE
Q 016199 82 LKGPEDLLYDAHSKLIYTGCE--DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYK-GLLK 158 (393)
Q Consensus 82 ~~~Pe~ia~d~~g~~L~~~~~--~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~-gl~~ 158 (393)
-.|++.+.|....+.+.-++. |..|..++..+++ .+..|.........|...|.+ ..++..+.. -|..
T Consensus 56 kyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNk---ylRYF~GH~~~V~sL~~sP~~------d~FlS~S~D~tvrL 126 (311)
T KOG1446|consen 56 KYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNK---YLRYFPGHKKRVNSLSVSPKD------DTFLSSSLDKTVRL 126 (311)
T ss_pred cccccEEEEecCCceEEEccCCCCCceEEEEeecCc---eEEEcCCCCceEEEEEecCCC------CeEEecccCCeEEe
Confidence 367888777776655544443 5678888877765 133343344568899999877 666665544 5666
Q ss_pred EeCCc---eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCC---CeEEEE--
Q 016199 159 ISGNS---TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVT---KETKVL-- 230 (393)
Q Consensus 159 id~~g---~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t---~~~~~~-- 230 (393)
+|... ...+ ...+. .-.++||+|.++..- ..+..|-.||... |-.+.+
T Consensus 127 WDlR~~~cqg~l--~~~~~-----pi~AfDp~GLifA~~-----------------~~~~~IkLyD~Rs~dkgPF~tf~i 182 (311)
T KOG1446|consen 127 WDLRVKKCQGLL--NLSGR-----PIAAFDPEGLIFALA-----------------NGSELIKLYDLRSFDKGPFTTFSI 182 (311)
T ss_pred eEecCCCCceEE--ecCCC-----cceeECCCCcEEEEe-----------------cCCCeEEEEEecccCCCCceeEcc
Confidence 77542 1111 12222 245899999776653 2333677777532 222222
Q ss_pred e-cCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEe-cCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecC
Q 016199 231 V-SDLYFANGVVLSPDQTHLVYCETSMRRCRKFYI-KGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATE 301 (393)
Q Consensus 231 ~-~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~-~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~ 301 (393)
. .....-+.+.+++||+.++++.. .+-++.++- +|......+... +....|-.-++.+||.+.++....
T Consensus 183 ~~~~~~ew~~l~FS~dGK~iLlsT~-~s~~~~lDAf~G~~~~tfs~~~-~~~~~~~~a~ftPds~Fvl~gs~d 253 (311)
T KOG1446|consen 183 TDNDEAEWTDLEFSPDGKSILLSTN-ASFIYLLDAFDGTVKSTFSGYP-NAGNLPLSATFTPDSKFVLSGSDD 253 (311)
T ss_pred CCCCccceeeeEEcCCCCEEEEEeC-CCcEEEEEccCCcEeeeEeecc-CCCCcceeEEECCCCcEEEEecCC
Confidence 1 22445688999999999988765 455666553 232222222111 222356567788999988876653
No 87
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.99 E-value=0.0082 Score=54.42 Aligned_cols=184 Identities=18% Similarity=0.218 Sum_probs=101.4
Q ss_pred EECCCCCCCCceEEEEEeCCCceEEEeC-CceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccC
Q 016199 134 AFANSDPDADRITMIVADAYKGLLKISG-NSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGK 212 (393)
Q Consensus 134 ~~d~~G~~~~~~~L~v~~~~~gl~~id~-~g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~ 212 (393)
....+| .+|+++..+.|+.+|. +|........++. +..+ . ...++.+|+..
T Consensus 32 ~~~~~~------~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~~--~-~~~~~~v~v~~------------------ 83 (238)
T PF13360_consen 32 AVPDGG------RVYVASGDGNLYALDAKTGKVLWRFDLPGP-ISGA--P-VVDGGRVYVGT------------------ 83 (238)
T ss_dssp EEEETT------EEEEEETTSEEEEEETTTSEEEEEEECSSC-GGSG--E-EEETTEEEEEE------------------
T ss_pred EEEeCC------EEEEEcCCCEEEEEECCCCCEEEEeecccc-ccce--e-eeccccccccc------------------
Confidence 444567 9999988888999997 5533333333222 1111 1 33467888874
Q ss_pred CCcEEEEEeCCCCeEEEE--ecC---ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCC---
Q 016199 213 PNGRLLSFDPVTKETKVL--VSD---LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPD--- 284 (393)
Q Consensus 213 ~~g~l~~~d~~t~~~~~~--~~~---l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~--- 284 (393)
..+.|+++|..+|+..-- ... ...........+++.+|+... .+.|+.++++. |+. .+..... .|.
T Consensus 84 ~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~l~~~d~~t---G~~-~w~~~~~-~~~~~~ 157 (238)
T PF13360_consen 84 SDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-SGKLVALDPKT---GKL-LWKYPVG-EPRGSS 157 (238)
T ss_dssp TTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-CSEEEEEETTT---TEE-EEEEESS-TT-SS-
T ss_pred ceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec-cCcEEEEecCC---CcE-EEEeecC-CCCCCc
Confidence 234899999877765432 211 111112222233667777764 78899999742 222 1111111 111
Q ss_pred ---------eEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCC
Q 016199 285 ---------NIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDP 354 (393)
Q Consensus 285 ---------~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~ 354 (393)
+-.+-.+|.++++...+ .++.+|. .|+.+. ...
T Consensus 158 ~~~~~~~~~~~~~~~~~~v~~~~~~g-----------------------------------~~~~~d~~tg~~~w--~~~ 200 (238)
T PF13360_consen 158 PISSFSDINGSPVISDGRVYVSSGDG-----------------------------------RVVAVDLATGEKLW--SKP 200 (238)
T ss_dssp -EEEETTEEEEEECCTTEEEEECCTS-----------------------------------SEEEEETTTTEEEE--EEC
T ss_pred ceeeecccccceEEECCEEEEEcCCC-----------------------------------eEEEEECCCCCEEE--Eec
Confidence 11122345777766532 2666675 455443 222
Q ss_pred CCCccEEEEEeCCEEEEEecCCCeEEEEeCCCCCC
Q 016199 355 EMSLISSAIKIGDHLYCGSVHHRGILHLDVNQHPA 389 (393)
Q Consensus 355 ~~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~~~~ 389 (393)
...........++.||+++ ....|..+|++....
T Consensus 201 ~~~~~~~~~~~~~~l~~~~-~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 201 ISGIYSLPSVDGGTLYVTS-SDGRLYALDLKTGKV 234 (238)
T ss_dssp SS-ECECEECCCTEEEEEE-TTTEEEEEETTTTEE
T ss_pred CCCccCCceeeCCEEEEEe-CCCEEEEEECCCCCE
Confidence 1112222567889999998 789999999977643
No 88
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.99 E-value=0.0032 Score=63.57 Aligned_cols=156 Identities=16% Similarity=0.243 Sum_probs=105.0
Q ss_pred cCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCc-eE
Q 016199 79 YGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKG-LL 157 (393)
Q Consensus 79 ~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g-l~ 157 (393)
.+...+-.+++|.++|+.+..++.|+.|..|+..... ...+.+.........++|.++| ++++.....+ +.
T Consensus 200 ~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~--~~~~~l~gH~~~v~~~~f~p~g------~~i~Sgs~D~tvr 271 (456)
T KOG0266|consen 200 SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG--RNLKTLKGHSTYVTSVAFSPDG------NLLVSGSDDGTVR 271 (456)
T ss_pred cccccceeeeEECCCCcEEEEecCCceEEEeeccCCC--eEEEEecCCCCceEEEEecCCC------CEEEEecCCCcEE
Confidence 4555667779999999988888889999999883221 1144444444567899999999 7766655555 55
Q ss_pred EEeCCc---eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEE--EEec
Q 016199 158 KISGNS---TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETK--VLVS 232 (393)
Q Consensus 158 ~id~~g---~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~--~~~~ 232 (393)
.+|..+ ...+.... ..+.++++.++|+++++. ...+.|..||..++... ....
T Consensus 272 iWd~~~~~~~~~l~~hs-----~~is~~~f~~d~~~l~s~-----------------s~d~~i~vwd~~~~~~~~~~~~~ 329 (456)
T KOG0266|consen 272 IWDVRTGECVRKLKGHS-----DGISGLAFSPDGNLLVSA-----------------SYDGTIRVWDLETGSKLCLKLLS 329 (456)
T ss_pred EEeccCCeEEEeeeccC-----CceEEEEECCCCCEEEEc-----------------CCCccEEEEECCCCceeeeeccc
Confidence 567654 33343222 235688999999877764 33567899999988842 2333
Q ss_pred CccCC---CcEEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199 233 DLYFA---NGVVLSPDQTHLVYCETSMRRCRKFYIK 265 (393)
Q Consensus 233 ~l~~~---ngi~~s~dg~~l~v~~~~~~ri~~~~~~ 265 (393)
+...+ .-+.++|++++++.. ..++.+..|++.
T Consensus 330 ~~~~~~~~~~~~fsp~~~~ll~~-~~d~~~~~w~l~ 364 (456)
T KOG0266|consen 330 GAENSAPVTSVQFSPNGKYLLSA-SLDRTLKLWDLR 364 (456)
T ss_pred CCCCCCceeEEEECCCCcEEEEe-cCCCeEEEEEcc
Confidence 33333 788999999877554 445667777775
No 89
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.93 E-value=0.0021 Score=59.07 Aligned_cols=151 Identities=14% Similarity=0.146 Sum_probs=96.5
Q ss_pred CCCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeC
Q 016199 83 KGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISG 161 (393)
Q Consensus 83 ~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~ 161 (393)
..-|+|++-.| .||.=+. ++..+.+|.++-+ ....+.- .+.-=||+.|.+ .||+.|....|+.+|+
T Consensus 90 ~FgEGit~~~d--~l~qLTWk~~~~f~yd~~tl~---~~~~~~y-~~EGWGLt~dg~-------~Li~SDGS~~L~~~dP 156 (264)
T PF05096_consen 90 YFGEGITILGD--KLYQLTWKEGTGFVYDPNTLK---KIGTFPY-PGEGWGLTSDGK-------RLIMSDGSSRLYFLDP 156 (264)
T ss_dssp --EEEEEEETT--EEEEEESSSSEEEEEETTTTE---EEEEEE--SSS--EEEECSS-------CEEEE-SSSEEEEE-T
T ss_pred ccceeEEEECC--EEEEEEecCCeEEEEccccce---EEEEEec-CCcceEEEcCCC-------EEEEECCccceEEECC
Confidence 45677877743 5877665 7788889987643 1333322 345568887643 6999998889999999
Q ss_pred Cc---eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec--C---
Q 016199 162 NS---TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS--D--- 233 (393)
Q Consensus 162 ~g---~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~--~--- 233 (393)
+. ...+.-..++.+....|-+... +|.||.-.- .+..|.++||.+|++....+ +
T Consensus 157 ~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW-----------------~td~I~~Idp~tG~V~~~iDls~L~~ 218 (264)
T PF05096_consen 157 ETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVW-----------------QTDRIVRIDPETGKVVGWIDLSGLRP 218 (264)
T ss_dssp TT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEET-----------------TSSEEEEEETTT-BEEEEEE-HHHHH
T ss_pred cccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeC-----------------CCCeEEEEeCCCCeEEEEEEhhHhhh
Confidence 77 2233223456777777888765 788887641 23589999999999876532 1
Q ss_pred -----------ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEe
Q 016199 234 -----------LYFANGVVLSPDQTHLVYCETSMRRCRKFYI 264 (393)
Q Consensus 234 -----------l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~ 264 (393)
...-||||.+++.+.+||+.-.=.++++..+
T Consensus 219 ~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l 260 (264)
T PF05096_consen 219 EVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEVKL 260 (264)
T ss_dssp HHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEEEEEE
T ss_pred cccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEEEEE
Confidence 1246999999999999999865567777665
No 90
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.90 E-value=0.0086 Score=54.26 Aligned_cols=172 Identities=13% Similarity=0.120 Sum_probs=90.4
Q ss_pred EEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEe-CCceEEE
Q 016199 89 LYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKIS-GNSTVLL 167 (393)
Q Consensus 89 a~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id-~~g~~~l 167 (393)
++..++ .+|+++.++.|++++..+++ ...-....+.......-.++ .+|++...+.|+.+| .+|....
T Consensus 32 ~~~~~~-~v~~~~~~~~l~~~d~~tG~----~~W~~~~~~~~~~~~~~~~~------~v~v~~~~~~l~~~d~~tG~~~W 100 (238)
T PF13360_consen 32 AVPDGG-RVYVASGDGNLYALDAKTGK----VLWRFDLPGPISGAPVVDGG------RVYVGTSDGSLYALDAKTGKVLW 100 (238)
T ss_dssp EEEETT-EEEEEETTSEEEEEETTTSE----EEEEEECSSCGGSGEEEETT------EEEEEETTSEEEEEETTTSCEEE
T ss_pred EEEeCC-EEEEEcCCCEEEEEECCCCC----EEEEeeccccccceeeeccc------ccccccceeeeEecccCCcceee
Confidence 343344 69999999999999987664 22222222222222233456 899997666799999 4562222
Q ss_pred e-ecc--CCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCC-------
Q 016199 168 T-DEA--EGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFA------- 237 (393)
Q Consensus 168 ~-~~~--~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~------- 237 (393)
. ... +...........++ ++.+|++. ..+.|+.+|+++|+..-.... ..+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------------------~~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~ 160 (238)
T PF13360_consen 101 SIYLTSSPPAGVRSSSSPAVD-GDRLYVGT------------------SSGKLVALDPKTGKLLWKYPV-GEPRGSSPIS 160 (238)
T ss_dssp EEEE-SSCTCSTB--SEEEEE-TTEEEEEE------------------TCSEEEEEETTTTEEEEEEES-STT-SS--EE
T ss_pred eeccccccccccccccCceEe-cCEEEEEe------------------ccCcEEEEecCCCcEEEEeec-CCCCCCccee
Confidence 2 111 11111112233333 45677774 356899999998876322211 111
Q ss_pred -----CcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEE
Q 016199 238 -----NGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIAL 298 (393)
Q Consensus 238 -----ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~ 298 (393)
++-.+..++ .+|++.. .+++..+++.. ++.. +... ..-+.......++.+|++.
T Consensus 161 ~~~~~~~~~~~~~~-~v~~~~~-~g~~~~~d~~t---g~~~-w~~~-~~~~~~~~~~~~~~l~~~~ 219 (238)
T PF13360_consen 161 SFSDINGSPVISDG-RVYVSSG-DGRVVAVDLAT---GEKL-WSKP-ISGIYSLPSVDGGTLYVTS 219 (238)
T ss_dssp EETTEEEEEECCTT-EEEEECC-TSSEEEEETTT---TEEE-EEEC-SS-ECECEECCCTEEEEEE
T ss_pred eecccccceEEECC-EEEEEcC-CCeEEEEECCC---CCEE-EEec-CCCccCCceeeCCEEEEEe
Confidence 122233345 7877765 44566667643 3322 3222 2223333344566788877
No 91
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=97.90 E-value=0.0068 Score=54.53 Aligned_cols=182 Identities=16% Similarity=0.129 Sum_probs=110.9
Q ss_pred EEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc--eEEEeeccCCc
Q 016199 97 IYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS--TVLLTDEAEGQ 174 (393)
Q Consensus 97 L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g--~~~l~~~~~g~ 174 (393)
|..+..|..|..|...++. ....+.+..+..+.|.+.+++ +.+++.....|..+|.+. ...+. .+++.
T Consensus 13 LvsA~YDhTIRfWqa~tG~---C~rTiqh~dsqVNrLeiTpdk------~~LAaa~~qhvRlyD~~S~np~Pv~-t~e~h 82 (311)
T KOG0315|consen 13 LVSAGYDHTIRFWQALTGI---CSRTIQHPDSQVNRLEITPDK------KDLAAAGNQHVRLYDLNSNNPNPVA-TFEGH 82 (311)
T ss_pred EEeccCcceeeeeehhcCe---EEEEEecCccceeeEEEcCCc------chhhhccCCeeEEEEccCCCCCcee-EEecc
Confidence 4444567788877766654 244455556778899999998 777776677788887654 11221 23343
Q ss_pred cccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeC
Q 016199 175 KFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCET 254 (393)
Q Consensus 175 ~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~ 254 (393)
. ..+..+.+..||+-..+. +..|.+-.+|...-............|.|.+.|+...|++++.
T Consensus 83 ~-kNVtaVgF~~dgrWMyTg-----------------seDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dq 144 (311)
T KOG0315|consen 83 T-KNVTAVGFQCDGRWMYTG-----------------SEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQ 144 (311)
T ss_pred C-CceEEEEEeecCeEEEec-----------------CCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecC
Confidence 2 345677788888644442 4456777788765333333333455689999999877877664
Q ss_pred CCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecC-cchhhhhh
Q 016199 255 SMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATE-FSTYWDLA 309 (393)
Q Consensus 255 ~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~-r~~~~~~~ 309 (393)
++.|..+|+..+.. ...++....-.-..+.+++||.+.+|.+.- +--.|+++
T Consensus 145 -sg~irvWDl~~~~c--~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~ 197 (311)
T KOG0315|consen 145 -SGNIRVWDLGENSC--THELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLL 197 (311)
T ss_pred -CCcEEEEEccCCcc--ccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEcc
Confidence 78899999854311 111221111123557788888887776533 22344443
No 92
>PTZ00421 coronin; Provisional
Probab=97.86 E-value=0.031 Score=56.91 Aligned_cols=160 Identities=11% Similarity=0.056 Sum_probs=93.7
Q ss_pred CCCceEEEec-CCCEEEEEecCCeEEEEEcCCCCCc----ceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceE
Q 016199 83 KGPEDLLYDA-HSKLIYTGCEDGWIKRVTLNDSPAD----SLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLL 157 (393)
Q Consensus 83 ~~Pe~ia~d~-~g~~L~~~~~~g~I~~~~~~~~~~~----~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~ 157 (393)
..-.+++|+| +++.|.+++.|+.|..|+....... .....+.........+++.+++. +.|..+..++-|.
T Consensus 76 ~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~----~iLaSgs~DgtVr 151 (493)
T PTZ00421 76 GPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAM----NVLASAGADMVVN 151 (493)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCC----CEEEEEeCCCEEE
Confidence 3345789998 7778889999999999987643200 00222222334577899998641 0344444444467
Q ss_pred EEeCCceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCc--c
Q 016199 158 KISGNSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDL--Y 235 (393)
Q Consensus 158 ~id~~g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l--~ 235 (393)
.+|.+..+.+. ...+. ...+.++++.++|.+.++. ...+.|..||+.+++........ .
T Consensus 152 IWDl~tg~~~~-~l~~h-~~~V~sla~spdG~lLatg-----------------s~Dg~IrIwD~rsg~~v~tl~~H~~~ 212 (493)
T PTZ00421 152 VWDVERGKAVE-VIKCH-SDQITSLEWNLDGSLLCTT-----------------SKDKKLNIIDPRDGTIVSSVEAHASA 212 (493)
T ss_pred EEECCCCeEEE-EEcCC-CCceEEEEEECCCCEEEEe-----------------cCCCEEEEEECCCCcEEEEEecCCCC
Confidence 77865411111 11111 1236688999999877763 34567889999876643222211 1
Q ss_pred CCCcEEEcCCCCEEEEEeC---CCCeEEEEEec
Q 016199 236 FANGVVLSPDQTHLVYCET---SMRRCRKFYIK 265 (393)
Q Consensus 236 ~~ngi~~s~dg~~l~v~~~---~~~ri~~~~~~ 265 (393)
....+.+.+++..++.+.. ..+.|..||+.
T Consensus 213 ~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr 245 (493)
T PTZ00421 213 KSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTR 245 (493)
T ss_pred cceEEEEcCCCCeEEEEecCCCCCCeEEEEeCC
Confidence 2234566777766655442 24678888875
No 93
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=97.84 E-value=0.001 Score=61.60 Aligned_cols=229 Identities=14% Similarity=0.240 Sum_probs=124.4
Q ss_pred cCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcc-----eeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC
Q 016199 79 YGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADS-----LVHNWINTGGRPLGIAFANSDPDADRITMIVADAY 153 (393)
Q Consensus 79 ~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~-----~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~ 153 (393)
-|.-..||+..|+|||+.|..|+.||-|-.|+--++...+ ....+........+|.|.+|- ..+...+.
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs------EMlAsGsq 283 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS------EMLASGSQ 283 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccH------HHhhccCc
Confidence 3555789999999999988889999988888765544110 011222223456788888776 55554444
Q ss_pred Cc---eEEEeCCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEe-CCCCe-E
Q 016199 154 KG---LLKISGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFD-PVTKE-T 227 (393)
Q Consensus 154 ~g---l~~id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d-~~t~~-~ 227 (393)
.| ++++...- .+.+ +......+..+.++.|+.-.++. + .....|+. .++|+ +
T Consensus 284 DGkIKvWri~tG~ClRrF----drAHtkGvt~l~FSrD~SqiLS~-----------------s-fD~tvRiHGlKSGK~L 341 (508)
T KOG0275|consen 284 DGKIKVWRIETGQCLRRF----DRAHTKGVTCLSFSRDNSQILSA-----------------S-FDQTVRIHGLKSGKCL 341 (508)
T ss_pred CCcEEEEEEecchHHHHh----hhhhccCeeEEEEccCcchhhcc-----------------c-ccceEEEeccccchhH
Confidence 44 33443211 2111 11111224566777777433331 1 11233332 33443 3
Q ss_pred EEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCC-CeEEECCCC-CEEEEEecCcchh
Q 016199 228 KVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLP-DNIRYDGEG-HYLIALATEFSTY 305 (393)
Q Consensus 228 ~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P-~~i~~d~~G-~lwva~~~~r~~~ 305 (393)
..+.....+.|...+++||..+ ++.+..+.+-.|+.+... -...|......+| +++..-++. .-+|.++..
T Consensus 342 KEfrGHsSyvn~a~ft~dG~~i-isaSsDgtvkvW~~Ktte--C~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrs---- 414 (508)
T KOG0275|consen 342 KEFRGHSSYVNEATFTDDGHHI-ISASSDGTVKVWHGKTTE--CLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRS---- 414 (508)
T ss_pred HHhcCccccccceEEcCCCCeE-EEecCCccEEEecCcchh--hhhhccCCCCcccceeEEEcCCCCceEEEEcCC----
Confidence 3344456788999999999765 566678888888754211 1112211101122 233332222 234444433
Q ss_pred hhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCC---CCccEEEE-EeCCEEEEE
Q 016199 306 WDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPE---MSLISSAI-KIGDHLYCG 372 (393)
Q Consensus 306 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~---~~~~~~~~-~~~g~Lyig 372 (393)
+.|+.++-+|++++++..+. -.++++.. +.+..+|.-
T Consensus 415 ------------------------------ntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYci 455 (508)
T KOG0275|consen 415 ------------------------------NTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCI 455 (508)
T ss_pred ------------------------------CeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEE
Confidence 46888999999999998654 23333333 344556655
No 94
>PLN00181 protein SPA1-RELATED; Provisional
Probab=97.83 E-value=0.039 Score=59.71 Aligned_cols=156 Identities=10% Similarity=0.048 Sum_probs=88.7
Q ss_pred CceEEEecCCCEEEEEecCCeEEEEEcCCCCCcc-----eeeeeecCCCceeeeEECCC-CCCCCceEEEEEeCCCceEE
Q 016199 85 PEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADS-----LVHNWINTGGRPLGIAFANS-DPDADRITMIVADAYKGLLK 158 (393)
Q Consensus 85 Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~-----~~~~~~~~~~~p~gl~~d~~-G~~~~~~~L~v~~~~~gl~~ 158 (393)
-.+++|+++|+.+.++..++.|..|+........ ....+. ......++++.+. + ..|..+...+-|..
T Consensus 486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~-----~~las~~~Dg~v~l 559 (793)
T PLN00181 486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIK-----SQVASSNFEGVVQV 559 (793)
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCC-----CEEEEEeCCCeEEE
Confidence 3458899999988888889999999865321000 001111 1233567777653 4 13444443444566
Q ss_pred EeCCceEEEeeccCCccccccccEEEcC-CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCC
Q 016199 159 ISGNSTVLLTDEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFA 237 (393)
Q Consensus 159 id~~g~~~l~~~~~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ 237 (393)
+|....+.+. ...+.. ..+.++++++ +|.++++. ...+.|..||..++............
T Consensus 560 Wd~~~~~~~~-~~~~H~-~~V~~l~~~p~~~~~L~Sg-----------------s~Dg~v~iWd~~~~~~~~~~~~~~~v 620 (793)
T PLN00181 560 WDVARSQLVT-EMKEHE-KRVWSIDYSSADPTLLASG-----------------SDDGSVKLWSINQGVSIGTIKTKANI 620 (793)
T ss_pred EECCCCeEEE-EecCCC-CCEEEEEEcCCCCCEEEEE-----------------cCCCEEEEEECCCCcEEEEEecCCCe
Confidence 6765411111 112211 3366888986 67776663 34567888888766443222222334
Q ss_pred CcEEEc-CCCCEEEEEeCCCCeEEEEEecC
Q 016199 238 NGVVLS-PDQTHLVYCETSMRRCRKFYIKG 266 (393)
Q Consensus 238 ngi~~s-~dg~~l~v~~~~~~ri~~~~~~g 266 (393)
..+.+. ++|. .+++.+..+.|..|++..
T Consensus 621 ~~v~~~~~~g~-~latgs~dg~I~iwD~~~ 649 (793)
T PLN00181 621 CCVQFPSESGR-SLAFGSADHKVYYYDLRN 649 (793)
T ss_pred EEEEEeCCCCC-EEEEEeCCCeEEEEECCC
Confidence 556664 4564 556667788999999853
No 95
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.82 E-value=0.012 Score=56.83 Aligned_cols=183 Identities=11% Similarity=0.144 Sum_probs=103.7
Q ss_pred CceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEE-eC-C
Q 016199 85 PEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKI-SG-N 162 (393)
Q Consensus 85 Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~i-d~-~ 162 (393)
-.++.+.++...+.+++.+-.|+.|....... ........+...++...++| ..++.....|-+.+ |. +
T Consensus 264 i~~v~~~~~~~~v~~aSad~~i~vws~~~~s~---~~~~~~h~~~V~~ls~h~tg------eYllsAs~d~~w~Fsd~~~ 334 (506)
T KOG0289|consen 264 ITSVKFHKDLDTVITASADEIIRVWSVPLSSE---PTSSRPHEEPVTGLSLHPTG------EYLLSASNDGTWAFSDISS 334 (506)
T ss_pred EEEEEeccchhheeecCCcceEEeeccccccC---ccccccccccceeeeeccCC------cEEEEecCCceEEEEEccC
Confidence 33455556555555555555555554332210 11111223445788889999 77666666665554 32 3
Q ss_pred c--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE-EecCccCCCc
Q 016199 163 S--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV-LVSDLYFANG 239 (393)
Q Consensus 163 g--~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~-~~~~l~~~ng 239 (393)
| ..+..+...+.. ....++.|||.|+.+- +..+-|-.||.+.+.... +...-.....
T Consensus 335 g~~lt~vs~~~s~v~---~ts~~fHpDgLifgtg-----------------t~d~~vkiwdlks~~~~a~Fpght~~vk~ 394 (506)
T KOG0289|consen 335 GSQLTVVSDETSDVE---YTSAAFHPDGLIFGTG-----------------TPDGVVKIWDLKSQTNVAKFPGHTGPVKA 394 (506)
T ss_pred CcEEEEEeeccccce---eEEeeEcCCceEEecc-----------------CCCceEEEEEcCCccccccCCCCCCceeE
Confidence 4 333322212222 3467899999887762 556667778876554211 1112233467
Q ss_pred EEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199 240 VVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA 299 (393)
Q Consensus 240 i~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~ 299 (393)
|+|+.+| +.+++++..+.|..||+... ..+..+.-....--..+.+|..|.+.+...
T Consensus 395 i~FsENG-Y~Lat~add~~V~lwDLRKl--~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g 451 (506)
T KOG0289|consen 395 ISFSENG-YWLATAADDGSVKLWDLRKL--KNFKTIQLDEKKEVNSLSFDQSGTYLGIAG 451 (506)
T ss_pred EEeccCc-eEEEEEecCCeEEEEEehhh--cccceeeccccccceeEEEcCCCCeEEeec
Confidence 8999888 66677777788999999632 233434311100135588999999887653
No 96
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=97.80 E-value=0.029 Score=51.71 Aligned_cols=192 Identities=14% Similarity=0.131 Sum_probs=114.8
Q ss_pred EEecCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCc
Q 016199 76 KVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKG 155 (393)
Q Consensus 76 ~l~~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g 155 (393)
++..|.+.--.++-|.+|+++|..++.||++..||.-+.. .+..+.-...-...-++.|.| ++..+..-..
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Ttn---K~haipl~s~WVMtCA~sPSg------~~VAcGGLdN 119 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTN---KVHAIPLPSSWVMTCAYSPSG------NFVACGGLDN 119 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEccccc---ceeEEecCceeEEEEEECCCC------CeEEecCcCc
Confidence 4556666667788899999999888999999999987643 133333333445677899999 7776643222
Q ss_pred ---eEEEe-C--CceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE
Q 016199 156 ---LLKIS-G--NSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV 229 (393)
Q Consensus 156 ---l~~id-~--~g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~ 229 (393)
||.+. . +|......+..|.. .+.....+-.|+.|.-+ ++......+|.++++...
T Consensus 120 ~Csiy~ls~~d~~g~~~v~r~l~gHt-gylScC~f~dD~~ilT~------------------SGD~TCalWDie~g~~~~ 180 (343)
T KOG0286|consen 120 KCSIYPLSTRDAEGNVRVSRELAGHT-GYLSCCRFLDDNHILTG------------------SGDMTCALWDIETGQQTQ 180 (343)
T ss_pred eeEEEecccccccccceeeeeecCcc-ceeEEEEEcCCCceEec------------------CCCceEEEEEcccceEEE
Confidence 55554 2 33112222233322 23334455556666444 445567788887776544
Q ss_pred E-ecCccCCCcEEEcC-CCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199 230 L-VSDLYFANGVVLSP-DQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA 299 (393)
Q Consensus 230 ~-~~~l~~~ngi~~s~-dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~ 299 (393)
. .....-.-+++++| ++ ..|++......-..||+... .-...|..+ ..--+.+++-++|.-+++..
T Consensus 181 ~f~GH~gDV~slsl~p~~~-ntFvSg~cD~~aklWD~R~~--~c~qtF~gh-esDINsv~ffP~G~afatGS 248 (343)
T KOG0286|consen 181 VFHGHTGDVMSLSLSPSDG-NTFVSGGCDKSAKLWDVRSG--QCVQTFEGH-ESDINSVRFFPSGDAFATGS 248 (343)
T ss_pred EecCCcccEEEEecCCCCC-CeEEecccccceeeeeccCc--ceeEeeccc-ccccceEEEccCCCeeeecC
Confidence 3 33334455677888 66 57888887777888887422 223344322 22245677777776555443
No 97
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.79 E-value=0.011 Score=57.82 Aligned_cols=79 Identities=23% Similarity=0.208 Sum_probs=58.8
Q ss_pred EEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEE
Q 016199 216 RLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYL 295 (393)
Q Consensus 216 ~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lw 295 (393)
.|-.||..+++.+....++...-.+.+++||+.+.+++ .+..|+.++++.. ..+..-....++--++...++++ |
T Consensus 383 ~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaN-dr~el~vididng---nv~~idkS~~~lItdf~~~~nsr-~ 457 (668)
T COG4946 383 KLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAN-DRFELWVIDIDNG---NVRLIDKSEYGLITDFDWHPNSR-W 457 (668)
T ss_pred eEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEc-CceEEEEEEecCC---CeeEecccccceeEEEEEcCCce-e
Confidence 68889999999999888888888899999999887766 5788999999643 33322222335556677877775 6
Q ss_pred EEEe
Q 016199 296 IALA 299 (393)
Q Consensus 296 va~~ 299 (393)
+|-.
T Consensus 458 iAYa 461 (668)
T COG4946 458 IAYA 461 (668)
T ss_pred EEEe
Confidence 6655
No 98
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=97.76 E-value=0.0072 Score=62.00 Aligned_cols=190 Identities=19% Similarity=0.247 Sum_probs=112.5
Q ss_pred CCCceEEEecCCCEEEEEecCCeEEEEEcCCCC-----C------------c-----------ceeeeeecCCCceeeeE
Q 016199 83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSP-----A------------D-----------SLVHNWINTGGRPLGIA 134 (393)
Q Consensus 83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~-----~------------~-----------~~~~~~~~~~~~p~gl~ 134 (393)
++-.+..+++|+..|-.|..+-.|++|...... . + ...+......+...+..
T Consensus 379 ~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~s 458 (707)
T KOG0263|consen 379 QGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCS 458 (707)
T ss_pred CcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeee
Confidence 344455677777755566667777776655211 0 0 00011111234457888
Q ss_pred ECCCCCCCCceEEEEEeCCCc-eEEEeCCceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCC
Q 016199 135 FANSDPDADRITMIVADAYKG-LLKISGNSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKP 213 (393)
Q Consensus 135 ~d~~G~~~~~~~L~v~~~~~g-l~~id~~g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~ 213 (393)
|.|+. ++++.-++.+ +..+..+...-++. ..|.. .-+.++.+.|.| .||+.++. ..
T Consensus 459 FsPd~------rfLlScSED~svRLWsl~t~s~~V~-y~GH~-~PVwdV~F~P~G-yYFatas~--------------D~ 515 (707)
T KOG0263|consen 459 FSPDR------RFLLSCSEDSSVRLWSLDTWSCLVI-YKGHL-APVWDVQFAPRG-YYFATASH--------------DQ 515 (707)
T ss_pred ecccc------cceeeccCCcceeeeecccceeEEE-ecCCC-cceeeEEecCCc-eEEEecCC--------------Cc
Confidence 88887 7777656544 33334444111111 12322 225678899887 56665544 45
Q ss_pred CcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCC
Q 016199 214 NGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGH 293 (393)
Q Consensus 214 ~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~ 293 (393)
+.+||..|. +.-.+.++..+.-.+.+.|.|+.. ...+++...++..|++. ....++.|. +..+--..+++++.|+
T Consensus 516 tArLWs~d~-~~PlRifaghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~--~G~~VRiF~-GH~~~V~al~~Sp~Gr 590 (707)
T KOG0263|consen 516 TARLWSTDH-NKPLRIFAGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVS--TGNSVRIFT-GHKGPVTALAFSPCGR 590 (707)
T ss_pred eeeeeeccc-CCchhhhcccccccceEEECCccc-ccccCCCCceEEEEEcC--CCcEEEEec-CCCCceEEEEEcCCCc
Confidence 668888886 356667777788888899999984 44666767777778774 223456664 4444345688999998
Q ss_pred EEEEEec
Q 016199 294 YLIALAT 300 (393)
Q Consensus 294 lwva~~~ 300 (393)
+.+....
T Consensus 591 ~LaSg~e 597 (707)
T KOG0263|consen 591 YLASGDE 597 (707)
T ss_pred eEeeccc
Confidence 7765443
No 99
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.75 E-value=0.014 Score=54.84 Aligned_cols=185 Identities=16% Similarity=0.236 Sum_probs=104.5
Q ss_pred EEEecCCCEEEEEe-----cCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC------Cc-
Q 016199 88 LLYDAHSKLIYTGC-----EDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY------KG- 155 (393)
Q Consensus 88 ia~d~~g~~L~~~~-----~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~------~g- 155 (393)
-+|++||++||+.- ..|.|-.|+...+- ..+..|...+-.|+.|.+.+|| +.|.|++.+ .|
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~--~ri~E~~s~GIGPHel~l~pDG-----~tLvVANGGI~Thpd~GR 128 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGY--RRIGEFPSHGIGPHELLLMPDG-----ETLVVANGGIETHPDSGR 128 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCc--EEEeEecCCCcChhhEEEcCCC-----CEEEEEcCCCccCcccCc
Confidence 56899999898753 24567788877321 1245555556689999999999 368888532 12
Q ss_pred -----------eEEEeC-Cc--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEe
Q 016199 156 -----------LLKISG-NS--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFD 221 (393)
Q Consensus 156 -----------l~~id~-~g--~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d 221 (393)
|..+|. +| .+... ..+......+..++++.+|.+|++. +|.-+-.+..+ -|..++
T Consensus 129 ~kLNl~tM~psL~~ld~~sG~ll~q~~-Lp~~~~~lSiRHLa~~~~G~V~~a~--------Q~qg~~~~~~P--Lva~~~ 197 (305)
T PF07433_consen 129 AKLNLDTMQPSLVYLDARSGALLEQVE-LPPDLHQLSIRHLAVDGDGTVAFAM--------QYQGDPGDAPP--LVALHR 197 (305)
T ss_pred eecChhhcCCceEEEecCCCceeeeee-cCccccccceeeEEecCCCcEEEEE--------ecCCCCCccCC--eEEEEc
Confidence 333322 22 11110 0111122346688999999999995 22211111111 233343
Q ss_pred CCCCeEEEEecC-------ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCC--eEEECCCC
Q 016199 222 PVTKETKVLVSD-------LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPD--NIRYDGEG 292 (393)
Q Consensus 222 ~~t~~~~~~~~~-------l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~--~i~~d~~G 292 (393)
.. +..+.+.-. -.+.-.|+++.+++.+.++.--.+++..|+.. .+. +....+ +|| |++...+|
T Consensus 198 ~g-~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~---tg~---~~~~~~-l~D~cGva~~~~~ 269 (305)
T PF07433_consen 198 RG-GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAA---TGR---LLGSVP-LPDACGVAPTDDG 269 (305)
T ss_pred CC-CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECC---CCC---Eeeccc-cCceeeeeecCCc
Confidence 32 333333211 24567799999998888888878888888753 233 221111 444 56666666
Q ss_pred CEEEEEe
Q 016199 293 HYLIALA 299 (393)
Q Consensus 293 ~lwva~~ 299 (393)
++++..
T Consensus 270 -f~~ssG 275 (305)
T PF07433_consen 270 -FLVSSG 275 (305)
T ss_pred -eEEeCC
Confidence 555444
No 100
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.70 E-value=0.012 Score=57.02 Aligned_cols=168 Identities=14% Similarity=0.212 Sum_probs=89.4
Q ss_pred EEecCCCEE-EEEecCC--eEEEEEcCCCCCcceeeeeecCC-CceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc-
Q 016199 89 LYDAHSKLI-YTGCEDG--WIKRVTLNDSPADSLVHNWINTG-GRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS- 163 (393)
Q Consensus 89 a~d~~g~~L-~~~~~~g--~I~~~~~~~~~~~~~~~~~~~~~-~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g- 163 (393)
++.++|+.| |.+..+| .++.+++++++ ...+.... ....|....++. +.+|.......|.++|.++
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~----i~QLTdg~g~~~~g~~~s~~~-----~~~~Yv~~~~~l~~vdL~T~ 112 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGE----ITQLTDGPGDNTFGGFLSPDD-----RALYYVKNGRSLRRVDLDTL 112 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-E----EEE---SS-B-TTT-EE-TTS-----SEEEEEETTTEEEEEETTT-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCE----EEECccCCCCCccceEEecCC-----CeEEEEECCCeEEEEECCcC
Confidence 367788654 5555454 79999999887 66665422 223355555554 1554333567899999887
Q ss_pred -eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccch-----hhheehhcccCCCcEEEEEeCCCCeEEEEecCccCC
Q 016199 164 -TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYL-----REYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFA 237 (393)
Q Consensus 164 -~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~-----~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ 237 (393)
.+.+....++-.. --......|++.+++....+... ..++.++++.....+|+++|.+||+.+.+...-...
T Consensus 113 e~~~vy~~p~~~~g--~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wl 190 (386)
T PF14583_consen 113 EERVVYEVPDDWKG--YGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWL 190 (386)
T ss_dssp -EEEEEE--TTEEE--EEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-E
T ss_pred cEEEEEECCccccc--ccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccc
Confidence 3333322222111 01223456788777754332221 235567778888889999999999999887766666
Q ss_pred CcEEEcCCC-CEEEEEeCC-----CCeEEEEEecCC
Q 016199 238 NGVVLSPDQ-THLVYCETS-----MRRCRKFYIKGK 267 (393)
Q Consensus 238 ngi~~s~dg-~~l~v~~~~-----~~ri~~~~~~g~ 267 (393)
+-+.++|-. ..|-+|..+ ..||+..+.+|.
T Consensus 191 gH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~ 226 (386)
T PF14583_consen 191 GHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS 226 (386)
T ss_dssp EEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-
T ss_pred cCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC
Confidence 677777643 345555543 458888887654
No 101
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.69 E-value=0.0036 Score=60.61 Aligned_cols=176 Identities=10% Similarity=0.148 Sum_probs=106.1
Q ss_pred eEEEecCCC-EEEEEecCCeEEEEEcCCCCCcceeeeeecCCCce----eeeEECCCCCCCCceEE-EEEeCCCceEEEe
Q 016199 87 DLLYDAHSK-LIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRP----LGIAFANSDPDADRITM-IVADAYKGLLKIS 160 (393)
Q Consensus 87 ~ia~d~~g~-~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p----~gl~~d~~G~~~~~~~L-~v~~~~~gl~~id 160 (393)
+.+|.++|. +++++++..-+|.||+.+.+ +..+....+.+ .-..+.+++ ++ .++...+-|..+.
T Consensus 262 ~a~f~p~G~~~i~~s~rrky~ysyDle~ak----~~k~~~~~g~e~~~~e~FeVShd~------~fia~~G~~G~I~lLh 331 (514)
T KOG2055|consen 262 KAEFAPNGHSVIFTSGRRKYLYSYDLETAK----VTKLKPPYGVEEKSMERFEVSHDS------NFIAIAGNNGHIHLLH 331 (514)
T ss_pred eeeecCCCceEEEecccceEEEEeeccccc----cccccCCCCcccchhheeEecCCC------CeEEEcccCceEEeeh
Confidence 367888998 88888888889999998766 55554433332 344556777 43 3332233366665
Q ss_pred CCceEEEe-eccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE-Eec-CccC
Q 016199 161 GNSTVLLT-DEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV-LVS-DLYF 236 (393)
Q Consensus 161 ~~g~~~l~-~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~-~~~-~l~~ 236 (393)
..+.+.+. -..+|. +.+++++.|| .||++ .++|.||.+|........ ..+ +...
T Consensus 332 akT~eli~s~KieG~----v~~~~fsSdsk~l~~~------------------~~~GeV~v~nl~~~~~~~rf~D~G~v~ 389 (514)
T KOG2055|consen 332 AKTKELITSFKIEGV----VSDFTFSSDSKELLAS------------------GGTGEVYVWNLRQNSCLHRFVDDGSVH 389 (514)
T ss_pred hhhhhhhheeeeccE----EeeEEEecCCcEEEEE------------------cCCceEEEEecCCcceEEEEeecCccc
Confidence 44311111 122332 4578888998 46665 456789999987654332 232 3344
Q ss_pred CCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCC---cceeeeeccCCCCCCeEEECCCCCEE
Q 016199 237 ANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNA---GRVEKFIETLPGLPDNIRYDGEGHYL 295 (393)
Q Consensus 237 ~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~---~~~~~~~~~l~g~P~~i~~d~~G~lw 295 (393)
-..+|++.+|+ ++.+.+..+-+..|+.+.... -+...-++++..--+.+.+.+++.+.
T Consensus 390 gts~~~S~ng~-ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiL 450 (514)
T KOG2055|consen 390 GTSLCISLNGS-YLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQIL 450 (514)
T ss_pred eeeeeecCCCc-eEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhh
Confidence 56688889996 567777778888898653211 11111223554445678888888865
No 102
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=97.69 E-value=0.0016 Score=67.21 Aligned_cols=185 Identities=14% Similarity=0.198 Sum_probs=114.9
Q ss_pred CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeee---cCCCceeeeEECCCCCCCCceEEEEEeCCCceEEE
Q 016199 83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWI---NTGGRPLGIAFANSDPDADRITMIVADAYKGLLKI 159 (393)
Q Consensus 83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~---~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~i 159 (393)
..-.+++++.=|+..++|+..|.|-+|+.+.+-- ...|. ...+...|++.|.-+ ++.|+....|+..+
T Consensus 449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~---r~sf~~~~ah~~~V~gla~D~~n------~~~vsa~~~Gilkf 519 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIH---RKSFGDSPAHKGEVTGLAVDGTN------RLLVSAGADGILKF 519 (910)
T ss_pred cceEEEEEeccCceEEEeccCCeEEEEEcccCee---ecccccCccccCceeEEEecCCC------ceEEEccCcceEEE
Confidence 3445688888899999999999999999987641 22331 234557899999988 88888788887765
Q ss_pred -eCCceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE-ecCccCC
Q 016199 160 -SGNSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL-VSDLYFA 237 (393)
Q Consensus 160 -d~~g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~-~~~l~~~ 237 (393)
|-++...+....-+. .+..+.......+++.- -..-.|..||..|.++... -......
T Consensus 520 w~f~~k~l~~~l~l~~---~~~~iv~hr~s~l~a~~-----------------~ddf~I~vvD~~t~kvvR~f~gh~nri 579 (910)
T KOG1539|consen 520 WDFKKKVLKKSLRLGS---SITGIVYHRVSDLLAIA-----------------LDDFSIRVVDVVTRKVVREFWGHGNRI 579 (910)
T ss_pred EecCCcceeeeeccCC---Ccceeeeeehhhhhhhh-----------------cCceeEEEEEchhhhhhHHhhccccce
Confidence 544411221111111 12233333332222210 1123588899877655433 2335568
Q ss_pred CcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecC
Q 016199 238 NGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATE 301 (393)
Q Consensus 238 ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~ 301 (393)
+.+++|+||++|.. .+..+.|..||+-.. .....+. .+.-+-++..+++|.+....+..
T Consensus 580 td~~FS~DgrWlis-asmD~tIr~wDlpt~--~lID~~~--vd~~~~sls~SPngD~LAT~Hvd 638 (910)
T KOG1539|consen 580 TDMTFSPDGRWLIS-ASMDSTIRTWDLPTG--TLIDGLL--VDSPCTSLSFSPNGDFLATVHVD 638 (910)
T ss_pred eeeEeCCCCcEEEE-eecCCcEEEEeccCc--ceeeeEe--cCCcceeeEECCCCCEEEEEEec
Confidence 99999999987755 456789999998421 1222222 22235678888999888776654
No 103
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.68 E-value=0.012 Score=53.36 Aligned_cols=64 Identities=19% Similarity=0.213 Sum_probs=45.2
Q ss_pred EEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCC-Cc-eeeeEECC-CCCCCCceEEEEEeCCCceEEEeCCc
Q 016199 89 LYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTG-GR-PLGIAFAN-SDPDADRITMIVADAYKGLLKISGNS 163 (393)
Q Consensus 89 a~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~-~~-p~gl~~d~-~G~~~~~~~L~v~~~~~gl~~id~~g 163 (393)
..|.+++.+|.|++|+..+.+|+.+.. -.|...+ +. -.+-+.++ ++ .||++...+.++.++++.
T Consensus 100 ~~d~~~glIycgshd~~~yalD~~~~~-----cVykskcgG~~f~sP~i~~g~~------sly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 100 QCDFDGGLIYCGSHDGNFYALDPKTYG-----CVYKSKCGGGTFVSPVIAPGDG------SLYAAITAGAVLAVTKNP 166 (354)
T ss_pred EEcCCCceEEEecCCCcEEEecccccc-----eEEecccCCceeccceecCCCc------eEEEEeccceEEEEccCC
Confidence 478888999999999999999987642 2222222 22 23445555 77 899998888888887654
No 104
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.67 E-value=0.0046 Score=56.86 Aligned_cols=158 Identities=16% Similarity=0.222 Sum_probs=102.4
Q ss_pred cccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE--EecCccCCCcEEEcCCCCEEEEEeC
Q 016199 177 KLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV--LVSDLYFANGVVLSPDQTHLVYCET 254 (393)
Q Consensus 177 ~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~--~~~~l~~~ngi~~s~dg~~l~v~~~ 254 (393)
.|..|+.+..+|.||-++.. .+...|.++|++++++.. -...-.|.-|+++..| .+|.-..
T Consensus 45 aFTQGL~~~~~g~LyESTG~---------------yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLTW 107 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGL---------------YGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLTW 107 (264)
T ss_dssp -EEEEEEEEETTEEEEEECS---------------TTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEES
T ss_pred ccCccEEecCCCEEEEeCCC---------------CCcEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEEe
Confidence 56789999889999998632 234579999999987643 3455678899998854 6888888
Q ss_pred CCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCC
Q 016199 255 SMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKS 334 (393)
Q Consensus 255 ~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 334 (393)
..+..++||.+. ......|. .++-.-|++.|. ..+|++....
T Consensus 108 k~~~~f~yd~~t--l~~~~~~~--y~~EGWGLt~dg-~~Li~SDGS~--------------------------------- 149 (264)
T PF05096_consen 108 KEGTGFVYDPNT--LKKIGTFP--YPGEGWGLTSDG-KRLIMSDGSS--------------------------------- 149 (264)
T ss_dssp SSSEEEEEETTT--TEEEEEEE---SSS--EEEECS-SCEEEE-SSS---------------------------------
T ss_pred cCCeEEEEcccc--ceEEEEEe--cCCcceEEEcCC-CEEEEECCcc---------------------------------
Confidence 889999999753 23333342 334456788763 3588876643
Q ss_pred CceEEEECCC-CcEEEEeeC--CC--CCccEEEEEeCCEEEEEecCCCeEEEEeCCCCCCCC
Q 016199 335 SSGVFIVDLD-GKPIAHYYD--PE--MSLISSAIKIGDHLYCGSVHHRGILHLDVNQHPARA 391 (393)
Q Consensus 335 ~~~v~~~d~~-g~~~~~~~d--~~--~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~~~~~~ 391 (393)
.|..+||+ -++...+.- .. ...+....-.+|.||.--+..+.|.++|++....+.
T Consensus 150 --~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~V~~ 209 (264)
T PF05096_consen 150 --RLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPETGKVVG 209 (264)
T ss_dssp --EEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT-BEEE
T ss_pred --ceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCeEEE
Confidence 47888874 455555442 11 444445555789999999999999999987765543
No 105
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=97.66 E-value=0.0085 Score=56.93 Aligned_cols=104 Identities=14% Similarity=0.095 Sum_probs=58.6
Q ss_pred cCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEEC-----CCCCCCCceEEEEEeCC
Q 016199 79 YGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFA-----NSDPDADRITMIVADAY 153 (393)
Q Consensus 79 ~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d-----~~G~~~~~~~L~v~~~~ 153 (393)
.|....--+++++|||+.|-.|+.+|.|..|++++++-. -..+........+|++. +.. ++++....
T Consensus 154 KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~--g~~l~gH~K~It~Lawep~hl~p~~------r~las~sk 225 (480)
T KOG0271|consen 154 KGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQI--GRALRGHKKWITALAWEPLHLVPPC------RRLASSSK 225 (480)
T ss_pred cCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcc--cccccCcccceeEEeecccccCCCc------cceecccC
Confidence 344566778999999998888899999999999876410 11111111224455554 344 44444333
Q ss_pred C-ceEEEeCCc-eEEEeeccCCccccccccEEEcCCCcEEEE
Q 016199 154 K-GLLKISGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFT 193 (393)
Q Consensus 154 ~-gl~~id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~t 193 (393)
. .+...|... ..++. ..|.. ..+..+....+|.||-+
T Consensus 226 Dg~vrIWd~~~~~~~~~--lsgHT-~~VTCvrwGG~gliySg 264 (480)
T KOG0271|consen 226 DGSVRIWDTKLGTCVRT--LSGHT-ASVTCVRWGGEGLIYSG 264 (480)
T ss_pred CCCEEEEEccCceEEEE--eccCc-cceEEEEEcCCceEEec
Confidence 3 366667654 22221 11211 22446666677777766
No 106
>PRK13684 Ycf48-like protein; Provisional
Probab=97.65 E-value=0.065 Score=51.80 Aligned_cols=178 Identities=11% Similarity=0.067 Sum_probs=85.8
Q ss_pred CCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecC----CCceeeeEECCCCCCCCceEEEEEeCCCceEEE
Q 016199 84 GPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINT----GGRPLGIAFANSDPDADRITMIVADAYKGLLKI 159 (393)
Q Consensus 84 ~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~----~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~i 159 (393)
...+|+|.++.+ .|+....|.|++=.-.+.. ++..... ......+.+.. + ..|++...+.|++-
T Consensus 47 ~l~~v~F~d~~~-g~avG~~G~il~T~DgG~t----W~~~~~~~~~~~~~l~~v~~~~-~------~~~~~G~~g~i~~S 114 (334)
T PRK13684 47 NLLDIAFTDPNH-GWLVGSNRTLLETNDGGET----WEERSLDLPEENFRLISISFKG-D------EGWIVGQPSLLLHT 114 (334)
T ss_pred ceEEEEEeCCCc-EEEEECCCEEEEEcCCCCC----ceECccCCcccccceeeeEEcC-C------cEEEeCCCceEEEE
Confidence 344577775554 5544456777764433333 4443211 12245677764 3 46766444445554
Q ss_pred eCCce--EEEee--ccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCc-
Q 016199 160 SGNST--VLLTD--EAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDL- 234 (393)
Q Consensus 160 d~~g~--~~l~~--~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l- 234 (393)
+-.|. +.+.. ...+. +..+....++.+|+. ...|.|++-+-.++..+.+..+.
T Consensus 115 ~DgG~tW~~~~~~~~~~~~----~~~i~~~~~~~~~~~------------------g~~G~i~~S~DgG~tW~~~~~~~~ 172 (334)
T PRK13684 115 TDGGKNWTRIPLSEKLPGS----PYLITALGPGTAEMA------------------TNVGAIYRTTDGGKNWEALVEDAA 172 (334)
T ss_pred CCCCCCCeEccCCcCCCCC----ceEEEEECCCcceee------------------eccceEEEECCCCCCceeCcCCCc
Confidence 33332 22211 11121 223333334455555 23466777765545555544332
Q ss_pred cCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199 235 YFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA 299 (393)
Q Consensus 235 ~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~ 299 (393)
...+++.+.+++..+.+. .++.+++-.-++. ...+...........++.+.++|++|+...
T Consensus 173 g~~~~i~~~~~g~~v~~g--~~G~i~~s~~~gg--~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~ 233 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVS--SRGNFYSTWEPGQ--TAWTPHQRNSSRRLQSMGFQPDGNLWMLAR 233 (334)
T ss_pred ceEEEEEECCCCeEEEEe--CCceEEEEcCCCC--CeEEEeeCCCcccceeeeEcCCCCEEEEec
Confidence 335678888887544333 3466666421221 111111111112245677888899988755
No 107
>PTZ00420 coronin; Provisional
Probab=97.63 E-value=0.092 Score=54.18 Aligned_cols=159 Identities=13% Similarity=0.022 Sum_probs=92.7
Q ss_pred CccCCCceEEEecC-CCEEEEEecCCeEEEEEcCCCCCc-----ceeeeeecCCCceeeeEECCCCCCCCceE-EEEEeC
Q 016199 80 GVLKGPEDLLYDAH-SKLIYTGCEDGWIKRVTLNDSPAD-----SLVHNWINTGGRPLGIAFANSDPDADRIT-MIVADA 152 (393)
Q Consensus 80 g~~~~Pe~ia~d~~-g~~L~~~~~~g~I~~~~~~~~~~~-----~~~~~~~~~~~~p~gl~~d~~G~~~~~~~-L~v~~~ 152 (393)
|......+++|+|+ ++.|.+++.|+.|..|+...+... .....+.........+++++++ . ++++..
T Consensus 72 gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g------~~iLaSgS 145 (568)
T PTZ00420 72 GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMN------YYIMCSSG 145 (568)
T ss_pred CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCC------CeEEEEEe
Confidence 33345667899986 677888899999999997643100 0011222234567889999988 4 443333
Q ss_pred -CCceEEEeCCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE
Q 016199 153 -YKGLLKISGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL 230 (393)
Q Consensus 153 -~~gl~~id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~ 230 (393)
++.|..+|... .....-... ..+..+.++++|.++++. ...+.|..||+.+++...-
T Consensus 146 ~DgtIrIWDl~tg~~~~~i~~~----~~V~SlswspdG~lLat~-----------------s~D~~IrIwD~Rsg~~i~t 204 (568)
T PTZ00420 146 FDSFVNIWDIENEKRAFQINMP----KKLSSLKWNIKGNLLSGT-----------------CVGKHMHIIDPRKQEIASS 204 (568)
T ss_pred CCCeEEEEECCCCcEEEEEecC----CcEEEEEECCCCCEEEEE-----------------ecCCEEEEEECCCCcEEEE
Confidence 44466778654 211111111 235688999999887763 2345788999987754332
Q ss_pred ecC-ccCCCc-----EEEcCCCCEEEEEeCCC---CeEEEEEec
Q 016199 231 VSD-LYFANG-----VVLSPDQTHLVYCETSM---RRCRKFYIK 265 (393)
Q Consensus 231 ~~~-l~~~ng-----i~~s~dg~~l~v~~~~~---~ri~~~~~~ 265 (393)
... ....+. ..+++|++.++.+.... ..|..|++.
T Consensus 205 l~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr 248 (568)
T PTZ00420 205 FHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLK 248 (568)
T ss_pred EecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECC
Confidence 211 111111 12357877666655443 358888875
No 108
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=97.60 E-value=0.019 Score=54.25 Aligned_cols=159 Identities=16% Similarity=0.114 Sum_probs=94.1
Q ss_pred EecCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeec-CCCceeeeEECCCCCCCCceEEEEEeCCCc
Q 016199 77 VGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWIN-TGGRPLGIAFANSDPDADRITMIVADAYKG 155 (393)
Q Consensus 77 l~~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~-~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g 155 (393)
+..|.+.+-.++++||.+..+-+|+.|+.|-.||..+++ .+.... .-....++++.+--+ .++-+..+.-
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~----LkltltGhi~~vr~vavS~rHp-----YlFs~gedk~ 216 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ----LKLTLTGHIETVRGVAVSKRHP-----YLFSAGEDKQ 216 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCe----EEEeecchhheeeeeeecccCc-----eEEEecCCCe
Confidence 346777888999999987655566779999999999876 332221 234567888876542 3444433444
Q ss_pred eEEEeCCceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC-c
Q 016199 156 LLKISGNSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD-L 234 (393)
Q Consensus 156 l~~id~~g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~-l 234 (393)
|-.+|....+++. .+-|. +..+..++..|.-++.++. .....+..+|..++.....+.+ -
T Consensus 217 VKCwDLe~nkvIR-~YhGH-lS~V~~L~lhPTldvl~t~-----------------grDst~RvWDiRtr~~V~~l~GH~ 277 (460)
T KOG0285|consen 217 VKCWDLEYNKVIR-HYHGH-LSGVYCLDLHPTLDVLVTG-----------------GRDSTIRVWDIRTRASVHVLSGHT 277 (460)
T ss_pred eEEEechhhhhHH-Hhccc-cceeEEEeccccceeEEec-----------------CCcceEEEeeecccceEEEecCCC
Confidence 6667765422221 12221 3345567777777777773 2223455567766544333333 2
Q ss_pred cCCCcEEEc-CCCCEEEEEeCCCCeEEEEEec
Q 016199 235 YFANGVVLS-PDQTHLVYCETSMRRCRKFYIK 265 (393)
Q Consensus 235 ~~~ngi~~s-~dg~~l~v~~~~~~ri~~~~~~ 265 (393)
...+.+.+- -|++ +++.+..+.|..||+.
T Consensus 278 ~~V~~V~~~~~dpq--vit~S~D~tvrlWDl~ 307 (460)
T KOG0285|consen 278 NPVASVMCQPTDPQ--VITGSHDSTVRLWDLR 307 (460)
T ss_pred CcceeEEeecCCCc--eEEecCCceEEEeeec
Confidence 223334433 2442 3667778899999985
No 109
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.59 E-value=0.00085 Score=59.81 Aligned_cols=110 Identities=17% Similarity=0.224 Sum_probs=69.8
Q ss_pred EecCCCEEEEEec----------CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeC-CCce--
Q 016199 90 YDAHSKLIYTGCE----------DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADA-YKGL-- 156 (393)
Q Consensus 90 ~d~~g~~L~~~~~----------~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~-~~gl-- 156 (393)
+||+|+ .|.|+. .|.++++-+.. + ++.+-..-+-++||+.|.+. +.+|+.|+ ..-+
T Consensus 116 vdP~Gr-yy~GtMad~~~~le~~~g~Ly~~~~~h-~----v~~i~~~v~IsNgl~Wd~d~-----K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 116 VDPDGR-YYGGTMADFGDDLEPIGGELYSWLAGH-Q----VELIWNCVGISNGLAWDSDA-----KKFYYIDSLNYEVDA 184 (310)
T ss_pred cCCCCc-eeeeeeccccccccccccEEEEeccCC-C----ceeeehhccCCccccccccC-----cEEEEEccCceEEee
Confidence 788996 688873 24455554443 3 44444434568999999776 36788776 3345
Q ss_pred EEEeCC-c----eEEEeecc--CCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeE
Q 016199 157 LKISGN-S----TVLLTDEA--EGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKET 227 (393)
Q Consensus 157 ~~id~~-g----~~~l~~~~--~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~ 227 (393)
+.+|-. | ...+.+.. +...-..|+++++|.+|+||++. -..++|+++||.||++
T Consensus 185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~-----------------~ng~~V~~~dp~tGK~ 245 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVAT-----------------FNGGTVQKVDPTTGKI 245 (310)
T ss_pred eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEE-----------------ecCcEEEEECCCCCcE
Confidence 333333 3 12222211 11122458999999999999996 2357899999999875
No 110
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=97.59 E-value=0.043 Score=51.50 Aligned_cols=175 Identities=18% Similarity=0.226 Sum_probs=97.1
Q ss_pred cCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEe-CCc------------eEEEe--eccCCccccccccEEEcCCCc
Q 016199 125 NTGGRPLGIAFANSDPDADRITMIVADAYKGLLKIS-GNS------------TVLLT--DEAEGQKFKLTDGVDVADDGM 189 (393)
Q Consensus 125 ~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id-~~g------------~~~l~--~~~~g~~~~~~~~l~~d~dG~ 189 (393)
....+|.|++.+++ +||++. ...|.++- .+. .-.+. ..+.|. -.+|+|++ .++.
T Consensus 46 r~F~r~MGl~~~~~-------~l~~~t-~~qiw~f~~~~n~l~~~~~~~~~D~~yvPr~~~~TGd--idiHdia~-~~~~ 114 (335)
T TIGR03032 46 RTFPRPMGLAVSPQ-------SLTLGT-RYQLWRFANVDNLLPAGQTHPGYDRLYVPRASYVTGD--IDAHDLAL-GAGR 114 (335)
T ss_pred eccCccceeeeeCC-------eEEEEE-cceeEEcccccccccccccCCCCCeEEeeeeeeeccC--cchhheee-cCCc
Confidence 33568999999865 599995 44566661 111 00010 011121 23688988 6778
Q ss_pred EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCC--------eEEEE-ecCccCCCcEEEcCCCCEEEEEeCCCCeE-
Q 016199 190 IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTK--------ETKVL-VSDLYFANGVVLSPDQTHLVYCETSMRRC- 259 (393)
Q Consensus 190 l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~--------~~~~~-~~~l~~~ngi~~s~dg~~l~v~~~~~~ri- 259 (393)
+||.+. .-.-|-.+++.-. -++.+ ..+-.+-||+|+. ||+--||+..+..-.
T Consensus 115 l~fVNT-----------------~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~-~g~p~yVTa~~~sD~~ 176 (335)
T TIGR03032 115 LLFVNT-----------------LFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALD-DGEPRYVTALSQSDVA 176 (335)
T ss_pred EEEEEC-----------------cceeEEEECCCCccccccCCccccccCccCceeecceeee-CCeEEEEEEeeccCCc
Confidence 998863 2334555555321 11222 3345778999994 777788776543211
Q ss_pred --E---------EEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCC
Q 016199 260 --R---------KFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGM 328 (393)
Q Consensus 260 --~---------~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~ 328 (393)
+ .+|+.. -+++++++. +|.+-+.- +|++|+.....
T Consensus 177 ~gWR~~~~~gG~vidv~s-----~evl~~GLs-mPhSPRWh-dgrLwvldsgt--------------------------- 222 (335)
T TIGR03032 177 DGWREGRRDGGCVIDIPS-----GEVVASGLS-MPHSPRWY-QGKLWLLNSGR--------------------------- 222 (335)
T ss_pred ccccccccCCeEEEEeCC-----CCEEEcCcc-CCcCCcEe-CCeEEEEECCC---------------------------
Confidence 1 133321 133444443 56665553 69999987754
Q ss_pred CCCCCCCceEEEECCC-CcEEEEeeCCC-CCccEEEEEeCCEEEEE
Q 016199 329 PPMGKSSSGVFIVDLD-GKPIAHYYDPE-MSLISSAIKIGDHLYCG 372 (393)
Q Consensus 329 ~~~~~~~~~v~~~d~~-g~~~~~~~d~~-~~~~~~~~~~~g~Lyig 372 (393)
+.+.++|++ |+......-+. ...+.+ .++.+++|
T Consensus 223 -------Gev~~vD~~~G~~e~Va~vpG~~rGL~f---~G~llvVg 258 (335)
T TIGR03032 223 -------GELGYVDPQAGKFQPVAFLPGFTRGLAF---AGDFAFVG 258 (335)
T ss_pred -------CEEEEEcCCCCcEEEEEECCCCCcccce---eCCEEEEE
Confidence 569999997 76655555444 222222 24555555
No 111
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=97.57 E-value=0.0066 Score=54.62 Aligned_cols=149 Identities=12% Similarity=0.071 Sum_probs=98.6
Q ss_pred CceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCce
Q 016199 85 PEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNST 164 (393)
Q Consensus 85 Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g~ 164 (393)
-..+.|-...+.+..++.++.|..||..++. .+..+ .....+..+-+..+| +++....+.+|..+|++.+
T Consensus 146 Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt---~v~sL-~~~s~VtSlEvs~dG------~ilTia~gssV~Fwdaksf 215 (334)
T KOG0278|consen 146 IRTVLWCHEDKCILSSADDKTVRLWDHRTGT---EVQSL-EFNSPVTSLEVSQDG------RILTIAYGSSVKFWDAKSF 215 (334)
T ss_pred ceeEEEeccCceEEeeccCCceEEEEeccCc---EEEEE-ecCCCCcceeeccCC------CEEEEecCceeEEeccccc
Confidence 3345555555556666778889999988765 13333 334567889999999 8777766777888888764
Q ss_pred EEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE-ecC-ccCCCcEEE
Q 016199 165 VLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL-VSD-LYFANGVVL 242 (393)
Q Consensus 165 ~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~-~~~-l~~~ngi~~ 242 (393)
..+... . .| ..++.-...|+..+|++- .....+|+||-.|++-... ..+ ......+.+
T Consensus 216 ~~lKs~-k-~P-~nV~SASL~P~k~~fVaG-----------------ged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrF 275 (334)
T KOG0278|consen 216 GLLKSY-K-MP-CNVESASLHPKKEFFVAG-----------------GEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRF 275 (334)
T ss_pred cceeec-c-Cc-cccccccccCCCceEEec-----------------CcceEEEEEeccCCceeeecccCCCCceEEEEE
Confidence 333211 1 01 113344456777888883 4456799999988864443 233 344588999
Q ss_pred cCCCCEEEEEeCCCCeEEEEEe
Q 016199 243 SPDQTHLVYCETSMRRCRKFYI 264 (393)
Q Consensus 243 s~dg~~l~v~~~~~~ri~~~~~ 264 (393)
+||| .+|.+.+..+.|..|..
T Consensus 276 SPdG-E~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 276 SPDG-ELYASGSEDGTIRLWQT 296 (334)
T ss_pred CCCC-ceeeccCCCceEEEEEe
Confidence 9999 58999988887766654
No 112
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=97.55 E-value=0.0025 Score=62.01 Aligned_cols=190 Identities=11% Similarity=0.140 Sum_probs=122.6
Q ss_pred CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCC
Q 016199 83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGN 162 (393)
Q Consensus 83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~ 162 (393)
..-.++++..+|..+..++.|+.|..||.++++ ...-...+..|..+.+.+++. +.+++|.....|..+|..
T Consensus 259 k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~----~~~~f~~~~~~~cvkf~pd~~----n~fl~G~sd~ki~~wDiR 330 (503)
T KOG0282|consen 259 KPVRDASFNNCGTSFLSASFDRFLKLWDTETGQ----VLSRFHLDKVPTCVKFHPDNQ----NIFLVGGSDKKIRQWDIR 330 (503)
T ss_pred hhhhhhhccccCCeeeeeecceeeeeeccccce----EEEEEecCCCceeeecCCCCC----cEEEEecCCCcEEEEecc
Confidence 445668899999888888899999999999886 554445567789999998762 135555556678888864
Q ss_pred ceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE-ec-CccCCCcE
Q 016199 163 STVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL-VS-DLYFANGV 240 (393)
Q Consensus 163 g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~-~~-~l~~~ngi 240 (393)
..+ +..++ +..+..+++|.+-++|.-+++. +..+.+..++-.......+ +. ....--.+
T Consensus 331 s~k-vvqeY-d~hLg~i~~i~F~~~g~rFiss-----------------SDdks~riWe~~~~v~ik~i~~~~~hsmP~~ 391 (503)
T KOG0282|consen 331 SGK-VVQEY-DRHLGAILDITFVDEGRRFISS-----------------SDDKSVRIWENRIPVPIKNIADPEMHTMPCL 391 (503)
T ss_pred chH-HHHHH-HhhhhheeeeEEccCCceEeee-----------------ccCccEEEEEcCCCccchhhcchhhccCcce
Confidence 311 11122 2234567889999999777774 2223455555443332221 11 12333467
Q ss_pred EEcCCCCEEEEEeCCCCeEEEEEecCC-CCcceeeeec-cCCCCCCeEEECCCCCEEEEEec
Q 016199 241 VLSPDQTHLVYCETSMRRCRKFYIKGK-NAGRVEKFIE-TLPGLPDNIRYDGEGHYLIALAT 300 (393)
Q Consensus 241 ~~s~dg~~l~v~~~~~~ri~~~~~~g~-~~~~~~~~~~-~l~g~P~~i~~d~~G~lwva~~~ 300 (393)
++.|++. .+.+.+..++|..|..... +....+.|.. ..+|++..+.+++||++.+.-..
T Consensus 392 ~~~P~~~-~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGds 452 (503)
T KOG0282|consen 392 TLHPNGK-WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDS 452 (503)
T ss_pred ecCCCCC-eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecC
Confidence 7888885 5678888999999886532 2222333331 24678889999999998776543
No 113
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.53 E-value=0.068 Score=50.32 Aligned_cols=109 Identities=17% Similarity=0.217 Sum_probs=63.9
Q ss_pred CCceeeeEECCCCCCCCceEEEEEeCCCc--eEEEeCCc--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchh
Q 016199 127 GGRPLGIAFANSDPDADRITMIVADAYKG--LLKISGNS--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLR 202 (393)
Q Consensus 127 ~~~p~gl~~d~~G~~~~~~~L~v~~~~~g--l~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~ 202 (393)
..+.++++.+++.+ ...+..-.-| ++.+|..+ ........++..| --.-++++||++.++....
T Consensus 4 P~RgH~~a~~p~~~-----~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHF--yGHg~fs~dG~~LytTEnd----- 71 (305)
T PF07433_consen 4 PARGHGVAAHPTRP-----EAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHF--YGHGVFSPDGRLLYTTEND----- 71 (305)
T ss_pred CccccceeeCCCCC-----eEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEE--ecCEEEcCCCCEEEEeccc-----
Confidence 45778888888441 3332223334 66778755 2222223334333 1123689999655553211
Q ss_pred hheehhcccCCCcEEEEEeCCCC--eEEEEecCccCCCcEEEcCCCCEEEEEeC
Q 016199 203 EYILDIFEGKPNGRLLSFDPVTK--ETKVLVSDLYFANGVVLSPDQTHLVYCET 254 (393)
Q Consensus 203 ~~~~~~~e~~~~g~l~~~d~~t~--~~~~~~~~l~~~ngi~~s~dg~~l~v~~~ 254 (393)
. .++.|.|-.||...+ ++.++.+.-.-|+-+.+.+||+.|+|++-
T Consensus 72 ------~-~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANG 118 (305)
T PF07433_consen 72 ------Y-ETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANG 118 (305)
T ss_pred ------c-CCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcC
Confidence 1 245688899998732 23334455566999999999999999863
No 114
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.49 E-value=0.073 Score=48.47 Aligned_cols=140 Identities=16% Similarity=0.079 Sum_probs=78.4
Q ss_pred CCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc-eEEEeeccC
Q 016199 94 SKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS-TVLLTDEAE 172 (393)
Q Consensus 94 g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g-~~~l~~~~~ 172 (393)
...+|+|++.+++..+|++.+. ...-...+.|..+-+.--.+ .+.++=..+++|.++-+. .+.......
T Consensus 23 kT~v~igSHs~~~~avd~~sG~----~~We~ilg~RiE~sa~vvgd------fVV~GCy~g~lYfl~~~tGs~~w~f~~~ 92 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGN----LIWEAILGVRIECSAIVVGD------FVVLGCYSGGLYFLCVKTGSQIWNFVIL 92 (354)
T ss_pred ceEEEEecCCceEEEecCCCCc----EEeehhhCceeeeeeEEECC------EEEEEEccCcEEEEEecchhheeeeeeh
Confidence 3478999999999999998875 33333334554433332223 566665556788887544 222211111
Q ss_pred CccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEe-cCccCCCcEEEcCCCCEEE
Q 016199 173 GQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLV-SDLYFANGVVLSPDQTHLV 250 (393)
Q Consensus 173 g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~-~~l~~~ngi~~s~dg~~l~ 250 (393)
+..- . .-..|.++ .||.+ +-++.+|.+|+++..-..-. -+...-.+-++.+-...||
T Consensus 93 ~~vk--~-~a~~d~~~glIycg------------------shd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly 151 (354)
T KOG4649|consen 93 ETVK--V-RAQCDFDGGLIYCG------------------SHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLY 151 (354)
T ss_pred hhhc--c-ceEEcCCCceEEEe------------------cCCCcEEEecccccceEEecccCCceeccceecCCCceEE
Confidence 1110 1 12466665 78888 34567899998765432111 1111122334566333788
Q ss_pred EEeCCCCeEEEEEec
Q 016199 251 YCETSMRRCRKFYIK 265 (393)
Q Consensus 251 v~~~~~~ri~~~~~~ 265 (393)
++-+ .+++.+...+
T Consensus 152 ~a~t-~G~vlavt~~ 165 (354)
T KOG4649|consen 152 AAIT-AGAVLAVTKN 165 (354)
T ss_pred EEec-cceEEEEccC
Confidence 8765 6788888764
No 115
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.47 E-value=0.089 Score=49.01 Aligned_cols=179 Identities=13% Similarity=0.122 Sum_probs=102.9
Q ss_pred EEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCceEEE
Q 016199 88 LLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNSTVLL 167 (393)
Q Consensus 88 ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g~~~l 167 (393)
+|+ +|..+-.|+.|.+|..||..... ....+....+....+.|.+.- +...|+-|..++.|..++...-..+
T Consensus 49 vAV--s~~~~aSGssDetI~IYDm~k~~---qlg~ll~HagsitaL~F~~~~---S~shLlS~sdDG~i~iw~~~~W~~~ 120 (362)
T KOG0294|consen 49 LAV--SGPYVASGSSDETIHIYDMRKRK---QLGILLSHAGSITALKFYPPL---SKSHLLSGSDDGHIIIWRVGSWELL 120 (362)
T ss_pred EEe--cceeEeccCCCCcEEEEeccchh---hhcceeccccceEEEEecCCc---chhheeeecCCCcEEEEEcCCeEEe
Confidence 455 45555556668899999987543 123333445778888887642 1114666643444666665442112
Q ss_pred eeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCC
Q 016199 168 TDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQT 247 (393)
Q Consensus 168 ~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~ 247 (393)
....+.. ..+++|++.|.|.|-++- .+.+.+.-+|..+|+......--..+.-|.+++.|+
T Consensus 121 -~slK~H~-~~Vt~lsiHPS~KLALsV-----------------g~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd 181 (362)
T KOG0294|consen 121 -KSLKAHK-GQVTDLSIHPSGKLALSV-----------------GGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGD 181 (362)
T ss_pred -eeecccc-cccceeEecCCCceEEEE-----------------cCCceeeeehhhcCccceeeccCCcceeeEEcCCCC
Confidence 1222222 237899999999988874 223345556666665443332223455699999999
Q ss_pred EEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199 248 HLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA 299 (393)
Q Consensus 248 ~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~ 299 (393)
+.++.. +++|-.|.++.-+ .-..+. .|..+-++.++..+.+.+|..
T Consensus 182 ~F~v~~--~~~i~i~q~d~A~---v~~~i~-~~~r~l~~~~l~~~~L~vG~d 227 (362)
T KOG0294|consen 182 HFVVSG--RNKIDIYQLDNAS---VFREIE-NPKRILCATFLDGSELLVGGD 227 (362)
T ss_pred EEEEEe--ccEEEEEecccHh---Hhhhhh-ccccceeeeecCCceEEEecC
Confidence 777764 4788888775321 111121 122345566676666777654
No 116
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=97.44 E-value=0.0075 Score=57.27 Aligned_cols=198 Identities=17% Similarity=0.188 Sum_probs=116.3
Q ss_pred ccCceEEecCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeee-----------EECCCC
Q 016199 71 LQGSEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGI-----------AFANSD 139 (393)
Q Consensus 71 l~~~~~l~~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl-----------~~d~~G 139 (393)
+..+.....|....-.++.+..+| .+|.|+.|++|..|+..++. ..+.+.......+.| +|++.|
T Consensus 236 ~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~---~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~ 311 (480)
T KOG0271|consen 236 LGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGK---LCRELKGHAHWVNHLALSTDYVLRTGAFDHTG 311 (480)
T ss_pred CceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchh---HHHhhcccchheeeeeccchhhhhcccccccc
Confidence 444566667766666778887776 79999999999999876643 011110001111111 122222
Q ss_pred CCC--------------------CceEEEEEeCCCceEEEeCCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCc
Q 016199 140 PDA--------------------DRITMIVADAYKGLLKISGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNK 198 (393)
Q Consensus 140 ~~~--------------------~~~~L~v~~~~~gl~~id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~ 198 (393)
..+ +.++|.-|..+.-++..++.. .+.+. ...|. ...+|.+.++|||+. ++.++.
T Consensus 312 ~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~-rmtgH-q~lVn~V~fSPd~r~-IASaSF- 387 (480)
T KOG0271|consen 312 RKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPIT-RMTGH-QALVNHVSFSPDGRY-IASASF- 387 (480)
T ss_pred ccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchh-hhhch-hhheeeEEECCCccE-EEEeec-
Confidence 100 002455554344567776643 21221 11222 245789999999964 554443
Q ss_pred cchhhheehhcccCCCcEEEEEeCCCCeEEE-EecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeec
Q 016199 199 YYLREYILDIFEGKPNGRLLSFDPVTKETKV-LVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIE 277 (393)
Q Consensus 199 ~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~-~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~ 277 (393)
...|--+|..+|+.-. +........-++++.|. .|+|+.+....|-.|++..++ +..
T Consensus 388 ---------------DkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDs-RLlVS~SkDsTLKvw~V~tkK------l~~ 445 (480)
T KOG0271|consen 388 ---------------DKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADS-RLLVSGSKDSTLKVWDVRTKK------LKQ 445 (480)
T ss_pred ---------------ccceeeeeCCCcchhhhhhhccceeEEEEeccCc-cEEEEcCCCceEEEEEeeeee------ecc
Confidence 2346666766776533 33345556789999998 588999999999999986432 344
Q ss_pred cCCCCCCeEE---ECCCCCEEEEE
Q 016199 278 TLPGLPDNIR---YDGEGHYLIAL 298 (393)
Q Consensus 278 ~l~g~P~~i~---~d~~G~lwva~ 298 (393)
.+||..|.+. -.+||..-.+.
T Consensus 446 DLpGh~DEVf~vDwspDG~rV~sg 469 (480)
T KOG0271|consen 446 DLPGHADEVFAVDWSPDGQRVASG 469 (480)
T ss_pred cCCCCCceEEEEEecCCCceeecC
Confidence 6888887754 36788765543
No 117
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.44 E-value=0.0095 Score=58.12 Aligned_cols=132 Identities=14% Similarity=0.131 Sum_probs=89.7
Q ss_pred EEEEEecCC-eEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc--eEEEeeccC
Q 016199 96 LIYTGCEDG-WIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS--TVLLTDEAE 172 (393)
Q Consensus 96 ~L~~~~~~g-~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g--~~~l~~~~~ 172 (393)
-+.+|+.+| .+..++.+++. ++.+...-+....+..+++| +.+.+++....|+.+|.+. .+.+-..
T Consensus 373 ~~vigt~dgD~l~iyd~~~~e----~kr~e~~lg~I~av~vs~dG-----K~~vvaNdr~el~vididngnv~~idkS-- 441 (668)
T COG4946 373 GDVIGTNDGDKLGIYDKDGGE----VKRIEKDLGNIEAVKVSPDG-----KKVVVANDRFELWVIDIDNGNVRLIDKS-- 441 (668)
T ss_pred ceEEeccCCceEEEEecCCce----EEEeeCCccceEEEEEcCCC-----cEEEEEcCceEEEEEEecCCCeeEeccc--
Confidence 366788877 78888888776 77776666788999999999 2477776666788888654 4443222
Q ss_pred CccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEE
Q 016199 173 GQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYC 252 (393)
Q Consensus 173 g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~ 252 (393)
....+.+++++++++ |++ +.+-++.-+..+-.||..++++-.+.+...+-..-+++||++.||+-
T Consensus 442 --~~~lItdf~~~~nsr-~iA------------YafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 442 --EYGLITDFDWHPNSR-WIA------------YAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred --ccceeEEEEEcCCce-eEE------------EecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEE
Confidence 223466888888875 444 11123333456888999887776665554444556789999999886
Q ss_pred e
Q 016199 253 E 253 (393)
Q Consensus 253 ~ 253 (393)
.
T Consensus 507 s 507 (668)
T COG4946 507 S 507 (668)
T ss_pred e
Confidence 5
No 118
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.44 E-value=0.16 Score=52.60 Aligned_cols=177 Identities=12% Similarity=0.174 Sum_probs=105.6
Q ss_pred EEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeec--CCCceeeeEECCCCCCCCceEEEEEeCCCc-eEEEeCCc
Q 016199 88 LLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWIN--TGGRPLGIAFANSDPDADRITMIVADAYKG-LLKISGNS 163 (393)
Q Consensus 88 ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~--~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g-l~~id~~g 163 (393)
+++...|+.|-+|+. -|.+..|+.+... ..+.. ...+...++..+|| .+.++.+..| |-.+|...
T Consensus 313 ~~~N~tGDWiA~g~~klgQLlVweWqsEs-----YVlKQQgH~~~i~~l~YSpDg------q~iaTG~eDgKVKvWn~~S 381 (893)
T KOG0291|consen 313 VSFNSTGDWIAFGCSKLGQLLVWEWQSES-----YVLKQQGHSDRITSLAYSPDG------QLIATGAEDGKVKVWNTQS 381 (893)
T ss_pred EEecccCCEEEEcCCccceEEEEEeeccc-----eeeeccccccceeeEEECCCC------cEEEeccCCCcEEEEeccC
Confidence 445445554444443 3566666655432 11111 13467889999999 7777766555 66667644
Q ss_pred -eE--EEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCC-eEEEEecCc-cCCC
Q 016199 164 -TV--LLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTK-ETKVLVSDL-YFAN 238 (393)
Q Consensus 164 -~~--~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~-~~~~~~~~l-~~~n 238 (393)
.. .+... ...+.++.+...|+..++. +-.|+|-.+|.+.. ..+++...- ....
T Consensus 382 gfC~vTFteH-----ts~Vt~v~f~~~g~~llss-----------------SLDGtVRAwDlkRYrNfRTft~P~p~Qfs 439 (893)
T KOG0291|consen 382 GFCFVTFTEH-----TSGVTAVQFTARGNVLLSS-----------------SLDGTVRAWDLKRYRNFRTFTSPEPIQFS 439 (893)
T ss_pred ceEEEEeccC-----CCceEEEEEEecCCEEEEe-----------------ecCCeEEeeeecccceeeeecCCCceeee
Confidence 32 22222 2335688899999988884 34678888987643 233333221 2246
Q ss_pred cEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEec
Q 016199 239 GVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALAT 300 (393)
Q Consensus 239 gi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~ 300 (393)
.++++|.|+.+.........|+.|.++ +|+......+..|--.+++++++|...++..-
T Consensus 440 cvavD~sGelV~AG~~d~F~IfvWS~q---TGqllDiLsGHEgPVs~l~f~~~~~~LaS~SW 498 (893)
T KOG0291|consen 440 CVAVDPSGELVCAGAQDSFEIFVWSVQ---TGQLLDILSGHEGPVSGLSFSPDGSLLASGSW 498 (893)
T ss_pred EEEEcCCCCEEEeeccceEEEEEEEee---cCeeeehhcCCCCcceeeEEccccCeEEeccc
Confidence 788888897655555555688888874 45533333344443467889999997765543
No 119
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=97.42 E-value=0.0091 Score=58.56 Aligned_cols=154 Identities=14% Similarity=0.132 Sum_probs=90.0
Q ss_pred EEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeee--cCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc-e
Q 016199 88 LLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWI--NTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS-T 164 (393)
Q Consensus 88 ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~--~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g-~ 164 (393)
++++...+++|+|... .|..|+.....+..-+.... +..+-...-.+.+|| +.|+|+.....+-.+|... .
T Consensus 425 vtIS~~trhVyTgGkg-cVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdg-----rtLivGGeastlsiWDLAapT 498 (705)
T KOG0639|consen 425 VTISNPTRHVYTGGKG-CVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDG-----RTLIVGGEASTLSIWDLAAPT 498 (705)
T ss_pred EEecCCcceeEecCCC-eEEEeeccCCCCCCccccccccCcccceeeeEecCCC-----ceEEeccccceeeeeeccCCC
Confidence 4566666789987654 47777775432111111111 111223344556788 3688875445577777654 2
Q ss_pred EEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEE-EEecCccCCCcEEEc
Q 016199 165 VLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETK-VLVSDLYFANGVVLS 243 (393)
Q Consensus 165 ~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~-~~~~~l~~~ngi~~s 243 (393)
..+..+.... ...+..+++.+|-++-|+.- ..|.|..||.....+. .+...-..+..|.++
T Consensus 499 prikaeltss-apaCyALa~spDakvcFscc-----------------sdGnI~vwDLhnq~~VrqfqGhtDGascIdis 560 (705)
T KOG0639|consen 499 PRIKAELTSS-APACYALAISPDAKVCFSCC-----------------SDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS 560 (705)
T ss_pred cchhhhcCCc-chhhhhhhcCCccceeeeec-----------------cCCcEEEEEcccceeeecccCCCCCceeEEec
Confidence 2222222211 13467889999999888852 2456888887644332 222223346678899
Q ss_pred CCCCEEEEEeCCCCeEEEEEecC
Q 016199 244 PDQTHLVYCETSMRRCRKFYIKG 266 (393)
Q Consensus 244 ~dg~~l~v~~~~~~ri~~~~~~g 266 (393)
+||-. +|+.-..+.+..||+..
T Consensus 561 ~dGtk-lWTGGlDntvRcWDlre 582 (705)
T KOG0639|consen 561 KDGTK-LWTGGLDNTVRCWDLRE 582 (705)
T ss_pred CCCce-eecCCCccceeehhhhh
Confidence 99954 56676789999999863
No 120
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.41 E-value=0.0079 Score=57.65 Aligned_cols=159 Identities=9% Similarity=0.131 Sum_probs=100.9
Q ss_pred cCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecC-CCceeeeEECCCCCCCCceEEEEEeCCCceE
Q 016199 79 YGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINT-GGRPLGIAFANSDPDADRITMIVADAYKGLL 157 (393)
Q Consensus 79 ~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~-~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~ 157 (393)
+|..+.-.-|.|+||.+.|.+...+.-+..+|.+++. ....+... +..+..-+.-+|| .++.+|...++++
T Consensus 266 vgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd---~~~~y~~~~~~S~~sc~W~pDg-----~~~V~Gs~dr~i~ 337 (519)
T KOG0293|consen 266 VGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGD---LRHLYPSGLGFSVSSCAWCPDG-----FRFVTGSPDRTII 337 (519)
T ss_pred ecccCceEEEEECCCCCeEEecCchHheeeccCCcch---hhhhcccCcCCCcceeEEccCC-----ceeEecCCCCcEE
Confidence 3433444558899999877665556668888887664 12333322 3567778888898 2455665577899
Q ss_pred EEeCCceEEEeeccCCccccccccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccC
Q 016199 158 KISGNSTVLLTDEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYF 236 (393)
Q Consensus 158 ~id~~g~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~ 236 (393)
..|.+|. +....+|.....+.++++.+||. ++..+ ....+..|+..+..-+-+...-..
T Consensus 338 ~wdlDgn--~~~~W~gvr~~~v~dlait~Dgk~vl~v~------------------~d~~i~l~~~e~~~dr~lise~~~ 397 (519)
T KOG0293|consen 338 MWDLDGN--ILGNWEGVRDPKVHDLAITYDGKYVLLVT------------------VDKKIRLYNREARVDRGLISEEQP 397 (519)
T ss_pred EecCCcc--hhhcccccccceeEEEEEcCCCcEEEEEe------------------cccceeeechhhhhhhccccccCc
Confidence 9999881 12233444445578999999994 44442 123566676654332223333344
Q ss_pred CCcEEEcCCCCEEEEEeCCCCeEEEEEecC
Q 016199 237 ANGVVLSPDQTHLVYCETSMRRCRKFYIKG 266 (393)
Q Consensus 237 ~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g 266 (393)
...++++.||+..++ +-....+..+|++.
T Consensus 398 its~~iS~d~k~~Lv-nL~~qei~LWDl~e 426 (519)
T KOG0293|consen 398 ITSFSISKDGKLALV-NLQDQEIHLWDLEE 426 (519)
T ss_pred eeEEEEcCCCcEEEE-EcccCeeEEeecch
Confidence 577899999976655 44578899999874
No 121
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.39 E-value=0.0059 Score=58.81 Aligned_cols=146 Identities=14% Similarity=0.120 Sum_probs=94.3
Q ss_pred CceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCc-eEEEeCCc
Q 016199 85 PEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKG-LLKISGNS 163 (393)
Q Consensus 85 Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g-l~~id~~g 163 (393)
=.+.+++|||..+-+|+.||.|..|+..... .+..|....+....|.|..+| ...+..+..+ |..+|...
T Consensus 350 ~ts~~fHpDgLifgtgt~d~~vkiwdlks~~---~~a~Fpght~~vk~i~FsENG------Y~Lat~add~~V~lwDLRK 420 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT---NVAKFPGHTGPVKAISFSENG------YWLATAADDGSVKLWDLRK 420 (506)
T ss_pred eEEeeEcCCceEEeccCCCceEEEEEcCCcc---ccccCCCCCCceeEEEeccCc------eEEEEEecCCeEEEEEehh
Confidence 3467899999644467789988888887543 145554444556899999999 4444445666 88888654
Q ss_pred ---eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEe---cCccCC
Q 016199 164 ---TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLV---SDLYFA 237 (393)
Q Consensus 164 ---~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~---~~l~~~ 237 (393)
++.+. -....-++.+.+|..|...+.- ...-.||.++.+++.++... ......
T Consensus 421 l~n~kt~~----l~~~~~v~s~~fD~SGt~L~~~-----------------g~~l~Vy~~~k~~k~W~~~~~~~~~sg~s 479 (506)
T KOG0289|consen 421 LKNFKTIQ----LDEKKEVNSLSFDQSGTYLGIA-----------------GSDLQVYICKKKTKSWTEIKELADHSGLS 479 (506)
T ss_pred hcccceee----ccccccceeEEEcCCCCeEEee-----------------cceeEEEEEecccccceeeehhhhccccc
Confidence 22221 1111236789999999654442 23457889988877766542 334467
Q ss_pred CcEEEcCCCCEEEEEeCCCCeEEEE
Q 016199 238 NGVVLSPDQTHLVYCETSMRRCRKF 262 (393)
Q Consensus 238 ngi~~s~dg~~l~v~~~~~~ri~~~ 262 (393)
+|+.|..+- .|+..++..+++++
T Consensus 480 t~v~Fg~~a--q~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 480 TGVRFGEHA--QYLASTSMDAILRL 502 (506)
T ss_pred ceeeecccc--eEEeeccchhheEE
Confidence 899887664 45556666777664
No 122
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.36 E-value=0.08 Score=50.19 Aligned_cols=178 Identities=13% Similarity=0.093 Sum_probs=81.7
Q ss_pred CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCC-----ceeeeEECCCCCCCCceEEEEEeCCCceE
Q 016199 83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGG-----RPLGIAFANSDPDADRITMIVADAYKGLL 157 (393)
Q Consensus 83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~-----~p~gl~~d~~G~~~~~~~L~v~~~~~gl~ 157 (393)
....+|+|..+.+ -|+....+.|++=. +++. .++....... +-..+.++. . +.||+. ..|++
T Consensus 17 ~~l~dV~F~d~~~-G~~VG~~g~il~T~-DGG~---tW~~~~~~~~~~~~~~l~~I~f~~-~------~g~ivG-~~g~l 83 (302)
T PF14870_consen 17 KPLLDVAFVDPNH-GWAVGAYGTILKTT-DGGK---TWQPVSLDLDNPFDYHLNSISFDG-N------EGWIVG-EPGLL 83 (302)
T ss_dssp S-EEEEEESSSS--EEEEETTTEEEEES-STTS---S-EE-----S-----EEEEEEEET-T------EEEEEE-ETTEE
T ss_pred CceEEEEEecCCE-EEEEecCCEEEEEC-CCCc---cccccccCCCccceeeEEEEEecC-C------ceEEEc-CCceE
Confidence 3455677875554 55555566666543 3332 1444321111 234666654 4 566663 45655
Q ss_pred EEeCCc-e--EEE--eeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec
Q 016199 158 KISGNS-T--VLL--TDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS 232 (393)
Q Consensus 158 ~id~~g-~--~~l--~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~ 232 (393)
....++ . +.+ ....++.+ ..+....++.++++. ..|.||+-.-.+...+.+..
T Consensus 84 l~T~DgG~tW~~v~l~~~lpgs~----~~i~~l~~~~~~l~~------------------~~G~iy~T~DgG~tW~~~~~ 141 (302)
T PF14870_consen 84 LHTTDGGKTWERVPLSSKLPGSP----FGITALGDGSAELAG------------------DRGAIYRTTDGGKTWQAVVS 141 (302)
T ss_dssp EEESSTTSS-EE----TT-SS-E----EEEEEEETTEEEEEE------------------TT--EEEESSTTSSEEEEE-
T ss_pred EEecCCCCCcEEeecCCCCCCCe----eEEEEcCCCcEEEEc------------------CCCcEEEeCCCCCCeeEccc
Confidence 555554 2 222 12233332 244444455555542 24678877655556665543
Q ss_pred C-ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199 233 D-LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA 299 (393)
Q Consensus 233 ~-l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~ 299 (393)
+ ....+.+..++||+.+.|+ .++.+++-+-.|. ..-+.+...-...-.+|.++++|.+|+...
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs--~~G~~~~s~~~G~--~~w~~~~r~~~~riq~~gf~~~~~lw~~~~ 205 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVS--SRGNFYSSWDPGQ--TTWQPHNRNSSRRIQSMGFSPDGNLWMLAR 205 (302)
T ss_dssp S----EEEEEE-TTS-EEEEE--TTSSEEEEE-TT---SS-EEEE--SSS-EEEEEE-TTS-EEEEET
T ss_pred CCcceeEeEEECCCCcEEEEE--CcccEEEEecCCC--ccceEEccCccceehhceecCCCCEEEEeC
Confidence 3 3334566778999766555 4566776543332 112223222223345688899999999875
No 123
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.36 E-value=0.043 Score=50.63 Aligned_cols=107 Identities=22% Similarity=0.280 Sum_probs=59.6
Q ss_pred CCceeeeEECCCCCCCCceEEEEEeCCCc--eEEEeCCc--eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccch
Q 016199 127 GGRPLGIAFANSDPDADRITMIVADAYKG--LLKISGNS--TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYL 201 (393)
Q Consensus 127 ~~~p~gl~~d~~G~~~~~~~L~v~~~~~g--l~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~ 201 (393)
..+-++|++++.-+ ..+.++ -.-| .+.+|+++ ..+.....++..+ +-++ ++++|| .||.|.-..+
T Consensus 67 paR~Hgi~~~p~~~----ravafA-RrPGtf~~vfD~~~~~~pv~~~s~~~RHf-yGHG-vfs~dG~~LYATEndfd--- 136 (366)
T COG3490 67 PARGHGIAFHPALP----RAVAFA-RRPGTFAMVFDPNGAQEPVTLVSQEGRHF-YGHG-VFSPDGRLLYATENDFD--- 136 (366)
T ss_pred ccccCCeecCCCCc----ceEEEE-ecCCceEEEECCCCCcCcEEEecccCcee-eccc-ccCCCCcEEEeecCCCC---
Confidence 45677888887531 134444 2333 45668877 2222223344433 2345 588999 5677642111
Q ss_pred hhheehhcccCCCcEEEEEeCCCCeEEE---EecCccCCCcEEEcCCCCEEEEEeC
Q 016199 202 REYILDIFEGKPNGRLLSFDPVTKETKV---LVSDLYFANGVVLSPDQTHLVYCET 254 (393)
Q Consensus 202 ~~~~~~~~e~~~~g~l~~~d~~t~~~~~---~~~~l~~~ngi~~s~dg~~l~v~~~ 254 (393)
...|-|=.||... .+.. +...-..|+.+.+.+||+.+.+++-
T Consensus 137 ----------~~rGViGvYd~r~-~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG 181 (366)
T COG3490 137 ----------PNRGVIGVYDARE-GFQRVGEFSTHGIGPHEVTLMADGRTLVVANG 181 (366)
T ss_pred ----------CCCceEEEEeccc-ccceecccccCCcCcceeEEecCCcEEEEeCC
Confidence 2334455676543 2222 2233456899999999998888753
No 124
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.36 E-value=0.21 Score=50.95 Aligned_cols=257 Identities=11% Similarity=0.037 Sum_probs=124.3
Q ss_pred CEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCc-------eeeeEECCCCCCCCceEEEEEeC---------CCceEE
Q 016199 95 KLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGR-------PLGIAFANSDPDADRITMIVADA---------YKGLLK 158 (393)
Q Consensus 95 ~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~-------p~gl~~d~~G~~~~~~~L~v~~~---------~~gl~~ 158 (393)
+.+|+++.++.|+.++.++++ .......... -....+. ++ .+|++.. .+.++.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~----~~W~~~~~~~~~~~~~i~ssP~v~-~~------~v~vg~~~~~~~~~~~~g~v~a 179 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGK----QVWKFGNNDQVPPGYTMTGAPTIV-KK------LVIIGSSGAEFFACGVRGALRA 179 (488)
T ss_pred CeEEEecCCCeEEEEECCCCC----EeeeecCCCCcCcceEecCCCEEE-CC------EEEEeccccccccCCCCcEEEE
Confidence 469999999999999998765 2222111111 0122232 36 7888743 234788
Q ss_pred EeCC-ceEEEeeccC-Ccc--cc---------------ccccEEEcC-CCcEEEEeCCCc-cchhhheehhcccCCCcEE
Q 016199 159 ISGN-STVLLTDEAE-GQK--FK---------------LTDGVDVAD-DGMIYFTDASNK-YYLREYILDIFEGKPNGRL 217 (393)
Q Consensus 159 id~~-g~~~l~~~~~-g~~--~~---------------~~~~l~~d~-dG~l~~td~~~~-~~~~~~~~~~~e~~~~g~l 217 (393)
+|.+ |......... ..+ .. .-...++|+ .|.+|++..... ........ .......+.|
T Consensus 180 lD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~-~~~~~~~~~l 258 (488)
T cd00216 180 YDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRT-PGDNLYTDSI 258 (488)
T ss_pred EECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccC-CCCCCceeeE
Confidence 8875 4333322111 100 00 001346665 568888853210 00000000 0001124579
Q ss_pred EEEeCCCCeEEEEec-C---c---cCCCcEEEc----CCCC--EEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCC
Q 016199 218 LSFDPVTKETKVLVS-D---L---YFANGVVLS----PDQT--HLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPD 284 (393)
Q Consensus 218 ~~~d~~t~~~~~~~~-~---l---~~~ngi~~s----~dg~--~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~ 284 (393)
+.+|.++|+..=... . + ..+....+. -||+ .+++..+..++++.++.+. |+ ..+..... -.
T Consensus 259 ~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~t---G~-~~W~~~~~--~~ 332 (488)
T cd00216 259 VALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTT---GK-LISARPEV--EQ 332 (488)
T ss_pred EEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCC---Cc-EeeEeEee--cc
Confidence 999999887542211 1 0 111111111 2343 2445556678999999742 22 12211111 12
Q ss_pred eEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCC--------
Q 016199 285 NIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPE-------- 355 (393)
Q Consensus 285 ~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~-------- 355 (393)
+++.++ +.+|++.......+ .... .........+.|..+|. +|+++-....+.
T Consensus 333 ~~~~~~-~~vyv~~~~~~~~~----~~~~-------------~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g 394 (488)
T cd00216 333 PMAYDP-GLVYLGAFHIPLGL----PPQK-------------KKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIG 394 (488)
T ss_pred ccccCC-ceEEEccccccccC----cccc-------------cCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccC
Confidence 244454 67887653211000 0000 00011123367999995 688887766541
Q ss_pred -CCccEEEEEeCCEEEEEecCCCeEEEEeCCCCC
Q 016199 356 -MSLISSAIKIGDHLYCGSVHHRGILHLDVNQHP 388 (393)
Q Consensus 356 -~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~~~ 388 (393)
....+.....++.||+++ ....|..||.+...
T Consensus 395 ~~~~~~~~~~~g~~v~~g~-~dG~l~ald~~tG~ 427 (488)
T cd00216 395 FPHWGGSLATAGNLVFAGA-ADGYFRAFDATTGK 427 (488)
T ss_pred CcccCcceEecCCeEEEEC-CCCeEEEEECCCCc
Confidence 111123345678999997 55688888876544
No 125
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=97.35 E-value=0.12 Score=47.63 Aligned_cols=185 Identities=11% Similarity=0.116 Sum_probs=106.4
Q ss_pred eEEEecCCCEEEEEecCCe--EEEEEcCCCCCccee-eeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCC-
Q 016199 87 DLLYDAHSKLIYTGCEDGW--IKRVTLNDSPADSLV-HNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGN- 162 (393)
Q Consensus 87 ~ia~d~~g~~L~~~~~~g~--I~~~~~~~~~~~~~~-~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~- 162 (393)
..|+.|.|+.+-.|.-|.. ||.+...+..+...+ ..+....+-.....|-.|+ .|+.+..+.-...+|.+
T Consensus 102 tCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~------~ilT~SGD~TCalWDie~ 175 (343)
T KOG0286|consen 102 TCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN------HILTGSGDMTCALWDIET 175 (343)
T ss_pred EEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC------ceEecCCCceEEEEEccc
Confidence 4789999986555555554 554442211111111 1222223345566666687 77777555556666754
Q ss_pred ceEEEeeccCCccccccccEEEcC-CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeE-EEEecCccCCCcE
Q 016199 163 STVLLTDEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKET-KVLVSDLYFANGV 240 (393)
Q Consensus 163 g~~~l~~~~~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~-~~~~~~l~~~ngi 240 (393)
|.... .+.|.. .-+-++.+.| +++.|++- .....-+.+|...+.. +.+...-.-.|.|
T Consensus 176 g~~~~--~f~GH~-gDV~slsl~p~~~ntFvSg-----------------~cD~~aklWD~R~~~c~qtF~ghesDINsv 235 (343)
T KOG0286|consen 176 GQQTQ--VFHGHT-GDVMSLSLSPSDGNTFVSG-----------------GCDKSAKLWDVRSGQCVQTFEGHESDINSV 235 (343)
T ss_pred ceEEE--EecCCc-ccEEEEecCCCCCCeEEec-----------------ccccceeeeeccCcceeEeecccccccceE
Confidence 32111 122222 1234677888 88999884 2334455666654433 3344444567999
Q ss_pred EEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeecc-CCCCCCeEEECCCCCEEEEEec
Q 016199 241 VLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIET-LPGLPDNIRYDGEGHYLIALAT 300 (393)
Q Consensus 241 ~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~-l~g~P~~i~~d~~G~lwva~~~ 300 (393)
.|.|+| .-+.+.+..+.+..||+..+ .+...|... ...--..++++..|++.++...
T Consensus 236 ~ffP~G-~afatGSDD~tcRlyDlRaD--~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~ 293 (343)
T KOG0286|consen 236 RFFPSG-DAFATGSDDATCRLYDLRAD--QELAVYSHDSIICGITSVAFSKSGRLLFAGYD 293 (343)
T ss_pred EEccCC-CeeeecCCCceeEEEeecCC--cEEeeeccCcccCCceeEEEcccccEEEeeec
Confidence 999999 56788888899999999543 234444311 1111356889999998887653
No 126
>PTZ00421 coronin; Provisional
Probab=97.32 E-value=0.058 Score=54.94 Aligned_cols=162 Identities=8% Similarity=0.031 Sum_probs=92.7
Q ss_pred CCCceEEEecCC-CEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCC-ceEEEe
Q 016199 83 KGPEDLLYDAHS-KLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYK-GLLKIS 160 (393)
Q Consensus 83 ~~Pe~ia~d~~g-~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~-gl~~id 160 (393)
....+++|.|++ +.|.+++.|+.|..|+.+.+. ....+........++++.++| .++++.... .|..+|
T Consensus 126 ~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~---~~~~l~~h~~~V~sla~spdG------~lLatgs~Dg~IrIwD 196 (493)
T PTZ00421 126 KKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK---AVEVIKCHSDQITSLEWNLDG------SLLCTTSKDKKLNIID 196 (493)
T ss_pred CcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe---EEEEEcCCCCceEEEEEECCC------CEEEEecCCCEEEEEE
Confidence 345668999875 577788889999999988654 123333234457899999999 766554544 466778
Q ss_pred CCceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCe--EEEEe-cCccCC
Q 016199 161 GNSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKE--TKVLV-SDLYFA 237 (393)
Q Consensus 161 ~~g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~--~~~~~-~~l~~~ 237 (393)
....+.+. ...+........+.+.+++..+++.... ....+.|..||..+.. ..... +.....
T Consensus 197 ~rsg~~v~-tl~~H~~~~~~~~~w~~~~~~ivt~G~s-------------~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~ 262 (493)
T PTZ00421 197 PRDGTIVS-SVEAHASAKSQRCLWAKRKDLIITLGCS-------------KSQQRQIMLWDTRKMASPYSTVDLDQSSAL 262 (493)
T ss_pred CCCCcEEE-EEecCCCCcceEEEEcCCCCeEEEEecC-------------CCCCCeEEEEeCCCCCCceeEeccCCCCce
Confidence 65411111 1111110111234555666555553211 0224568888875432 11111 111112
Q ss_pred CcEEEcCCCCEEEEEeCCCCeEEEEEecCC
Q 016199 238 NGVVLSPDQTHLVYCETSMRRCRKFYIKGK 267 (393)
Q Consensus 238 ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~ 267 (393)
....+++|++.+|++..+.+.|..|++...
T Consensus 263 ~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 263 FIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred EEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 224578999888888777888999998643
No 127
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=97.31 E-value=0.14 Score=48.68 Aligned_cols=241 Identities=14% Similarity=0.138 Sum_probs=122.5
Q ss_pred cCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeC
Q 016199 82 LKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISG 161 (393)
Q Consensus 82 ~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~ 161 (393)
...-|.+.+.|.++.|.+|+.+|.++.|....+. ..+.+.....+...=.|-++| +++..+...+-|..+++
T Consensus 148 ~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~---~~kv~~Gh~~~ct~G~f~pdG-----Kr~~tgy~dgti~~Wn~ 219 (399)
T KOG0296|consen 148 VEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA---LCKVMSGHNSPCTCGEFIPDG-----KRILTGYDDGTIIVWNP 219 (399)
T ss_pred cCceEEEEecccccEEEeecCCCcEEEEECCCcc---eeeEecCCCCCcccccccCCC-----ceEEEEecCceEEEEec
Confidence 3456778999999999999999999999887633 133333222222333566788 36666655455777788
Q ss_pred Cc-eEEEe-eccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCc
Q 016199 162 NS-TVLLT-DEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANG 239 (393)
Q Consensus 162 ~g-~~~l~-~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ng 239 (393)
+. ..... ...++.+ ...+.+...|.+.+.-.+.. -.+.+. ..+|.+.-.+..+. .......-...+.
T Consensus 220 ktg~p~~~~~~~e~~~---~~~~~~~~~~~~~~~g~~e~-----~~~~~~--~~sgKVv~~~n~~~-~~l~~~~e~~~es 288 (399)
T KOG0296|consen 220 KTGQPLHKITQAEGLE---LPCISLNLAGSTLTKGNSEG-----VACGVN--NGSGKVVNCNNGTV-PELKPSQEELDES 288 (399)
T ss_pred CCCceeEEecccccCc---CCccccccccceeEeccCCc-----cEEEEc--cccceEEEecCCCC-ccccccchhhhhh
Confidence 65 22221 1222222 12333333343333210000 000000 12233333222111 0000000011122
Q ss_pred EE---EcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEE---ECCCCCEEEEEecCcchhhhhhhcCc
Q 016199 240 VV---LSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIR---YDGEGHYLIALATEFSTYWDLAYRYP 313 (393)
Q Consensus 240 i~---~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~---~d~~G~lwva~~~~r~~~~~~~~~~~ 313 (393)
|. ++.+= -|..+....++|..||+... ..+.... .++++. ..+.-.++-++..
T Consensus 289 ve~~~~ss~l-pL~A~G~vdG~i~iyD~a~~---~~R~~c~----he~~V~~l~w~~t~~l~t~c~~------------- 347 (399)
T KOG0296|consen 289 VESIPSSSKL-PLAACGSVDGTIAIYDLAAS---TLRHICE----HEDGVTKLKWLNTDYLLTACAN------------- 347 (399)
T ss_pred hhhccccccc-chhhcccccceEEEEecccc---hhheecc----CCCceEEEEEcCcchheeeccC-------------
Confidence 22 22222 25566667899999998532 2222221 233433 3443444544442
Q ss_pred chhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCCCCccEEEEEeCCEEEEEecCCCeEEEEeC
Q 016199 314 FIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDV 384 (393)
Q Consensus 314 ~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~~~~~ 384 (393)
+.|.++|. .|+....|+-.......++...+.++.++.-..+-..+|+.
T Consensus 348 ----------------------g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 348 ----------------------GKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred ----------------------ceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 45788885 68888888876666667777778777777655555555554
No 128
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=97.31 E-value=0.12 Score=47.09 Aligned_cols=192 Identities=14% Similarity=0.232 Sum_probs=109.1
Q ss_pred CccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeee--cCCCceeeeEECCCCCCCCceEEEEEeCCCceE
Q 016199 80 GVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWI--NTGGRPLGIAFANSDPDADRITMIVADAYKGLL 157 (393)
Q Consensus 80 g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~--~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~ 157 (393)
+.++.-.++++..+|..|-.|+.++.+..++.+... ...... ...+....++.++..+| .+..+.++..|.
T Consensus 18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r---~~~~~~~~gh~~svdql~w~~~~~d----~~atas~dk~ir 90 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDR---FRKELVYRGHTDSVDQLCWDPKHPD----LFATASGDKTIR 90 (313)
T ss_pred hhhhcceEEEEcccCceeeecccCCceEEEEecchh---hhhhhcccCCCcchhhheeCCCCCc----ceEEecCCceEE
Confidence 344555679999999988888889888888776542 011111 11234567888876542 444444455577
Q ss_pred EEeC-CceEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCcc
Q 016199 158 KISG-NSTVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLY 235 (393)
Q Consensus 158 ~id~-~g~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~ 235 (393)
++|. .+......+..+..+ -+...|+| .+.+++ ....|-.+|..+.+...-.....
T Consensus 91 ~wd~r~~k~~~~i~~~~eni----~i~wsp~g~~~~~~~------------------kdD~it~id~r~~~~~~~~~~~~ 148 (313)
T KOG1407|consen 91 IWDIRSGKCTARIETKGENI----NITWSPDGEYIAVGN------------------KDDRITFIDARTYKIVNEEQFKF 148 (313)
T ss_pred EEEeccCcEEEEeeccCcce----EEEEcCCCCEEEEec------------------CcccEEEEEecccceeehhcccc
Confidence 7774 332122112222222 45778887 454552 34567777765444333233345
Q ss_pred CCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCe---EEECCCCCEEE-EEecCcchhhh
Q 016199 236 FANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDN---IRYDGEGHYLI-ALATEFSTYWD 307 (393)
Q Consensus 236 ~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~---i~~d~~G~lwv-a~~~~r~~~~~ 307 (393)
+.|-+++.-++ .++|.+++.|.|.....- . .+... .+...|.| |.+|++|+++. +....-..+||
T Consensus 149 e~ne~~w~~~n-d~Fflt~GlG~v~ILsyp--s---Lkpv~-si~AH~snCicI~f~p~GryfA~GsADAlvSLWD 217 (313)
T KOG1407|consen 149 EVNEISWNNSN-DLFFLTNGLGCVEILSYP--S---LKPVQ-SIKAHPSNCICIEFDPDGRYFATGSADALVSLWD 217 (313)
T ss_pred eeeeeeecCCC-CEEEEecCCceEEEEecc--c---ccccc-ccccCCcceEEEEECCCCceEeeccccceeeccC
Confidence 67888888666 577888888887776542 1 11111 23345544 55799999764 33333334554
No 129
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=97.29 E-value=0.0049 Score=57.21 Aligned_cols=180 Identities=18% Similarity=0.301 Sum_probs=102.3
Q ss_pred ceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeee-cCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEe-C-C
Q 016199 86 EDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWI-NTGGRPLGIAFANSDPDADRITMIVADAYKGLLKIS-G-N 162 (393)
Q Consensus 86 e~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~-~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id-~-~ 162 (393)
.+|.|+.|...|-.|+.||+|..|...+++ ....|. ....+...+.|.+|+ .-.+........++. . .
T Consensus 267 lci~FSRDsEMlAsGsqDGkIKvWri~tG~---ClRrFdrAHtkGvt~l~FSrD~------SqiLS~sfD~tvRiHGlKS 337 (508)
T KOG0275|consen 267 LCISFSRDSEMLASGSQDGKIKVWRIETGQ---CLRRFDRAHTKGVTCLSFSRDN------SQILSASFDQTVRIHGLKS 337 (508)
T ss_pred EEEeecccHHHhhccCcCCcEEEEEEecch---HHHHhhhhhccCeeEEEEccCc------chhhcccccceEEEecccc
Confidence 346677777666677889988888877664 233332 123456788898888 444443445555554 2 2
Q ss_pred ceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEE----EEecCccCCC
Q 016199 163 STVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETK----VLVSDLYFAN 238 (393)
Q Consensus 163 g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~----~~~~~l~~~n 238 (393)
| +.+ .+..|.. .++|...+.+||.-.++. +..|.+-.++.++.+.. .+..+.. .|
T Consensus 338 G-K~L-KEfrGHs-Syvn~a~ft~dG~~iisa-----------------SsDgtvkvW~~KtteC~~Tfk~~~~d~~-vn 396 (508)
T KOG0275|consen 338 G-KCL-KEFRGHS-SYVNEATFTDDGHHIISA-----------------SSDGTVKVWHGKTTECLSTFKPLGTDYP-VN 396 (508)
T ss_pred c-hhH-HHhcCcc-ccccceEEcCCCCeEEEe-----------------cCCccEEEecCcchhhhhhccCCCCccc-ce
Confidence 3 111 2344433 578898999999766664 34567888887765421 1122222 34
Q ss_pred cEEEcC-CCCEEEEEeCCCCeEEEEEecCCCCcceeeeecc--CCCCCCeEEECCCCCEEEEEe
Q 016199 239 GVVLSP-DQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIET--LPGLPDNIRYDGEGHYLIALA 299 (393)
Q Consensus 239 gi~~s~-dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~--l~g~P~~i~~d~~G~lwva~~ 299 (393)
.+-+-| +-+.++||+. .+.++..++.|.- .+.|..+ ..|---+.++++.|.+..+..
T Consensus 397 sv~~~PKnpeh~iVCNr-sntv~imn~qGQv---VrsfsSGkREgGdFi~~~lSpkGewiYcig 456 (508)
T KOG0275|consen 397 SVILLPKNPEHFIVCNR-SNTVYIMNMQGQV---VRSFSSGKREGGDFINAILSPKGEWIYCIG 456 (508)
T ss_pred eEEEcCCCCceEEEEcC-CCeEEEEeccceE---EeeeccCCccCCceEEEEecCCCcEEEEEc
Confidence 444444 4457778776 5789999887642 2223211 111112345678887444443
No 130
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=97.26 E-value=0.17 Score=47.29 Aligned_cols=190 Identities=19% Similarity=0.260 Sum_probs=102.7
Q ss_pred cCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEe-CCCc--eEE
Q 016199 82 LKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVAD-AYKG--LLK 158 (393)
Q Consensus 82 ~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~-~~~g--l~~ 158 (393)
...-.+++|+++|+.|.+++.|..|..||.-.+. ..+.+.- .....+..+.+.. | +..|+. .... +..
T Consensus 65 ~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs---~l~rirf-~spv~~~q~hp~k----~-n~~va~~~~~sp~vi~ 135 (405)
T KOG1273|consen 65 VRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS---PLKRIRF-DSPVWGAQWHPRK----R-NKCVATIMEESPVVID 135 (405)
T ss_pred ccceeEEEecCCCCEeeeecCCceeEEEeccCCC---ceeEEEc-cCccceeeecccc----C-CeEEEEEecCCcEEEE
Confidence 3444569999999999999999999999987654 1233221 1222333344322 1 344432 2222 222
Q ss_pred EeCCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE--ecCcc
Q 016199 159 ISGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL--VSDLY 235 (393)
Q Consensus 159 id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~--~~~l~ 235 (393)
++. + ...|....++.....+....+|+.|...++- ++.|.++.||..|-+...- .....
T Consensus 136 ~s~-~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitG-----------------tsKGkllv~~a~t~e~vas~rits~~ 197 (405)
T KOG1273|consen 136 FSD-PKHSVLPKDDDGDLNSSASHGVFDRRGKYIITG-----------------TSKGKLLVYDAETLECVASFRITSVQ 197 (405)
T ss_pred ecC-CceeeccCCCccccccccccccccCCCCEEEEe-----------------cCcceEEEEecchheeeeeeeechhe
Confidence 322 3 3444433333322223334688888544442 5678899999876543221 11123
Q ss_pred CCCcEEEcCCCCEEEEEeCCCCeEEEEEecC---C-CCcceee---eeccCCCCC-CeEEECCCCCEEEEEe
Q 016199 236 FANGVVLSPDQTHLVYCETSMRRCRKFYIKG---K-NAGRVEK---FIETLPGLP-DNIRYDGEGHYLIALA 299 (393)
Q Consensus 236 ~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g---~-~~~~~~~---~~~~l~g~P-~~i~~d~~G~lwva~~ 299 (393)
....|.++..|+++.+ ++...-|..|+++. . +.+..+. +.+-....+ ..++++.+|.|.+|..
T Consensus 198 ~IK~I~~s~~g~~lii-NtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s 268 (405)
T KOG1273|consen 198 AIKQIIVSRKGRFLII-NTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGS 268 (405)
T ss_pred eeeEEEEeccCcEEEE-ecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEecc
Confidence 3456778888977655 45555666677641 1 2222221 111111112 4688999998887765
No 131
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=97.26 E-value=0.015 Score=59.73 Aligned_cols=187 Identities=14% Similarity=0.183 Sum_probs=110.4
Q ss_pred ceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCcee-eeEECCCCCCCCceEEEEEeC-CCceEE---Ee
Q 016199 86 EDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPL-GIAFANSDPDADRITMIVADA-YKGLLK---IS 160 (393)
Q Consensus 86 e~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~-gl~~d~~G~~~~~~~L~v~~~-~~gl~~---id 160 (393)
.+..|.|+.+.|..++.|+.+..|..++... +-.+.. ...|. .+.|.|-| +|++++ +.+..+ .|
T Consensus 455 yg~sFsPd~rfLlScSED~svRLWsl~t~s~---~V~y~G-H~~PVwdV~F~P~G-------yYFatas~D~tArLWs~d 523 (707)
T KOG0263|consen 455 YGCSFSPDRRFLLSCSEDSSVRLWSLDTWSC---LVIYKG-HLAPVWDVQFAPRG-------YYFATASHDQTARLWSTD 523 (707)
T ss_pred eeeeecccccceeeccCCcceeeeeccccee---EEEecC-CCcceeeEEecCCc-------eEEEecCCCceeeeeecc
Confidence 3467899988777777788887777776431 122221 12333 46688888 555543 333332 23
Q ss_pred CCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC-ccCCC
Q 016199 161 GNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD-LYFAN 238 (393)
Q Consensus 161 ~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~-l~~~n 238 (393)
..- .++++ | .+.-++.+.+.|+.+..+|- | ....+..+|-.+|...++..+ -....
T Consensus 524 ~~~PlRifa----g-hlsDV~cv~FHPNs~Y~aTG-S----------------sD~tVRlWDv~~G~~VRiF~GH~~~V~ 581 (707)
T KOG0263|consen 524 HNKPLRIFA----G-HLSDVDCVSFHPNSNYVATG-S----------------SDRTVRLWDVSTGNSVRIFTGHKGPVT 581 (707)
T ss_pred cCCchhhhc----c-cccccceEEECCcccccccC-C----------------CCceEEEEEcCCCcEEEEecCCCCceE
Confidence 222 22222 1 12335568899988766653 2 223566666666655444443 34467
Q ss_pred cEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCcc-hhhhhh
Q 016199 239 GVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFS-TYWDLA 309 (393)
Q Consensus 239 gi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~-~~~~~~ 309 (393)
.++++|+|++| .+....+.|..||+.+.+ ....+.+. .+.-..+.++.+|++.++....++ .+||+.
T Consensus 582 al~~Sp~Gr~L-aSg~ed~~I~iWDl~~~~--~v~~l~~H-t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 582 ALAFSPCGRYL-ASGDEDGLIKIWDLANGS--LVKQLKGH-TGTIYSLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred EEEEcCCCceE-eecccCCcEEEEEcCCCc--chhhhhcc-cCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence 89999999766 666668889999985421 12223322 445567889999999987766544 355544
No 132
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=97.24 E-value=0.14 Score=50.09 Aligned_cols=142 Identities=15% Similarity=0.192 Sum_probs=82.2
Q ss_pred EecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeec-CC---CceeeeEECCCCCCCCceEEEEEeCCCceEEEeC-Cce
Q 016199 90 YDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWIN-TG---GRPLGIAFANSDPDADRITMIVADAYKGLLKISG-NST 164 (393)
Q Consensus 90 ~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~-~~---~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~-~g~ 164 (393)
.+.+| .+|+++.+|.|+.++++++. .. |.. .. ....+-.+..+| ++|+++..+-++.+|. +|.
T Consensus 65 ~~~dg-~v~~~~~~G~i~A~d~~~g~----~~-W~~~~~~~~~~~~~~~~~~~G------~i~~g~~~g~~y~ld~~~G~ 132 (370)
T COG1520 65 ADGDG-TVYVGTRDGNIFALNPDTGL----VK-WSYPLLGAVAQLSGPILGSDG------KIYVGSWDGKLYALDASTGT 132 (370)
T ss_pred EeeCC-eEEEecCCCcEEEEeCCCCc----EE-ecccCcCcceeccCceEEeCC------eEEEecccceEEEEECCCCc
Confidence 55566 49999999999999998764 22 211 11 122222333389 9999976555899998 673
Q ss_pred EEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE--ec---CccCCCc
Q 016199 165 VLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL--VS---DLYFANG 239 (393)
Q Consensus 165 ~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~--~~---~l~~~ng 239 (393)
........+. +... +-.+-.++.+|+.+ ..+.++++|..+++..-. .. .......
T Consensus 133 ~~W~~~~~~~-~~~~-~~~v~~~~~v~~~s------------------~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~ 192 (370)
T COG1520 133 LVWSRNVGGS-PYYA-SPPVVGDGTVYVGT------------------DDGHLYALNADTGTLKWTYETPAPLSLSIYGS 192 (370)
T ss_pred EEEEEecCCC-eEEe-cCcEEcCcEEEEec------------------CCCeEEEEEccCCcEEEEEecCCccccccccC
Confidence 3443333331 1111 22344578888872 346799999887765321 11 1111222
Q ss_pred EEEcCCCCEEEEEeCC-CCeEEEEEec
Q 016199 240 VVLSPDQTHLVYCETS-MRRCRKFYIK 265 (393)
Q Consensus 240 i~~s~dg~~l~v~~~~-~~ri~~~~~~ 265 (393)
.. ..++ .+|+.... ++.++.++..
T Consensus 193 ~~-~~~~-~vy~~~~~~~~~~~a~~~~ 217 (370)
T COG1520 193 PA-IASG-TVYVGSDGYDGILYALNAE 217 (370)
T ss_pred ce-eecc-eEEEecCCCcceEEEEEcc
Confidence 22 2344 67776553 4578888873
No 133
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=97.23 E-value=0.074 Score=49.69 Aligned_cols=223 Identities=16% Similarity=0.155 Sum_probs=118.4
Q ss_pred ceeeeEECCCCCCCCceEEEEEeCCCceE-EEeCC-----c-eEEEeeccC---C-ccccccccEEEcCCCcEEEEeCCC
Q 016199 129 RPLGIAFANSDPDADRITMIVADAYKGLL-KISGN-----S-TVLLTDEAE---G-QKFKLTDGVDVADDGMIYFTDASN 197 (393)
Q Consensus 129 ~p~gl~~d~~G~~~~~~~L~v~~~~~gl~-~id~~-----g-~~~l~~~~~---g-~~~~~~~~l~~d~dG~l~~td~~~ 197 (393)
.|=||++.+.| .+||++...+.. .+|.+ + ...+.-.+. + ..-..|.++++.....+-++.-..
T Consensus 24 N~WGia~~p~~------~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~ 97 (336)
T TIGR03118 24 NAWGLSYRPGG------PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGI 97 (336)
T ss_pred ccceeEecCCC------CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCc
Confidence 47799999999 999999877743 34544 3 112211111 1 111235566655332222221100
Q ss_pred ccchhhheehhcccCCCcEEEEEeCCCCeE---E--EEecC---ccCCCcEEEcCC--CCEEEEEeCCCCeEEEEEecCC
Q 016199 198 KYYLREYILDIFEGKPNGRLLSFDPVTKET---K--VLVSD---LYFANGVVLSPD--QTHLVYCETSMRRCRKFYIKGK 267 (393)
Q Consensus 198 ~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~---~--~~~~~---l~~~ngi~~s~d--g~~l~v~~~~~~ri~~~~~~g~ 267 (393)
.....|++. +..|.|-.|.+.-+.. . .+.+. ...=.|+++... +.+||.++..+++|-.||-.-.
T Consensus 98 -~~~a~Fif~----tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~ 172 (336)
T TIGR03118 98 -TGPSRFLFV----TEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFR 172 (336)
T ss_pred -ccceeEEEE----eCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccc
Confidence 001111111 3456777777643322 1 11221 111246776643 5799999999999999984311
Q ss_pred CCcceeeeeccCCCC-----CCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEEC
Q 016199 268 NAGRVEKFIETLPGL-----PDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVD 342 (393)
Q Consensus 268 ~~~~~~~~~~~l~g~-----P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d 342 (393)
+....-.|.| |.+ |-||.- -.|++||.-........| -..-...+.|-+||
T Consensus 173 ~~~~~g~F~D--P~iPagyAPFnIqn-ig~~lyVtYA~qd~~~~d---------------------~v~G~G~G~VdvFd 228 (336)
T TIGR03118 173 PPPLPGSFID--PALPAGYAPFNVQN-LGGTLYVTYAQQDADRND---------------------EVAGAGLGYVNVFT 228 (336)
T ss_pred cccCCCCccC--CCCCCCCCCcceEE-ECCeEEEEEEecCCcccc---------------------cccCCCcceEEEEc
Confidence 1111112332 333 445542 257899875421100000 00112235699999
Q ss_pred CCCcEEEEeeCCC----CCccEEE----EEeCCEEEEEecCCCeEEEEeCCC
Q 016199 343 LDGKPIAHYYDPE----MSLISSA----IKIGDHLYCGSVHHRGILHLDVNQ 386 (393)
Q Consensus 343 ~~g~~~~~~~d~~----~~~~~~~----~~~~g~Lyigs~~~~~i~~~~~~~ 386 (393)
.+|+.++.+.... .+.++.+ -.-.|.|.+|.+.+..|..||...
T Consensus 229 ~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~s 280 (336)
T TIGR03118 229 LNGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQS 280 (336)
T ss_pred CCCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCC
Confidence 9999999987654 2222221 224589999999999999999653
No 134
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=97.21 E-value=0.036 Score=56.72 Aligned_cols=126 Identities=16% Similarity=0.309 Sum_probs=71.4
Q ss_pred CccccccccEEEcC-CCcEEEEeCCCccchhhhe--ehhcccCCCcEEEEEeCCCC-------eEEEEec----------
Q 016199 173 GQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYI--LDIFEGKPNGRLLSFDPVTK-------ETKVLVS---------- 232 (393)
Q Consensus 173 g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~--~~~~e~~~~g~l~~~d~~t~-------~~~~~~~---------- 232 (393)
..++..+.++.+++ +|.+||+.+.....-..-. .........|.|++|++..+ +++.+..
T Consensus 346 AT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~ 425 (524)
T PF05787_consen 346 ATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGN 425 (524)
T ss_pred cccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccc
Confidence 34577789999998 4799998654331000000 00012345689999998765 3333221
Q ss_pred --------CccCCCcEEEcCCCCEEEEEeCCCCeE------------EEE--------EecCCCCcceeeeeccCC-CCC
Q 016199 233 --------DLYFANGVVLSPDQTHLVYCETSMRRC------------RKF--------YIKGKNAGRVEKFIETLP-GLP 283 (393)
Q Consensus 233 --------~l~~~ngi~~s~dg~~l~v~~~~~~ri------------~~~--------~~~g~~~~~~~~~~~~l~-g~P 283 (393)
.+..|..|+++++|+ ||++|-..+.- +.+ +..+...++...|..... .-.
T Consensus 426 ~~~~~~~~~f~sPDNL~~d~~G~-LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~gaE~ 504 (524)
T PF05787_consen 426 GSNKCDDNGFASPDNLAFDPDGN-LWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPNGAEI 504 (524)
T ss_pred ccCcccCCCcCCCCceEECCCCC-EEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeeccCCCCccc
Confidence 256799999999995 77777554421 111 111223344444442111 123
Q ss_pred CeEEECCCCC-EEEEEe
Q 016199 284 DNIRYDGEGH-YLIALA 299 (393)
Q Consensus 284 ~~i~~d~~G~-lwva~~ 299 (393)
.|+++++||+ ++|...
T Consensus 505 tG~~fspDg~tlFvniQ 521 (524)
T PF05787_consen 505 TGPCFSPDGRTLFVNIQ 521 (524)
T ss_pred ccceECCCCCEEEEEEe
Confidence 5788999998 666544
No 135
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=97.21 E-value=0.077 Score=47.02 Aligned_cols=134 Identities=16% Similarity=0.130 Sum_probs=78.6
Q ss_pred eEEEEEcCCCCCcceeeeeec-CCCceeeeEECCCCCCCCceEEEEEeC--CCceEEEeCCceEEEeeccCCcccccccc
Q 016199 105 WIKRVTLNDSPADSLVHNWIN-TGGRPLGIAFANSDPDADRITMIVADA--YKGLLKISGNSTVLLTDEAEGQKFKLTDG 181 (393)
Q Consensus 105 ~I~~~~~~~~~~~~~~~~~~~-~~~~p~gl~~d~~G~~~~~~~L~v~~~--~~gl~~id~~g~~~l~~~~~g~~~~~~~~ 181 (393)
.|++++..+.. ...+.. ..+....+++.|+| +++.+... ...+..+|.++..+. .... ...|.
T Consensus 40 ~l~~~~~~~~~----~~~i~l~~~~~I~~~~WsP~g-----~~favi~g~~~~~v~lyd~~~~~i~--~~~~---~~~n~ 105 (194)
T PF08662_consen 40 ELFYLNEKNIP----VESIELKKEGPIHDVAWSPNG-----NEFAVIYGSMPAKVTLYDVKGKKIF--SFGT---QPRNT 105 (194)
T ss_pred EEEEEecCCCc----cceeeccCCCceEEEEECcCC-----CEEEEEEccCCcccEEEcCcccEeE--eecC---CCceE
Confidence 46666655443 333322 12347899999998 24545432 335777777662111 1111 23568
Q ss_pred EEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCC-----C
Q 016199 182 VDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETS-----M 256 (393)
Q Consensus 182 l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~-----~ 256 (393)
|.++|+|++.+.... +...|.|..||..+.+..... .......++++|||+++..+.+. .
T Consensus 106 i~wsP~G~~l~~~g~--------------~n~~G~l~~wd~~~~~~i~~~-~~~~~t~~~WsPdGr~~~ta~t~~r~~~d 170 (194)
T PF08662_consen 106 ISWSPDGRFLVLAGF--------------GNLNGDLEFWDVRKKKKISTF-EHSDATDVEWSPDGRYLATATTSPRLRVD 170 (194)
T ss_pred EEECCCCCEEEEEEc--------------cCCCcEEEEEECCCCEEeecc-ccCcEEEEEEcCCCCEEEEEEeccceecc
Confidence 999999976655211 123467888998754432222 22346789999999988877654 4
Q ss_pred CeEEEEEecCC
Q 016199 257 RRCRKFYIKGK 267 (393)
Q Consensus 257 ~ri~~~~~~g~ 267 (393)
+++..|+..|.
T Consensus 171 ng~~Iw~~~G~ 181 (194)
T PF08662_consen 171 NGFKIWSFQGR 181 (194)
T ss_pred ccEEEEEecCe
Confidence 55666666654
No 136
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.21 E-value=0.11 Score=46.66 Aligned_cols=177 Identities=11% Similarity=0.182 Sum_probs=102.1
Q ss_pred ceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCceE
Q 016199 86 EDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNSTV 165 (393)
Q Consensus 86 e~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g~~ 165 (393)
..+.+.-+|+...+...+..|..|++..+. .++.+...+...+..+...|+. .+--+.....++.+|.+.-+
T Consensus 21 ~avryN~dGnY~ltcGsdrtvrLWNp~rg~---liktYsghG~EVlD~~~s~Dns-----kf~s~GgDk~v~vwDV~TGk 92 (307)
T KOG0316|consen 21 RAVRYNVDGNYCLTCGSDRTVRLWNPLRGA---LIKTYSGHGHEVLDAALSSDNS-----KFASCGGDKAVQVWDVNTGK 92 (307)
T ss_pred EEEEEccCCCEEEEcCCCceEEeecccccc---eeeeecCCCceeeecccccccc-----ccccCCCCceEEEEEcccCe
Confidence 446678889866666667788888887664 3566665555566666655541 34444344557778865411
Q ss_pred EEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEe---cCccCCCcEEE
Q 016199 166 LLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLV---SDLYFANGVVL 242 (393)
Q Consensus 166 ~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~---~~l~~~ngi~~ 242 (393)
++. ...|. ...+|.+.+..+..+.++- +-...+..||=.+...+.+. +.......|.+
T Consensus 93 v~R-r~rgH-~aqVNtV~fNeesSVv~Sg-----------------sfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v 153 (307)
T KOG0316|consen 93 VDR-RFRGH-LAQVNTVRFNEESSVVASG-----------------SFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV 153 (307)
T ss_pred eee-ecccc-cceeeEEEecCcceEEEec-----------------cccceeEEEEcccCCCCccchhhhhcCceeEEEe
Confidence 221 11221 2346788888777777762 22234666665544443322 11122223333
Q ss_pred cCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCC-CeEEECCCCCEEEEE
Q 016199 243 SPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLP-DNIRYDGEGHYLIAL 298 (393)
Q Consensus 243 s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P-~~i~~d~~G~lwva~ 298 (393)
+ + +.+++.+..+++..|++. .|+. ..+.. |.| +.+.+.++|+.-.+.
T Consensus 154 ~--~-heIvaGS~DGtvRtydiR---~G~l--~sDy~-g~pit~vs~s~d~nc~La~ 201 (307)
T KOG0316|consen 154 A--E-HEIVAGSVDGTVRTYDIR---KGTL--SSDYF-GHPITSVSFSKDGNCSLAS 201 (307)
T ss_pred c--c-cEEEeeccCCcEEEEEee---ccee--ehhhc-CCcceeEEecCCCCEEEEe
Confidence 3 3 567888999999999984 2321 22222 344 568899999955543
No 137
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=97.20 E-value=0.22 Score=48.74 Aligned_cols=232 Identities=13% Similarity=0.193 Sum_probs=124.8
Q ss_pred CCCc-eEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCce-eeeEECCCCCCCCceEEEEEeCCCc--eEE
Q 016199 83 KGPE-DLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRP-LGIAFANSDPDADRITMIVADAYKG--LLK 158 (393)
Q Consensus 83 ~~Pe-~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p-~gl~~d~~G~~~~~~~L~v~~~~~g--l~~ 158 (393)
.+|- ++-+...|+.|..+..|+.+..||..+++ ++........| ..+..-.+. .+-.++..+. +++
T Consensus 276 kgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~----~~q~f~~~s~~~lDVdW~~~~------~F~ts~td~~i~V~k 345 (524)
T KOG0273|consen 276 KGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGT----VKQQFEFHSAPALDVDWQSND------EFATSSTDGCIHVCK 345 (524)
T ss_pred CCceEEEEEcCCCCEEEeccCCccEEEEeccCce----EEEeeeeccCCccceEEecCc------eEeecCCCceEEEEE
Confidence 4453 46788888888888889999999987765 44443333444 444443343 4544444433 455
Q ss_pred EeCCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCC-eEEEEecC---
Q 016199 159 ISGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTK-ETKVLVSD--- 233 (393)
Q Consensus 159 id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~-~~~~~~~~--- 233 (393)
++.++ ...+. |. -+-++.|..++.|.|..+.+. .+.|-.++.... ....+...
T Consensus 346 v~~~~P~~t~~----GH-~g~V~alk~n~tg~LLaS~Sd-----------------D~TlkiWs~~~~~~~~~l~~Hske 403 (524)
T KOG0273|consen 346 VGEDRPVKTFI----GH-HGEVNALKWNPTGSLLASCSD-----------------DGTLKIWSMGQSNSVHDLQAHSKE 403 (524)
T ss_pred ecCCCcceeee----cc-cCceEEEEECCCCceEEEecC-----------------CCeeEeeecCCCcchhhhhhhccc
Confidence 66555 32222 21 134678999999988887532 233333332211 11111000
Q ss_pred ----ccCC-CcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCcchhhhh
Q 016199 234 ----LYFA-NGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDL 308 (393)
Q Consensus 234 ----l~~~-ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~ 308 (393)
...| +.+.-.+.......+...++.+..|++... .....|++... ---.+++.++|++...-...
T Consensus 404 i~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g--v~i~~f~kH~~-pVysvafS~~g~ylAsGs~d------- 473 (524)
T KOG0273|consen 404 IYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG--VPIHTLMKHQE-PVYSVAFSPNGRYLASGSLD------- 473 (524)
T ss_pred eeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC--ceeEeeccCCC-ceEEEEecCCCcEEEecCCC-------
Confidence 0111 222222333345555666788888887522 12333443211 12357889999866543322
Q ss_pred hhcCcchhhhhhhhhhhhCCCCCCCCCceEEEEC-CCCcEEEEeeCCCCCccEEE-EEeCCEEEEEecCCCeEEEEeCC
Q 016199 309 AYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVD-LDGKPIAHYYDPEMSLISSA-IKIGDHLYCGSVHHRGILHLDVN 385 (393)
Q Consensus 309 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d-~~g~~~~~~~d~~~~~~~~~-~~~~g~Lyigs~~~~~i~~~~~~ 385 (393)
++|...+ +.|++++.+.+... +..+ -..+|....++.....+..+|+.
T Consensus 474 ---------------------------g~V~iws~~~~~l~~s~~~~~~--Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 474 ---------------------------GCVHIWSTKTGKLVKSYQGTGG--IFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred ---------------------------CeeEeccccchheeEeecCCCe--EEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 4566665 45888888886542 1111 12345666677777777777764
No 138
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=97.19 E-value=0.12 Score=54.33 Aligned_cols=172 Identities=15% Similarity=0.196 Sum_probs=102.7
Q ss_pred CCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeC-CCceEEEeCCc---eEEEe
Q 016199 93 HSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADA-YKGLLKISGNS---TVLLT 168 (393)
Q Consensus 93 ~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~-~~gl~~id~~g---~~~l~ 168 (393)
+++.+.+++.++.|.++....++.+..+..+. .....++++.+| +..++.. +.+|-.++.+. ...+.
T Consensus 65 ~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rft---lp~r~~~v~g~g------~~iaagsdD~~vK~~~~~D~s~~~~lr 135 (933)
T KOG1274|consen 65 YSNHFLTGSEQNTVLRYKFPSGEEDTILARFT---LPIRDLAVSGSG------KMIAAGSDDTAVKLLNLDDSSQEKVLR 135 (933)
T ss_pred cccceEEeeccceEEEeeCCCCCccceeeeee---ccceEEEEecCC------cEEEeecCceeEEEEeccccchheeec
Confidence 44467888889999999887665333333332 235678999999 6655544 44565565432 22221
Q ss_pred eccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCcc----C-----CCc
Q 016199 169 DEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLY----F-----ANG 239 (393)
Q Consensus 169 ~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~----~-----~ng 239 (393)
..++. +-.|.++|+|++.... +.+|.|+.||.+++......+++. + -+-
T Consensus 136 -gh~ap----Vl~l~~~p~~~fLAvs-----------------s~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~ 193 (933)
T KOG1274|consen 136 -GHDAP----VLQLSYDPKGNFLAVS-----------------SCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTR 193 (933)
T ss_pred -ccCCc----eeeeeEcCCCCEEEEE-----------------ecCceEEEEEcccchhhhhcccCCccccccccceeee
Confidence 22222 3478999999887764 567899999998776554443321 1 234
Q ss_pred EEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCC-CCCCeEEECCCCCEEEEE
Q 016199 240 VVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLP-GLPDNIRYDGEGHYLIAL 298 (393)
Q Consensus 240 i~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~-g~P~~i~~d~~G~lwva~ 298 (393)
++++|+|..+.+.. ..+.|..|+.++... +. .+.++.- .--..+..++.|.|..+.
T Consensus 194 ~aW~Pk~g~la~~~-~d~~Vkvy~r~~we~-~f-~Lr~~~~ss~~~~~~wsPnG~YiAAs 250 (933)
T KOG1274|consen 194 LAWHPKGGTLAVPP-VDNTVKVYSRKGWEL-QF-KLRDKLSSSKFSDLQWSPNGKYIAAS 250 (933)
T ss_pred eeecCCCCeEEeec-cCCeEEEEccCCcee-he-eecccccccceEEEEEcCCCcEEeee
Confidence 67999976665554 467888888765310 11 1111111 112346678888755443
No 139
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=97.18 E-value=0.035 Score=56.36 Aligned_cols=155 Identities=16% Similarity=0.091 Sum_probs=89.3
Q ss_pred eEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeecC---CCceeeeEECCCCCCCCceEEEEEe-CCCceEEEeC
Q 016199 87 DLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWINT---GGRPLGIAFANSDPDADRITMIVAD-AYKGLLKISG 161 (393)
Q Consensus 87 ~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~~---~~~p~gl~~d~~G~~~~~~~L~v~~-~~~gl~~id~ 161 (393)
+-+++|+|+.+-+++- +-+|+++.++... .++.+... .-....+.|..++ +.++++. ....+..++.
T Consensus 387 ~~aiSPdg~~Ia~st~~~~~iy~L~~~~~v---k~~~v~~~~~~~~~a~~i~ftid~-----~k~~~~s~~~~~le~~el 458 (691)
T KOG2048|consen 387 CAAISPDGNLIAISTVSRTKIYRLQPDPNV---KVINVDDVPLALLDASAISFTIDK-----NKLFLVSKNIFSLEEFEL 458 (691)
T ss_pred eeccCCCCCEEEEeeccceEEEEeccCcce---eEEEeccchhhhccceeeEEEecC-----ceEEEEecccceeEEEEe
Confidence 4678899997777764 5589999887632 12222111 1123445555444 1444443 3444666665
Q ss_pred Cc--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCcc-CCC
Q 016199 162 NS--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLY-FAN 238 (393)
Q Consensus 162 ~g--~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~-~~n 238 (393)
++ .+.+........-..+..|++.++|+-+.+- +..|.|+.|+.++++.+.+...+. ...
T Consensus 459 ~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~-----------------~t~g~I~v~nl~~~~~~~l~~rln~~vT 521 (691)
T KOG2048|consen 459 ETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAI-----------------STRGQIFVYNLETLESHLLKVRLNIDVT 521 (691)
T ss_pred cCcchhhhhccccccCCCcceeEEEcCCCCEEEEE-----------------eccceEEEEEcccceeecchhccCccee
Confidence 44 2222211111112346678999999644332 345689999999988887764443 334
Q ss_pred cEEEcCCCCEEEEEeCCCCeEEEEEecC
Q 016199 239 GVVLSPDQTHLVYCETSMRRCRKFYIKG 266 (393)
Q Consensus 239 gi~~s~dg~~l~v~~~~~~ri~~~~~~g 266 (393)
..++.|....-++..+.++.++-|++..
T Consensus 522 a~~~~~~~~~~lvvats~nQv~efdi~~ 549 (691)
T KOG2048|consen 522 AAAFSPFVRNRLVVATSNNQVFEFDIEA 549 (691)
T ss_pred eeeccccccCcEEEEecCCeEEEEecch
Confidence 5566655443344455688999999953
No 140
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.18 E-value=0.062 Score=55.25 Aligned_cols=107 Identities=14% Similarity=0.143 Sum_probs=61.1
Q ss_pred EcCCCCEEEEEeCCCCeEEEEEecCC-CC-cceeeeeccCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhh
Q 016199 242 LSPDQTHLVYCETSMRRCRKFYIKGK-NA-GRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVS 319 (393)
Q Consensus 242 ~s~dg~~l~v~~~~~~ri~~~~~~g~-~~-~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~ 319 (393)
+.+||++.++ ..+++..+|...+ +. .....++ ..+..|-|+.+++||++.+.++...+
T Consensus 284 ~vkdGK~~~V---~gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVanklS~---------------- 343 (635)
T PRK02888 284 AVKAGKFKTI---GGSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGKLSP---------------- 343 (635)
T ss_pred hhhCCCEEEE---CCCEEEEEECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCCCCC----------------
Confidence 4456776666 2467888775420 00 1222233 24567999999999997776664321
Q ss_pred hhhhhhhCCCCCCCCCceEEEEC-------------CCCcEEEEeeCCCCCccEEEEEeCCEEEEEecCCCeEEEEeCCC
Q 016199 320 GMVVRYLGMPPMGKSSSGVFIVD-------------LDGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDVNQ 386 (393)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~v~~~d-------------~~g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~ 386 (393)
.|..+| ++..++.......-+..+ ....+|+.|.+-+-..-|.+.++++
T Consensus 344 -----------------tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHT-aFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 344 -----------------TVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHT-AFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred -----------------cEEEEEChhhhhhhhccCCccceEEEeeccCCCcceE-EECCCCCEEEeEeecceeEEEehHH
Confidence 123332 333344444333222222 3345578888888888888888765
No 141
>PTZ00420 coronin; Provisional
Probab=97.16 E-value=0.07 Score=55.04 Aligned_cols=159 Identities=9% Similarity=0.043 Sum_probs=88.5
Q ss_pred CCCceEEEecCCCEEE-EEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC-CceEEEe
Q 016199 83 KGPEDLLYDAHSKLIY-TGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY-KGLLKIS 160 (393)
Q Consensus 83 ~~Pe~ia~d~~g~~L~-~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~-~gl~~id 160 (393)
..-.+++|+|++..++ +++.|+.|..|+...+. ....+. .......++++++| .++++... +.|..+|
T Consensus 126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~---~~~~i~-~~~~V~SlswspdG------~lLat~s~D~~IrIwD 195 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK---RAFQIN-MPKKLSSLKWNIKG------NLLSGTCVGKHMHIID 195 (568)
T ss_pred CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCc---EEEEEe-cCCcEEEEEECCCC------CEEEEEecCCEEEEEE
Confidence 3456789999887554 56779999999987654 122232 23567899999999 77776554 4477778
Q ss_pred CCc---eEEEeeccCCcc-ccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCC-CeEEEEecCcc
Q 016199 161 GNS---TVLLTDEAEGQK-FKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVT-KETKVLVSDLY 235 (393)
Q Consensus 161 ~~g---~~~l~~~~~g~~-~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t-~~~~~~~~~l~ 235 (393)
+.. ...+. ...+.. ........+.+++..+++....+ .....|..||... ++..... .+.
T Consensus 196 ~Rsg~~i~tl~-gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~-------------~~~R~VkLWDlr~~~~pl~~~-~ld 260 (568)
T PTZ00420 196 PRKQEIASSFH-IHDGGKNTKNIWIDGLGGDDNYILSTGFSK-------------NNMREMKLWDLKNTTSALVTM-SID 260 (568)
T ss_pred CCCCcEEEEEe-cccCCceeEEEEeeeEcCCCCEEEEEEcCC-------------CCccEEEEEECCCCCCceEEE-Eec
Confidence 764 22221 111111 11011112346776666642211 1123577788653 2211111 111
Q ss_pred -CCCcE--EEcCCCCEEEEEeCCCCeEEEEEecC
Q 016199 236 -FANGV--VLSPDQTHLVYCETSMRRCRKFYIKG 266 (393)
Q Consensus 236 -~~ngi--~~s~dg~~l~v~~~~~~ri~~~~~~g 266 (393)
.+..+ .++++...+|++..+.+.|..|++..
T Consensus 261 ~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 261 NASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred CCccceEEeeeCCCCCEEEEEECCCeEEEEEccC
Confidence 12221 33455447888998999999999853
No 142
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=97.12 E-value=0.33 Score=51.24 Aligned_cols=150 Identities=11% Similarity=0.116 Sum_probs=87.9
Q ss_pred CceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeC-Cc
Q 016199 85 PEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISG-NS 163 (393)
Q Consensus 85 Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~-~g 163 (393)
=..|++|++|..|++...+|-|..|+......+ .+.+...+....+++... + .+..+...+-+.++.- ++
T Consensus 16 ~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~--P~ti~~~g~~v~~ia~~s-~------~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE--PETIDISGELVSSIACYS-N------HFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred eEEEEEcCCCCEEEEecCCCceEEeecCCcccC--CchhhccCceeEEEeecc-c------ceEEeeccceEEEeeCCCC
Confidence 345899999999999989998888875543111 122211233345666553 3 5666655555666642 22
Q ss_pred -eE-EEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCc-cCCCcE
Q 016199 164 -TV-LLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDL-YFANGV 240 (393)
Q Consensus 164 -~~-~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l-~~~ngi 240 (393)
.. .+. .+. .-+++++++.+|...++- +..-.|-..+......+..+.+. ...-++
T Consensus 87 ~~~~iL~-Rft----lp~r~~~v~g~g~~iaag-----------------sdD~~vK~~~~~D~s~~~~lrgh~apVl~l 144 (933)
T KOG1274|consen 87 EEDTILA-RFT----LPIRDLAVSGSGKMIAAG-----------------SDDTAVKLLNLDDSSQEKVLRGHDAPVLQL 144 (933)
T ss_pred Cccceee-eee----ccceEEEEecCCcEEEee-----------------cCceeEEEEeccccchheeecccCCceeee
Confidence 11 222 110 124688999999765542 11224555555444444344443 334689
Q ss_pred EEcCCCCEEEEEeCCCCeEEEEEecC
Q 016199 241 VLSPDQTHLVYCETSMRRCRKFYIKG 266 (393)
Q Consensus 241 ~~s~dg~~l~v~~~~~~ri~~~~~~g 266 (393)
.++|.+++|-++. .+|.+..|+++.
T Consensus 145 ~~~p~~~fLAvss-~dG~v~iw~~~~ 169 (933)
T KOG1274|consen 145 SYDPKGNFLAVSS-CDGKVQIWDLQD 169 (933)
T ss_pred eEcCCCCEEEEEe-cCceEEEEEccc
Confidence 9999997776655 589999999864
No 143
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=97.11 E-value=0.00098 Score=39.26 Aligned_cols=28 Identities=18% Similarity=0.483 Sum_probs=24.7
Q ss_pred ccCCCcEEEcCCCCEEEEEeCCCCeEEEE
Q 016199 234 LYFANGVVLSPDQTHLVYCETSMRRCRKF 262 (393)
Q Consensus 234 l~~~ngi~~s~dg~~l~v~~~~~~ri~~~ 262 (393)
+..|.|++++++| .+||+|+.++||.+|
T Consensus 1 f~~P~gvav~~~g-~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDSDG-NIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEETTS-EEEEEECCCTEEEEE
T ss_pred CcCCcEEEEeCCC-CEEEEECCCCEEEEC
Confidence 3579999999877 799999999999886
No 144
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=97.11 E-value=0.037 Score=53.27 Aligned_cols=171 Identities=16% Similarity=0.187 Sum_probs=93.9
Q ss_pred ceEEEecCCCEEEEEecCCe------EEEEEcCCCCCc-ceee-----eeecCCC--------ceeeeEECCCCCCCCce
Q 016199 86 EDLLYDAHSKLIYTGCEDGW------IKRVTLNDSPAD-SLVH-----NWINTGG--------RPLGIAFANSDPDADRI 145 (393)
Q Consensus 86 e~ia~d~~g~~L~~~~~~g~------I~~~~~~~~~~~-~~~~-----~~~~~~~--------~p~gl~~d~~G~~~~~~ 145 (393)
.+|+++++++.+|+-+.+|. ++.+......+. ..+. .+....+ .+.+|++.++|
T Consensus 23 Sgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g------ 96 (326)
T PF13449_consen 23 SGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG------ 96 (326)
T ss_pred eeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC------
Confidence 45888865556777666666 777766541110 0011 1111112 45699998888
Q ss_pred EEEEEeCCC-------ceEEEeCCc--eEEE--eecc-------CC-ccccccccEEEcCCCc-EEEEeCCCccchhhhe
Q 016199 146 TMIVADAYK-------GLLKISGNS--TVLL--TDEA-------EG-QKFKLTDGVDVADDGM-IYFTDASNKYYLREYI 205 (393)
Q Consensus 146 ~L~v~~~~~-------gl~~id~~g--~~~l--~~~~-------~g-~~~~~~~~l~~d~dG~-l~~td~~~~~~~~~~~ 205 (393)
.+||++-+. .|++++.+| ...+ .... .+ .......+|++.+||. ||+..-+.-.+-.. .
T Consensus 97 ~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~-~ 175 (326)
T PF13449_consen 97 SFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGP-R 175 (326)
T ss_pred CEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCc-c
Confidence 999997644 599999888 2222 1111 11 1234467899999997 88875432110000 0
Q ss_pred ehhcccCCCcEEEEEeCCCCe--EE---EEec------CccCCCcEEEcCCCCEEEEEeCC-------CCeEEEEEec
Q 016199 206 LDIFEGKPNGRLLSFDPVTKE--TK---VLVS------DLYFANGVVLSPDQTHLVYCETS-------MRRCRKFYIK 265 (393)
Q Consensus 206 ~~~~e~~~~g~l~~~d~~t~~--~~---~~~~------~l~~~ngi~~s~dg~~l~v~~~~-------~~ri~~~~~~ 265 (393)
.. ......-+|++||+.+.. .. ...+ ....+..++..+|++ ++|-|+. ..+|+++++.
T Consensus 176 ~~-~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~-lLvLER~~~~~~~~~~ri~~v~l~ 251 (326)
T PF13449_consen 176 AN-PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR-LLVLERDFSPGTGNYKRIYRVDLS 251 (326)
T ss_pred cc-cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc-EEEEEccCCCCccceEEEEEEEcc
Confidence 00 000112579999987522 22 2222 123345566667775 7888877 2356666654
No 145
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=97.11 E-value=0.014 Score=56.01 Aligned_cols=189 Identities=11% Similarity=0.100 Sum_probs=108.5
Q ss_pred CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEE-eC
Q 016199 83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKI-SG 161 (393)
Q Consensus 83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~i-d~ 161 (393)
..-..++|.|+|+.|-+++.|..=..||..++...... ........+++|.+|| .|.....-..+-++ |.
T Consensus 262 ~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~Q---EGHs~~v~~iaf~~DG------SL~~tGGlD~~~RvWDl 332 (459)
T KOG0272|consen 262 ARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQ---EGHSKGVFSIAFQPDG------SLAATGGLDSLGRVWDL 332 (459)
T ss_pred hhheeeeecCCCceeeecccccchhhcccccchhhHhh---cccccccceeEecCCC------ceeeccCccchhheeec
Confidence 34455899999998888888886566677665411111 1123457899999999 77665333333333 54
Q ss_pred C-ceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcE
Q 016199 162 N-STVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGV 240 (393)
Q Consensus 162 ~-g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi 240 (393)
. |..++. .+| ...-+.+|+++|+|....|.++ ..+-+||.+-.. ..+..+.........|
T Consensus 333 Rtgr~im~--L~g-H~k~I~~V~fsPNGy~lATgs~---------------Dnt~kVWDLR~r-~~ly~ipAH~nlVS~V 393 (459)
T KOG0272|consen 333 RTGRCIMF--LAG-HIKEILSVAFSPNGYHLATGSS---------------DNTCKVWDLRMR-SELYTIPAHSNLVSQV 393 (459)
T ss_pred ccCcEEEE--ecc-cccceeeEeECCCceEEeecCC---------------CCcEEEeeeccc-ccceecccccchhhhe
Confidence 3 332322 223 2344679999999987777422 223344444332 2222333334556789
Q ss_pred EEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCc
Q 016199 241 VLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEF 302 (393)
Q Consensus 241 ~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r 302 (393)
.++|+....+++.+..+.+-.|.-.+. .....++ +..+---.+.+.++|.+.++....|
T Consensus 394 k~~p~~g~fL~TasyD~t~kiWs~~~~--~~~ksLa-GHe~kV~s~Dis~d~~~i~t~s~DR 452 (459)
T KOG0272|consen 394 KYSPQEGYFLVTASYDNTVKIWSTRTW--SPLKSLA-GHEGKVISLDISPDSQAIATSSFDR 452 (459)
T ss_pred EecccCCeEEEEcccCcceeeecCCCc--ccchhhc-CCccceEEEEeccCCceEEEeccCc
Confidence 999976677788888887777764322 1122222 1112223455677887766665444
No 146
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.07 E-value=0.036 Score=53.32 Aligned_cols=143 Identities=13% Similarity=0.137 Sum_probs=85.8
Q ss_pred CceeeeEECCCCCCCCceEEEEEeCC---CceEEEeCCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhh
Q 016199 128 GRPLGIAFANSDPDADRITMIVADAY---KGLLKISGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLRE 203 (393)
Q Consensus 128 ~~p~gl~~d~~G~~~~~~~L~v~~~~---~gl~~id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~ 203 (393)
...=-+.|.++| +.+...+. .+++.+..++ ++.. ....|.. ..+--|..+||.+..++.
T Consensus 225 dEVWfl~FS~nG------kyLAsaSkD~Taiiw~v~~d~~~kl~-~tlvgh~-~~V~yi~wSPDdryLlaC--------- 287 (519)
T KOG0293|consen 225 DEVWFLQFSHNG------KYLASASKDSTAIIWIVVYDVHFKLK-KTLVGHS-QPVSYIMWSPDDRYLLAC--------- 287 (519)
T ss_pred CcEEEEEEcCCC------eeEeeccCCceEEEEEEecCcceeee-eeeeccc-CceEEEEECCCCCeEEec---------
Confidence 334456778888 54443222 3466666666 3322 2222321 123457889999877775
Q ss_pred heehhcccCCCcEEEEEeCCCCeEEEEec-Cc-cCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCC
Q 016199 204 YILDIFEGKPNGRLLSFDPVTKETKVLVS-DL-YFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPG 281 (393)
Q Consensus 204 ~~~~~~e~~~~g~l~~~d~~t~~~~~~~~-~l-~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g 281 (393)
....-+..+|..+|....... ++ ..+...++.|||.. +|+++.+..|+.++++|+..+.-+-. ..|.
T Consensus 288 --------g~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDgn~~~~W~gv--r~~~ 356 (519)
T KOG0293|consen 288 --------GFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLDGNILGNWEGV--RDPK 356 (519)
T ss_pred --------CchHheeeccCCcchhhhhcccCcCCCcceeEEccCCce-eEecCCCCcEEEecCCcchhhccccc--ccce
Confidence 223347888988887665433 22 33567889999954 67788889999999998643332211 1121
Q ss_pred CCCeEEECCCCCEEEEEe
Q 016199 282 LPDNIRYDGEGHYLIALA 299 (393)
Q Consensus 282 ~P~~i~~d~~G~lwva~~ 299 (393)
--.+++..||.+.+...
T Consensus 357 -v~dlait~Dgk~vl~v~ 373 (519)
T KOG0293|consen 357 -VHDLAITYDGKYVLLVT 373 (519)
T ss_pred -eEEEEEcCCCcEEEEEe
Confidence 23578888998655544
No 147
>PLN00181 protein SPA1-RELATED; Provisional
Probab=97.04 E-value=0.68 Score=50.23 Aligned_cols=181 Identities=9% Similarity=0.095 Sum_probs=102.4
Q ss_pred CceEEEec-CCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECC-CCCCCCceEEEEEeCC-CceEEEeC
Q 016199 85 PEDLLYDA-HSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFAN-SDPDADRITMIVADAY-KGLLKISG 161 (393)
Q Consensus 85 Pe~ia~d~-~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~-~G~~~~~~~L~v~~~~-~gl~~id~ 161 (393)
..++++.+ +++.|.+++.+|.|..|+..+++ ....+....+...++++++ +| .++++... +.|..+|.
T Consensus 535 v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~---~~~~~~~H~~~V~~l~~~p~~~------~~L~Sgs~Dg~v~iWd~ 605 (793)
T PLN00181 535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQ---LVTEMKEHEKRVWSIDYSSADP------TLLASGSDDGSVKLWSI 605 (793)
T ss_pred eeeEEeccCCCCEEEEEeCCCeEEEEECCCCe---EEEEecCCCCCEEEEEEcCCCC------CEEEEEcCCCEEEEEEC
Confidence 35677776 35678888889999999987643 1333433345678999985 66 55544444 44666776
Q ss_pred Cc---eEEEeeccCCccccccccEEEc-CCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeE--EEEecCcc
Q 016199 162 NS---TVLLTDEAEGQKFKLTDGVDVA-DDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKET--KVLVSDLY 235 (393)
Q Consensus 162 ~g---~~~l~~~~~g~~~~~~~~l~~d-~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~--~~~~~~l~ 235 (393)
.. ...+. .. ..+..+.+. ++|.++++. ...+.|+.||..+.+. ..+.....
T Consensus 606 ~~~~~~~~~~----~~--~~v~~v~~~~~~g~~latg-----------------s~dg~I~iwD~~~~~~~~~~~~~h~~ 662 (793)
T PLN00181 606 NQGVSIGTIK----TK--ANICCVQFPSESGRSLAFG-----------------SADHKVYYYDLRNPKLPLCTMIGHSK 662 (793)
T ss_pred CCCcEEEEEe----cC--CCeEEEEEeCCCCCEEEEE-----------------eCCCeEEEEECCCCCccceEecCCCC
Confidence 43 22221 11 123455553 457655552 3457899999865432 22222223
Q ss_pred CCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCC----cceeeeeccCCCCCCeEEECCCCCEEEEEec
Q 016199 236 FANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNA----GRVEKFIETLPGLPDNIRYDGEGHYLIALAT 300 (393)
Q Consensus 236 ~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~----~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~ 300 (393)
....+.+. ++.. +++.+..+.|..|++..... .....+. ........++++++|.+.++...
T Consensus 663 ~V~~v~f~-~~~~-lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~-gh~~~i~~v~~s~~~~~lasgs~ 728 (793)
T PLN00181 663 TVSYVRFV-DSST-LVSSSTDNTLKLWDLSMSISGINETPLHSFM-GHTNVKNFVGLSVSDGYIATGSE 728 (793)
T ss_pred CEEEEEEe-CCCE-EEEEECCCEEEEEeCCCCccccCCcceEEEc-CCCCCeeEEEEcCCCCEEEEEeC
Confidence 34567775 5644 45666788899998753211 1112221 22223455778888886665543
No 148
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=97.03 E-value=0.016 Score=56.54 Aligned_cols=156 Identities=13% Similarity=0.180 Sum_probs=94.8
Q ss_pred CCCceEEEecCC-CEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCc-eEEEe
Q 016199 83 KGPEDLLYDAHS-KLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKG-LLKIS 160 (393)
Q Consensus 83 ~~Pe~ia~d~~g-~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g-l~~id 160 (393)
.-|.++-+.|++ +.+++|..+++|..||...+. .+..+...-+..+.|.|-++| +-+|...+.+ +..++
T Consensus 300 ~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k---vvqeYd~hLg~i~~i~F~~~g------~rFissSDdks~riWe 370 (503)
T KOG0282|consen 300 KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK---VVQEYDRHLGAILDITFVDEG------RRFISSSDDKSVRIWE 370 (503)
T ss_pred CCceeeecCCCCCcEEEEecCCCcEEEEeccchH---HHHHHHhhhhheeeeEEccCC------ceEeeeccCccEEEEE
Confidence 458888899988 667788899999999988654 244554445667889998899 7777766555 33333
Q ss_pred CCceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCC----eEEEEec--Cc
Q 016199 161 GNSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTK----ETKVLVS--DL 234 (393)
Q Consensus 161 ~~g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~----~~~~~~~--~l 234 (393)
-.- .+............+-.+...|.|..+.+. +-...++.|..... +.+.+.. --
T Consensus 371 ~~~-~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQ-----------------s~dN~i~ifs~~~~~r~nkkK~feGh~va 432 (503)
T KOG0282|consen 371 NRI-PVPIKNIADPEMHTMPCLTLHPNGKWFAAQ-----------------SMDNYIAIFSTVPPFRLNKKKRFEGHSVA 432 (503)
T ss_pred cCC-CccchhhcchhhccCcceecCCCCCeehhh-----------------ccCceEEEEecccccccCHhhhhcceecc
Confidence 221 111111111122234467777877766553 22234555543211 0011111 12
Q ss_pred cCCCcEEEcCCCCEEEEEeCCCCeEEEEEecC
Q 016199 235 YFANGVVLSPDQTHLVYCETSMRRCRKFYIKG 266 (393)
Q Consensus 235 ~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g 266 (393)
.++-.+.+||||++| ++....++++.|+.+.
T Consensus 433 Gys~~v~fSpDG~~l-~SGdsdG~v~~wdwkt 463 (503)
T KOG0282|consen 433 GYSCQVDFSPDGRTL-CSGDSDGKVNFWDWKT 463 (503)
T ss_pred CceeeEEEcCCCCeE-EeecCCccEEEeechh
Confidence 456778899999765 6666789999999864
No 149
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=97.01 E-value=0.13 Score=52.57 Aligned_cols=214 Identities=11% Similarity=0.088 Sum_probs=117.9
Q ss_pred CCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCceEEEeeccC
Q 016199 93 HSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNSTVLLTDEAE 172 (393)
Q Consensus 93 ~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g~~~l~~~~~ 172 (393)
++.+|.+|..|+.|.++...+.. . ...+........++....++ .+.-+.++..+.++-. | .+....+
T Consensus 70 ~~~~l~~g~~D~~i~v~~~~~~~--P-~~~LkgH~snVC~ls~~~~~------~~iSgSWD~TakvW~~-~--~l~~~l~ 137 (745)
T KOG0301|consen 70 DKGRLVVGGMDTTIIVFKLSQAE--P-LYTLKGHKSNVCSLSIGEDG------TLISGSWDSTAKVWRI-G--ELVYSLQ 137 (745)
T ss_pred cCcceEeecccceEEEEecCCCC--c-hhhhhccccceeeeecCCcC------ceEecccccceEEecc-h--hhhcccC
Confidence 44468899999999988876542 0 12222223456778888888 7666655544333322 1 1111233
Q ss_pred CccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEE
Q 016199 173 GQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYC 252 (393)
Q Consensus 173 g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~ 252 (393)
+.. ..+..++.-+++ .|+|- ++...|..+. .....+++........|+++-+++.++ +
T Consensus 138 gH~-asVWAv~~l~e~-~~vTg-----------------saDKtIklWk-~~~~l~tf~gHtD~VRgL~vl~~~~fl--S 195 (745)
T KOG0301|consen 138 GHT-ASVWAVASLPEN-TYVTG-----------------SADKTIKLWK-GGTLLKTFSGHTDCVRGLAVLDDSHFL--S 195 (745)
T ss_pred Ccc-hheeeeeecCCC-cEEec-----------------cCcceeeecc-CCchhhhhccchhheeeeEEecCCCeE--e
Confidence 333 234566666776 66763 2233344443 334445554455567889988886543 5
Q ss_pred eCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCC
Q 016199 253 ETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMG 332 (393)
Q Consensus 253 ~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 332 (393)
....+-|.+++++|+-. .... +...+--.|....++.+.|++.+.|+
T Consensus 196 csNDg~Ir~w~~~ge~l---~~~~-ghtn~vYsis~~~~~~~Ivs~gEDrt----------------------------- 242 (745)
T KOG0301|consen 196 CSNDGSIRLWDLDGEVL---LEMH-GHTNFVYSISMALSDGLIVSTGEDRT----------------------------- 242 (745)
T ss_pred ecCCceEEEEeccCcee---eeee-ccceEEEEEEecCCCCeEEEecCCce-----------------------------
Confidence 55667788888766521 1111 11112233444455668888887643
Q ss_pred CCCceEEEECCCCcEEEEeeCCCCCccEEEEEeCCEEEEEecCCCeEEE
Q 016199 333 KSSSGVFIVDLDGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILH 381 (393)
Q Consensus 333 ~~~~~v~~~d~~g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~~ 381 (393)
+...+ +++..+.+.-|....-+.-.-.+|.+++|+ ++++.|
T Consensus 243 -----lriW~-~~e~~q~I~lPttsiWsa~~L~NgDIvvg~--SDG~Vr 283 (745)
T KOG0301|consen 243 -----LRIWK-KDECVQVITLPTTSIWSAKVLLNGDIVVGG--SDGRVR 283 (745)
T ss_pred -----EEEee-cCceEEEEecCccceEEEEEeeCCCEEEec--cCceEE
Confidence 33333 347777777776332233334578888885 444444
No 150
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=96.97 E-value=0.31 Score=45.62 Aligned_cols=150 Identities=15% Similarity=0.157 Sum_probs=83.4
Q ss_pred CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCc--ceeeeeecCCCceeeeEECCCCCCCCceEEEEEeC-CCceEEE
Q 016199 83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPAD--SLVHNWINTGGRPLGIAFANSDPDADRITMIVADA-YKGLLKI 159 (393)
Q Consensus 83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~--~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~-~~gl~~i 159 (393)
..-.+++|+.||+.|-+.+.|+.|..|+.++-... .....-. ..+.|..++|.+|-. .+.|.-. +..|+.+
T Consensus 87 ~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~-----s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 87 KEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCK-----SVVVSVKRGNKLCVY 160 (420)
T ss_pred CceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcc-----eEEEEEccCCEEEEE
Confidence 45678999999998877788888888887753210 0000001 124688899998871 2333322 3334444
Q ss_pred --eC--Cc-eEEEeeccCCcccc---ccc--cEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE
Q 016199 160 --SG--NS-TVLLTDEAEGQKFK---LTD--GVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV 229 (393)
Q Consensus 160 --d~--~g-~~~l~~~~~g~~~~---~~~--~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~ 229 (393)
+. +| ........+...+. .+. ++-++ ++..|+..++. .-.|..|+.++..+..
T Consensus 161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA-~~~k~imsas~----------------dt~i~lw~lkGq~L~~ 223 (420)
T KOG2096|consen 161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA-GNAKYIMSASL----------------DTKICLWDLKGQLLQS 223 (420)
T ss_pred EeeecccCCCCcccccccccccchhcccceEEEeec-CCceEEEEecC----------------CCcEEEEecCCceeee
Confidence 32 33 11111111111111 111 22222 34455554332 2258889988655666
Q ss_pred EecCccCCCcEEEcCCCCEEEEEeCC
Q 016199 230 LVSDLYFANGVVLSPDQTHLVYCETS 255 (393)
Q Consensus 230 ~~~~l~~~ngi~~s~dg~~l~v~~~~ 255 (393)
+-+.......-+++|||+++.++...
T Consensus 224 idtnq~~n~~aavSP~GRFia~~gFT 249 (420)
T KOG2096|consen 224 IDTNQSSNYDAAVSPDGRFIAVSGFT 249 (420)
T ss_pred eccccccccceeeCCCCcEEEEecCC
Confidence 65555556778899999998887754
No 151
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.96 E-value=0.12 Score=49.41 Aligned_cols=142 Identities=12% Similarity=0.130 Sum_probs=79.7
Q ss_pred CEEEEEec-----CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC-----Cc-----eEEE
Q 016199 95 KLIYTGCE-----DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY-----KG-----LLKI 159 (393)
Q Consensus 95 ~~L~~~~~-----~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~-----~g-----l~~i 159 (393)
+++|+-+. .++++.+|.+.+. +......+-.+. +.++++| +.+|+++.+ +| |..+
T Consensus 3 ~rvyV~D~~~~~~~~rv~viD~d~~k----~lGmi~~g~~~~-~~~spdg-----k~~y~a~T~~sR~~rG~RtDvv~~~ 72 (342)
T PF06433_consen 3 HRVYVQDPVFFHMTSRVYVIDADSGK----LLGMIDTGFLGN-VALSPDG-----KTIYVAETFYSRGTRGERTDVVEIW 72 (342)
T ss_dssp TEEEEEE-GGGGSSEEEEEEETTTTE----EEEEEEEESSEE-EEE-TTS-----SEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred cEEEEECCccccccceEEEEECCCCc----EEEEeecccCCc-eeECCCC-----CEEEEEEEEEeccccccceeEEEEE
Confidence 35666542 3589999987665 444444333333 6677887 479988763 22 5667
Q ss_pred eCCceEEEee-ccCCc----cccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC
Q 016199 160 SGNSTVLLTD-EAEGQ----KFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD 233 (393)
Q Consensus 160 d~~g~~~l~~-~~~g~----~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~ 233 (393)
|.+++..... ..... .....+.++...|| .+||.+. ++.-.|-..|...+++...
T Consensus 73 D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~----------------TPa~SVtVVDl~~~kvv~e--- 133 (342)
T PF06433_consen 73 DTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNF----------------TPATSVTVVDLAAKKVVGE--- 133 (342)
T ss_dssp ETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEE----------------SSSEEEEEEETTTTEEEEE---
T ss_pred ecCcCcccceEecCCcchheecccccceEEccCCcEEEEEcc----------------CCCCeEEEEECCCCceeee---
Confidence 8776211110 11111 12345677888888 6888763 4566799999988776432
Q ss_pred ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199 234 LYFANGVVLSPDQTHLVYCETSMRRCRKFYIK 265 (393)
Q Consensus 234 l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~ 265 (393)
+..|-+..+-|-+..-+.+-+..+++..+.++
T Consensus 134 i~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld 165 (342)
T PF06433_consen 134 IDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLD 165 (342)
T ss_dssp EEGTSEEEEEEEETTEEEEEETTSCEEEEEET
T ss_pred ecCCCEEEEEecCCCceEEEecCCceEEEEEC
Confidence 23344433333332223455567888888887
No 152
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=96.95 E-value=0.097 Score=51.79 Aligned_cols=203 Identities=13% Similarity=0.125 Sum_probs=112.3
Q ss_pred CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCC-cceeeeeecC-CCceeeeEECCCCCCCCceEEEEEeCCCceEEEe
Q 016199 83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPA-DSLVHNWINT-GGRPLGIAFANSDPDADRITMIVADAYKGLLKIS 160 (393)
Q Consensus 83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~-~~~~~~~~~~-~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id 160 (393)
+.-..+++|+.|-+++.|+.|-.|..||.++-.. ...+..+.+. +.....+.+...| +.|++.......-.+|
T Consensus 168 k~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg-----~~iLvvsg~aqakl~D 242 (641)
T KOG0772|consen 168 KIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTG-----DQILVVSGSAQAKLLD 242 (641)
T ss_pred eEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCC-----CeEEEEecCcceeEEc
Confidence 4455689999999999999999999999876431 0112222221 2335678888877 2455554444456678
Q ss_pred CCceEEEe--e---------ccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEE
Q 016199 161 GNSTVLLT--D---------EAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETK 228 (393)
Q Consensus 161 ~~g~~~l~--~---------~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~ 228 (393)
.+|.+..- . ...|. ....+...+.|+. ..+++.+. .++-|+|-.+...++.+
T Consensus 243 RdG~~~~e~~KGDQYI~Dm~nTKGH-ia~lt~g~whP~~k~~FlT~s~---------------DgtlRiWdv~~~k~q~q 306 (641)
T KOG0772|consen 243 RDGFEIVEFSKGDQYIRDMYNTKGH-IAELTCGCWHPDNKEEFLTCSY---------------DGTLRIWDVNNTKSQLQ 306 (641)
T ss_pred cCCceeeeeeccchhhhhhhccCCc-eeeeeccccccCcccceEEecC---------------CCcEEEEecCCchhhee
Confidence 88832221 1 11111 1123344556654 45555421 23345555443323444
Q ss_pred EEec----Cc-cCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeec--cCCC-CCCeEEECCCCCEEEEEec
Q 016199 229 VLVS----DL-YFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIE--TLPG-LPDNIRYDGEGHYLIALAT 300 (393)
Q Consensus 229 ~~~~----~l-~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~--~l~g-~P~~i~~d~~G~lwva~~~ 300 (393)
++.. +. ..+..-++++||. ++.+.+.++.|..|+. +...-.....+. .++| --..|.++.+|+++.+-..
T Consensus 307 Vik~k~~~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~-~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~ 384 (641)
T KOG0772|consen 307 VIKTKPAGGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDK-GSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGF 384 (641)
T ss_pred EEeeccCCCcccCceeeecCCCcc-hhhhcccCCceeeeec-CCcccccceEeeeccCCCCceeEEEeccccchhhhccC
Confidence 4322 22 2356678999996 5778888999999886 322222222221 2332 1356889999998876443
Q ss_pred Ccc-hhhhh
Q 016199 301 EFS-TYWDL 308 (393)
Q Consensus 301 ~r~-~~~~~ 308 (393)
... .+||+
T Consensus 385 D~tLKvWDL 393 (641)
T KOG0772|consen 385 DDTLKVWDL 393 (641)
T ss_pred CCceeeeec
Confidence 322 35554
No 153
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=96.94 E-value=0.21 Score=49.50 Aligned_cols=185 Identities=13% Similarity=0.151 Sum_probs=101.7
Q ss_pred ceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeee----------ecCCCce---eeeEECCCCCCCCceEEEEEeC
Q 016199 86 EDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNW----------INTGGRP---LGIAFANSDPDADRITMIVADA 152 (393)
Q Consensus 86 e~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~----------~~~~~~p---~gl~~d~~G~~~~~~~L~v~~~ 152 (393)
.++.+.+.|+.+.+.+.......+|.++.. +-.+ .++.+.. ..-++.+.. +..++..+
T Consensus 218 ~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~----~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~-----k~~FlT~s 288 (641)
T KOG0772|consen 218 NSLQYSVTGDQILVVSGSAQAKLLDRDGFE----IVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDN-----KEEFLTCS 288 (641)
T ss_pred ceeeecCCCCeEEEEecCcceeEEccCCce----eeeeeccchhhhhhhccCCceeeeeccccccCc-----ccceEEec
Confidence 447788888877777766667777766643 2221 1222333 333456654 13444445
Q ss_pred CCceE-EEeCCc----eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeE
Q 016199 153 YKGLL-KISGNS----TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKET 227 (393)
Q Consensus 153 ~~gl~-~id~~g----~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~ 227 (393)
+.|-+ .++.+. .+++.....+..--.+...++++||.++.+- -..|.|-.|+..+...
T Consensus 289 ~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAag-----------------c~DGSIQ~W~~~~~~v 351 (641)
T KOG0772|consen 289 YDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAG-----------------CLDGSIQIWDKGSRTV 351 (641)
T ss_pred CCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhc-----------------ccCCceeeeecCCccc
Confidence 66644 445433 4555443333221235566889999875441 2346677777532222
Q ss_pred E--EEecC----ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCC-CCC-CeEEECCCCCEEEEEe
Q 016199 228 K--VLVSD----LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLP-GLP-DNIRYDGEGHYLIALA 299 (393)
Q Consensus 228 ~--~~~~~----l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~-g~P-~~i~~d~~G~lwva~~ 299 (393)
. ....+ ..-...|.|+.||+. +.+-...+.+-.|++...+. -..++ .+++ .+| .+.+++++..+.++-.
T Consensus 352 ~p~~~vk~AH~~g~~Itsi~FS~dg~~-LlSRg~D~tLKvWDLrq~kk-pL~~~-tgL~t~~~~tdc~FSPd~kli~TGt 428 (641)
T KOG0772|consen 352 RPVMKVKDAHLPGQDITSISFSYDGNY-LLSRGFDDTLKVWDLRQFKK-PLNVR-TGLPTPFPGTDCCFSPDDKLILTGT 428 (641)
T ss_pred ccceEeeeccCCCCceeEEEeccccch-hhhccCCCceeeeecccccc-chhhh-cCCCccCCCCccccCCCceEEEecc
Confidence 1 11222 234678999999964 45666678888899864321 11112 2343 233 4578999998777543
No 154
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.031 Score=49.24 Aligned_cols=100 Identities=15% Similarity=0.228 Sum_probs=63.1
Q ss_pred eeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc---eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhhee
Q 016199 130 PLGIAFANSDPDADRITMIVADAYKGLLKISGNS---TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYIL 206 (393)
Q Consensus 130 p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g---~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~ 206 (393)
-=|++.|.+ +||.++...-+..-||+. ...+.-..+|.|....|.+..- ||.+|.---
T Consensus 133 GWgLt~d~~-------~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw----------- 193 (262)
T COG3823 133 GWGLTSDDK-------NLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVW----------- 193 (262)
T ss_pred ceeeecCCc-------ceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeee-----------
Confidence 346666643 699987666677778876 1222224567776666666433 554443210
Q ss_pred hhcccCCCcEEEEEeCCCCeEEEEec-------------CccCCCcEEEcCCCCEEEEEeC
Q 016199 207 DIFEGKPNGRLLSFDPVTKETKVLVS-------------DLYFANGVVLSPDQTHLVYCET 254 (393)
Q Consensus 207 ~~~e~~~~g~l~~~d~~t~~~~~~~~-------------~l~~~ngi~~s~dg~~l~v~~~ 254 (393)
.+.++.|++|++|++....+ .....||||..++++.+|++.-
T Consensus 194 ------~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 194 ------QTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred ------eecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 01279999999998755321 1346799999999988888754
No 155
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.92 E-value=0.21 Score=48.96 Aligned_cols=194 Identities=12% Similarity=0.155 Sum_probs=105.8
Q ss_pred eEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCc-eEEEeCCceE
Q 016199 87 DLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKG-LLKISGNSTV 165 (393)
Q Consensus 87 ~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g-l~~id~~g~~ 165 (393)
+++++|..-.=++.+..-++..|+..+..- .+.+..-.....++.|-.|| +|+.|....| +-.+|.+...
T Consensus 31 sl~fsp~~P~d~aVt~S~rvqly~~~~~~~---~k~~srFk~~v~s~~fR~DG------~LlaaGD~sG~V~vfD~k~r~ 101 (487)
T KOG0310|consen 31 SLCFSPKHPYDFAVTSSVRVQLYSSVTRSV---RKTFSRFKDVVYSVDFRSDG------RLLAAGDESGHVKVFDMKSRV 101 (487)
T ss_pred eEecCCCCCCceEEecccEEEEEecchhhh---hhhHHhhccceeEEEeecCC------eEEEccCCcCcEEEeccccHH
Confidence 355555322112333344666666554320 12122223457889999999 8877755556 4455754310
Q ss_pred EEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE-EecCccCCCcEEEc
Q 016199 166 LLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV-LVSDLYFANGVVLS 243 (393)
Q Consensus 166 ~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~-~~~~l~~~ngi~~s 243 (393)
.+. ...... .-++-+.+.+.+ .++++- +..+-+..+|..+..... +...-.+....+++
T Consensus 102 iLR-~~~ah~-apv~~~~f~~~d~t~l~s~-----------------sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~ 162 (487)
T KOG0310|consen 102 ILR-QLYAHQ-APVHVTKFSPQDNTMLVSG-----------------SDDKVVKYWDLSTAYVQAELSGHTDYVRCGDIS 162 (487)
T ss_pred HHH-HHhhcc-CceeEEEecccCCeEEEec-----------------CCCceEEEEEcCCcEEEEEecCCcceeEeeccc
Confidence 111 111111 113455666655 444441 222334445666555432 22234456677888
Q ss_pred CCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCC-CeEEECCCCCEEEEEecCcchhhhhhhcC
Q 016199 244 PDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLP-DNIRYDGEGHYLIALATEFSTYWDLAYRY 312 (393)
Q Consensus 244 ~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P-~~i~~d~~G~lwva~~~~r~~~~~~~~~~ 312 (393)
|-.+++++++...+.|..||..... .....+- -|.| ..+..-+.|.+.+.+.++.-..||++...
T Consensus 163 ~~~~hivvtGsYDg~vrl~DtR~~~-~~v~eln---hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~ 228 (487)
T KOG0310|consen 163 PANDHIVVTGSYDGKVRLWDTRSLT-SRVVELN---HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGG 228 (487)
T ss_pred cCCCeEEEecCCCceEEEEEeccCC-ceeEEec---CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCc
Confidence 8888999999999999999975321 1111221 2334 56777778888887777777788887544
No 156
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.90 E-value=0.032 Score=57.80 Aligned_cols=156 Identities=12% Similarity=0.157 Sum_probs=98.6
Q ss_pred CCCceEEEecCCCEEE-EEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceE-EEe
Q 016199 83 KGPEDLLYDAHSKLIY-TGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLL-KIS 160 (393)
Q Consensus 83 ~~Pe~ia~d~~g~~L~-~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~-~id 160 (393)
..-.+++|.|-.++.| .|+-||++..|++.+.+ +..|.+...-..++++.|+| +..+|| ...|.. .|+
T Consensus 410 dfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~----Vv~W~Dl~~lITAvcy~PdG-----k~avIG-t~~G~C~fY~ 479 (712)
T KOG0283|consen 410 DFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK----VVDWNDLRDLITAVCYSPDG-----KGAVIG-TFNGYCRFYD 479 (712)
T ss_pred CeeEEEEecccCCCcEeecccccceEEeecCcCe----eEeehhhhhhheeEEeccCC-----ceEEEE-EeccEEEEEE
Confidence 3456788999555455 56679999999988776 77776666667899999999 235666 556654 456
Q ss_pred CCceEEE----eeccCC--ccccccccEEEcCCC--cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec
Q 016199 161 GNSTVLL----TDEAEG--QKFKLTDGVDVADDG--MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS 232 (393)
Q Consensus 161 ~~g~~~l----~~~~~g--~~~~~~~~l~~d~dG--~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~ 232 (393)
..+.+.. .....+ ..-.-+.|+.+.+.. .+.|| +...+|..||..+..+.....
T Consensus 480 t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVT------------------SnDSrIRI~d~~~~~lv~KfK 541 (712)
T KOG0283|consen 480 TEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVT------------------SNDSRIRIYDGRDKDLVHKFK 541 (712)
T ss_pred ccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEe------------------cCCCceEEEeccchhhhhhhc
Confidence 6551111 111111 111236688777533 58888 445688899975555444333
Q ss_pred Ccc---CCCcEEEcCCCCEEEEEeCCCCeEEEEEecCC
Q 016199 233 DLY---FANGVVLSPDQTHLVYCETSMRRCRKFYIKGK 267 (393)
Q Consensus 233 ~l~---~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~ 267 (393)
+.. ...--.|+.||++|+. .+....++.|+.+..
T Consensus 542 G~~n~~SQ~~Asfs~Dgk~IVs-~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 542 GFRNTSSQISASFSSDGKHIVS-ASEDSWVYIWKNDSF 578 (712)
T ss_pred ccccCCcceeeeEccCCCEEEE-eecCceEEEEeCCCC
Confidence 332 2344568889987754 457888999887543
No 157
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=96.89 E-value=0.013 Score=59.84 Aligned_cols=78 Identities=21% Similarity=0.278 Sum_probs=48.5
Q ss_pred ccccccccEEEcCCCcEEEEeCCCccchh-------hheehhcccCCCcEEEEEeCCCCeEEEEecC--ccCCCcEEEcC
Q 016199 174 QKFKLTDGVDVADDGMIYFTDASNKYYLR-------EYILDIFEGKPNGRLLSFDPVTKETKVLVSD--LYFANGVVLSP 244 (393)
Q Consensus 174 ~~~~~~~~l~~d~dG~l~~td~~~~~~~~-------~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~--l~~~ngi~~s~ 244 (393)
..+..|+.|+++++|+|||+.-....... ...+.+....+.. ++.+++.+++++.+... -....|++++|
T Consensus 433 ~~f~sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~-~~~~~~~~g~~~rf~~~P~gaE~tG~~fsp 511 (524)
T PF05787_consen 433 NGFASPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNN-VWAYDPDTGELKRFLVGPNGAEITGPCFSP 511 (524)
T ss_pred CCcCCCCceEECCCCCEEEEeCCCCCCcccccccccCceeeeeecccce-eeeccccccceeeeccCCCCcccccceECC
Confidence 34678999999999999998533221100 0001111111111 55667788888777543 34568999999
Q ss_pred CCCEEEEE
Q 016199 245 DQTHLVYC 252 (393)
Q Consensus 245 dg~~l~v~ 252 (393)
|++.||++
T Consensus 512 Dg~tlFvn 519 (524)
T PF05787_consen 512 DGRTLFVN 519 (524)
T ss_pred CCCEEEEE
Confidence 99999885
No 158
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=96.87 E-value=0.037 Score=53.08 Aligned_cols=177 Identities=10% Similarity=0.175 Sum_probs=101.7
Q ss_pred eEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeee-cCCCceeeeEECCCCCCCCceEEEEEeCCCceEEE-eCCc-
Q 016199 87 DLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWI-NTGGRPLGIAFANSDPDADRITMIVADAYKGLLKI-SGNS- 163 (393)
Q Consensus 87 ~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~-~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~i-d~~g- 163 (393)
.+.+.|+|++|.+|+..|..-.|+...-. ++.+. .......+|....+| ...|....+|..++ +++-
T Consensus 101 ~v~WtPeGRRLltgs~SGEFtLWNg~~fn----FEtilQaHDs~Vr~m~ws~~g------~wmiSgD~gG~iKyWqpnmn 170 (464)
T KOG0284|consen 101 VVRWTPEGRRLLTGSQSGEFTLWNGTSFN----FETILQAHDSPVRTMKWSHNG------TWMISGDKGGMIKYWQPNMN 170 (464)
T ss_pred eEEEcCCCceeEeecccccEEEecCceee----HHHHhhhhcccceeEEEccCC------CEEEEcCCCceEEecccchh
Confidence 47899999999999999988877754322 22221 112345788888898 66555445565555 4432
Q ss_pred -eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEE-EEecCccCCCcEE
Q 016199 164 -TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETK-VLVSDLYFANGVV 241 (393)
Q Consensus 164 -~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~-~~~~~l~~~ngi~ 241 (393)
++.. .......+.++++++....+++. +..|.|..+|..-.+-+ .+.....-+..++
T Consensus 171 nVk~~----~ahh~eaIRdlafSpnDskF~t~-----------------SdDg~ikiWdf~~~kee~vL~GHgwdVksvd 229 (464)
T KOG0284|consen 171 NVKII----QAHHAEAIRDLAFSPNDSKFLTC-----------------SDDGTIKIWDFRMPKEERVLRGHGWDVKSVD 229 (464)
T ss_pred hhHHh----hHhhhhhhheeccCCCCceeEEe-----------------cCCCeEEEEeccCCchhheeccCCCCcceec
Confidence 2111 11112345689999977777775 34567777775433333 3333344577888
Q ss_pred EcCCCCEEEEEeCCCCeEEEEEecCCCCcce-eeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199 242 LSPDQTHLVYCETSMRRCRKFYIKGKNAGRV-EKFIETLPGLPDNIRYDGEGHYLIALA 299 (393)
Q Consensus 242 ~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~-~~~~~~l~g~P~~i~~d~~G~lwva~~ 299 (393)
+.|.. .++++....+-|-.+|. +.++- -.+. .....--.+.+.++|++..+..
T Consensus 230 WHP~k-gLiasgskDnlVKlWDp---rSg~cl~tlh-~HKntVl~~~f~~n~N~Llt~s 283 (464)
T KOG0284|consen 230 WHPTK-GLIASGSKDNLVKLWDP---RSGSCLATLH-GHKNTVLAVKFNPNGNWLLTGS 283 (464)
T ss_pred cCCcc-ceeEEccCCceeEeecC---CCcchhhhhh-hccceEEEEEEcCCCCeeEEcc
Confidence 88876 56677776664444554 32221 1111 0011122356778887666544
No 159
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=96.86 E-value=0.061 Score=50.00 Aligned_cols=143 Identities=15% Similarity=0.210 Sum_probs=84.5
Q ss_pred ceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCce-
Q 016199 86 EDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNST- 164 (393)
Q Consensus 86 e~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g~- 164 (393)
.++.|.|....|..++.|+.|..||..........+.+.. ......|.|.|.| +.|.+|+...-+..+|-++.
T Consensus 176 n~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd-~~~vrsiSfHPsG-----efllvgTdHp~~rlYdv~T~Q 249 (430)
T KOG0640|consen 176 NDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQD-TEPVRSISFHPSG-----EFLLVGTDHPTLRLYDVNTYQ 249 (430)
T ss_pred cceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhc-cceeeeEeecCCC-----ceEEEecCCCceeEEecccee
Confidence 4577888887676777899888888754332222333322 3456899999999 24566643334455676662
Q ss_pred EEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE-E--ecCccCCCcEE
Q 016199 165 VLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV-L--VSDLYFANGVV 241 (393)
Q Consensus 165 ~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~-~--~~~l~~~ngi~ 241 (393)
..+....+......++.+...+.|+||++- +..|.|-.||-.+++... + +.+....-...
T Consensus 250 cfvsanPd~qht~ai~~V~Ys~t~~lYvTa-----------------SkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~ 312 (430)
T KOG0640|consen 250 CFVSANPDDQHTGAITQVRYSSTGSLYVTA-----------------SKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAV 312 (430)
T ss_pred EeeecCcccccccceeEEEecCCccEEEEe-----------------ccCCcEEeeccccHHHHHHHHhhcCCceeeeEE
Confidence 222223333334557788899999999995 445678888866544211 1 11222222344
Q ss_pred EcCCCCEEEE
Q 016199 242 LSPDQTHLVY 251 (393)
Q Consensus 242 ~s~dg~~l~v 251 (393)
|+.+|++++-
T Consensus 313 Ftkn~kyiLs 322 (430)
T KOG0640|consen 313 FTKNGKYILS 322 (430)
T ss_pred EccCCeEEee
Confidence 6777765543
No 160
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=96.86 E-value=0.12 Score=45.74 Aligned_cols=98 Identities=15% Similarity=0.167 Sum_probs=62.7
Q ss_pred cccEEEcCCCcEE-EEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCC--
Q 016199 179 TDGVDVADDGMIY-FTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETS-- 255 (393)
Q Consensus 179 ~~~l~~d~dG~l~-~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~-- 255 (393)
+++++..|+|+-+ +.. + .....+..||.+...+..+. -...|.|.++|+|+++.+++..
T Consensus 62 I~~~~WsP~g~~favi~-g---------------~~~~~v~lyd~~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~ 123 (194)
T PF08662_consen 62 IHDVAWSPNGNEFAVIY-G---------------SMPAKVTLYDVKGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNL 123 (194)
T ss_pred eEEEEECcCCCEEEEEE-c---------------cCCcccEEEcCcccEeEeec--CCCceEEEECCCCCEEEEEEccCC
Confidence 6789999999543 332 1 11236788887655444443 2456889999999999888754
Q ss_pred CCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199 256 MRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA 299 (393)
Q Consensus 256 ~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~ 299 (393)
.+.|..||.+.. +.+..........++.+++|++.++..
T Consensus 124 ~G~l~~wd~~~~-----~~i~~~~~~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 124 NGDLEFWDVRKK-----KKISTFEHSDATDVEWSPDGRYLATAT 162 (194)
T ss_pred CcEEEEEECCCC-----EEeeccccCcEEEEEEcCCCCEEEEEE
Confidence 457888887521 222211111245678899999887665
No 161
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=96.84 E-value=0.25 Score=48.47 Aligned_cols=165 Identities=13% Similarity=0.164 Sum_probs=88.5
Q ss_pred eeeEECCCCCCCCceEEEEEeCCC--------------ceEEEeCCceEEEeeccCC-----ccccccccEEEcCC-CcE
Q 016199 131 LGIAFANSDPDADRITMIVADAYK--------------GLLKISGNSTVLLTDEAEG-----QKFKLTDGVDVADD-GMI 190 (393)
Q Consensus 131 ~gl~~d~~G~~~~~~~L~v~~~~~--------------gl~~id~~g~~~l~~~~~g-----~~~~~~~~l~~d~d-G~l 190 (393)
..|++++|| +|||..... .+++++.++.........+ ...+++.+++++|. |.|
T Consensus 180 ~~l~f~pDG------~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~L 253 (399)
T COG2133 180 GRLVFGPDG------KLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGAL 253 (399)
T ss_pred ccEEECCCC------cEEEEeCCCCCcccccCccccccceeeeccCcccccCCCCCCcceEEeccCCccceeecCCCCcE
Confidence 469999999 999996543 1555555541011001111 12467889999996 899
Q ss_pred EEEeCCCccch-hhheehhcccCCCcEEEEE-----eCCC---CeEEE-E------ecCccCCCcEEEcCCC------CE
Q 016199 191 YFTDASNKYYL-REYILDIFEGKPNGRLLSF-----DPVT---KETKV-L------VSDLYFANGVVLSPDQ------TH 248 (393)
Q Consensus 191 ~~td~~~~~~~-~~~~~~~~e~~~~g~l~~~-----d~~t---~~~~~-~------~~~l~~~ngi~~s~dg------~~ 248 (393)
|+++-+.+..+ .+++..+-.+...|==++| |..- ..... . ...-.-|.|++|.... ..
T Consensus 254 w~~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~ 333 (399)
T COG2133 254 WTTEHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGD 333 (399)
T ss_pred EEEecCCCcccCcccccccccCCccCCceeccCcccCccccCCCcccccccCCceeeccccccceeEEecCCcCccccCc
Confidence 99986653221 1221111111111111222 1100 00000 0 0111235788887431 25
Q ss_pred EEEEeCCCCeEEEEEecCCCCcceeeeec-cCCCCCCeEEECCCCCEEEEEecC
Q 016199 249 LVYCETSMRRCRKFYIKGKNAGRVEKFIE-TLPGLPDNIRYDGEGHYLIALATE 301 (393)
Q Consensus 249 l~v~~~~~~ri~~~~~~g~~~~~~~~~~~-~l~g~P~~i~~d~~G~lwva~~~~ 301 (393)
++|..-..-.+.+.+++++..-..+.|+. ...+.|.++++.+||.++|++..+
T Consensus 334 lfV~~hgsw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~DGallv~~D~~ 387 (399)
T COG2133 334 LFVGAHGSWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAPDGALLVLTDQG 387 (399)
T ss_pred EEEEeecceeEEEeccCCCcceEEEEEEecCCCCcccceEECCCCeEEEeecCC
Confidence 77877666667777766552222333332 234789999999999999998753
No 162
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.81 E-value=0.44 Score=44.39 Aligned_cols=195 Identities=11% Similarity=0.102 Sum_probs=106.6
Q ss_pred ceeeeEECCCCCCCCceEEEEEeC-CCceEEEeCCc--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhhe
Q 016199 129 RPLGIAFANSDPDADRITMIVADA-YKGLLKISGNS--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYI 205 (393)
Q Consensus 129 ~p~gl~~d~~G~~~~~~~L~v~~~-~~gl~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~ 205 (393)
...++.++++- +.|+.... ...|+.++.+| +..+. ..+ +..+.+|..-.+|..-++|.
T Consensus 87 nvS~LTynp~~-----rtLFav~n~p~~iVElt~~GdlirtiP--L~g--~~DpE~Ieyig~n~fvi~dE---------- 147 (316)
T COG3204 87 NVSSLTYNPDT-----RTLFAVTNKPAAIVELTKEGDLIRTIP--LTG--FSDPETIEYIGGNQFVIVDE---------- 147 (316)
T ss_pred cccceeeCCCc-----ceEEEecCCCceEEEEecCCceEEEec--ccc--cCChhHeEEecCCEEEEEeh----------
Confidence 47789999876 24554432 34588889888 33321 122 34456777777777667752
Q ss_pred ehhcccCCCcEEEEEeCCCCeEEEE-----ecC----ccCCCcEEEcCCCCEEEEEeC-CCCeEEEEEecCCCCcceeee
Q 016199 206 LDIFEGKPNGRLLSFDPVTKETKVL-----VSD----LYFANGVVLSPDQTHLVYCET-SMRRCRKFYIKGKNAGRVEKF 275 (393)
Q Consensus 206 ~~~~e~~~~g~l~~~d~~t~~~~~~-----~~~----l~~~ngi~~s~dg~~l~v~~~-~~~ri~~~~~~g~~~~~~~~~ 275 (393)
....-.++++|+++.....- +.. ...--|++.+++++.+||+-. .--+|+.++..... ....
T Consensus 148 -----R~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~---l~~~ 219 (316)
T COG3204 148 -----RDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSS---LSVH 219 (316)
T ss_pred -----hcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcc---cccc
Confidence 22233355667665432211 111 223458999999887777643 33356665532110 1111
Q ss_pred eccCCCC--------CCeEEECCC-CCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCc
Q 016199 276 IETLPGL--------PDNIRYDGE-GHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGK 346 (393)
Q Consensus 276 ~~~l~g~--------P~~i~~d~~-G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~ 346 (393)
+...|.. -.++.+|+. |+++|=..++ ..|+.+|.+|+
T Consensus 220 ~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ES----------------------------------r~l~Evd~~G~ 265 (316)
T COG3204 220 ASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDES----------------------------------RRLLEVDLSGE 265 (316)
T ss_pred cccCcccccceEeeccccceecCCCCcEEEEecCC----------------------------------ceEEEEecCCC
Confidence 1011110 124556643 5677766554 46999999999
Q ss_pred EEEEeeC--CC-------CCccEEEEEeCCEEEEEecCCCeEEEEeCC
Q 016199 347 PIAHYYD--PE-------MSLISSAIKIGDHLYCGSVHHRGILHLDVN 385 (393)
Q Consensus 347 ~~~~~~d--~~-------~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~ 385 (393)
++..+.. +. .+.--.+..++|.||+.| ..+..+++-..
T Consensus 266 ~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvS-EPnlfy~F~~~ 312 (316)
T COG3204 266 VIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVS-EPNLFYRFTPQ 312 (316)
T ss_pred eeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEe-cCCcceecccC
Confidence 8766542 22 122223455679999998 34455666544
No 163
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=96.78 E-value=0.35 Score=47.91 Aligned_cols=147 Identities=16% Similarity=0.155 Sum_probs=94.1
Q ss_pred CceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCc-eEEEeCCc
Q 016199 85 PEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKG-LLKISGNS 163 (393)
Q Consensus 85 Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g-l~~id~~g 163 (393)
|+.++. ..++ ||+|+....|.+=+.+++. ......+ +..--|++..++. ++++.....+ +..++...
T Consensus 332 iRtv~e-~~~d-i~vGTtrN~iL~Gt~~~~f---~~~v~gh-~delwgla~hps~------~q~~T~gqdk~v~lW~~~k 399 (626)
T KOG2106|consen 332 IRTVAE-GKGD-ILVGTTRNFILQGTLENGF---TLTVQGH-GDELWGLATHPSK------NQLLTCGQDKHVRLWNDHK 399 (626)
T ss_pred eeEEec-CCCc-EEEeeccceEEEeeecCCc---eEEEEec-ccceeeEEcCCCh------hheeeccCcceEEEccCCc
Confidence 333443 3344 9999988878876666543 0222222 3456789999877 6777655444 44445322
Q ss_pred eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEc
Q 016199 164 TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLS 243 (393)
Q Consensus 164 ~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s 243 (393)
. .+....+. -+..++++|.|.+.++ +..|+.+.+|.++..+..+..+....+.+.++
T Consensus 400 ~-~wt~~~~d----~~~~~~fhpsg~va~G------------------t~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ys 456 (626)
T KOG2106|consen 400 L-EWTKIIED----PAECADFHPSGVVAVG------------------TATGRWFVLDTETQDLVTIHTDNEQLSVVRYS 456 (626)
T ss_pred e-eEEEEecC----ceeEeeccCcceEEEe------------------eccceEEEEecccceeEEEEecCCceEEEEEc
Confidence 1 12111111 1346788999977676 45789999999887666665555666889999
Q ss_pred CCCCEEEEEeCCCCeEEEEEecCC
Q 016199 244 PDQTHLVYCETSMRRCRKFYIKGK 267 (393)
Q Consensus 244 ~dg~~l~v~~~~~~ri~~~~~~g~ 267 (393)
|||.++-+ .+.++.|+.|.++..
T Consensus 457 p~G~~lAv-gs~d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 457 PDGAFLAV-GSHDNHIYIYRVSAN 479 (626)
T ss_pred CCCCEEEE-ecCCCeEEEEEECCC
Confidence 99976644 567888999988743
No 164
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=96.77 E-value=0.011 Score=59.12 Aligned_cols=74 Identities=22% Similarity=0.248 Sum_probs=47.2
Q ss_pred cccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC--ccCCCcEEEcCCCCEEEEE
Q 016199 175 KFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD--LYFANGVVLSPDQTHLVYC 252 (393)
Q Consensus 175 ~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~--l~~~ngi~~s~dg~~l~v~ 252 (393)
-+..|++|++|+.|+||+..-...-....+ .. +-..++.=+++++++..+... -+...|.+++||++.+||+
T Consensus 498 ~f~~PDnl~fD~~GrLWi~TDg~~s~~~~~----~~--G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~ 571 (616)
T COG3211 498 WFNSPDNLAFDPWGRLWIQTDGSGSTLRNR----FR--GVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVN 571 (616)
T ss_pred cccCCCceEECCCCCEEEEecCCCCccCcc----cc--cccccccCCCccceeeeeccCCCcceeecceeCCCCceEEEE
Confidence 367799999999999999754332111110 00 111334446677777666543 2456899999999999887
Q ss_pred eC
Q 016199 253 ET 254 (393)
Q Consensus 253 ~~ 254 (393)
-.
T Consensus 572 vQ 573 (616)
T COG3211 572 VQ 573 (616)
T ss_pred ec
Confidence 54
No 165
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.74 E-value=0.82 Score=46.60 Aligned_cols=42 Identities=14% Similarity=0.244 Sum_probs=28.5
Q ss_pred ceEEEECC-CCcEEEEeeCCC-CCccEEEEEeCCEEEEEecCCC
Q 016199 336 SGVFIVDL-DGKPIAHYYDPE-MSLISSAIKIGDHLYCGSVHHR 377 (393)
Q Consensus 336 ~~v~~~d~-~g~~~~~~~d~~-~~~~~~~~~~~g~Lyigs~~~~ 377 (393)
+.|+.+|. +|+++..++.+. ...--.+...+|++|++...+.
T Consensus 416 G~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~~yv~~~~g~ 459 (488)
T cd00216 416 GYFRAFDATTGKELWKFRTPSGIQATPMTYEVNGKQYVGVMVGG 459 (488)
T ss_pred CeEEEEECCCCceeeEEECCCCceEcCEEEEeCCEEEEEEEecC
Confidence 46899996 689988887654 2111222356899999987663
No 166
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=96.74 E-value=0.23 Score=48.38 Aligned_cols=133 Identities=20% Similarity=0.277 Sum_probs=78.5
Q ss_pred cEEEEEeCCCCeEEEEec-------CccCCCcEEEcC---CCCEEEEEeCCCCeEEEEEecCCCCcc-----eeeeeccC
Q 016199 215 GRLLSFDPVTKETKVLVS-------DLYFANGVVLSP---DQTHLVYCETSMRRCRKFYIKGKNAGR-----VEKFIETL 279 (393)
Q Consensus 215 g~l~~~d~~t~~~~~~~~-------~l~~~ngi~~s~---dg~~l~v~~~~~~ri~~~~~~g~~~~~-----~~~~~~~l 279 (393)
-++|++|+.++.++.+.+ .+.-+.|+|+.. +|+...+.....+++..|.+.....+. .+.| .+
T Consensus 129 l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f--~~ 206 (381)
T PF02333_consen 129 LRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREF--KV 206 (381)
T ss_dssp EEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEE--E-
T ss_pred EEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEe--cC
Confidence 468999998887776532 344578999853 455444444556889888885322222 2333 35
Q ss_pred CCCCCeEEECCC-CCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCC--C----cEEEEee
Q 016199 280 PGLPDNIRYDGE-GHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLD--G----KPIAHYY 352 (393)
Q Consensus 280 ~g~P~~i~~d~~-G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~--g----~~~~~~~ 352 (393)
+..+.|+++|.. |.+|++.-. .||.+|+.+ + +.+...
T Consensus 207 ~sQ~EGCVVDDe~g~LYvgEE~-----------------------------------~GIW~y~Aep~~~~~~~~v~~~- 250 (381)
T PF02333_consen 207 GSQPEGCVVDDETGRLYVGEED-----------------------------------VGIWRYDAEPEGGNDRTLVASA- 250 (381)
T ss_dssp SS-EEEEEEETTTTEEEEEETT-----------------------------------TEEEEEESSCCC-S--EEEEEB-
T ss_pred CCcceEEEEecccCCEEEecCc-----------------------------------cEEEEEecCCCCCCcceeeecc-
Confidence 567889888765 789998753 378888643 2 222221
Q ss_pred CCC-----CCccEEEEEe--CCEEEEEecCCCeEEEEeCC
Q 016199 353 DPE-----MSLISSAIKI--GDHLYCGSVHHRGILHLDVN 385 (393)
Q Consensus 353 d~~-----~~~~~~~~~~--~g~Lyigs~~~~~i~~~~~~ 385 (393)
+.. ...++.+... .|+|.++|=.++....|+..
T Consensus 251 ~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~ 290 (381)
T PF02333_consen 251 DGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDRE 290 (381)
T ss_dssp SSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESS
T ss_pred cccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecC
Confidence 221 3344444332 37899988888888888865
No 167
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=96.72 E-value=0.054 Score=48.95 Aligned_cols=177 Identities=13% Similarity=0.175 Sum_probs=97.3
Q ss_pred ceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECC-CCCCCCceEEEEEeCCCceEEEeCC-c
Q 016199 86 EDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFAN-SDPDADRITMIVADAYKGLLKISGN-S 163 (393)
Q Consensus 86 e~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~-~G~~~~~~~L~v~~~~~gl~~id~~-g 163 (393)
..++|+.|.+.|.+|..+.-+..|+.+....+ .+.+....+...-+.+-. +. .++-+...+.|..+|-. |
T Consensus 104 k~~af~~ds~~lltgg~ekllrvfdln~p~Ap--p~E~~ghtg~Ir~v~wc~eD~------~iLSSadd~tVRLWD~rTg 175 (334)
T KOG0278|consen 104 KAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAP--PKEISGHTGGIRTVLWCHEDK------CILSSADDKTVRLWDHRTG 175 (334)
T ss_pred eeEEecccchhhhccchHHHhhhhhccCCCCC--chhhcCCCCcceeEEEeccCc------eEEeeccCCceEEEEeccC
Confidence 34788888888888876664445555543311 122211122222233333 33 45544333445556643 3
Q ss_pred --eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec-Cc-cCCCc
Q 016199 164 --TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS-DL-YFANG 239 (393)
Q Consensus 164 --~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~-~l-~~~ng 239 (393)
++.+- .. ..++.+.+.+||++.... ..+.|.-+|+++-. .+.. .+ ...+.
T Consensus 176 t~v~sL~--~~----s~VtSlEvs~dG~ilTia------------------~gssV~Fwdaksf~--~lKs~k~P~nV~S 229 (334)
T KOG0278|consen 176 TEVQSLE--FN----SPVTSLEVSQDGRILTIA------------------YGSSVKFWDAKSFG--LLKSYKMPCNVES 229 (334)
T ss_pred cEEEEEe--cC----CCCcceeeccCCCEEEEe------------------cCceeEEecccccc--ceeeccCcccccc
Confidence 22221 11 236788899999876542 13357777876422 2211 11 12345
Q ss_pred EEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199 240 VVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA 299 (393)
Q Consensus 240 i~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~ 299 (393)
-.+.|+. .+||+.-....+++||.... .....+..+.+|---.+.+.++|.+|..-.
T Consensus 230 ASL~P~k-~~fVaGged~~~~kfDy~Tg--eEi~~~nkgh~gpVhcVrFSPdGE~yAsGS 286 (334)
T KOG0278|consen 230 ASLHPKK-EFFVAGGEDFKVYKFDYNTG--EEIGSYNKGHFGPVHCVRFSPDGELYASGS 286 (334)
T ss_pred ccccCCC-ceEEecCcceEEEEEeccCC--ceeeecccCCCCceEEEEECCCCceeeccC
Confidence 5678887 68899988899999998632 123334344454345677888888776443
No 168
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.72 E-value=0.3 Score=50.86 Aligned_cols=109 Identities=14% Similarity=0.163 Sum_probs=66.4
Q ss_pred eeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc---eEEEeeccCCccccccccEEEcC-CCcEEEEeCCCccchhhhe
Q 016199 130 PLGIAFANSDPDADRITMIVADAYKGLLKISGNS---TVLLTDEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYI 205 (393)
Q Consensus 130 p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g---~~~l~~~~~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~ 205 (393)
.+.|....++ .|+-+..+.-+-.+++.. +..+.. ..++..|++.| |.+.+++-
T Consensus 372 ILDlSWSKn~------fLLSSSMDKTVRLWh~~~~~CL~~F~H------ndfVTcVaFnPvDDryFiSG----------- 428 (712)
T KOG0283|consen 372 ILDLSWSKNN------FLLSSSMDKTVRLWHPGRKECLKVFSH------NDFVTCVAFNPVDDRYFISG----------- 428 (712)
T ss_pred heecccccCC------eeEeccccccEEeecCCCcceeeEEec------CCeeEEEEecccCCCcEeec-----------
Confidence 3556666666 555554455444444432 333321 24678899999 44655552
Q ss_pred ehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCC
Q 016199 206 LDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKN 268 (393)
Q Consensus 206 ~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~ 268 (393)
.-.+.+..++....++....+--.....+++.|||+..+ .++.+|.+..|+..+.+
T Consensus 429 ------SLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~av-IGt~~G~C~fY~t~~lk 484 (712)
T KOG0283|consen 429 ------SLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAV-IGTFNGYCRFYDTEGLK 484 (712)
T ss_pred ------ccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEE-EEEeccEEEEEEccCCe
Confidence 334556666655555544443335578899999997664 46678888888877654
No 169
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.71 E-value=0.24 Score=49.38 Aligned_cols=148 Identities=19% Similarity=0.170 Sum_probs=85.5
Q ss_pred EEecCCCEE-EEEecC---CeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCc---eEEEeC
Q 016199 89 LYDAHSKLI-YTGCED---GWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKG---LLKISG 161 (393)
Q Consensus 89 a~d~~g~~L-~~~~~~---g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g---l~~id~ 161 (393)
++.++++.+ |..-.. .+++.++.+++. ........+.-....+.+|| ++|.++....| |+.+|.
T Consensus 199 ~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~----~~~i~~~~g~~~~P~fspDG-----~~l~f~~~rdg~~~iy~~dl 269 (425)
T COG0823 199 AWSPDGKKLAYVSFELGGCPRIYYLDLNTGK----RPVILNFNGNNGAPAFSPDG-----SKLAFSSSRDGSPDIYLMDL 269 (425)
T ss_pred ccCcCCCceEEEEEecCCCceEEEEeccCCc----cceeeccCCccCCccCCCCC-----CEEEEEECCCCCccEEEEcC
Confidence 455565532 332222 247777777665 33333323334456677888 35655544333 888888
Q ss_pred Cc--eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCC
Q 016199 162 NS--TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFAN 238 (393)
Q Consensus 162 ~g--~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~n 238 (393)
++ .+.+. ...+... .=.+.||| .|+|+... .+.-.||+++++++..+.+........
T Consensus 270 ~~~~~~~Lt-~~~gi~~----~Ps~spdG~~ivf~Sdr---------------~G~p~I~~~~~~g~~~~riT~~~~~~~ 329 (425)
T COG0823 270 DGKNLPRLT-NGFGINT----SPSWSPDGSKIVFTSDR---------------GGRPQIYLYDLEGSQVTRLTFSGGGNS 329 (425)
T ss_pred CCCcceecc-cCCcccc----CccCCCCCCEEEEEeCC---------------CCCcceEEECCCCCceeEeeccCCCCc
Confidence 77 33332 2222110 12467888 57776322 122369999999888877766554444
Q ss_pred cEEEcCCCCEEEEEeCCCCe--EEEEEec
Q 016199 239 GVVLSPDQTHLVYCETSMRR--CRKFYIK 265 (393)
Q Consensus 239 gi~~s~dg~~l~v~~~~~~r--i~~~~~~ 265 (393)
.-.++|||+.+.+.....+. |..+++.
T Consensus 330 ~p~~SpdG~~i~~~~~~~g~~~i~~~~~~ 358 (425)
T COG0823 330 NPVWSPDGDKIVFESSSGGQWDIDKNDLA 358 (425)
T ss_pred CccCCCCCCEEEEEeccCCceeeEEeccC
Confidence 56689999988888754454 5666653
No 170
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=96.67 E-value=0.0066 Score=39.10 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=33.7
Q ss_pred EecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCC
Q 016199 230 LVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGK 267 (393)
Q Consensus 230 ~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~ 267 (393)
+..++..|+|+++++.++.+||++.....|.+++++|.
T Consensus 4 ~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~ 41 (43)
T smart00135 4 LSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41 (43)
T ss_pred EECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence 34567889999999999999999999999999998764
No 171
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=0.35 Score=51.06 Aligned_cols=132 Identities=17% Similarity=0.288 Sum_probs=83.5
Q ss_pred CccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEE
Q 016199 80 GVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKI 159 (393)
Q Consensus 80 g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~i 159 (393)
|.+..-.++.|+|..+++...+.|+.|..||.+..+ .++.+....+|-=-++..|+. +||.|.++.|+..+
T Consensus 248 gH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt---~v~tfrrendRFW~laahP~l------NLfAAgHDsGm~VF 318 (1202)
T KOG0292|consen 248 GHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT---SVQTFRRENDRFWILAAHPEL------NLFAAGHDSGMIVF 318 (1202)
T ss_pred cccCCcceEEecCccceeEecCCCccEEEEeccccc---ceeeeeccCCeEEEEEecCCc------ceeeeecCCceEEE
Confidence 555667788999988766666678889999987654 256665445666678888888 89999888886655
Q ss_pred eCCceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec--C----
Q 016199 160 SGNSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS--D---- 233 (393)
Q Consensus 160 d~~g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~--~---- 233 (393)
-.+. ..| ..++..++.+|+-+ ..|..||..+.+-..+.. .
T Consensus 319 kleR---------Erp-----a~~v~~n~LfYvkd--------------------~~i~~~d~~t~~d~~v~~lr~~g~~ 364 (1202)
T KOG0292|consen 319 KLER---------ERP-----AYAVNGNGLFYVKD--------------------RFIRSYDLRTQKDTAVASLRRPGTL 364 (1202)
T ss_pred EEcc---------cCc-----eEEEcCCEEEEEcc--------------------ceEEeeeccccccceeEeccCCCcc
Confidence 3321 011 23444444555543 357778876643333221 1
Q ss_pred ccCCCcEEEcCCCCEEEEEeC
Q 016199 234 LYFANGVVLSPDQTHLVYCET 254 (393)
Q Consensus 234 l~~~ngi~~s~dg~~l~v~~~ 254 (393)
...+..+.+.|-...+++|..
T Consensus 365 ~~~~~smsYNpae~~vlics~ 385 (1202)
T KOG0292|consen 365 WQPPRSLSYNPAENAVLICSN 385 (1202)
T ss_pred cCCcceeeeccccCeEEEEec
Confidence 133566888888777777743
No 172
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=96.54 E-value=0.25 Score=48.23 Aligned_cols=148 Identities=12% Similarity=0.088 Sum_probs=85.5
Q ss_pred eEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeee-eecCCCceeeeEECCCCCCCCceEEEEEeCCCc-eEEEeC---
Q 016199 87 DLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHN-WINTGGRPLGIAFANSDPDADRITMIVADAYKG-LLKISG--- 161 (393)
Q Consensus 87 ~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~-~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g-l~~id~--- 161 (393)
+++-+++|..|+.|+..|.||.|...++. .-. +....-....|.|..|| ..+|....+| |..+..
T Consensus 86 al~s~n~G~~l~ag~i~g~lYlWelssG~----LL~v~~aHYQ~ITcL~fs~dg------s~iiTgskDg~V~vW~l~~l 155 (476)
T KOG0646|consen 86 ALASSNLGYFLLAGTISGNLYLWELSSGI----LLNVLSAHYQSITCLKFSDDG------SHIITGSKDGAVLVWLLTDL 155 (476)
T ss_pred eeecCCCceEEEeecccCcEEEEEecccc----HHHHHHhhccceeEEEEeCCC------cEEEecCCCccEEEEEEEee
Confidence 36778888877777789999999998875 222 21222346789999999 7777766555 443321
Q ss_pred ---Cc---eEEEeeccCCccccccccEEEcCCC---cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec
Q 016199 162 ---NS---TVLLTDEAEGQKFKLTDGVDVADDG---MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS 232 (393)
Q Consensus 162 ---~g---~~~l~~~~~g~~~~~~~~l~~d~dG---~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~ 232 (393)
+. ...+. ...+.. ..+.++.++..| ++|-+ | ....+-.||...+.+-.-..
T Consensus 156 v~a~~~~~~~p~~-~f~~Ht-lsITDl~ig~Gg~~~rl~Ta--S----------------~D~t~k~wdlS~g~LLlti~ 215 (476)
T KOG0646|consen 156 VSADNDHSVKPLH-IFSDHT-LSITDLQIGSGGTNARLYTA--S----------------EDRTIKLWDLSLGVLLLTIT 215 (476)
T ss_pred cccccCCCcccee-eeccCc-ceeEEEEecCCCccceEEEe--c----------------CCceEEEEEeccceeeEEEe
Confidence 11 11110 111111 224566666544 33332 1 22345566766664322111
Q ss_pred CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199 233 DLYFANGVVLSPDQTHLVYCETSMRRCRKFYIK 265 (393)
Q Consensus 233 ~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~ 265 (393)
--..++.++++|-++.+|+. +..+.|+...+.
T Consensus 216 fp~si~av~lDpae~~~yiG-t~~G~I~~~~~~ 247 (476)
T KOG0646|consen 216 FPSSIKAVALDPAERVVYIG-TEEGKIFQNLLF 247 (476)
T ss_pred cCCcceeEEEcccccEEEec-CCcceEEeeehh
Confidence 12346889999999777664 457888887765
No 173
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=96.51 E-value=0.25 Score=48.30 Aligned_cols=161 Identities=14% Similarity=0.117 Sum_probs=92.2
Q ss_pred ccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCC------CcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCC
Q 016199 81 VLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSP------ADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYK 154 (393)
Q Consensus 81 ~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~------~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~ 154 (393)
.++.-.++.|..||.++++|+.||.|..|..-+-. ...-...|....-....+..+.-| .+-+||-+..++
T Consensus 122 HYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg---~~~rl~TaS~D~ 198 (476)
T KOG0646|consen 122 HYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGG---TNARLYTASEDR 198 (476)
T ss_pred hccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCC---ccceEEEecCCc
Confidence 34667889999999999999999998887653211 001122232222233444444322 111677775555
Q ss_pred ceEEEeCCceEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeC-----------
Q 016199 155 GLLKISGNSTVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDP----------- 222 (393)
Q Consensus 155 gl~~id~~g~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~----------- 222 (393)
-+-.+|...-..+..-.-. ..++.+++||.+ .+|++.. .|.++..+.
T Consensus 199 t~k~wdlS~g~LLlti~fp---~si~av~lDpae~~~yiGt~------------------~G~I~~~~~~~~~~~~~~v~ 257 (476)
T KOG0646|consen 199 TIKLWDLSLGVLLLTITFP---SSIKAVALDPAERVVYIGTE------------------EGKIFQNLLFKLSGQSAGVN 257 (476)
T ss_pred eEEEEEeccceeeEEEecC---CcceeEEEcccccEEEecCC------------------cceEEeeehhcCCccccccc
Confidence 5666666541122211111 235789999977 6888743 233333322
Q ss_pred ------CCCeEEEEecCcc--CCCcEEEcCCCCEEEEEeCCCCeEEEEEecC
Q 016199 223 ------VTKETKVLVSDLY--FANGVVLSPDQTHLVYCETSMRRCRKFYIKG 266 (393)
Q Consensus 223 ------~t~~~~~~~~~l~--~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g 266 (393)
..-+...+..+-. ....++++-|| .++++....+.++.|++..
T Consensus 258 ~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg-tlLlSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 258 QKGRHEENTQINVLVGHENESAITCLAISTDG-TLLLSGDEDGKVCVWDIYS 308 (476)
T ss_pred ccccccccceeeeeccccCCcceeEEEEecCc-cEEEeeCCCCCEEEEecch
Confidence 1112222222222 45678999999 6788888899999999853
No 174
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.49 E-value=1.3 Score=45.65 Aligned_cols=233 Identities=15% Similarity=0.177 Sum_probs=123.5
Q ss_pred CCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC----------
Q 016199 84 GPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY---------- 153 (393)
Q Consensus 84 ~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~---------- 153 (393)
--.++++.|||..|.++. +.+++.||++++. ............+.++...|| +.+...+.
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~---llqtLKgHKDtVycVAys~dG------krFASG~aDK~VI~W~~k 83 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGT---LLQPLKGHKDTVYCVAYAKDG------KRFASGSADKSVIIWTSK 83 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcc---cccccccccceEEEEEEccCC------ceeccCCCceeEEEeccc
Confidence 345689999998776554 5579999998764 133333333457788888888 55544322
Q ss_pred -CceEEEeCCc-eEEEeecc------------------CC------ccccccccEEEcCCCcEEEEeCCCccchhhheeh
Q 016199 154 -KGLLKISGNS-TVLLTDEA------------------EG------QKFKLTDGVDVADDGMIYFTDASNKYYLREYILD 207 (393)
Q Consensus 154 -~gl~~id~~g-~~~l~~~~------------------~g------~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~ 207 (393)
.|+++++... .+-...+. +. .....+++-....||.+++-
T Consensus 84 lEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylal-------------- 149 (1081)
T KOG1538|consen 84 LEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLAL-------------- 149 (1081)
T ss_pred ccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEE--------------
Confidence 2344443221 11111000 00 00112334445556643332
Q ss_pred hcccCCCcEEEEEeCCCCeEEE-Eec---CccCCCcEEEcCCC-----CEEEEEeCCCCeEEEEEecCCCCcceeeeecc
Q 016199 208 IFEGKPNGRLLSFDPVTKETKV-LVS---DLYFANGVVLSPDQ-----THLVYCETSMRRCRKFYIKGKNAGRVEKFIET 278 (393)
Q Consensus 208 ~~e~~~~g~l~~~d~~t~~~~~-~~~---~l~~~ngi~~s~dg-----~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~ 278 (393)
+..+|.+-..+. +++-+. +.+ .....-+|+++|.. +.+-|.+ ++.++.-|.++|.-.++.+ +
T Consensus 150 ---G~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~D-W~qTLSFy~LsG~~Igk~r----~ 220 (1081)
T KOG1538|consen 150 ---GMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVAD-WGQTLSFYQLSGKQIGKDR----A 220 (1081)
T ss_pred ---eccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEe-ccceeEEEEecceeecccc----c
Confidence 134455544443 333222 222 23344678887652 3555665 5678999998876433222 2
Q ss_pred CCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCCCCc
Q 016199 279 LPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPEMSL 358 (393)
Q Consensus 279 l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~~~~ 358 (393)
+.--|-.|..-.+|.+..-.... +++-.|..+|-.+-.+.+-+.+.
T Consensus 221 L~FdP~CisYf~NGEy~LiGGsd----------------------------------k~L~~fTR~GvrLGTvg~~D~WI 266 (1081)
T KOG1538|consen 221 LNFDPCCISYFTNGEYILLGGSD----------------------------------KQLSLFTRDGVRLGTVGEQDSWI 266 (1081)
T ss_pred CCCCchhheeccCCcEEEEccCC----------------------------------CceEEEeecCeEEeeccccceeE
Confidence 22236777777788855432211 45777788887777766544333
Q ss_pred cEEEEEeCCE-EEEEecCCCeEEEEeC
Q 016199 359 ISSAIKIGDH-LYCGSVHHRGILHLDV 384 (393)
Q Consensus 359 ~~~~~~~~g~-Lyigs~~~~~i~~~~~ 384 (393)
-+.....++. .-+|. ....|+.+++
T Consensus 267 WtV~~~PNsQ~v~~GC-qDGTiACyNl 292 (1081)
T KOG1538|consen 267 WTVQAKPNSQYVVVGC-QDGTIACYNL 292 (1081)
T ss_pred EEEEEccCCceEEEEE-ccCeeehhhh
Confidence 3333444444 44554 5667777765
No 175
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=96.49 E-value=0.005 Score=36.18 Aligned_cols=18 Identities=44% Similarity=0.757 Sum_probs=16.5
Q ss_pred cccccEEEcCCCcEEEEe
Q 016199 177 KLTDGVDVADDGMIYFTD 194 (393)
Q Consensus 177 ~~~~~l~~d~dG~l~~td 194 (393)
..|++|+++++|+||++|
T Consensus 2 ~~P~gvav~~~g~i~VaD 19 (28)
T PF01436_consen 2 NYPHGVAVDSDGNIYVAD 19 (28)
T ss_dssp SSEEEEEEETTSEEEEEE
T ss_pred cCCcEEEEeCCCCEEEEE
Confidence 468899999999999998
No 176
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.46 E-value=0.16 Score=46.94 Aligned_cols=186 Identities=15% Similarity=0.194 Sum_probs=89.8
Q ss_pred EecCCCEEEEEecC-----CeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceE-------
Q 016199 90 YDAHSKLIYTGCED-----GWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLL------- 157 (393)
Q Consensus 90 ~d~~g~~L~~~~~~-----g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~------- 157 (393)
|++||..||..-.| |-|-.|+...+- ..+-.|...+-.|+.+.+-+|| ++.+.. .+||-
T Consensus 121 fs~dG~~LYATEndfd~~rGViGvYd~r~~f--qrvgE~~t~GiGpHev~lm~DG------rtlvva-nGGIethpdfgR 191 (366)
T COG3490 121 FSPDGRLLYATENDFDPNRGVIGVYDAREGF--QRVGEFSTHGIGPHEVTLMADG------RTLVVA-NGGIETHPDFGR 191 (366)
T ss_pred cCCCCcEEEeecCCCCCCCceEEEEeccccc--ceecccccCCcCcceeEEecCC------cEEEEe-CCceecccccCc
Confidence 67788777754321 212233322110 0133344446679999999999 666553 33322
Q ss_pred -EEeCCce---EEEeeccCC-----------ccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeC
Q 016199 158 -KISGNST---VLLTDEAEG-----------QKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDP 222 (393)
Q Consensus 158 -~id~~g~---~~l~~~~~g-----------~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~ 222 (393)
.++.+.+ -++.+...| .....+..+++++||++|++.-.. -.-.+.. -|.-.-.
T Consensus 192 ~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~--------G~~~d~p---pLvg~~~ 260 (366)
T COG3490 192 TELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYR--------GPRNDLP---PLVGHFR 260 (366)
T ss_pred cccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEee--------CCCccCC---cceeecc
Confidence 2222220 011111111 112345678999999999996321 1111111 1222222
Q ss_pred CCCeEEEEecC-------ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEE
Q 016199 223 VTKETKVLVSD-------LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYL 295 (393)
Q Consensus 223 ~t~~~~~~~~~-------l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lw 295 (393)
+++.++.+.-. -.+.-.|++..+.+.+-++.-..++...+|.+ ++...... .++. ..|++.+..| +-
T Consensus 261 ~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~---tG~vv~~a-~l~d-aaGva~~~~g-f~ 334 (366)
T COG3490 261 KGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAA---TGAVVSEA-ALPD-AAGVAAAKGG-FA 334 (366)
T ss_pred CCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcC---CCcEEecc-cccc-cccceeccCc-eE
Confidence 33444332110 23455677776666777777777788888863 34332221 2221 2355555433 55
Q ss_pred EEEecC
Q 016199 296 IALATE 301 (393)
Q Consensus 296 va~~~~ 301 (393)
|++..+
T Consensus 335 vssg~G 340 (366)
T COG3490 335 VSSGQG 340 (366)
T ss_pred EecCCc
Confidence 555544
No 177
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=96.43 E-value=0.91 Score=43.28 Aligned_cols=147 Identities=12% Similarity=0.111 Sum_probs=85.3
Q ss_pred eEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCc-eEEEeCCc--
Q 016199 87 DLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKG-LLKISGNS-- 163 (393)
Q Consensus 87 ~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g-l~~id~~g-- 163 (393)
+++.+|+.+.+-+|..|..-+.|+..++. . .............+.|..+| .+++...-.| |..+..+.
T Consensus 69 avsl~P~~~l~aTGGgDD~AflW~~~~ge--~-~~eltgHKDSVt~~~Fshdg------tlLATGdmsG~v~v~~~stg~ 139 (399)
T KOG0296|consen 69 AVSLHPNNNLVATGGGDDLAFLWDISTGE--F-AGELTGHKDSVTCCSFSHDG------TLLATGDMSGKVLVFKVSTGG 139 (399)
T ss_pred EEEeCCCCceEEecCCCceEEEEEccCCc--c-eeEecCCCCceEEEEEccCc------eEEEecCCCccEEEEEcccCc
Confidence 46778876655566667777777776554 1 22222234567888999999 6655533334 44444332
Q ss_pred -eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCC-eEEEEecCccCCCcEE
Q 016199 164 -TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTK-ETKVLVSDLYFANGVV 241 (393)
Q Consensus 164 -~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~-~~~~~~~~l~~~ngi~ 241 (393)
...+....++ +.-+...|.+.++++- ...|.+|.|....+ ..+.+.......+.=.
T Consensus 140 ~~~~~~~e~~d-----ieWl~WHp~a~illAG-----------------~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~ 197 (399)
T KOG0296|consen 140 EQWKLDQEVED-----IEWLKWHPRAHILLAG-----------------STDGSVWMWQIPSQALCKVMSGHNSPCTCGE 197 (399)
T ss_pred eEEEeecccCc-----eEEEEecccccEEEee-----------------cCCCcEEEEECCCcceeeEecCCCCCccccc
Confidence 2222111111 2234567777666652 45678999987664 3333333333344456
Q ss_pred EcCCCCEEEEEeCCCCeEEEEEec
Q 016199 242 LSPDQTHLVYCETSMRRCRKFYIK 265 (393)
Q Consensus 242 ~s~dg~~l~v~~~~~~ri~~~~~~ 265 (393)
|.|||+.+.... .++.|..|+++
T Consensus 198 f~pdGKr~~tgy-~dgti~~Wn~k 220 (399)
T KOG0296|consen 198 FIPDGKRILTGY-DDGTIIVWNPK 220 (399)
T ss_pred ccCCCceEEEEe-cCceEEEEecC
Confidence 889998765544 57899999974
No 178
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.41 E-value=0.88 Score=48.22 Aligned_cols=153 Identities=13% Similarity=0.188 Sum_probs=94.7
Q ss_pred ceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCC-ceEEEeCCce
Q 016199 86 EDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYK-GLLKISGNST 164 (393)
Q Consensus 86 e~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~-gl~~id~~g~ 164 (393)
-+++|.|..-.+.++.++|.|..||-.-+. .+..|....|...|++|++.+ -|+|...+. .|-.++-+..
T Consensus 13 KglsFHP~rPwILtslHsG~IQlWDYRM~t---li~rFdeHdGpVRgv~FH~~q------plFVSGGDDykIkVWnYk~r 83 (1202)
T KOG0292|consen 13 KGLSFHPKRPWILTSLHSGVIQLWDYRMGT---LIDRFDEHDGPVRGVDFHPTQ------PLFVSGGDDYKIKVWNYKTR 83 (1202)
T ss_pred cceecCCCCCEEEEeecCceeeeehhhhhh---HHhhhhccCCccceeeecCCC------CeEEecCCccEEEEEecccc
Confidence 347889886667788889988888765433 255666666778999999999 799985433 2434443321
Q ss_pred EEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC-ccCCCcEEEc
Q 016199 165 VLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD-LYFANGVVLS 243 (393)
Q Consensus 165 ~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~-l~~~ngi~~s 243 (393)
+.+ ...-|. +.++..+.+... .=|+-.+|. ...|..++-.+++....+++ .++.=.-.|.
T Consensus 84 rcl-ftL~GH-lDYVRt~~FHhe-yPWIlSASD----------------DQTIrIWNwqsr~~iavltGHnHYVMcAqFh 144 (1202)
T KOG0292|consen 84 RCL-FTLLGH-LDYVRTVFFHHE-YPWILSASD----------------DQTIRIWNWQSRKCIAVLTGHNHYVMCAQFH 144 (1202)
T ss_pred eeh-hhhccc-cceeEEeeccCC-CceEEEccC----------------CCeEEEEeccCCceEEEEecCceEEEeeccC
Confidence 111 111111 122334444443 345554432 23566666666665554444 4555566677
Q ss_pred CCCCEEEEEeCCCCeEEEEEecCC
Q 016199 244 PDQTHLVYCETSMRRCRKFYIKGK 267 (393)
Q Consensus 244 ~dg~~l~v~~~~~~ri~~~~~~g~ 267 (393)
|-+ .++|+.+...+|..||+.|-
T Consensus 145 ptE-DlIVSaSLDQTVRVWDisGL 167 (1202)
T KOG0292|consen 145 PTE-DLIVSASLDQTVRVWDISGL 167 (1202)
T ss_pred Ccc-ceEEEecccceEEEEeecch
Confidence 766 47899999999999999874
No 179
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=96.38 E-value=0.2 Score=48.16 Aligned_cols=111 Identities=17% Similarity=0.182 Sum_probs=62.1
Q ss_pred ccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE--ecC-------------ccCCCcEEE
Q 016199 178 LTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL--VSD-------------LYFANGVVL 242 (393)
Q Consensus 178 ~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~--~~~-------------l~~~ngi~~ 242 (393)
-+.+|++.++|.+|+++..... ....-+|++|++++...+.+ ... ....-++++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~-----------~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~ 154 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRT-----------GGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAV 154 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccC-----------CCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEE
Confidence 4568999889999999733200 00125799999873332332 111 112347999
Q ss_pred cCCCCEEEEEeCCC---------------CeEEEEEecCCC--CcceeeeeccC-----CCCCCeEEECCCCCEEEEEe
Q 016199 243 SPDQTHLVYCETSM---------------RRCRKFYIKGKN--AGRVEKFIETL-----PGLPDNIRYDGEGHYLIALA 299 (393)
Q Consensus 243 s~dg~~l~v~~~~~---------------~ri~~~~~~g~~--~~~~~~~~~~l-----~g~P~~i~~d~~G~lwva~~ 299 (393)
++||+.||++.... -||++|+..... ..++..-.+.. ..-+..+..-++|+++|-.-
T Consensus 155 ~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER 233 (326)
T PF13449_consen 155 SPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLER 233 (326)
T ss_pred CCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEc
Confidence 99999777665332 478888875321 22222112210 11233466667888887544
No 180
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=96.35 E-value=0.14 Score=50.52 Aligned_cols=179 Identities=9% Similarity=0.099 Sum_probs=95.0
Q ss_pred EEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCce--eeeEECCCCCCCCceEEEEEeC-CCceEEEeCCce
Q 016199 88 LLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRP--LGIAFANSDPDADRITMIVADA-YKGLLKISGNST 164 (393)
Q Consensus 88 ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p--~gl~~d~~G~~~~~~~L~v~~~-~~gl~~id~~g~ 164 (393)
+-..+||+.|.+|.....+-.||+...+- . ++.- .+...| ..++..+|- ++.++-. .+.|..+|...
T Consensus 471 ckL~pdgrtLivGGeastlsiWDLAapTp-r-ikae-ltssapaCyALa~spDa------kvcFsccsdGnI~vwDLhn- 540 (705)
T KOG0639|consen 471 CKLLPDGRTLIVGGEASTLSIWDLAAPTP-R-IKAE-LTSSAPACYALAISPDA------KVCFSCCSDGNIAVWDLHN- 540 (705)
T ss_pred eEecCCCceEEeccccceeeeeeccCCCc-c-hhhh-cCCcchhhhhhhcCCcc------ceeeeeccCCcEEEEEccc-
Confidence 33456777777766655566666654320 0 1100 112223 567777877 6655433 45577778754
Q ss_pred EEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCc-cCCCcEEE
Q 016199 165 VLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDL-YFANGVVL 242 (393)
Q Consensus 165 ~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l-~~~ngi~~ 242 (393)
+.++..++|.. ..+..|++.+|| +||-+ .....|.++|..+++.- ...++ ...-.+..
T Consensus 541 q~~VrqfqGht-DGascIdis~dGtklWTG------------------GlDntvRcWDlregrql-qqhdF~SQIfSLg~ 600 (705)
T KOG0639|consen 541 QTLVRQFQGHT-DGASCIDISKDGTKLWTG------------------GLDNTVRCWDLREGRQL-QQHDFSSQIFSLGY 600 (705)
T ss_pred ceeeecccCCC-CCceeEEecCCCceeecC------------------CCccceeehhhhhhhhh-hhhhhhhhheeccc
Confidence 12222334432 224468899999 78876 34557888998655321 11111 11223345
Q ss_pred cCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecC
Q 016199 243 SPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATE 301 (393)
Q Consensus 243 s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~ 301 (393)
+|.++++.|.-. ++.+......++. ++.... ....--.+.+..-|++||++.-.
T Consensus 601 cP~~dWlavGMe-ns~vevlh~skp~--kyqlhl--heScVLSlKFa~cGkwfvStGkD 654 (705)
T KOG0639|consen 601 CPTGDWLAVGME-NSNVEVLHTSKPE--KYQLHL--HESCVLSLKFAYCGKWFVSTGKD 654 (705)
T ss_pred CCCccceeeecc-cCcEEEEecCCcc--ceeecc--cccEEEEEEecccCceeeecCch
Confidence 688888776543 5566666654432 111111 01112235678889999987643
No 181
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=96.32 E-value=0.11 Score=49.16 Aligned_cols=180 Identities=19% Similarity=0.226 Sum_probs=91.8
Q ss_pred CCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc-e-EEEeec
Q 016199 93 HSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS-T-VLLTDE 170 (393)
Q Consensus 93 ~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g-~-~~l~~~ 170 (393)
+.+.+..|+.|..|..|+.+++. -+..+.+.+...+++.|. +| .+.-+.-+..+...+... . ..+...
T Consensus 246 d~rviisGSSDsTvrvWDv~tge---~l~tlihHceaVLhlrf~-ng------~mvtcSkDrsiaVWdm~sps~it~rrV 315 (499)
T KOG0281|consen 246 DERVIVSGSSDSTVRVWDVNTGE---PLNTLIHHCEAVLHLRFS-NG------YMVTCSKDRSIAVWDMASPTDITLRRV 315 (499)
T ss_pred cceEEEecCCCceEEEEeccCCc---hhhHHhhhcceeEEEEEe-CC------EEEEecCCceeEEEeccCchHHHHHHH
Confidence 33344445555556666655443 123333445667788885 56 455554455555555443 0 001011
Q ss_pred cCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEE
Q 016199 171 AEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLV 250 (393)
Q Consensus 171 ~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~ 250 (393)
.-|. ...+|-+.+|.. |+..++. .-.+-.++..|.+...... .+-.|||...=...++
T Consensus 316 LvGH-rAaVNvVdfd~k---yIVsASg----------------DRTikvW~~st~efvRtl~--gHkRGIAClQYr~rlv 373 (499)
T KOG0281|consen 316 LVGH-RAAVNVVDFDDK---YIVSASG----------------DRTIKVWSTSTCEFVRTLN--GHKRGIACLQYRDRLV 373 (499)
T ss_pred Hhhh-hhheeeeccccc---eEEEecC----------------CceEEEEeccceeeehhhh--cccccceehhccCeEE
Confidence 1122 134555555543 4443332 2356677777766543322 2446777655444788
Q ss_pred EEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCcchhhhh
Q 016199 251 YCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDL 308 (393)
Q Consensus 251 v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~ 308 (393)
|+++..+.|..|++.-. ......++...+-..|++|. -++--+...+....||+
T Consensus 374 VSGSSDntIRlwdi~~G---~cLRvLeGHEeLvRciRFd~-krIVSGaYDGkikvWdl 427 (499)
T KOG0281|consen 374 VSGSSDNTIRLWDIECG---ACLRVLEGHEELVRCIRFDN-KRIVSGAYDGKIKVWDL 427 (499)
T ss_pred EecCCCceEEEEecccc---HHHHHHhchHHhhhheeecC-ceeeeccccceEEEEec
Confidence 99999999999998532 21112222222445667763 33444444444444444
No 182
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.31 E-value=0.13 Score=54.64 Aligned_cols=162 Identities=13% Similarity=0.152 Sum_probs=94.2
Q ss_pred CccCCCceEEEecCCC-EEEEEe-cCCeEEEEEcCCCCCcceeeeeecCCCc-eeeeEECCCCCCCCceEEEEEeCCCce
Q 016199 80 GVLKGPEDLLYDAHSK-LIYTGC-EDGWIKRVTLNDSPADSLVHNWINTGGR-PLGIAFANSDPDADRITMIVADAYKGL 156 (393)
Q Consensus 80 g~~~~Pe~ia~d~~g~-~L~~~~-~~g~I~~~~~~~~~~~~~~~~~~~~~~~-p~gl~~d~~G~~~~~~~L~v~~~~~gl 156 (393)
|....|..+......+ +|+..- ....|+++|++.+. .++.|...... ...++-+.++.....+.-++|-...+|
T Consensus 478 g~~~~P~k~mL~~~d~~mil~~~~~~~~ly~mDLe~GK---VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~l 554 (794)
T PF08553_consen 478 GKNFTPKKAMLHDQDRNMILLDPNNPNKLYKMDLERGK---VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSL 554 (794)
T ss_pred CcccCcchhhhhccccceEeecCCCCCceEEEecCCCc---EEEEeecCCCcceeEecccccccccCCCceEEEECCCce
Confidence 3445577755554444 344332 35689999998765 36666543222 233333322110112367888888999
Q ss_pred EEEeCC--ceEEEeec-cCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC
Q 016199 157 LKISGN--STVLLTDE-AEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD 233 (393)
Q Consensus 157 ~~id~~--g~~~l~~~-~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~ 233 (393)
+++|+. |.+++... .+-.....-..++.+.+|.|-+++ ..|.|.-||.-+.+..+...+
T Consensus 555 friDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs------------------~~G~IRLyd~~g~~AKT~lp~ 616 (794)
T PF08553_consen 555 FRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGS------------------NKGDIRLYDRLGKRAKTALPG 616 (794)
T ss_pred EEeccCCCCCceeeccccccccCCCceEEEecCCceEEEEe------------------CCCcEEeecccchhhhhcCCC
Confidence 999974 31111111 110111123467888899999984 567788888765566666666
Q ss_pred ccCC-CcEEEcCCCCEEEEEeCCCCeEEEEEe
Q 016199 234 LYFA-NGVVLSPDQTHLVYCETSMRRCRKFYI 264 (393)
Q Consensus 234 l~~~-ngi~~s~dg~~l~v~~~~~~ri~~~~~ 264 (393)
+.-| .||.++.||++++.+ ...-|..++.
T Consensus 617 lG~pI~~iDvt~DGkwilaT--c~tyLlLi~t 646 (794)
T PF08553_consen 617 LGDPIIGIDVTADGKWILAT--CKTYLLLIDT 646 (794)
T ss_pred CCCCeeEEEecCCCcEEEEe--ecceEEEEEE
Confidence 6554 799999999876554 3455666654
No 183
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=96.30 E-value=0.94 Score=42.16 Aligned_cols=165 Identities=13% Similarity=0.184 Sum_probs=90.6
Q ss_pred EEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeee---cCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc-
Q 016199 88 LLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWI---NTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS- 163 (393)
Q Consensus 88 ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~---~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g- 163 (393)
+.|+|+|..+-.|..|..|+.|+..+. .+.+. ...+...++.+.+++ ..++-+..+..+..+|...
T Consensus 53 ~~F~P~gs~~aSgG~Dr~I~LWnv~gd-----ceN~~~lkgHsgAVM~l~~~~d~-----s~i~S~gtDk~v~~wD~~tG 122 (338)
T KOG0265|consen 53 IKFHPDGSCFASGGSDRAIVLWNVYGD-----CENFWVLKGHSGAVMELHGMRDG-----SHILSCGTDKTVRGWDAETG 122 (338)
T ss_pred EEECCCCCeEeecCCcceEEEEecccc-----ccceeeeccccceeEeeeeccCC-----CEEEEecCCceEEEEecccc
Confidence 679999986666677889999987654 22222 123456788888888 2466666677788888653
Q ss_pred eEEEeeccCCccccccccEEEc-----------CCCcEEEEeCCCccchhhh--------------eehhcccCCCcEEE
Q 016199 164 TVLLTDEAEGQKFKLTDGVDVA-----------DDGMIYFTDASNKYYLREY--------------ILDIFEGKPNGRLL 218 (393)
Q Consensus 164 ~~~l~~~~~g~~~~~~~~l~~d-----------~dG~l~~td~~~~~~~~~~--------------~~~~~e~~~~g~l~ 218 (393)
..... ..+. ..++|.+... .||++=+=|..++-..+-+ .-++..+.=.+.|-
T Consensus 123 ~~~rk--~k~h-~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ik 199 (338)
T KOG0265|consen 123 KRIRK--HKGH-TSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIK 199 (338)
T ss_pred eeeeh--hccc-cceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCcee
Confidence 11110 0000 1223333222 2444444443322111111 00111111123355
Q ss_pred EEeCCCCeEEEEecC-ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecC
Q 016199 219 SFDPVTKETKVLVSD-LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKG 266 (393)
Q Consensus 219 ~~d~~t~~~~~~~~~-l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g 266 (393)
.+|+..+.......+ -....++.++++|.++ .++...+.+.++++..
T Consensus 200 vWd~r~~d~~~~lsGh~DtIt~lsls~~gs~l-lsnsMd~tvrvwd~rp 247 (338)
T KOG0265|consen 200 VWDLRKNDGLYTLSGHADTITGLSLSRYGSFL-LSNSMDNTVRVWDVRP 247 (338)
T ss_pred eeccccCcceEEeecccCceeeEEeccCCCcc-ccccccceEEEEEecc
Confidence 677755554444444 3456889999999755 6778888999998764
No 184
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=96.29 E-value=0.29 Score=50.46 Aligned_cols=153 Identities=10% Similarity=0.144 Sum_probs=89.1
Q ss_pred CceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecC-CCceeeeEECCCCCCCCceEEEEEeC-CCceEEEeCC
Q 016199 85 PEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINT-GGRPLGIAFANSDPDADRITMIVADA-YKGLLKISGN 162 (393)
Q Consensus 85 Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~-~~~p~gl~~d~~G~~~~~~~L~v~~~-~~gl~~id~~ 162 (393)
-.++++++|+++|++..+..-+..|....+. .+..+... .+....|++++.| .|..... .+.+-.+|-.
T Consensus 65 ita~~l~~d~~~L~~a~rs~llrv~~L~tgk---~irswKa~He~Pvi~ma~~~~g------~LlAtggaD~~v~VWdi~ 135 (775)
T KOG0319|consen 65 ITALALTPDEEVLVTASRSQLLRVWSLPTGK---LIRSWKAIHEAPVITMAFDPTG------TLLATGGADGRVKVWDIK 135 (775)
T ss_pred hheeeecCCccEEEEeeccceEEEEEcccch---HhHhHhhccCCCeEEEEEcCCC------ceEEeccccceEEEEEee
Confidence 3457899999999988888767777777653 23333332 2334789999988 6655433 3335555654
Q ss_pred c-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeE--EEEecCccCCCc
Q 016199 163 S-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKET--KVLVSDLYFANG 239 (393)
Q Consensus 163 g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~--~~~~~~l~~~ng 239 (393)
+ .-. ..+.|.+ .-+..+.+.++-+.|+- ..+...+.+..||..++.. ..+........+
T Consensus 136 ~~~~t--h~fkG~g-GvVssl~F~~~~~~~lL---------------~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vts 197 (775)
T KOG0319|consen 136 NGYCT--HSFKGHG-GVVSSLLFHPHWNRWLL---------------ASGATDGTVRVWNLNDKRTCLHTMILHKSAVTS 197 (775)
T ss_pred CCEEE--EEecCCC-ceEEEEEeCCccchhhe---------------eecCCCceEEEEEcccCchHHHHHHhhhhheee
Confidence 4 111 1222322 12446667765433221 1124567788888765544 112233556789
Q ss_pred EEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199 240 VVLSPDQTHLVYCETSMRRCRKFYIK 265 (393)
Q Consensus 240 i~~s~dg~~l~v~~~~~~ri~~~~~~ 265 (393)
+++++|+..++-..+ ..-+..|++.
T Consensus 198 L~~~~d~~~~ls~~R-Dkvi~vwd~~ 222 (775)
T KOG0319|consen 198 LAFSEDSLELLSVGR-DKVIIVWDLV 222 (775)
T ss_pred eeeccCCceEEEecc-CcEEEEeehh
Confidence 999999876654433 4556777774
No 185
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.25 E-value=0.21 Score=47.67 Aligned_cols=147 Identities=17% Similarity=0.166 Sum_probs=82.5
Q ss_pred CcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCe---------
Q 016199 188 GMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRR--------- 258 (393)
Q Consensus 188 G~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~r--------- 258 (393)
.++|+-|.... ...++++.+|.+++++.=..+.-..++ +.+++|++.+|++++.-.|
T Consensus 3 ~rvyV~D~~~~-------------~~~~rv~viD~d~~k~lGmi~~g~~~~-~~~spdgk~~y~a~T~~sR~~rG~RtDv 68 (342)
T PF06433_consen 3 HRVYVQDPVFF-------------HMTSRVYVIDADSGKLLGMIDTGFLGN-VALSPDGKTIYVAETFYSRGTRGERTDV 68 (342)
T ss_dssp TEEEEEE-GGG-------------GSSEEEEEEETTTTEEEEEEEEESSEE-EEE-TTSSEEEEEEEEEEETTEEEEEEE
T ss_pred cEEEEECCccc-------------cccceEEEEECCCCcEEEEeecccCCc-eeECCCCCEEEEEEEEEeccccccceeE
Confidence 46888875431 124699999999888654444334444 7799999999999876333
Q ss_pred EEEEEecCCCCcceeeeeccC-----CCCCCeEEECCCCC-EEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCC
Q 016199 259 CRKFYIKGKNAGRVEKFIETL-----PGLPDNIRYDGEGH-YLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMG 332 (393)
Q Consensus 259 i~~~~~~g~~~~~~~~~~~~l-----~g~P~~i~~d~~G~-lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 332 (393)
|..||.+.-. -..|+.+... -..+..+++..||+ ++|....+
T Consensus 69 v~~~D~~TL~-~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TP------------------------------- 116 (342)
T PF06433_consen 69 VEIWDTQTLS-PTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTP------------------------------- 116 (342)
T ss_dssp EEEEETTTTE-EEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESS-------------------------------
T ss_pred EEEEecCcCc-ccceEecCCcchheecccccceEEccCCcEEEEEccCC-------------------------------
Confidence 4456653211 1122222111 01456788888998 55555433
Q ss_pred CCCceEEEECCC-CcEEEEeeCCCCCccEEEEEeC-CEEEEEecCCCeEEEEeCCC
Q 016199 333 KSSSGVFIVDLD-GKPIAHYYDPEMSLISSAIKIG-DHLYCGSVHHRGILHLDVNQ 386 (393)
Q Consensus 333 ~~~~~v~~~d~~-g~~~~~~~d~~~~~~~~~~~~~-g~Lyigs~~~~~i~~~~~~~ 386 (393)
...|-.+|.+ ++++..+..| .|..+.+.+ +.++.- .....+..+.+++
T Consensus 117 --a~SVtVVDl~~~kvv~ei~~P---GC~~iyP~~~~~F~~l-C~DGsl~~v~Ld~ 166 (342)
T PF06433_consen 117 --ATSVTVVDLAAKKVVGEIDTP---GCWLIYPSGNRGFSML-CGDGSLLTVTLDA 166 (342)
T ss_dssp --SEEEEEEETTTTEEEEEEEGT---SEEEEEEEETTEEEEE-ETTSCEEEEEETS
T ss_pred --CCeEEEEECCCCceeeeecCC---CEEEEEecCCCceEEE-ecCCceEEEEECC
Confidence 2458888875 5566666644 444555544 443333 2555666666553
No 186
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.18 E-value=2 Score=44.80 Aligned_cols=158 Identities=11% Similarity=0.090 Sum_probs=87.0
Q ss_pred cEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCeE
Q 016199 181 GVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRC 259 (393)
Q Consensus 181 ~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri 259 (393)
.-.+++|| .||+....... .-+......+.++..+.++++... .--..+..+.+++||..+.+.- .++|
T Consensus 401 ~PsWspDG~~lw~v~dg~~~------~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~--~g~v 470 (591)
T PRK13616 401 RPSWSLDADAVWVVVDGNTV------VRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII--GGKV 470 (591)
T ss_pred CceECCCCCceEEEecCcce------EEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE--CCEE
Confidence 34688985 78887422110 001111234567766666555433 1112477899999999887765 3577
Q ss_pred EEEEecCCCCcceee-----eeccCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCC
Q 016199 260 RKFYIKGKNAGRVEK-----FIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKS 334 (393)
Q Consensus 260 ~~~~~~g~~~~~~~~-----~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 334 (393)
+.--+.....|..+. +...+...+..+..-.++.+.++.....
T Consensus 471 ~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~-------------------------------- 518 (591)
T PRK13616 471 YLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPE-------------------------------- 518 (591)
T ss_pred EEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCC--------------------------------
Confidence 763332111222221 2222333345566777788777654321
Q ss_pred CceEEEECCCCcEEEEeeCCC-CCccEEEEEeCCEEEEEecCCCeEEEEe
Q 016199 335 SSGVFIVDLDGKPIAHYYDPE-MSLISSAIKIGDHLYCGSVHHRGILHLD 383 (393)
Q Consensus 335 ~~~v~~~d~~g~~~~~~~d~~-~~~~~~~~~~~g~Lyigs~~~~~i~~~~ 383 (393)
..+.+++.+|.....+.... ...+..+....+.+|++ .++.+.++.
T Consensus 519 -~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~~iyv~--~~~g~~~l~ 565 (591)
T PRK13616 519 -HPVWYVNLDGSNSDALPSRNLSAPVVAVAASPSTVYVT--DARAVLQLP 565 (591)
T ss_pred -CceEEEecCCccccccCCCCccCceEEEecCCceEEEE--cCCceEEec
Confidence 23788888887655433322 33344444455789998 677777776
No 187
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=96.06 E-value=0.76 Score=46.54 Aligned_cols=128 Identities=13% Similarity=0.192 Sum_probs=76.4
Q ss_pred CccccccccEEEcCC-CcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCC-------eEEEEec--------C---
Q 016199 173 GQKFKLTDGVDVADD-GMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTK-------ETKVLVS--------D--- 233 (393)
Q Consensus 173 g~~~~~~~~l~~d~d-G~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~-------~~~~~~~--------~--- 233 (393)
..++..+.+|++.+. |.+|++....+.. .+-.-.--+....|.|+||-+.++ ++..+.. .
T Consensus 413 AT~mdRpE~i~~~p~~g~Vy~~lTNn~~r-~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~ 491 (616)
T COG3211 413 ATPMDRPEWIAVNPGTGEVYFTLTNNGKR-SDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGAS 491 (616)
T ss_pred CccccCccceeecCCcceEEEEeCCCCcc-ccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccc
Confidence 345566788999884 6899985532211 000000111234688999988765 4444321 1
Q ss_pred -------ccCCCcEEEcCCCCEEEEEeCCCC--------eEEEEEecCCCCcceeeeeccCCC-CCCeEEECCCCC-EEE
Q 016199 234 -------LYFANGVVLSPDQTHLVYCETSMR--------RCRKFYIKGKNAGRVEKFIETLPG-LPDNIRYDGEGH-YLI 296 (393)
Q Consensus 234 -------l~~~ngi~~s~dg~~l~v~~~~~~--------ri~~~~~~g~~~~~~~~~~~~l~g-~P~~i~~d~~G~-lwv 296 (393)
+..|.+++|++.|+ ||+++-..+ .+..+...+.+.++.+.|.....+ --.|.++.+||+ ++|
T Consensus 492 ~~~~~~~f~~PDnl~fD~~Gr-LWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV 570 (616)
T COG3211 492 ANINANWFNSPDNLAFDPWGR-LWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFV 570 (616)
T ss_pred cCcccccccCCCceEECCCCC-EEEEecCCCCccCcccccccccccCCCccceeeeeccCCCcceeecceeCCCCceEEE
Confidence 33489999999995 777764432 333333445567777777643221 135688999987 888
Q ss_pred EEecCc
Q 016199 297 ALATEF 302 (393)
Q Consensus 297 a~~~~r 302 (393)
+...+.
T Consensus 571 ~vQHPG 576 (616)
T COG3211 571 NVQHPG 576 (616)
T ss_pred EecCCC
Confidence 887664
No 188
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.98 E-value=0.22 Score=47.95 Aligned_cols=184 Identities=13% Similarity=0.131 Sum_probs=98.4
Q ss_pred ceEEEecCCCEEEEEecCCeEEEEE-cCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCC-c
Q 016199 86 EDLLYDAHSKLIYTGCEDGWIKRVT-LNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGN-S 163 (393)
Q Consensus 86 e~ia~d~~g~~L~~~~~~g~I~~~~-~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~-g 163 (393)
-.+++..+|..|=++..||.+..|+ |.-.. ........+....|.|.+|| ++++.-.......++.+ |
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t----~l~e~~~~~eV~DL~FS~dg------k~lasig~d~~~VW~~~~g 217 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT----ILEEIAHHAEVKDLDFSPDG------KFLASIGADSARVWSVNTG 217 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchh----hhhhHhhcCccccceeCCCC------cEEEEecCCceEEEEeccC
Confidence 4588888888777888899888887 55433 22222334668899999999 77766555555566653 3
Q ss_pred --eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCC--C----eEEEEecCc
Q 016199 164 --TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVT--K----ETKVLVSDL 234 (393)
Q Consensus 164 --~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t--~----~~~~~~~~l 234 (393)
.....+.-....+..+.- -.|+++ .+++.... .+.+++..++... + +.+......
T Consensus 218 ~~~a~~t~~~k~~~~~~cRF-~~d~~~~~l~laa~~---------------~~~~~v~~~~~~~w~~~~~l~~~~~~~~~ 281 (398)
T KOG0771|consen 218 AALARKTPFSKDEMFSSCRF-SVDNAQETLRLAASQ---------------FPGGGVRLCDISLWSGSNFLRLRKKIKRF 281 (398)
T ss_pred chhhhcCCcccchhhhhcee-cccCCCceEEEEEec---------------CCCCceeEEEeeeeccccccchhhhhhcc
Confidence 222211111111222211 122222 66665422 2233444443321 1 112222234
Q ss_pred cCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEE
Q 016199 235 YFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIAL 298 (393)
Q Consensus 235 ~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~ 298 (393)
.....++++.||+++-+ .+..+.|..|+... ......+.+-..++-.++.+.++-++-...
T Consensus 282 ~siSsl~VS~dGkf~Al-GT~dGsVai~~~~~--lq~~~~vk~aH~~~VT~ltF~Pdsr~~~sv 342 (398)
T KOG0771|consen 282 KSISSLAVSDDGKFLAL-GTMDGSVAIYDAKS--LQRLQYVKEAHLGFVTGLTFSPDSRYLASV 342 (398)
T ss_pred CcceeEEEcCCCcEEEE-eccCCcEEEEEece--eeeeEeehhhheeeeeeEEEcCCcCccccc
Confidence 45678899999987655 55688899988642 111111111122345567777776655543
No 189
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.97 E-value=0.23 Score=50.55 Aligned_cols=186 Identities=14% Similarity=0.236 Sum_probs=93.0
Q ss_pred CCCEEEEEecCCeEEEEEcCCCCCcce---eeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc-----e
Q 016199 93 HSKLIYTGCEDGWIKRVTLNDSPADSL---VHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS-----T 164 (393)
Q Consensus 93 ~g~~L~~~~~~g~I~~~~~~~~~~~~~---~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g-----~ 164 (393)
+++.||+|.+||.|..|+.....+... ...+.....-.+.|+...+| +.|+-|..+.-|-.++... .
T Consensus 36 ~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~-----~tlIS~SsDtTVK~W~~~~~~~~c~ 110 (735)
T KOG0308|consen 36 NGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNG-----KTLISASSDTTVKVWNAHKDNTFCM 110 (735)
T ss_pred CCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCC-----CceEEecCCceEEEeecccCcchhH
Confidence 555699999999888887654321100 00011111223455555555 1344444444455554321 1
Q ss_pred EEEeeccCCccccccccEEE-cCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec-------Cc--
Q 016199 165 VLLTDEAEGQKFKLTDGVDV-ADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS-------DL-- 234 (393)
Q Consensus 165 ~~l~~~~~g~~~~~~~~l~~-d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~-------~l-- 234 (393)
..+. ..-..+..++. .++..+.++ + .-.++|+.||..++..+.+.. .+
T Consensus 111 stir-----~H~DYVkcla~~ak~~~lvaS-g----------------GLD~~IflWDin~~~~~l~~s~n~~t~~sl~s 168 (735)
T KOG0308|consen 111 STIR-----THKDYVKCLAYIAKNNELVAS-G----------------GLDRKIFLWDINTGTATLVASFNNVTVNSLGS 168 (735)
T ss_pred hhhh-----cccchheeeeecccCceeEEe-c----------------CCCccEEEEEccCcchhhhhhccccccccCCC
Confidence 1111 11123456666 455555544 2 224568888877663322211 11
Q ss_pred ---cCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEE---ECCCCCEEEEE-ecCcchhhh
Q 016199 235 ---YFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIR---YDGEGHYLIAL-ATEFSTYWD 307 (393)
Q Consensus 235 ---~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~---~d~~G~lwva~-~~~r~~~~~ 307 (393)
.....++..+.| +++++....+-|..|++... . ..+ .+-|+-+|+. ++.||+-.++. ..+-..+||
T Consensus 169 G~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~---~--kim-kLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWd 241 (735)
T KOG0308|consen 169 GPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTC---K--KIM-KLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWD 241 (735)
T ss_pred CCccceeeeecCCcc-eEEEecCcccceEEeccccc---c--cee-eeeccccceEEEEEcCCCCeEeecCCCceEEeee
Confidence 122345555555 78888877777777776432 1 122 2346667754 68888744443 333334555
Q ss_pred hhhcC
Q 016199 308 LAYRY 312 (393)
Q Consensus 308 ~~~~~ 312 (393)
+-+++
T Consensus 242 LgqQr 246 (735)
T KOG0308|consen 242 LGQQR 246 (735)
T ss_pred ccccc
Confidence 54443
No 190
>KOG4328 consensus WD40 protein [Function unknown]
Probab=95.92 E-value=1.1 Score=43.83 Aligned_cols=232 Identities=15% Similarity=0.133 Sum_probs=117.6
Q ss_pred eEEEecCC-CEEEEEecCCeEEEEEcCCCCCcceeeeeecCC---CceeeeEECC-CCCCCCceEEEEEeCCCceEEEeC
Q 016199 87 DLLYDAHS-KLIYTGCEDGWIKRVTLNDSPADSLVHNWINTG---GRPLGIAFAN-SDPDADRITMIVADAYKGLLKISG 161 (393)
Q Consensus 87 ~ia~d~~g-~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~---~~p~gl~~d~-~G~~~~~~~L~v~~~~~gl~~id~ 161 (393)
+|.|.|.+ ..+|..+.||.|...|.++.. .+.+.... ..-.++.+.. ++ .+++++..+-+..+|.
T Consensus 239 ~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i----~e~v~s~~~d~~~fs~~d~~~e~~------~vl~~~~~G~f~~iD~ 308 (498)
T KOG4328|consen 239 GLKFSPANTSQIYSSSYDGTIRLQDFEGNI----SEEVLSLDTDNIWFSSLDFSAESR------SVLFGDNVGNFNVIDL 308 (498)
T ss_pred ceEecCCChhheeeeccCceeeeeeecchh----hHHHhhcCccceeeeeccccCCCc------cEEEeecccceEEEEe
Confidence 46666643 357778888888777777654 33332221 1123344433 34 6777776664555554
Q ss_pred C--ceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCC--CeEEEEe---cCc
Q 016199 162 N--STVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVT--KETKVLV---SDL 234 (393)
Q Consensus 162 ~--g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t--~~~~~~~---~~l 234 (393)
. +.+...-.... .-+++|++.|-..-+++.++. .+.+-.||... ++.+.++ ..-
T Consensus 309 R~~~s~~~~~~lh~---kKI~sv~~NP~~p~~laT~s~----------------D~T~kIWD~R~l~~K~sp~lst~~Hr 369 (498)
T KOG4328|consen 309 RTDGSEYENLRLHK---KKITSVALNPVCPWFLATASL----------------DQTAKIWDLRQLRGKASPFLSTLPHR 369 (498)
T ss_pred ecCCccchhhhhhh---cccceeecCCCCchheeeccc----------------CcceeeeehhhhcCCCCcceeccccc
Confidence 2 21110000111 236688888866444554433 22344555421 2221122 223
Q ss_pred cCCCcEEEcCCCCEEEEEeCCCCeEEEEEec--CCCCcc-eeeeeccCCC---CCCeEEECCCCCEEEEEecCcchhhhh
Q 016199 235 YFANGVVLSPDQTHLVYCETSMRRCRKFYIK--GKNAGR-VEKFIETLPG---LPDNIRYDGEGHYLIALATEFSTYWDL 308 (393)
Q Consensus 235 ~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~--g~~~~~-~~~~~~~l~g---~P~~i~~d~~G~lwva~~~~r~~~~~~ 308 (393)
...|...|+|++.. +++.+..++|..|+-+ +.+... .++...+..+ -|---+.|++-++.+.....
T Consensus 370 rsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~------- 441 (498)
T KOG4328|consen 370 RSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYP------- 441 (498)
T ss_pred ceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccC-------
Confidence 34688899999877 6778889999999863 011000 0111000000 01112346665544433322
Q ss_pred hhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcE-EEEeeCCCCCccEEE---EEeCCEEEEEecCCCeEEEE
Q 016199 309 AYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKP-IAHYYDPEMSLISSA---IKIGDHLYCGSVHHRGILHL 382 (393)
Q Consensus 309 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~-~~~~~d~~~~~~~~~---~~~~g~Lyigs~~~~~i~~~ 382 (393)
..|-.||.+|+. +..+++|....++.+ .+.++.+.-|+.....|..+
T Consensus 442 ---------------------------r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vf 492 (498)
T KOG4328|consen 442 ---------------------------RPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVF 492 (498)
T ss_pred ---------------------------cceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEE
Confidence 237888988765 788899884333333 33444455555445555544
No 191
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=95.87 E-value=2.1 Score=42.26 Aligned_cols=150 Identities=13% Similarity=0.115 Sum_probs=88.3
Q ss_pred CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeC-CCceEEEeC
Q 016199 83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADA-YKGLLKISG 161 (393)
Q Consensus 83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~-~~gl~~id~ 161 (393)
+.-.+++|..+|..|-+|..+|.+..|+.++.. ...+....+....+....+| +.+++.. ++-+..+|.
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l----~~tl~~HkgPI~slKWnk~G------~yilS~~vD~ttilwd~ 305 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL----ISTLGQHKGPIFSLKWNKKG------TYILSGGVDGTTILWDA 305 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchh----hhhhhccCCceEEEEEcCCC------CEEEeccCCccEEEEec
Confidence 556779999999989999999999999988765 55555555667889999888 6555433 444666675
Q ss_pred -Cc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCc
Q 016199 162 -NS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANG 239 (393)
Q Consensus 162 -~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ng 239 (393)
.| ..+.. .....+ .-+|..-.+.. +++. +. .+.-.|++++.++- +..+...-...++
T Consensus 306 ~~g~~~q~f-~~~s~~---~lDVdW~~~~~-F~ts-~t--------------d~~i~V~kv~~~~P-~~t~~GH~g~V~a 364 (524)
T KOG0273|consen 306 HTGTVKQQF-EFHSAP---ALDVDWQSNDE-FATS-ST--------------DGCIHVCKVGEDRP-VKTFIGHHGEVNA 364 (524)
T ss_pred cCceEEEee-eeccCC---ccceEEecCce-Eeec-CC--------------CceEEEEEecCCCc-ceeeecccCceEE
Confidence 33 22211 111111 01332222222 2221 11 11224555655432 3333434456788
Q ss_pred EEEcCCCCEEEEEeCCCCeEEEEEe
Q 016199 240 VVLSPDQTHLVYCETSMRRCRKFYI 264 (393)
Q Consensus 240 i~~s~dg~~l~v~~~~~~ri~~~~~ 264 (393)
+.+.|.| .|+.+.+..+++-.|..
T Consensus 365 lk~n~tg-~LLaS~SdD~TlkiWs~ 388 (524)
T KOG0273|consen 365 LKWNPTG-SLLASCSDDGTLKIWSM 388 (524)
T ss_pred EEECCCC-ceEEEecCCCeeEeeec
Confidence 9999988 46677777777766664
No 192
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=95.85 E-value=0.27 Score=46.78 Aligned_cols=184 Identities=16% Similarity=0.195 Sum_probs=104.9
Q ss_pred CccCCCceEEEecCC-CEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEE
Q 016199 80 GVLKGPEDLLYDAHS-KLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLK 158 (393)
Q Consensus 80 g~~~~Pe~ia~d~~g-~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~ 158 (393)
|...|-.++|-+|+. ..+..|+.||.|..|++.... ....+....|-..||+++.+. .+++|+ +..|-.
T Consensus 64 gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~---~~~~f~AH~G~V~Gi~v~~~~------~~tvgd-DKtvK~ 133 (433)
T KOG0268|consen 64 GHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE---CIRTFKAHEGLVRGICVTQTS------FFTVGD-DKTVKQ 133 (433)
T ss_pred ccccccchhhcCcchhhhhhccccCceEEEEehhhhh---hhheeecccCceeeEEecccc------eEEecC-Ccceee
Confidence 334556667777764 356788889999999987643 134444445667899999855 677764 444444
Q ss_pred EeCCc--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCC-eEEEEecCcc
Q 016199 159 ISGNS--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTK-ETKVLVSDLY 235 (393)
Q Consensus 159 id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~-~~~~~~~~l~ 235 (393)
+..++ ...+ .+. ....||.-...++.+.|. ...+-.||..-. -++.+.-+..
T Consensus 134 wk~~~~p~~ti----lg~--s~~~gIdh~~~~~~FaTc-------------------Ge~i~IWD~~R~~Pv~smswG~D 188 (433)
T KOG0268|consen 134 WKIDGPPLHTI----LGK--SVYLGIDHHRKNSVFATC-------------------GEQIDIWDEQRDNPVSSMSWGAD 188 (433)
T ss_pred eeccCCcceee----ecc--cccccccccccccccccc-------------------CceeeecccccCCccceeecCCC
Confidence 43333 1111 111 012233333334454442 223555554311 1222333333
Q ss_pred CCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCc
Q 016199 236 FANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEF 302 (393)
Q Consensus 236 ~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r 302 (393)
....+.+.|-+..++.+....+.|..||+.... ....++ +.-.++.|+..+++..+++..+..
T Consensus 189 ti~svkfNpvETsILas~~sDrsIvLyD~R~~~--Pl~KVi--~~mRTN~IswnPeafnF~~a~ED~ 251 (433)
T KOG0268|consen 189 SISSVKFNPVETSILASCASDRSIVLYDLRQAS--PLKKVI--LTMRTNTICWNPEAFNFVAANEDH 251 (433)
T ss_pred ceeEEecCCCcchheeeeccCCceEEEecccCC--ccceee--eeccccceecCccccceeeccccc
Confidence 445677777777788888788999999985321 122222 223578899999887777766553
No 193
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=95.84 E-value=2.1 Score=42.07 Aligned_cols=149 Identities=16% Similarity=0.129 Sum_probs=89.6
Q ss_pred ceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc--
Q 016199 86 EDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS-- 163 (393)
Q Consensus 86 e~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g-- 163 (393)
-++|+++||+.|.+|..+..|..|+.++.. .++.+....+...+++|-..- .+||.+.+.+++-.++.+-
T Consensus 206 l~~avS~Dgkylatgg~d~~v~Iw~~~t~e---hv~~~~ghr~~V~~L~fr~gt-----~~lys~s~Drsvkvw~~~~~s 277 (479)
T KOG0299|consen 206 LTLAVSSDGKYLATGGRDRHVQIWDCDTLE---HVKVFKGHRGAVSSLAFRKGT-----SELYSASADRSVKVWSIDQLS 277 (479)
T ss_pred EEEEEcCCCcEEEecCCCceEEEecCcccc---hhhcccccccceeeeeeecCc-----cceeeeecCCceEEEehhHhH
Confidence 358999999977777778888899988754 144444455667888885422 2799998888877776543
Q ss_pred -eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE-EecCccCCCcEE
Q 016199 164 -TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV-LVSDLYFANGVV 241 (393)
Q Consensus 164 -~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~-~~~~l~~~ngi~ 241 (393)
.+.+.....+ +.+|..-..++.. |.. +...+-+||++ |+ +.+. +..+-.++..++
T Consensus 278 ~vetlyGHqd~-----v~~IdaL~reR~v-tVG--------------grDrT~rlwKi-~e--esqlifrg~~~sidcv~ 334 (479)
T KOG0299|consen 278 YVETLYGHQDG-----VLGIDALSRERCV-TVG--------------GRDRTVRLWKI-PE--ESQLIFRGGEGSIDCVA 334 (479)
T ss_pred HHHHHhCCccc-----eeeechhcccceE-Eec--------------cccceeEEEec-cc--cceeeeeCCCCCeeeEE
Confidence 2222111111 2233333334332 211 11345577777 33 2222 233345788888
Q ss_pred EcCCCCEEEEEeCCCCeEEEEEecCC
Q 016199 242 LSPDQTHLVYCETSMRRCRKFYIKGK 267 (393)
Q Consensus 242 ~s~dg~~l~v~~~~~~ri~~~~~~g~ 267 (393)
+-.|. =|++.+.++.|..+.+..+
T Consensus 335 ~In~~--HfvsGSdnG~IaLWs~~KK 358 (479)
T KOG0299|consen 335 FINDE--HFVSGSDNGSIALWSLLKK 358 (479)
T ss_pred Eeccc--ceeeccCCceEEEeeeccc
Confidence 87665 3578888999999987543
No 194
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=95.81 E-value=0.58 Score=46.34 Aligned_cols=102 Identities=9% Similarity=0.078 Sum_probs=62.5
Q ss_pred EEEEEeCCCc-eEEEeCCc-eEEEe-eccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEe
Q 016199 146 TMIVADAYKG-LLKISGNS-TVLLT-DEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFD 221 (393)
Q Consensus 146 ~L~v~~~~~g-l~~id~~g-~~~l~-~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d 221 (393)
.|+....+.| +..+|.+| ...+. ..... .-+.+|++.|.+ .|+++- ....+|+.||
T Consensus 178 ~lL~~asd~G~VtlwDv~g~sp~~~~~~~Hs---AP~~gicfspsne~l~vsV-----------------G~Dkki~~yD 237 (673)
T KOG4378|consen 178 FLLSIASDKGAVTLWDVQGMSPIFHASEAHS---APCRGICFSPSNEALLVSV-----------------GYDKKINIYD 237 (673)
T ss_pred eeeEeeccCCeEEEEeccCCCcccchhhhcc---CCcCcceecCCccceEEEe-----------------cccceEEEee
Confidence 3444445666 45668887 22221 11111 224589999977 455553 2235799999
Q ss_pred CCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCC
Q 016199 222 PVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKN 268 (393)
Q Consensus 222 ~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~ 268 (393)
...++..--+..-..-..++|.++| ..+++.+.+++|+.||+.+.+
T Consensus 238 ~~s~~s~~~l~y~~Plstvaf~~~G-~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 238 IRSQASTDRLTYSHPLSTVAFSECG-TYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred cccccccceeeecCCcceeeecCCc-eEEEeecCCceEEEEecccCC
Confidence 7654432211111223578999999 677888899999999998643
No 195
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=95.81 E-value=1.2 Score=46.22 Aligned_cols=103 Identities=16% Similarity=0.206 Sum_probs=61.4
Q ss_pred CCCce-EEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeC
Q 016199 83 KGPED-LLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISG 161 (393)
Q Consensus 83 ~~Pe~-ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~ 161 (393)
.+|-- +++++.|..|-+|..++++..||...+. ....+...++-...+.|.++- .|+-|+.+..+.-+..+|.
T Consensus 105 e~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~---~th~fkG~gGvVssl~F~~~~---~~~lL~sg~~D~~v~vwnl 178 (775)
T KOG0319|consen 105 EAPVITMAFDPTGTLLATGGADGRVKVWDIKNGY---CTHSFKGHGGVVSSLLFHPHW---NRWLLASGATDGTVRVWNL 178 (775)
T ss_pred CCCeEEEEEcCCCceEEeccccceEEEEEeeCCE---EEEEecCCCceEEEEEeCCcc---chhheeecCCCceEEEEEc
Confidence 34433 7899998766677789999999988664 233444445667888998764 2223455544445666776
Q ss_pred Cc-eEEEeeccCCccccccccEEEcCCCcEEEE
Q 016199 162 NS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFT 193 (393)
Q Consensus 162 ~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~t 193 (393)
.. .+.+. ... .....+.++++.+|+.-.++
T Consensus 179 ~~~~tcl~-~~~-~H~S~vtsL~~~~d~~~~ls 209 (775)
T KOG0319|consen 179 NDKRTCLH-TMI-LHKSAVTSLAFSEDSLELLS 209 (775)
T ss_pred ccCchHHH-HHH-hhhhheeeeeeccCCceEEE
Confidence 53 21111 111 12345668888888854444
No 196
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=95.77 E-value=2.9 Score=44.09 Aligned_cols=146 Identities=12% Similarity=0.057 Sum_probs=80.4
Q ss_pred CceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhhee
Q 016199 128 GRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYIL 206 (393)
Q Consensus 128 ~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~ 206 (393)
....+++.+.-| +..++|.+.+-|-+++.+. ...-........-..+.+++.|.-+++.++.
T Consensus 449 ~~~~av~vs~CG-----NF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa------------ 511 (910)
T KOG1539|consen 449 INATAVCVSFCG-----NFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSA------------ 511 (910)
T ss_pred cceEEEEEeccC-----ceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEc------------
Confidence 456788888888 2346665555688888764 3221110000111335689999988888874
Q ss_pred hhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeE
Q 016199 207 DIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNI 286 (393)
Q Consensus 207 ~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i 286 (393)
...|-+..||.+++.+..-.+--..+.++..+... .++......-.|..||....+ -.+.|. +....-+.+
T Consensus 512 -----~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s-~l~a~~~ddf~I~vvD~~t~k--vvR~f~-gh~nritd~ 582 (910)
T KOG1539|consen 512 -----GADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVS-DLLAIALDDFSIRVVDVVTRK--VVREFW-GHGNRITDM 582 (910)
T ss_pred -----cCcceEEEEecCCcceeeeeccCCCcceeeeeehh-hhhhhhcCceeEEEEEchhhh--hhHHhh-ccccceeee
Confidence 33455555676654422212222334555554443 345555566778888864321 112232 222344568
Q ss_pred EECCCCCEEEEEe
Q 016199 287 RYDGEGHYLIALA 299 (393)
Q Consensus 287 ~~d~~G~lwva~~ 299 (393)
++++||++.+...
T Consensus 583 ~FS~DgrWlisas 595 (910)
T KOG1539|consen 583 TFSPDGRWLISAS 595 (910)
T ss_pred EeCCCCcEEEEee
Confidence 8999999555443
No 197
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=95.77 E-value=1.3 Score=41.38 Aligned_cols=145 Identities=14% Similarity=0.154 Sum_probs=84.8
Q ss_pred ceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc--
Q 016199 86 EDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS-- 163 (393)
Q Consensus 86 e~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g-- 163 (393)
.++-|++.++.|.+++.||.+..|+..... ...........+.-+|..+- .+|+++.++.|.++|.++
T Consensus 17 S~v~f~~~~~~LLvssWDgslrlYdv~~~~----l~~~~~~~~plL~c~F~d~~------~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 17 SSVKFSPSSSDLLVSSWDGSLRLYDVPANS----LKLKFKHGAPLLDCAFADES------TIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred eeEEEcCcCCcEEEEeccCcEEEEeccchh----hhhheecCCceeeeeccCCc------eEEEeccCceEEEEEecCCc
Confidence 447788888889999999988888876543 22222223445778887777 899998888899999876
Q ss_pred eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCC-cEEE
Q 016199 164 TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFAN-GVVL 242 (393)
Q Consensus 164 ~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~n-gi~~ 242 (393)
...+....++ +..|.....-...++- +..+.+-.+|+...... ..+..++ -.+.
T Consensus 87 ~~~igth~~~-----i~ci~~~~~~~~vIsg-----------------sWD~~ik~wD~R~~~~~---~~~d~~kkVy~~ 141 (323)
T KOG1036|consen 87 EDQIGTHDEG-----IRCIEYSYEVGCVISG-----------------SWDKTIKFWDPRNKVVV---GTFDQGKKVYCM 141 (323)
T ss_pred ceeeccCCCc-----eEEEEeeccCCeEEEc-----------------ccCccEEEEeccccccc---cccccCceEEEE
Confidence 2233222222 1233333322333431 44567778888642211 1111111 2234
Q ss_pred cCCCCEEEEEeCCCCeEEEEEecC
Q 016199 243 SPDQTHLVYCETSMRRCRKFYIKG 266 (393)
Q Consensus 243 s~dg~~l~v~~~~~~ri~~~~~~g 266 (393)
+-.|+.|+| .+....+..||+..
T Consensus 142 ~v~g~~LvV-g~~~r~v~iyDLRn 164 (323)
T KOG1036|consen 142 DVSGNRLVV-GTSDRKVLIYDLRN 164 (323)
T ss_pred eccCCEEEE-eecCceEEEEEccc
Confidence 444555655 44567899999863
No 198
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=95.74 E-value=2.9 Score=43.00 Aligned_cols=150 Identities=11% Similarity=0.094 Sum_probs=94.0
Q ss_pred CceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeee--cCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCC
Q 016199 85 PEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWI--NTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGN 162 (393)
Q Consensus 85 Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~--~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~ 162 (393)
-.++|+..+.+.|-++=.+|.|-.|++...- ..+.+. +...+..+|++.+.| +|+-....+-|..+|+.
T Consensus 28 I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w---~~~~vi~g~~drsIE~L~W~e~~------RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 28 IVSLAYSHKSNQLAVSRTDGNIEIWNLSNNW---FLEPVIHGPEDRSIESLAWAEGG------RLFSSGLSGSITEWDLH 98 (691)
T ss_pred eEEEEEeccCCceeeeccCCcEEEEccCCCc---eeeEEEecCCCCceeeEEEccCC------eEEeecCCceEEEEecc
Confidence 3458888877767666668888888876532 011121 234567899999888 99988766778889876
Q ss_pred c-eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE---ecCccCC
Q 016199 163 S-TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL---VSDLYFA 237 (393)
Q Consensus 163 g-~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~---~~~l~~~ 237 (393)
. .+.......+ ..+..+++.+.+ .+-++. ..|-++.++-..++++.. ...-...
T Consensus 99 ~lk~~~~~d~~g---g~IWsiai~p~~~~l~Igc------------------ddGvl~~~s~~p~~I~~~r~l~rq~sRv 157 (691)
T KOG2048|consen 99 TLKQKYNIDSNG---GAIWSIAINPENTILAIGC------------------DDGVLYDFSIGPDKITYKRSLMRQKSRV 157 (691)
T ss_pred cCceeEEecCCC---cceeEEEeCCccceEEeec------------------CCceEEEEecCCceEEEEeecccccceE
Confidence 5 2222112222 235677777766 455552 234566666655555432 2222445
Q ss_pred CcEEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199 238 NGVVLSPDQTHLVYCETSMRRCRKFYIK 265 (393)
Q Consensus 238 ngi~~s~dg~~l~v~~~~~~ri~~~~~~ 265 (393)
-.+++.+++ +-+++++.++.|..+|.+
T Consensus 158 Lslsw~~~~-~~i~~Gs~Dg~Iriwd~~ 184 (691)
T KOG2048|consen 158 LSLSWNPTG-TKIAGGSIDGVIRIWDVK 184 (691)
T ss_pred EEEEecCCc-cEEEecccCceEEEEEcC
Confidence 567788888 345788888999999975
No 199
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.67 E-value=3.1 Score=42.86 Aligned_cols=111 Identities=12% Similarity=0.142 Sum_probs=59.9
Q ss_pred CEEEEEecCCeEEEEEcCCCCCcceeeeeecCC--Cc--------eeeeEECCCCCCCCceEEEEEeCCCceEEEeCC-c
Q 016199 95 KLIYTGCEDGWIKRVTLNDSPADSLVHNWINTG--GR--------PLGIAFANSDPDADRITMIVADAYKGLLKISGN-S 163 (393)
Q Consensus 95 ~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~--~~--------p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~-g 163 (393)
+++|+++.++.|+.+|.++++ ..++.-.... .. ..++++. ++ ++|+++....|+.+|.+ |
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk--~lW~~~~~~~~~~~~~~~~~~~~rg~av~-~~------~v~v~t~dg~l~ALDa~TG 140 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGK--ELWKYDPKLPDDVIPVMCCDVVNRGVALY-DG------KVFFGTLDARLVALDAKTG 140 (527)
T ss_pred CEEEEECCCCcEEEEECCCCc--eeeEecCCCCcccccccccccccccceEE-CC------EEEEEcCCCEEEEEECCCC
Confidence 369999988999999988764 1111111100 00 1233443 46 89999877889999985 4
Q ss_pred eEEEeeccCCcc--ccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeE
Q 016199 164 TVLLTDEAEGQK--FKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKET 227 (393)
Q Consensus 164 ~~~l~~~~~g~~--~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~ 227 (393)
............ ......-.+ .+|.+|++..+.++ ...|.|+.+|..||+.
T Consensus 141 k~~W~~~~~~~~~~~~~tssP~v-~~g~Vivg~~~~~~------------~~~G~v~AlD~~TG~~ 193 (527)
T TIGR03075 141 KVVWSKKNGDYKAGYTITAAPLV-VKGKVITGISGGEF------------GVRGYVTAYDAKTGKL 193 (527)
T ss_pred CEEeecccccccccccccCCcEE-ECCEEEEeeccccc------------CCCcEEEEEECCCCce
Confidence 333322221111 000011112 25688887543221 2346777888777754
No 200
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=95.66 E-value=1.5 Score=39.19 Aligned_cols=77 Identities=12% Similarity=0.084 Sum_probs=48.1
Q ss_pred cccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeE-EEEecCccCCCcEEEcCCCCEEEEEe
Q 016199 175 KFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKET-KVLVSDLYFANGVVLSPDQTHLVYCE 253 (393)
Q Consensus 175 ~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~-~~~~~~l~~~ngi~~s~dg~~l~v~~ 253 (393)
+...+..+++||.|+|.++- .....-..||..+++. ..+.....-...+.|+|.-. .+.+.
T Consensus 230 essavaav~vdpsgrll~sg-----------------~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~-yllt~ 291 (350)
T KOG0641|consen 230 ESSAVAAVAVDPSGRLLASG-----------------HADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAH-YLLTC 291 (350)
T ss_pred ccceeEEEEECCCcceeeec-----------------cCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCce-EEEEe
Confidence 33456778999999998873 2223455566655543 22222233345677888764 44666
Q ss_pred CCCCeEEEEEecCCCC
Q 016199 254 TSMRRCRKFYIKGKNA 269 (393)
Q Consensus 254 ~~~~ri~~~~~~g~~~ 269 (393)
+....|..-+++|+-+
T Consensus 292 syd~~ikltdlqgdla 307 (350)
T KOG0641|consen 292 SYDMKIKLTDLQGDLA 307 (350)
T ss_pred cccceEEEeecccchh
Confidence 7788898888887643
No 201
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=95.63 E-value=2.2 Score=40.84 Aligned_cols=258 Identities=14% Similarity=0.123 Sum_probs=142.4
Q ss_pred cCceEEecCccCCCceEEEecCCC-EEEEEecCCeEEEEEcCCCCCcce---------eeeeecCCCc-eeeeEECCCCC
Q 016199 72 QGSEKVGYGVLKGPEDLLYDAHSK-LIYTGCEDGWIKRVTLNDSPADSL---------VHNWINTGGR-PLGIAFANSDP 140 (393)
Q Consensus 72 ~~~~~l~~g~~~~Pe~ia~d~~g~-~L~~~~~~g~I~~~~~~~~~~~~~---------~~~~~~~~~~-p~gl~~d~~G~ 140 (393)
+...++.......-.++++-|.+. .|-++...| |..|..+..-+... .+.+...+.. ...|...+||
T Consensus 130 t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dg- 207 (445)
T KOG2139|consen 130 TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDG- 207 (445)
T ss_pred CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCC-
Confidence 344445444456667788888654 455666555 66555432111000 0111111222 3578888899
Q ss_pred CCCceEEEEEeCC--CceEEEeCCc--eEEEe-eccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCc
Q 016199 141 DADRITMIVADAY--KGLLKISGNS--TVLLT-DEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNG 215 (393)
Q Consensus 141 ~~~~~~L~v~~~~--~gl~~id~~g--~~~l~-~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g 215 (393)
..|+..+. ..|...|++. ...+. ....| ..-+..+|||..+|+. +. .
T Consensus 208 -----t~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg-----~slLkwSPdgd~lfaA-----------------t~-d 259 (445)
T KOG2139|consen 208 -----TILVTASFGSSSIMIWDPDTGQKIPLIPKGLGG-----FSLLKWSPDGDVLFAA-----------------TC-D 259 (445)
T ss_pred -----CEEeecccCcceEEEEcCCCCCcccccccCCCc-----eeeEEEcCCCCEEEEe-----------------cc-c
Confidence 88887653 3477788765 22332 11112 2346899999877763 22 2
Q ss_pred EEEEEeCCCCeE--EEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCC-----c---ceeeeeccC------
Q 016199 216 RLLSFDPVTKET--KVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNA-----G---RVEKFIETL------ 279 (393)
Q Consensus 216 ~l~~~d~~t~~~--~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~-----~---~~~~~~~~l------ 279 (393)
++++.-..+... +.-..+-....+-+++|+|++|+++-...-+|+....+++.. + .....+ .+
T Consensus 260 avfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~llia-DL~e~ti~ 338 (445)
T KOG2139|consen 260 AVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIA-DLQEVTIC 338 (445)
T ss_pred ceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeec-cchhhhhh
Confidence 456554322222 222222336677889999999999999999999988765421 0 111111 11
Q ss_pred ------CCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEee-
Q 016199 280 ------PGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYY- 352 (393)
Q Consensus 280 ------~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~- 352 (393)
.|-+..++-|+.|.+.+....+.+-..++ ...+.+||.....+..+.
T Consensus 339 ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~--------------------------k~~i~~fdtr~sp~vels~ 392 (445)
T KOG2139|consen 339 AGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLC--------------------------KLHISRFDTRKSPPVELSY 392 (445)
T ss_pred cCcccccCccceeeECCCCCEEEEEEcCCchhhhh--------------------------hhhhhhhcccccCceEEEe
Confidence 13456789999999888776553211100 012444543322222221
Q ss_pred -----CCCCCccEEEEE-eCCEEEEEecCCCeEEEEeCCC
Q 016199 353 -----DPEMSLISSAIK-IGDHLYCGSVHHRGILHLDVNQ 386 (393)
Q Consensus 353 -----d~~~~~~~~~~~-~~g~Lyigs~~~~~i~~~~~~~ 386 (393)
++....+++... .++.|..-..+..++.+|++.-
T Consensus 393 cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~f 432 (445)
T KOG2139|consen 393 CGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLTF 432 (445)
T ss_pred cccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeEE
Confidence 111445554433 4578888888899999998753
No 202
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=95.63 E-value=1.8 Score=39.83 Aligned_cols=150 Identities=9% Similarity=0.106 Sum_probs=94.2
Q ss_pred eEEEecC-CCEEEEEecCCeEEEEEcCCCCCcceeee--eec--CCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeC
Q 016199 87 DLLYDAH-SKLIYTGCEDGWIKRVTLNDSPADSLVHN--WIN--TGGRPLGIAFANSDPDADRITMIVADAYKGLLKISG 161 (393)
Q Consensus 87 ~ia~d~~-g~~L~~~~~~g~I~~~~~~~~~~~~~~~~--~~~--~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~ 161 (393)
.+|+.|. |..|+.+..+..|..++..... . +.- ... .......++..|.| +++.+........+-.
T Consensus 19 ~~awhp~~g~ilAscg~Dk~vriw~~~~~~--s-~~ck~vld~~hkrsVRsvAwsp~g------~~La~aSFD~t~~Iw~ 89 (312)
T KOG0645|consen 19 SVAWHPGKGVILASCGTDKAVRIWSTSSGD--S-WTCKTVLDDGHKRSVRSVAWSPHG------RYLASASFDATVVIWK 89 (312)
T ss_pred EEEeccCCceEEEeecCCceEEEEecCCCC--c-EEEEEeccccchheeeeeeecCCC------cEEEEeeccceEEEee
Confidence 4788887 6656666778777777765321 0 211 111 12346789999999 8766666666544432
Q ss_pred --Cc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCC-CCeEEE---EecCc
Q 016199 162 --NS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPV-TKETKV---LVSDL 234 (393)
Q Consensus 162 --~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~-t~~~~~---~~~~l 234 (393)
++ ++.+ ...+|.. +-+..+++.++|++..+.+ ....|+.+..+ ..+++. +....
T Consensus 90 k~~~efecv-~~lEGHE-nEVK~Vaws~sG~~LATCS-----------------RDKSVWiWe~deddEfec~aVL~~Ht 150 (312)
T KOG0645|consen 90 KEDGEFECV-ATLEGHE-NEVKCVAWSASGNYLATCS-----------------RDKSVWIWEIDEDDEFECIAVLQEHT 150 (312)
T ss_pred cCCCceeEE-eeeeccc-cceeEEEEcCCCCEEEEee-----------------CCCeEEEEEecCCCcEEEEeeecccc
Confidence 33 4443 3456654 3467899999999888863 33456666443 234332 34445
Q ss_pred cCCCcEEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199 235 YFANGVVLSPDQTHLVYCETSMRRCRKFYIK 265 (393)
Q Consensus 235 ~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~ 265 (393)
.-.-.+.+.|-. -|+++.+..+.|..|+-.
T Consensus 151 qDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~ 180 (312)
T KOG0645|consen 151 QDVKHVIWHPTE-DLLFSCSYDNTIKVYRDE 180 (312)
T ss_pred ccccEEEEcCCc-ceeEEeccCCeEEEEeec
Confidence 556778899876 478888999988887754
No 203
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=95.54 E-value=1.9 Score=39.62 Aligned_cols=158 Identities=7% Similarity=0.023 Sum_probs=93.1
Q ss_pred eEEecCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeec---CCCceeeeEECCCCCCCCceEEEEEe
Q 016199 75 EKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWIN---TGGRPLGIAFANSDPDADRITMIVAD 151 (393)
Q Consensus 75 ~~l~~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~---~~~~p~gl~~d~~G~~~~~~~L~v~~ 151 (393)
..+.++....-+++|+.|.|+.|-.++.|..+..+...++. ++-... ......++++.++| +++..-
T Consensus 54 ~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~e----fecv~~lEGHEnEVK~Vaws~sG------~~LATC 123 (312)
T KOG0645|consen 54 TVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGE----FECVATLEGHENEVKCVAWSASG------NYLATC 123 (312)
T ss_pred EeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCc----eeEEeeeeccccceeEEEEcCCC------CEEEEe
Confidence 34445556778889999999988888889988888776655 554433 23456799999999 554442
Q ss_pred C-CCceE--EEeCCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeE
Q 016199 152 A-YKGLL--KISGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKET 227 (393)
Q Consensus 152 ~-~~gl~--~id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~ 227 (393)
. +..+. .++.++ .+..+ -.++. ..-+..+...|.-.|.|+.++ ..+-++|+.++ ....
T Consensus 124 SRDKSVWiWe~deddEfec~a-VL~~H-tqDVK~V~WHPt~dlL~S~SY---------------DnTIk~~~~~~-dddW 185 (312)
T KOG0645|consen 124 SRDKSVWIWEIDEDDEFECIA-VLQEH-TQDVKHVIWHPTEDLLFSCSY---------------DNTIKVYRDED-DDDW 185 (312)
T ss_pred eCCCeEEEEEecCCCcEEEEe-eeccc-cccccEEEEcCCcceeEEecc---------------CCeEEEEeecC-CCCe
Confidence 3 34444 445444 33222 11111 112346778887778887532 23456777664 3333
Q ss_pred EEE--ecC-ccCCCcEEEcCCCCEEEEEeCCCCeEEE
Q 016199 228 KVL--VSD-LYFANGVVLSPDQTHLVYCETSMRRCRK 261 (393)
Q Consensus 228 ~~~--~~~-l~~~ngi~~s~dg~~l~v~~~~~~ri~~ 261 (393)
... +++ -...-.++|++.|..+ ++.+..+.+..
T Consensus 186 ~c~~tl~g~~~TVW~~~F~~~G~rl-~s~sdD~tv~I 221 (312)
T KOG0645|consen 186 ECVQTLDGHENTVWSLAFDNIGSRL-VSCSDDGTVSI 221 (312)
T ss_pred eEEEEecCccceEEEEEecCCCceE-EEecCCcceEe
Confidence 322 222 2345678889988554 44444444433
No 204
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.53 E-value=3.5 Score=42.49 Aligned_cols=54 Identities=22% Similarity=0.148 Sum_probs=33.4
Q ss_pred ceEEEECCC-CcEEEEeeC-C-C-----C-CccEEEE-EeCCE---EEEEecCCCeEEEEeCCCCCC
Q 016199 336 SGVFIVDLD-GKPIAHYYD-P-E-----M-SLISSAI-KIGDH---LYCGSVHHRGILHLDVNQHPA 389 (393)
Q Consensus 336 ~~v~~~d~~-g~~~~~~~d-~-~-----~-~~~~~~~-~~~g~---Lyigs~~~~~i~~~~~~~~~~ 389 (393)
..|+.+|.+ |++.-+||. + + . .....+. +.+|+ +.+-.-.+.++..||....++
T Consensus 271 ~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 271 SSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred eeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 369999975 899888874 1 1 1 1112221 13443 666666777888998876554
No 205
>PRK13684 Ycf48-like protein; Provisional
Probab=95.43 E-value=2.7 Score=40.57 Aligned_cols=213 Identities=11% Similarity=0.059 Sum_probs=105.4
Q ss_pred EEEEecCCeEEEEEcCCCCCcceeeeeec---CCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCce--EEEeecc
Q 016199 97 IYTGCEDGWIKRVTLNDSPADSLVHNWIN---TGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNST--VLLTDEA 171 (393)
Q Consensus 97 L~~~~~~g~I~~~~~~~~~~~~~~~~~~~---~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g~--~~l~~~~ 171 (393)
.|+....|.|++-.-.+.+ ++.+.. ..+.+..+....++ .+|++...++|++-+..|. +.+....
T Consensus 102 ~~~~G~~g~i~~S~DgG~t----W~~~~~~~~~~~~~~~i~~~~~~------~~~~~g~~G~i~~S~DgG~tW~~~~~~~ 171 (334)
T PRK13684 102 GWIVGQPSLLLHTTDGGKN----WTRIPLSEKLPGSPYLITALGPG------TAEMATNVGAIYRTTDGGKNWEALVEDA 171 (334)
T ss_pred EEEeCCCceEEEECCCCCC----CeEccCCcCCCCCceEEEEECCC------cceeeeccceEEEECCCCCCceeCcCCC
Confidence 4555556666664322223 444321 12345555544445 6777755555666654442 1221111
Q ss_pred CCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEE-eCCCCeEEEEecC-ccCCCcEEEcCCCCEE
Q 016199 172 EGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSF-DPVTKETKVLVSD-LYFANGVVLSPDQTHL 249 (393)
Q Consensus 172 ~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~-d~~t~~~~~~~~~-l~~~ngi~~s~dg~~l 249 (393)
....+++.+.++|.+++.. ..|.+++- +..+...+.+... ....+++++.++++.+
T Consensus 172 ----~g~~~~i~~~~~g~~v~~g------------------~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~ 229 (334)
T PRK13684 172 ----AGVVRNLRRSPDGKYVAVS------------------SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLW 229 (334)
T ss_pred ----cceEEEEEECCCCeEEEEe------------------CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEE
Confidence 1235678888888666552 34556665 3332335444332 3456788888888654
Q ss_pred EEEeCCCCeEEEEE-ecCCCCcceeeeeccCCCC-----CCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhh
Q 016199 250 VYCETSMRRCRKFY-IKGKNAGRVEKFIETLPGL-----PDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVV 323 (393)
Q Consensus 250 ~v~~~~~~ri~~~~-~~g~~~~~~~~~~~~l~g~-----P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~ 323 (393)
.+ .. .+ ..++. -++-. ..+.. ..|.. .-.+++.+++++|++...
T Consensus 230 ~v-g~-~G-~~~~~s~d~G~--sW~~~--~~~~~~~~~~l~~v~~~~~~~~~~~G~~----------------------- 279 (334)
T PRK13684 230 ML-AR-GG-QIRFNDPDDLE--SWSKP--IIPEITNGYGYLDLAYRTPGEIWAGGGN----------------------- 279 (334)
T ss_pred EE-ec-CC-EEEEccCCCCC--ccccc--cCCccccccceeeEEEcCCCCEEEEcCC-----------------------
Confidence 44 33 23 33442 22110 11111 11111 134667778889987552
Q ss_pred hhhCCCCCCCCCceEEEECCCCcEEEEeeCCC-C--CccEEEEEeCCEEEEEecCCCeEEEEeC
Q 016199 324 RYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPE-M--SLISSAIKIGDHLYCGSVHHRGILHLDV 384 (393)
Q Consensus 324 ~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~-~--~~~~~~~~~~g~Lyigs~~~~~i~~~~~ 384 (393)
+.+++-...|+..+....+. . .....+..++++.|+.+ ...-|.+++-
T Consensus 280 ------------G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~G~il~~~~ 330 (334)
T PRK13684 280 ------------GTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-QRGVLLRYVG 330 (334)
T ss_pred ------------CeEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-CCceEEEecC
Confidence 34554444566655543211 1 23334455677888875 3446666653
No 206
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=95.28 E-value=0.69 Score=43.91 Aligned_cols=125 Identities=14% Similarity=0.125 Sum_probs=74.4
Q ss_pred cccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec-C-----------ccCCCcEEEc-
Q 016199 177 KLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS-D-----------LYFANGVVLS- 243 (393)
Q Consensus 177 ~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~-~-----------l~~~ngi~~s- 243 (393)
-++|+|..+++|++.++. .....|+++|+.+|++.=.+. . +.+.+...+.
T Consensus 144 ~HiNsV~~~~~G~yLiS~-----------------R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~ 206 (299)
T PF14269_consen 144 FHINSVDKDDDGDYLISS-----------------RNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLN 206 (299)
T ss_pred cEeeeeeecCCccEEEEe-----------------cccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEec
Confidence 357899999999988874 334579999988876543332 1 2333444444
Q ss_pred ---CCCCEEEEEeC---------CCCeEEEEEecCCCCcceeeeecc-CC---CCCCeEEECCCCCEEEEEecCcchhhh
Q 016199 244 ---PDQTHLVYCET---------SMRRCRKFYIKGKNAGRVEKFIET-LP---GLPDNIRYDGEGHYLIALATEFSTYWD 307 (393)
Q Consensus 244 ---~dg~~l~v~~~---------~~~ri~~~~~~g~~~~~~~~~~~~-l~---g~P~~i~~d~~G~lwva~~~~r~~~~~ 307 (393)
.++...++-+. .++++..++...........+.+. .+ ....++..-++|+++|+-...
T Consensus 207 ~~~~~~~IslFDN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nGn~li~~g~~------ 280 (299)
T PF14269_consen 207 ESNDDGTISLFDNANSDFNGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNGNVLIGWGNN------ 280 (299)
T ss_pred cCCCCCEEEEEcCCCCCCCCCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCCCEEEecCCC------
Confidence 34433333331 456777777653222222222211 01 122345567789999886643
Q ss_pred hhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEee
Q 016199 308 LAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYY 352 (393)
Q Consensus 308 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~ 352 (393)
+.+..++++|+++-.++
T Consensus 281 ----------------------------g~~~E~~~~G~vv~~~~ 297 (299)
T PF14269_consen 281 ----------------------------GRISEFTPDGEVVWEAQ 297 (299)
T ss_pred ----------------------------ceEEEECCCCCEEEEEE
Confidence 56999999999987665
No 207
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=95.26 E-value=0.55 Score=50.37 Aligned_cols=148 Identities=14% Similarity=0.221 Sum_probs=83.1
Q ss_pred CceEEEecCCCEEEEEecCCeEEEEEcCC-CC--------Ccceeeee------ecCCCceeeeEECCCCCCCCceEEEE
Q 016199 85 PEDLLYDAHSKLIYTGCEDGWIKRVTLND-SP--------ADSLVHNW------INTGGRPLGIAFANSDPDADRITMIV 149 (393)
Q Consensus 85 Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~-~~--------~~~~~~~~------~~~~~~p~gl~~d~~G~~~~~~~L~v 149 (393)
-.++.|++||+.|+.|+.|.-|..|.... +. +...++.| ....+....++.++++ .+++
T Consensus 72 v~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~------~~lv 145 (942)
T KOG0973|consen 72 VNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD------SLLV 145 (942)
T ss_pred eeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc------cEEE
Confidence 34566999999999998887555555441 00 01112222 2234556788899988 6666
Q ss_pred EeC-CCceEEEeCCceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEE
Q 016199 150 ADA-YKGLLKISGNSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETK 228 (393)
Q Consensus 150 ~~~-~~gl~~id~~g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~ 228 (393)
.-. +.-|..++...++.+ ....+.. ..+-|+.+||-|..+.+. +....|..|....-.++
T Consensus 146 S~s~DnsViiwn~~tF~~~-~vl~~H~-s~VKGvs~DP~Gky~ASq-----------------sdDrtikvwrt~dw~i~ 206 (942)
T KOG0973|consen 146 SVSLDNSVIIWNAKTFELL-KVLRGHQ-SLVKGVSWDPIGKYFASQ-----------------SDDRTLKVWRTSDWGIE 206 (942)
T ss_pred EecccceEEEEccccceee-eeeeccc-ccccceEECCccCeeeee-----------------cCCceEEEEEcccceee
Confidence 644 455777876653222 2223322 457799999999866653 12233444442221222
Q ss_pred E-EecC------ccCCCcEEEcCCCCEEEEEeCCCC
Q 016199 229 V-LVSD------LYFANGVVLSPDQTHLVYCETSMR 257 (393)
Q Consensus 229 ~-~~~~------l~~~ngi~~s~dg~~l~v~~~~~~ 257 (393)
. +... ..+-.=+.++|||++|-.....++
T Consensus 207 k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~ 242 (942)
T KOG0973|consen 207 KSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNG 242 (942)
T ss_pred EeeccchhhCCCcceeeecccCCCcCeecchhhccC
Confidence 2 2111 112233668899988877665554
No 208
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=95.23 E-value=1.3 Score=43.42 Aligned_cols=149 Identities=13% Similarity=0.106 Sum_probs=85.1
Q ss_pred cCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc-eEE----
Q 016199 92 AHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS-TVL---- 166 (393)
Q Consensus 92 ~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g-~~~---- 166 (393)
..++.+-+|..|..+..|+..... ...|...++.+..+++-.+. .+..|...+-|..++... ..+
T Consensus 296 ~reR~vtVGgrDrT~rlwKi~ees----qlifrg~~~sidcv~~In~~------HfvsGSdnG~IaLWs~~KKkplf~~~ 365 (479)
T KOG0299|consen 296 SRERCVTVGGRDRTVRLWKIPEES----QLIFRGGEGSIDCVAFINDE------HFVSGSDNGSIALWSLLKKKPLFTSR 365 (479)
T ss_pred cccceEEeccccceeEEEeccccc----eeeeeCCCCCeeeEEEeccc------ceeeccCCceEEEeeecccCceeEee
Confidence 344445555566655555553332 34444456678888887776 677775455577766433 111
Q ss_pred EeeccCC--ccc---cccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec--CccCCCc
Q 016199 167 LTDEAEG--QKF---KLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS--DLYFANG 239 (393)
Q Consensus 167 l~~~~~g--~~~---~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~--~l~~~ng 239 (393)
++..... .+. .+++++++-+.-+|..+-+. .+.-+||.....-..+..+.. -..+.|.
T Consensus 366 ~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~---------------~G~vrLW~i~~g~r~i~~l~~ls~~GfVNs 430 (479)
T KOG0299|consen 366 LAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSW---------------SGCVRLWKIEDGLRAINLLYSLSLVGFVNS 430 (479)
T ss_pred ccccccCCccccccccceeeeEecccCceEEecCC---------------CCceEEEEecCCccccceeeecccccEEEE
Confidence 1111111 111 25667776665566555321 234566766654334443321 2357899
Q ss_pred EEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199 240 VVLSPDQTHLVYCETSMRRCRKFYIK 265 (393)
Q Consensus 240 i~~s~dg~~l~v~~~~~~ri~~~~~~ 265 (393)
++|+.+|+++++.--...|+-||+..
T Consensus 431 l~f~~sgk~ivagiGkEhRlGRW~~~ 456 (479)
T KOG0299|consen 431 LAFSNSGKRIVAGIGKEHRLGRWWCL 456 (479)
T ss_pred EEEccCCCEEEEecccccccceeeEe
Confidence 99999999888876666788888764
No 209
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=95.23 E-value=4 Score=41.38 Aligned_cols=176 Identities=13% Similarity=0.149 Sum_probs=96.5
Q ss_pred cccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeE-EEEecCccCCCcEEEcCCCCEEEEEeCCC
Q 016199 179 TDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKET-KVLVSDLYFANGVVLSPDQTHLVYCETSM 256 (393)
Q Consensus 179 ~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~-~~~~~~l~~~ngi~~s~dg~~l~v~~~~~ 256 (393)
..++..+.-. .||++-+ ...|||++.+.|++ ..+.......|.+.+.+-. .|+.+++..
T Consensus 136 GRDm~y~~~scDly~~gs------------------g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~h-gLla~Gt~~ 196 (703)
T KOG2321|consen 136 GRDMKYHKPSCDLYLVGS------------------GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEH-GLLACGTED 196 (703)
T ss_pred CccccccCCCccEEEeec------------------CcceEEEEccccccccccccccccceeeeecCcc-ceEEecccC
Confidence 4466666543 7887732 23599999987764 3344445566888887665 688888888
Q ss_pred CeEEEEEecCCC-Ccceeee--eccCCCC-----CCeEEECCCCC-EEEEEecCcchhhhhhhcCcchhhh-hhhhhhhh
Q 016199 257 RRCRKFYIKGKN-AGRVEKF--IETLPGL-----PDNIRYDGEGH-YLIALATEFSTYWDLAYRYPFIRKV-SGMVVRYL 326 (393)
Q Consensus 257 ~ri~~~~~~g~~-~~~~~~~--~~~l~g~-----P~~i~~d~~G~-lwva~~~~r~~~~~~~~~~~~~r~~-~~~~~~~~ 326 (393)
+.+-.||..... .+..+.- ++..|+. +..+.++.+|- +=|++..+..-+.|+=+..|.+++- ...+|--.
T Consensus 197 g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~ 276 (703)
T KOG2321|consen 197 GVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKK 276 (703)
T ss_pred ceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceee
Confidence 999888875321 2222211 2223432 45567776663 5566666655666777777765543 33333211
Q ss_pred CCCCCCCCCceEEEEC--------C-CCcEEEEeeCC-CCCccEEEEEeCCEEEEEec
Q 016199 327 GMPPMGKSSSGVFIVD--------L-DGKPIAHYYDP-EMSLISSAIKIGDHLYCGSV 374 (393)
Q Consensus 327 ~~~~~~~~~~~v~~~d--------~-~g~~~~~~~d~-~~~~~~~~~~~~g~Lyigs~ 374 (393)
--|........|+-.| + +|+.+.++..- +.+.+|. ++..|-++++.-
T Consensus 277 l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~-~p~sGm~f~Ane 333 (703)
T KOG2321|consen 277 LDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCF-VPGSGMFFTANE 333 (703)
T ss_pred ecccccCCCceEEecchHHhhhcccccCCceeeccccCCcCceee-ecCCceEEEecC
Confidence 0011111112233332 2 36666665532 2555543 555566666643
No 210
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=95.13 E-value=1.1 Score=43.34 Aligned_cols=153 Identities=16% Similarity=0.261 Sum_probs=86.5
Q ss_pred EEEecCC-CEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeC-CCceEEEeCCceE
Q 016199 88 LLYDAHS-KLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADA-YKGLLKISGNSTV 165 (393)
Q Consensus 88 ia~d~~g-~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~-~~gl~~id~~g~~ 165 (393)
+++.|-- +.|..+..|..|..|+..++.. .-... .......+.|..|| .++++.. +..|..+|+..-+
T Consensus 137 V~wHPtA~NVLlsag~Dn~v~iWnv~tgea---li~l~-hpd~i~S~sfn~dG------s~l~TtckDKkvRv~dpr~~~ 206 (472)
T KOG0303|consen 137 VQWHPTAPNVLLSAGSDNTVSIWNVGTGEA---LITLD-HPDMVYSMSFNRDG------SLLCTTCKDKKVRVIDPRRGT 206 (472)
T ss_pred EeecccchhhHhhccCCceEEEEeccCCce---eeecC-CCCeEEEEEeccCC------ceeeeecccceeEEEcCCCCc
Confidence 4555522 3455555677888888887651 12222 34557889999999 8888766 4557778875422
Q ss_pred EEee--ccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEE--
Q 016199 166 LLTD--EAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVV-- 241 (393)
Q Consensus 166 ~l~~--~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~-- 241 (393)
++.. ..+|. .+.-..+-.+|.+ ++...++..- -.+-.+|++.=+.-.....+...|||-
T Consensus 207 ~v~e~~~heG~---k~~Raifl~~g~i-~tTGfsr~se-------------Rq~aLwdp~nl~eP~~~~elDtSnGvl~P 269 (472)
T KOG0303|consen 207 VVSEGVAHEGA---KPARAIFLASGKI-FTTGFSRMSE-------------RQIALWDPNNLEEPIALQELDTSNGVLLP 269 (472)
T ss_pred EeeecccccCC---CcceeEEeccCce-eeeccccccc-------------cceeccCcccccCcceeEEeccCCceEEe
Confidence 2221 22232 2234455667774 4433332211 123334443211111122334456655
Q ss_pred -EcCCCCEEEEEeCCCCeEEEEEecCC
Q 016199 242 -LSPDQTHLVYCETSMRRCRKFYIKGK 267 (393)
Q Consensus 242 -~s~dg~~l~v~~~~~~ri~~~~~~g~ 267 (393)
+++|.+.+|++.-+.+.|.-|.+..+
T Consensus 270 FyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 270 FYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred eecCCCCEEEEEecCCcceEEEEecCC
Confidence 47888899999999998888887654
No 211
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=95.13 E-value=2.6 Score=38.64 Aligned_cols=101 Identities=9% Similarity=0.020 Sum_probs=63.1
Q ss_pred ccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCC
Q 016199 178 LTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSM 256 (393)
Q Consensus 178 ~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~ 256 (393)
.+..++.++.. .++++.+ +...+.++|...++.......-....-++++|+|+++.+.+. .
T Consensus 66 svdql~w~~~~~d~~atas-----------------~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~k-d 127 (313)
T KOG1407|consen 66 SVDQLCWDPKHPDLFATAS-----------------GDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNK-D 127 (313)
T ss_pred chhhheeCCCCCcceEEec-----------------CCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecC-c
Confidence 46677888755 6666642 334577788766655444333344556889999988877664 6
Q ss_pred CeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEec
Q 016199 257 RRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALAT 300 (393)
Q Consensus 257 ~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~ 300 (393)
.+|.-++....+....+ +.+..-+.++...++++++.+.+
T Consensus 128 D~it~id~r~~~~~~~~----~~~~e~ne~~w~~~nd~Fflt~G 167 (313)
T KOG1407|consen 128 DRITFIDARTYKIVNEE----QFKFEVNEISWNNSNDLFFLTNG 167 (313)
T ss_pred ccEEEEEecccceeehh----cccceeeeeeecCCCCEEEEecC
Confidence 78888886432211111 22334567888778888887765
No 212
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=95.09 E-value=1.1 Score=43.38 Aligned_cols=130 Identities=15% Similarity=0.127 Sum_probs=80.1
Q ss_pred EEEEec-CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc--eEEEeeccCC
Q 016199 97 IYTGCE-DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS--TVLLTDEAEG 173 (393)
Q Consensus 97 L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g--~~~l~~~~~g 173 (393)
.+++.+ ++.|..|+..+.. .....+.++....+....+| ..+..+.-..-+-.+|..+ .... ....+
T Consensus 314 ~~~SgH~DkkvRfwD~Rs~~----~~~sv~~gg~vtSl~ls~~g-----~~lLsssRDdtl~viDlRt~eI~~~-~sA~g 383 (459)
T KOG0288|consen 314 DVISGHFDKKVRFWDIRSAD----KTRSVPLGGRVTSLDLSMDG-----LELLSSSRDDTLKVIDLRTKEIRQT-FSAEG 383 (459)
T ss_pred eeeecccccceEEEeccCCc----eeeEeecCcceeeEeeccCC-----eEEeeecCCCceeeeecccccEEEE-eeccc
Confidence 444444 7788888866554 33333456777788888877 2466664455677777766 2221 12233
Q ss_pred cc-ccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccC---CCcEEEcCCCCEE
Q 016199 174 QK-FKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYF---ANGVVLSPDQTHL 249 (393)
Q Consensus 174 ~~-~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~---~ngi~~s~dg~~l 249 (393)
.. ....+.+.++|+|.+..+ |+..|.||.++..+++++.....-.. .+.+++++-|+.+
T Consensus 384 ~k~asDwtrvvfSpd~~YvaA-----------------GS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~L 446 (459)
T KOG0288|consen 384 FKCASDWTRVVFSPDGSYVAA-----------------GSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGL 446 (459)
T ss_pred cccccccceeEECCCCceeee-----------------ccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchh
Confidence 22 122456789998876555 25678999999999998876544222 3456677777666
Q ss_pred EEEe
Q 016199 250 VYCE 253 (393)
Q Consensus 250 ~v~~ 253 (393)
+-++
T Consensus 447 lsad 450 (459)
T KOG0288|consen 447 LSAD 450 (459)
T ss_pred hccc
Confidence 5444
No 213
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.06 E-value=2.3 Score=37.76 Aligned_cols=131 Identities=15% Similarity=0.120 Sum_probs=72.2
Q ss_pred cEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCC-CcceeeeeccCCCCCCe-EE--ECC
Q 016199 215 GRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKN-AGRVEKFIETLPGLPDN-IR--YDG 290 (393)
Q Consensus 215 g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~-~~~~~~~~~~l~g~P~~-i~--~d~ 290 (393)
|--|.||+++- +.+-..-..-.|-.++.|++.|+.++ ++..+...|++.-. .....+-. .|.|-. +. .--
T Consensus 111 gvaf~~d~~t~--~~lg~~~y~GeGWgLt~d~~~Limsd-GsatL~frdP~tfa~~~~v~VT~---~g~pv~~LNELE~V 184 (262)
T COG3823 111 GVAFKYDADTL--EELGRFSYEGEGWGLTSDDKNLIMSD-GSATLQFRDPKTFAELDTVQVTD---DGVPVSKLNELEWV 184 (262)
T ss_pred ceeEEEChHHh--hhhcccccCCcceeeecCCcceEeeC-CceEEEecCHHHhhhcceEEEEE---CCeecccccceeee
Confidence 45688988652 22222222235677778888877665 45677766664322 12222222 233321 11 112
Q ss_pred CCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCC-CcEEEEeeCCC--------------
Q 016199 291 EGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLD-GKPIAHYYDPE-------------- 355 (393)
Q Consensus 291 ~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~~~~~d~~-------------- 355 (393)
||.+|.-.+.. ..|.+++|+ |+++.-+.-..
T Consensus 185 dG~lyANVw~t----------------------------------~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nv 230 (262)
T COG3823 185 DGELYANVWQT----------------------------------TRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNV 230 (262)
T ss_pred ccEEEEeeeee----------------------------------cceEEEcCCCCcEEEEEEccCCchhcCcccccccc
Confidence 56555544422 348899985 77777655221
Q ss_pred CCccEEEEEeCCEEEEEecCCCeEEEEeCCC
Q 016199 356 MSLISSAIKIGDHLYCGSVHHRGILHLDVNQ 386 (393)
Q Consensus 356 ~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~~ 386 (393)
.+.+ ...+..+++|+++-.-+.+..+++.+
T Consensus 231 lNGI-A~~~~~~r~~iTGK~wp~lfEVk~~~ 260 (262)
T COG3823 231 LNGI-AHDPQQDRFLITGKLWPLLFEVKLDE 260 (262)
T ss_pred ccce-eecCcCCeEEEecCcCceeEEEEecC
Confidence 2222 23455689999998888888877654
No 214
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=95.05 E-value=4 Score=40.39 Aligned_cols=58 Identities=12% Similarity=0.080 Sum_probs=31.1
Q ss_pred cEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEec
Q 016199 239 GVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALAT 300 (393)
Q Consensus 239 gi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~ 300 (393)
++..++||+.+.+... +.+++-+-.|... -+......+..-.++.++.+|.+|++...
T Consensus 243 ~v~~~~dG~~~~vg~~--G~~~~s~d~G~~~--W~~~~~~~~~~l~~v~~~~dg~l~l~g~~ 300 (398)
T PLN00033 243 TVNRSPDGDYVAVSSR--GNFYLTWEPGQPY--WQPHNRASARRIQNMGWRADGGLWLLTRG 300 (398)
T ss_pred eEEEcCCCCEEEEECC--ccEEEecCCCCcc--eEEecCCCccceeeeeEcCCCCEEEEeCC
Confidence 4556788865555543 5566655333210 01111111223346777889999998764
No 215
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=95.01 E-value=2.9 Score=38.50 Aligned_cols=162 Identities=16% Similarity=0.130 Sum_probs=95.8
Q ss_pred CceEEec--CccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEE
Q 016199 73 GSEKVGY--GVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVA 150 (393)
Q Consensus 73 ~~~~l~~--g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~ 150 (393)
..|+|++ |..-.--++.+|.+.+.+.+|+.|..+..|+.++++ ....+ ..+.....+.|+.+| ++.++
T Consensus 41 nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk---~la~~-k~~~~Vk~~~F~~~g------n~~l~ 110 (327)
T KOG0643|consen 41 NGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGK---QLATW-KTNSPVKRVDFSFGG------NLILA 110 (327)
T ss_pred CCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCc---EEEEe-ecCCeeEEEeeccCC------cEEEE
Confidence 4566665 322223346677777788899999888889988765 13333 334455778888888 76555
Q ss_pred eCC--Cc----eEEEeCC-------ceE-EEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcE
Q 016199 151 DAY--KG----LLKISGN-------STV-LLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGR 216 (393)
Q Consensus 151 ~~~--~g----l~~id~~-------g~~-~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~ 216 (393)
..+ .| |..++.. +.+ .+.-.... ..++....++-|...|+- ...|.
T Consensus 111 ~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~---skit~a~Wg~l~~~ii~G-----------------he~G~ 170 (327)
T KOG0643|consen 111 STDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD---SKITSALWGPLGETIIAG-----------------HEDGS 170 (327)
T ss_pred EehhhcCcceEEEEEEccCChhhhcccCceEEecCCc---cceeeeeecccCCEEEEe-----------------cCCCc
Confidence 332 22 3333321 111 11100111 234455677777555552 45678
Q ss_pred EEEEeCCCCeEEEEec--CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199 217 LLSFDPVTKETKVLVS--DLYFANGVVLSPDQTHLVYCETSMRRCRKFYIK 265 (393)
Q Consensus 217 l~~~d~~t~~~~~~~~--~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~ 265 (393)
|-+||..+++...-.. .....|.+.+++|. ..+++.+....--.+|..
T Consensus 171 is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl~D~~ 220 (327)
T KOG0643|consen 171 ISIYDARTGKELVDSDEEHSSKINDLQFSRDR-TYFITGSKDTTAKLVDVR 220 (327)
T ss_pred EEEEEcccCceeeechhhhccccccccccCCc-ceEEecccCccceeeecc
Confidence 9999998875433221 23467899999998 677777766655556653
No 216
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=95.01 E-value=0.84 Score=45.27 Aligned_cols=83 Identities=16% Similarity=0.225 Sum_probs=53.0
Q ss_pred CCcEEEEEeCCCCeEEEEec--CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECC
Q 016199 213 PNGRLLSFDPVTKETKVLVS--DLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDG 290 (393)
Q Consensus 213 ~~g~l~~~d~~t~~~~~~~~--~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~ 290 (393)
..|.|..||..+.....-.. .-....||+++|-++.|+++--...+|+.||....+....-.+ ..| -..+++.+
T Consensus 185 d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y--~~P--lstvaf~~ 260 (673)
T KOG4378|consen 185 DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY--SHP--LSTVAFSE 260 (673)
T ss_pred cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee--cCC--cceeeecC
Confidence 35778888875432211111 1234589999999999999998999999999864332222211 222 14588888
Q ss_pred CCCEEEEEe
Q 016199 291 EGHYLIALA 299 (393)
Q Consensus 291 ~G~lwva~~ 299 (393)
+|.++++..
T Consensus 261 ~G~~L~aG~ 269 (673)
T KOG4378|consen 261 CGTYLCAGN 269 (673)
T ss_pred CceEEEeec
Confidence 998776544
No 217
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=94.88 E-value=3.4 Score=38.99 Aligned_cols=135 Identities=14% Similarity=0.166 Sum_probs=75.7
Q ss_pred EEEEEeCCCCeEEEE------ecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCC--CCcceeeeecc---CCCCCC
Q 016199 216 RLLSFDPVTKETKVL------VSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGK--NAGRVEKFIET---LPGLPD 284 (393)
Q Consensus 216 ~l~~~d~~t~~~~~~------~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~--~~~~~~~~~~~---l~g~P~ 284 (393)
-|..+|.-+|+.+.- .+.+.-+..++|++||+.||.. .+..|..|++..+ ......++..+ +.|.-.
T Consensus 134 PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG--ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giis 211 (406)
T KOG2919|consen 134 PIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG--YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIIS 211 (406)
T ss_pred ceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec--ccceEEEeeccCCCCCCcchhhhhcccccccceee
Confidence 466667666665432 1234557889999999887664 3577888887522 11112222211 122333
Q ss_pred eEEECCCCC--EEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCCCCccEE-
Q 016199 285 NIRYDGEGH--YLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPEMSLISS- 361 (393)
Q Consensus 285 ~i~~d~~G~--lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~~~~~~~- 361 (393)
.+++.+-.. +=++....+ -+|+.- .+++.+..+.... ..++.
T Consensus 212 c~a~sP~~~~~~a~gsY~q~---------------------------------~giy~~-~~~~pl~llggh~-gGvThL 256 (406)
T KOG2919|consen 212 CFAFSPMDSKTLAVGSYGQR---------------------------------VGIYND-DGRRPLQLLGGHG-GGVTHL 256 (406)
T ss_pred eeeccCCCCcceeeecccce---------------------------------eeeEec-CCCCceeeecccC-CCeeeE
Confidence 344444322 223332211 134332 3556666666432 23332
Q ss_pred -EEEeCCEEEEEecCCCeEEEEeCCCC
Q 016199 362 -AIKIGDHLYCGSVHHRGILHLDVNQH 387 (393)
Q Consensus 362 -~~~~~g~Lyigs~~~~~i~~~~~~~~ 387 (393)
..+++++||.|+...++|.+-|+.++
T Consensus 257 ~~~edGn~lfsGaRk~dkIl~WDiR~~ 283 (406)
T KOG2919|consen 257 QWCEDGNKLFSGARKDDKILCWDIRYS 283 (406)
T ss_pred EeccCcCeecccccCCCeEEEEeehhc
Confidence 46788999999999999999887653
No 218
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=94.83 E-value=4.3 Score=39.63 Aligned_cols=107 Identities=18% Similarity=0.225 Sum_probs=60.8
Q ss_pred CCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCC--ceeeeEECCCCCCCCceEEEEEeCCCceEEEeCC-ceEEEee
Q 016199 93 HSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGG--RPLGIAFANSDPDADRITMIVADAYKGLLKISGN-STVLLTD 169 (393)
Q Consensus 93 ~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~--~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~-g~~~l~~ 169 (393)
+|+ +|+++.+|.+++++.++++ ........+ .-.+-.+-.++ .+|+....+.++.++.+ |......
T Consensus 111 ~G~-i~~g~~~g~~y~ld~~~G~----~~W~~~~~~~~~~~~~~v~~~~------~v~~~s~~g~~~al~~~tG~~~W~~ 179 (370)
T COG1520 111 DGK-IYVGSWDGKLYALDASTGT----LVWSRNVGGSPYYASPPVVGDG------TVYVGTDDGHLYALNADTGTLKWTY 179 (370)
T ss_pred CCe-EEEecccceEEEEECCCCc----EEEEEecCCCeEEecCcEEcCc------EEEEecCCCeEEEEEccCCcEEEEE
Confidence 775 9999999999999986554 222222222 11222333467 88888645668889887 5333321
Q ss_pred ccCC-ccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeE
Q 016199 170 EAEG-QKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKET 227 (393)
Q Consensus 170 ~~~g-~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~ 227 (393)
.... .......... ..+|.+|++... . .+.++.+|+.+|+.
T Consensus 180 ~~~~~~~~~~~~~~~-~~~~~vy~~~~~---------------~-~~~~~a~~~~~G~~ 221 (370)
T COG1520 180 ETPAPLSLSIYGSPA-IASGTVYVGSDG---------------Y-DGILYALNAEDGTL 221 (370)
T ss_pred ecCCccccccccCce-eecceEEEecCC---------------C-cceEEEEEccCCcE
Confidence 1111 1212122222 567889998521 1 33688888876654
No 219
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=94.82 E-value=0.37 Score=47.26 Aligned_cols=197 Identities=14% Similarity=0.101 Sum_probs=103.1
Q ss_pred ccccccCceEEecCc--cCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCc
Q 016199 67 NERMLQGSEKVGYGV--LKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADR 144 (393)
Q Consensus 67 ~~~~l~~~~~l~~g~--~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~ 144 (393)
.+-.+..+.+-..-. -.||..+-+..+|++|.+|...|.|..+|..++. ...-.+.-.....+.+-.+-
T Consensus 112 ~~Vdi~sa~k~f~L~l~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~----L~~Ei~v~Etv~Dv~~LHne----- 182 (545)
T KOG1272|consen 112 ENVDIASATKHFDLSLPEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKK----LHFEINVMETVRDVTFLHNE----- 182 (545)
T ss_pred hhccHHhHHhhccccccccCCeeeeecCCccEEEecCCccceeeeecccce----eeeeeehhhhhhhhhhhcch-----
Confidence 444444444433322 3799999999999999999999999999887664 22111222233444444333
Q ss_pred eEEEEEeCCCceEEEeCCce--EEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeC
Q 016199 145 ITMIVADAYKGLLKISGNST--VLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDP 222 (393)
Q Consensus 145 ~~L~v~~~~~gl~~id~~g~--~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~ 222 (393)
.++....-.-++.+|.+|. +-+... .-++.+.+-|-..|.++. +..|-+-..|-
T Consensus 183 -q~~AVAQK~y~yvYD~~GtElHClk~~------~~v~rLeFLPyHfLL~~~-----------------~~~G~L~Y~DV 238 (545)
T KOG1272|consen 183 -QFFAVAQKKYVYVYDNNGTELHCLKRH------IRVARLEFLPYHFLLVAA-----------------SEAGFLKYQDV 238 (545)
T ss_pred -HHHHhhhhceEEEecCCCcEEeehhhc------Cchhhhcccchhheeeec-----------------ccCCceEEEee
Confidence 3333323344777887773 222211 113345555655566653 22333444455
Q ss_pred CCCeEEE-EecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeec--cCCCCCCeEEECCCCCEEEEEe
Q 016199 223 VTKETKV-LVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIE--TLPGLPDNIRYDGEGHYLIALA 299 (393)
Q Consensus 223 ~t~~~~~-~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~--~l~g~P~~i~~d~~G~lwva~~ 299 (393)
.+|++.. +.++.....-+.-.|-+ .+.-..-.++.+..|.++- .+.++. ...+--.+|++|++|+|.+++.
T Consensus 239 S~GklVa~~~t~~G~~~vm~qNP~N-aVih~GhsnGtVSlWSP~s-----kePLvKiLcH~g~V~siAv~~~G~YMaTtG 312 (545)
T KOG1272|consen 239 STGKLVASIRTGAGRTDVMKQNPYN-AVIHLGHSNGTVSLWSPNS-----KEPLVKILCHRGPVSSIAVDRGGRYMATTG 312 (545)
T ss_pred chhhhhHHHHccCCccchhhcCCcc-ceEEEcCCCceEEecCCCC-----cchHHHHHhcCCCcceEEECCCCcEEeecc
Confidence 5554321 12222222222222333 2223333466777776532 122221 1234457899999999888776
Q ss_pred cCc
Q 016199 300 TEF 302 (393)
Q Consensus 300 ~~r 302 (393)
..|
T Consensus 313 ~Dr 315 (545)
T KOG1272|consen 313 LDR 315 (545)
T ss_pred ccc
Confidence 554
No 220
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=94.80 E-value=2.1 Score=40.12 Aligned_cols=190 Identities=9% Similarity=0.141 Sum_probs=96.9
Q ss_pred CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeec------CCCceeeeEECCCCCCCCceEEEEEeCCCc-
Q 016199 83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWIN------TGGRPLGIAFANSDPDADRITMIVADAYKG- 155 (393)
Q Consensus 83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~------~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g- 155 (393)
..-.+|-+.|.|..|.+|+....+..|+.++-+ -|.. ..+....+...+.| +|||.....|
T Consensus 217 ~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Q------cfvsanPd~qht~ai~~V~Ys~t~------~lYvTaSkDG~ 284 (430)
T KOG0640|consen 217 EPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQ------CFVSANPDDQHTGAITQVRYSSTG------SLYVTASKDGA 284 (430)
T ss_pred ceeeeEeecCCCceEEEecCCCceeEEecccee------EeeecCcccccccceeEEEecCCc------cEEEEeccCCc
Confidence 344568899999999999987777777777532 2221 12345678888999 9999988766
Q ss_pred eEEEeC-Cc--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec
Q 016199 156 LLKISG-NS--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS 232 (393)
Q Consensus 156 l~~id~-~g--~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~ 232 (393)
|-.+|. .+ ++.+....+|. .+....+.++|...++. +.+. .-.++|-...--|..|.-. |....
T Consensus 285 IklwDGVS~rCv~t~~~AH~gs---evcSa~Ftkn~kyiLsS-G~DS-----~vkLWEi~t~R~l~~YtGA-g~tgr--- 351 (430)
T KOG0640|consen 285 IKLWDGVSNRCVRTIGNAHGGS---EVCSAVFTKNGKYILSS-GKDS-----TVKLWEISTGRMLKEYTGA-GTTGR--- 351 (430)
T ss_pred EEeeccccHHHHHHHHhhcCCc---eeeeEEEccCCeEEeec-CCcc-----eeeeeeecCCceEEEEecC-Ccccc---
Confidence 444553 22 33333233332 24456788888766653 2111 1112222211223344322 11000
Q ss_pred CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEec
Q 016199 233 DLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALAT 300 (393)
Q Consensus 233 ~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~ 300 (393)
..+...-.|...++++++-+...+.++.||-.. ..+...+.-+..+-++.|.-++.+-.++.+..
T Consensus 352 -q~~rtqAvFNhtEdyVl~pDEas~slcsWdaRt--adr~~l~slgHn~a~R~i~HSP~~p~FmTcsd 416 (430)
T KOG0640|consen 352 -QKHRTQAVFNHTEDYVLFPDEASNSLCSWDART--ADRVALLSLGHNGAVRWIVHSPVEPAFMTCSD 416 (430)
T ss_pred -hhhhhhhhhcCccceEEccccccCceeeccccc--hhhhhhcccCCCCCceEEEeCCCCCceeeecc
Confidence 011111112333446666666667777777531 11122222233344555555666655555543
No 221
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=94.77 E-value=1 Score=42.25 Aligned_cols=147 Identities=18% Similarity=0.223 Sum_probs=81.6
Q ss_pred ccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCC---CeEEEEe--cCccCCCcEEEcCCCCEEEEE
Q 016199 178 LTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVT---KETKVLV--SDLYFANGVVLSPDQTHLVYC 252 (393)
Q Consensus 178 ~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t---~~~~~~~--~~l~~~ngi~~s~dg~~l~v~ 252 (393)
.+.+++++.||.-+.+-+ +.+.|..|+.+. ++-+.+. -.+..|.-+.|+||-+.++|+
T Consensus 88 ~vt~~~FsSdGK~lat~~-----------------~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~ 150 (420)
T KOG2096|consen 88 EVTDVAFSSDGKKLATIS-----------------GDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVS 150 (420)
T ss_pred ceeeeEEcCCCceeEEEe-----------------CCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEE
Confidence 356889999997666642 222344444322 1111111 124578999999999888777
Q ss_pred eCCCCeEEEEEecCCCCccee---eeeccCCCCC-------CeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhh
Q 016199 253 ETSMRRCRKFYIKGKNAGRVE---KFIETLPGLP-------DNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMV 322 (393)
Q Consensus 253 ~~~~~ri~~~~~~g~~~~~~~---~~~~~l~g~P-------~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~ 322 (393)
--..+.|+.|.+...+.|... +..|++. ++ -+|-+...+.+.+++...
T Consensus 151 ~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~-f~~kh~v~~i~iGiA~~~k~imsas~d--------------------- 208 (420)
T KOG2096|consen 151 VKRGNKLCVYKLVKKTDGSGSHHFVHIDNLE-FERKHQVDIINIGIAGNAKYIMSASLD--------------------- 208 (420)
T ss_pred EccCCEEEEEEeeecccCCCCcccccccccc-cchhcccceEEEeecCCceEEEEecCC---------------------
Confidence 777889999987643333321 1122221 11 234444445455544433
Q ss_pred hhhhCCCCCCCCCceEEEECCCCcEEEEeeCCCCCccEEEEEeCCEEEEEecCC
Q 016199 323 VRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHH 376 (393)
Q Consensus 323 ~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~ 376 (393)
..|+..+.+|+.+.++..........+...+|++...+...
T Consensus 209 -------------t~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~gFT 249 (420)
T KOG2096|consen 209 -------------TKICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFT 249 (420)
T ss_pred -------------CcEEEEecCCceeeeeccccccccceeeCCCCcEEEEecCC
Confidence 34777888888888776544333334455566654444333
No 222
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=94.67 E-value=0.97 Score=40.83 Aligned_cols=165 Identities=16% Similarity=0.105 Sum_probs=80.0
Q ss_pred ccCceEEecCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCC---CCcceeeeeecC-CCceeeeEECCCCCCCCceE
Q 016199 71 LQGSEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDS---PADSLVHNWINT-GGRPLGIAFANSDPDADRIT 146 (393)
Q Consensus 71 l~~~~~l~~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~---~~~~~~~~~~~~-~~~p~gl~~d~~G~~~~~~~ 146 (393)
+..+..++.| ..+=..|+..|+|. ||.-. ++.+++..+... +....-+.+... =++-..|.++++| .
T Consensus 23 ~~~a~~iG~g-w~~~~~i~~~P~g~-lY~I~-~~~lY~~~~~~~~~~~~~~~~~~Ig~g~W~~F~~i~~d~~G------~ 93 (229)
T PF14517_consen 23 SDRAITIGSG-WNNFRDIAAGPNGR-LYAIR-NDGLYRGSPSSSGGNTWDSGSKQIGDGGWNSFKFIFFDPTG------V 93 (229)
T ss_dssp HHHSEEEESS--TT-SEEEE-TTS--EEEEE-TTEEEEES---STT--HHHH-EEEE-S-GGG-SEEEE-TTS-------
T ss_pred cchhhhcCcc-ccccceEEEcCCce-EEEEE-CCceEEecCCccCcccccccCcccccCcccceeEEEecCCc------c
Confidence 5566777775 34556688999985 77655 447888732211 100111222211 0134578999999 9
Q ss_pred EEEEeCCCceEEEeCC--ceEEE----eeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEE
Q 016199 147 MIVADAYKGLLKISGN--STVLL----TDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSF 220 (393)
Q Consensus 147 L~v~~~~~gl~~id~~--g~~~l----~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~ 220 (393)
||..+..+.|++.... +.... ...+.+..-+....|-.+++|.||.-+ +.+++++.
T Consensus 94 LYaV~~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~GvLY~i~------------------~dg~~~~~ 155 (229)
T PF14517_consen 94 LYAVTPDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGVLYAIT------------------PDGRLYRR 155 (229)
T ss_dssp EEEEETT-EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS-EEEEE------------------TTE-EEEE
T ss_pred EEEeccccceeeccCCCccCcchhhccceecccCCCccceEEEeCCCccEEEEc------------------CCCceEEe
Confidence 9988766667777532 11111 111111112223467788999999874 45678887
Q ss_pred e-CCCCe-----EEEE--ecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEe
Q 016199 221 D-PVTKE-----TKVL--VSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYI 264 (393)
Q Consensus 221 d-~~t~~-----~~~~--~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~ 264 (393)
. |.... .+.+ ..+.....-|.++++| .||... .++.|+|+..
T Consensus 156 ~~p~~~~~~W~~~s~~v~~~gw~~~~~i~~~~~g-~L~~V~-~~G~lyr~~~ 205 (229)
T PF14517_consen 156 YRPDGGSDRWLSGSGLVGGGGWDSFHFIFFSPDG-NLWAVK-SNGKLYRGRP 205 (229)
T ss_dssp ---SSTT--HHHH-EEEESSSGGGEEEEEE-TTS--EEEE--ETTEEEEES-
T ss_pred CCCCCCCCccccccceeccCCcccceEEeeCCCC-cEEEEe-cCCEEeccCC
Confidence 3 43221 1112 2233346678888998 677764 5788988764
No 223
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=94.64 E-value=3.2 Score=39.78 Aligned_cols=149 Identities=16% Similarity=0.201 Sum_probs=83.6
Q ss_pred CCCce-EEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeee---EECCCCCCCCceEEEEEeC---C-C
Q 016199 83 KGPED-LLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGI---AFANSDPDADRITMIVADA---Y-K 154 (393)
Q Consensus 83 ~~Pe~-ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl---~~d~~G~~~~~~~L~v~~~---~-~ 154 (393)
..|.. +++-=+-++|.+-..+. |+.+|.++-. ..+.+......|.|+ ....++ =|++-- . +
T Consensus 85 ~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~Mk---lLhTI~t~~~n~~gl~AlS~n~~n-------~ylAyp~s~t~G 153 (391)
T KOG2110|consen 85 FFPTSILAVRMNRKRLVVCLEES-IYIYDIKDMK---LLHTIETTPPNPKGLCALSPNNAN-------CYLAYPGSTTSG 153 (391)
T ss_pred ecCCceEEEEEccceEEEEEccc-EEEEecccce---eehhhhccCCCccceEeeccCCCC-------ceEEecCCCCCc
Confidence 33443 33333445677766554 9999887643 233332222344443 333333 344411 2 2
Q ss_pred ceEEEeCCce---EEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEE-eC-CCCeEEE
Q 016199 155 GLLKISGNST---VLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSF-DP-VTKETKV 229 (393)
Q Consensus 155 gl~~id~~g~---~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~-d~-~t~~~~~ 229 (393)
-|+.+|.... ..+. ...+ ..-.++++++|.+..|- +..|.|.|. +. .+.++..
T Consensus 154 dV~l~d~~nl~~v~~I~-aH~~----~lAalafs~~G~llATA-----------------SeKGTVIRVf~v~~G~kl~e 211 (391)
T KOG2110|consen 154 DVVLFDTINLQPVNTIN-AHKG----PLAALAFSPDGTLLATA-----------------SEKGTVIRVFSVPEGQKLYE 211 (391)
T ss_pred eEEEEEcccceeeeEEE-ecCC----ceeEEEECCCCCEEEEe-----------------ccCceEEEEEEcCCccEeee
Confidence 3777776551 1221 1122 13478999999988774 345677663 43 3344555
Q ss_pred EecCcc--CCCcEEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199 230 LVSDLY--FANGVVLSPDQTHLVYCETSMRRCRKFYIK 265 (393)
Q Consensus 230 ~~~~l~--~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~ 265 (393)
+.++.. ....++|++|+++| .+.+.++.|..|.++
T Consensus 212 FRRG~~~~~IySL~Fs~ds~~L-~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 212 FRRGTYPVSIYSLSFSPDSQFL-AASSNTETVHIFKLE 248 (391)
T ss_pred eeCCceeeEEEEEEECCCCCeE-EEecCCCeEEEEEec
Confidence 666643 34678899999755 555667899999885
No 224
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=94.60 E-value=3.9 Score=41.69 Aligned_cols=233 Identities=13% Similarity=0.156 Sum_probs=116.9
Q ss_pred EecCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCce
Q 016199 77 VGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGL 156 (393)
Q Consensus 77 l~~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl 156 (393)
+..|....-.+|.+++.|..|-.|+.+|.|..|...++. .+..+ ...+....+++.+.+. ..++.+..+..+
T Consensus 395 vyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgR---cvr~~-~~d~~I~~vaw~P~~~----~~vLAvA~~~~~ 466 (733)
T KOG0650|consen 395 VYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGR---CVRTV-QFDSEIRSVAWNPLSD----LCVLAVAVGECV 466 (733)
T ss_pred eEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecce---EEEEE-eecceeEEEEecCCCC----ceeEEEEecCce
Confidence 444544445678899988766666778877777777653 23333 2345678899988761 123333233346
Q ss_pred EEEeCC-ceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCC-----CCeEEEE
Q 016199 157 LKISGN-STVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPV-----TKETKVL 230 (393)
Q Consensus 157 ~~id~~-g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~-----t~~~~~~ 230 (393)
+.+++. |-.+........-...++. ..+++ .+..+... .+.+...
T Consensus 467 ~ivnp~~G~~~e~~~t~ell~~~~~~--~~p~~---------------------------~~~~W~~~~~~e~~~~v~~~ 517 (733)
T KOG0650|consen 467 LIVNPIFGDRLEVGPTKELLASAPNE--SEPDA---------------------------AVVTWSRASLDELEKGVCIV 517 (733)
T ss_pred EEeCccccchhhhcchhhhhhcCCCc--cCCcc---------------------------cceeechhhhhhhccceEEE
Confidence 666542 2000000000000000100 01111 12222111 0011222
Q ss_pred ecCccCCCcEEEcCCCCEEEEE--eCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCC-CEEEEEecCcchhhh
Q 016199 231 VSDLYFANGVVLSPDQTHLVYC--ETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEG-HYLIALATEFSTYWD 307 (393)
Q Consensus 231 ~~~l~~~ngi~~s~dg~~l~v~--~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G-~lwva~~~~r~~~~~ 307 (393)
.......+.+.++.+|+++-+. +..+.+++.+.++..+ ....|- ...|.+-.+.+.+.- .++||+..
T Consensus 518 I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~--sQ~PF~-kskG~vq~v~FHPs~p~lfVaTq~------- 587 (733)
T KOG0650|consen 518 IKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRK--SQSPFR-KSKGLVQRVKFHPSKPYLFVATQR------- 587 (733)
T ss_pred EecCCccceeeeecCCceEEEeccCCCcceEEEEeccccc--ccCchh-hcCCceeEEEecCCCceEEEEecc-------
Confidence 2333445778888999866433 2345688888886322 223332 234566667776653 47777763
Q ss_pred hhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-CCcEEEEeeCCCCCccEE--EEEeCCEEEEEecCCCeEEEEeC
Q 016199 308 LAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-DGKPIAHYYDPEMSLISS--AIKIGDHLYCGSVHHRGILHLDV 384 (393)
Q Consensus 308 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~g~~~~~~~d~~~~~~~~--~~~~~g~Lyigs~~~~~i~~~~~ 384 (393)
.|..+|. +.+++..+.... ..+++ +.+.+++|.+|++ ...+..+|+
T Consensus 588 -----------------------------~vRiYdL~kqelvKkL~tg~-kwiS~msihp~GDnli~gs~-d~k~~WfDl 636 (733)
T KOG0650|consen 588 -----------------------------SVRIYDLSKQELVKKLLTGS-KWISSMSIHPNGDNLILGSY-DKKMCWFDL 636 (733)
T ss_pred -----------------------------ceEEEehhHHHHHHHHhcCC-eeeeeeeecCCCCeEEEecC-CCeeEEEEc
Confidence 3666664 334443333332 22232 3445589999984 457777877
Q ss_pred CCC
Q 016199 385 NQH 387 (393)
Q Consensus 385 ~~~ 387 (393)
+-.
T Consensus 637 dls 639 (733)
T KOG0650|consen 637 DLS 639 (733)
T ss_pred ccC
Confidence 543
No 225
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=94.58 E-value=2.3 Score=40.65 Aligned_cols=185 Identities=16% Similarity=0.132 Sum_probs=100.9
Q ss_pred CccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECC-CCCCCCceEEEEEeCCCceEE
Q 016199 80 GVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFAN-SDPDADRITMIVADAYKGLLK 158 (393)
Q Consensus 80 g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~-~G~~~~~~~L~v~~~~~gl~~ 158 (393)
|.+.+-.++...|.-++|+++.+|..+..||..++. .+..+....+....+.+.+ |+ .++-+..+.-|..
T Consensus 233 GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~---~V~~l~GH~~~V~~V~~~~~dp------qvit~S~D~tvrl 303 (460)
T KOG0285|consen 233 GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA---SVHVLSGHTNPVASVMCQPTDP------QVITGSHDSTVRL 303 (460)
T ss_pred cccceeEEEeccccceeEEecCCcceEEEeeecccc---eEEEecCCCCcceeEEeecCCC------ceEEecCCceEEE
Confidence 455666777777766678888888877778877653 1233322223334454444 55 7888877777777
Q ss_pred EeC-Cc--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeE-EEEecCc
Q 016199 159 ISG-NS--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKET-KVLVSDL 234 (393)
Q Consensus 159 id~-~g--~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~-~~~~~~l 234 (393)
+|. .| +..+... -..+..++..|+-+++.+. + ...+-+++...|.. ..+....
T Consensus 304 WDl~agkt~~tlt~h-----kksvral~lhP~e~~fASa-s-----------------~dnik~w~~p~g~f~~nlsgh~ 360 (460)
T KOG0285|consen 304 WDLRAGKTMITLTHH-----KKSVRALCLHPKENLFASA-S-----------------PDNIKQWKLPEGEFLQNLSGHN 360 (460)
T ss_pred eeeccCceeEeeecc-----cceeeEEecCCchhhhhcc-C-----------------CccceeccCCccchhhcccccc
Confidence 775 34 2223211 1224466777776665542 1 22344555433332 1111112
Q ss_pred cCCCcEEEcCCCCEEEEEeCCCCeEEEEEec-CCCCcceeeeeccCCCCCC---e---EEECCCCCEEEEEec
Q 016199 235 YFANGVVLSPDQTHLVYCETSMRRCRKFYIK-GKNAGRVEKFIETLPGLPD---N---IRYDGEGHYLIALAT 300 (393)
Q Consensus 235 ~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~-g~~~~~~~~~~~~l~g~P~---~---i~~d~~G~lwva~~~ 300 (393)
...|.+++..|| ++++...++.|+.++.+ |.+....+..+ .||.-+ | .++|..|.-.|....
T Consensus 361 ~iintl~~nsD~--v~~~G~dng~~~fwdwksg~nyQ~~~t~v--qpGSl~sEagI~as~fDktg~rlit~ea 429 (460)
T KOG0285|consen 361 AIINTLSVNSDG--VLVSGGDNGSIMFWDWKSGHNYQRGQTIV--QPGSLESEAGIFASCFDKTGSRLITGEA 429 (460)
T ss_pred ceeeeeeeccCc--eEEEcCCceEEEEEecCcCcccccccccc--cCCccccccceeEEeecccCceEEeccC
Confidence 234555555554 88999888899998875 33332222222 233211 2 457777876666553
No 226
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.57 E-value=3.4 Score=37.35 Aligned_cols=141 Identities=11% Similarity=0.094 Sum_probs=80.3
Q ss_pred CceeeeEECCCCCCCCceEEEEEeC-CCceEEEeCC-ceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhhe
Q 016199 128 GRPLGIAFANSDPDADRITMIVADA-YKGLLKISGN-STVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYI 205 (393)
Q Consensus 128 ~~p~gl~~d~~G~~~~~~~L~v~~~-~~gl~~id~~-g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~ 205 (393)
+....+.+..+| +.-++-. ..-+-.+++- |. .+ ..+.|.. .-+-+++...|+.-+.+.
T Consensus 18 gaV~avryN~dG------nY~ltcGsdrtvrLWNp~rg~-li-ktYsghG-~EVlD~~~s~Dnskf~s~----------- 77 (307)
T KOG0316|consen 18 GAVRAVRYNVDG------NYCLTCGSDRTVRLWNPLRGA-LI-KTYSGHG-HEVLDAALSSDNSKFASC----------- 77 (307)
T ss_pred cceEEEEEccCC------CEEEEcCCCceEEeecccccc-ee-eeecCCC-ceeeeccccccccccccC-----------
Confidence 456777888888 6544433 3445555663 31 11 1222211 112244444555433332
Q ss_pred ehhcccCCCcEEEEEeCCCCeEEE-EecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCC
Q 016199 206 LDIFEGKPNGRLLSFDPVTKETKV-LVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPD 284 (393)
Q Consensus 206 ~~~~e~~~~g~l~~~d~~t~~~~~-~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~ 284 (393)
.+...++.||-.||+... +.......|.+.+..+. .++++.+....+..||..........++.+ .-|
T Consensus 78 ------GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQilde----a~D 146 (307)
T KOG0316|consen 78 ------GGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILDE----AKD 146 (307)
T ss_pred ------CCCceEEEEEcccCeeeeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhhh----hcC
Confidence 344568899998887644 44456778999997665 788999999999999985433333333322 234
Q ss_pred e-EEECCCCCEEEEEe
Q 016199 285 N-IRYDGEGHYLIALA 299 (393)
Q Consensus 285 ~-i~~d~~G~lwva~~ 299 (393)
+ ..+|-.++..|+-.
T Consensus 147 ~V~Si~v~~heIvaGS 162 (307)
T KOG0316|consen 147 GVSSIDVAEHEIVAGS 162 (307)
T ss_pred ceeEEEecccEEEeec
Confidence 4 33555666666543
No 227
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=94.56 E-value=3.8 Score=37.76 Aligned_cols=187 Identities=10% Similarity=0.073 Sum_probs=100.4
Q ss_pred EEEecCCCEEEEEecCCeEEEEEc-CCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCceEE
Q 016199 88 LLYDAHSKLIYTGCEDGWIKRVTL-NDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNSTVL 166 (393)
Q Consensus 88 ia~d~~g~~L~~~~~~g~I~~~~~-~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g~~~ 166 (393)
|-+..+|++||....|.....|-. ++.. .-.+....+..-.+..|.+- +.+.-+.++.-+-.+|-..-++
T Consensus 16 iKyN~eGDLlFscaKD~~~~vw~s~nGer----lGty~GHtGavW~~Did~~s-----~~liTGSAD~t~kLWDv~tGk~ 86 (327)
T KOG0643|consen 16 IKYNREGDLLFSCAKDSTPTVWYSLNGER----LGTYDGHTGAVWCCDIDWDS-----KHLITGSADQTAKLWDVETGKQ 86 (327)
T ss_pred EEecCCCcEEEEecCCCCceEEEecCCce----eeeecCCCceEEEEEecCCc-----ceeeeccccceeEEEEcCCCcE
Confidence 557788888887777765444433 4333 44444334555666666654 1344444455555666433122
Q ss_pred EeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCC-------CCe-EEEEecCccCCC
Q 016199 167 LTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPV-------TKE-TKVLVSDLYFAN 238 (393)
Q Consensus 167 l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~-------t~~-~~~~~~~l~~~n 238 (393)
++...-+. .+..+.++.+|++.+...-.. + ...+.|..||.. ..+ +..+...-..++
T Consensus 87 la~~k~~~---~Vk~~~F~~~gn~~l~~tD~~----------m--g~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit 151 (327)
T KOG0643|consen 87 LATWKTNS---PVKRVDFSFGGNLILASTDKQ----------M--GYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKIT 151 (327)
T ss_pred EEEeecCC---eeEEEeeccCCcEEEEEehhh----------c--CcceEEEEEEccCChhhhcccCceEEecCCcccee
Confidence 32221122 234677888887554421110 1 123345555543 222 222333335567
Q ss_pred cEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecC
Q 016199 239 GVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATE 301 (393)
Q Consensus 239 gi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~ 301 (393)
-.-+++-+++|+. .-..+.|.+|+....+ +...-.+....--++++..++..++|.....
T Consensus 152 ~a~Wg~l~~~ii~-Ghe~G~is~~da~~g~--~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~D 211 (327)
T KOG0643|consen 152 SALWGPLGETIIA-GHEDGSISIYDARTGK--ELVDSDEEHSSKINDLQFSRDRTYFITGSKD 211 (327)
T ss_pred eeeecccCCEEEE-ecCCCcEEEEEcccCc--eeeechhhhccccccccccCCcceEEecccC
Confidence 7778898877654 4467899999985321 1100111111235778999999999976544
No 228
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.54 E-value=0.81 Score=44.59 Aligned_cols=122 Identities=18% Similarity=0.197 Sum_probs=59.8
Q ss_pred CCcEEEEEeCCCCeEEEEecCc-cCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCC--CeEEEC
Q 016199 213 PNGRLLSFDPVTKETKVLVSDL-YFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLP--DNIRYD 289 (393)
Q Consensus 213 ~~g~l~~~d~~t~~~~~~~~~l-~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P--~~i~~d 289 (393)
+...+|.+|.++++.+.+.++- ....|..++++.+.+|+.- ...+|.++++++.+ .+.+.+-..++- .....+
T Consensus 58 g~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~-~~~~l~~vdL~T~e---~~~vy~~p~~~~g~gt~v~n 133 (386)
T PF14583_consen 58 GNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVK-NGRSLRRVDLDTLE---ERVVYEVPDDWKGYGTWVAN 133 (386)
T ss_dssp SS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEE-TTTEEEEEETTT-----EEEEEE--TTEEEEEEEEE-
T ss_pred CCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEE-CCCeEEEEECCcCc---EEEEEECCcccccccceeeC
Confidence 4457999999999999887653 2234778889988875543 23689999996532 222221111111 123357
Q ss_pred CCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEE
Q 016199 290 GEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAH 350 (393)
Q Consensus 290 ~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~ 350 (393)
+|++.+++....+. -+..+.++...+++.. ..+...|+.+|.++...+.
T Consensus 134 ~d~t~~~g~e~~~~-d~~~l~~~~~f~e~~~-----------a~p~~~i~~idl~tG~~~~ 182 (386)
T PF14583_consen 134 SDCTKLVGIEISRE-DWKPLTKWKGFREFYE-----------ARPHCRIFTIDLKTGERKV 182 (386)
T ss_dssp TTSSEEEEEEEEGG-G-----SHHHHHHHHH-----------C---EEEEEEETTT--EEE
T ss_pred CCccEEEEEEEeeh-hccCccccHHHHHHHh-----------hCCCceEEEEECCCCceeE
Confidence 88998888754332 2222333334444332 2223468888875444433
No 229
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=94.49 E-value=0.52 Score=50.52 Aligned_cols=174 Identities=12% Similarity=0.068 Sum_probs=95.2
Q ss_pred CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEE-Ee-
Q 016199 83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLK-IS- 160 (393)
Q Consensus 83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~-id- 160 (393)
.---+++|+|++..|-.++.|+.|..|+..+.. ..+.+....+-+-|+.+||-| +.+....+++.++ +.
T Consensus 130 ~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~---~~~vl~~H~s~VKGvs~DP~G------ky~ASqsdDrtikvwrt 200 (942)
T KOG0973|consen 130 SDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFE---LLKVLRGHQSLVKGVSWDPIG------KYFASQSDDRTLKVWRT 200 (942)
T ss_pred CccceeccCCCccEEEEecccceEEEEccccce---eeeeeecccccccceEECCcc------CeeeeecCCceEEEEEc
Confidence 344568999998756556679999999876542 244444445668899999999 7666655555333 33
Q ss_pred -CCc-eEEEeeccCCcc-ccccccEEEcCCCcEEEEeCCCcc--------chhhhe--ehhcccCCCcEEEEEeCCC---
Q 016199 161 -GNS-TVLLTDEAEGQK-FKLTDGVDVADDGMIYFTDASNKY--------YLREYI--LDIFEGKPNGRLLSFDPVT--- 224 (393)
Q Consensus 161 -~~g-~~~l~~~~~g~~-~~~~~~l~~d~dG~l~~td~~~~~--------~~~~~~--~~~~e~~~~g~l~~~d~~t--- 224 (393)
.-| .+.+...++..+ ..+..-+...|||..+.+-.+.+- .++.|- .++..+..--.+.+|+|.=
T Consensus 201 ~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~ 280 (942)
T KOG0973|consen 201 SDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFER 280 (942)
T ss_pred ccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhcc
Confidence 223 233322222111 122334567788865544222111 122332 2233344434456666520
Q ss_pred -----------------------CeEEEEecCc------------cCCCcEEEcCCCCEEEEEeCCCCeEEEEEecC
Q 016199 225 -----------------------KETKVLVSDL------------YFANGVVLSPDQTHLVYCETSMRRCRKFYIKG 266 (393)
Q Consensus 225 -----------------------~~~~~~~~~l------------~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g 266 (393)
+.+.+-.+.. .....++++|||..||++ +.++.|..+..+.
T Consensus 281 ~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~Lfac-S~DGtV~~i~Fee 356 (942)
T KOG0973|consen 281 NNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFAC-SLDGTVALIHFEE 356 (942)
T ss_pred ccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEE-ecCCeEEEEEcch
Confidence 0111111111 124678899999766665 4688888888763
No 230
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=94.30 E-value=1.1 Score=44.71 Aligned_cols=124 Identities=15% Similarity=0.194 Sum_probs=73.5
Q ss_pred cEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCC--eEEEEEecCCCCcceeeeeccCCCCCCeEEECCCC
Q 016199 215 GRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMR--RCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEG 292 (393)
Q Consensus 215 g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~--ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G 292 (393)
.+++.+|.++++...+.+.....-.-+++|||+.|.++...++ .|+.+++.+.. ... +.+..+.-.+=...+||
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~---~~~-Lt~~~gi~~~Ps~spdG 293 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN---LPR-LTNGFGINTSPSWSPDG 293 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc---cee-cccCCccccCccCCCCC
Confidence 4699999988887777664444455679999999988877655 57778876543 111 22333333334567888
Q ss_pred CEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCC-CCccEEEEEeCCEEEE
Q 016199 293 HYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPE-MSLISSAIKIGDHLYC 371 (393)
Q Consensus 293 ~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~-~~~~~~~~~~~g~Lyi 371 (393)
+..+=.. .|. +. -.|+++|.+|+..+.+.... ........+++.++-+
T Consensus 294 ~~ivf~S-dr~------------------------G~------p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~ 342 (425)
T COG0823 294 SKIVFTS-DRG------------------------GR------PQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVF 342 (425)
T ss_pred CEEEEEe-CCC------------------------CC------cceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEE
Confidence 8333221 211 01 14899999988776665433 1212233445555555
Q ss_pred Ee
Q 016199 372 GS 373 (393)
Q Consensus 372 gs 373 (393)
-+
T Consensus 343 ~~ 344 (425)
T COG0823 343 ES 344 (425)
T ss_pred Ee
Confidence 54
No 231
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=94.23 E-value=5.7 Score=38.52 Aligned_cols=50 Identities=14% Similarity=0.236 Sum_probs=34.8
Q ss_pred ceEEEECCCCcEEEEeeCCCCC--ccEEEEEeCCEEEEEecC----CCeEEEEeCC
Q 016199 336 SGVFIVDLDGKPIAHYYDPEMS--LISSAIKIGDHLYCGSVH----HRGILHLDVN 385 (393)
Q Consensus 336 ~~v~~~d~~g~~~~~~~d~~~~--~~~~~~~~~g~Lyigs~~----~~~i~~~~~~ 385 (393)
..|+.++.+|+....+..++.. .+..+.+.++.||+.+.. ...|.+++++
T Consensus 260 ~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 260 RHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD 315 (353)
T ss_dssp EEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT
T ss_pred cEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC
Confidence 5799999999888777766532 234444556899988765 3488888887
No 232
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=94.21 E-value=6 Score=38.70 Aligned_cols=149 Identities=16% Similarity=0.217 Sum_probs=73.0
Q ss_pred cCCCEEEEEe-cCCeEEEEEcCCCCCcceeeeeecCCCceeeeEEC----CCCCCCCceEEEEEeCC----C--ceEEEe
Q 016199 92 AHSKLIYTGC-EDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFA----NSDPDADRITMIVADAY----K--GLLKIS 160 (393)
Q Consensus 92 ~~g~~L~~~~-~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d----~~G~~~~~~~L~v~~~~----~--gl~~id 160 (393)
|... +++++ ..++++.|+++++. +..+. .++++.+.+- -+| .+..|.++... . .+++++
T Consensus 66 p~kS-lIigTdK~~GL~VYdL~Gk~----lq~~~--~Gr~NNVDvrygf~l~g---~~vDlavas~R~~g~n~l~~f~id 135 (381)
T PF02333_consen 66 PAKS-LIIGTDKKGGLYVYDLDGKE----LQSLP--VGRPNNVDVRYGFPLNG---KTVDLAVASDRSDGRNSLRLFRID 135 (381)
T ss_dssp GGG--EEEEEETTTEEEEEETTS-E----EEEE---SS-EEEEEEEEEEEETT---EEEEEEEEEE-CCCT-EEEEEEEE
T ss_pred cccc-eEEEEeCCCCEEEEcCCCcE----EEeec--CCCcceeeeecceecCC---ceEEEEEEecCcCCCCeEEEEEec
Confidence 4444 44554 57899999999876 55553 3667654432 133 01124454322 1 277788
Q ss_pred CC-c-eEEEeeccCC--ccccccccEEE--cC-CCcEEEEeCCCccchhhheehhcccCCCcEEEE--Ee-CCCCeEE-E
Q 016199 161 GN-S-TVLLTDEAEG--QKFKLTDGVDV--AD-DGMIYFTDASNKYYLREYILDIFEGKPNGRLLS--FD-PVTKETK-V 229 (393)
Q Consensus 161 ~~-g-~~~l~~~~~g--~~~~~~~~l~~--d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~--~d-~~t~~~~-~ 229 (393)
++ + ++.+...... ..+.-+.+++. ++ +|.+|+--.. ..|.+.. +. ...+.++ .
T Consensus 136 ~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~----------------k~G~~~Qy~L~~~~~g~v~~~ 199 (381)
T PF02333_consen 136 PDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNG----------------KDGRVEQYELTDDGDGKVSAT 199 (381)
T ss_dssp TTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE----------------TTSEEEEEEEEE-TTSSEEEE
T ss_pred CCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEec----------------CCceEEEEEEEeCCCCcEeeE
Confidence 64 4 4333211100 11222456664 33 5666654211 1233433 32 2233321 1
Q ss_pred EecC---ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCC
Q 016199 230 LVSD---LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGK 267 (393)
Q Consensus 230 ~~~~---l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~ 267 (393)
+.+. -..+-|+.++.....||++|. ...||+|+.+.+
T Consensus 200 lVR~f~~~sQ~EGCVVDDe~g~LYvgEE-~~GIW~y~Aep~ 239 (381)
T PF02333_consen 200 LVREFKVGSQPEGCVVDDETGRLYVGEE-DVGIWRYDAEPE 239 (381)
T ss_dssp EEEEEE-SS-EEEEEEETTTTEEEEEET-TTEEEEEESSCC
T ss_pred EEEEecCCCcceEEEEecccCCEEEecC-ccEEEEEecCCC
Confidence 2222 235788889888789999997 479999998744
No 233
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=94.02 E-value=6.9 Score=38.72 Aligned_cols=98 Identities=11% Similarity=-0.073 Sum_probs=49.7
Q ss_pred cEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCe-EEEEec-CccCCCcEEEcCCCCEEEEEeCCCCe
Q 016199 181 GVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKE-TKVLVS-DLYFANGVVLSPDQTHLVYCETSMRR 258 (393)
Q Consensus 181 ~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~-~~~~~~-~l~~~ngi~~s~dg~~l~v~~~~~~r 258 (393)
++...+||.+++.. ..|.+++-+..+.. .+.+.. .-....++.+.+|+.. |+.. ..+.
T Consensus 243 ~v~~~~dG~~~~vg------------------~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l-~l~g-~~G~ 302 (398)
T PLN00033 243 TVNRSPDGDYVAVS------------------SRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGL-WLLT-RGGG 302 (398)
T ss_pred eEEEcCCCCEEEEE------------------CCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCE-EEEe-CCce
Confidence 45566777666552 23556665444333 233322 2233567778888864 4444 3466
Q ss_pred EEEEEecCCCCcceeeeec-cCC--C-CCCeEEECCCCCEEEEEe
Q 016199 259 CRKFYIKGKNAGRVEKFIE-TLP--G-LPDNIRYDGEGHYLIALA 299 (393)
Q Consensus 259 i~~~~~~g~~~~~~~~~~~-~l~--g-~P~~i~~d~~G~lwva~~ 299 (393)
+++-.-+|. .-+...|.. ..+ + ...++.+.+++.+|++..
T Consensus 303 l~~S~d~G~-~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~ 346 (398)
T PLN00033 303 LYVSKGTGL-TEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGG 346 (398)
T ss_pred EEEecCCCC-cccccceeecccCCCCcceEEEEEcCCCcEEEEEC
Confidence 766543332 111112221 111 1 134466778899998766
No 234
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=94.02 E-value=0.57 Score=47.21 Aligned_cols=153 Identities=16% Similarity=0.188 Sum_probs=88.0
Q ss_pred EEEecCCCEEEEEecCCeEEEEEcCCCCCcceeee---eecCCC-----ceeeeEECCCCCCCCceEEEEEeCCCceEEE
Q 016199 88 LLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHN---WINTGG-----RPLGIAFANSDPDADRITMIVADAYKGLLKI 159 (393)
Q Consensus 88 ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~---~~~~~~-----~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~i 159 (393)
+-+.+..++|-+|+.+|.|-.||+..+..-..+.. +....+ .+..+.|..+| -.+-||+..+.++.+
T Consensus 181 v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g-----L~~aVGts~G~v~iy 255 (703)
T KOG2321|consen 181 VSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG-----LHVAVGTSTGSVLIY 255 (703)
T ss_pred eeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCc-----eeEEeeccCCcEEEE
Confidence 34445555677888899999999876541111111 111111 36789999888 246666666779999
Q ss_pred eCCc-eEEEe-eccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCC
Q 016199 160 SGNS-TVLLT-DEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFA 237 (393)
Q Consensus 160 d~~g-~~~l~-~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ 237 (393)
|... ...+. +.....++...+.+..+....++-.| ...+-.||+.+|+.-.......-.
T Consensus 256 DLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~D-------------------k~~~kiWd~~~Gk~~asiEpt~~l 316 (703)
T KOG2321|consen 256 DLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMD-------------------KRILKIWDECTGKPMASIEPTSDL 316 (703)
T ss_pred EcccCCceeecccCCccceeeecccccCCCceEEecc-------------------hHHhhhcccccCCceeeccccCCc
Confidence 9765 33333 23333333322232222223444443 112445788888776666666668
Q ss_pred CcEEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199 238 NGVVLSPDQTHLVYCETSMRRCRKFYIK 265 (393)
Q Consensus 238 ngi~~s~dg~~l~v~~~~~~ri~~~~~~ 265 (393)
|.+|+-|++..+ +.......+..|.+.
T Consensus 317 ND~C~~p~sGm~-f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 317 NDFCFVPGSGMF-FTANESSKMHTYYIP 343 (703)
T ss_pred CceeeecCCceE-EEecCCCcceeEEcc
Confidence 999999998544 444456777777763
No 235
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.00 E-value=7.1 Score=38.74 Aligned_cols=201 Identities=12% Similarity=0.063 Sum_probs=87.7
Q ss_pred CCEEEEEe-cCCeEEEEEcCCCCC-cceeeeeec-------CCCceeeeEECCCCCCCCceEEEEEeC-------CCceE
Q 016199 94 SKLIYTGC-EDGWIKRVTLNDSPA-DSLVHNWIN-------TGGRPLGIAFANSDPDADRITMIVADA-------YKGLL 157 (393)
Q Consensus 94 g~~L~~~~-~~g~I~~~~~~~~~~-~~~~~~~~~-------~~~~p~gl~~d~~G~~~~~~~L~v~~~-------~~gl~ 157 (393)
-+.|++.. .+++|+.+|..+... ....+.+.. ...+|+-..--++| +++|... .+|++
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G------~imIS~lGd~~G~g~Ggf~ 160 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDG------RIMISALGDADGNGPGGFV 160 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--------EEEEEEEETTS-S--EEE
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCc------cEEEEeccCCCCCCCCcEE
Confidence 34676655 588999999874332 222232221 11357777777889 8888732 24688
Q ss_pred EEeCCceEEEeec-cCCccccccccEEEcCCCcEEEEeCCCccc--hhhhee-hhcccCCCcEEEEEeCCCCeEEEEecC
Q 016199 158 KISGNSTVLLTDE-AEGQKFKLTDGVDVADDGMIYFTDASNKYY--LREYIL-DIFEGKPNGRLLSFDPVTKETKVLVSD 233 (393)
Q Consensus 158 ~id~~g~~~l~~~-~~g~~~~~~~~l~~d~dG~l~~td~~~~~~--~~~~~~-~~~e~~~~g~l~~~d~~t~~~~~~~~~ 233 (393)
.+|.++.++.... .+.....+..++...+..++.++..-.... ...+.. ++..+.-..+|..+|-.+++.....+-
T Consensus 161 llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idL 240 (461)
T PF05694_consen 161 LLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDL 240 (461)
T ss_dssp EE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES
T ss_pred EEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEec
Confidence 8888774333322 222223456688888988888886321110 011111 222333345799999987776543321
Q ss_pred ---ccCCCcEEEc--CCCCEEEEEeCCCCeEEEEEecCCCCcceeeeec------------cC-------CCCCCeEEEC
Q 016199 234 ---LYFANGVVLS--PDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIE------------TL-------PGLPDNIRYD 289 (393)
Q Consensus 234 ---l~~~ngi~~s--~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~------------~l-------~g~P~~i~~d 289 (393)
...|--|.+. |+...=|+.....+.|++|..+.+..=+.+..++ .+ |+++..|.++
T Consensus 241 g~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS 320 (461)
T PF05694_consen 241 GEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS 320 (461)
T ss_dssp -TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-
T ss_pred CCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEc
Confidence 1122233343 4455667877788999999874221111222221 11 4567788888
Q ss_pred CCCC-EEEEEec
Q 016199 290 GEGH-YLIALAT 300 (393)
Q Consensus 290 ~~G~-lwva~~~ 300 (393)
.|.+ +||+++.
T Consensus 321 lDDrfLYvs~W~ 332 (461)
T PF05694_consen 321 LDDRFLYVSNWL 332 (461)
T ss_dssp TTS-EEEEEETT
T ss_pred cCCCEEEEEccc
Confidence 8888 7888874
No 236
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.00 E-value=2.7 Score=41.49 Aligned_cols=146 Identities=16% Similarity=0.131 Sum_probs=84.5
Q ss_pred CCCceEEEecCC-CEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeC
Q 016199 83 KGPEDLLYDAHS-KLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISG 161 (393)
Q Consensus 83 ~~Pe~ia~d~~g-~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~ 161 (393)
..-.+.++.|.. +.+.+|+.||.|..|+...... .+..+ +.+.....+.+-+.| .+++...+..+-.+|.
T Consensus 154 DYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~--~v~el-nhg~pVe~vl~lpsg------s~iasAgGn~vkVWDl 224 (487)
T KOG0310|consen 154 DYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS--RVVEL-NHGCPVESVLALPSG------SLIASAGGNSVKVWDL 224 (487)
T ss_pred ceeEeeccccCCCeEEEecCCCceEEEEEeccCCc--eeEEe-cCCCceeeEEEcCCC------CEEEEcCCCeEEEEEe
Confidence 344556666644 4677888999999998775430 02222 233445678888888 7877755666777786
Q ss_pred C-ceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCC--
Q 016199 162 N-STVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFAN-- 238 (393)
Q Consensus 162 ~-g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~n-- 238 (393)
- |-+.+.... . ....+..+....++.-.++- .-.+.+-.||..+ .+.. ....+|+
T Consensus 225 ~~G~qll~~~~-~-H~KtVTcL~l~s~~~rLlS~-----------------sLD~~VKVfd~t~--~Kvv-~s~~~~~pv 282 (487)
T KOG0310|consen 225 TTGGQLLTSMF-N-HNKTVTCLRLASDSTRLLSG-----------------SLDRHVKVFDTTN--YKVV-HSWKYPGPV 282 (487)
T ss_pred cCCceehhhhh-c-ccceEEEEEeecCCceEeec-----------------ccccceEEEEccc--eEEE-Eeeecccce
Confidence 5 422222111 1 12346678888887433331 3345677787432 2222 2334443
Q ss_pred -cEEEcCCCCEEEEEeCCCCeEE
Q 016199 239 -GVVLSPDQTHLVYCETSMRRCR 260 (393)
Q Consensus 239 -gi~~s~dg~~l~v~~~~~~ri~ 260 (393)
.+++++|++.+++.-+ ++-+.
T Consensus 283 Lsiavs~dd~t~viGms-nGlv~ 304 (487)
T KOG0310|consen 283 LSIAVSPDDQTVVIGMS-NGLVS 304 (487)
T ss_pred eeEEecCCCceEEEecc-cceee
Confidence 5789999988877654 44333
No 237
>PHA02713 hypothetical protein; Provisional
Probab=93.77 E-value=9.7 Score=39.54 Aligned_cols=218 Identities=11% Similarity=0.047 Sum_probs=105.0
Q ss_pred eEEEEEcCCCCCcceeeeeecCCCc--eeeeEECCCCCCCCceEEEEEeCCC-------ceEEEeCCc-e-EEEeeccCC
Q 016199 105 WIKRVTLNDSPADSLVHNWINTGGR--PLGIAFANSDPDADRITMIVADAYK-------GLLKISGNS-T-VLLTDEAEG 173 (393)
Q Consensus 105 ~I~~~~~~~~~~~~~~~~~~~~~~~--p~gl~~d~~G~~~~~~~L~v~~~~~-------gl~~id~~g-~-~~l~~~~~g 173 (393)
.+.+|++..+. +......... ..+++.- +| .||+..... .+.++|+.. . ..+.. ...
T Consensus 273 ~v~~yd~~~~~----W~~l~~mp~~r~~~~~a~l-~~------~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~-m~~ 340 (557)
T PHA02713 273 CILVYNINTME----YSVISTIPNHIINYASAIV-DN------EIIIAGGYNFNNPSLNKVYKINIENKIHVELPP-MIK 340 (557)
T ss_pred CEEEEeCCCCe----EEECCCCCccccceEEEEE-CC------EEEEEcCCCCCCCccceEEEEECCCCeEeeCCC-Ccc
Confidence 46788887765 5554432211 1334443 56 888874421 266777654 1 11111 111
Q ss_pred ccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCC---CcEEEcCCCCEEE
Q 016199 174 QKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFA---NGVVLSPDQTHLV 250 (393)
Q Consensus 174 ~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~---ngi~~s~dg~~l~ 250 (393)
.+.-.++ ..-+|.||+--... .......+.+|||.+++.+.+.. +..+ .+++. -+| .||
T Consensus 341 --~R~~~~~-~~~~g~IYviGG~~------------~~~~~~sve~Ydp~~~~W~~~~~-mp~~r~~~~~~~-~~g-~IY 402 (557)
T PHA02713 341 --NRCRFSL-AVIDDTIYAIGGQN------------GTNVERTIECYTMGDDKWKMLPD-MPIALSSYGMCV-LDQ-YIY 402 (557)
T ss_pred --hhhceeE-EEECCEEEEECCcC------------CCCCCceEEEEECCCCeEEECCC-CCcccccccEEE-ECC-EEE
Confidence 1111122 33478898763210 00123458999999988876543 2211 22222 345 678
Q ss_pred EEeCC-----------------------CCeEEEEEecCCCCcceeeeeccCC--CCCCeEEECCCCCEEEEEecCcchh
Q 016199 251 YCETS-----------------------MRRCRKFYIKGKNAGRVEKFIETLP--GLPDNIRYDGEGHYLIALATEFSTY 305 (393)
Q Consensus 251 v~~~~-----------------------~~ri~~~~~~g~~~~~~~~~~~~l~--g~P~~i~~d~~G~lwva~~~~r~~~ 305 (393)
+.... ...+.+|++..++ -+... .++ ...-+++. -+|.+||........
T Consensus 403 viGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~---W~~v~-~m~~~r~~~~~~~-~~~~IYv~GG~~~~~- 476 (557)
T PHA02713 403 IIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI---WETLP-NFWTGTIRPGVVS-HKDDIYVVCDIKDEK- 476 (557)
T ss_pred EEeCCCcccccccccccccccccccccccceEEEECCCCCe---EeecC-CCCcccccCcEEE-ECCEEEEEeCCCCCC-
Confidence 76532 2357888875432 11111 221 11112332 357888763311000
Q ss_pred hhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCC-cEEEEee-CCCCCccEEEEEeCCEEEEEecCCC--eEEE
Q 016199 306 WDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDG-KPIAHYY-DPEMSLISSAIKIGDHLYCGSVHHR--GILH 381 (393)
Q Consensus 306 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g-~~~~~~~-d~~~~~~~~~~~~~g~Lyigs~~~~--~i~~ 381 (393)
.....+.++|++. +.-.... .+.......+...+|+||+-+-... .+-+
T Consensus 477 ---------------------------~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~ 529 (557)
T PHA02713 477 ---------------------------NVKTCIFRYNTNTYNGWELITTTESRLSALHTILHDNTIMMLHCYESYMLQDT 529 (557)
T ss_pred ---------------------------ccceeEEEecCCCCCCeeEccccCcccccceeEEECCEEEEEeeecceeehhh
Confidence 0012478999986 4443333 2332233455667899998754333 3445
Q ss_pred EeCC
Q 016199 382 LDVN 385 (393)
Q Consensus 382 ~~~~ 385 (393)
||..
T Consensus 530 yd~~ 533 (557)
T PHA02713 530 FNVY 533 (557)
T ss_pred cCcc
Confidence 5543
No 238
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.66 E-value=7.2 Score=37.69 Aligned_cols=88 Identities=15% Similarity=0.106 Sum_probs=58.8
Q ss_pred CCCcEEEEEeCCCCeEEEEecC-c-cCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEEC
Q 016199 212 KPNGRLLSFDPVTKETKVLVSD-L-YFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYD 289 (393)
Q Consensus 212 ~~~g~l~~~d~~t~~~~~~~~~-l-~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d 289 (393)
+..+.|-.||+..++.-+..-+ . .....+++.|+|.++|++++ .+.+..||+.+.+... .+.++..|-+.+|..+
T Consensus 223 T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~-~g~l~~FD~r~~kl~g--~~~kg~tGsirsih~h 299 (412)
T KOG3881|consen 223 TRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT-KGQLAKFDLRGGKLLG--CGLKGITGSIRSIHCH 299 (412)
T ss_pred ecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc-cchhheecccCceeec--cccCCccCCcceEEEc
Confidence 5567899999985543222212 1 22356778899999999886 6789999986543221 2234566778889999
Q ss_pred CCCCEEEEEecCc
Q 016199 290 GEGHYLIALATEF 302 (393)
Q Consensus 290 ~~G~lwva~~~~r 302 (393)
+.+.+...+.-.|
T Consensus 300 p~~~~las~GLDR 312 (412)
T KOG3881|consen 300 PTHPVLASCGLDR 312 (412)
T ss_pred CCCceEEeeccce
Confidence 8888777666443
No 239
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=93.57 E-value=4.7 Score=39.25 Aligned_cols=185 Identities=11% Similarity=0.083 Sum_probs=96.2
Q ss_pred cCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEE
Q 016199 79 YGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLK 158 (393)
Q Consensus 79 ~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~ 158 (393)
.|...+-.++.+|++++.+...++++.+..|+.+...- ..++.........+.|-... .++.-+.+..-|-.
T Consensus 216 aGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~---~~TLsGHtdkVt~ak~~~~~-----~~vVsgs~DRtiK~ 287 (459)
T KOG0288|consen 216 AGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRL---RHTLSGHTDKVTAAKFKLSH-----SRVVSGSADRTIKL 287 (459)
T ss_pred hccCCCcceeeecCCCceEEeecCCCceeeeeccchhh---hhhhcccccceeeehhhccc-----cceeeccccchhhh
Confidence 34445566799999998888888898888888765430 11111111222333332211 02222222222333
Q ss_pred EeCCceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCC
Q 016199 159 ISGNSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFAN 238 (393)
Q Consensus 159 id~~g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~n 238 (393)
.|.... ... ..-.+...+++|+.. +...+++ ...+.|-.||..+..............
T Consensus 288 WDl~k~-~C~--kt~l~~S~cnDI~~~--~~~~~Sg-----------------H~DkkvRfwD~Rs~~~~~sv~~gg~vt 345 (459)
T KOG0288|consen 288 WDLQKA-YCS--KTVLPGSQCNDIVCS--ISDVISG-----------------HFDKKVRFWDIRSADKTRSVPLGGRVT 345 (459)
T ss_pred hhhhhh-hee--ccccccccccceEec--ceeeeec-----------------ccccceEEEeccCCceeeEeecCccee
Confidence 343220 000 001123457787765 3344442 223457778865555444444445678
Q ss_pred cEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCC-----CeEEECCCCCEEEEE
Q 016199 239 GVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLP-----DNIRYDGEGHYLIAL 298 (393)
Q Consensus 239 gi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P-----~~i~~d~~G~lwva~ 298 (393)
.+.++.+|..++.+ +-...+-.+++.+... ...|- -+++- .-++++++|.|..+.
T Consensus 346 Sl~ls~~g~~lLss-sRDdtl~viDlRt~eI--~~~~s--A~g~k~asDwtrvvfSpd~~YvaAG 405 (459)
T KOG0288|consen 346 SLDLSMDGLELLSS-SRDDTLKVIDLRTKEI--RQTFS--AEGFKCASDWTRVVFSPDGSYVAAG 405 (459)
T ss_pred eEeeccCCeEEeee-cCCCceeeeecccccE--EEEee--ccccccccccceeEECCCCceeeec
Confidence 89999999888777 4467788888754321 11121 11121 236788888755543
No 240
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=93.51 E-value=0.57 Score=42.28 Aligned_cols=133 Identities=14% Similarity=0.136 Sum_probs=65.4
Q ss_pred cccccCceEEecCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcc----eeeeeecC-CCceeeeEECCCCCCC
Q 016199 68 ERMLQGSEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADS----LVHNWINT-GGRPLGIAFANSDPDA 142 (393)
Q Consensus 68 ~~~l~~~~~l~~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~----~~~~~~~~-~~~p~gl~~d~~G~~~ 142 (393)
++.+....+|+.+.-..=..|++++.| .||.-..+|.++|.......... ..+.+... -.....+.++++|
T Consensus 66 ~~~~~~~~~Ig~g~W~~F~~i~~d~~G-~LYaV~~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~G--- 141 (229)
T PF14517_consen 66 NTWDSGSKQIGDGGWNSFKFIFFDPTG-VLYAVTPDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNG--- 141 (229)
T ss_dssp --HHHH-EEEE-S-GGG-SEEEE-TTS--EEEEETT-EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS---
T ss_pred ccccccCcccccCcccceeEEEecCCc-cEEEeccccceeeccCCCccCcchhhccceecccCCCccceEEEeCCCc---
Confidence 444566788888822222389999998 59998999999887654332110 01112111 1236778899999
Q ss_pred CceEEEEEeCCCceEEE-eCCc-eEEEe---eccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEE
Q 016199 143 DRITMIVADAYKGLLKI-SGNS-TVLLT---DEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRL 217 (393)
Q Consensus 143 ~~~~L~v~~~~~gl~~i-d~~g-~~~l~---~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l 217 (393)
.||+-+..+.+++. .+++ ..... ..+.+......+-|...++|+||..+ ..|.|
T Consensus 142 ---vLY~i~~dg~~~~~~~p~~~~~~W~~~s~~v~~~gw~~~~~i~~~~~g~L~~V~------------------~~G~l 200 (229)
T PF14517_consen 142 ---VLYAITPDGRLYRRYRPDGGSDRWLSGSGLVGGGGWDSFHFIFFSPDGNLWAVK------------------SNGKL 200 (229)
T ss_dssp ----EEEEETTE-EEEE---SSTT--HHHH-EEEESSSGGGEEEEEE-TTS-EEEE-------------------ETTEE
T ss_pred ---cEEEEcCCCceEEeCCCCCCCCccccccceeccCCcccceEEeeCCCCcEEEEe------------------cCCEE
Confidence 89988755447766 3332 11110 01111122224567788999999873 35789
Q ss_pred EEEeCCCC
Q 016199 218 LSFDPVTK 225 (393)
Q Consensus 218 ~~~d~~t~ 225 (393)
||+.+.+.
T Consensus 201 yr~~~p~~ 208 (229)
T PF14517_consen 201 YRGRPPQN 208 (229)
T ss_dssp EEES---S
T ss_pred eccCCccc
Confidence 99987653
No 241
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=93.50 E-value=0.35 Score=30.69 Aligned_cols=41 Identities=20% Similarity=0.345 Sum_probs=29.3
Q ss_pred cCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeecCCCceeeeEEC
Q 016199 92 AHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFA 136 (393)
Q Consensus 92 ~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d 136 (393)
++++.||++.. ++.|..++..+.. .......+..|.+|+++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~----~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNK----VIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCe----EEEEEECCCCCceEEeC
Confidence 46778999886 6689999987654 33333456778888874
No 242
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=93.40 E-value=5.1 Score=37.71 Aligned_cols=151 Identities=11% Similarity=0.069 Sum_probs=79.7
Q ss_pred CceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceE-EEEEeCCCceEEEeCCc
Q 016199 85 PEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRIT-MIVADAYKGLLKISGNS 163 (393)
Q Consensus 85 Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~-L~v~~~~~gl~~id~~g 163 (393)
-.++++.|.|+....-..|+.+..||+-.+. .....+....+.-+.+++.| . +++. ...+|-.+..+.
T Consensus 130 Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr----~a~v~~L~~~at~v~w~~~G------d~F~v~-~~~~i~i~q~d~ 198 (362)
T KOG0294|consen 130 VTDLSIHPSGKLALSVGGDQVLRTWNLVRGR----VAFVLNLKNKATLVSWSPQG------DHFVVS-GRNKIDIYQLDN 198 (362)
T ss_pred cceeEecCCCceEEEEcCCceeeeehhhcCc----cceeeccCCcceeeEEcCCC------CEEEEE-eccEEEEEeccc
Confidence 4567788877744433446666667765543 22223334456668888888 5 4444 456655554433
Q ss_pred eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeE-EEEecCccCCCcEE-
Q 016199 164 TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKET-KVLVSDLYFANGVV- 241 (393)
Q Consensus 164 ~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~-~~~~~~l~~~ngi~- 241 (393)
..++. ..... ..+..+.+...+.+.++ ..++.+..+|.+.... ..+...-...-++.
T Consensus 199 A~v~~-~i~~~--~r~l~~~~l~~~~L~vG------------------~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~ 257 (362)
T KOG0294|consen 199 ASVFR-EIENP--KRILCATFLDGSELLVG------------------GDNEWISLKDTDSDTPLTEFLAHENRVKDIAS 257 (362)
T ss_pred HhHhh-hhhcc--ccceeeeecCCceEEEe------------------cCCceEEEeccCCCccceeeecchhheeeeEE
Confidence 11111 00000 11234455555667666 2334566677654322 11222223344555
Q ss_pred EcCCCCEEEEEeCCCCeEEEEEecCC
Q 016199 242 LSPDQTHLVYCETSMRRCRKFYIKGK 267 (393)
Q Consensus 242 ~s~dg~~l~v~~~~~~ri~~~~~~g~ 267 (393)
+......++++.+..|.|..|+++-+
T Consensus 258 ~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 258 YTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EecCCceEEEEeccCceEEEEEcccc
Confidence 33223367888888999999988754
No 243
>smart00284 OLF Olfactomedin-like domains.
Probab=93.18 E-value=7 Score=36.09 Aligned_cols=149 Identities=14% Similarity=0.188 Sum_probs=82.4
Q ss_pred cCCCceEEEecCCCEEEEE-ecCCeEEEEEcCCCCCcceeeeeecC--------------CCceeeeEECCCCCCCCceE
Q 016199 82 LKGPEDLLYDAHSKLIYTG-CEDGWIKRVTLNDSPADSLVHNWINT--------------GGRPLGIAFANSDPDADRIT 146 (393)
Q Consensus 82 ~~~Pe~ia~d~~g~~L~~~-~~~g~I~~~~~~~~~~~~~~~~~~~~--------------~~~p~gl~~d~~G~~~~~~~ 146 (393)
..|.-.+++. |. ||.- .....|++++..++. +...... +..-..++.|.+|
T Consensus 74 ~~GtG~VVYn--gs-lYY~~~~s~~iiKydL~t~~----v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~G------- 139 (255)
T smart00284 74 GQGTGVVVYN--GS-LYFNKFNSHDICRFDLTTET----YQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENG------- 139 (255)
T ss_pred cccccEEEEC--ce-EEEEecCCccEEEEECCCCc----EEEEEecCccccccccccccCCCccEEEEEcCCc-------
Confidence 3555556663 44 5442 234579999998875 3322111 0112478889988
Q ss_pred EEEEeC---CCc---eEEEeCCceEE---EeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcE-
Q 016199 147 MIVADA---YKG---LLKISGNSTVL---LTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGR- 216 (393)
Q Consensus 147 L~v~~~---~~g---l~~id~~g~~~---l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~- 216 (393)
|||--+ ..| |-++|++.+++ +......... .+. +---|.||++++.. ....+
T Consensus 140 LWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T~~~k~sa--~na--FmvCGvLY~~~s~~--------------~~~~~I 201 (255)
T smart00284 140 LWVIYATEQNAGKIVISKLNPATLTIENTWITTYNKRSA--SNA--FMICGILYVTRSLG--------------SKGEKV 201 (255)
T ss_pred eEEEEeccCCCCCEEEEeeCcccceEEEEEEcCCCcccc--ccc--EEEeeEEEEEccCC--------------CCCcEE
Confidence 887622 223 34678876322 2222111111 122 22358899997422 12223
Q ss_pred EEEEeCCCCeEEEEe----cCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEe
Q 016199 217 LLSFDPVTKETKVLV----SDLYFANGVVLSPDQTHLVYCETSMRRCRKFYI 264 (393)
Q Consensus 217 l~~~d~~t~~~~~~~----~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~ 264 (393)
-+.||..+++...+. .......-+...|..+.||+-+. +.+..|++
T Consensus 202 ~yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~d~~LY~wdn--g~~l~Y~v 251 (255)
T smart00284 202 FYAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDRKLYAWNN--GHLVHYDI 251 (255)
T ss_pred EEEEECCCCccceeeeeeccccccceeceeCCCCCeEEEEeC--CeEEEEEE
Confidence 567898876543321 11233445778888889999875 67888876
No 244
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=92.89 E-value=8.3 Score=36.15 Aligned_cols=188 Identities=16% Similarity=0.246 Sum_probs=97.1
Q ss_pred ceEEecCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC
Q 016199 74 SEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY 153 (393)
Q Consensus 74 ~~~l~~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~ 153 (393)
...++.+. .+-.+|......+.+..|+.|+.|..||+.... ....+ ..+.....+.... . +|.||...
T Consensus 87 ~~~igth~-~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~---~~~~~-d~~kkVy~~~v~g-~------~LvVg~~~ 154 (323)
T KOG1036|consen 87 EDQIGTHD-EGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV---VVGTF-DQGKKVYCMDVSG-N------RLVVGTSD 154 (323)
T ss_pred ceeeccCC-CceEEEEeeccCCeEEEcccCccEEEEeccccc---ccccc-ccCceEEEEeccC-C------EEEEeecC
Confidence 34444442 445566666544557788889999999987432 01122 2234455555543 2 79998888
Q ss_pred CceEEEeCCc-eEEEeeccCCccc-cccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEE--EeCC----CC
Q 016199 154 KGLLKISGNS-TVLLTDEAEGQKF-KLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLS--FDPV----TK 225 (393)
Q Consensus 154 ~gl~~id~~g-~~~l~~~~~g~~~-~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~--~d~~----t~ 225 (393)
..+..+|... ...+ ......+ ..+..|+.-|++.=|+..+ -.|||.. +|+. .+
T Consensus 155 r~v~iyDLRn~~~~~--q~reS~lkyqtR~v~~~pn~eGy~~sS-----------------ieGRVavE~~d~s~~~~sk 215 (323)
T KOG1036|consen 155 RKVLIYDLRNLDEPF--QRRESSLKYQTRCVALVPNGEGYVVSS-----------------IEGRVAVEYFDDSEEAQSK 215 (323)
T ss_pred ceEEEEEcccccchh--hhccccceeEEEEEEEecCCCceEEEe-----------------ecceEEEEccCCchHHhhh
Confidence 8888888644 1111 0000111 1133455555444344421 1233332 2221 01
Q ss_pred eE----EEE-ec--C-ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCe---EEECCCCCE
Q 016199 226 ET----KVL-VS--D-LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDN---IRYDGEGHY 294 (393)
Q Consensus 226 ~~----~~~-~~--~-l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~---i~~d~~G~l 294 (393)
+. ... .. . ....|.|+|+|--.+ +++.-..+-|.+|++...| +.. ++..++.+ ++++.+|..
T Consensus 216 kyaFkCHr~~~~~~~~~yPVNai~Fhp~~~t-faTgGsDG~V~~Wd~~~rK--rl~----q~~~~~~SI~slsfs~dG~~ 288 (323)
T KOG1036|consen 216 KYAFKCHRLSEKDTEIIYPVNAIAFHPIHGT-FATGGSDGIVNIWDLFNRK--RLK----QLAKYETSISSLSFSMDGSL 288 (323)
T ss_pred ceeEEeeecccCCceEEEEeceeEeccccce-EEecCCCceEEEccCcchh--hhh----hccCCCCceEEEEeccCCCe
Confidence 10 000 01 1 234699999987544 4666667888888875332 122 34445554 567889985
Q ss_pred E-EEEe
Q 016199 295 L-IALA 299 (393)
Q Consensus 295 w-va~~ 299 (393)
. ||..
T Consensus 289 LAia~s 294 (323)
T KOG1036|consen 289 LAIASS 294 (323)
T ss_pred EEEEec
Confidence 4 5543
No 245
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=92.81 E-value=9.5 Score=36.65 Aligned_cols=146 Identities=12% Similarity=0.205 Sum_probs=80.4
Q ss_pred ceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCceEEEeeccCCccccccccE-EEcCC-CcEEEEeCCCccchhhhee
Q 016199 129 RPLGIAFANSDPDADRITMIVADAYKGLLKISGNSTVLLTDEAEGQKFKLTDGV-DVADD-GMIYFTDASNKYYLREYIL 206 (393)
Q Consensus 129 ~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g~~~l~~~~~g~~~~~~~~l-~~d~d-G~l~~td~~~~~~~~~~~~ 206 (393)
..+.+.+.++ +|.|+-. ..|+.+|.+.++.+.+ .+..+ ..+.++ +..++ ++-|++=.+.
T Consensus 89 ~IL~VrmNr~-------RLvV~Le-e~IyIydI~~MklLhT-I~t~~-~n~~gl~AlS~n~~n~ylAyp~s--------- 149 (391)
T KOG2110|consen 89 SILAVRMNRK-------RLVVCLE-ESIYIYDIKDMKLLHT-IETTP-PNPKGLCALSPNNANCYLAYPGS--------- 149 (391)
T ss_pred ceEEEEEccc-------eEEEEEc-ccEEEEecccceeehh-hhccC-CCccceEeeccCCCCceEEecCC---------
Confidence 3466666654 7988854 4499999877444432 22111 122333 34443 3455552211
Q ss_pred hhcccCCCcEEEEEeCCCCeEEE-EecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccC-CCCCC
Q 016199 207 DIFEGKPNGRLLSFDPVTKETKV-LVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETL-PGLPD 284 (393)
Q Consensus 207 ~~~e~~~~g~l~~~d~~t~~~~~-~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l-~g~P~ 284 (393)
...|.|+.||..+=+... +...-.....++|++|| .++.+.+..|+|.|...-.+ ......|-.+. +..--
T Consensus 150 -----~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G-~llATASeKGTVIRVf~v~~-G~kl~eFRRG~~~~~Iy 222 (391)
T KOG2110|consen 150 -----TTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDG-TLLATASEKGTVIRVFSVPE-GQKLYEFRRGTYPVSIY 222 (391)
T ss_pred -----CCCceEEEEEcccceeeeEEEecCCceeEEEECCCC-CEEEEeccCceEEEEEEcCC-ccEeeeeeCCceeeEEE
Confidence 346789999976433222 22223345679999999 57788888898887553211 11122232221 11123
Q ss_pred eEEECCCCCEEEEEec
Q 016199 285 NIRYDGEGHYLIALAT 300 (393)
Q Consensus 285 ~i~~d~~G~lwva~~~ 300 (393)
.+++++++.+..+...
T Consensus 223 SL~Fs~ds~~L~~sS~ 238 (391)
T KOG2110|consen 223 SLSFSPDSQFLAASSN 238 (391)
T ss_pred EEEECCCCCeEEEecC
Confidence 4678999997776543
No 246
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=92.79 E-value=15 Score=38.98 Aligned_cols=153 Identities=13% Similarity=0.122 Sum_probs=84.2
Q ss_pred ceEEEecCCCEEEEEecCCeEEEEEcCCCCCcce---eeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCC
Q 016199 86 EDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSL---VHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGN 162 (393)
Q Consensus 86 e~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~---~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~ 162 (393)
.+.+++++++.+-++..+|+|..|.--+..+++. .-+|- .....+++|..+| ..||-|..+.-+.++...
T Consensus 209 t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH--~~~V~~L~fS~~G-----~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 209 TCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWH--HDEVNSLSFSSDG-----AYLLSGGREGVLVLWQLE 281 (792)
T ss_pred eeEEeccccceEEEeccCCcEEEEeccccccccccceEEEec--ccccceeEEecCC-----ceEeecccceEEEEEeec
Confidence 3477889998777777899998887544121110 11221 2356789999999 145555333334455443
Q ss_pred c-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE------------
Q 016199 163 S-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV------------ 229 (393)
Q Consensus 163 g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~------------ 229 (393)
. .+.+...... + +-++.+.+|+++|..... ...+..+...+-+...
T Consensus 282 T~~kqfLPRLgs-~---I~~i~vS~ds~~~sl~~~-----------------DNqI~li~~~dl~~k~tIsgi~~~~~~~ 340 (792)
T KOG1963|consen 282 TGKKQFLPRLGS-P---ILHIVVSPDSDLYSLVLE-----------------DNQIHLIKASDLEIKSTISGIKPPTPST 340 (792)
T ss_pred CCCcccccccCC-e---eEEEEEcCCCCeEEEEec-----------------CceEEEEeccchhhhhhccCccCCCccc
Confidence 3 2222222222 2 347889999988865421 1223333221111110
Q ss_pred EecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCC
Q 016199 230 LVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGK 267 (393)
Q Consensus 230 ~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~ 267 (393)
-.....++.+++++|.-+.+.+ ....+.|..|++-.+
T Consensus 341 k~~~~~l~t~~~idpr~~~~vl-n~~~g~vQ~ydl~td 377 (792)
T KOG1963|consen 341 KTRPQSLTTGVSIDPRTNSLVL-NGHPGHVQFYDLYTD 377 (792)
T ss_pred cccccccceeEEEcCCCCceee-cCCCceEEEEecccc
Confidence 0112456788999996544544 345789999998654
No 247
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=92.77 E-value=8.9 Score=36.22 Aligned_cols=160 Identities=15% Similarity=0.055 Sum_probs=90.9
Q ss_pred EEEecCCeEEEEEcCCCCCc--ceeeeeec--CCCceeeeEECCCCCCCCceEEEEEeCCCc-eEEEeCCceE-EEeecc
Q 016199 98 YTGCEDGWIKRVTLNDSPAD--SLVHNWIN--TGGRPLGIAFANSDPDADRITMIVADAYKG-LLKISGNSTV-LLTDEA 171 (393)
Q Consensus 98 ~~~~~~g~I~~~~~~~~~~~--~~~~~~~~--~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g-l~~id~~g~~-~l~~~~ 171 (393)
.+.+.+|.|.-|++.-.... ..+..+.+ .+..-.|+++...+ ..+.||.++...+ |-.+|.+-.+ .+....
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~---~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F 180 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTG---GGDYLYAANFRQGRIDVFKGSFRPPPLPGSF 180 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecC---CCceEEEeccCCCceEEecCccccccCCCCc
Confidence 45667888888876433210 00222211 12224577766331 0128999988654 5555543211 111111
Q ss_pred --CCccc-cccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC--ccCCCcEEEcCCC
Q 016199 172 --EGQKF-KLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD--LYFANGVVLSPDQ 246 (393)
Q Consensus 172 --~g~~~-~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~--l~~~ngi~~s~dg 246 (393)
...+. ..|..|.. -.|+||++=+.++-.. ++-..+.+.|-|-.||+.+.-++++.++ |.-|.|+++.|-+
T Consensus 181 ~DP~iPagyAPFnIqn-ig~~lyVtYA~qd~~~----~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~ 255 (336)
T TIGR03118 181 IDPALPAGYAPFNVQN-LGGTLYVTYAQQDADR----NDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPES 255 (336)
T ss_pred cCCCCCCCCCCcceEE-ECCeEEEEEEecCCcc----cccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhh
Confidence 11121 22445532 2579999843322111 2223345677899999987777777654 7889999997642
Q ss_pred -----CEEEEEeCCCCeEEEEEec
Q 016199 247 -----THLVYCETSMRRCRKFYIK 265 (393)
Q Consensus 247 -----~~l~v~~~~~~ri~~~~~~ 265 (393)
..|+|.+.+.++|..||..
T Consensus 256 FG~~sg~lLVGNFGDG~InaFD~~ 279 (336)
T TIGR03118 256 FGSLSGALLVGNFGDGTINAYDPQ 279 (336)
T ss_pred hCCCCCCeEEeecCCceeEEecCC
Confidence 2688999999999999974
No 248
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=92.59 E-value=0.62 Score=29.52 Aligned_cols=42 Identities=19% Similarity=0.231 Sum_probs=28.9
Q ss_pred CCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEEC
Q 016199 244 PDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYD 289 (393)
Q Consensus 244 ~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d 289 (393)
||++.+|+++...+.|..++... +.....+ .....|.+++++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~---~~~~~~i-~vg~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTAT---NKVIATI-PVGGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCC---CeEEEEE-ECCCCCceEEeC
Confidence 57889999999999999999742 2222222 123468888764
No 249
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=92.55 E-value=9.1 Score=35.83 Aligned_cols=115 Identities=12% Similarity=0.085 Sum_probs=78.8
Q ss_pred CCceeeeEECCCCCCCCceEEEEEeC-CCceEEEeCCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhh
Q 016199 127 GGRPLGIAFANSDPDADRITMIVADA-YKGLLKISGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREY 204 (393)
Q Consensus 127 ~~~p~gl~~d~~G~~~~~~~L~v~~~-~~gl~~id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~ 204 (393)
.+..+-+.|+|+| ..++... ++.|+.++..| -+-.. ...|.. ..+-++...+||+..++.
T Consensus 47 ~geI~~~~F~P~g------s~~aSgG~Dr~I~LWnv~gdceN~~-~lkgHs-gAVM~l~~~~d~s~i~S~---------- 108 (338)
T KOG0265|consen 47 KGEIYTIKFHPDG------SCFASGGSDRAIVLWNVYGDCENFW-VLKGHS-GAVMELHGMRDGSHILSC---------- 108 (338)
T ss_pred cceEEEEEECCCC------CeEeecCCcceEEEEecccccccee-eecccc-ceeEeeeeccCCCEEEEe----------
Confidence 4567788999999 7766644 45577777555 11111 011222 345578888999888875
Q ss_pred eehhcccCCCcEEEEEeCCCCeEEE-EecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecC
Q 016199 205 ILDIFEGKPNGRLLSFDPVTKETKV-LVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKG 266 (393)
Q Consensus 205 ~~~~~e~~~~g~l~~~d~~t~~~~~-~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g 266 (393)
....+|..+|..+|+... ......+.|.++....|-.++.+.+..+.+..||...
T Consensus 109 -------gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~ 164 (338)
T KOG0265|consen 109 -------GTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK 164 (338)
T ss_pred -------cCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecc
Confidence 334589999999887544 3445667788877777778888888889999999863
No 250
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.43 E-value=2.7 Score=40.51 Aligned_cols=102 Identities=9% Similarity=-0.053 Sum_probs=64.7
Q ss_pred CCceEEEecC--CCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeC
Q 016199 84 GPEDLLYDAH--SKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISG 161 (393)
Q Consensus 84 ~Pe~ia~d~~--g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~ 161 (393)
++.++.|-+. ...+.++++-+.+..||+..+.-+ +..+.-.......+...++| +.+|+|+....+..+|.
T Consensus 204 W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRP--V~~fd~~E~~is~~~l~p~g-----n~Iy~gn~~g~l~~FD~ 276 (412)
T KOG3881|consen 204 WITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRP--VAQFDFLENPISSTGLTPSG-----NFIYTGNTKGQLAKFDL 276 (412)
T ss_pred eeccceecCCCCCceEEEEecceeEEEecCcccCcc--eeEeccccCcceeeeecCCC-----cEEEEecccchhheecc
Confidence 4555666554 455778888888888887743211 33443323445677888888 36899988778999998
Q ss_pred CceEEEeeccCCccccccccEEEcCCCcEEEE
Q 016199 162 NSTVLLTDEAEGQKFKLTDGVDVADDGMIYFT 193 (393)
Q Consensus 162 ~g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~t 193 (393)
.+...+.....|.. ..+.+|..++.+.+...
T Consensus 277 r~~kl~g~~~kg~t-Gsirsih~hp~~~~las 307 (412)
T KOG3881|consen 277 RGGKLLGCGLKGIT-GSIRSIHCHPTHPVLAS 307 (412)
T ss_pred cCceeeccccCCcc-CCcceEEEcCCCceEEe
Confidence 76333332233332 34668888888766555
No 251
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=92.42 E-value=0.17 Score=28.39 Aligned_cols=16 Identities=25% Similarity=0.283 Sum_probs=12.6
Q ss_pred CeEEECCCCCEEEEEe
Q 016199 284 DNIRYDGEGHYLIALA 299 (393)
Q Consensus 284 ~~i~~d~~G~lwva~~ 299 (393)
..|..|++|++||++.
T Consensus 8 ~~i~~D~~G~lWigT~ 23 (24)
T PF07494_consen 8 YSIYEDSDGNLWIGTY 23 (24)
T ss_dssp EEEEE-TTSCEEEEET
T ss_pred EEEEEcCCcCEEEEeC
Confidence 3578899999999975
No 252
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=92.41 E-value=5.2 Score=38.50 Aligned_cols=161 Identities=9% Similarity=0.122 Sum_probs=103.1
Q ss_pred cCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeee--------------------c---CCCceeeeEE
Q 016199 79 YGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWI--------------------N---TGGRPLGIAF 135 (393)
Q Consensus 79 ~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~--------------------~---~~~~p~gl~~ 135 (393)
.|.-..-+++.++++|.++..|+.|..|..|+......+ ..+... . .......+.+
T Consensus 190 ~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~-~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w 268 (423)
T KOG0313|consen 190 RGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEED-ELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVW 268 (423)
T ss_pred cccccceeEEEecCCCCeEEeecccceeeecccCCCccc-cccccchhhhhhhhhhhcccccCceEEecccccceeeEEE
Confidence 365566788999999998888888988888872211100 011110 0 0112456777
Q ss_pred CCCCCCCCceEEEEEeCCCceEEEeCCceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCc
Q 016199 136 ANSDPDADRITMIVADAYKGLLKISGNSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNG 215 (393)
Q Consensus 136 d~~G~~~~~~~L~v~~~~~gl~~id~~g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g 215 (393)
.+.+ .+|-+.+++-|...|............+.. .+.+...+.-++.++-.+ ..
T Consensus 269 ~d~~------v~yS~SwDHTIk~WDletg~~~~~~~~~ks---l~~i~~~~~~~Ll~~gss-----------------dr 322 (423)
T KOG0313|consen 269 SDAT------VIYSVSWDHTIKVWDLETGGLKSTLTTNKS---LNCISYSPLSKLLASGSS-----------------DR 322 (423)
T ss_pred cCCC------ceEeecccceEEEEEeecccceeeeecCcc---eeEeecccccceeeecCC-----------------CC
Confidence 7777 889988888888888643111111122222 357777777778777322 22
Q ss_pred EEEEEeCCCCeEEEE----ecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecC
Q 016199 216 RLLSFDPVTKETKVL----VSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKG 266 (393)
Q Consensus 216 ~l~~~d~~t~~~~~~----~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g 266 (393)
.+..|||.++.-... .....+..++..+|-..+.+++.+..+.+-.+|+..
T Consensus 323 ~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS 377 (423)
T KOG0313|consen 323 HIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS 377 (423)
T ss_pred ceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEecc
Confidence 356689987654332 333456788999999999999999999999999853
No 253
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=92.35 E-value=4.6 Score=38.21 Aligned_cols=149 Identities=9% Similarity=-0.001 Sum_probs=77.4
Q ss_pred cCCCEEEEEe-cCCeEEEEEcCCCCCcceeeeeecC--CCceeeeEECCCCCCCCceEEEEEeCCCceEEEeC--Cc--e
Q 016199 92 AHSKLIYTGC-EDGWIKRVTLNDSPADSLVHNWINT--GGRPLGIAFANSDPDADRITMIVADAYKGLLKISG--NS--T 164 (393)
Q Consensus 92 ~~g~~L~~~~-~~g~I~~~~~~~~~~~~~~~~~~~~--~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~--~g--~ 164 (393)
|+.. ||..+ .+.-|..|+.-++...-....+.+. -...+.++|.+|| ..++|...+-|..+|. -| -
T Consensus 121 P~t~-l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DG------eqlfaGykrcirvFdt~RpGr~c 193 (406)
T KOG2919|consen 121 PSTN-LFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDG------EQLFAGYKRCIRVFDTSRPGRDC 193 (406)
T ss_pred Cccc-eeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCC------CeEeecccceEEEeeccCCCCCC
Confidence 4443 44443 3555777776554411111112111 1235789999999 6555534555666664 23 1
Q ss_pred EEEe---eccCCccccccccEEEcCCC-cEE-EEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCc
Q 016199 165 VLLT---DEAEGQKFKLTDGVDVADDG-MIY-FTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANG 239 (393)
Q Consensus 165 ~~l~---~~~~g~~~~~~~~l~~d~dG-~l~-~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ng 239 (393)
.+.. ....|.. ..+..+++.|-. .++ ++.-+ ..-+||+.|.. +-+..+-..-.....
T Consensus 194 ~vy~t~~~~k~gq~-giisc~a~sP~~~~~~a~gsY~----------------q~~giy~~~~~-~pl~llggh~gGvTh 255 (406)
T KOG2919|consen 194 PVYTTVTKGKFGQK-GIISCFAFSPMDSKTLAVGSYG----------------QRVGIYNDDGR-RPLQLLGGHGGGVTH 255 (406)
T ss_pred cchhhhhccccccc-ceeeeeeccCCCCcceeeeccc----------------ceeeeEecCCC-CceeeecccCCCeee
Confidence 2221 1112211 123345666643 233 33211 12246665532 223333222334555
Q ss_pred EEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199 240 VVLSPDQTHLVYCETSMRRCRKFYIK 265 (393)
Q Consensus 240 i~~s~dg~~l~v~~~~~~ri~~~~~~ 265 (393)
+.+.+||+.+|...+....|..+|+.
T Consensus 256 L~~~edGn~lfsGaRk~dkIl~WDiR 281 (406)
T KOG2919|consen 256 LQWCEDGNKLFSGARKDDKILCWDIR 281 (406)
T ss_pred EEeccCcCeecccccCCCeEEEEeeh
Confidence 77899999999999989999999985
No 254
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=92.33 E-value=0.59 Score=44.54 Aligned_cols=147 Identities=13% Similarity=0.115 Sum_probs=82.8
Q ss_pred EEEecCCCEEEEEe-cCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEE-eCCCceEEEeCCc-e
Q 016199 88 LLYDAHSKLIYTGC-EDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVA-DAYKGLLKISGNS-T 164 (393)
Q Consensus 88 ia~d~~g~~L~~~~-~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~-~~~~gl~~id~~g-~ 164 (393)
+-+.|-...+..++ .|+.|+.||..... .++.+ ....++++|++.|++ ..+++ +-+..+|.+|... .
T Consensus 193 vkfNpvETsILas~~sDrsIvLyD~R~~~---Pl~KV-i~~mRTN~IswnPea------fnF~~a~ED~nlY~~DmR~l~ 262 (433)
T KOG0268|consen 193 VKFNPVETSILASCASDRSIVLYDLRQAS---PLKKV-ILTMRTNTICWNPEA------FNFVAANEDHNLYTYDMRNLS 262 (433)
T ss_pred EecCCCcchheeeeccCCceEEEecccCC---cccee-eeeccccceecCccc------cceeeccccccceehhhhhhc
Confidence 44555443344444 58889999987654 12222 235789999999988 55554 4466799888654 1
Q ss_pred EEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcC
Q 016199 165 VLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSP 244 (393)
Q Consensus 165 ~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~ 244 (393)
+.+ ....+. .+.+-++++.|.|.=+++-+. ..+-+||-.+....+-..........-++.++.
T Consensus 263 ~p~-~v~~dh-vsAV~dVdfsptG~Efvsgsy---------------DksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~ 325 (433)
T KOG0268|consen 263 RPL-NVHKDH-VSAVMDVDFSPTGQEFVSGSY---------------DKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSM 325 (433)
T ss_pred ccc-hhhccc-ceeEEEeccCCCcchhccccc---------------cceEEEeecCCCcchhhhhHhhhheeeEEEEec
Confidence 122 111121 134557888999976666321 123345544432211111122355677888999
Q ss_pred CCCEEEEEeCCCCeEEEE
Q 016199 245 DQTHLVYCETSMRRCRKF 262 (393)
Q Consensus 245 dg~~l~v~~~~~~ri~~~ 262 (393)
|.+++ ++++..+.|..|
T Consensus 326 Dskyi-~SGSdd~nvRlW 342 (433)
T KOG0268|consen 326 DSKYI-ISGSDDGNVRLW 342 (433)
T ss_pred cccEE-EecCCCcceeee
Confidence 98654 666665544443
No 255
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=92.11 E-value=13 Score=37.77 Aligned_cols=120 Identities=13% Similarity=0.163 Sum_probs=59.3
Q ss_pred eEECCCCCCCCceEEEEEeCCCceEEEeCCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhccc
Q 016199 133 IAFANSDPDADRITMIVADAYKGLLKISGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEG 211 (393)
Q Consensus 133 l~~d~~G~~~~~~~L~v~~~~~gl~~id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~ 211 (393)
+..-++| +|+++. ...+..+|..| .... ...++....+=|++...++|++++.......... .....
T Consensus 153 ~~~l~nG------~ll~~~-~~~~~e~D~~G~v~~~-~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~----~~~~~ 220 (477)
T PF05935_consen 153 FKQLPNG------NLLIGS-GNRLYEIDLLGKVIWE-YDLPGGYYDFHHDIDELPNGNLLILASETKYVDE----DKDVD 220 (477)
T ss_dssp EEE-TTS-------EEEEE-BTEEEEE-TT--EEEE-EE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-T----S-EE-
T ss_pred eeEcCCC------CEEEec-CCceEEEcCCCCEEEe-eecCCcccccccccEECCCCCEEEEEeecccccC----CCCcc
Confidence 6677899 888885 47899999988 2211 2233322344689999999976654321110000 00001
Q ss_pred CCCcEEEEEeCCCCeEEEE------e----c------------------CccCCCcEEEcCCCCEEEEEeCCCCeEEEEE
Q 016199 212 KPNGRLLSFDPVTKETKVL------V----S------------------DLYFANGVVLSPDQTHLVYCETSMRRCRKFY 263 (393)
Q Consensus 212 ~~~g~l~~~d~~t~~~~~~------~----~------------------~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~ 263 (393)
.-...|..+| .+|++.-. . . +..+.|++.+++..+.|+++.+..+.|++++
T Consensus 221 ~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id 299 (477)
T PF05935_consen 221 TVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKID 299 (477)
T ss_dssp --S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE
T ss_pred EecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEE
Confidence 1223566777 44443321 0 0 1235688989886678999999999999999
Q ss_pred ec
Q 016199 264 IK 265 (393)
Q Consensus 264 ~~ 265 (393)
..
T Consensus 300 ~~ 301 (477)
T PF05935_consen 300 YR 301 (477)
T ss_dssp -T
T ss_pred CC
Confidence 53
No 256
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=92.05 E-value=9.9 Score=35.08 Aligned_cols=150 Identities=15% Similarity=0.188 Sum_probs=84.8
Q ss_pred cCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecC-C-------------CceeeeEECCCCCCCCceEE
Q 016199 82 LKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINT-G-------------GRPLGIAFANSDPDADRITM 147 (393)
Q Consensus 82 ~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~-~-------------~~p~gl~~d~~G~~~~~~~L 147 (393)
.+|+-.+++ +|...|--.....|+++++.++. +...... + ..-..+++|.+| |
T Consensus 69 ~~GtG~vVY--ngslYY~~~~s~~IvkydL~t~~----v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~G-------L 135 (250)
T PF02191_consen 69 WQGTGHVVY--NGSLYYNKYNSRNIVKYDLTTRS----VVARRELPGAGYNNRFPYYWSGYTDIDFAVDENG-------L 135 (250)
T ss_pred eccCCeEEE--CCcEEEEecCCceEEEEECcCCc----EEEEEECCccccccccceecCCCceEEEEEcCCC-------E
Confidence 456666665 34433433345689999998876 4412111 0 112578899888 8
Q ss_pred EEEeC---CCc---eEEEeCCce---EEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcE-E
Q 016199 148 IVADA---YKG---LLKISGNST---VLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGR-L 217 (393)
Q Consensus 148 ~v~~~---~~g---l~~id~~g~---~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~-l 217 (393)
||--+ ..| |-++|++.+ +.+......... .+ ++---|.||+++.... ...+ -
T Consensus 136 WvIYat~~~~g~ivvskld~~tL~v~~tw~T~~~k~~~--~n--aFmvCGvLY~~~s~~~--------------~~~~I~ 197 (250)
T PF02191_consen 136 WVIYATEDNNGNIVVSKLDPETLSVEQTWNTSYPKRSA--GN--AFMVCGVLYATDSYDT--------------RDTEIF 197 (250)
T ss_pred EEEEecCCCCCcEEEEeeCcccCceEEEEEeccCchhh--cc--eeeEeeEEEEEEECCC--------------CCcEEE
Confidence 87622 233 456787762 222222222111 12 3334689999975431 1123 4
Q ss_pred EEEeCCCCeEEEEec----CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEe
Q 016199 218 LSFDPVTKETKVLVS----DLYFANGVVLSPDQTHLVYCETSMRRCRKFYI 264 (393)
Q Consensus 218 ~~~d~~t~~~~~~~~----~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~ 264 (393)
+.||..+++...+.- ......-+...|..+.||+-+. +.+..|++
T Consensus 198 yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd~--G~~v~Y~v 246 (250)
T PF02191_consen 198 YAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAWDN--GYQVTYDV 246 (250)
T ss_pred EEEECCCCceeceeeeeccccCceEeeeECCCCCeEEEEEC--CeEEEEEE
Confidence 678988776543321 1233455778888889999875 66777776
No 257
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=92.03 E-value=9.4 Score=34.79 Aligned_cols=149 Identities=12% Similarity=0.087 Sum_probs=84.8
Q ss_pred EecCCCEEEEEecCCeEEEEEcCCC---CC--cceeeeee--cCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeC-
Q 016199 90 YDAHSKLIYTGCEDGWIKRVTLNDS---PA--DSLVHNWI--NTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISG- 161 (393)
Q Consensus 90 ~d~~g~~L~~~~~~g~I~~~~~~~~---~~--~~~~~~~~--~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~- 161 (393)
++|-++.|++|+..|.|..+.++.- .. +.....+. ...+..+.++|. +. .|+.| ..+-++-+.-
T Consensus 18 ~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~-d~------~Lls~-gdG~V~gw~W~ 89 (325)
T KOG0649|consen 18 ISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH-DD------FLLSG-GDGLVYGWEWN 89 (325)
T ss_pred hCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee-hh------heeec-cCceEEEeeeh
Confidence 5677778888888998877766431 10 00011111 123445677776 33 45555 3332333321
Q ss_pred -----CceEE-E----eeccCCccccccccEEEcC-CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE
Q 016199 162 -----NSTVL-L----TDEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL 230 (393)
Q Consensus 162 -----~g~~~-l----~~~~~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~ 230 (393)
.+.+. + ....+..+..-+|.+..|| +|.++++ .+.+-+|.+|.++|+++..
T Consensus 90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~A------------------gGD~~~y~~dlE~G~i~r~ 151 (325)
T KOG0649|consen 90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFA------------------GGDGVIYQVDLEDGRIQRE 151 (325)
T ss_pred hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEe------------------cCCeEEEEEEecCCEEEEE
Confidence 11111 1 1112223345578999997 5678877 4567899999999998876
Q ss_pred ecC-ccCCCcEEE-cCCCCEEEEEeCCCCeEEEEEecC
Q 016199 231 VSD-LYFANGVVL-SPDQTHLVYCETSMRRCRKFYIKG 266 (393)
Q Consensus 231 ~~~-l~~~ngi~~-s~dg~~l~v~~~~~~ri~~~~~~g 266 (393)
.++ ..+.+.+.. ...++ +++....+.+..++.+.
T Consensus 152 ~rGHtDYvH~vv~R~~~~q--ilsG~EDGtvRvWd~kt 187 (325)
T KOG0649|consen 152 YRGHTDYVHSVVGRNANGQ--ILSGAEDGTVRVWDTKT 187 (325)
T ss_pred EcCCcceeeeeeecccCcc--eeecCCCccEEEEeccc
Confidence 554 345566654 33343 35666678888888753
No 258
>PRK13616 lipoprotein LpqB; Provisional
Probab=91.79 E-value=19 Score=37.72 Aligned_cols=156 Identities=9% Similarity=0.030 Sum_probs=81.0
Q ss_pred cCCCceEEEecCCCEE-EEEe-----cC--CeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC
Q 016199 82 LKGPEDLLYDAHSKLI-YTGC-----ED--GWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY 153 (393)
Q Consensus 82 ~~~Pe~ia~d~~g~~L-~~~~-----~~--g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~ 153 (393)
...+.+++++++|+.+ |+.. .+ ..|+..+..+. ...+.. +..-..-.++++| ..||+....
T Consensus 349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~-----~~~lt~-g~~~t~PsWspDG-----~~lw~v~dg 417 (591)
T PRK13616 349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV-----AVQVLE-GHSLTRPSWSLDA-----DAVWVVVDG 417 (591)
T ss_pred ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc-----ceeeec-CCCCCCceECCCC-----CceEEEecC
Confidence 3466788999999854 4432 12 25666664332 222221 2223456678885 268877433
Q ss_pred CceEEEe-CCc-eEEEeeccCCcc-----ccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEE---EeC
Q 016199 154 KGLLKIS-GNS-TVLLTDEAEGQK-----FKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLS---FDP 222 (393)
Q Consensus 154 ~gl~~id-~~g-~~~l~~~~~g~~-----~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~---~d~ 222 (393)
..+.++. .++ .+......++.. -..+..+.+++|| +|.|.. .++|+. ...
T Consensus 418 ~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-------------------~g~v~Va~Vvr~ 478 (591)
T PRK13616 418 NTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-------------------GGKVYLAVVEQT 478 (591)
T ss_pred cceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-------------------CCEEEEEEEEeC
Confidence 2344332 222 111111111110 1236788999999 566652 124444 333
Q ss_pred CCCeEEE-----EecCccC-CCcEEEcCCCCEEEEEeC-CCCeEEEEEecCCC
Q 016199 223 VTKETKV-----LVSDLYF-ANGVVLSPDQTHLVYCET-SMRRCRKFYIKGKN 268 (393)
Q Consensus 223 ~t~~~~~-----~~~~l~~-~ngi~~s~dg~~l~v~~~-~~~ri~~~~~~g~~ 268 (393)
..|+.+. +...+.. +..+.+..|+. |++... ....++++.++|..
T Consensus 479 ~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~-L~V~~~~~~~~v~~v~vDG~~ 530 (591)
T PRK13616 479 EDGQYALTNPREVGPGLGDTAVSLDWRTGDS-LVVGRSDPEHPVWYVNLDGSN 530 (591)
T ss_pred CCCceeecccEEeecccCCccccceEecCCE-EEEEecCCCCceEEEecCCcc
Confidence 3444332 3334443 57788988886 555443 34568888888763
No 259
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=91.69 E-value=0.84 Score=28.86 Aligned_cols=36 Identities=19% Similarity=0.051 Sum_probs=28.0
Q ss_pred cCccCCCceEEEecCCCEEEEEec-CCeEEEEEcCCC
Q 016199 79 YGVLKGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDS 114 (393)
Q Consensus 79 ~g~~~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~ 114 (393)
...+..|.++++|+.++.||+.+. .+.|.+.+.++.
T Consensus 5 ~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~ 41 (43)
T smart00135 5 SEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41 (43)
T ss_pred ECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence 445789999999999888886654 567888887653
No 260
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=91.49 E-value=15 Score=36.18 Aligned_cols=163 Identities=19% Similarity=0.184 Sum_probs=84.1
Q ss_pred ccEEEcCCCc-EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccC--CCcEEEcCCCCEEEEEeCCC
Q 016199 180 DGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYF--ANGVVLSPDQTHLVYCETSM 256 (393)
Q Consensus 180 ~~l~~d~dG~-l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~--~ngi~~s~dg~~l~v~~~~~ 256 (393)
..+.+++||+ +.++-. ..|+..-.|+.+|.++|+... +.+.. ..++++.+|++.+|.+....
T Consensus 127 ~~~~~Spdg~~la~~~s-------------~~G~e~~~l~v~Dl~tg~~l~--d~i~~~~~~~~~W~~d~~~~~y~~~~~ 191 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLS-------------DGGSEWYTLRVFDLETGKFLP--DGIENPKFSSVSWSDDGKGFFYTRFDE 191 (414)
T ss_dssp EEEEETTTSSEEEEEEE-------------ETTSSEEEEEEEETTTTEEEE--EEEEEEESEEEEECTTSSEEEEEECST
T ss_pred eeeeECCCCCEEEEEec-------------CCCCceEEEEEEECCCCcCcC--CcccccccceEEEeCCCCEEEEEEeCc
Confidence 4567888885 334411 112233468999999886532 22222 23399999998887776443
Q ss_pred ----------CeEEEEEecCCCCcceeeeeccCCCC-CCeEEECCCCCEEEE-EecCcchhhhhhhcCcchhhhhhhhhh
Q 016199 257 ----------RRCRKFYIKGKNAGRVEKFIETLPGL-PDNIRYDGEGHYLIA-LATEFSTYWDLAYRYPFIRKVSGMVVR 324 (393)
Q Consensus 257 ----------~ri~~~~~~g~~~~~~~~~~~~l~g~-P~~i~~d~~G~lwva-~~~~r~~~~~~~~~~~~~r~~~~~~~~ 324 (393)
.+|+++.+.........+|-+..+.+ --++..+.||++.+- .....+
T Consensus 192 ~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~--------------------- 250 (414)
T PF02897_consen 192 DQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTS--------------------- 250 (414)
T ss_dssp TTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSS---------------------
T ss_pred ccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcccc---------------------
Confidence 24777776433221123333222222 235677889986543 332211
Q ss_pred hhCCCCCCCCCceEEEECCCCc-----EEEEeeCCCCCccEEEEEeCCEEEEEecC---CCeEEEEeCCCCC
Q 016199 325 YLGMPPMGKSSSGVFIVDLDGK-----PIAHYYDPEMSLISSAIKIGDHLYCGSVH---HRGILHLDVNQHP 388 (393)
Q Consensus 325 ~~~~~~~~~~~~~v~~~d~~g~-----~~~~~~d~~~~~~~~~~~~~g~Lyigs~~---~~~i~~~~~~~~~ 388 (393)
...++.++.+.. ....+..+.......+...++.+|+-+.. ...|.+++++...
T Consensus 251 ----------~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~ 312 (414)
T PF02897_consen 251 ----------ESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPS 312 (414)
T ss_dssp ----------EEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTS
T ss_pred ----------CCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccc
Confidence 134666665432 33344333222333444457888876543 2477778876654
No 261
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=91.30 E-value=13 Score=34.95 Aligned_cols=172 Identities=19% Similarity=0.232 Sum_probs=92.6
Q ss_pred EEEEEeCCCceEEEeCCc---eEEEee-ccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEE
Q 016199 146 TMIVADAYKGLLKISGNS---TVLLTD-EAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSF 220 (393)
Q Consensus 146 ~L~v~~~~~gl~~id~~g---~~~l~~-~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~ 220 (393)
..|++++..||..+|-.. .+++.. ...|. ..++.+ .| ..|++|. +.+++.+
T Consensus 98 yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gy----aygv~v--sGn~aYVadl------------------ddgfLiv 153 (370)
T COG5276 98 YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGY----AYGVYV--SGNYAYVADL------------------DDGFLIV 153 (370)
T ss_pred EEEEEcCCCceEEEeccCCCCcceeccccCCce----EEEEEe--cCCEEEEeec------------------cCcEEEE
Confidence 799999999999998544 122211 11121 123333 34 6888862 3368888
Q ss_pred eCCCCeEEEEecCccCC----CcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeecc--CCCCCCeEEECCCCCE
Q 016199 221 DPVTKETKVLVSDLYFA----NGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIET--LPGLPDNIRYDGEGHY 294 (393)
Q Consensus 221 d~~t~~~~~~~~~l~~~----ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~--l~g~P~~i~~d~~G~l 294 (393)
|..+-..-.++.....+ ..++++ |+.-|++.. ++++...|+..+.. .+|+.. ..+...++.+. +.+.
T Consensus 154 dvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~-d~GL~ivDVSnp~s---Pvli~~~n~g~g~~sv~vs-dnr~ 226 (370)
T COG5276 154 DVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWR-DGGLTIVDVSNPHS---PVLIGSYNTGPGTYSVSVS-DNRA 226 (370)
T ss_pred ECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEe-CCCeEEEEccCCCC---CeEEEEEecCCceEEEEec-CCee
Confidence 86544433333333333 446666 557888875 57788889875421 223221 11122334443 3445
Q ss_pred EEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCc----EEEEeeCCCCCccEEEEEeCCEEE
Q 016199 295 LIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGK----PIAHYYDPEMSLISSAIKIGDHLY 370 (393)
Q Consensus 295 wva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~----~~~~~~d~~~~~~~~~~~~~g~Ly 370 (393)
|++... .+++.+|.++. ++-++.......++.+...+.+.|
T Consensus 227 y~vvy~-----------------------------------egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Y 271 (370)
T COG5276 227 YLVVYD-----------------------------------EGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAY 271 (370)
T ss_pred EEEEcc-----------------------------------cceEEEecCCCCCceEeeccccCCcccccceecccceee
Confidence 554442 25666766553 333444333334445566778888
Q ss_pred EEecCCCeEEEEeC
Q 016199 371 CGSVHHRGILHLDV 384 (393)
Q Consensus 371 igs~~~~~i~~~~~ 384 (393)
+.- .+.++..+|.
T Consensus 272 vad-ga~gl~~idi 284 (370)
T COG5276 272 VAD-GAKGLPIIDI 284 (370)
T ss_pred eec-cccCceeEec
Confidence 874 3445666554
No 262
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=91.20 E-value=1.8 Score=44.34 Aligned_cols=146 Identities=15% Similarity=0.071 Sum_probs=78.2
Q ss_pred EEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC-CceEEEeCCc-eEEEeeccCCc
Q 016199 97 IYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY-KGLLKISGNS-TVLLTDEAEGQ 174 (393)
Q Consensus 97 L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~-~gl~~id~~g-~~~l~~~~~g~ 174 (393)
|-+++.|-.|..||...... ...+....+...+++..++| +....-.. +.|..+++.. .+.+. +-.|.
T Consensus 693 La~asyd~Ti~lWDl~~~~~---~~~l~gHtdqIf~~AWSpdG------r~~AtVcKDg~~rVy~Prs~e~pv~-Eg~gp 762 (1012)
T KOG1445|consen 693 LAVASYDSTIELWDLANAKL---YSRLVGHTDQIFGIAWSPDG------RRIATVCKDGTLRVYEPRSREQPVY-EGKGP 762 (1012)
T ss_pred hhhhhccceeeeeehhhhhh---hheeccCcCceeEEEECCCC------cceeeeecCceEEEeCCCCCCCccc-cCCCC
Confidence 34455666777777765331 22233345678999999999 66554443 4466677654 32332 11111
Q ss_pred cccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE----ecCccCCCcEEEcCCCCEEE
Q 016199 175 KFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL----VSDLYFANGVVLSPDQTHLV 250 (393)
Q Consensus 175 ~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~----~~~l~~~ngi~~s~dg~~l~ 250 (393)
....---|.+.-||++.+...-.+ ...-.|..||..+-....+ ++--..+---.+++|...++
T Consensus 763 vgtRgARi~wacdgr~viv~Gfdk-------------~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lf 829 (1012)
T KOG1445|consen 763 VGTRGARILWACDGRIVIVVGFDK-------------SSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLF 829 (1012)
T ss_pred ccCcceeEEEEecCcEEEEecccc-------------cchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEE
Confidence 111112456666787666532111 1222356666543221111 11111122223567888999
Q ss_pred EEeCCCCeEEEEEec
Q 016199 251 YCETSMRRCRKFYIK 265 (393)
Q Consensus 251 v~~~~~~ri~~~~~~ 265 (393)
++.-+..+|+.|.+-
T Consensus 830 ltGKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 830 LTGKGDRFVNMYEVI 844 (1012)
T ss_pred EecCCCceEEEEEec
Confidence 999999999999874
No 263
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=91.19 E-value=7.8 Score=37.95 Aligned_cols=173 Identities=14% Similarity=0.103 Sum_probs=93.9
Q ss_pred ccCcccccccCceEEecCccCCCceEEEecCCC-EEEEEecCCeEEEEEcCCCCCc-c---eeeeeecCCCceeeeEECC
Q 016199 63 AALRNERMLQGSEKVGYGVLKGPEDLLYDAHSK-LIYTGCEDGWIKRVTLNDSPAD-S---LVHNWINTGGRPLGIAFAN 137 (393)
Q Consensus 63 ~~~~~~~~l~~~~~l~~g~~~~Pe~ia~d~~g~-~L~~~~~~g~I~~~~~~~~~~~-~---~~~~~~~~~~~p~gl~~d~ 137 (393)
|.+.|+-+|..-+.- -.++.|..... +|..++.++.|..|+.+....+ + ....+.........+++.+
T Consensus 165 ~~~~Pdl~L~gH~~e-------g~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~ 237 (422)
T KOG0264|consen 165 GECRPDLRLKGHEKE-------GYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHP 237 (422)
T ss_pred ccCCCceEEEeeccc-------ccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccc
Confidence 345556666554442 22355665332 4667777889999988754311 0 0111211223345555554
Q ss_pred CCCCCCceEEEEEeCCCc-eEEEeCCc-eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCC
Q 016199 138 SDPDADRITMIVADAYKG-LLKISGNS-TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPN 214 (393)
Q Consensus 138 ~G~~~~~~~L~v~~~~~g-l~~id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~ 214 (393)
.. +.|+..-.+.+ +...|... ........... -.-+|.+++.|-+ .|..+ . +..
T Consensus 238 ~h-----~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah-~~~vn~~~fnp~~~~ilAT-~----------------S~D 294 (422)
T KOG0264|consen 238 LH-----EDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAH-SAEVNCVAFNPFNEFILAT-G----------------SAD 294 (422)
T ss_pred cc-----hhhheeecCCCeEEEEEcCCCCCCCccccccc-CCceeEEEeCCCCCceEEe-c----------------cCC
Confidence 33 14555444444 44555431 00000011111 1235688888855 55544 2 345
Q ss_pred cEEEEEeCCCCe--EEEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199 215 GRLLSFDPVTKE--TKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIK 265 (393)
Q Consensus 215 g~l~~~d~~t~~--~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~ 265 (393)
++|.-||+..=. +..+...-.....|.++|+.+.++.+....+|+..||+.
T Consensus 295 ~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 295 KTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLS 347 (422)
T ss_pred CcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence 678888875322 222222223356788999999999999899999999996
No 264
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=91.19 E-value=11 Score=39.18 Aligned_cols=151 Identities=13% Similarity=0.058 Sum_probs=88.6
Q ss_pred eEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCC---ceeeeEECCCCCCCCc-eEEEEEeCCCceEEEeCC
Q 016199 87 DLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGG---RPLGIAFANSDPDADR-ITMIVADAYKGLLKISGN 162 (393)
Q Consensus 87 ~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~---~p~gl~~d~~G~~~~~-~~L~v~~~~~gl~~id~~ 162 (393)
+.+|..||+.+-+|..+|.|-.-+..+.. .-.+..+++ ..-++++.++- -.++ +.+-|.|+...+-.+..+
T Consensus 137 ~CsWtnDGqylalG~~nGTIsiRNk~gEe----k~~I~Rpgg~Nspiwsi~~~p~s-g~G~~di~aV~DW~qTLSFy~Ls 211 (1081)
T KOG1538|consen 137 CCSWTNDGQYLALGMFNGTISIRNKNGEE----KVKIERPGGSNSPIWSICWNPSS-GEGRNDILAVADWGQTLSFYQLS 211 (1081)
T ss_pred EeeecCCCcEEEEeccCceEEeecCCCCc----ceEEeCCCCCCCCceEEEecCCC-CCCccceEEEEeccceeEEEEec
Confidence 46788999988888889987655544332 112222221 23577776531 0122 256777887777777777
Q ss_pred ceEEEeeccCCcccc-ccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcE
Q 016199 163 STVLLTDEAEGQKFK-LTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGV 240 (393)
Q Consensus 163 g~~~l~~~~~g~~~~-~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi 240 (393)
|. .+.. ...+. -|..+..=++| .+.++ ..++.+..|..++-.+-++.+.-.....+
T Consensus 212 G~-~Igk---~r~L~FdP~CisYf~NGEy~LiG------------------Gsdk~L~~fTR~GvrLGTvg~~D~WIWtV 269 (1081)
T KOG1538|consen 212 GK-QIGK---DRALNFDPCCISYFTNGEYILLG------------------GSDKQLSLFTRDGVRLGTVGEQDSWIWTV 269 (1081)
T ss_pred ce-eecc---cccCCCCchhheeccCCcEEEEc------------------cCCCceEEEeecCeEEeeccccceeEEEE
Confidence 61 1110 01111 14455555677 44454 44566777777654555555545567788
Q ss_pred EEcCCCCEEEEEeCCCCeEEEEEec
Q 016199 241 VLSPDQTHLVYCETSMRRCRKFYIK 265 (393)
Q Consensus 241 ~~s~dg~~l~v~~~~~~ri~~~~~~ 265 (393)
++.|+++.+ +..+-.++|-+|++-
T Consensus 270 ~~~PNsQ~v-~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 270 QAKPNSQYV-VVGCQDGTIACYNLI 293 (1081)
T ss_pred EEccCCceE-EEEEccCeeehhhhH
Confidence 899998654 556678889888864
No 265
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=91.18 E-value=11 Score=36.49 Aligned_cols=85 Identities=11% Similarity=0.154 Sum_probs=55.8
Q ss_pred CCCcEEEEEeCCCCeEEEEecCccCC-CcEEEcCCCCEEEEEeCC----CCeEEEEEecCCCCcceeeeeccCCCCCC-e
Q 016199 212 KPNGRLLSFDPVTKETKVLVSDLYFA-NGVVLSPDQTHLVYCETS----MRRCRKFYIKGKNAGRVEKFIETLPGLPD-N 285 (393)
Q Consensus 212 ~~~g~l~~~d~~t~~~~~~~~~l~~~-ngi~~s~dg~~l~v~~~~----~~ri~~~~~~g~~~~~~~~~~~~l~g~P~-~ 285 (393)
.+-..|+.++..++..+.+..+-... .-+.++++++.+|+..+. ...|++.+++ ..+..+.+. ... ... .
T Consensus 257 ~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~--~~~~~~~LT-~~~-~~~~~ 332 (353)
T PF00930_consen 257 DGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD--SGGEPKCLT-CED-GDHYS 332 (353)
T ss_dssp TSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT--ETTEEEESS-TTS-STTEE
T ss_pred CCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC--CCCCeEecc-CCC-CCceE
Confidence 45668999999988877665554333 346788999999998876 3478888876 123334333 222 233 6
Q ss_pred EEECCCCCEEEEEec
Q 016199 286 IRYDGEGHYLIALAT 300 (393)
Q Consensus 286 i~~d~~G~lwva~~~ 300 (393)
+.++++|++++-...
T Consensus 333 ~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 333 ASFSPDGKYYVDTYS 347 (353)
T ss_dssp EEE-TTSSEEEEEEE
T ss_pred EEECCCCCEEEEEEc
Confidence 889999998886653
No 266
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=91.16 E-value=21 Score=37.17 Aligned_cols=209 Identities=14% Similarity=0.104 Sum_probs=105.8
Q ss_pred eEEEEEcCCCCCcceeeeeecCC--CceeeeEECCCCCCCCceEEEEEeCCC-c------eEEEeCCceEEEeeccCCcc
Q 016199 105 WIKRVTLNDSPADSLVHNWINTG--GRPLGIAFANSDPDADRITMIVADAYK-G------LLKISGNSTVLLTDEAEGQK 175 (393)
Q Consensus 105 ~I~~~~~~~~~~~~~~~~~~~~~--~~p~gl~~d~~G~~~~~~~L~v~~~~~-g------l~~id~~g~~~l~~~~~g~~ 175 (393)
.+..|++..+. +....... ..-.++++- +| .||+..... | +.++|+...+ +.....-..
T Consensus 302 ~ve~yd~~~~~----w~~~a~m~~~r~~~~~~~~-~~------~lYv~GG~~~~~~~l~~ve~YD~~~~~-W~~~a~M~~ 369 (571)
T KOG4441|consen 302 SVECYDPKTNE----WSSLAPMPSPRCRVGVAVL-NG------KLYVVGGYDSGSDRLSSVERYDPRTNQ-WTPVAPMNT 369 (571)
T ss_pred eeEEecCCcCc----EeecCCCCcccccccEEEE-CC------EEEEEccccCCCcccceEEEecCCCCc-eeccCCccC
Confidence 46677777654 44443321 112455554 56 899886655 3 5667775511 111000000
Q ss_pred ccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCcc--CCCcEEEcCCCCEEEEEe
Q 016199 176 FKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLY--FANGVVLSPDQTHLVYCE 253 (393)
Q Consensus 176 ~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~--~~ngi~~s~dg~~l~v~~ 253 (393)
-+.-.++++ -+|.||+.-... .......+-+|||.+.+.+.+..-.. .-.|++. -+| .||+..
T Consensus 370 ~R~~~~v~~-l~g~iYavGG~d------------g~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~-~~g-~iYi~G 434 (571)
T KOG4441|consen 370 KRSDFGVAV-LDGKLYAVGGFD------------GEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV-LGG-KLYIIG 434 (571)
T ss_pred ccccceeEE-ECCEEEEEeccc------------cccccccEEEecCCCCcccccCCCCcceeeeEEEE-ECC-EEEEEc
Confidence 112223332 267888763211 11223468999999998887654322 2233333 244 688876
Q ss_pred CC------CCeEEEEEecCCCCcceeeeeccCC--CCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhh
Q 016199 254 TS------MRRCRKFYIKGKNAGRVEKFIETLP--GLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRY 325 (393)
Q Consensus 254 ~~------~~ri~~~~~~g~~~~~~~~~~~~l~--g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~ 325 (393)
-. -..+.+||+..++ -+... ..+ ..--+++.- +|.+|+.......
T Consensus 435 G~~~~~~~l~sve~YDP~t~~---W~~~~-~M~~~R~~~g~a~~-~~~iYvvGG~~~~---------------------- 487 (571)
T KOG4441|consen 435 GGDGSSNCLNSVECYDPETNT---WTLIA-PMNTRRSGFGVAVL-NGKIYVVGGFDGT---------------------- 487 (571)
T ss_pred CcCCCccccceEEEEcCCCCc---eeecC-CcccccccceEEEE-CCEEEEECCccCC----------------------
Confidence 52 2467888875432 11111 111 011234433 5677765332110
Q ss_pred hCCCCCCCCCceEEEECCCCcEEEEeeCCC-CCccEEEEEeCCEEEEEec
Q 016199 326 LGMPPMGKSSSGVFIVDLDGKPIAHYYDPE-MSLISSAIKIGDHLYCGSV 374 (393)
Q Consensus 326 ~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~-~~~~~~~~~~~g~Lyigs~ 374 (393)
.....|-++|+..........-. ......+...++.||+-+-
T Consensus 488 -------~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 488 -------SALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred -------CccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEec
Confidence 01124888999877666654322 2333445667888887653
No 267
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=91.08 E-value=0.88 Score=29.35 Aligned_cols=40 Identities=18% Similarity=0.212 Sum_probs=30.2
Q ss_pred EEEEEeCCCC-eEEEEEecCCCCcceeeeeccCCCCCCeEEECC
Q 016199 248 HLVYCETSMR-RCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDG 290 (393)
Q Consensus 248 ~l~v~~~~~~-ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~ 290 (393)
.+||++.... +|.+-+++|.. .++++...-..|.+|++|.
T Consensus 2 ~iYWtD~~~~~~I~~a~~dGs~---~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 2 KIYWTDWSQDPSIERANLDGSN---RRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp EEEEEETTTTEEEEEEETTSTS---EEEEEESSTSSEEEEEEET
T ss_pred EEEEEECCCCcEEEEEECCCCC---eEEEEECCCCCcCEEEECC
Confidence 6999999999 99999998753 3444434344799999873
No 268
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=90.87 E-value=16 Score=35.17 Aligned_cols=51 Identities=8% Similarity=0.173 Sum_probs=29.6
Q ss_pred EEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecC
Q 016199 248 HLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATE 301 (393)
Q Consensus 248 ~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~ 301 (393)
.+.++.+....|-.+++.. +..-.-+.+....-.++++.+.|+|.+++...
T Consensus 305 ~~l~s~SrDktIk~wdv~t---g~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDD 355 (406)
T KOG0295|consen 305 QVLGSGSRDKTIKIWDVST---GMCLFTLVGHDNWVRGVAFSPGGKYILSCADD 355 (406)
T ss_pred cEEEeecccceEEEEeccC---CeEEEEEecccceeeeeEEcCCCeEEEEEecC
Confidence 4556666566666666642 22111111222235678899999999888755
No 269
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=90.64 E-value=14 Score=34.05 Aligned_cols=104 Identities=14% Similarity=0.239 Sum_probs=58.4
Q ss_pred cEEEEEeCCCCeEEEEecC-------ccCCCcEEEcCCC---CEEEEEeCCCCeEEEEEecCCCCcc-----eeeeeccC
Q 016199 215 GRLLSFDPVTKETKVLVSD-------LYFANGVVLSPDQ---THLVYCETSMRRCRKFYIKGKNAGR-----VEKFIETL 279 (393)
Q Consensus 215 g~l~~~d~~t~~~~~~~~~-------l~~~ngi~~s~dg---~~l~v~~~~~~ri~~~~~~g~~~~~-----~~~~~~~l 279 (393)
-.+|.+||+++.++.+.+. +..+.|+++..+. .+-.+...-.+-+..|.+-....+. .+.| .+
T Consensus 126 i~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR~f--k~ 203 (364)
T COG4247 126 IVFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLVRQF--KI 203 (364)
T ss_pred EEEEEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceeeEee--ec
Confidence 3578889988877776543 5678899987653 3333334445778788774221121 2223 23
Q ss_pred CCCCCeEEEC-CCCCEEEEEecCcchhhhhhhc--Ccchhhhhhhh
Q 016199 280 PGLPDNIRYD-GEGHYLIALATEFSTYWDLAYR--YPFIRKVSGMV 322 (393)
Q Consensus 280 ~g~P~~i~~d-~~G~lwva~~~~r~~~~~~~~~--~~~~r~~~~~~ 322 (393)
+..-.|+..| .-|.+||+.-.. .+|.+-++ ..--++++.++
T Consensus 204 ~tQTEG~VaDdEtG~LYIaeEdv--aiWK~~Aep~~G~~g~~idr~ 247 (364)
T COG4247 204 PTQTEGMVADDETGFLYIAEEDV--AIWKYEAEPNRGNTGRLIDRI 247 (364)
T ss_pred CCcccceeeccccceEEEeeccc--eeeecccCCCCCCccchhhhh
Confidence 4445666654 458899986432 33433322 23444554443
No 270
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.49 E-value=3.3 Score=45.02 Aligned_cols=153 Identities=18% Similarity=0.186 Sum_probs=78.7
Q ss_pred EEEecCCCE----EEEEecCCeEEEEEcCCC-CCc--ceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC-CceEEE
Q 016199 88 LLYDAHSKL----IYTGCEDGWIKRVTLNDS-PAD--SLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY-KGLLKI 159 (393)
Q Consensus 88 ia~d~~g~~----L~~~~~~g~I~~~~~~~~-~~~--~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~-~gl~~i 159 (393)
++|.+.|.. |--|..||.|..|++..- .+. ..+.......+...|+.|.+.+. ++....+. +-|+.+
T Consensus 70 L~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~-----nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 70 LAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQG-----NLLASGADDGEILIW 144 (1049)
T ss_pred eeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCC-----ceeeccCCCCcEEEe
Confidence 445554443 545567999999998752 110 11222223456789999998761 35444333 448888
Q ss_pred eCCc-eEEEeeccCCc-cccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC---
Q 016199 160 SGNS-TVLLTDEAEGQ-KFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD--- 233 (393)
Q Consensus 160 d~~g-~~~l~~~~~g~-~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~--- 233 (393)
|.+. .+... ..+. ....+..+.....- .|+. .+..+|+...+|...++...-...
T Consensus 145 Dlnn~~tP~~--~~~~~~~~eI~~lsWNrkvqhILA-----------------S~s~sg~~~iWDlr~~~pii~ls~~~~ 205 (1049)
T KOG0307|consen 145 DLNKPETPFT--PGSQAPPSEIKCLSWNRKVSHILA-----------------SGSPSGRAVIWDLRKKKPIIKLSDTPG 205 (1049)
T ss_pred ccCCcCCCCC--CCCCCCcccceEeccchhhhHHhh-----------------ccCCCCCceeccccCCCcccccccCCC
Confidence 8765 21111 1111 01112222222211 2322 235567888888865432211111
Q ss_pred ccCCCcEEEcCCCCEEEEEeCCCC---eEEEEEe
Q 016199 234 LYFANGVVLSPDQTHLVYCETSMR---RCRKFYI 264 (393)
Q Consensus 234 l~~~ngi~~s~dg~~l~v~~~~~~---ri~~~~~ 264 (393)
-..-++++++||.-.-++..+... .|..+|+
T Consensus 206 ~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDl 239 (1049)
T KOG0307|consen 206 RMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDL 239 (1049)
T ss_pred ccceeeeeeCCCCceeeeeecCCCCCceeEeecc
Confidence 123468999999875555544444 4556665
No 271
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=90.42 E-value=26 Score=36.95 Aligned_cols=178 Identities=13% Similarity=0.114 Sum_probs=94.9
Q ss_pred EEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeC-CCceEEEeCCc---
Q 016199 88 LLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADA-YKGLLKISGNS--- 163 (393)
Q Consensus 88 ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~-~~gl~~id~~g--- 163 (393)
+...++.-+|-+|..||-|..|+...+. ..-.+........-|.+|..| ..++... +.-|..+|.=+
T Consensus 71 l~~~~d~l~lAVGYaDGsVqif~~~s~~---~~~tfngHK~AVt~l~fd~~G------~rlaSGskDt~IIvwDlV~E~G 141 (888)
T KOG0306|consen 71 LRSSDDILLLAVGYADGSVQIFSLESEE---ILITFNGHKAAVTTLKFDKIG------TRLASGSKDTDIIVWDLVGEEG 141 (888)
T ss_pred eeccCCcceEEEEecCceEEeeccCCCc---eeeeecccccceEEEEEcccC------ceEeecCCCccEEEEEecccee
Confidence 4444555456789999988888866442 011221123456778899988 5544433 44577777433
Q ss_pred eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeE-EEEecCccCCCcEEE
Q 016199 164 TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKET-KVLVSDLYFANGVVL 242 (393)
Q Consensus 164 ~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~-~~~~~~l~~~ngi~~ 242 (393)
.-.+ .|.. ..+...-+-.+..+.++. ...+.+-.+|.++... .+..+.-....++++
T Consensus 142 l~rL----~GHk-d~iT~~~F~~~~~~lvS~-----------------sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~ 199 (888)
T KOG0306|consen 142 LFRL----RGHK-DSITQALFLNGDSFLVSV-----------------SKDSMIKFWDLETQHCFETHVDHRGEIWALVL 199 (888)
T ss_pred eEEe----ecch-HHHhHHhccCCCeEEEEe-----------------ccCceEEEEecccceeeeEEecccceEEEEEE
Confidence 1122 1211 112222233334555653 2223455567766542 334444455677877
Q ss_pred cCCCCEEEEEeCCCCeEEEEEecC--CC--------CcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199 243 SPDQTHLVYCETSMRRCRKFYIKG--KN--------AGRVEKFIETLPGLPDNIRYDGEGHYLIALA 299 (393)
Q Consensus 243 s~dg~~l~v~~~~~~ri~~~~~~g--~~--------~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~ 299 (393)
++ .+.++....+.+..|++.- +. ....-.+..+-.+.+.+++.|.++++.+.-.
T Consensus 200 ~~---~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g 263 (888)
T KOG0306|consen 200 DE---KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQG 263 (888)
T ss_pred ec---ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEec
Confidence 76 2455555666676776621 11 1112234434456788899999998666543
No 272
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=90.33 E-value=8.3 Score=37.34 Aligned_cols=154 Identities=16% Similarity=0.208 Sum_probs=88.2
Q ss_pred CCceEEEecCCCEEEEEecCCeEEEEEcCCCC-CcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCC
Q 016199 84 GPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSP-ADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGN 162 (393)
Q Consensus 84 ~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~-~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~ 162 (393)
.|..+...++++.+++++.+.+.+.++..... +.+....+ ....+|..+.+..+. ....|++..+-.+.++--
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~-----~sv~v~dkagD~~~~di~ 137 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIRED-----TSVLVADKAGDVYSFDIL 137 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeeecc-----ceEEEEeecCCceeeeee
Confidence 44456677788877788777665444433321 11111211 234567788776644 156777665556665421
Q ss_pred ----c-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE-ecCccC
Q 016199 163 ----S-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL-VSDLYF 236 (393)
Q Consensus 163 ----g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~-~~~l~~ 236 (393)
+ .+.+ -|. .....+|++.+|+...++.- ....-++.+|.. +..+..+ ...-.|
T Consensus 138 s~~~~~~~~~----lGh-vSml~dVavS~D~~~IitaD---------------RDEkIRvs~ypa-~f~IesfclGH~eF 196 (390)
T KOG3914|consen 138 SADSGRCEPI----LGH-VSMLLDVAVSPDDQFIITAD---------------RDEKIRVSRYPA-TFVIESFCLGHKEF 196 (390)
T ss_pred cccccCcchh----hhh-hhhhheeeecCCCCEEEEec---------------CCceEEEEecCc-ccchhhhccccHhh
Confidence 2 1111 111 23456899999997666631 123345666643 3444333 223467
Q ss_pred CCcEEEcCCCCEEEEEeCCCCeEEEEEecC
Q 016199 237 ANGVVLSPDQTHLVYCETSMRRCRKFYIKG 266 (393)
Q Consensus 237 ~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g 266 (393)
...+++.++ ..+++..+.+.|+.|++..
T Consensus 197 VS~isl~~~--~~LlS~sGD~tlr~Wd~~s 224 (390)
T KOG3914|consen 197 VSTISLTDN--YLLLSGSGDKTLRLWDITS 224 (390)
T ss_pred eeeeeeccC--ceeeecCCCCcEEEEeccc
Confidence 788888755 3578889999999999863
No 273
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=90.12 E-value=20 Score=37.03 Aligned_cols=188 Identities=15% Similarity=0.131 Sum_probs=95.9
Q ss_pred CCceEEE-ecCCCEEEEE-ecCCeEEEEEcCCCCCcceeeeee-----cCC----CceeeeEECCCCCCCCceEEEEEeC
Q 016199 84 GPEDLLY-DAHSKLIYTG-CEDGWIKRVTLNDSPADSLVHNWI-----NTG----GRPLGIAFANSDPDADRITMIVADA 152 (393)
Q Consensus 84 ~Pe~ia~-d~~g~~L~~~-~~~g~I~~~~~~~~~~~~~~~~~~-----~~~----~~p~gl~~d~~G~~~~~~~L~v~~~ 152 (393)
.--++++ .++.. ++++ .-|++|..|+.+.+... .+..+. ... ...+.++..+.| .++|+..
T Consensus 119 YVkcla~~ak~~~-lvaSgGLD~~IflWDin~~~~~-l~~s~n~~t~~sl~sG~k~siYSLA~N~t~------t~ivsGg 190 (735)
T KOG0308|consen 119 YVKCLAYIAKNNE-LVASGGLDRKIFLWDINTGTAT-LVASFNNVTVNSLGSGPKDSIYSLAMNQTG------TIIVSGG 190 (735)
T ss_pred hheeeeecccCce-eEEecCCCccEEEEEccCcchh-hhhhccccccccCCCCCccceeeeecCCcc------eEEEecC
Confidence 3445666 45544 5443 44889999999866310 011111 011 234778888888 8888754
Q ss_pred CCc-eEEEeCCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCe-EEE
Q 016199 153 YKG-LLKISGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKE-TKV 229 (393)
Q Consensus 153 ~~g-l~~id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~-~~~ 229 (393)
-.+ |..+|+.. .+... ..|.. ..+..+.+++||+-.++. +..|.|-.+|....+ +.+
T Consensus 191 tek~lr~wDprt~~kimk--LrGHT-dNVr~ll~~dDGt~~ls~-----------------sSDgtIrlWdLgqQrCl~T 250 (735)
T KOG0308|consen 191 TEKDLRLWDPRTCKKIMK--LRGHT-DNVRVLLVNDDGTRLLSA-----------------SSDGTIRLWDLGQQRCLAT 250 (735)
T ss_pred cccceEEeccccccceee--eeccc-cceEEEEEcCCCCeEeec-----------------CCCceEEeeeccccceeee
Confidence 444 55568765 32221 11221 235578899999666663 334555556653221 111
Q ss_pred EecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCc
Q 016199 230 LVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEF 302 (393)
Q Consensus 230 ~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r 302 (393)
+.-.-.....+..+++-..+|..++ .+.|++-++... ......+.+..|-.--....+ +..+|+++..+.
T Consensus 251 ~~vH~e~VWaL~~~~sf~~vYsG~r-d~~i~~Tdl~n~-~~~tlick~daPv~~l~~~~~-~~~~WvtTtds~ 320 (735)
T KOG0308|consen 251 YIVHKEGVWALQSSPSFTHVYSGGR-DGNIYRTDLRNP-AKSTLICKEDAPVLKLHLHEH-DNSVWVTTTDSS 320 (735)
T ss_pred EEeccCceEEEeeCCCcceEEecCC-CCcEEecccCCc-hhheEeecCCCchhhhhhccc-cCCceeeecccc
Confidence 2111111344555566667777665 567888887643 122233332222111112222 233688877653
No 274
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=90.09 E-value=19 Score=34.93 Aligned_cols=188 Identities=7% Similarity=0.087 Sum_probs=96.3
Q ss_pred eEEEecCCCEEEEEecCCeEEEEEcCCCC---Ccceeeeeec-CCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCC
Q 016199 87 DLLYDAHSKLIYTGCEDGWIKRVTLNDSP---ADSLVHNWIN-TGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGN 162 (393)
Q Consensus 87 ~ia~d~~g~~L~~~~~~g~I~~~~~~~~~---~~~~~~~~~~-~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~ 162 (393)
.|-|+.+++.|..|..+-++..|+.+.-- ..+-+....+ .......++|+..+ ..+|-+.....+...|..
T Consensus 61 AlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N-----~~~~SG~~~~~VI~HDiE 135 (609)
T KOG4227|consen 61 ALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLEN-----RFLYSGERWGTVIKHDIE 135 (609)
T ss_pred eeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCC-----eeEecCCCcceeEeeecc
Confidence 46688888755555455567777665321 0000111111 12345789998765 145666445556666655
Q ss_pred c-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCe----EEEEecCccCC
Q 016199 163 S-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKE----TKVLVSDLYFA 237 (393)
Q Consensus 163 g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~----~~~~~~~l~~~ 237 (393)
. .++....-+. .-..+.++.+.|-.++++.. +..++|..+|..... .-.++..-..-
T Consensus 136 t~qsi~V~~~~~-~~~~VY~m~~~P~DN~~~~~-----------------t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F 197 (609)
T KOG4227|consen 136 TKQSIYVANENN-NRGDVYHMDQHPTDNTLIVV-----------------TRAKLVSFIDNRDRQNPISLVLPANSGKNF 197 (609)
T ss_pred cceeeeeecccC-cccceeecccCCCCceEEEE-----------------ecCceEEEEeccCCCCCCceeeecCCCccc
Confidence 5 2222111111 11235577788866665553 345678888754322 22222222223
Q ss_pred CcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeee-ccCCCCCC------eEEECCCCCEEEEEec
Q 016199 238 NGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFI-ETLPGLPD------NIRYDGEGHYLIALAT 300 (393)
Q Consensus 238 ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~-~~l~g~P~------~i~~d~~G~lwva~~~ 300 (393)
+.+.|.|..-.|+.+....+++-.|+...+. ..++. ....++|. ++.+.++|+-+++...
T Consensus 198 ~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~---~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR 264 (609)
T KOG4227|consen 198 YTAEFHPETPALILVNSETGGPNVFDRRMQA---RPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR 264 (609)
T ss_pred eeeeecCCCceeEEeccccCCCCceeecccc---chHHhhhccccCcccchhhhheeeCCCCCeehhhhc
Confidence 4566777766677777777888888874321 11111 01123333 3566777777776553
No 275
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=90.00 E-value=1.2 Score=28.63 Aligned_cols=41 Identities=22% Similarity=0.328 Sum_probs=29.0
Q ss_pred CcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE-EecCccCCCcEEEcC
Q 016199 188 GMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV-LVSDLYFANGVVLSP 244 (393)
Q Consensus 188 G~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~-~~~~l~~~ngi~~s~ 244 (393)
|+||++|.+.+ -.+.+-+.++...+. +..++..|+||++++
T Consensus 1 ~~iYWtD~~~~----------------~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQD----------------PSIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTT----------------EEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred CEEEEEECCCC----------------cEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 57899985431 268888877665444 456789999999864
No 276
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=89.92 E-value=13 Score=35.88 Aligned_cols=143 Identities=11% Similarity=0.060 Sum_probs=81.8
Q ss_pred CceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeec-CCCceeeeEECCCCCCCCceEEEEEeCCCceEEEe-C
Q 016199 85 PEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWIN-TGGRPLGIAFANSDPDADRITMIVADAYKGLLKIS-G 161 (393)
Q Consensus 85 Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~-~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id-~ 161 (393)
-.+|.+.+||..|..++. +..|..|+++++. -..... ..++..-+.+.||| ..+++..-.+++++= .
T Consensus 198 Vtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~----~~pL~~~glgg~slLkwSPdg------d~lfaAt~davfrlw~e 267 (445)
T KOG2139|consen 198 VTSMQWNEDGTILVTASFGSSSIMIWDPDTGQ----KIPLIPKGLGGFSLLKWSPDG------DVLFAATCDAVFRLWQE 267 (445)
T ss_pred eeEEEEcCCCCEEeecccCcceEEEEcCCCCC----cccccccCCCceeeEEEcCCC------CEEEEecccceeeeehh
Confidence 356889999986666655 4578889998775 222221 12345567899999 777776767777663 2
Q ss_pred C-c--eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCC-----------e
Q 016199 162 N-S--TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTK-----------E 226 (393)
Q Consensus 162 ~-g--~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~-----------~ 226 (393)
. . .+.... ..| .+..-..+|+| .|.|+.+++ -+||+..-..+ +
T Consensus 268 ~q~wt~erw~l-gsg----rvqtacWspcGsfLLf~~sgs-----------------p~lysl~f~~~~~~~~~~~~~k~ 325 (445)
T KOG2139|consen 268 NQSWTKERWIL-GSG----RVQTACWSPCGSFLLFACSGS-----------------PRLYSLTFDGEDSVFLRPQSIKR 325 (445)
T ss_pred cccceecceec-cCC----ceeeeeecCCCCEEEEEEcCC-----------------ceEEEEeecCCCccccCccccee
Confidence 2 1 111111 111 34455789999 566765332 23444322111 1
Q ss_pred EEEEec--------C----ccCCCcEEEcCCCCEEEEEeCCCCeE
Q 016199 227 TKVLVS--------D----LYFANGVVLSPDQTHLVYCETSMRRC 259 (393)
Q Consensus 227 ~~~~~~--------~----l~~~ngi~~s~dg~~l~v~~~~~~ri 259 (393)
....++ + -..+..++++|.|+++.|.--...+|
T Consensus 326 ~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v 370 (445)
T KOG2139|consen 326 VLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFV 370 (445)
T ss_pred eeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchh
Confidence 111111 1 23567899999999888776655543
No 277
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=89.41 E-value=11 Score=39.05 Aligned_cols=144 Identities=14% Similarity=0.098 Sum_probs=76.8
Q ss_pred EEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCceEEE
Q 016199 88 LLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNSTVLL 167 (393)
Q Consensus 88 ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g~~~l 167 (393)
++.-+++ .+.+|+.|..|..|..+ .. ...+........|+++-+++ .+.-|+.++-|..++.+|...+
T Consensus 146 v~~l~e~-~~vTgsaDKtIklWk~~-~~----l~tf~gHtD~VRgL~vl~~~------~flScsNDg~Ir~w~~~ge~l~ 213 (745)
T KOG0301|consen 146 VASLPEN-TYVTGSADKTIKLWKGG-TL----LKTFSGHTDCVRGLAVLDDS------HFLSCSNDGSIRLWDLDGEVLL 213 (745)
T ss_pred eeecCCC-cEEeccCcceeeeccCC-ch----hhhhccchhheeeeEEecCC------CeEeecCCceEEEEeccCceee
Confidence 3444555 46677778777777643 22 44443334557889888876 6777765555666787771111
Q ss_pred eeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCC
Q 016199 168 TDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQT 247 (393)
Q Consensus 168 ~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~ 247 (393)
+..|.. +++..+....++.+.++. ...+.+-.++.+ .-...+.-.-.....+.+-++|+
T Consensus 214 --~~~ght-n~vYsis~~~~~~~Ivs~-----------------gEDrtlriW~~~-e~~q~I~lPttsiWsa~~L~NgD 272 (745)
T KOG0301|consen 214 --EMHGHT-NFVYSISMALSDGLIVST-----------------GEDRTLRIWKKD-ECVQVITLPTTSIWSAKVLLNGD 272 (745)
T ss_pred --eeeccc-eEEEEEEecCCCCeEEEe-----------------cCCceEEEeecC-ceEEEEecCccceEEEEEeeCCC
Confidence 112221 456677766666677774 222334444432 11111111111122344445664
Q ss_pred EEEEEeCCCCeEEEEEecC
Q 016199 248 HLVYCETSMRRCRKFYIKG 266 (393)
Q Consensus 248 ~l~v~~~~~~ri~~~~~~g 266 (393)
+++ ....++|+.|..+.
T Consensus 273 -Ivv-g~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 273 -IVV-GGSDGRVRVFTVDK 289 (745)
T ss_pred -EEE-eccCceEEEEEecc
Confidence 444 44578888888763
No 278
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=89.35 E-value=0.44 Score=26.70 Aligned_cols=18 Identities=11% Similarity=0.174 Sum_probs=14.6
Q ss_pred cccccEEEcCCCcEEEEe
Q 016199 177 KLTDGVDVADDGMIYFTD 194 (393)
Q Consensus 177 ~~~~~l~~d~dG~l~~td 194 (393)
..+.+|..|++|+|||+.
T Consensus 5 n~I~~i~~D~~G~lWigT 22 (24)
T PF07494_consen 5 NNIYSIYEDSDGNLWIGT 22 (24)
T ss_dssp SCEEEEEE-TTSCEEEEE
T ss_pred CeEEEEEEcCCcCEEEEe
Confidence 457789999999999985
No 279
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=89.26 E-value=14 Score=38.76 Aligned_cols=196 Identities=14% Similarity=0.138 Sum_probs=92.8
Q ss_pred cCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCc-eEEEe
Q 016199 82 LKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKG-LLKIS 160 (393)
Q Consensus 82 ~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g-l~~id 160 (393)
-.|-.+++++|+|++|-.|+..|.|..+++..... ...+.......+.+.+...- .. ++|+.....+. |..+|
T Consensus 459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~---~~~~eAHesEilcLeyS~p~--~~-~kLLASasrdRlIHV~D 532 (1080)
T KOG1408|consen 459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY---TCFMEAHESEILCLEYSFPV--LT-NKLLASASRDRLIHVYD 532 (1080)
T ss_pred ccceEEEEECCCcceecccCccCceEEEEehhhhh---hhheecccceeEEEeecCch--hh-hHhhhhccCCceEEEEe
Confidence 36778899999999998888888888888765320 11122223345555554311 00 13433323222 44455
Q ss_pred CCceEEEeeccCCccccccccEEEcCCC--cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCC
Q 016199 161 GNSTVLLTDEAEGQKFKLTDGVDVADDG--MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFAN 238 (393)
Q Consensus 161 ~~g~~~l~~~~~g~~~~~~~~l~~d~dG--~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~n 238 (393)
..-.-.+....++.. ..+..|.+...| .-.++....+ .-++......+.|+++--...+-.. ..-.
T Consensus 533 v~rny~l~qtld~HS-ssITsvKFa~~gln~~MiscGADk----simFr~~qk~~~g~~f~r~t~t~~k-------tTlY 600 (1080)
T KOG1408|consen 533 VKRNYDLVQTLDGHS-SSITSVKFACNGLNRKMISCGADK----SIMFRVNQKASSGRLFPRHTQTLSK-------TTLY 600 (1080)
T ss_pred cccccchhhhhcccc-cceeEEEEeecCCceEEEeccCch----hhheehhccccCceecccccccccc-------ceEE
Confidence 432001111222221 234455554443 2223321110 0111112223334444332222111 1235
Q ss_pred cEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeecc--CCCCCCeEEECCCCCEEEEEe
Q 016199 239 GVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIET--LPGLPDNIRYDGEGHYLIALA 299 (393)
Q Consensus 239 gi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~--l~g~P~~i~~d~~G~lwva~~ 299 (393)
.++++|.-+.+ ++..-...|..|++... .+.+.|... ..|-+--+..|+.|. |+++.
T Consensus 601 Dm~Vdp~~k~v-~t~cQDrnirif~i~sg--Kq~k~FKgs~~~eG~lIKv~lDPSgi-Y~atS 659 (1080)
T KOG1408|consen 601 DMAVDPTSKLV-VTVCQDRNIRIFDIESG--KQVKSFKGSRDHEGDLIKVILDPSGI-YLATS 659 (1080)
T ss_pred EeeeCCCcceE-EEEecccceEEEecccc--ceeeeecccccCCCceEEEEECCCcc-EEEEe
Confidence 67788877544 44445667888998632 234445421 224445577899995 55544
No 280
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=89.17 E-value=23 Score=36.92 Aligned_cols=135 Identities=10% Similarity=0.115 Sum_probs=74.0
Q ss_pred eEEEEEcCCCCCcceeeeeecCC--CceeeeEECCCCCCCCceEEEEEeCCCc------eEEEeCCc-e-EEEeeccCCc
Q 016199 105 WIKRVTLNDSPADSLVHNWINTG--GRPLGIAFANSDPDADRITMIVADAYKG------LLKISGNS-T-VLLTDEAEGQ 174 (393)
Q Consensus 105 ~I~~~~~~~~~~~~~~~~~~~~~--~~p~gl~~d~~G~~~~~~~L~v~~~~~g------l~~id~~g-~-~~l~~~~~g~ 174 (393)
.+.+||+..++ +....... ..-.+++.- +| .||+.....| +-++|+.. . +..+....
T Consensus 350 ~ve~YD~~~~~----W~~~a~M~~~R~~~~v~~l-~g------~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-- 416 (571)
T KOG4441|consen 350 SVERYDPRTNQ----WTPVAPMNTKRSDFGVAVL-DG------KLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-- 416 (571)
T ss_pred eEEEecCCCCc----eeccCCccCccccceeEEE-CC------EEEEEeccccccccccEEEecCCCCcccccCCCCc--
Confidence 57888888766 66544321 112455543 57 8888755443 66777765 1 11111111
Q ss_pred cccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC--ccCCCcEEEcCCCCEEEEE
Q 016199 175 KFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD--LYFANGVVLSPDQTHLVYC 252 (393)
Q Consensus 175 ~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~--l~~~ngi~~s~dg~~l~v~ 252 (393)
.+.-.++++ -+|.||+.-.... ....-..+.+|||.+++.+.+..- -..-.|++.. ++ .||+.
T Consensus 417 -~r~~~gv~~-~~g~iYi~GG~~~-----------~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~-~~-~iYvv 481 (571)
T KOG4441|consen 417 -RRSGHGVAV-LGGKLYIIGGGDG-----------SSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL-NG-KIYVV 481 (571)
T ss_pred -ceeeeEEEE-ECCEEEEEcCcCC-----------CccccceEEEEcCCCCceeecCCcccccccceEEEE-CC-EEEEE
Confidence 122234332 3789998732110 001235799999999998876432 1223445543 33 78887
Q ss_pred eCCCC-----eEEEEEecCC
Q 016199 253 ETSMR-----RCRKFYIKGK 267 (393)
Q Consensus 253 ~~~~~-----ri~~~~~~g~ 267 (393)
...++ .+-+|++..+
T Consensus 482 GG~~~~~~~~~VE~ydp~~~ 501 (571)
T KOG4441|consen 482 GGFDGTSALSSVERYDPETN 501 (571)
T ss_pred CCccCCCccceEEEEcCCCC
Confidence 75443 4778887543
No 281
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=89.05 E-value=22 Score=36.10 Aligned_cols=76 Identities=17% Similarity=0.217 Sum_probs=52.6
Q ss_pred cEEEEEeCCCCeEEEEecCccCCCcEEEcCCCC-EEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCe-EEECCCC
Q 016199 215 GRLLSFDPVTKETKVLVSDLYFANGVVLSPDQT-HLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDN-IRYDGEG 292 (393)
Q Consensus 215 g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~-~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~-i~~d~~G 292 (393)
..||.++.++....+-+....-.+.+.++++++ +.+|-+..-..+..|+++++- .. .+|.-|.| +.+++.|
T Consensus 251 q~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~------v~-df~egpRN~~~fnp~g 323 (566)
T KOG2315|consen 251 QTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP------VF-DFPEGPRNTAFFNPHG 323 (566)
T ss_pred ceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE------eE-eCCCCCccceEECCCC
Confidence 368888877555555555566679999999986 556666667789999987641 22 23434655 6789999
Q ss_pred CEEEE
Q 016199 293 HYLIA 297 (393)
Q Consensus 293 ~lwva 297 (393)
+|.+-
T Consensus 324 ~ii~l 328 (566)
T KOG2315|consen 324 NIILL 328 (566)
T ss_pred CEEEE
Confidence 96643
No 282
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=88.78 E-value=11 Score=36.67 Aligned_cols=109 Identities=7% Similarity=0.118 Sum_probs=62.6
Q ss_pred eeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheeh
Q 016199 130 PLGIAFANSDPDADRITMIVADAYKGLLKISGNS--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILD 207 (393)
Q Consensus 130 p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~ 207 (393)
...+...++| ++|.+|...+.+-..+..+ ++.+.... . ..+..+....+|+-.++-
T Consensus 99 V~~v~WtPeG-----RRLltgs~SGEFtLWNg~~fnFEtilQaH-D---s~Vr~m~ws~~g~wmiSg------------- 156 (464)
T KOG0284|consen 99 VNVVRWTPEG-----RRLLTGSQSGEFTLWNGTSFNFETILQAH-D---SPVRTMKWSHNGTWMISG------------- 156 (464)
T ss_pred eeeEEEcCCC-----ceeEeecccccEEEecCceeeHHHHhhhh-c---ccceeEEEccCCCEEEEc-------------
Confidence 5678889999 3688885444455555433 22221111 1 124467888888766652
Q ss_pred hcccCCCcEEEEEeCCCCeEEEEec-CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199 208 IFEGKPNGRLLSFDPVTKETKVLVS-DLYFANGVVLSPDQTHLVYCETSMRRCRKFYIK 265 (393)
Q Consensus 208 ~~e~~~~g~l~~~d~~t~~~~~~~~-~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~ 265 (393)
...|-|-.+++.-..+..... .-....+++++|.. ..+++.+..++|..++..
T Consensus 157 ----D~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~ 210 (464)
T KOG0284|consen 157 ----DKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFR 210 (464)
T ss_pred ----CCCceEEecccchhhhHHhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEecc
Confidence 223334444554333322211 12346789999854 677888888999888864
No 283
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=88.76 E-value=19 Score=35.07 Aligned_cols=99 Identities=7% Similarity=0.074 Sum_probs=56.6
Q ss_pred CCceeeeEECCCCCCCCceEEEEEeCCCc-eEEEeCC--------c-----eE-EEeeccCCccccccccEEEcCCCcEE
Q 016199 127 GGRPLGIAFANSDPDADRITMIVADAYKG-LLKISGN--------S-----TV-LLTDEAEGQKFKLTDGVDVADDGMIY 191 (393)
Q Consensus 127 ~~~p~gl~~d~~G~~~~~~~L~v~~~~~g-l~~id~~--------g-----~~-~l~~~~~g~~~~~~~~l~~d~dG~l~ 191 (393)
....+.+.|+++| +++....+.| ++.+-.. + .+ .+..........-+-+++..+|++..
T Consensus 65 ~~aVN~vRf~p~g------elLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l 138 (434)
T KOG1009|consen 65 TRAVNVVRFSPDG------ELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFL 138 (434)
T ss_pred cceeEEEEEcCCc------CeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCcee
Confidence 3457899999999 8877655555 3332211 1 00 00000001011234567778888665
Q ss_pred EEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec-CccCCCcEEEcCCCCE
Q 016199 192 FTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS-DLYFANGVVLSPDQTH 248 (393)
Q Consensus 192 ~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~-~l~~~ngi~~s~dg~~ 248 (393)
++. .....++.+|...|.+....+ .-.+++|++++|-+++
T Consensus 139 ~s~-----------------s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qy 179 (434)
T KOG1009|consen 139 VSG-----------------SVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQY 179 (434)
T ss_pred eee-----------------eccceEEEEEeccceeEeeccccccccceeecchhhhh
Confidence 552 234467888877777665443 4577899998887653
No 284
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=88.68 E-value=26 Score=34.53 Aligned_cols=242 Identities=13% Similarity=0.116 Sum_probs=114.4
Q ss_pred EEEecCCCEEEEEe-cCC----eEEEEEcCCCCCcceee-eeecCCCceeeeEECCCCCCCCceEEEEEeCCC-------
Q 016199 88 LLYDAHSKLIYTGC-EDG----WIKRVTLNDSPADSLVH-NWINTGGRPLGIAFANSDPDADRITMIVADAYK------- 154 (393)
Q Consensus 88 ia~d~~g~~L~~~~-~~g----~I~~~~~~~~~~~~~~~-~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~------- 154 (393)
+.++|+|+++.++. .+| .|+.++.+++. .+. .+.. ....++.+.++| ..+|......
T Consensus 129 ~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~---~l~d~i~~--~~~~~~~W~~d~-----~~~~y~~~~~~~~~~~~ 198 (414)
T PF02897_consen 129 FSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGK---FLPDGIEN--PKFSSVSWSDDG-----KGFFYTRFDEDQRTSDS 198 (414)
T ss_dssp EEETTTSSEEEEEEEETTSSEEEEEEEETTTTE---EEEEEEEE--EESEEEEECTTS-----SEEEEEECSTTTSS-CC
T ss_pred eeECCCCCEEEEEecCCCCceEEEEEEECCCCc---CcCCcccc--cccceEEEeCCC-----CEEEEEEeCcccccccC
Confidence 56888998665543 344 47788887764 111 1111 112238888876 1343332221
Q ss_pred ----ceEEEeCCc--e--EEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCC-
Q 016199 155 ----GLLKISGNS--T--VLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTK- 225 (393)
Q Consensus 155 ----gl~~id~~g--~--~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~- 225 (393)
.|++..... . ..+....++ .+ ..-++..++||...+-....+ .....++.++...+
T Consensus 199 ~~~~~v~~~~~gt~~~~d~lvfe~~~~-~~-~~~~~~~s~d~~~l~i~~~~~-------------~~~s~v~~~d~~~~~ 263 (414)
T PF02897_consen 199 GYPRQVYRHKLGTPQSEDELVFEEPDE-PF-WFVSVSRSKDGRYLFISSSSG-------------TSESEVYLLDLDDGG 263 (414)
T ss_dssp GCCEEEEEEETTS-GGG-EEEEC-TTC-TT-SEEEEEE-TTSSEEEEEEESS-------------SSEEEEEEEECCCTT
T ss_pred CCCcEEEEEECCCChHhCeeEEeecCC-Cc-EEEEEEecCcccEEEEEEEcc-------------ccCCeEEEEeccccC
Confidence 255555433 1 222222221 11 133677888885444322211 11256888888754
Q ss_pred ----eEEEEecCccCCCcEEEcCCCCEEEE-EeC--CCCeEEEEEecCCCCccee-eeeccCCC-CCCeEEECCCCCEEE
Q 016199 226 ----ETKVLVSDLYFANGVVLSPDQTHLVY-CET--SMRRCRKFYIKGKNAGRVE-KFIETLPG-LPDNIRYDGEGHYLI 296 (393)
Q Consensus 226 ----~~~~~~~~l~~~ngi~~s~dg~~l~v-~~~--~~~ri~~~~~~g~~~~~~~-~~~~~l~g-~P~~i~~d~~G~lwv 296 (393)
..+.+.......... +...++.+|+ ++. .+++|.+++++........ .+...... .-.++....+ .+.+
T Consensus 264 ~~~~~~~~l~~~~~~~~~~-v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~-~Lvl 341 (414)
T PF02897_consen 264 SPDAKPKLLSPREDGVEYY-VDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKD-YLVL 341 (414)
T ss_dssp TSS-SEEEEEESSSS-EEE-EEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETT-EEEE
T ss_pred CCcCCcEEEeCCCCceEEE-EEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECC-EEEE
Confidence 455554332211111 1122445555 432 2469999998754332222 33322111 2234444432 3333
Q ss_pred EEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCC-CcEEEEeeCCCCCccEEEEE--eCCEEEE--
Q 016199 297 ALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLD-GKPIAHYYDPEMSLISSAIK--IGDHLYC-- 371 (393)
Q Consensus 297 a~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~-g~~~~~~~d~~~~~~~~~~~--~~g~Lyi-- 371 (393)
...... ...|..++.+ +.....+..+....+..... ..+.+++
T Consensus 342 ~~~~~~--------------------------------~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ 389 (414)
T PF02897_consen 342 SYRENG--------------------------------SSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSY 389 (414)
T ss_dssp EEEETT--------------------------------EEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEE
T ss_pred EEEECC--------------------------------ccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEE
Confidence 333221 0247778888 88777777665433333331 2355544
Q ss_pred EecCC-CeEEEEeCCCCC
Q 016199 372 GSVHH-RGILHLDVNQHP 388 (393)
Q Consensus 372 gs~~~-~~i~~~~~~~~~ 388 (393)
+|+.. ..+.++|+....
T Consensus 390 ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 390 SSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EETTEEEEEEEEETTTTC
T ss_pred eCCCCCCEEEEEECCCCC
Confidence 44443 578888887654
No 285
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=88.32 E-value=25 Score=33.86 Aligned_cols=158 Identities=15% Similarity=0.155 Sum_probs=85.6
Q ss_pred CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC-CceEE--E
Q 016199 83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY-KGLLK--I 159 (393)
Q Consensus 83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~-~gl~~--i 159 (393)
.+-.++++-|.|+.+...++|..|..|+.+++. .+..+.....-..-++...|| .|+.+-.. ..|.. +
T Consensus 194 h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~---cv~t~~~h~ewvr~v~v~~DG------ti~As~s~dqtl~vW~~ 264 (406)
T KOG0295|consen 194 HGVSSVFFLPLGDHILSCSRDNTIKAWECDTGY---CVKTFPGHSEWVRMVRVNQDG------TIIASCSNDQTLRVWVV 264 (406)
T ss_pred cceeeEEEEecCCeeeecccccceeEEecccce---eEEeccCchHhEEEEEecCCe------eEEEecCCCceEEEEEe
Confidence 444557888888878777789899999888763 234443322334667777888 66555322 22222 2
Q ss_pred eCCc-eEEEee---ccCC---ccccccccEEE-cC--CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEE-
Q 016199 160 SGNS-TVLLTD---EAEG---QKFKLTDGVDV-AD--DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETK- 228 (393)
Q Consensus 160 d~~g-~~~l~~---~~~g---~~~~~~~~l~~-d~--dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~- 228 (393)
.... ..++.. .++- .+..+-.++.. .+ +|.=+.+. ++..+.+-.+|..++..-
T Consensus 265 ~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s----------------~SrDktIk~wdv~tg~cL~ 328 (406)
T KOG0295|consen 265 ATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGS----------------GSRDKTIKIWDVSTGMCLF 328 (406)
T ss_pred ccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEe----------------ecccceEEEEeccCCeEEE
Confidence 2110 001100 0000 00000001111 01 12222222 234456777888887543
Q ss_pred EEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecC
Q 016199 229 VLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKG 266 (393)
Q Consensus 229 ~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g 266 (393)
++........+++|+|.|++|+ +-..+..|..|+++.
T Consensus 329 tL~ghdnwVr~~af~p~Gkyi~-ScaDDktlrvwdl~~ 365 (406)
T KOG0295|consen 329 TLVGHDNWVRGVAFSPGGKYIL-SCADDKTLRVWDLKN 365 (406)
T ss_pred EEecccceeeeeEEcCCCeEEE-EEecCCcEEEEEecc
Confidence 3444567789999999998764 455678999999853
No 286
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=88.31 E-value=12 Score=37.92 Aligned_cols=114 Identities=11% Similarity=0.193 Sum_probs=56.2
Q ss_pred EEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCc---eeeeEECCCCCCCCceEEEEEeC------------
Q 016199 88 LLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGR---PLGIAFANSDPDADRITMIVADA------------ 152 (393)
Q Consensus 88 ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~---p~gl~~d~~G~~~~~~~L~v~~~------------ 152 (393)
+..-++|+ ++++.. ..+..++..++. +..+....+. -+.+...++| ++++..+
T Consensus 153 ~~~l~nG~-ll~~~~-~~~~e~D~~G~v----~~~~~l~~~~~~~HHD~~~l~nG------n~L~l~~~~~~~~~~~~~~ 220 (477)
T PF05935_consen 153 FKQLPNGN-LLIGSG-NRLYEIDLLGKV----IWEYDLPGGYYDFHHDIDELPNG------NLLILASETKYVDEDKDVD 220 (477)
T ss_dssp EEE-TTS--EEEEEB-TEEEEE-TT--E----EEEEE--TTEE-B-S-EEE-TTS-------EEEEEEETTEE-TS-EE-
T ss_pred eeEcCCCC-EEEecC-CceEEEcCCCCE----EEeeecCCcccccccccEECCCC------CEEEEEeecccccCCCCcc
Confidence 34455665 444443 567777777653 3334322211 3678888999 6555433
Q ss_pred --CCceEEEeCCc--eEEEe--eccC--------------------CccccccccEEEcC-CCcEEEEeCCCccchhhhe
Q 016199 153 --YKGLLKISGNS--TVLLT--DEAE--------------------GQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYI 205 (393)
Q Consensus 153 --~~gl~~id~~g--~~~l~--~~~~--------------------g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~ 205 (393)
...|+.+|++| +..+. +..+ +..-.++|++..++ ++.|+++.
T Consensus 221 ~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSs----------- 289 (477)
T PF05935_consen 221 TVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSS----------- 289 (477)
T ss_dssp --S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEE-----------
T ss_pred EecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEc-----------
Confidence 24588888777 33322 1110 11124678899988 67888874
Q ss_pred ehhcccCCCcEEEEEeCCCCeEEEE
Q 016199 206 LDIFEGKPNGRLLSFDPVTKETKVL 230 (393)
Q Consensus 206 ~~~~e~~~~g~l~~~d~~t~~~~~~ 230 (393)
.....|+++|..++++.-.
T Consensus 290 ------R~~s~V~~Id~~t~~i~Wi 308 (477)
T PF05935_consen 290 ------RHQSAVIKIDYRTGKIKWI 308 (477)
T ss_dssp ------TTT-EEEEEE-TTS-EEEE
T ss_pred ------CcceEEEEEECCCCcEEEE
Confidence 3345799999777776644
No 287
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.11 E-value=11 Score=38.04 Aligned_cols=153 Identities=12% Similarity=0.115 Sum_probs=84.4
Q ss_pred EEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCC--CceEEEEEeCCCceEEEeCC--
Q 016199 88 LLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDA--DRITMIVADAYKGLLKISGN-- 162 (393)
Q Consensus 88 ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~--~~~~L~v~~~~~gl~~id~~-- 162 (393)
|....+.+.||..-. ..+|+.++.+.+. .++.|... ....-+.+.+++.-+ ..+.-+||-...+|+++|+.
T Consensus 339 mL~~~dsnlil~~~~~~~~l~klDIE~GK---IVeEWk~~-~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~ 414 (644)
T KOG2395|consen 339 MLHRADSNLILMDGGEQDKLYKLDIERGK---IVEEWKFE-DDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQ 414 (644)
T ss_pred hhhccccceEeeCCCCcCcceeeecccce---eeeEeecc-CCcceeeccCCcchhcccccccEEeecCCceEEeccccc
Confidence 444555566665432 4579999988765 35555321 111111222221000 00135677778899999974
Q ss_pred ceEEEeeccCCcc---ccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccC-CC
Q 016199 163 STVLLTDEAEGQK---FKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYF-AN 238 (393)
Q Consensus 163 g~~~l~~~~~g~~---~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~-~n 238 (393)
|...+. ..++.. -+.-+.++...+|.|.++ +..|.|--||.-..+..+...++.- ..
T Consensus 415 ~~~kl~-~~q~kqy~~k~nFsc~aTT~sG~Ivvg------------------S~~GdIRLYdri~~~AKTAlPgLG~~I~ 475 (644)
T KOG2395|consen 415 GKNKLA-VVQSKQYSTKNNFSCFATTESGYIVVG------------------SLKGDIRLYDRIGRRAKTALPGLGDAIK 475 (644)
T ss_pred Ccceee-eeeccccccccccceeeecCCceEEEe------------------ecCCcEEeehhhhhhhhhcccccCCcee
Confidence 321221 111111 122345677788988888 3456677788755555556666654 47
Q ss_pred cEEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199 239 GVVLSPDQTHLVYCETSMRRCRKFYIK 265 (393)
Q Consensus 239 gi~~s~dg~~l~v~~~~~~ri~~~~~~ 265 (393)
+|.++.||++|+.+ ....|...+..
T Consensus 476 hVdvtadGKwil~T--c~tyLlLi~t~ 500 (644)
T KOG2395|consen 476 HVDVTADGKWILAT--CKTYLLLIDTL 500 (644)
T ss_pred eEEeeccCcEEEEe--cccEEEEEEEe
Confidence 89999999876443 34556665543
No 288
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=87.79 E-value=24 Score=33.14 Aligned_cols=71 Identities=14% Similarity=0.180 Sum_probs=46.1
Q ss_pred eEEEec-CCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc
Q 016199 87 DLLYDA-HSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS 163 (393)
Q Consensus 87 ~ia~d~-~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g 163 (393)
+++|+| ....+-.++.|+.|..|+.+... ...-+......+-++.+++..+|. +++.+..++.+-.+|...
T Consensus 32 ~l~FSP~~~~~~~A~SWD~tVR~wevq~~g-~~~~ka~~~~~~PvL~v~Wsddgs-----kVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 32 ALAFSPQADNLLAAGSWDGTVRIWEVQNSG-QLVPKAQQSHDGPVLDVCWSDDGS-----KVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred eeEeccccCceEEecccCCceEEEEEecCC-cccchhhhccCCCeEEEEEccCCc-----eEEeeccCCceEEEEccC
Confidence 378888 44444477889988888876521 100111223356679999999982 678887777777788654
No 289
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=87.59 E-value=41 Score=35.55 Aligned_cols=181 Identities=14% Similarity=0.160 Sum_probs=98.3
Q ss_pred CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCC
Q 016199 83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGN 162 (393)
Q Consensus 83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~ 162 (393)
.--.+++++.+.. +..+..++.|..|+.++.+ ...++. ++-.++-.|-+.+ +.+.+|.-.+-+..+|..
T Consensus 374 ~dVRsl~vS~d~~-~~~Sga~~SikiWn~~t~k---ciRTi~--~~y~l~~~Fvpgd-----~~Iv~G~k~Gel~vfdla 442 (888)
T KOG0306|consen 374 SDVRSLCVSSDSI-LLASGAGESIKIWNRDTLK---CIRTIT--CGYILASKFVPGD-----RYIVLGTKNGELQVFDLA 442 (888)
T ss_pred hheeEEEeecCce-eeeecCCCcEEEEEccCcc---eeEEec--cccEEEEEecCCC-----ceEEEeccCCceEEEEee
Confidence 4456688887764 4444446678888887643 233332 4566777777766 134555333446677654
Q ss_pred c---eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeC-------CCC-e-EEEE
Q 016199 163 S---TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDP-------VTK-E-TKVL 230 (393)
Q Consensus 163 g---~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~-------~t~-~-~~~~ 230 (393)
. .+.+. ..+| .+..++..|||.=+++-+ +...|..||. .+. + +...
T Consensus 443 S~~l~Eti~-AHdg----aIWsi~~~pD~~g~vT~s-----------------aDktVkfWdf~l~~~~~gt~~k~lsl~ 500 (888)
T KOG0306|consen 443 SASLVETIR-AHDG----AIWSISLSPDNKGFVTGS-----------------ADKTVKFWDFKLVVSVPGTQKKVLSLK 500 (888)
T ss_pred hhhhhhhhh-cccc----ceeeeeecCCCCceEEec-----------------CCcEEEEEeEEEEeccCcccceeeeec
Confidence 3 22221 1122 245677788876555532 1222222221 111 1 1110
Q ss_pred e-cCccC---CCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCC--CC-CeEEECCCCCEEEEEecCcc
Q 016199 231 V-SDLYF---ANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPG--LP-DNIRYDGEGHYLIALATEFS 303 (393)
Q Consensus 231 ~-~~l~~---~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g--~P-~~i~~d~~G~lwva~~~~r~ 303 (393)
. +.+.. .-.+.+||||++|-|+ -.++++-.|.++.-+ -|. .+-| +| -.+-+++|+.+.++....++
T Consensus 501 ~~rtLel~ddvL~v~~Spdgk~LaVs-LLdnTVkVyflDtlK-----Ffl-sLYGHkLPV~smDIS~DSklivTgSADKn 573 (888)
T KOG0306|consen 501 HTRTLELEDDVLCVSVSPDGKLLAVS-LLDNTVKVYFLDTLK-----FFL-SLYGHKLPVLSMDISPDSKLIVTGSADKN 573 (888)
T ss_pred cceEEeccccEEEEEEcCCCcEEEEE-eccCeEEEEEeccee-----eee-eecccccceeEEeccCCcCeEEeccCCCc
Confidence 0 11223 3457799999876554 468899999987432 122 2222 23 45667888999888776654
No 290
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=87.39 E-value=24 Score=32.52 Aligned_cols=62 Identities=15% Similarity=0.161 Sum_probs=33.6
Q ss_pred ecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc
Q 016199 91 DAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS 163 (393)
Q Consensus 91 d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g 163 (393)
+..++.||+|+.+| |+.++...... ....... .....|..-++- ++.+.-+++.++.++.+.
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~---~~~i~~~-~~I~ql~vl~~~------~~llvLsd~~l~~~~L~~ 65 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSK---PTRILKL-SSITQLSVLPEL------NLLLVLSDGQLYVYDLDS 65 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCcc---ceeEeec-ceEEEEEEeccc------CEEEEEcCCccEEEEchh
Confidence 44567899998887 88888732210 2222211 224555555543 333333456677666543
No 291
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=86.95 E-value=31 Score=33.43 Aligned_cols=105 Identities=11% Similarity=0.130 Sum_probs=65.4
Q ss_pred EecCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC-Cc
Q 016199 77 VGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY-KG 155 (393)
Q Consensus 77 l~~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~-~g 155 (393)
..+|...--.++.|++.+ .+|.++.|..|.+||...+. ...-......-+.+...+.- +|+++... ..
T Consensus 255 tl~GHt~~Vs~V~w~d~~-v~yS~SwDHTIk~WDletg~----~~~~~~~~ksl~~i~~~~~~------~Ll~~gssdr~ 323 (423)
T KOG0313|consen 255 TLEGHTEPVSSVVWSDAT-VIYSVSWDHTIKVWDLETGG----LKSTLTTNKSLNCISYSPLS------KLLASGSSDRH 323 (423)
T ss_pred EecccccceeeEEEcCCC-ceEeecccceEEEEEeeccc----ceeeeecCcceeEeeccccc------ceeeecCCCCc
Confidence 445655556678888865 69999999999999998765 22211223345677777776 77777554 44
Q ss_pred eEEEeCCc--eEEEeeccCCccccccccEEEcCCCc-EEEE
Q 016199 156 LLKISGNS--TVLLTDEAEGQKFKLTDGVDVADDGM-IYFT 193 (393)
Q Consensus 156 l~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~dG~-l~~t 193 (393)
|..+||.. -......+-|.. +++.++...|... ++++
T Consensus 324 irl~DPR~~~gs~v~~s~~gH~-nwVssvkwsp~~~~~~~S 363 (423)
T KOG0313|consen 324 IRLWDPRTGDGSVVSQSLIGHK-NWVSSVKWSPTNEFQLVS 363 (423)
T ss_pred eeecCCCCCCCceeEEeeecch-hhhhheecCCCCceEEEE
Confidence 66668743 222222333433 4677888888774 4444
No 292
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=86.65 E-value=40 Score=34.37 Aligned_cols=128 Identities=13% Similarity=0.112 Sum_probs=72.5
Q ss_pred EEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEE----CCCCCCCCceEEEEEeCCCceEEEeCCceEEEeecc
Q 016199 96 LIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAF----ANSDPDADRITMIVADAYKGLLKISGNSTVLLTDEA 171 (393)
Q Consensus 96 ~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~----d~~G~~~~~~~L~v~~~~~gl~~id~~g~~~l~~~~ 171 (393)
.+..|+..|.|+.++..+++ +......+..+..+.. +.-| .||-+++...+..++......+....
T Consensus 72 ~lvlgt~~g~v~~ys~~~g~----it~~~st~~h~~~v~~~~~~~~~~------ciyS~~ad~~v~~~~~~~~~~~~~~~ 141 (541)
T KOG4547|consen 72 MLVLGTPQGSVLLYSVAGGE----ITAKLSTDKHYGNVNEILDAQRLG------CIYSVGADLKVVYILEKEKVIIRIWK 141 (541)
T ss_pred EEEeecCCccEEEEEecCCe----EEEEEecCCCCCcceeeecccccC------ceEecCCceeEEEEecccceeeeeec
Confidence 56677788888888887765 5544333333322222 1234 56776666667777765411222222
Q ss_pred CCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCcc-CCCcEEEcCC-----
Q 016199 172 EGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLY-FANGVVLSPD----- 245 (393)
Q Consensus 172 ~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~-~~ngi~~s~d----- 245 (393)
.+.+ .+-.+++.+||.+..+ +.+.|-.||.+++++-...++.. ..+.+++..+
T Consensus 142 ~~~~--~~~sl~is~D~~~l~~-------------------as~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~ 200 (541)
T KOG4547|consen 142 EQKP--LVSSLCISPDGKILLT-------------------ASRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGII 200 (541)
T ss_pred cCCC--ccceEEEcCCCCEEEe-------------------ccceEEEEEccCceEEEEecCCCcceEEEEEEEeccccc
Confidence 2222 3558899999977765 23468888888887655544433 3355555544
Q ss_pred CCEEEEEeC
Q 016199 246 QTHLVYCET 254 (393)
Q Consensus 246 g~~l~v~~~ 254 (393)
|++++-+..
T Consensus 201 G~~vLssa~ 209 (541)
T KOG4547|consen 201 GKYVLSSAA 209 (541)
T ss_pred cceeeeccc
Confidence 555544443
No 293
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=86.37 E-value=30 Score=32.62 Aligned_cols=149 Identities=14% Similarity=0.055 Sum_probs=82.3
Q ss_pred CceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEE-eCCCceEEEeCCc
Q 016199 85 PEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVA-DAYKGLLKISGNS 163 (393)
Q Consensus 85 Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~-~~~~gl~~id~~g 163 (393)
+-+++|..||..+|+|.-|+.+..|++.+++ +..+....+....+.+-+...+ .+++. .++.-|-.+|...
T Consensus 75 vL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q----~~~v~~Hd~pvkt~~wv~~~~~----~cl~TGSWDKTlKfWD~R~ 146 (347)
T KOG0647|consen 75 VLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ----VSQVAAHDAPVKTCHWVPGMNY----QCLVTGSWDKTLKFWDTRS 146 (347)
T ss_pred eEEEEEccCCceEEeeccCCceEEEEccCCC----eeeeeecccceeEEEEecCCCc----ceeEecccccceeecccCC
Confidence 4578999999999999999999999999887 6666544443344444332200 23333 3344455556543
Q ss_pred -eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeE--EEEecCccC-CC
Q 016199 164 -TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKET--KVLVSDLYF-AN 238 (393)
Q Consensus 164 -~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~--~~~~~~l~~-~n 238 (393)
..+..-...++-. +.|-.. -+.++ .....|..|+...+.. ......+.+ ..
T Consensus 147 ~~pv~t~~LPeRvY------a~Dv~~pm~vVa------------------ta~r~i~vynL~n~~te~k~~~SpLk~Q~R 202 (347)
T KOG0647|consen 147 SNPVATLQLPERVY------AADVLYPMAVVA------------------TAERHIAVYNLENPPTEFKRIESPLKWQTR 202 (347)
T ss_pred CCeeeeeeccceee------ehhccCceeEEE------------------ecCCcEEEEEcCCCcchhhhhcCcccceee
Confidence 1111111111111 111111 12222 2334588887754332 223333433 46
Q ss_pred cEEEcCCCCEEEEEeCCCCeEEEEEecC
Q 016199 239 GVVLSPDQTHLVYCETSMRRCRKFYIKG 266 (393)
Q Consensus 239 gi~~s~dg~~l~v~~~~~~ri~~~~~~g 266 (393)
.|++..|.+. +...+..+|+....++.
T Consensus 203 ~va~f~d~~~-~alGsiEGrv~iq~id~ 229 (347)
T KOG0647|consen 203 CVACFQDKDG-FALGSIEGRVAIQYIDD 229 (347)
T ss_pred EEEEEecCCc-eEeeeecceEEEEecCC
Confidence 7888777753 35566788998888864
No 294
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.17 E-value=17 Score=35.34 Aligned_cols=70 Identities=23% Similarity=0.300 Sum_probs=42.3
Q ss_pred cccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec--CccCCCcEEEcCCCCEEEEEeC
Q 016199 177 KLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS--DLYFANGVVLSPDQTHLVYCET 254 (393)
Q Consensus 177 ~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~--~l~~~ngi~~s~dg~~l~v~~~ 254 (393)
..+..++++.||++..-- +..|.|..|+..+=+.-.+.. ...+..+++|+||.+.+ .+-+
T Consensus 282 ~siSsl~VS~dGkf~AlG-----------------T~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~-~svS 343 (398)
T KOG0771|consen 282 KSISSLAVSDDGKFLALG-----------------TMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYL-ASVS 343 (398)
T ss_pred CcceeEEEcCCCcEEEEe-----------------ccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcc-cccc
Confidence 346789999999755321 446778899875433322222 34578999999998644 2233
Q ss_pred CCCeEEEEEe
Q 016199 255 SMRRCRKFYI 264 (393)
Q Consensus 255 ~~~ri~~~~~ 264 (393)
...+.....+
T Consensus 344 s~~~~~v~~l 353 (398)
T KOG0771|consen 344 SDNEAAVTKL 353 (398)
T ss_pred cCCceeEEEE
Confidence 3444444443
No 295
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.64 E-value=48 Score=34.38 Aligned_cols=151 Identities=13% Similarity=0.050 Sum_probs=90.4
Q ss_pred EecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCc-eEEEeCCceEEEe
Q 016199 90 YDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKG-LLKISGNSTVLLT 168 (393)
Q Consensus 90 ~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g-l~~id~~g~~~l~ 168 (393)
|-...+.+.+|+.|.+|..|+.++.. .++.|.....-...|+++|.. -..+..++.- |-.++-++.-...
T Consensus 63 fiaRknWiv~GsDD~~IrVfnynt~e---kV~~FeAH~DyIR~iavHPt~------P~vLtsSDDm~iKlW~we~~wa~~ 133 (794)
T KOG0276|consen 63 FIARKNWIVTGSDDMQIRVFNYNTGE---KVKTFEAHSDYIRSIAVHPTL------PYVLTSSDDMTIKLWDWENEWACE 133 (794)
T ss_pred eeeccceEEEecCCceEEEEecccce---eeEEeeccccceeeeeecCCC------CeEEecCCccEEEEeeccCceeee
Confidence 44556678889999999999887653 266676555667889999987 4445444443 3344655411122
Q ss_pred eccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCC
Q 016199 169 DEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQT 247 (393)
Q Consensus 169 ~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~ 247 (393)
..++|.. .++-.+++.|.. +-+++ ++. ..+-.||.+-...-.. ++.......|.|.+-+.|+
T Consensus 134 qtfeGH~-HyVMqv~fnPkD~ntFaS-~sL--------------DrTVKVWslgs~~~nf-Tl~gHekGVN~Vdyy~~gd 196 (794)
T KOG0276|consen 134 QTFEGHE-HYVMQVAFNPKDPNTFAS-ASL--------------DRTVKVWSLGSPHPNF-TLEGHEKGVNCVDYYTGGD 196 (794)
T ss_pred eEEcCcc-eEEEEEEecCCCccceee-eec--------------cccEEEEEcCCCCCce-eeeccccCcceEEeccCCC
Confidence 2345543 456788999865 55554 222 2344566554332222 2333455678888887765
Q ss_pred E-EEEEeCCCCeEEEEEecC
Q 016199 248 H-LVYCETSMRRCRKFYIKG 266 (393)
Q Consensus 248 ~-l~v~~~~~~ri~~~~~~g 266 (393)
. .+++......+-.||.+.
T Consensus 197 kpylIsgaDD~tiKvWDyQt 216 (794)
T KOG0276|consen 197 KPYLISGADDLTIKVWDYQT 216 (794)
T ss_pred cceEEecCCCceEEEeecch
Confidence 3 456666666777777654
No 296
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=85.02 E-value=36 Score=32.37 Aligned_cols=167 Identities=14% Similarity=0.129 Sum_probs=77.7
Q ss_pred EEEEEecCCeEEEEEcCCCCCcceeeeee---cCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCce--EEEeec
Q 016199 96 LIYTGCEDGWIKRVTLNDSPADSLVHNWI---NTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNST--VLLTDE 170 (393)
Q Consensus 96 ~L~~~~~~g~I~~~~~~~~~~~~~~~~~~---~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g~--~~l~~~ 170 (393)
..|+....+.|++-.-.+.. ++.+. ...+.|.++....++ ..+++...+.|++-.-.|. +.+...
T Consensus 73 ~g~ivG~~g~ll~T~DgG~t----W~~v~l~~~lpgs~~~i~~l~~~------~~~l~~~~G~iy~T~DgG~tW~~~~~~ 142 (302)
T PF14870_consen 73 EGWIVGEPGLLLHTTDGGKT----WERVPLSSKLPGSPFGITALGDG------SAELAGDRGAIYRTTDGGKTWQAVVSE 142 (302)
T ss_dssp EEEEEEETTEEEEESSTTSS-----EE----TT-SS-EEEEEEEETT------EEEEEETT--EEEESSTTSSEEEEE-S
T ss_pred ceEEEcCCceEEEecCCCCC----cEEeecCCCCCCCeeEEEEcCCC------cEEEEcCCCcEEEeCCCCCCeeEcccC
Confidence 46665556655554333333 55542 234567777776677 7777766666777654452 222222
Q ss_pred cCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEE-EEeCCCCeEEEEec-CccCCCcEEEcCCCCE
Q 016199 171 AEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLL-SFDPVTKETKVLVS-DLYFANGVVLSPDQTH 248 (393)
Q Consensus 171 ~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~-~~d~~t~~~~~~~~-~l~~~ngi~~s~dg~~ 248 (393)
.. ....++...+||++.... ..|.+| ..|+.....+...+ .......+.+++|+ .
T Consensus 143 ~~----gs~~~~~r~~dG~~vavs------------------~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~-~ 199 (302)
T PF14870_consen 143 TS----GSINDITRSSDGRYVAVS------------------SRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDG-N 199 (302)
T ss_dssp --------EEEEEE-TTS-EEEEE------------------TTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS--
T ss_pred Cc----ceeEeEEECCCCcEEEEE------------------CcccEEEEecCCCccceEEccCccceehhceecCCC-C
Confidence 22 234567788899755442 234555 45664333444433 24556778899997 5
Q ss_pred EEEEeCCCCeEEEEEecCCCCcceeeeecc-CCCCCC-----eEEECCCCCEEEEEec
Q 016199 249 LVYCETSMRRCRKFYIKGKNAGRVEKFIET-LPGLPD-----NIRYDGEGHYLIALAT 300 (393)
Q Consensus 249 l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~-l~g~P~-----~i~~d~~G~lwva~~~ 300 (393)
||+... .+.|..=+ .. ...+.+.+. .|-..+ .++..+++.+|++...
T Consensus 200 lw~~~~-Gg~~~~s~-~~---~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~ 252 (302)
T PF14870_consen 200 LWMLAR-GGQIQFSD-DP---DDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS 252 (302)
T ss_dssp EEEEET-TTEEEEEE--T---TEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST
T ss_pred EEEEeC-CcEEEEcc-CC---CCccccccccCCcccCceeeEEEEecCCCCEEEEeCC
Confidence 766653 34444433 11 122333211 111111 2577888999998763
No 297
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=84.97 E-value=32 Score=31.70 Aligned_cols=155 Identities=14% Similarity=0.092 Sum_probs=80.8
Q ss_pred CCCceEEEecCCCEEEEEe--c-CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEE
Q 016199 83 KGPEDLLYDAHSKLIYTGC--E-DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKI 159 (393)
Q Consensus 83 ~~Pe~ia~d~~g~~L~~~~--~-~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~i 159 (393)
..+++++++++|+.+.+-. . ...++....++. ..... .+.....-.++++| .+|+.+......++
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-----~~~~~-~g~~l~~PS~d~~g------~~W~v~~~~~~~~~ 91 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-----VRPVL-TGGSLTRPSWDPDG------WVWTVDDGSGGVRV 91 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-----ceeec-cCCccccccccCCC------CEEEEEcCCCceEE
Confidence 3677889999988554333 2 235666654433 22221 23345566788999 99999765543332
Q ss_pred e---CCc-eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEE----eCCCCeEEE-
Q 016199 160 S---GNS-TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSF----DPVTKETKV- 229 (393)
Q Consensus 160 d---~~g-~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~----d~~t~~~~~- 229 (393)
- .++ .....-...... ..+..+.+++|| ++-+.- +....++|+.- +.+ +....
T Consensus 92 ~~~~~~g~~~~~~v~~~~~~-~~I~~l~vSpDG~RvA~v~---------------~~~~~~~v~va~V~r~~~-g~~~~l 154 (253)
T PF10647_consen 92 VRDSASGTGEPVEVDWPGLR-GRITALRVSPDGTRVAVVV---------------EDGGGGRVYVAGVVRDGD-GVPRRL 154 (253)
T ss_pred EEecCCCcceeEEecccccC-CceEEEEECCCCcEEEEEE---------------ecCCCCeEEEEEEEeCCC-CCccee
Confidence 2 334 222111111110 046789999999 444331 11122445432 222 21111
Q ss_pred -----Ee-cCccCCCcEEEcCCCCEEEEEeCCCCeEEE-EEecC
Q 016199 230 -----LV-SDLYFANGVVLSPDQTHLVYCETSMRRCRK-FYIKG 266 (393)
Q Consensus 230 -----~~-~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~-~~~~g 266 (393)
+. .....+..+++..++..+++.......+.. +.++|
T Consensus 155 ~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG 198 (253)
T PF10647_consen 155 TGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDG 198 (253)
T ss_pred ccceEecccccCcceeeeecCCCEEEEEeCCCCCceeEEEEccC
Confidence 11 123456788999888666666555555666 55554
No 298
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=84.92 E-value=42 Score=33.13 Aligned_cols=183 Identities=13% Similarity=0.189 Sum_probs=97.6
Q ss_pred eEEEecCCC-EEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCc-eEEEeCC--
Q 016199 87 DLLYDAHSK-LIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKG-LLKISGN-- 162 (393)
Q Consensus 87 ~ia~d~~g~-~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g-l~~id~~-- 162 (393)
++++...-+ .|..|+.|..|..|+.+.++ ....+.+.++....+.+.+.-+ .+++...+.+ +...|-.
T Consensus 248 ~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~---p~~s~~~~~k~Vq~l~wh~~~p-----~~LLsGs~D~~V~l~D~R~~ 319 (463)
T KOG0270|consen 248 ALSWNRNFRNVLASGSADKTVKLWDVDTGK---PKSSITHHGKKVQTLEWHPYEP-----SVLLSGSYDGTVALKDCRDP 319 (463)
T ss_pred HHHhccccceeEEecCCCceEEEEEcCCCC---cceehhhcCCceeEEEecCCCc-----eEEEeccccceEEeeeccCc
Confidence 444544333 45566779999999998765 1233334566778888887542 4444434444 4444422
Q ss_pred -c-eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCC--eEEEEecCccCC
Q 016199 163 -S-TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTK--ETKVLVSDLYFA 237 (393)
Q Consensus 163 -g-~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~--~~~~~~~~l~~~ 237 (393)
. ...+. +.+ -+..+++++.. +.+|.. +..|.|+.||...- -+..+...-...
T Consensus 320 ~~s~~~wk--~~g----~VEkv~w~~~se~~f~~~-----------------tddG~v~~~D~R~~~~~vwt~~AHd~~I 376 (463)
T KOG0270|consen 320 SNSGKEWK--FDG----EVEKVAWDPHSENSFFVS-----------------TDDGTVYYFDIRNPGKPVWTLKAHDDEI 376 (463)
T ss_pred cccCceEE--ecc----ceEEEEecCCCceeEEEe-----------------cCCceEEeeecCCCCCceeEEEeccCCc
Confidence 1 11111 111 13345666644 333332 45678888886432 222232223456
Q ss_pred CcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecC
Q 016199 238 NGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATE 301 (393)
Q Consensus 238 ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~ 301 (393)
.|+++...-..++.+......+..+++.+...+......-.+ |.-..++.+++--+|++..+.
T Consensus 377 Sgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~-~rl~c~~~~~~~a~~la~GG~ 439 (463)
T KOG0270|consen 377 SGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKL-GRLHCFALDPDVAFTLAFGGE 439 (463)
T ss_pred ceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccc-cceeecccCCCcceEEEecCc
Confidence 788888776678788776666666666543221111110011 223445667776677776654
No 299
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=84.86 E-value=21 Score=36.10 Aligned_cols=156 Identities=14% Similarity=0.173 Sum_probs=86.2
Q ss_pred CCCceE-EEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCC-CC-CceEEEEEeCCCceEE
Q 016199 83 KGPEDL-LYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDP-DA-DRITMIVADAYKGLLK 158 (393)
Q Consensus 83 ~~Pe~i-a~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~-~~-~~~~L~v~~~~~gl~~ 158 (393)
.-|+.+ ..+.+...||.... ...++.++.+.+. .++.|..... . -+.+.+... +. .-+.-+||-+..+|++
T Consensus 467 idp~K~mlh~~dssli~~dg~~~~kLykmDIErGk---vveeW~~~dd-v-vVqy~p~~kf~qmt~eqtlvGlS~~svFr 541 (776)
T COG5167 467 IDPEKIMLHDNDSSLIYLDGGERDKLYKMDIERGK---VVEEWDLKDD-V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFR 541 (776)
T ss_pred CChhhceeecCCcceEEecCCCcccceeeecccce---eeeEeecCCc-c-eeecCCchhHHhcCccceEEeecccceEE
Confidence 456664 44555556665433 4579999887654 2555542111 1 111221100 00 0013567878899999
Q ss_pred EeCC--ceEEEeec---cCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC
Q 016199 159 ISGN--STVLLTDE---AEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD 233 (393)
Q Consensus 159 id~~--g~~~l~~~---~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~ 233 (393)
|||. |.++.+.+ ..+. ..| +.......|.|-++ +..|-|--||.-+.+..+.+.+
T Consensus 542 IDPR~~gNKi~v~esKdY~tK-n~F-ss~~tTesGyIa~a------------------s~kGDirLyDRig~rAKtalP~ 601 (776)
T COG5167 542 IDPRARGNKIKVVESKDYKTK-NKF-SSGMTTESGYIAAA------------------SRKGDIRLYDRIGKRAKTALPG 601 (776)
T ss_pred ecccccCCceeeeeehhcccc-ccc-cccccccCceEEEe------------------cCCCceeeehhhcchhhhcCcc
Confidence 9984 42222211 1111 111 23345557776666 3456688888776666666665
Q ss_pred ccC-CCcEEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199 234 LYF-ANGVVLSPDQTHLVYCETSMRRCRKFYIK 265 (393)
Q Consensus 234 l~~-~ngi~~s~dg~~l~v~~~~~~ri~~~~~~ 265 (393)
+.- .-+|.++.+|++++.+ ..+.|...++.
T Consensus 602 lG~aIk~idvta~Gk~ilaT--Ck~yllL~d~~ 632 (776)
T COG5167 602 LGDAIKHIDVTANGKHILAT--CKNYLLLTDVP 632 (776)
T ss_pred cccceeeeEeecCCcEEEEe--ecceEEEEecc
Confidence 543 5789999999877654 34677777765
No 300
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=84.82 E-value=38 Score=32.44 Aligned_cols=190 Identities=12% Similarity=0.119 Sum_probs=102.3
Q ss_pred CEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCC-CCCCCceEEEEEeCCCceEEEeCCc---eEEEe-e
Q 016199 95 KLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANS-DPDADRITMIVADAYKGLLKISGNS---TVLLT-D 169 (393)
Q Consensus 95 ~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~-G~~~~~~~L~v~~~~~gl~~id~~g---~~~l~-~ 169 (393)
..+-++..+|.|..|++.+++ ..+.+.......++++|-.. ++ +.++.|...+-|-.+|... ..++. .
T Consensus 41 ~~vav~lSngsv~lyd~~tg~---~l~~fk~~~~~~N~vrf~~~ds~----h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~ 113 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ---LLEEFKGPPATTNGVRFISCDSP----HGVISCSSDGTVRLWDIRSQAESARISWT 113 (376)
T ss_pred eeEEEEecCCeEEEEeccchh---hhheecCCCCcccceEEecCCCC----CeeEEeccCCeEEEEEeecchhhhheecc
Confidence 357788889999999988743 14444433344567777542 21 2578886666677777533 11111 1
Q ss_pred ccCCccccccccEEEcC--CCcEEEEeCCCccchhhheehhccc-CCCcEEEEEeCCCCeE--EEEec-CccCCCcEEEc
Q 016199 170 EAEGQKFKLTDGVDVAD--DGMIYFTDASNKYYLREYILDIFEG-KPNGRLLSFDPVTKET--KVLVS-DLYFANGVVLS 243 (393)
Q Consensus 170 ~~~g~~~~~~~~l~~d~--dG~l~~td~~~~~~~~~~~~~~~e~-~~~g~l~~~d~~t~~~--~~~~~-~l~~~ngi~~s 243 (393)
...+.++ +.+|. .+++.-+.. |. .....|+.||-...+. ..+.+ ...-...+.|.
T Consensus 114 ~~~~~~f-----~~ld~nck~~ii~~Gt--------------E~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFH 174 (376)
T KOG1188|consen 114 QQSGTPF-----ICLDLNCKKNIIACGT--------------ELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFH 174 (376)
T ss_pred CCCCCcc-----eEeeccCcCCeEEecc--------------ccccCceEEEEEEeccccchhhhhhhhccCcceeEEec
Confidence 2222222 23443 566665531 11 1234577788643321 11111 12234567788
Q ss_pred CCCCEEEEEeCCCCeEEEEEecCCCCcce-eeeeccCCCCCCeEEECCCC--CEEEEEecCcchhhhhhhc
Q 016199 244 PDQTHLVYCETSMRRCRKFYIKGKNAGRV-EKFIETLPGLPDNIRYDGEG--HYLIALATEFSTYWDLAYR 311 (393)
Q Consensus 244 ~dg~~l~v~~~~~~ri~~~~~~g~~~~~~-~~~~~~l~g~P~~i~~d~~G--~lwva~~~~r~~~~~~~~~ 311 (393)
|..-.++++.+..+-+..||++++..... ...+ +....-.-+..-++| ++|.-++-..-.++++-..
T Consensus 175 P~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~ 244 (376)
T KOG1188|consen 175 PSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI-NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDG 244 (376)
T ss_pred CCCCCeEEeecccceEEeeecCCCcchhhHHHhh-cccceeeeeeeecCCcceEEEEEccCceeEEEccCC
Confidence 88878999999999999999976521111 1111 111111224455666 6777665544445544433
No 301
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=84.63 E-value=25 Score=33.30 Aligned_cols=123 Identities=15% Similarity=0.199 Sum_probs=70.6
Q ss_pred eeeeEECCCCCCCCceEEEEEeC-CCceEEEeCC-c-eE-EEeec------cCCccccccccEEEc----CCCcEEEEeC
Q 016199 130 PLGIAFANSDPDADRITMIVADA-YKGLLKISGN-S-TV-LLTDE------AEGQKFKLTDGVDVA----DDGMIYFTDA 195 (393)
Q Consensus 130 p~gl~~d~~G~~~~~~~L~v~~~-~~gl~~id~~-g-~~-~l~~~------~~g~~~~~~~~l~~d----~dG~l~~td~ 195 (393)
.+++..+.+| +++|..- ..-|+.++++ | +. .+... ..+..+..-|+..+- .+++|-+-|-
T Consensus 146 iNsV~~~~~G------~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 146 INSVDKDDDG------DYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred eeeeeecCCc------cEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 4678888888 8777743 3458899854 4 21 22100 011225556676666 5666665542
Q ss_pred C-CccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCC--------CcEEEcCCCCEEEEEeCCCCeEEEEEecC
Q 016199 196 S-NKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFA--------NGVVLSPDQTHLVYCETSMRRCRKFYIKG 266 (393)
Q Consensus 196 ~-~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~--------ngi~~s~dg~~l~v~~~~~~ri~~~~~~g 266 (393)
. ... .......++++.+|+.+++.+.+......+ -.+..-++| .+++++...+++.-|+.+|
T Consensus 220 ~~~~~--------~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nG-n~li~~g~~g~~~E~~~~G 290 (299)
T PF14269_consen 220 ANSDF--------NGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNG-NVLIGWGNNGRISEFTPDG 290 (299)
T ss_pred CCCCC--------CCCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCC-CEEEecCCCceEEEECCCC
Confidence 1 100 011235678999999977665543221112 224455666 5678888888888888665
Q ss_pred C
Q 016199 267 K 267 (393)
Q Consensus 267 ~ 267 (393)
+
T Consensus 291 ~ 291 (299)
T PF14269_consen 291 E 291 (299)
T ss_pred C
Confidence 3
No 302
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=83.84 E-value=61 Score=34.05 Aligned_cols=97 Identities=11% Similarity=0.163 Sum_probs=51.6
Q ss_pred EEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeec--CCCceeeeEECCCCCCCCceEEEEEeCCCceEEE---eCCc
Q 016199 89 LYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWIN--TGGRPLGIAFANSDPDADRITMIVADAYKGLLKI---SGNS 163 (393)
Q Consensus 89 a~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~--~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~i---d~~g 163 (393)
++|..++.+-+|+..|.+|.|+.+++. ...+.+ ..+......+..+. .+.++...+|.+.+ +...
T Consensus 40 c~dst~~~l~~GsS~G~lyl~~R~~~~----~~~~~~~~~~~~~~~~~vs~~e------~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 40 CVDATEEYLAMGSSAGSVYLYNRHTGE----MRKLKNEGATGITCVRSVSSVE------YLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred EeecCCceEEEecccceEEEEecCchh----hhcccccCccceEEEEEecchh------HhhhhhcCCceEEeehhhccC
Confidence 355666677788888888888877654 222222 11222334455554 45444445554433 2222
Q ss_pred --eEEEeeccCCccccccccEEEcCCC-cEEEEeC
Q 016199 164 --TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDA 195 (393)
Q Consensus 164 --~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~ 195 (393)
...+....+-..-..+..+.++++| ++|.+|.
T Consensus 110 p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~ 144 (726)
T KOG3621|consen 110 PRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDS 144 (726)
T ss_pred CCcceeeccccccCCceEEEEEecccccEEeecCC
Confidence 1111111111112346788999999 8999974
No 303
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=83.82 E-value=4.9 Score=39.80 Aligned_cols=65 Identities=15% Similarity=0.235 Sum_probs=34.7
Q ss_pred cCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcc--eeeeec--------------cCCCCCCeEEECCCCC-EEEE
Q 016199 235 YFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGR--VEKFIE--------------TLPGLPDNIRYDGEGH-YLIA 297 (393)
Q Consensus 235 ~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~--~~~~~~--------------~l~g~P~~i~~d~~G~-lwva 297 (393)
..+..|.+|-|.++|||+....+.|..||++.+..-+ -++++. .+.|-|.-+.++-||+ +|++
T Consensus 312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp -----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred CceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 3468899999999999999999999999998542111 112221 1234577788999997 8887
Q ss_pred Ee
Q 016199 298 LA 299 (393)
Q Consensus 298 ~~ 299 (393)
+.
T Consensus 392 nS 393 (461)
T PF05694_consen 392 NS 393 (461)
T ss_dssp --
T ss_pred ee
Confidence 54
No 304
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=83.42 E-value=42 Score=31.89 Aligned_cols=55 Identities=13% Similarity=0.093 Sum_probs=34.3
Q ss_pred eeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc---eEEEeeccCCccccccccEEEcCCCcEEEEe
Q 016199 130 PLGIAFANSDPDADRITMIVADAYKGLLKISGNS---TVLLTDEAEGQKFKLTDGVDVADDGMIYFTD 194 (393)
Q Consensus 130 p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g---~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td 194 (393)
...+.|.+.|. .|-+|-..+.++.+|..+ ...+.. ..+-+..++.++||+..++.
T Consensus 26 a~~~~Fs~~G~-----~lAvGc~nG~vvI~D~~T~~iar~lsa-----H~~pi~sl~WS~dgr~Llts 83 (405)
T KOG1273|consen 26 AECCQFSRWGD-----YLAVGCANGRVVIYDFDTFRIARMLSA-----HVRPITSLCWSRDGRKLLTS 83 (405)
T ss_pred cceEEeccCcc-----eeeeeccCCcEEEEEccccchhhhhhc-----cccceeEEEecCCCCEeeee
Confidence 45677888881 344444456677887655 122211 12335688999999988885
No 305
>PHA03098 kelch-like protein; Provisional
Probab=83.10 E-value=59 Score=33.35 Aligned_cols=134 Identities=10% Similarity=-0.004 Sum_probs=64.9
Q ss_pred eEEEEEcCCCCCcceeeeeecCC-Cc-eeeeEECCCCCCCCceEEEEEeCCC------ceEEEeCCc-e-EEEeeccCCc
Q 016199 105 WIKRVTLNDSPADSLVHNWINTG-GR-PLGIAFANSDPDADRITMIVADAYK------GLLKISGNS-T-VLLTDEAEGQ 174 (393)
Q Consensus 105 ~I~~~~~~~~~~~~~~~~~~~~~-~~-p~gl~~d~~G~~~~~~~L~v~~~~~------gl~~id~~g-~-~~l~~~~~g~ 174 (393)
.+++|++.+.. +....... .+ -.+++. -+| +||+..... -+.++|+.. . +... ....
T Consensus 312 ~v~~yd~~~~~----W~~~~~~~~~R~~~~~~~-~~~------~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~-~lp~- 378 (534)
T PHA03098 312 SVVSYDTKTKS----WNKVPELIYPRKNPGVTV-FNN------RIYVIGGIYNSISLNTVESWKPGESKWREEP-PLIF- 378 (534)
T ss_pred cEEEEeCCCCe----eeECCCCCcccccceEEE-ECC------EEEEEeCCCCCEecceEEEEcCCCCceeeCC-CcCc-
Confidence 57888887765 55443221 11 123332 256 888874432 155666654 1 1111 1111
Q ss_pred cccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCC--CcEEEcCCCCEEEEE
Q 016199 175 KFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFA--NGVVLSPDQTHLVYC 252 (393)
Q Consensus 175 ~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~--ngi~~s~dg~~l~v~ 252 (393)
+ +..+.. ..-+|.||+.-.... .+.....+++||+.+++.+.+.. ...+ ..-+...++ .+|+.
T Consensus 379 ~-r~~~~~-~~~~~~iYv~GG~~~-----------~~~~~~~v~~yd~~t~~W~~~~~-~p~~r~~~~~~~~~~-~iyv~ 443 (534)
T PHA03098 379 P-RYNPCV-VNVNNLIYVIGGISK-----------NDELLKTVECFSLNTNKWSKGSP-LPISHYGGCAIYHDG-KIYVI 443 (534)
T ss_pred C-CccceE-EEECCEEEEECCcCC-----------CCcccceEEEEeCCCCeeeecCC-CCccccCceEEEECC-EEEEE
Confidence 1 112222 233678888632110 00123568999999888876532 2111 111222344 67776
Q ss_pred eCCC--------CeEEEEEecC
Q 016199 253 ETSM--------RRCRKFYIKG 266 (393)
Q Consensus 253 ~~~~--------~ri~~~~~~g 266 (393)
+-.. ..+++||+..
T Consensus 444 GG~~~~~~~~~~~~v~~yd~~~ 465 (534)
T PHA03098 444 GGISYIDNIKVYNIVESYNPVT 465 (534)
T ss_pred CCccCCCCCcccceEEEecCCC
Confidence 5321 2488898754
No 306
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=82.20 E-value=46 Score=31.45 Aligned_cols=146 Identities=16% Similarity=0.110 Sum_probs=77.2
Q ss_pred EecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc--eEEE
Q 016199 90 YDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS--TVLL 167 (393)
Q Consensus 90 ~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g--~~~l 167 (393)
++-.|+.+|++.-+.++..++..+.+.+...-.+...++..+.+++..+ .-|++....||..+|-.. ...+
T Consensus 134 v~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~ISGn-------~AYvA~~d~GL~ivDVSnp~sPvl 206 (370)
T COG5276 134 VYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAISGN-------YAYVAWRDGGLTIVDVSNPHSPVL 206 (370)
T ss_pred EEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEecC-------eEEEEEeCCCeEEEEccCCCCCeE
Confidence 3445777888876555777777654422222233333333456666533 689998889999998654 2233
Q ss_pred eeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC--ccCCCc---EEE
Q 016199 168 TDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD--LYFANG---VVL 242 (393)
Q Consensus 168 ~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~--l~~~ng---i~~ 242 (393)
....+-.+ .+.++.+. +.+.|+++. +-+|+..|..+.+-..+... -..|.+ +.+
T Consensus 207 i~~~n~g~--g~~sv~vs-dnr~y~vvy------------------~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~V 265 (370)
T COG5276 207 IGSYNTGP--GTYSVSVS-DNRAYLVVY------------------DEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPV 265 (370)
T ss_pred EEEEecCC--ceEEEEec-CCeeEEEEc------------------ccceEEEecCCCCCceEeeccccCCcccccceec
Confidence 22211111 23344333 567888862 23588887654332122111 122333 344
Q ss_pred cCCCCEEEEEeCCCCeEEEEEecC
Q 016199 243 SPDQTHLVYCETSMRRCRKFYIKG 266 (393)
Q Consensus 243 s~dg~~l~v~~~~~~ri~~~~~~g 266 (393)
+ |+..|+.+- ...+-..+.+.
T Consensus 266 s--~~~~Yvadg-a~gl~~idisn 286 (370)
T COG5276 266 S--GEYAYVADG-AKGLPIIDISN 286 (370)
T ss_pred c--cceeeeecc-ccCceeEeccC
Confidence 3 457888874 44566666653
No 307
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=82.07 E-value=5.2 Score=24.48 Aligned_cols=32 Identities=16% Similarity=0.304 Sum_probs=25.8
Q ss_pred cCccCCCceEEEecCCCEEEEEecCCeEEEEE
Q 016199 79 YGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVT 110 (393)
Q Consensus 79 ~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~ 110 (393)
.+......+|++.++++.+.+++.|+.|..|+
T Consensus 8 ~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 8 RGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp ESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred cCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 34445667899999999898999999888775
No 308
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=81.83 E-value=8.5 Score=37.26 Aligned_cols=109 Identities=17% Similarity=0.253 Sum_probs=59.6
Q ss_pred CceeeeEECCCCCCCCceEEEEEeCCCceEEEeCC----ceEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchh
Q 016199 128 GRPLGIAFANSDPDADRITMIVADAYKGLLKISGN----STVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLR 202 (393)
Q Consensus 128 ~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~----g~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~ 202 (393)
..+......++| +-+++++...+...++-. +.+.+ ...... ..++.+.+..+. ...++|.
T Consensus 63 ~a~~~~~~s~~~-----~llAv~~~~K~~~~f~~~~~~~~~kl~-~~~~v~--~~~~ai~~~~~~~sv~v~dk------- 127 (390)
T KOG3914|consen 63 LAPALVLTSDSG-----RLVAVATSSKQRAVFDYRENPKGAKLL-DVSCVP--KRPTAISFIREDTSVLVADK------- 127 (390)
T ss_pred ccccccccCCCc-----eEEEEEeCCCceEEEEEecCCCcceee-eEeecc--cCcceeeeeeccceEEEEee-------
Confidence 344555556666 235666666664443322 21122 111111 234566665544 5666652
Q ss_pred hheehhcccCCCcEEEEEeCC---CCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCC-eEEEE
Q 016199 203 EYILDIFEGKPNGRLLSFDPV---TKETKVLVSDLYFANGVVLSPDQTHLVYCETSMR-RCRKF 262 (393)
Q Consensus 203 ~~~~~~~e~~~~g~l~~~d~~---t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~-ri~~~ 262 (393)
.|-++.+|-- .+..+..+..+.....|++++|+++++.++.... ||.+|
T Consensus 128 -----------agD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~y 180 (390)
T KOG3914|consen 128 -----------AGDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRY 180 (390)
T ss_pred -----------cCCceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEec
Confidence 3345555432 2555566666777889999999999988887433 44444
No 309
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=81.79 E-value=4.5 Score=30.71 Aligned_cols=36 Identities=14% Similarity=0.164 Sum_probs=28.1
Q ss_pred EEecCccCCCceEEEecCCCEEEEEec-CCeEEEEEcC
Q 016199 76 KVGYGVLKGPEDLLYDAHSKLIYTGCE-DGWIKRVTLN 112 (393)
Q Consensus 76 ~l~~g~~~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~ 112 (393)
.+..| +..|.+|+++++++.||+++. .+.|..+..+
T Consensus 48 ~va~g-~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 48 VVASG-FSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred Eeecc-CCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 34344 789999999999999999886 5677777654
No 310
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=81.64 E-value=13 Score=36.29 Aligned_cols=64 Identities=13% Similarity=0.217 Sum_probs=44.4
Q ss_pred cCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCc
Q 016199 235 YFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEF 302 (393)
Q Consensus 235 ~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r 302 (393)
.-+..+++++|+.+ .++.+..+.+..||+. +|+.....+....++.+++.|+-+.+.......|
T Consensus 124 ~diydL~Ws~d~~~-l~s~s~dns~~l~Dv~---~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 124 DDIYDLAWSPDSNF-LVSGSVDNSVRLWDVH---AGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred cchhhhhccCCCce-eeeeeccceEEEEEec---cceeEeeccccccccceeecchhhhhhhhhccCc
Confidence 45778899999964 4667788999999984 4555544444455778888877776665555444
No 311
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=81.53 E-value=71 Score=33.20 Aligned_cols=60 Identities=23% Similarity=0.286 Sum_probs=33.2
Q ss_pred EEEcCCCCEEEEEeCCCCeEEEEEecCCCC-cceeee-eccCCCC------CCeEEECCCCCEEEEEe
Q 016199 240 VVLSPDQTHLVYCETSMRRCRKFYIKGKNA-GRVEKF-IETLPGL------PDNIRYDGEGHYLIALA 299 (393)
Q Consensus 240 i~~s~dg~~l~v~~~~~~ri~~~~~~g~~~-~~~~~~-~~~l~g~------P~~i~~d~~G~lwva~~ 299 (393)
+-+..|+..|.-+...++.|-.||+..... ...+.. .+..+.. --+++.|+.|.+..|.-
T Consensus 223 vv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC 290 (720)
T KOG0321|consen 223 VVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC 290 (720)
T ss_pred EEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe
Confidence 335578777766665578888899864421 111111 1111100 13578899998666544
No 312
>KOG4328 consensus WD40 protein [Function unknown]
Probab=81.32 E-value=28 Score=34.50 Aligned_cols=155 Identities=14% Similarity=0.207 Sum_probs=85.8
Q ss_pred ceEEEecCCC--EEEEEecCCeEEEEEcCCCCCc-ceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEE-eC
Q 016199 86 EDLLYDAHSK--LIYTGCEDGWIKRVTLNDSPAD-SLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKI-SG 161 (393)
Q Consensus 86 e~ia~d~~g~--~L~~~~~~g~I~~~~~~~~~~~-~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~i-d~ 161 (393)
.+++|.|-.+ .+-+|+..|.|-.|+..+.+-+ ..+..+....+...+|.|.+.+.+ .+|.. .+.|..++ |.
T Consensus 190 t~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s----~i~ss-SyDGtiR~~D~ 264 (498)
T KOG4328|consen 190 TSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTS----QIYSS-SYDGTIRLQDF 264 (498)
T ss_pred EEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChh----heeee-ccCceeeeeee
Confidence 4577888543 5667888898999988532100 113333333445678999886521 46666 56665554 65
Q ss_pred Cc--eEEEeeccCCccccccccEEEcC-CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeE--EEEecCccC
Q 016199 162 NS--TVLLTDEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKET--KVLVSDLYF 236 (393)
Q Consensus 162 ~g--~~~l~~~~~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~--~~~~~~l~~ 236 (393)
++ .+.+... +... ....++.+.. ++.++|++ .-|-+-.+|..++.. ..+.-.-..
T Consensus 265 ~~~i~e~v~s~-~~d~-~~fs~~d~~~e~~~vl~~~------------------~~G~f~~iD~R~~~s~~~~~~lh~kK 324 (498)
T KOG4328|consen 265 EGNISEEVLSL-DTDN-IWFSSLDFSAESRSVLFGD------------------NVGNFNVIDLRTDGSEYENLRLHKKK 324 (498)
T ss_pred cchhhHHHhhc-Cccc-eeeeeccccCCCccEEEee------------------cccceEEEEeecCCccchhhhhhhcc
Confidence 55 2222111 0111 1122344444 34666664 122233445443332 222212236
Q ss_pred CCcEEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199 237 ANGVVLSPDQTHLVYCETSMRRCRKFYIK 265 (393)
Q Consensus 237 ~ngi~~s~dg~~l~v~~~~~~ri~~~~~~ 265 (393)
.+++++.|-..+++.+...++....||+.
T Consensus 325 I~sv~~NP~~p~~laT~s~D~T~kIWD~R 353 (498)
T KOG4328|consen 325 ITSVALNPVCPWFLATASLDQTAKIWDLR 353 (498)
T ss_pred cceeecCCCCchheeecccCcceeeeehh
Confidence 78999999988888888888888888875
No 313
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=81.28 E-value=66 Score=32.67 Aligned_cols=185 Identities=12% Similarity=0.167 Sum_probs=97.0
Q ss_pred CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeec-CCCceeeeEECCCCCCCCceEEE-EEeCCCceEEEe
Q 016199 83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWIN-TGGRPLGIAFANSDPDADRITMI-VADAYKGLLKIS 160 (393)
Q Consensus 83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~-~~~~p~gl~~d~~G~~~~~~~L~-v~~~~~gl~~id 160 (393)
....++.++++|+.|-+|+.+|.|..||..... .+..+.. ...+.-.++.. + .++ .+...+-|...|
T Consensus 218 ~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k---~~~~~~~~h~~rvg~laW~--~------~~lssGsr~~~I~~~d 286 (484)
T KOG0305|consen 218 ELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQK---KTRTLRGSHASRVGSLAWN--S------SVLSSGSRDGKILNHD 286 (484)
T ss_pred CceEEEEECCCCCEEEEeecCCeEEEEehhhcc---ccccccCCcCceeEEEecc--C------ceEEEecCCCcEEEEE
Confidence 567779999999999999999999999976532 0222221 22344445544 4 344 443333466665
Q ss_pred CCceEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeE-EEEecCccCCCc
Q 016199 161 GNSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKET-KVLVSDLYFANG 239 (393)
Q Consensus 161 ~~g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~-~~~~~~l~~~ng 239 (393)
..-.+.+.....+.. ..+.++...+||+...+- ...+.++.+|...... ..+.....-.-.
T Consensus 287 vR~~~~~~~~~~~H~-qeVCgLkws~d~~~lASG-----------------gnDN~~~Iwd~~~~~p~~~~~~H~aAVKA 348 (484)
T KOG0305|consen 287 VRISQHVVSTLQGHR-QEVCGLKWSPDGNQLASG-----------------GNDNVVFIWDGLSPEPKFTFTEHTAAVKA 348 (484)
T ss_pred Eecchhhhhhhhccc-ceeeeeEECCCCCeeccC-----------------CCccceEeccCCCccccEEEeccceeeeE
Confidence 432001111111211 236688899998765541 3345788888633222 222222333456
Q ss_pred EEEcCCCCEEEEEeCC-CCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEe
Q 016199 240 VVLSPDQTHLVYCETS-MRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALA 299 (393)
Q Consensus 240 i~~s~dg~~l~v~~~~-~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~ 299 (393)
++++|=.+.|+.+..+ ..++.+|+-. .++....-++ -...-.++...+..+=.++++
T Consensus 349 ~awcP~q~~lLAsGGGs~D~~i~fwn~--~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sth 406 (484)
T KOG0305|consen 349 LAWCPWQSGLLATGGGSADRCIKFWNT--NTGARIDSVD-TGSQVCSLIWSKKYKELLSTH 406 (484)
T ss_pred eeeCCCccCceEEcCCCcccEEEEEEc--CCCcEecccc-cCCceeeEEEcCCCCEEEEec
Confidence 7777776666665543 3356665532 1222221111 112445666666665444444
No 314
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=80.63 E-value=75 Score=32.89 Aligned_cols=152 Identities=11% Similarity=0.112 Sum_probs=80.7
Q ss_pred cCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEE-eCCCceE
Q 016199 79 YGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVA-DAYKGLL 157 (393)
Q Consensus 79 ~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~-~~~~gl~ 157 (393)
.|...+--++++...++.|+.|+.|..+..|+..++. -..... +..-.+.+++..+ .+.++ ..+.-|.
T Consensus 246 ~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~----C~~~l~-gh~stv~~~~~~~------~~~~sgs~D~tVk 314 (537)
T KOG0274|consen 246 VGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE----CTHSLQ-GHTSSVRCLTIDP------FLLVSGSRDNTVK 314 (537)
T ss_pred cCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc----EEEEec-CCCceEEEEEccC------ceEeeccCCceEE
Confidence 3444445557776545678888889999999877664 222221 1111222333333 33333 2334455
Q ss_pred EEeCC-c--eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC-
Q 016199 158 KISGN-S--TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD- 233 (393)
Q Consensus 158 ~id~~-g--~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~- 233 (393)
.++-+ + ...+. + ....++.+..+ +.+.|+- +..+.|-.||+.+++.-....+
T Consensus 315 VW~v~n~~~l~l~~----~-h~~~V~~v~~~--~~~lvsg-----------------s~d~~v~VW~~~~~~cl~sl~gH 370 (537)
T KOG0274|consen 315 VWDVTNGACLNLLR----G-HTGPVNCVQLD--EPLLVSG-----------------SYDGTVKVWDPRTGKCLKSLSGH 370 (537)
T ss_pred EEeccCcceEEEec----c-ccccEEEEEec--CCEEEEE-----------------ecCceEEEEEhhhceeeeeecCC
Confidence 55543 3 22322 1 11234566665 5444442 3345677888776665433333
Q ss_pred ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCC
Q 016199 234 LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGK 267 (393)
Q Consensus 234 l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~ 267 (393)
......+.++.. ..+++.+.+..|..+|+.+.
T Consensus 371 ~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~ 402 (537)
T KOG0274|consen 371 TGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTK 402 (537)
T ss_pred cceEEEEEecCc--ceEEeeeeccceEeecCCch
Confidence 233445554432 45667777888999998654
No 315
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=80.55 E-value=55 Score=31.28 Aligned_cols=59 Identities=8% Similarity=0.179 Sum_probs=31.2
Q ss_pred EcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccC-CCCCCeEEECCCCCEEEEEecC
Q 016199 242 LSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETL-PGLPDNIRYDGEGHYLIALATE 301 (393)
Q Consensus 242 ~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l-~g~P~~i~~d~~G~lwva~~~~ 301 (393)
+++-++.| +.....+.++.|+++.........+.... ...-.-.+++.||.+.+.....
T Consensus 315 ~d~~~~~l-a~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd 374 (385)
T KOG1034|consen 315 FDPWQKML-ALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDD 374 (385)
T ss_pred ecHHHHHH-hhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCC
Confidence 34445433 44445688999998753221111121111 1123446678899988877654
No 316
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=80.37 E-value=71 Score=32.47 Aligned_cols=153 Identities=10% Similarity=0.056 Sum_probs=81.8
Q ss_pred eEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCC---CceEEEeCCc
Q 016199 87 DLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAY---KGLLKISGNS 163 (393)
Q Consensus 87 ~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~---~gl~~id~~g 163 (393)
++.+.+|++.+-.|..|+.+..|+..... ....+....+....|++.|--. .|+....+ +-|...|..+
T Consensus 306 gLkws~d~~~lASGgnDN~~~Iwd~~~~~---p~~~~~~H~aAVKA~awcP~q~-----~lLAsGGGs~D~~i~fwn~~~ 377 (484)
T KOG0305|consen 306 GLKWSPDGNQLASGGNDNVVFIWDGLSPE---PKFTFTEHTAAVKALAWCPWQS-----GLLATGGGSADRCIKFWNTNT 377 (484)
T ss_pred eeEECCCCCeeccCCCccceEeccCCCcc---ccEEEeccceeeeEeeeCCCcc-----CceEEcCCCcccEEEEEEcCC
Confidence 37788888755555567788888874322 1333444456778888887320 34443222 2244445543
Q ss_pred eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEE
Q 016199 164 TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVL 242 (393)
Q Consensus 164 ~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~ 242 (393)
...+.....+ ..+..|...+.. .|..+-... ...-.||+|..- +....+.......-.+++
T Consensus 378 g~~i~~vdtg---sQVcsL~Wsk~~kEi~sthG~s--------------~n~i~lw~~ps~-~~~~~l~gH~~RVl~la~ 439 (484)
T KOG0305|consen 378 GARIDSVDTG---SQVCSLIWSKKYKELLSTHGYS--------------ENQITLWKYPSM-KLVAELLGHTSRVLYLAL 439 (484)
T ss_pred CcEecccccC---CceeeEEEcCCCCEEEEecCCC--------------CCcEEEEecccc-ceeeeecCCcceeEEEEE
Confidence 1111111111 235577788776 444442111 112356666432 334444444555677889
Q ss_pred cCCCCEEEEEeCCCCeEEEEEecC
Q 016199 243 SPDQTHLVYCETSMRRCRKFYIKG 266 (393)
Q Consensus 243 s~dg~~l~v~~~~~~ri~~~~~~g 266 (393)
+|||+.+.+ ...+..|..|++-+
T Consensus 440 SPdg~~i~t-~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 440 SPDGETIVT-GAADETLRFWNLFD 462 (484)
T ss_pred CCCCCEEEE-ecccCcEEeccccC
Confidence 999987654 44566676666543
No 317
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=80.19 E-value=13 Score=36.22 Aligned_cols=112 Identities=13% Similarity=0.252 Sum_probs=61.2
Q ss_pred eEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeC---CCceEEEeCC
Q 016199 87 DLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADA---YKGLLKISGN 162 (393)
Q Consensus 87 ~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~---~~gl~~id~~ 162 (393)
+|.++=|.+.||+... .|-|.+||..+.. .... +| .+|+|.. +.-+..+..+
T Consensus 316 DilISmDDRFLYvs~WLHGDirQYdIsDP~----------------n~kL--tg------Qi~lGG~i~~~s~vkvl~~e 371 (476)
T KOG0918|consen 316 DILISLDDRFLYVSNWLHGDIRQYDISDPK----------------NPKL--TG------QIFLGGSIQKGSPVKVLEEE 371 (476)
T ss_pred eeEEeecCcEEEEEeeeecceeeeccCCCC----------------Ccce--EE------EEEECcEeecCCceEEeccc
Confidence 4566777788998876 5567788876532 1111 35 6777633 1113333323
Q ss_pred c--eEEEeeccCCcccc-ccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCC
Q 016199 163 S--TVLLTDEAEGQKFK-LTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVT 224 (393)
Q Consensus 163 g--~~~l~~~~~g~~~~-~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t 224 (393)
+ .+.-+..+.|..++ .|.-+..+-|| +||+|++-.+..-++|--++.+.. +.+.++|-+|
T Consensus 372 ~~~~~~ea~~vKGrkl~GGPQMlQLSLDGKRLYVt~SLys~WD~QFYPE~v~~G--~~miqidvdt 435 (476)
T KOG0918|consen 372 GLKKQPEALYVKGRKLRGGPQMLQLSLDGKRLYVTNSLYSAWDRQFYPELVSKG--SHMIQIDVDT 435 (476)
T ss_pred cccCCCccceecCccccCCceeEEeccCCcEEEEEchhhhhhHhhhCHHHHhcC--ceEEEEeeec
Confidence 2 10001112233332 24567778899 899998766555556555555432 3567777643
No 318
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=80.16 E-value=16 Score=33.76 Aligned_cols=68 Identities=25% Similarity=0.249 Sum_probs=44.0
Q ss_pred cccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeE-EEEecCccCCCcEEEcCCCCEEEEEeCCCC
Q 016199 179 TDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKET-KVLVSDLYFANGVVLSPDQTHLVYCETSMR 257 (393)
Q Consensus 179 ~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~-~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ 257 (393)
++++.+-+|+.|..+- + ..+|+..|+=.+... .++.-.-...|.++|+||- .+..+.+...
T Consensus 254 v~gvrIRpD~KIlATA-G----------------WD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~-~lmAaaskD~ 315 (323)
T KOG0322|consen 254 VSGVRIRPDGKILATA-G----------------WDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDC-ELMAAASKDA 315 (323)
T ss_pred ccceEEccCCcEEeec-c----------------cCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCC-chhhhccCCc
Confidence 5688899999987763 2 234555555444332 2222223457899999995 4667777788
Q ss_pred eEEEEEe
Q 016199 258 RCRKFYI 264 (393)
Q Consensus 258 ri~~~~~ 264 (393)
||..|++
T Consensus 316 rISLWkL 322 (323)
T KOG0322|consen 316 RISLWKL 322 (323)
T ss_pred eEEeeec
Confidence 8887764
No 319
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=79.70 E-value=65 Score=32.90 Aligned_cols=85 Identities=15% Similarity=0.128 Sum_probs=46.5
Q ss_pred CCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCC--EEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEEC
Q 016199 212 KPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQT--HLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYD 289 (393)
Q Consensus 212 ~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~--~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d 289 (393)
++.|.++.|+...++++.....-.+++++...-+++ .++.+.....++..+.++.. .....+. ..+..+.++++.
T Consensus 77 t~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~--~~~~~~~-~~~~~~~sl~is 153 (541)
T KOG4547|consen 77 TPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK--VIIRIWK-EQKPLVSSLCIS 153 (541)
T ss_pred cCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc--eeeeeec-cCCCccceEEEc
Confidence 667889999988888877655333333333222222 22333333445555554321 1122232 223357889999
Q ss_pred CCCCEEEEEe
Q 016199 290 GEGHYLIALA 299 (393)
Q Consensus 290 ~~G~lwva~~ 299 (393)
+||.+.+...
T Consensus 154 ~D~~~l~~as 163 (541)
T KOG4547|consen 154 PDGKILLTAS 163 (541)
T ss_pred CCCCEEEecc
Confidence 9998776544
No 320
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=79.53 E-value=28 Score=37.03 Aligned_cols=66 Identities=12% Similarity=0.146 Sum_probs=46.8
Q ss_pred ceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEe-CCCceEEEeC
Q 016199 86 EDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVAD-AYKGLLKISG 161 (393)
Q Consensus 86 e~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~-~~~gl~~id~ 161 (393)
.+++|..+|..||.|.+.+-+++|..+++. .+-.+..++...++.+.+|+ .+|..- .+..|..+..
T Consensus 255 ~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~----kqfLPRLgs~I~~i~vS~ds------~~~sl~~~DNqI~li~~ 321 (792)
T KOG1963|consen 255 NSLSFSSDGAYLLSGGREGVLVLWQLETGK----KQFLPRLGSPILHIVVSPDS------DLYSLVLEDNQIHLIKA 321 (792)
T ss_pred ceeEEecCCceEeecccceEEEEEeecCCC----cccccccCCeeEEEEEcCCC------CeEEEEecCceEEEEec
Confidence 357888999999999888888999888765 33344445556899999998 665432 3455666644
No 321
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=79.13 E-value=71 Score=33.04 Aligned_cols=143 Identities=10% Similarity=0.139 Sum_probs=82.8
Q ss_pred CCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCceEEEeeccCC
Q 016199 94 SKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNSTVLLTDEAEG 173 (393)
Q Consensus 94 g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g~~~l~~~~~g 173 (393)
+..++.|+.++.|..|+....+ .++......++...+.++... .++-+..+..|...|..+.........+
T Consensus 341 ~~~lvsgs~d~~v~VW~~~~~~---cl~sl~gH~~~V~sl~~~~~~------~~~Sgs~D~~IkvWdl~~~~~c~~tl~~ 411 (537)
T KOG0274|consen 341 EPLLVSGSYDGTVKVWDPRTGK---CLKSLSGHTGRVYSLIVDSEN------RLLSGSLDTTIKVWDLRTKRKCIHTLQG 411 (537)
T ss_pred CCEEEEEecCceEEEEEhhhce---eeeeecCCcceEEEEEecCcc------eEEeeeeccceEeecCCchhhhhhhhcC
Confidence 5689999999988888887544 233333345677888888755 7888866666777777652111111122
Q ss_pred ccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEe
Q 016199 174 QKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCE 253 (393)
Q Consensus 174 ~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~ 253 (393)
.. ..++++. ..++++++. ...+.|..+|..+++.......- .-.++.+-..++..+++.
T Consensus 412 h~-~~v~~l~--~~~~~Lvs~-----------------~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~~~~il~s 470 (537)
T KOG0274|consen 412 HT-SLVSSLL--LRDNFLVSS-----------------SADGTIKLWDAEEGECLRTLEGR-HVGGVSALALGKEEILCS 470 (537)
T ss_pred Cc-ccccccc--cccceeEec-----------------cccccEEEeecccCceeeeeccC-CcccEEEeecCcceEEEE
Confidence 11 1122222 245566664 34456777887777655444332 112333222334566777
Q ss_pred CCCCeEEEEEecC
Q 016199 254 TSMRRCRKFYIKG 266 (393)
Q Consensus 254 ~~~~ri~~~~~~g 266 (393)
...+.+..|++..
T Consensus 471 ~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 471 SDDGSVKLWDLRS 483 (537)
T ss_pred ecCCeeEEEeccc
Confidence 7788888888864
No 322
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=78.45 E-value=20 Score=34.19 Aligned_cols=119 Identities=15% Similarity=0.150 Sum_probs=69.8
Q ss_pred cCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCC-----CCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhh
Q 016199 243 SPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLP-----GLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRK 317 (393)
Q Consensus 243 s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~-----g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~ 317 (393)
+-||+++++..+........+++.-|.+......-.+. .+|-|+..-.+|++|++...+... +|
T Consensus 140 ~fDGe~VLvvsR~~~~pHLLkvsdLK~g~inpI~LdlTgVtgGTf~yNmgAl~nGH~Y~asLSG~~~-------SP---- 208 (442)
T PF15416_consen 140 SFDGEHVLVVSRGTTKPHLLKVSDLKAGEINPIPLDLTGVTGGTFSYNMGALVNGHSYLASLSGGKA-------SP---- 208 (442)
T ss_pred CCCCcEEEEEecCCCCceeeehhHhhcCCccceeeecccccCcccccchhhhcCCeEEEEeccCCCC-------Cc----
Confidence 45888888888766556655555434444333221222 367788888899999998766321 01
Q ss_pred hhhhhhhhhCCCCCCCCCceEEEEC-CC--CcEEEEeeCCC-------C-CccEEEEEe--CCEEEEEecCCCeEEEEeC
Q 016199 318 VSGMVVRYLGMPPMGKSSSGVFIVD-LD--GKPIAHYYDPE-------M-SLISSAIKI--GDHLYCGSVHHRGILHLDV 384 (393)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~v~~~d-~~--g~~~~~~~d~~-------~-~~~~~~~~~--~g~Lyigs~~~~~i~~~~~ 384 (393)
=.|+... |. -++++.+.... . -..+...+. +|++|+|...+..|.|+++
T Consensus 209 ------------------LKiY~w~tPts~PevIa~inV~~I~gAg~RhGDn~S~nlD~nGnGyiFFgdnaat~ilR~~v 270 (442)
T PF15416_consen 209 ------------------LKIYYWETPTSAPEVIADINVGDIPGAGNRHGDNFSLNLDENGNGYIFFGDNAATNILRFTV 270 (442)
T ss_pred ------------------eEEEEecCCCCCceEEEeeeeccCcccccccCcceeEEeccCCceEEEecCCccceEEEEEc
Confidence 1244442 32 24444443222 1 122333333 3789999888899999998
Q ss_pred CCCCCC
Q 016199 385 NQHPAR 390 (393)
Q Consensus 385 ~~~~~~ 390 (393)
..+.-+
T Consensus 271 sn~k~v 276 (442)
T PF15416_consen 271 SNYKTV 276 (442)
T ss_pred cCcccc
Confidence 877554
No 323
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=76.55 E-value=22 Score=37.39 Aligned_cols=67 Identities=22% Similarity=0.291 Sum_probs=48.7
Q ss_pred CceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeee---cCCCceeeeEECCCCCCCCceEEEEEeC--CCceEEE
Q 016199 85 PEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWI---NTGGRPLGIAFANSDPDADRITMIVADA--YKGLLKI 159 (393)
Q Consensus 85 Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~---~~~~~p~gl~~d~~G~~~~~~~L~v~~~--~~gl~~i 159 (393)
-.+|++||.-+++.++..|..|..|+.+.++ +.+.|. ...+.+.-+..||.| +|++.. ...|..+
T Consensus 599 lYDm~Vdp~~k~v~t~cQDrnirif~i~sgK---q~k~FKgs~~~eG~lIKv~lDPSg-------iY~atScsdktl~~~ 668 (1080)
T KOG1408|consen 599 LYDMAVDPTSKLVVTVCQDRNIRIFDIESGK---QVKSFKGSRDHEGDLIKVILDPSG-------IYLATSCSDKTLCFV 668 (1080)
T ss_pred EEEeeeCCCcceEEEEecccceEEEeccccc---eeeeecccccCCCceEEEEECCCc-------cEEEEeecCCceEEE
Confidence 4568999998888888889989999987654 244443 234668889999999 777765 3457777
Q ss_pred eC
Q 016199 160 SG 161 (393)
Q Consensus 160 d~ 161 (393)
|-
T Consensus 669 Df 670 (1080)
T KOG1408|consen 669 DF 670 (1080)
T ss_pred Ee
Confidence 63
No 324
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=76.39 E-value=14 Score=37.69 Aligned_cols=68 Identities=19% Similarity=0.141 Sum_probs=50.6
Q ss_pred CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCc-eEEEeC
Q 016199 83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKG-LLKISG 161 (393)
Q Consensus 83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g-l~~id~ 161 (393)
..+-+.+.+++.+.|.+|..||.|..|+...+ +.......-.|.-++.+++| .+++.....| +..+|.
T Consensus 260 s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~-----~t~~~ka~~~P~~iaWHp~g------ai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 260 SQVICCARSPSEDKLVLGCEDGSIILYDTTRG-----VTLLAKAEFIPTLIAWHPDG------AIFVVGSEQGELQCFDM 328 (545)
T ss_pred CcceEEecCcccceEEEEecCCeEEEEEcCCC-----eeeeeeecccceEEEEcCCC------cEEEEEcCCceEEEEEe
Confidence 35677888998888999999999999998765 33343444579999999999 6554444444 777774
No 325
>PHA02713 hypothetical protein; Provisional
Probab=76.04 E-value=87 Score=32.55 Aligned_cols=121 Identities=9% Similarity=-0.015 Sum_probs=61.4
Q ss_pred EEEEEeCCCCeEEEEecCccCC---CcEEEcCCCCEEEEEeCCC------CeEEEEEecCCCCcceeeeeccCCCCCC--
Q 016199 216 RLLSFDPVTKETKVLVSDLYFA---NGVVLSPDQTHLVYCETSM------RRCRKFYIKGKNAGRVEKFIETLPGLPD-- 284 (393)
Q Consensus 216 ~l~~~d~~t~~~~~~~~~l~~~---ngi~~s~dg~~l~v~~~~~------~ri~~~~~~g~~~~~~~~~~~~l~g~P~-- 284 (393)
.+.+||+.+++...+.. +..+ .+++. -++ .||+.+-.. ..+++|++..+. -.... .++ .|.
T Consensus 273 ~v~~yd~~~~~W~~l~~-mp~~r~~~~~a~-l~~-~IYviGG~~~~~~~~~~v~~Yd~~~n~---W~~~~-~m~-~~R~~ 344 (557)
T PHA02713 273 CILVYNINTMEYSVIST-IPNHIINYASAI-VDN-EIIIAGGYNFNNPSLNKVYKINIENKI---HVELP-PMI-KNRCR 344 (557)
T ss_pred CEEEEeCCCCeEEECCC-CCccccceEEEE-ECC-EEEEEcCCCCCCCccceEEEEECCCCe---EeeCC-CCc-chhhc
Confidence 47899999888776542 2211 23333 344 688775421 458889975431 11111 122 111
Q ss_pred eEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeC-CCCCccEEEE
Q 016199 285 NIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYD-PEMSLISSAI 363 (393)
Q Consensus 285 ~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d-~~~~~~~~~~ 363 (393)
.-+..-+|.+|+-...... .....+.++|++.+.-..+.. +.......+.
T Consensus 345 ~~~~~~~g~IYviGG~~~~-----------------------------~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~ 395 (557)
T PHA02713 345 FSLAVIDDTIYAIGGQNGT-----------------------------NVERTIECYTMGDDKWKMLPDMPIALSSYGMC 395 (557)
T ss_pred eeEEEECCEEEEECCcCCC-----------------------------CCCceEEEEECCCCeEEECCCCCcccccccEE
Confidence 1122236788874332100 001348889987665544432 2211222344
Q ss_pred EeCCEEEEEe
Q 016199 364 KIGDHLYCGS 373 (393)
Q Consensus 364 ~~~g~Lyigs 373 (393)
..+|+||+-+
T Consensus 396 ~~~g~IYviG 405 (557)
T PHA02713 396 VLDQYIYIIG 405 (557)
T ss_pred EECCEEEEEe
Confidence 5689999854
No 326
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=75.61 E-value=81 Score=32.21 Aligned_cols=84 Identities=12% Similarity=0.123 Sum_probs=50.5
Q ss_pred CEEEEEecCCeEEEEEcCCCCCcceeee-eecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEE-eCCc-e-EEEeec
Q 016199 95 KLIYTGCEDGWIKRVTLNDSPADSLVHN-WINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKI-SGNS-T-VLLTDE 170 (393)
Q Consensus 95 ~~L~~~~~~g~I~~~~~~~~~~~~~~~~-~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~i-d~~g-~-~~l~~~ 170 (393)
+.+.+.+.||++..++..+. ++. +...++....-...++| .=++.....|+.++ ...| + ..++..
T Consensus 76 d~~~i~s~DGkf~il~k~~r-----VE~sv~AH~~A~~~gRW~~dG------tgLlt~GEDG~iKiWSrsGMLRStl~Q~ 144 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSAR-----VERSISAHAAAISSGRWSPDG------AGLLTAGEDGVIKIWSRSGMLRSTVVQN 144 (737)
T ss_pred ceEEEEcCCceEEEecccch-----hhhhhhhhhhhhhhcccCCCC------ceeeeecCCceEEEEeccchHHHHHhhc
Confidence 35777888999988886654 332 22334455556677888 65565567776665 6667 2 222211
Q ss_pred cCCccccccccEEEcCCC-cEEEEe
Q 016199 171 AEGQKFKLTDGVDVADDG-MIYFTD 194 (393)
Q Consensus 171 ~~g~~~~~~~~l~~d~dG-~l~~td 194 (393)
+. .+..++.+|+. .+.++.
T Consensus 145 --~~---~v~c~~W~p~S~~vl~c~ 164 (737)
T KOG1524|consen 145 --EE---SIRCARWAPNSNSIVFCQ 164 (737)
T ss_pred --Cc---eeEEEEECCCCCceEEec
Confidence 21 23467788865 677764
No 327
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=75.33 E-value=17 Score=34.76 Aligned_cols=173 Identities=19% Similarity=0.183 Sum_probs=86.4
Q ss_pred CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeC-CCceEEEeC
Q 016199 83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADA-YKGLLKISG 161 (393)
Q Consensus 83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~-~~gl~~id~ 161 (393)
.+-.++-+|++ . +..|..|..|..|+.++.. .........|..+.+.+| . +++|... +..+...|-
T Consensus 198 kgVYClQYDD~-k-iVSGlrDnTikiWD~n~~~---c~~~L~GHtGSVLCLqyd--~------rviisGSSDsTvrvWDv 264 (499)
T KOG0281|consen 198 KGVYCLQYDDE-K-IVSGLRDNTIKIWDKNSLE---CLKILTGHTGSVLCLQYD--E------RVIVSGSSDSTVRVWDV 264 (499)
T ss_pred CceEEEEecch-h-hhcccccCceEEeccccHH---HHHhhhcCCCcEEeeecc--c------eEEEecCCCceEEEEec
Confidence 45566666643 3 6678888888888876543 111222223455666555 4 6666544 445666676
Q ss_pred Cc---eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCe-EE-EEecCccC
Q 016199 162 NS---TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKE-TK-VLVSDLYF 236 (393)
Q Consensus 162 ~g---~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~-~~-~~~~~l~~ 236 (393)
+. +..+....+ .+-++.+. +| +.++.+. ..+-+|+..+..+.. .+ ++......
T Consensus 265 ~tge~l~tlihHce-----aVLhlrf~-ng-~mvtcSk---------------DrsiaVWdm~sps~it~rrVLvGHrAa 322 (499)
T KOG0281|consen 265 NTGEPLNTLIHHCE-----AVLHLRFS-NG-YMVTCSK---------------DRSIAVWDMASPTDITLRRVLVGHRAA 322 (499)
T ss_pred cCCchhhHHhhhcc-----eeEEEEEe-CC-EEEEecC---------------CceeEEEeccCchHHHHHHHHhhhhhh
Confidence 54 222211111 11133332 33 4455321 123345555443211 11 12223444
Q ss_pred CCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECC-CCCEEEEEe
Q 016199 237 ANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDG-EGHYLIALA 299 (393)
Q Consensus 237 ~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~-~G~lwva~~ 299 (393)
.|.+.++ .+ +.|+.++..+|-.++.+. -.|+..+.|.-.||+--. .|++.|+..
T Consensus 323 VNvVdfd--~k-yIVsASgDRTikvW~~st------~efvRtl~gHkRGIAClQYr~rlvVSGS 377 (499)
T KOG0281|consen 323 VNVVDFD--DK-YIVSASGDRTIKVWSTST------CEFVRTLNGHKRGIACLQYRDRLVVSGS 377 (499)
T ss_pred eeeeccc--cc-eEEEecCCceEEEEeccc------eeeehhhhcccccceehhccCeEEEecC
Confidence 5666664 43 567777777777777532 225555667777877433 466666543
No 328
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=75.10 E-value=1.3e+02 Score=32.66 Aligned_cols=21 Identities=5% Similarity=0.055 Sum_probs=18.1
Q ss_pred CEEEEEecCCeEEEEEcCCCC
Q 016199 95 KLIYTGCEDGWIKRVTLNDSP 115 (393)
Q Consensus 95 ~~L~~~~~~g~I~~~~~~~~~ 115 (393)
++||+++.++.|+.+|..+++
T Consensus 195 g~lYv~t~~~~V~ALDa~TGk 215 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATGK 215 (764)
T ss_pred CEEEEECCCCeEEEEECCCCc
Confidence 479999999999999988765
No 329
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=74.67 E-value=5.3 Score=25.08 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=17.0
Q ss_pred EEEecCCCEEEEEecCCeEEEEEcC
Q 016199 88 LLYDAHSKLIYTGCEDGWIKRVTLN 112 (393)
Q Consensus 88 ia~d~~g~~L~~~~~~g~I~~~~~~ 112 (393)
++++ ++ ++|+++.+|.++.++.+
T Consensus 17 ~~v~-~g-~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 17 PAVA-GG-RVYVGTGDGNLYALDAA 39 (40)
T ss_dssp -EEC-TS-EEEEE-TTSEEEEEETT
T ss_pred CEEE-CC-EEEEEcCCCEEEEEeCC
Confidence 4554 34 79999999999999875
No 330
>PHA03098 kelch-like protein; Provisional
Probab=74.62 E-value=1.1e+02 Score=31.46 Aligned_cols=140 Identities=12% Similarity=0.017 Sum_probs=67.6
Q ss_pred CcEEEEEeCCCCeEEEEecCccCC---CcEEEcCCCCEEEEEeCC------CCeEEEEEecCCCCcceeeeeccCCC-CC
Q 016199 214 NGRLLSFDPVTKETKVLVSDLYFA---NGVVLSPDQTHLVYCETS------MRRCRKFYIKGKNAGRVEKFIETLPG-LP 283 (393)
Q Consensus 214 ~g~l~~~d~~t~~~~~~~~~l~~~---ngi~~s~dg~~l~v~~~~------~~ri~~~~~~g~~~~~~~~~~~~l~g-~P 283 (393)
...+++||+.+++.+.... +..| ...+ .-++ .+|+.+-. ...+.+|++..++ -... ...|. .-
T Consensus 357 ~~~v~~yd~~~~~W~~~~~-lp~~r~~~~~~-~~~~-~iYv~GG~~~~~~~~~~v~~yd~~t~~---W~~~-~~~p~~r~ 429 (534)
T PHA03098 357 LNTVESWKPGESKWREEPP-LIFPRYNPCVV-NVNN-LIYVIGGISKNDELLKTVECFSLNTNK---WSKG-SPLPISHY 429 (534)
T ss_pred cceEEEEcCCCCceeeCCC-cCcCCccceEE-EECC-EEEEECCcCCCCcccceEEEEeCCCCe---eeec-CCCCcccc
Confidence 3468999999888775432 2222 2222 2344 67776531 1468899975432 1111 12221 00
Q ss_pred CeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeC-CCCCccEEE
Q 016199 284 DNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYD-PEMSLISSA 362 (393)
Q Consensus 284 ~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d-~~~~~~~~~ 362 (393)
..-+.--+|.+|+........ .......+.++|++.+.-..+.. +.......+
T Consensus 430 ~~~~~~~~~~iyv~GG~~~~~--------------------------~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~ 483 (534)
T PHA03098 430 GGCAIYHDGKIYVIGGISYID--------------------------NIKVYNIVESYNPVTNKWTELSSLNFPRINASL 483 (534)
T ss_pred CceEEEECCEEEEECCccCCC--------------------------CCcccceEEEecCCCCceeeCCCCCcccccceE
Confidence 111222356777643311000 00011348889987655544432 111122233
Q ss_pred EEeCCEEEEEecC-----CCeEEEEeCCC
Q 016199 363 IKIGDHLYCGSVH-----HRGILHLDVNQ 386 (393)
Q Consensus 363 ~~~~g~Lyigs~~-----~~~i~~~~~~~ 386 (393)
...+++||+-+-. .+.+.+||++.
T Consensus 484 ~~~~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 484 CIFNNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred EEECCEEEEEcCCcCCcccceeEEEeCCC
Confidence 4457888875432 34677887653
No 331
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=74.55 E-value=93 Score=30.74 Aligned_cols=163 Identities=12% Similarity=0.112 Sum_probs=87.8
Q ss_pred EecCccCCCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeC--C
Q 016199 77 VGYGVLKGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADA--Y 153 (393)
Q Consensus 77 l~~g~~~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~--~ 153 (393)
+..+.-..-|+++|.+-..-||.+.. ++.+..+|....+.. .........+..+.++|.+-+ ...+|+. .
T Consensus 222 ~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~-~~~~~~ah~~~vn~~~fnp~~------~~ilAT~S~D 294 (422)
T KOG0264|consen 222 IFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSK-PSHSVKAHSAEVNCVAFNPFN------EFILATGSAD 294 (422)
T ss_pred EeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCC-CcccccccCCceeEEEeCCCC------CceEEeccCC
Confidence 33444345566777775555776655 667888887642211 012222224557899999866 4444433 4
Q ss_pred CceEEEeCCc-eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCC--CeE--
Q 016199 154 KGLLKISGNS-TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVT--KET-- 227 (393)
Q Consensus 154 ~gl~~id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t--~~~-- 227 (393)
+.|..+|... .+.+. ..++.. ..+..|..+|.. ++..+. ...++|..+|... .+.
T Consensus 295 ~tV~LwDlRnL~~~lh-~~e~H~-dev~~V~WSPh~etvLASS-----------------g~D~rl~vWDls~ig~eq~~ 355 (422)
T KOG0264|consen 295 KTVALWDLRNLNKPLH-TFEGHE-DEVFQVEWSPHNETVLASS-----------------GTDRRLNVWDLSRIGEEQSP 355 (422)
T ss_pred CcEEEeechhcccCce-eccCCC-cceEEEEeCCCCCceeEec-----------------ccCCcEEEEeccccccccCh
Confidence 5588888765 22221 223322 224577888876 555553 2245777777632 111
Q ss_pred --------EE-EecC--ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199 228 --------KV-LVSD--LYFANGVVLSPDQTHLVYCETSMRRCRKFYIK 265 (393)
Q Consensus 228 --------~~-~~~~--l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~ 265 (393)
+. +..+ ....+.+.+.|..-+++.+-+..+.+..+...
T Consensus 356 eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 356 EDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred hhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 10 1111 22345566667776666666666666666543
No 332
>PHA02790 Kelch-like protein; Provisional
Probab=74.22 E-value=1.1e+02 Score=31.21 Aligned_cols=128 Identities=8% Similarity=-0.112 Sum_probs=66.3
Q ss_pred cEEEEEeCCCCeEEEEecCccCC--CcEEEcCCCCEEEEEeCCC---CeEEEEEecCCCCcceeeeeccCCCCCC--eEE
Q 016199 215 GRLLSFDPVTKETKVLVSDLYFA--NGVVLSPDQTHLVYCETSM---RRCRKFYIKGKNAGRVEKFIETLPGLPD--NIR 287 (393)
Q Consensus 215 g~l~~~d~~t~~~~~~~~~l~~~--ngi~~s~dg~~l~v~~~~~---~ri~~~~~~g~~~~~~~~~~~~l~g~P~--~i~ 287 (393)
..+.+||+.+++.+.+. .+..+ +..+..-+| .||+..... ..+.+|++..+ +-. ....++ .|. ..+
T Consensus 331 ~sve~ydp~~n~W~~~~-~l~~~r~~~~~~~~~g-~IYviGG~~~~~~~ve~ydp~~~---~W~-~~~~m~-~~r~~~~~ 403 (480)
T PHA02790 331 TSVERWFHGDAAWVNMP-SLLKPRCNPAVASINN-VIYVIGGHSETDTTTEYLLPNHD---QWQ-FGPSTY-YPHYKSCA 403 (480)
T ss_pred CceEEEECCCCeEEECC-CCCCCCcccEEEEECC-EEEEecCcCCCCccEEEEeCCCC---EEE-eCCCCC-CccccceE
Confidence 35899999888776543 23222 112222355 688875432 34677886432 111 111122 221 112
Q ss_pred ECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeC-CCCCccEEEEEeC
Q 016199 288 YDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYD-PEMSLISSAIKIG 366 (393)
Q Consensus 288 ~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d-~~~~~~~~~~~~~ 366 (393)
..-+|.+|+... .+.++|++...-..+.. +.......+...+
T Consensus 404 ~~~~~~IYv~GG-------------------------------------~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~ 446 (480)
T PHA02790 404 LVFGRRLFLVGR-------------------------------------NAEFYCESSNTWTLIDDPIYPRDNPELIIVD 446 (480)
T ss_pred EEECCEEEEECC-------------------------------------ceEEecCCCCcEeEcCCCCCCccccEEEEEC
Confidence 223577887421 25667887655544443 2222334556678
Q ss_pred CEEEEEecCC-----CeEEEEeCCC
Q 016199 367 DHLYCGSVHH-----RGILHLDVNQ 386 (393)
Q Consensus 367 g~Lyigs~~~-----~~i~~~~~~~ 386 (393)
|+||+-+-.. +.+-+||+..
T Consensus 447 ~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 447 NKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred CEEEEECCcCCCcccceEEEEECCC
Confidence 8999875321 4566777654
No 333
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=73.84 E-value=12 Score=37.87 Aligned_cols=91 Identities=14% Similarity=0.229 Sum_probs=57.4
Q ss_pred CCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeee-eecCCCceeeeEECCCCCCCCceEEEEEeCCCceEE-EeC
Q 016199 84 GPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHN-WINTGGRPLGIAFANSDPDADRITMIVADAYKGLLK-ISG 161 (393)
Q Consensus 84 ~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~-~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~-id~ 161 (393)
.+..+++.+||++|-+.+.||-+..|+-+... +.. +....+.-+.++..+|| ++++....+-|+. +.-
T Consensus 292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e----Llg~mkSYFGGLLCvcWSPDG------KyIvtGGEDDLVtVwSf 361 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQDGFLRIFDFDTQE----LLGVMKSYFGGLLCVCWSPDG------KYIVTGGEDDLVTVWSF 361 (636)
T ss_pred cccceeEcCCCceEEEEecCceEEEeeccHHH----HHHHHHhhccceEEEEEcCCc------cEEEecCCcceEEEEEe
Confidence 56779999999988888899988877766533 111 11124667899999999 7766644444333 232
Q ss_pred CceEEEeeccCCccccccccEEEcC
Q 016199 162 NSTVLLTDEAEGQKFKLTDGVDVAD 186 (393)
Q Consensus 162 ~g~~~l~~~~~g~~~~~~~~l~~d~ 186 (393)
.-.+++ ..-+|.+ .+++.|++||
T Consensus 362 ~erRVV-ARGqGHk-SWVs~VaFDp 384 (636)
T KOG2394|consen 362 EERRVV-ARGQGHK-SWVSVVAFDP 384 (636)
T ss_pred ccceEE-Eeccccc-cceeeEeecc
Confidence 111222 2333433 5788888886
No 334
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=73.22 E-value=1.5e+02 Score=32.63 Aligned_cols=181 Identities=17% Similarity=0.190 Sum_probs=103.0
Q ss_pred CCceEEEecCCCEEEEEe-cCCeEEEEEcCCCCCcceeeee-ecCCCceeeeEECCCCCCCCceEEEEEeCCCc-eEEEe
Q 016199 84 GPEDLLYDAHSKLIYTGC-EDGWIKRVTLNDSPADSLVHNW-INTGGRPLGIAFANSDPDADRITMIVADAYKG-LLKIS 160 (393)
Q Consensus 84 ~Pe~ia~d~~g~~L~~~~-~~g~I~~~~~~~~~~~~~~~~~-~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g-l~~id 160 (393)
.+..+.++..++.+|... .+..|.+....+.. ...+ ....-.+.+++.|.-+ +++|..|.... +...+
T Consensus 438 ~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~----~~~~~~~g~~~~~~lavD~~~-----~~~y~tDe~~~~i~v~~ 508 (877)
T KOG1215|consen 438 NAVALDFDVLNNRIYWADLSDEKICRASQDGSS----ECELCGDGLCIPEGLAVDWIG-----DNIYWTDEGNCLIEVAD 508 (877)
T ss_pred cceEEEEEecCCEEEEEeccCCeEeeeccCCCc----cceEeccCccccCcEEEEecc-----CCceecccCCceeEEEE
Confidence 333344444444566554 36677776665544 2221 1212357899998754 26888876544 34444
Q ss_pred CCc--eEEEeeccCCccccccccEEEcC-CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE-ecCccC
Q 016199 161 GNS--TVLLTDEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL-VSDLYF 236 (393)
Q Consensus 161 ~~g--~~~l~~~~~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~-~~~l~~ 236 (393)
.+| ..++.... +..+..+++++ .|.+|.+|.+. .. ++-+-..+....+.+ ..+...
T Consensus 509 ~~g~~~~vl~~~~----l~~~r~~~v~p~~g~~~wtd~~~---------------~~-~i~ra~~dg~~~~~l~~~~~~~ 568 (877)
T KOG1215|consen 509 LDGSSRKVLVSKD----LDLPRSIAVDPEKGLMFWTDWGQ---------------PP-RIERASLDGSERAVLVTNGILW 568 (877)
T ss_pred ccCCceeEEEecC----CCCccceeeccccCeeEEecCCC---------------Cc-hhhhhcCCCCCceEEEeCCccC
Confidence 555 23332211 12345788998 57899987432 11 344444443333333 334788
Q ss_pred CCcEEEcCCCCEEEEEeCCCC-eEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEE
Q 016199 237 ANGVVLSPDQTHLVYCETSMR-RCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLI 296 (393)
Q Consensus 237 ~ngi~~s~dg~~l~v~~~~~~-ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwv 296 (393)
|+|++++--.+.+|+.+.... .+.+.+.+|... +.........|.++++-.+.-+|.
T Consensus 569 p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r---~~~~~~~~~~p~~~~~~~~~iyw~ 626 (877)
T KOG1215|consen 569 PNGLTIDYETDRLYWADAKLDYTIESANMDGQNR---RVVDSEDLPHPFGLSVFEDYIYWT 626 (877)
T ss_pred CCcceEEeecceeEEEcccCCcceeeeecCCCce---EEeccccCCCceEEEEecceeEEe
Confidence 999999977778999998777 688888766421 112222223677777655555554
No 335
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=73.17 E-value=3.1 Score=26.20 Aligned_cols=17 Identities=35% Similarity=0.690 Sum_probs=14.9
Q ss_pred ccccEEEcCCCcEEEEe
Q 016199 178 LTDGVDVADDGMIYFTD 194 (393)
Q Consensus 178 ~~~~l~~d~dG~l~~td 194 (393)
.+++|++|++|++|++-
T Consensus 14 ~~~~IavD~~GNiYv~G 30 (38)
T PF06739_consen 14 YGNGIAVDSNGNIYVTG 30 (38)
T ss_pred eEEEEEECCCCCEEEEE
Confidence 47799999999999984
No 336
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=72.72 E-value=28 Score=35.75 Aligned_cols=112 Identities=14% Similarity=0.147 Sum_probs=66.1
Q ss_pred CCCceEEEecCCCEEEEEecCC---eEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEE
Q 016199 83 KGPEDLLYDAHSKLIYTGCEDG---WIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKI 159 (393)
Q Consensus 83 ~~Pe~ia~d~~g~~L~~~~~~g---~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~i 159 (393)
..-.++.|...|+.|-+...++ +|+...+.... ....|....+.+..+.|.+.-+ .|+||+ ..-|..+
T Consensus 522 k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~---sQ~PF~kskG~vq~v~FHPs~p-----~lfVaT-q~~vRiY 592 (733)
T KOG0650|consen 522 KSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRK---SQSPFRKSKGLVQRVKFHPSKP-----YLFVAT-QRSVRIY 592 (733)
T ss_pred CccceeeeecCCceEEEeccCCCcceEEEEeccccc---ccCchhhcCCceeEEEecCCCc-----eEEEEe-ccceEEE
Confidence 3445688999998554444322 45544433221 0233333457788999998653 788884 5667777
Q ss_pred eCCceEEEe-eccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCC
Q 016199 160 SGNSTVLLT-DEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVT 224 (393)
Q Consensus 160 d~~g~~~l~-~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t 224 (393)
|... +.+. ....+ ...+..+++++.| +|+++ +..++++.||.+-
T Consensus 593 dL~k-qelvKkL~tg--~kwiS~msihp~GDnli~g------------------s~d~k~~WfDldl 638 (733)
T KOG0650|consen 593 DLSK-QELVKKLLTG--SKWISSMSIHPNGDNLILG------------------SYDKKMCWFDLDL 638 (733)
T ss_pred ehhH-HHHHHHHhcC--CeeeeeeeecCCCCeEEEe------------------cCCCeeEEEEccc
Confidence 7533 0111 11122 2456788999988 78887 3456788888753
No 337
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=72.69 E-value=69 Score=30.71 Aligned_cols=141 Identities=15% Similarity=0.149 Sum_probs=75.8
Q ss_pred CCcEEEEEeCCCCeEEE-EecCccCCCcEEEcCC-CCEEEEEeCCCCeEEEEEecCCCCcceeee-eccCCCCCCeEEEC
Q 016199 213 PNGRLLSFDPVTKETKV-LVSDLYFANGVVLSPD-QTHLVYCETSMRRCRKFYIKGKNAGRVEKF-IETLPGLPDNIRYD 289 (393)
Q Consensus 213 ~~g~l~~~d~~t~~~~~-~~~~l~~~ngi~~s~d-g~~l~v~~~~~~ri~~~~~~g~~~~~~~~~-~~~l~g~P~~i~~d 289 (393)
.+|.+..||+.|++.-. +...-...|++.|..+ +-..+.+.+..+.|..||+... ++...+ ..+.++-|. +++|
T Consensus 48 Sngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~--~e~a~~~~~~~~~~~f-~~ld 124 (376)
T KOG1188|consen 48 SNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQ--AESARISWTQQSGTPF-ICLD 124 (376)
T ss_pred cCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecc--hhhhheeccCCCCCcc-eEee
Confidence 46788999998764322 2222234688888753 4355666677899999998532 111111 223333332 4555
Q ss_pred C--CCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCCceEEEECC-C-CcEEEEeeCCC---CCccEEE
Q 016199 290 G--EGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDL-D-GKPIAHYYDPE---MSLISSA 362 (393)
Q Consensus 290 ~--~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~-~-g~~~~~~~d~~---~~~~~~~ 362 (393)
. ++++.-+... .......|+.+|. + .+.++.|.+.- ...+. .
T Consensus 125 ~nck~~ii~~GtE------------------------------~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lr-F 173 (376)
T KOG1188|consen 125 LNCKKNIIACGTE------------------------------LTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLR-F 173 (376)
T ss_pred ccCcCCeEEeccc------------------------------cccCceEEEEEEeccccchhhhhhhhccCcceeEE-e
Confidence 5 5555433211 1111134666664 2 33355554322 33333 2
Q ss_pred EEeCCEEEEEecCCCeEEEEeCCCC
Q 016199 363 IKIGDHLYCGSVHHRGILHLDVNQH 387 (393)
Q Consensus 363 ~~~~g~Lyigs~~~~~i~~~~~~~~ 387 (393)
.+.+-+|.+++-....+..||+++-
T Consensus 174 HP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 174 HPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred cCCCCCeEEeecccceEEeeecCCC
Confidence 5566566666556778888998654
No 338
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=72.66 E-value=33 Score=34.86 Aligned_cols=152 Identities=14% Similarity=0.158 Sum_probs=81.7
Q ss_pred eEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeec--CCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeC-Cc
Q 016199 87 DLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWIN--TGGRPLGIAFANSDPDADRITMIVADAYKGLLKISG-NS 163 (393)
Q Consensus 87 ~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~--~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~-~g 163 (393)
.++++...++|...+.||.++-|++.... ...+.. ..+-|..+.+...- -.+-+++...+.+.++. ..
T Consensus 401 ~l~~s~~~~~Llscs~DgTvr~w~~~~~~----~~~f~~~~e~g~Plsvd~~ss~-----~a~~~~s~~~~~~~~~~~ev 471 (577)
T KOG0642|consen 401 LLALSSTKDRLLSCSSDGTVRLWEPTEES----PCTFGEPKEHGYPLSVDRTSSR-----PAHSLASFRFGYTSIDDMEV 471 (577)
T ss_pred eeeecccccceeeecCCceEEeeccCCcC----ccccCCccccCCcceEeeccch-----hHhhhhhcccccccchhhhh
Confidence 46777776778888889999888876543 212221 12456666665332 02333333344444432 11
Q ss_pred ---eEEEeeccCCcc--ccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE-EecCccCC
Q 016199 164 ---TVLLTDEAEGQK--FKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV-LVSDLYFA 237 (393)
Q Consensus 164 ---~~~l~~~~~g~~--~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~-~~~~l~~~ 237 (393)
+..+.....+.+ ...++-++-.+.+.+-|+. .....+-.+|..++..-. ........
T Consensus 472 ~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~-----------------hed~~Ir~~dn~~~~~l~s~~a~~~sv 534 (577)
T KOG0642|consen 472 VSDLLIFESSASPGPRRYPQINKVVSHPTADITFTA-----------------HEDRSIRFFDNKTGKILHSMVAHKDSV 534 (577)
T ss_pred hhheeeccccCCCcccccCccceEEecCCCCeeEec-----------------ccCCceecccccccccchheeecccee
Confidence 222211111111 2334556666666666663 234456667766665322 12233446
Q ss_pred CcEEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199 238 NGVVLSPDQTHLVYCETSMRRCRKFYIK 265 (393)
Q Consensus 238 ngi~~s~dg~~l~v~~~~~~ri~~~~~~ 265 (393)
.++++.++|- .+.++...+++..+.++
T Consensus 535 tslai~~ng~-~l~s~s~d~sv~l~kld 561 (577)
T KOG0642|consen 535 TSLAIDPNGP-YLMSGSHDGSVRLWKLD 561 (577)
T ss_pred cceeecCCCc-eEEeecCCceeehhhcc
Confidence 7899999984 45677777887776654
No 339
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=72.41 E-value=93 Score=32.48 Aligned_cols=170 Identities=14% Similarity=0.128 Sum_probs=87.6
Q ss_pred cccccCceEEecCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeee--cCCCceeeeEECCCCCCCCce
Q 016199 68 ERMLQGSEKVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWI--NTGGRPLGIAFANSDPDADRI 145 (393)
Q Consensus 68 ~~~l~~~~~l~~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~--~~~~~p~gl~~d~~G~~~~~~ 145 (393)
.++|...|.+..+...--|++-+.+-.+-|.++...|.++.+|..+.+ +.+. ....-...+....||
T Consensus 114 ~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~stqk-----~~~el~~h~d~vQSa~WseDG------ 182 (1012)
T KOG1445|consen 114 SQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSVYITDISTQK-----TAVELSGHTDKVQSADWSEDG------ 182 (1012)
T ss_pred ccccCCcceeecCCceEEEEeecccCcCceEEeccCceEEEEEcccCc-----eeecccCCchhhhccccccCC------
Confidence 455655555555544556778788744335555566779999987653 2121 112334567778899
Q ss_pred EEEEEeC-CCceEEEeCCc-eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhccc---CCCcEEEE
Q 016199 146 TMIVADA-YKGLLKISGNS-TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEG---KPNGRLLS 219 (393)
Q Consensus 146 ~L~v~~~-~~gl~~id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~---~~~g~l~~ 219 (393)
.|+...- +..|..+|+.. .+.+ ...++.. ++ .|. -+|.++- -..+..+ ...-.|..
T Consensus 183 ~llatscKdkqirifDPRa~~~pi-Q~te~H~-----~~---rdsRv~w~Gn~---------~rlisTGF~~~R~reV~~ 244 (1012)
T KOG1445|consen 183 KLLATSCKDKQIRIFDPRASMEPI-QTTEGHG-----GM---RDSRVLWAGNW---------ERLISTGFTTKRIREVRA 244 (1012)
T ss_pred ceEeeecCCcceEEeCCccCCCcc-ccccccc-----cc---hhheeeeccch---------hhhhhcccchhhheeeee
Confidence 6655432 55688888765 2221 1112221 11 233 3455431 0000000 11123555
Q ss_pred EeCCCCeEEEEecCccCCCcEE---EcCCCCEEEEEeCCCCeEEEEEecC
Q 016199 220 FDPVTKETKVLVSDLYFANGVV---LSPDQTHLVYCETSMRRCRKFYIKG 266 (393)
Q Consensus 220 ~d~~t~~~~~~~~~l~~~ngi~---~s~dg~~l~v~~~~~~ri~~~~~~g 266 (393)
||...-..-...-.+....|+- ++||-+.++.+.-+.+.|+.+.+..
T Consensus 245 ~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d 294 (1012)
T KOG1445|consen 245 YDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQD 294 (1012)
T ss_pred eeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecC
Confidence 6642110000000112223333 6789889999999999999988753
No 340
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=71.08 E-value=85 Score=28.79 Aligned_cols=62 Identities=13% Similarity=0.266 Sum_probs=36.8
Q ss_pred CCcEEEEeCCCccchhhheehhcccCCCcEE-EEEeCCCCeEEEEe----cCccCCCcEEEcCCCCEEEEEeCCCCeEEE
Q 016199 187 DGMIYFTDASNKYYLREYILDIFEGKPNGRL-LSFDPVTKETKVLV----SDLYFANGVVLSPDQTHLVYCETSMRRCRK 261 (393)
Q Consensus 187 dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l-~~~d~~t~~~~~~~----~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~ 261 (393)
-|.||+.++.. .....| +.||..+++.+... ........|...|..+.||+-+- +-+..
T Consensus 179 CGvLY~v~S~~--------------~~~~~i~yaydt~~~~~~~~~ipf~N~y~~~~~idYNP~D~~LY~wdn--g~~l~ 242 (249)
T KOG3545|consen 179 CGVLYVVHSYN--------------CTHTQISYAYDTTTGTQERIDLPFPNPYSYATMIDYNPRDRRLYAWDN--GHQLT 242 (249)
T ss_pred eeeeEEEeccc--------------cCCceEEEEEEcCCCceecccccccchhhhhhccCCCcccceeeEecC--CcEEE
Confidence 57788876543 112234 68888777654322 12334456667786678888764 55666
Q ss_pred EEe
Q 016199 262 FYI 264 (393)
Q Consensus 262 ~~~ 264 (393)
|++
T Consensus 243 y~l 245 (249)
T KOG3545|consen 243 YNL 245 (249)
T ss_pred EEe
Confidence 665
No 341
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=70.03 E-value=9 Score=22.56 Aligned_cols=16 Identities=31% Similarity=0.493 Sum_probs=12.2
Q ss_pred CCCcEEEEEeCCCCeE
Q 016199 212 KPNGRLLSFDPVTKET 227 (393)
Q Consensus 212 ~~~g~l~~~d~~t~~~ 227 (393)
+..+.++.+|.++|+.
T Consensus 13 ~~~g~l~a~d~~~G~~ 28 (33)
T smart00564 13 STDGTLYALDAKTGEI 28 (33)
T ss_pred cCCCEEEEEEcccCcE
Confidence 3457899999987765
No 342
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=69.51 E-value=16 Score=36.40 Aligned_cols=30 Identities=20% Similarity=0.204 Sum_probs=21.5
Q ss_pred cCCCcEEEcCCCCEEEEEeCCCCeEEEEEecC
Q 016199 235 YFANGVVLSPDQTHLVYCETSMRRCRKFYIKG 266 (393)
Q Consensus 235 ~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g 266 (393)
..+.-+++||.+..+.+-+ .++|.+|.++.
T Consensus 358 ~~~~~~~~Sp~~~~Ll~e~--~gki~~~~l~N 387 (733)
T COG4590 358 QAPQLVAMSPNQAYLLSED--QGKIRLAQLEN 387 (733)
T ss_pred cCcceeeeCcccchheeec--CCceEEEEecC
Confidence 4567788999997765543 46788887764
No 343
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.45 E-value=1.7e+02 Score=31.67 Aligned_cols=53 Identities=13% Similarity=0.204 Sum_probs=32.0
Q ss_pred CCcEEEEEeCC----CC-eEEEEecCccCCCcEEEcCCCCE-EEEEeCCCCeEEEEEecCC
Q 016199 213 PNGRLLSFDPV----TK-ETKVLVSDLYFANGVVLSPDQTH-LVYCETSMRRCRKFYIKGK 267 (393)
Q Consensus 213 ~~g~l~~~d~~----t~-~~~~~~~~l~~~ngi~~s~dg~~-l~v~~~~~~ri~~~~~~g~ 267 (393)
.+|.|++|.-+ .+ +......+-....|+++-.|+.. ++++. ..+|..|.++|.
T Consensus 145 ~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~T--t~~V~~y~l~gr 203 (933)
T KOG2114|consen 145 TNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVAT--TEQVMLYSLSGR 203 (933)
T ss_pred cCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEe--cceeEEEEecCC
Confidence 35667777422 11 12222333455689999999987 44443 478999998754
No 344
>PHA02790 Kelch-like protein; Provisional
Probab=69.43 E-value=1.3e+02 Score=30.43 Aligned_cols=113 Identities=8% Similarity=0.005 Sum_probs=56.3
Q ss_pred eEEEEEcCCCCCcceeeeeecCC-Cce-eeeEECCCCCCCCceEEEEEeCCC----ceEEEeCCc-eEEEeeccCCcccc
Q 016199 105 WIKRVTLNDSPADSLVHNWINTG-GRP-LGIAFANSDPDADRITMIVADAYK----GLLKISGNS-TVLLTDEAEGQKFK 177 (393)
Q Consensus 105 ~I~~~~~~~~~~~~~~~~~~~~~-~~p-~gl~~d~~G~~~~~~~L~v~~~~~----gl~~id~~g-~~~l~~~~~g~~~~ 177 (393)
.+.+|++..+. +....+.. .+. .+.+. -+| +||+..... .+.++|++. .-....... .+ +
T Consensus 332 sve~ydp~~n~----W~~~~~l~~~r~~~~~~~-~~g------~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~-~~-r 398 (480)
T PHA02790 332 SVERWFHGDAA----WVNMPSLLKPRCNPAVAS-INN------VIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY-YP-H 398 (480)
T ss_pred ceEEEECCCCe----EEECCCCCCCCcccEEEE-ECC------EEEEecCcCCCCccEEEEeCCCCEEEeCCCCC-Cc-c
Confidence 46777776554 55443321 111 12222 367 899874322 255677654 111111111 11 1
Q ss_pred ccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccC---CCcEEEcCCCCEEEEEeC
Q 016199 178 LTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYF---ANGVVLSPDQTHLVYCET 254 (393)
Q Consensus 178 ~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~---~ngi~~s~dg~~l~v~~~ 254 (393)
.-.. ++.-+|.||+.- |...+|||++++.+.+.. +.. -.++++. +| .||+.+-
T Consensus 399 ~~~~-~~~~~~~IYv~G--------------------G~~e~ydp~~~~W~~~~~-m~~~r~~~~~~v~-~~-~IYviGG 454 (480)
T PHA02790 399 YKSC-ALVFGRRLFLVG--------------------RNAEFYCESSNTWTLIDD-PIYPRDNPELIIV-DN-KLLLIGG 454 (480)
T ss_pred ccce-EEEECCEEEEEC--------------------CceEEecCCCCcEeEcCC-CCCCccccEEEEE-CC-EEEEECC
Confidence 1112 233468899871 347789999988887643 222 2344443 44 5777653
No 345
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=69.14 E-value=94 Score=28.53 Aligned_cols=145 Identities=12% Similarity=0.120 Sum_probs=72.3
Q ss_pred ceeeeEECCCCCCCCceEEEEE-e---CCCceEEEeCCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhh
Q 016199 129 RPLGIAFANSDPDADRITMIVA-D---AYKGLLKISGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLRE 203 (393)
Q Consensus 129 ~p~gl~~d~~G~~~~~~~L~v~-~---~~~gl~~id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~ 203 (393)
.+...++.++| ..+.+ . ....|+....++ ...+. .+..+. .-.+|++|.+|+.+...
T Consensus 25 ~~~s~AvS~dg------~~~A~v~~~~~~~~L~~~~~~~~~~~~~---~g~~l~---~PS~d~~g~~W~v~~~~------ 86 (253)
T PF10647_consen 25 DVTSPAVSPDG------SRVAAVSEGDGGRSLYVGPAGGPVRPVL---TGGSLT---RPSWDPDGWVWTVDDGS------ 86 (253)
T ss_pred cccceEECCCC------CeEEEEEEcCCCCEEEEEcCCCcceeec---cCCccc---cccccCCCCEEEEEcCC------
Confidence 45667777777 43322 2 233466665555 32221 222222 33688999999986321
Q ss_pred heehhcccCCCcEEEEEeCCCCeEEEE---ecCcc-CCCcEEEcCCCCEEEEEe--CCCCeEEEEEecCCCCcceeeeec
Q 016199 204 YILDIFEGKPNGRLLSFDPVTKETKVL---VSDLY-FANGVVLSPDQTHLVYCE--TSMRRCRKFYIKGKNAGRVEKFIE 277 (393)
Q Consensus 204 ~~~~~~e~~~~g~l~~~d~~t~~~~~~---~~~l~-~~ngi~~s~dg~~l~v~~--~~~~ri~~~~~~g~~~~~~~~~~~ 277 (393)
...++.+ +..+++.... ...+. ....+.+++||..+-+.- ...++|+.--+..+..+....+..
T Consensus 87 ---------~~~~~~~-~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~ 156 (253)
T PF10647_consen 87 ---------GGVRVVR-DSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTG 156 (253)
T ss_pred ---------CceEEEE-ecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceecc
Confidence 1222333 3223333222 11122 567899999998664443 234677776654322221111110
Q ss_pred ------cCCCCCCeEEECCCCCEEEEEecC
Q 016199 278 ------TLPGLPDNIRYDGEGHYLIALATE 301 (393)
Q Consensus 278 ------~l~g~P~~i~~d~~G~lwva~~~~ 301 (393)
....-...+....++.+.|.....
T Consensus 157 ~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~ 186 (253)
T PF10647_consen 157 PRRVAPPLLSDVTDVAWSDDSTLVVLGRSA 186 (253)
T ss_pred ceEecccccCcceeeeecCCCEEEEEeCCC
Confidence 111123456667778888776543
No 346
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=69.03 E-value=72 Score=31.18 Aligned_cols=68 Identities=12% Similarity=0.142 Sum_probs=45.3
Q ss_pred CCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeec--CCCceeeeEECCCCCCCCceEEEEEeCCCc-eEEEe
Q 016199 84 GPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWIN--TGGRPLGIAFANSDPDADRITMIVADAYKG-LLKIS 160 (393)
Q Consensus 84 ~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~--~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g-l~~id 160 (393)
.--+++|+..++.||.|-..+.|+.-+.++++ .+..+.+ ..+..++|...+.. ++++.....+ +..+|
T Consensus 107 NIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~q---si~V~~~~~~~~~VY~m~~~P~D------N~~~~~t~~~~V~~~D 177 (609)
T KOG4227|consen 107 NIFSLEFDLENRFLYSGERWGTVIKHDIETKQ---SIYVANENNNRGDVYHMDQHPTD------NTLIVVTRAKLVSFID 177 (609)
T ss_pred ceEEEEEccCCeeEecCCCcceeEeeecccce---eeeeecccCcccceeecccCCCC------ceEEEEecCceEEEEe
Confidence 34468899888889999889999988887764 1222222 23467889888866 6666555555 44455
No 347
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=67.83 E-value=1.1e+02 Score=28.76 Aligned_cols=47 Identities=19% Similarity=0.122 Sum_probs=29.3
Q ss_pred CcEEEEEeCCCCeEEEE---ecCccCCCcEEEcCCCCEEEEEeCCCCeEEEE
Q 016199 214 NGRLLSFDPVTKETKVL---VSDLYFANGVVLSPDQTHLVYCETSMRRCRKF 262 (393)
Q Consensus 214 ~g~l~~~d~~t~~~~~~---~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~ 262 (393)
.|.||.-+-.++..+.+ ..++..+|-++.+.|++.+.|.+.+ ..++-
T Consensus 147 ~Gail~T~DgGk~Wk~l~e~~v~~~~~n~ia~s~dng~vaVg~rG--s~f~T 196 (339)
T COG4447 147 QGAILKTTDGGKNWKALVEKAVGLAVPNEIARSADNGYVAVGARG--SFFST 196 (339)
T ss_pred cceEEEecCCcccHhHhcccccchhhhhhhhhhccCCeEEEecCc--ceEec
Confidence 34566655443433333 2345678999999999888887763 44443
No 348
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=66.91 E-value=24 Score=36.96 Aligned_cols=203 Identities=14% Similarity=0.184 Sum_probs=97.8
Q ss_pred cCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeC-CCceE
Q 016199 79 YGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADA-YKGLL 157 (393)
Q Consensus 79 ~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~-~~gl~ 157 (393)
.|.-..-|++.++.+..+|-.|+.+|.|..||++... .+.........+..+.|.+-| .+...-. ...+-
T Consensus 67 ~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk---~vrtLtgh~~~~~sv~f~P~~------~~~a~gStdtd~~ 137 (825)
T KOG0267|consen 67 TGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK---IVRTLTGHLLNITSVDFHPYG------EFFASGSTDTDLK 137 (825)
T ss_pred eccCCcceeeecCcchhhhcccccCCceeeeehhhhh---hhhhhhccccCcceeeeccce------EEeccccccccce
Confidence 4444566889999988766677889999999987532 123222222345667788877 4432111 12233
Q ss_pred EEe--CCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE-EecC
Q 016199 158 KIS--GNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV-LVSD 233 (393)
Q Consensus 158 ~id--~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~-~~~~ 233 (393)
.+| ..| ... ..+ ....++-+.+.|+|+ |+.+.+. ...+-.+|...|++.. +...
T Consensus 138 iwD~Rk~Gc~~~----~~s-~~~vv~~l~lsP~Gr-~v~~g~e----------------d~tvki~d~~agk~~~ef~~~ 195 (825)
T KOG0267|consen 138 IWDIRKKGCSHT----YKS-HTRVVDVLRLSPDGR-WVASGGE----------------DNTVKIWDLTAGKLSKEFKSH 195 (825)
T ss_pred ehhhhccCceee----ecC-CcceeEEEeecCCCc-eeeccCC----------------cceeeeecccccccccccccc
Confidence 333 334 222 222 123355677888886 4544221 2345556654444322 2211
Q ss_pred ccCCCcEEEcCCCCEEEEEeCCCCeEEEEE-ecCCCCcceeeeeccCC--CCCCeEEECCCCCEEEEEecCcchhhhhhh
Q 016199 234 LYFANGVVLSPDQTHLVYCETSMRRCRKFY-IKGKNAGRVEKFIETLP--GLPDNIRYDGEGHYLIALATEFSTYWDLAY 310 (393)
Q Consensus 234 l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~-~~g~~~~~~~~~~~~l~--g~P~~i~~d~~G~lwva~~~~r~~~~~~~~ 310 (393)
-...+.+.++|.+ +|.-.... .+..+|+ ++ .++......+ .-+.+.+++++|...... ....+.+...
T Consensus 196 e~~v~sle~hp~e-~Lla~Gs~-d~tv~f~dle-----tfe~I~s~~~~~~~v~~~~fn~~~~~~~~G--~q~sl~~~~~ 266 (825)
T KOG0267|consen 196 EGKVQSLEFHPLE-VLLAPGSS-DRTVRFWDLE-----TFEVISSGKPETDGVRSLAFNPDGKIVLSG--EQISLSESRT 266 (825)
T ss_pred cccccccccCchh-hhhccCCC-Cceeeeeccc-----eeEEeeccCCccCCceeeeecCCceeeecC--chhhhhhhhc
Confidence 2223334444443 44444433 3444544 32 2333322212 224556688888754422 1222333333
Q ss_pred cCcchhhhhhh
Q 016199 311 RYPFIRKVSGM 321 (393)
Q Consensus 311 ~~~~~r~~~~~ 321 (393)
....+|+-+++
T Consensus 267 a~ah~~~~~~~ 277 (825)
T KOG0267|consen 267 ASAHVRKTLAR 277 (825)
T ss_pred ccceeeccccc
Confidence 33445554443
No 349
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=66.44 E-value=1.8e+02 Score=30.76 Aligned_cols=107 Identities=11% Similarity=0.101 Sum_probs=63.8
Q ss_pred CccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeee---cCCC---ceeeeEECCCCCCCCceEEEEEeCC
Q 016199 80 GVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWI---NTGG---RPLGIAFANSDPDADRITMIVADAY 153 (393)
Q Consensus 80 g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~---~~~~---~p~gl~~d~~G~~~~~~~L~v~~~~ 153 (393)
|.-..-.++-+.|.+..|..++.|..+..|.++...+. +.... ..++ +-.|-.+.+++ +.+++..+
T Consensus 265 GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGi--Wv~~vRlGe~gg~a~GF~g~lw~~n~------~~ii~~g~ 336 (764)
T KOG1063|consen 265 GHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGI--WVDVVRLGEVGGSAGGFWGGLWSPNS------NVIIAHGR 336 (764)
T ss_pred CcccceEEEEEccchhhheecccCcceEEEecCCccce--EEEEEEeecccccccceeeEEEcCCC------CEEEEecc
Confidence 33344555788899866888899999999998865421 22221 1122 23456677888 88888776
Q ss_pred Cc-eEEEe-CCceEEEeeccCCccccccccEEEcCCCcEEEEe
Q 016199 154 KG-LLKIS-GNSTVLLTDEAEGQKFKLTDGVDVADDGMIYFTD 194 (393)
Q Consensus 154 ~g-l~~id-~~g~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td 194 (393)
.| +..+. .+..........+..+..+.+|+.+|.|..+++.
T Consensus 337 ~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsv 379 (764)
T KOG1063|consen 337 TGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSV 379 (764)
T ss_pred cCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEe
Confidence 55 44443 2321111011111223457799999999888874
No 350
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=66.19 E-value=2.2e+02 Score=31.71 Aligned_cols=64 Identities=14% Similarity=0.141 Sum_probs=43.8
Q ss_pred EEEecCCCEEEEEecCCeEEEE----EcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEe
Q 016199 88 LLYDAHSKLIYTGCEDGWIKRV----TLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKIS 160 (393)
Q Consensus 88 ia~d~~g~~L~~~~~~g~I~~~----~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id 160 (393)
+.+-.+.+.++++..+|.|+.+ +++... ++.+.....+..+++..||+ +.|.+++..+.|+.++
T Consensus 81 ~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~----~E~VG~vd~GI~a~~WSPD~-----Ella~vT~~~~l~~mt 148 (928)
T PF04762_consen 81 FQYLADSESLCIALASGDIILVREDPDPDEDE----IEIVGSVDSGILAASWSPDE-----ELLALVTGEGNLLLMT 148 (928)
T ss_pred EEeccCCCcEEEEECCceEEEEEccCCCCCce----eEEEEEEcCcEEEEEECCCc-----CEEEEEeCCCEEEEEe
Confidence 4455566678999999999988 444444 66666666788999999998 2345554455566554
No 351
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.34 E-value=1.5e+02 Score=29.31 Aligned_cols=72 Identities=15% Similarity=0.107 Sum_probs=48.9
Q ss_pred CCCceEEEecCCC-EEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeC
Q 016199 83 KGPEDLLYDAHSK-LIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISG 161 (393)
Q Consensus 83 ~~Pe~ia~d~~g~-~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~ 161 (393)
..-.+++++|..+ .+-.++.+..|..++..+.. .+..+. ....+-..++|.|. ++.||.|+..++|+.+|.
T Consensus 194 ~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~---~vssy~-a~~~~wSC~wDlde----~h~IYaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 194 SFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC---VVSSYI-AYNQIWSCCWDLDE----RHVIYAGLQNGMVLVYDM 265 (463)
T ss_pred hhhhhhccCccccceeeeeccCceEEEEecccce---eeehee-ccCCceeeeeccCC----cceeEEeccCceEEEEEc
Confidence 3455688888665 46667777888888887653 133332 23456677777654 347999998888999985
Q ss_pred C
Q 016199 162 N 162 (393)
Q Consensus 162 ~ 162 (393)
.
T Consensus 266 R 266 (463)
T KOG1645|consen 266 R 266 (463)
T ss_pred c
Confidence 3
No 352
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=63.79 E-value=1.9e+02 Score=30.26 Aligned_cols=103 Identities=11% Similarity=0.072 Sum_probs=61.2
Q ss_pred eEEEEEeCCCceEEEeCCc-eEEEee-ccCC--ccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEE
Q 016199 145 ITMIVADAYKGLLKISGNS-TVLLTD-EAEG--QKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLS 219 (393)
Q Consensus 145 ~~L~v~~~~~gl~~id~~g-~~~l~~-~~~g--~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~ 219 (393)
+-||+++..++|..+|... ...+-. .... ...+.+.++...+ | ..+++- .+..++..
T Consensus 65 HiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsa-----------------sGDsT~r~ 126 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSA-----------------SGDSTIRP 126 (720)
T ss_pred ceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEc-----------------cCCceeee
Confidence 4689998888888887654 111100 0001 1123345666777 5 455553 23345677
Q ss_pred EeCCCCeEEE---EecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199 220 FDPVTKETKV---LVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIK 265 (393)
Q Consensus 220 ~d~~t~~~~~---~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~ 265 (393)
||.+++++.- +.......-.+++.+++..+++++.-++.|..+|+.
T Consensus 127 Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R 175 (720)
T KOG0321|consen 127 WDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCR 175 (720)
T ss_pred eeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEe
Confidence 7776665432 222334456688888888888888878888888875
No 353
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=63.59 E-value=28 Score=21.65 Aligned_cols=39 Identities=26% Similarity=0.381 Sum_probs=21.0
Q ss_pred CcEEEEeeCCCCCccEEEEEeCCEEEEEecCCCeEEEEeCC
Q 016199 345 GKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLDVN 385 (393)
Q Consensus 345 g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~ 385 (393)
|+++-.+..+. ...+.....+|+||+++. +..+..||.+
T Consensus 1 G~~~W~~~~~~-~~~~~~~v~~g~vyv~~~-dg~l~ald~~ 39 (40)
T PF13570_consen 1 GKVLWSYDTGG-PIWSSPAVAGGRVYVGTG-DGNLYALDAA 39 (40)
T ss_dssp S-EEEEEE-SS----S--EECTSEEEEE-T-TSEEEEEETT
T ss_pred CceeEEEECCC-CcCcCCEEECCEEEEEcC-CCEEEEEeCC
Confidence 34444444433 111333557899999984 6688888864
No 354
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=63.17 E-value=1.2e+02 Score=27.49 Aligned_cols=52 Identities=13% Similarity=0.153 Sum_probs=27.3
Q ss_pred EEEEEeCCCCeEEEEEecCCCCcceeeeecc--CCCC----CCeEEECCCCCEEEEEecC
Q 016199 248 HLVYCETSMRRCRKFYIKGKNAGRVEKFIET--LPGL----PDNIRYDGEGHYLIALATE 301 (393)
Q Consensus 248 ~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~--l~g~----P~~i~~d~~G~lwva~~~~ 301 (393)
.++++.+....|.-|++.-+. -+.++-.. ..|+ -..+++|+.|++.++....
T Consensus 195 ~m~~sgsqdktirfwdlrv~~--~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~d 252 (350)
T KOG0641|consen 195 AMFASGSQDKTIRFWDLRVNS--CVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHAD 252 (350)
T ss_pred cEEEccCCCceEEEEeeeccc--eeeeccCcccCCCcccceeEEEEECCCcceeeeccCC
Confidence 566666666666666653211 11111000 1111 2347899999999876644
No 355
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=62.79 E-value=92 Score=33.13 Aligned_cols=98 Identities=15% Similarity=0.121 Sum_probs=60.3
Q ss_pred CCceEEEeCCc-eEEEeeccCC--ccccccccEEEcC-CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCC----
Q 016199 153 YKGLLKISGNS-TVLLTDEAEG--QKFKLTDGVDVAD-DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVT---- 224 (393)
Q Consensus 153 ~~gl~~id~~g-~~~l~~~~~g--~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t---- 224 (393)
-.+|+.+++++ .....-...+ ..+..+++|.... +.++.++. ..+|.|-.||...
T Consensus 61 ~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~-----------------s~nG~i~vWdlnk~~rn 123 (839)
T KOG0269|consen 61 LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATC-----------------STNGVISVWDLNKSIRN 123 (839)
T ss_pred ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheee-----------------cCCCcEEEEecCccccc
Confidence 35677887766 2111111111 1234466777664 23555554 4467788888743
Q ss_pred CeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCC
Q 016199 225 KETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGK 267 (393)
Q Consensus 225 ~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~ 267 (393)
+.+..+...-..+|.++|++-.-.++++.+-.+.|-.||+..+
T Consensus 124 k~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~ 166 (839)
T KOG0269|consen 124 KLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK 166 (839)
T ss_pred hhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc
Confidence 1112233344568899999888889999999999999999744
No 356
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=62.57 E-value=1.7e+02 Score=30.02 Aligned_cols=76 Identities=14% Similarity=0.167 Sum_probs=42.7
Q ss_pred CCC-ceEEEecCCCEEEEEecCCeEEEEEcCCCCC------cc-eeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCC
Q 016199 83 KGP-EDLLYDAHSKLIYTGCEDGWIKRVTLNDSPA------DS-LVHNWINTGGRPLGIAFANSDPDADRITMIVADAYK 154 (393)
Q Consensus 83 ~~P-e~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~------~~-~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~ 154 (393)
.+| -++++..+++.+|.|.+||.|.+|+.-.... .. ....+.......-++++...- .+|..|++++
T Consensus 344 ~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~-----~~Llscs~Dg 418 (577)
T KOG0642|consen 344 EGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK-----DRLLSCSSDG 418 (577)
T ss_pred cCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc-----cceeeecCCc
Confidence 555 4567778999999999999999995532110 00 000111111223355555432 1677776666
Q ss_pred ceEEEeCCc
Q 016199 155 GLLKISGNS 163 (393)
Q Consensus 155 gl~~id~~g 163 (393)
-+..+++.+
T Consensus 419 Tvr~w~~~~ 427 (577)
T KOG0642|consen 419 TVRLWEPTE 427 (577)
T ss_pred eEEeeccCC
Confidence 666666544
No 357
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=62.08 E-value=2.4e+02 Score=30.67 Aligned_cols=55 Identities=13% Similarity=0.188 Sum_probs=34.6
Q ss_pred CCceEEEECC-CCcEEEEeeCCC------------------CCccEE-EEEeCCEEEEEecCCCeEEEEeCCCCC
Q 016199 334 SSSGVFIVDL-DGKPIAHYYDPE------------------MSLISS-AIKIGDHLYCGSVHHRGILHLDVNQHP 388 (393)
Q Consensus 334 ~~~~v~~~d~-~g~~~~~~~d~~------------------~~~~~~-~~~~~g~Lyigs~~~~~i~~~~~~~~~ 388 (393)
+.+.|..+|. .|+++-.....+ ...... +.-.+|.+|+++-.+.++..||.+...
T Consensus 639 p~G~l~AiDl~tGk~~W~~~~g~~~~~~p~~~~~~~~~~~g~p~~gG~l~TagglvF~~gt~d~~l~A~D~~tGk 713 (764)
T TIGR03074 639 PWGYMAAIDLKTGKVVWQHPNGTVRDTGPMGIRMPLPIPIGVPTLGGPLATAGGLVFIGATQDNYLRAYDLSTGK 713 (764)
T ss_pred CcEEEEEEECCCCcEeeeeECCccccccccccccccccccCCcccCCcEEEcCCEEEEEeCCCCEEEEEECCCCc
Confidence 4677999997 588776654321 111122 344568888855467788889876544
No 358
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=61.85 E-value=1.5e+02 Score=30.38 Aligned_cols=55 Identities=24% Similarity=0.239 Sum_probs=33.6
Q ss_pred CceeeeEECCCCCCCCceEEEEEeCCCceEEE-eCCceEEE---eeccCCccccccccEEEcCCCcEEEE
Q 016199 128 GRPLGIAFANSDPDADRITMIVADAYKGLLKI-SGNSTVLL---TDEAEGQKFKLTDGVDVADDGMIYFT 193 (393)
Q Consensus 128 ~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~i-d~~g~~~l---~~~~~g~~~~~~~~l~~d~dG~l~~t 193 (393)
+.++..+|.+|| +.+.+-..+|.+|+ +-+..+++ ...+.| .-.+...|||...++
T Consensus 291 g~in~f~FS~DG------~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGG-----LLCvcWSPDGKyIvt 349 (636)
T KOG2394|consen 291 GSINEFAFSPDG------KYLATVSQDGFLRIFDFDTQELLGVMKSYFGG-----LLCVCWSPDGKYIVT 349 (636)
T ss_pred ccccceeEcCCC------ceEEEEecCceEEEeeccHHHHHHHHHhhccc-----eEEEEEcCCccEEEe
Confidence 457889999999 77666666775543 43331111 112222 236789999987776
No 359
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=61.51 E-value=1e+02 Score=31.61 Aligned_cols=102 Identities=17% Similarity=0.231 Sum_probs=58.3
Q ss_pred cEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec-CccCCCcEEEcCCCCEEEEEeCC--CC
Q 016199 181 GVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS-DLYFANGVVLSPDQTHLVYCETS--MR 257 (393)
Q Consensus 181 ~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~-~l~~~ngi~~s~dg~~l~v~~~~--~~ 257 (393)
.++..|.|+-+..-.+. +...+-+.|.+....++.+.+.. +-.+.|.+.++|.|+++.++.-. ++
T Consensus 450 ~FaWEP~gdkF~vi~g~------------~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g 517 (698)
T KOG2314|consen 450 AFAWEPHGDKFAVISGN------------TVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRG 517 (698)
T ss_pred eeeeccCCCeEEEEEcc------------ccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEeccccc
Confidence 45677888544432111 11233445555543344333211 12578999999999999887754 66
Q ss_pred eEEEEEecCC---CCcceeeeeccCCCCCCeEEECCCCCEEEEEec
Q 016199 258 RCRKFYIKGK---NAGRVEKFIETLPGLPDNIRYDGEGHYLIALAT 300 (393)
Q Consensus 258 ri~~~~~~g~---~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~ 300 (393)
.+.-||.+-. ..+..+.+ ....+.-|+.|+|.++...
T Consensus 518 ~l~F~D~~~a~~k~~~~~eh~------~at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 518 DLEFYDTDYADLKDTASPEHF------AATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred ceEEEecchhhhhhccCcccc------ccccceECCCCCEEEEeee
Confidence 7777876420 01111111 2456888999998887654
No 360
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=61.46 E-value=32 Score=32.84 Aligned_cols=63 Identities=17% Similarity=0.088 Sum_probs=43.8
Q ss_pred cCceEEecCccCCCceEEEecCCCEEEEEe-cCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCC
Q 016199 72 QGSEKVGYGVLKGPEDLLYDAHSKLIYTGC-EDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSD 139 (393)
Q Consensus 72 ~~~~~l~~g~~~~Pe~ia~d~~g~~L~~~~-~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G 139 (393)
++-.++.+|+ .|-.++.++|||+.+...+ .+-+|-.+...+.. ...+........|++|.++|
T Consensus 82 ew~ckIdeg~-agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~----~~~~~~pK~~~kg~~f~~dg 145 (447)
T KOG4497|consen 82 EWYCKIDEGQ-AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK----GYLLPHPKTNVKGYAFHPDG 145 (447)
T ss_pred eeEEEeccCC-CcceeeeECCCcceEeeeecceeEEEEEEeccce----eEEecccccCceeEEECCCC
Confidence 3456677774 6666789999997665444 47788888887754 33333334456899999999
No 361
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.32 E-value=1.4e+02 Score=27.59 Aligned_cols=196 Identities=12% Similarity=0.138 Sum_probs=93.3
Q ss_pred CCCce-EEEec--CCCEEEEEecCCeEEEEEcCCCCCcceeee---eecCCCceeeeEECCCCCCCCceEEEEEeCCCc-
Q 016199 83 KGPED-LLYDA--HSKLIYTGCEDGWIKRVTLNDSPADSLVHN---WINTGGRPLGIAFANSDPDADRITMIVADAYKG- 155 (393)
Q Consensus 83 ~~Pe~-ia~d~--~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~---~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g- 155 (393)
.||-. +++.. -|.+|-..+.||+|+.++.+++. +.. +.......+.+++.+.++- .++.+....|
T Consensus 56 ~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~----w~k~~e~~~h~~SVNsV~wapheyg----l~LacasSDG~ 127 (299)
T KOG1332|consen 56 SGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGR----WTKAYEHAAHSASVNSVAWAPHEYG----LLLACASSDGK 127 (299)
T ss_pred CCCeeEEeecccccCcEeeEeecCceEEEEecCCCc----hhhhhhhhhhcccceeecccccccc----eEEEEeeCCCc
Confidence 55543 44443 57655555679999999877654 322 2223456778888775420 4555544444
Q ss_pred --eEEEeCCc---eEEEeeccCCccccccccEEEcCC---CcEEEEeCCCccchhhheehhcccC--CCcEEEEEeCCCC
Q 016199 156 --LLKISGNS---TVLLTDEAEGQKFKLTDGVDVADD---GMIYFTDASNKYYLREYILDIFEGK--PNGRLLSFDPVTK 225 (393)
Q Consensus 156 --l~~id~~g---~~~l~~~~~g~~~~~~~~l~~d~d---G~l~~td~~~~~~~~~~~~~~~e~~--~~g~l~~~d~~t~ 225 (393)
|+.++.+| .+.+... .+ -.+|.+...|. |.+.=.....+ ...+..+. ..-.|+++|.++-
T Consensus 128 vsvl~~~~~g~w~t~ki~~a---H~-~GvnsVswapa~~~g~~~~~~~~~~------~krlvSgGcDn~VkiW~~~~~~w 197 (299)
T KOG1332|consen 128 VSVLTYDSSGGWTTSKIVFA---HE-IGVNSVSWAPASAPGSLVDQGPAAK------VKRLVSGGCDNLVKIWKFDSDSW 197 (299)
T ss_pred EEEEEEcCCCCccchhhhhc---cc-cccceeeecCcCCCccccccCcccc------cceeeccCCccceeeeecCCcch
Confidence 56666664 1111110 01 11334444432 32211000000 01111112 2345677765432
Q ss_pred eEEE-EecCccCCCcEEEcCCC---CEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCe---EEECCCCCEEEEE
Q 016199 226 ETKV-LVSDLYFANGVVLSPDQ---THLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDN---IRYDGEGHYLIAL 298 (393)
Q Consensus 226 ~~~~-~~~~l~~~ngi~~s~dg---~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~---i~~d~~G~lwva~ 298 (393)
+.+. +...-.+...++..|.- +.-+.+.+..+++..|..+.+.......+. ..+|+- +..+..|+++-..
T Consensus 198 ~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll---~~f~~~~w~vSWS~sGn~LaVs 274 (299)
T KOG1332|consen 198 KLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLL---EEFPDVVWRVSWSLSGNILAVS 274 (299)
T ss_pred hhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccccc---ccCCcceEEEEEeccccEEEEe
Confidence 3222 33334556667766653 345566666778888876533111111222 225553 4456678766544
Q ss_pred e
Q 016199 299 A 299 (393)
Q Consensus 299 ~ 299 (393)
.
T Consensus 275 ~ 275 (299)
T KOG1332|consen 275 G 275 (299)
T ss_pred c
Confidence 4
No 362
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=61.31 E-value=17 Score=22.56 Aligned_cols=16 Identities=31% Similarity=0.578 Sum_probs=11.5
Q ss_pred CCCcEEEEEeCCCCeE
Q 016199 212 KPNGRLLSFDPVTKET 227 (393)
Q Consensus 212 ~~~g~l~~~d~~t~~~ 227 (393)
+..|.|+.+|.+||+.
T Consensus 7 ~~~g~l~AlD~~TG~~ 22 (38)
T PF01011_consen 7 TPDGYLYALDAKTGKV 22 (38)
T ss_dssp TTTSEEEEEETTTTSE
T ss_pred CCCCEEEEEECCCCCE
Confidence 4567788888887764
No 363
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=61.08 E-value=89 Score=28.50 Aligned_cols=89 Identities=18% Similarity=0.221 Sum_probs=0.0
Q ss_pred CCceeeeEECC-CCCCCCceEEEEEeCCCceEEEeCCc-eEEEe--eccCCccccccccEEEcC-CCcEEEEeCCCccch
Q 016199 127 GGRPLGIAFAN-SDPDADRITMIVADAYKGLLKISGNS-TVLLT--DEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYYL 201 (393)
Q Consensus 127 ~~~p~gl~~d~-~G~~~~~~~L~v~~~~~gl~~id~~g-~~~l~--~~~~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~ 201 (393)
+.+..||.+-+ +| +||--...++||.+|+.. .-... ......-.....++++.| -.+|-+-
T Consensus 26 ge~l~GID~Rpa~G------~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvv-------- 91 (236)
T PF14339_consen 26 GESLVGIDFRPANG------QLYGLGSTGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLRVV-------- 91 (236)
T ss_pred CCeEEEEEeecCCC------CEEEEeCCCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEEEE--------
Q ss_pred hhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCc
Q 016199 202 REYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANG 239 (393)
Q Consensus 202 ~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ng 239 (393)
+.+|.=+|++++++.+...-..+.++.+
T Consensus 92 ----------s~~GqNlR~npdtGav~~~Dg~L~y~~g 119 (236)
T PF14339_consen 92 ----------SNTGQNLRLNPDTGAVTIVDGNLAYAAG 119 (236)
T ss_pred ----------ccCCcEEEECCCCCCceeccCccccCCC
No 364
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=60.60 E-value=1.2e+02 Score=30.58 Aligned_cols=142 Identities=12% Similarity=0.162 Sum_probs=72.6
Q ss_pred CCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCC------------CCCe---EEECCCCC--EEEEEe
Q 016199 237 ANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPG------------LPDN---IRYDGEGH--YLIALA 299 (393)
Q Consensus 237 ~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g------------~P~~---i~~d~~G~--lwva~~ 299 (393)
...+-++|||+.+|+-.. +.+..|.++... -+.+.+.+.-|| +..| +..++||- -|+-..
T Consensus 223 v~qllL~Pdg~~LYv~~g--~~~~v~~L~~r~-l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr 299 (733)
T COG4590 223 VSQLLLTPDGKTLYVRTG--SELVVALLDKRS-LQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVR 299 (733)
T ss_pred hHhhEECCCCCEEEEecC--CeEEEEeecccc-cchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeee
Confidence 456779999999999764 778888876432 222334433333 1122 34566764 343222
Q ss_pred cCcchhhhhhhcCcchhhhh-hh-hhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCC--------CCccEEEEEeCCEE
Q 016199 300 TEFSTYWDLAYRYPFIRKVS-GM-VVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPE--------MSLISSAIKIGDHL 369 (393)
Q Consensus 300 ~~r~~~~~~~~~~~~~r~~~-~~-~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~--------~~~~~~~~~~~g~L 369 (393)
.. ..|.+.++- .. .|.......+.....+.+.++++|+.-..+...+ +.....+.-....-
T Consensus 300 ~~---------~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~ 370 (733)
T COG4590 300 RD---------GQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQA 370 (733)
T ss_pred cC---------CCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccc
Confidence 11 123333221 11 1222222233344567888888887644333222 22223333333444
Q ss_pred EEEecCCCeEEEEeCCCCCCC
Q 016199 370 YCGSVHHRGILHLDVNQHPAR 390 (393)
Q Consensus 370 yigs~~~~~i~~~~~~~~~~~ 390 (393)
|+-+.+...|.++.+++.-|.
T Consensus 371 ~Ll~e~~gki~~~~l~Nr~Pe 391 (733)
T COG4590 371 YLLSEDQGKIRLAQLENRNPE 391 (733)
T ss_pred hheeecCCceEEEEecCCCCC
Confidence 455557778888887766553
No 365
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=60.54 E-value=2e+02 Score=29.41 Aligned_cols=132 Identities=12% Similarity=0.124 Sum_probs=71.2
Q ss_pred eEEEEEcCCCCCcceeeeee-cCCCceeeeEECCCCCCCCceEEEEEeCC--CceEEEeCCceEEEeeccCCcccccccc
Q 016199 105 WIKRVTLNDSPADSLVHNWI-NTGGRPLGIAFANSDPDADRITMIVADAY--KGLLKISGNSTVLLTDEAEGQKFKLTDG 181 (393)
Q Consensus 105 ~I~~~~~~~~~~~~~~~~~~-~~~~~p~gl~~d~~G~~~~~~~L~v~~~~--~gl~~id~~g~~~l~~~~~g~~~~~~~~ 181 (393)
.++.++.++.. ..+. ...+-.+++.+.++|. .+-|+-.+ ..+-.+|.++..+. +-.+|.. |.
T Consensus 252 ~Lyll~t~g~s-----~~V~L~k~GPVhdv~W~~s~~-----EF~VvyGfMPAkvtifnlr~~~v~-df~egpR----N~ 316 (566)
T KOG2315|consen 252 TLYLLATQGES-----VSVPLLKEGPVHDVTWSPSGR-----EFAVVYGFMPAKVTIFNLRGKPVF-DFPEGPR----NT 316 (566)
T ss_pred eEEEEEecCce-----EEEecCCCCCceEEEECCCCC-----EEEEEEecccceEEEEcCCCCEeE-eCCCCCc----cc
Confidence 46666666332 1121 1134458888988881 34444222 23667777772121 2223322 46
Q ss_pred EEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec-CccCCCcEEEcCCCCEEEEEeCC-----
Q 016199 182 VDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS-DLYFANGVVLSPDQTHLVYCETS----- 255 (393)
Q Consensus 182 l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~-~l~~~ngi~~s~dg~~l~v~~~~----- 255 (393)
+-+.|.|++.+-- +. +.-.|.+-.+|..+.+. +.. .-....-..++|||++++.+.|.
T Consensus 317 ~~fnp~g~ii~lA-GF-------------GNL~G~mEvwDv~n~K~--i~~~~a~~tt~~eW~PdGe~flTATTaPRlrv 380 (566)
T KOG2315|consen 317 AFFNPHGNIILLA-GF-------------GNLPGDMEVWDVPNRKL--IAKFKAANTTVFEWSPDGEYFLTATTAPRLRV 380 (566)
T ss_pred eEECCCCCEEEEe-ec-------------CCCCCceEEEeccchhh--ccccccCCceEEEEcCCCcEEEEEeccccEEe
Confidence 7788888755431 11 12346677888765322 111 11223457799999998888776
Q ss_pred CCeEEEEEecCC
Q 016199 256 MRRCRKFYIKGK 267 (393)
Q Consensus 256 ~~ri~~~~~~g~ 267 (393)
++++-.|+..|.
T Consensus 381 dNg~KiwhytG~ 392 (566)
T KOG2315|consen 381 DNGIKIWHYTGS 392 (566)
T ss_pred cCCeEEEEecCc
Confidence 345555666554
No 366
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.26 E-value=29 Score=38.17 Aligned_cols=151 Identities=13% Similarity=0.174 Sum_probs=85.3
Q ss_pred EEEecCCCEEEEE-ecCCeEEEEEcCCCCCcceeeeeecCCC--ceeeeEECCCCCCCCceEEEEEeCCCc---eEEEeC
Q 016199 88 LLYDAHSKLIYTG-CEDGWIKRVTLNDSPADSLVHNWINTGG--RPLGIAFANSDPDADRITMIVADAYKG---LLKISG 161 (393)
Q Consensus 88 ia~d~~g~~L~~~-~~~g~I~~~~~~~~~~~~~~~~~~~~~~--~p~gl~~d~~G~~~~~~~L~v~~~~~g---l~~id~ 161 (393)
++|...-.+++.+ +.+|+...||.+.+. .+..+....+ ...++.+++++.- .|+++....+ |...|.
T Consensus 167 lsWNrkvqhILAS~s~sg~~~iWDlr~~~---pii~ls~~~~~~~~S~l~WhP~~aT----ql~~As~dd~~PviqlWDl 239 (1049)
T KOG0307|consen 167 LSWNRKVSHILASGSPSGRAVIWDLRKKK---PIIKLSDTPGRMHCSVLAWHPDHAT----QLLVASGDDSAPVIQLWDL 239 (1049)
T ss_pred eccchhhhHHhhccCCCCCceeccccCCC---cccccccCCCccceeeeeeCCCCce----eeeeecCCCCCceeEeecc
Confidence 3443333334443 346788888877542 1223322222 3568999987621 5788865554 444453
Q ss_pred Cc----eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEE-EecCcc
Q 016199 162 NS----TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKV-LVSDLY 235 (393)
Q Consensus 162 ~g----~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~-~~~~l~ 235 (393)
.- .+++ ++.. +.+-++.+-+.+ ++.++. ...++++++++.|+++-- +.....
T Consensus 240 R~assP~k~~----~~H~-~GilslsWc~~D~~lllSs-----------------gkD~~ii~wN~~tgEvl~~~p~~~n 297 (1049)
T KOG0307|consen 240 RFASSPLKIL----EGHQ-RGILSLSWCPQDPRLLLSS-----------------GKDNRIICWNPNTGEVLGELPAQGN 297 (1049)
T ss_pred cccCCchhhh----cccc-cceeeeccCCCCchhhhcc-----------------cCCCCeeEecCCCceEeeecCCCCc
Confidence 21 2222 1211 223355555544 676764 456799999999876532 222223
Q ss_pred CCCcEEEcCCCCEEEEEeCCCCeEEEEEecCC
Q 016199 236 FANGVVLSPDQTHLVYCETSMRRCRKFYIKGK 267 (393)
Q Consensus 236 ~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~ 267 (393)
.--.+.+.|..-.++-+.+..++|..|.+.+.
T Consensus 298 W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 298 WCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred ceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 34456777776667677777899999998753
No 367
>PLN02193 nitrile-specifier protein
Probab=59.56 E-value=2e+02 Score=29.05 Aligned_cols=51 Identities=16% Similarity=0.082 Sum_probs=29.2
Q ss_pred EEEEEeCCCCeEEEEecC--ccCC--CcEEEcCCCCEEEEEeCC-----CCeEEEEEecC
Q 016199 216 RLLSFDPVTKETKVLVSD--LYFA--NGVVLSPDQTHLVYCETS-----MRRCRKFYIKG 266 (393)
Q Consensus 216 ~l~~~d~~t~~~~~~~~~--l~~~--ngi~~s~dg~~l~v~~~~-----~~ri~~~~~~g 266 (393)
.+++||+.+.+.+.+... ...+ .+.+...-++.||+..-. .+.+++||+..
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t 253 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTT 253 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCC
Confidence 599999998887754321 2111 233322223467776432 24688999854
No 368
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=58.99 E-value=1.2e+02 Score=31.25 Aligned_cols=108 Identities=16% Similarity=0.200 Sum_probs=67.0
Q ss_pred cccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEE--EcC-CCCEEEEEe
Q 016199 177 KLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVV--LSP-DQTHLVYCE 253 (393)
Q Consensus 177 ~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~--~s~-dg~~l~v~~ 253 (393)
..+|.+....+|.+.++- +..-++..+|+-..+.....+..+..|-++ |-| -++.++++.
T Consensus 51 GCVN~LeWn~dG~lL~SG-----------------SDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sg 113 (758)
T KOG1310|consen 51 GCVNCLEWNADGELLASG-----------------SDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSG 113 (758)
T ss_pred ceecceeecCCCCEEeec-----------------CCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEec
Confidence 467899999999887762 344589999998666655555445555443 333 345788999
Q ss_pred CCCCeEEEEEecCCCCcceeeeecc-------CCCCCCeEEECCCC--CEEEEEecC
Q 016199 254 TSMRRCRKFYIKGKNAGRVEKFIET-------LPGLPDNIRYDGEG--HYLIALATE 301 (393)
Q Consensus 254 ~~~~ri~~~~~~g~~~~~~~~~~~~-------l~g~P~~i~~d~~G--~lwva~~~~ 301 (393)
.+...|..|+++..+.+....-+.. .......|+..++| .+|.+.-.+
T Consensus 114 AgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDG 170 (758)
T KOG1310|consen 114 AGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDG 170 (758)
T ss_pred cCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCc
Confidence 9999999999974322211110100 00123457776666 488887654
No 369
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=57.66 E-value=2.2e+02 Score=28.75 Aligned_cols=146 Identities=12% Similarity=0.091 Sum_probs=65.9
Q ss_pred EEecCccCCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCc
Q 016199 76 KVGYGVLKGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKG 155 (393)
Q Consensus 76 ~l~~g~~~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g 155 (393)
.++... ..|..+.++|+|+.+.+ ..+|.-..+...... -..+ +.....++...| ++-+-+....
T Consensus 27 ~lg~~~-~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r----~k~~----G~g~~~vw~~~n------~yAv~~~~~~ 90 (443)
T PF04053_consen 27 ELGSCE-IYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWR----NKAF----GSGLSFVWSSRN------RYAVLESSST 90 (443)
T ss_dssp EEEE-S-S--SEEEE-TTSSEEEE-EETTEEEEEETTTTE----EEEE----EE-SEEEE-TSS------EEEEE-TTS-
T ss_pred cCCCCC-cCCeeEEECCCCCEEEE-EcCCEEEEEEccCCc----cccc----CceeEEEEecCc------cEEEEECCCe
Confidence 344433 56999999999996665 456655555532211 1111 233455666666 6655554333
Q ss_pred eEEE-eCCc-e-EEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEec
Q 016199 156 LLKI-SGNS-T-VLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVS 232 (393)
Q Consensus 156 l~~i-d~~g-~-~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~ 232 (393)
|..+ +.+. . ..+.. + ..+.+|-- |.++... ..+.|..||-.+++...-.+
T Consensus 91 I~I~kn~~~~~~k~i~~-----~-~~~~~If~---G~LL~~~------------------~~~~i~~yDw~~~~~i~~i~ 143 (443)
T PF04053_consen 91 IKIYKNFKNEVVKSIKL-----P-FSVEKIFG---GNLLGVK------------------SSDFICFYDWETGKLIRRID 143 (443)
T ss_dssp EEEEETTEE-TT----------S-S-EEEEE----SSSEEEE------------------ETTEEEEE-TTT--EEEEES
T ss_pred EEEEEcCccccceEEcC-----C-cccceEEc---CcEEEEE------------------CCCCEEEEEhhHcceeeEEe
Confidence 4433 2111 0 11100 0 01233322 6554442 23359999988776543332
Q ss_pred CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199 233 DLYFANGVVLSPDQTHLVYCETSMRRCRKFYIK 265 (393)
Q Consensus 233 ~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~ 265 (393)
......|.++++|+.+-+.....--|++|+.+
T Consensus 144 -v~~vk~V~Ws~~g~~val~t~~~i~il~~~~~ 175 (443)
T PF04053_consen 144 -VSAVKYVIWSDDGELVALVTKDSIYILKYNLE 175 (443)
T ss_dssp -S-E-EEEEE-TTSSEEEEE-S-SEEEEEE-HH
T ss_pred -cCCCcEEEEECCCCEEEEEeCCeEEEEEecch
Confidence 12136889999998877775555556666654
No 370
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=57.52 E-value=1.7e+02 Score=27.64 Aligned_cols=94 Identities=11% Similarity=0.100 Sum_probs=57.7
Q ss_pred CCCcEEEEEeCCCCeEEEEecC-ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeecc------------
Q 016199 212 KPNGRLLSFDPVTKETKVLVSD-LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIET------------ 278 (393)
Q Consensus 212 ~~~g~l~~~d~~t~~~~~~~~~-l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~------------ 278 (393)
+..-.|.-.|.++|..+..+.+ -...-.+.++|..++++.+.+..++|..||+..- .+-...+ |+
T Consensus 165 tr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRra-sgcf~~l-D~hn~k~~p~~~~n 242 (397)
T KOG4283|consen 165 TRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRA-SGCFRVL-DQHNTKRPPILKTN 242 (397)
T ss_pred cCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecc-cceeEEe-ecccCccCcccccc
Confidence 3344567778888887766554 2334557788999999999999999998888521 1222211 11
Q ss_pred --CCCCCCeEEECCCCC-EEEEEecCcchhhh
Q 016199 279 --LPGLPDNIRYDGEGH-YLIALATEFSTYWD 307 (393)
Q Consensus 279 --l~g~P~~i~~d~~G~-lwva~~~~r~~~~~ 307 (393)
..|--+|++..++|+ +|......|...|.
T Consensus 243 ~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn 274 (397)
T KOG4283|consen 243 TAHYGKVNGLAWTSDARYLASCGTDDRIRVWN 274 (397)
T ss_pred ccccceeeeeeecccchhhhhccCccceEEee
Confidence 112236788888886 55544445544443
No 371
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=57.29 E-value=1.7e+02 Score=30.86 Aligned_cols=94 Identities=15% Similarity=0.135 Sum_probs=53.7
Q ss_pred CCCCCCCCCccccCcccccccCceEEecCccCCCceEEEecCCCEEEEEecC-----CeEEEEEcCCCCCcceeeeeecC
Q 016199 52 PVHEFTHPPLTAALRNERMLQGSEKVGYGVLKGPEDLLYDAHSKLIYTGCED-----GWIKRVTLNDSPADSLVHNWINT 126 (393)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~g~~~~Pe~ia~d~~g~~L~~~~~~-----g~I~~~~~~~~~~~~~~~~~~~~ 126 (393)
.|..++.||.+..+..+....+.+++-.-. .--.+++++++|+.+-.+... ..|..|+...-. ++..+...
T Consensus 496 ~p~~L~ePP~EdqLq~~tLwPEv~KLYGHG-yEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~---~~~~L~~H 571 (764)
T KOG1063|consen 496 APCELTEPPTEDQLQQNTLWPEVHKLYGHG-YEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWL---QVQELEGH 571 (764)
T ss_pred CchhccCCChHHHHHHhccchhhHHhccCc-eeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchh---hhheeccc
Confidence 344566677777777777777777764322 445678999999844433321 235555543211 01212111
Q ss_pred CCceeeeEECCCCCCCCceEEEEEeCCCc
Q 016199 127 GGRPLGIAFANSDPDADRITMIVADAYKG 155 (393)
Q Consensus 127 ~~~p~gl~~d~~G~~~~~~~L~v~~~~~g 155 (393)
.-...-|+|.+|| +++++.....
T Consensus 572 sLTVT~l~FSpdg------~~LLsvsRDR 594 (764)
T KOG1063|consen 572 SLTVTRLAFSPDG------RYLLSVSRDR 594 (764)
T ss_pred ceEEEEEEECCCC------cEEEEeecCc
Confidence 2235678999999 7777655544
No 372
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=54.65 E-value=1.7e+02 Score=31.31 Aligned_cols=146 Identities=15% Similarity=0.165 Sum_probs=77.2
Q ss_pred CEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEE-EeCCc---eEEEeec
Q 016199 95 KLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLK-ISGNS---TVLLTDE 170 (393)
Q Consensus 95 ~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~-id~~g---~~~l~~~ 170 (393)
+.|.+.+.+|-|..||+......++...|-...-..+.+.|...-+ ++++.....|.++ +|... .....
T Consensus 101 NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep-----~iliSGSQDg~vK~~DlR~~~S~~t~~-- 173 (839)
T KOG0269|consen 101 NLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEP-----NILISGSQDGTVKCWDLRSKKSKSTFR-- 173 (839)
T ss_pred hhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCc-----cEEEecCCCceEEEEeeeccccccccc--
Confidence 4566777789999999875210111223322333467788876443 6777766677544 46432 11111
Q ss_pred cCCccccccccEEEcC-CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCe-EE-EEecCccCCCcEEEcCCCC
Q 016199 171 AEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKE-TK-VLVSDLYFANGVVLSPDQT 247 (393)
Q Consensus 171 ~~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~-~~-~~~~~l~~~ngi~~s~dg~ 247 (393)
+ .-..+.+|.+.| .++.+++- ..+|-|..+|...-. .. .+.......-.+.++|++.
T Consensus 174 --~-nSESiRDV~fsp~~~~~F~s~-----------------~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~ 233 (839)
T KOG0269|consen 174 --S-NSESIRDVKFSPGYGNKFASI-----------------HDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNRE 233 (839)
T ss_pred --c-cchhhhceeeccCCCceEEEe-----------------cCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCc
Confidence 1 123466888887 45666663 345678888864211 11 1122233445566788653
Q ss_pred EEEEEeCCCC-eEEEEEecCCCC
Q 016199 248 HLVYCETSMR-RCRKFYIKGKNA 269 (393)
Q Consensus 248 ~l~v~~~~~~-ri~~~~~~g~~~ 269 (393)
|++..++. .+..|+..+.+.
T Consensus 234 --~lATGGRDK~vkiWd~t~~~~ 254 (839)
T KOG0269|consen 234 --WLATGGRDKMVKIWDMTDSRA 254 (839)
T ss_pred --eeeecCCCccEEEEeccCCCc
Confidence 33333344 455555554443
No 373
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=54.29 E-value=18 Score=36.04 Aligned_cols=23 Identities=30% Similarity=0.652 Sum_probs=19.3
Q ss_pred ccccccccEEEcCCCcEEEEeCC
Q 016199 174 QKFKLTDGVDVADDGMIYFTDAS 196 (393)
Q Consensus 174 ~~~~~~~~l~~d~dG~l~~td~~ 196 (393)
..+..++++.+|+||..|++|..
T Consensus 464 ~~fylphgl~~dkdgf~~~tdva 486 (501)
T KOG3567|consen 464 NLFYLPHGLSIDKDGFYWVTDVA 486 (501)
T ss_pred CceecCCcceecCCCcEEeeccc
Confidence 34677999999999999999843
No 374
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=53.76 E-value=2.7e+02 Score=28.73 Aligned_cols=226 Identities=12% Similarity=0.084 Sum_probs=114.9
Q ss_pred CCceeeeEECCCCCCCCceEEEEEeC-CCceEEEeCCc---eEEEeeccCCccccccccEEEcC--CCcEEEEeCCCccc
Q 016199 127 GGRPLGIAFANSDPDADRITMIVADA-YKGLLKISGNS---TVLLTDEAEGQKFKLTDGVDVAD--DGMIYFTDASNKYY 200 (393)
Q Consensus 127 ~~~p~gl~~d~~G~~~~~~~L~v~~~-~~gl~~id~~g---~~~l~~~~~g~~~~~~~~l~~d~--dG~l~~td~~~~~~ 200 (393)
.|..+.+....+| .+++... +..+..+|+-. ...+.+ |. ...+..+.+-| .+++.++-+
T Consensus 50 ~GCVN~LeWn~dG------~lL~SGSDD~r~ivWd~~~~KllhsI~T---gH-taNIFsvKFvP~tnnriv~sgA----- 114 (758)
T KOG1310|consen 50 TGCVNCLEWNADG------ELLASGSDDTRLIVWDPFEYKLLHSIST---GH-TANIFSVKFVPYTNNRIVLSGA----- 114 (758)
T ss_pred cceecceeecCCC------CEEeecCCcceEEeecchhcceeeeeec---cc-ccceeEEeeeccCCCeEEEecc-----
Confidence 4668899999999 7776644 45677778643 222221 11 12344555555 346766643
Q ss_pred hhhheehhcccCCCcEEEEEeCCCCe--------EE---EEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCC
Q 016199 201 LREYILDIFEGKPNGRLLSFDPVTKE--------TK---VLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNA 269 (393)
Q Consensus 201 ~~~~~~~~~e~~~~g~l~~~d~~t~~--------~~---~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~ 269 (393)
+..-|..||....+ .+ .........--|+..|++-..+|+.+..+.|..||+..+..
T Consensus 115 ------------gDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~ 182 (758)
T KOG1310|consen 115 ------------GDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHV 182 (758)
T ss_pred ------------CcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCcc
Confidence 23345666654211 01 01112334455777788867788888899999999864311
Q ss_pred cce-e----eeeccCCCC--CCeEEECCCCCEEEEEecCcchhhhhhhcCcchh-----hhhhhhhhhhC-CCCCCCCCc
Q 016199 270 GRV-E----KFIETLPGL--PDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIR-----KVSGMVVRYLG-MPPMGKSSS 336 (393)
Q Consensus 270 ~~~-~----~~~~~l~g~--P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r-----~~~~~~~~~~~-~~~~~~~~~ 336 (393)
-.. + .+..-.+.+ -..+.+++....|.+..+. .||.| +++.-++.... ..+++...+
T Consensus 183 c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgs----------dpfarLYD~Rr~lks~~s~~~~~~~pp~~~~ 252 (758)
T KOG1310|consen 183 CNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGS----------DPFARLYDRRRVLKSFRSDGTMNTCPPKDCR 252 (758)
T ss_pred CCccccccHHHHHhchhhheeeeeeecCCCCceEEecCC----------CchhhhhhhhhhccCCCCCccccCCCCcccc
Confidence 110 1 011001111 1346677777777665432 23333 33322222221 234455556
Q ss_pred eEEEECCCCcEEEEe-eCCCCCccEEEEEe-CCEEEEEecCCCeEEEEeCCCCCC
Q 016199 337 GVFIVDLDGKPIAHY-YDPEMSLISSAIKI-GDHLYCGSVHHRGILHLDVNQHPA 389 (393)
Q Consensus 337 ~v~~~d~~g~~~~~~-~d~~~~~~~~~~~~-~g~Lyigs~~~~~i~~~~~~~~~~ 389 (393)
+|..|.+.+-..... .+.....++.+.-. +|.=.+-++++.+++.+++...+.
T Consensus 253 cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 253 CVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKS 307 (758)
T ss_pred hhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCC
Confidence 677776644311111 01112233443332 354445567788888888766543
No 375
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=53.65 E-value=3.7e+02 Score=30.65 Aligned_cols=51 Identities=16% Similarity=0.177 Sum_probs=31.9
Q ss_pred CcEEEEEeCCCCe-EEEEecC--ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199 214 NGRLLSFDPVTKE-TKVLVSD--LYFANGVVLSPDQTHLVYCETSMRRCRKFYIK 265 (393)
Q Consensus 214 ~g~l~~~d~~t~~-~~~~~~~--l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~ 265 (393)
.+++..+|+.... ...+... -.....++++|-+. .++.++.+|.+..||+.
T Consensus 1172 ~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~-WlviGts~G~l~lWDLR 1225 (1431)
T KOG1240|consen 1172 LSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCN-WLVIGTSRGQLVLWDLR 1225 (1431)
T ss_pred ccceEEecchhhhhHHhhhcCccccceeEEEecCCce-EEEEecCCceEEEEEee
Confidence 3567777764321 1111111 23456788999886 56778889999999984
No 376
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=53.50 E-value=41 Score=20.20 Aligned_cols=32 Identities=22% Similarity=0.159 Sum_probs=21.8
Q ss_pred ecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEE
Q 016199 231 VSDLYFANGVVLSPDQTHLVYCETSMRRCRKFY 263 (393)
Q Consensus 231 ~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~ 263 (393)
.......+.++++|+++.+ ++...++.|..|+
T Consensus 8 ~~h~~~i~~i~~~~~~~~~-~s~~~D~~i~vwd 39 (39)
T PF00400_consen 8 RGHSSSINSIAWSPDGNFL-ASGSSDGTIRVWD 39 (39)
T ss_dssp ESSSSSEEEEEEETTSSEE-EEEETTSEEEEEE
T ss_pred cCCCCcEEEEEEecccccc-eeeCCCCEEEEEC
Confidence 3344567889999998655 5555677777764
No 377
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=52.90 E-value=1.9e+02 Score=27.78 Aligned_cols=59 Identities=17% Similarity=0.194 Sum_probs=34.4
Q ss_pred ccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCC
Q 016199 180 DGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETS 255 (393)
Q Consensus 180 ~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~ 255 (393)
..+..+||| .|..+. . -.-+|-.+...|.+...+...-....|+++.+||++.-++++-
T Consensus 95 s~~~WSPdgrhiL~ts-e----------------F~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRr 154 (447)
T KOG4497|consen 95 SSISWSPDGRHILLTS-E----------------FDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRR 154 (447)
T ss_pred eeeeECCCcceEeeee-c----------------ceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecc
Confidence 356788999 455553 1 1234444444444443333222334799999999987776653
No 378
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=52.53 E-value=3.7e+02 Score=29.97 Aligned_cols=167 Identities=10% Similarity=0.075 Sum_probs=86.8
Q ss_pred eEEEecCCCEEEEEec----CCeEEEEEcCCCCCcceeeeee----cCCCceeeeEECCCCCCCCceEEEEEeCCCceEE
Q 016199 87 DLLYDAHSKLIYTGCE----DGWIKRVTLNDSPADSLVHNWI----NTGGRPLGIAFANSDPDADRITMIVADAYKGLLK 158 (393)
Q Consensus 87 ~ia~d~~g~~L~~~~~----~g~I~~~~~~~~~~~~~~~~~~----~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~ 158 (393)
.++|-|.|+ +.+++. ...|..|..+|.. ...|. ........|.+..++ .++..-....|..
T Consensus 261 ~l~WrPsG~-lIA~~q~~~~~~~VvFfErNGLr----hgeF~l~~~~~~~~v~~l~Wn~ds------~iLAv~~~~~vqL 329 (928)
T PF04762_consen 261 ALSWRPSGN-LIASSQRLPDRHDVVFFERNGLR----HGEFTLRFDPEEEKVIELAWNSDS------EILAVWLEDRVQL 329 (928)
T ss_pred CccCCCCCC-EEEEEEEcCCCcEEEEEecCCcE----eeeEecCCCCCCceeeEEEECCCC------CEEEEEecCCceE
Confidence 388999998 444443 2357777776643 22221 112346788888888 6554433445655
Q ss_pred EeCCc-eEEEeeccCCccccccccEEEcCCC--cEEEEeCCCccchhhheehhcccC-----CCcEEEEEeCCCCeEEEE
Q 016199 159 ISGNS-TVLLTDEAEGQKFKLTDGVDVADDG--MIYFTDASNKYYLREYILDIFEGK-----PNGRLLSFDPVTKETKVL 230 (393)
Q Consensus 159 id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG--~l~~td~~~~~~~~~~~~~~~e~~-----~~g~l~~~d~~t~~~~~~ 230 (393)
+.... .-.+..+..-........+.+|+.. ++.+...+..+..-+|.+.+.-+. ..|.+...|-.+=.++.+
T Consensus 330 Wt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf 409 (928)
T PF04762_consen 330 WTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPF 409 (928)
T ss_pred EEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecc
Confidence 55433 1112111110000111236777743 566666544444445555444322 245677787543333333
Q ss_pred ecC-------------ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199 231 VSD-------------LYFANGVVLSPDQTHLVYCETSMRRCRKFYIK 265 (393)
Q Consensus 231 ~~~-------------l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~ 265 (393)
... -..++.+++++++..+.+. +.++.|..|...
T Consensus 410 ~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl-~~d~~l~~~~~~ 456 (928)
T PF04762_consen 410 RRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVL-TSDGSLSIYEWD 456 (928)
T ss_pred cccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEE-ECCCCEEEEEec
Confidence 211 1235788999888654333 346667777754
No 379
>PF13970 DUF4221: Domain of unknown function (DUF4221); PDB: 3S9J_A.
Probab=51.78 E-value=1.4e+02 Score=28.54 Aligned_cols=52 Identities=15% Similarity=0.209 Sum_probs=26.5
Q ss_pred ceEEEECCCCcEEEEeeCCC---------CC--ccEEEEEeCCEEEEEec-----------CCCeEEEEeCCCC
Q 016199 336 SGVFIVDLDGKPIAHYYDPE---------MS--LISSAIKIGDHLYCGSV-----------HHRGILHLDVNQH 387 (393)
Q Consensus 336 ~~v~~~d~~g~~~~~~~d~~---------~~--~~~~~~~~~g~Lyigs~-----------~~~~i~~~~~~~~ 387 (393)
..+..+|.+|+++..+.-.. .. ....+...++.+|++.. ....++.+|+.+-
T Consensus 115 ~~l~~~n~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~ 188 (333)
T PF13970_consen 115 PKLFLFNSQGEVLKKIDLEEEDLEFEPSEFPSFSNSPIFIKDNKLYFSQPYHYPFNGDFIEKIPVLAIIDLNTK 188 (333)
T ss_dssp TEEEEE-TT--EEEEEE---TTS-------BTTTTB--EEETTEEEEE---SSS--GGGGGGSEEEEEEETTT-
T ss_pred ceEEEEcCCCeEEEEEecccCcccccccccccccccceEeCCCeEEEeeecccccccccccCceEEEEEECCCC
Confidence 46999999999998876321 11 12344556777888765 1235667777553
No 380
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=51.61 E-value=2.5e+02 Score=27.69 Aligned_cols=53 Identities=9% Similarity=0.115 Sum_probs=36.8
Q ss_pred CCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199 212 KPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIK 265 (393)
Q Consensus 212 ~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~ 265 (393)
.+...+..+|-.||+.-.-.+.-.....+.++.|| .++++.+...+|..++..
T Consensus 151 g~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr 203 (472)
T KOG0303|consen 151 GSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPR 203 (472)
T ss_pred cCCceEEEEeccCCceeeecCCCCeEEEEEeccCC-ceeeeecccceeEEEcCC
Confidence 34557888998888754444322234567888999 466777778889998874
No 381
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=51.53 E-value=39 Score=36.51 Aligned_cols=64 Identities=19% Similarity=0.132 Sum_probs=45.0
Q ss_pred eEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEe
Q 016199 87 DLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKIS 160 (393)
Q Consensus 87 ~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id 160 (393)
++|-+.+|. |-+|+.+|.|..|+.-+.. +...+...+....+|.+..|| +..+|+...=|+.++
T Consensus 582 ~~aTt~~G~-iavgs~~G~IRLyd~~g~~---AKT~lp~lG~pI~~iDvt~DG------kwilaTc~tyLlLi~ 645 (794)
T PF08553_consen 582 CFATTEDGY-IAVGSNKGDIRLYDRLGKR---AKTALPGLGDPIIGIDVTADG------KWILATCKTYLLLID 645 (794)
T ss_pred EEEecCCce-EEEEeCCCcEEeecccchh---hhhcCCCCCCCeeEEEecCCC------cEEEEeecceEEEEE
Confidence 466677774 8899999999988855433 122333334445899999999 888887766666665
No 382
>PRK10115 protease 2; Provisional
Probab=51.11 E-value=3.4e+02 Score=29.07 Aligned_cols=155 Identities=15% Similarity=0.121 Sum_probs=0.0
Q ss_pred cccEEEcCCC--cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCe--EEEEecCccCCCcEEEcCCCCEEEEEeC
Q 016199 179 TDGVDVADDG--MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKE--TKVLVSDLYFANGVVLSPDQTHLVYCET 254 (393)
Q Consensus 179 ~~~l~~d~dG--~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~--~~~~~~~l~~~ngi~~s~dg~~l~v~~~ 254 (393)
..++.+++|| -.|..| ..+...-.|+.+|..+++ ...+...- ..+++++|++.+|++..
T Consensus 129 l~~~~~Spdg~~la~~~d--------------~~G~E~~~l~v~d~~tg~~l~~~i~~~~---~~~~w~~D~~~~~y~~~ 191 (686)
T PRK10115 129 LGGMAITPDNTIMALAED--------------FLSRRQYGIRFRNLETGNWYPELLDNVE---PSFVWANDSWTFYYVRK 191 (686)
T ss_pred EeEEEECCCCCEEEEEec--------------CCCcEEEEEEEEECCCCCCCCccccCcc---eEEEEeeCCCEEEEEEe
Q ss_pred CCC-----eEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCC
Q 016199 255 SMR-----RCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMP 329 (393)
Q Consensus 255 ~~~-----ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~ 329 (393)
... .|+++++.........++.+....+--.+....+|++.+........
T Consensus 192 ~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~------------------------- 246 (686)
T PRK10115 192 HPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATT------------------------- 246 (686)
T ss_pred cCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCcc-------------------------
Q ss_pred CCCCCCceEEEEC---CCCcEEEEeeCCCCCccEEEEEeCCEEEEEecCCCeEEEE
Q 016199 330 PMGKSSSGVFIVD---LDGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHL 382 (393)
Q Consensus 330 ~~~~~~~~v~~~d---~~g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~~~ 382 (393)
+.+..++ ++++ ...+..........+...++.+|+-+..+..-.++
T Consensus 247 ------~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ly~~tn~~~~~~~l 295 (686)
T PRK10115 247 ------SEVLLLDAELADAE-PFVFLPRRKDHEYSLDHYQHRFYLRSNRHGKNFGL 295 (686)
T ss_pred ------ccEEEEECcCCCCC-ceEEEECCCCCEEEEEeCCCEEEEEEcCCCCCceE
No 383
>TIGR03803 Gloeo_Verruco Gloeo_Verruco repeat. This model describes a rare protein repeat, found so far in two species of Verrucomicrobia (Chthoniobacter flavus and Verrucomicrobium spinosum) and in four different proteins of Gloeobacter violaceus PCC7421. In the Verrucomicrobial species, the repeat region is followed by a PEP-CTERM protein-sorting signal, suggesting an extracellular location.
Probab=50.67 E-value=54 Score=20.11 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=20.2
Q ss_pred CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEE
Q 016199 187 DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVL 230 (393)
Q Consensus 187 dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~ 230 (393)
||++|.+...-. ....|.|+++++.++. +.+
T Consensus 1 dg~lYGTT~~GG------------~~~~GTvf~~~~~g~~-t~L 31 (34)
T TIGR03803 1 GGTLYGTTSGGG------------ASGFGTLYRLSTAGGT-TVL 31 (34)
T ss_pred CCcEEEEcccCC------------CCCceeEEEEcCCCCe-EEE
Confidence 578888864221 1356889999997554 443
No 384
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=50.37 E-value=2.5e+02 Score=27.32 Aligned_cols=17 Identities=35% Similarity=0.427 Sum_probs=13.9
Q ss_pred cEEEEEeCCCCeEEEEe
Q 016199 215 GRLLSFDPVTKETKVLV 231 (393)
Q Consensus 215 g~l~~~d~~t~~~~~~~ 231 (393)
..+++||+.+++.+.+.
T Consensus 189 ~~v~~YD~~t~~W~~~~ 205 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAG 205 (376)
T ss_pred ceEEEEECCCCeeeECC
Confidence 46999999998887653
No 385
>COG4222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.76 E-value=2.7e+02 Score=27.53 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=19.1
Q ss_pred cCccCCCceEEEecCCCEEEEEecCCe
Q 016199 79 YGVLKGPEDLLYDAHSKLIYTGCEDGW 105 (393)
Q Consensus 79 ~g~~~~Pe~ia~d~~g~~L~~~~~~g~ 105 (393)
..+++|=.++.++++++..|+-+.+|+
T Consensus 65 ~~p~~G~Sgi~~d~~~~~f~~lSDng~ 91 (391)
T COG4222 65 GQPVGGFSGITYDPQGDGYWALSDNGR 91 (391)
T ss_pred CCCCCceeeeEEccCCCeEEEEeCCCc
Confidence 345666677999999986776666654
No 386
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=49.56 E-value=3.1e+02 Score=28.24 Aligned_cols=54 Identities=20% Similarity=0.271 Sum_probs=41.8
Q ss_pred CCCceEEEECCCCcEEEEeeCCC-CCccEEEEEeCCEEEEEecCC-CeEEEEeCCC
Q 016199 333 KSSSGVFIVDLDGKPIAHYYDPE-MSLISSAIKIGDHLYCGSVHH-RGILHLDVNQ 386 (393)
Q Consensus 333 ~~~~~v~~~d~~g~~~~~~~d~~-~~~~~~~~~~~g~Lyigs~~~-~~i~~~~~~~ 386 (393)
...+.|+.+|.+-+++..+.+-. -..+.++.-.+++.|+-.+.. +-+..+||.+
T Consensus 301 ~s~N~lyVLD~~L~~vG~l~~la~gE~IysvRF~Gd~~Y~VTFrqvDPLfviDLsd 356 (521)
T PF09826_consen 301 TSSNNLYVLDEDLKIVGSLEGLAPGERIYSVRFMGDRAYLVTFRQVDPLFVIDLSD 356 (521)
T ss_pred CceEEEEEECCCCcEeEEccccCCCceEEEEEEeCCeEEEEEEeecCceEEEECCC
Confidence 34577999998888888887533 445667777889999998875 8889999855
No 387
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=49.01 E-value=2.2e+02 Score=26.40 Aligned_cols=64 Identities=25% Similarity=0.375 Sum_probs=34.0
Q ss_pred CcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeecc---CCCCCC-----eEEECCCCC-EEEEEecCcc
Q 016199 238 NGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIET---LPGLPD-----NIRYDGEGH-YLIALATEFS 303 (393)
Q Consensus 238 ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~---l~g~P~-----~i~~d~~G~-lwva~~~~r~ 303 (393)
.|+..+..-.+||+++. .-.||+|.-+.. .+.....++. ++-+-+ .|...++|. +.++...+++
T Consensus 208 EG~VaDdEtG~LYIaeE-dvaiWK~~Aep~-~G~~g~~idr~~d~~~LtdDvEGltiYy~pnGkGYL~aSSQGnN 280 (364)
T COG4247 208 EGMVADDETGFLYIAEE-DVAIWKYEAEPN-RGNTGRLIDRIKDLSYLTDDVEGLTIYYGPNGKGYLLASSQGNN 280 (364)
T ss_pred cceeeccccceEEEeec-cceeeecccCCC-CCCccchhhhhcCchhhcccccccEEEEcCCCcEEEEEecCCCc
Confidence 45555544448999986 568999986532 2222222222 121111 355667766 5666655543
No 388
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=47.03 E-value=78 Score=31.15 Aligned_cols=31 Identities=16% Similarity=0.199 Sum_probs=26.6
Q ss_pred CCcEEEcCCCCEEEEEeCCCCeEEEEEecCC
Q 016199 237 ANGVVLSPDQTHLVYCETSMRRCRKFYIKGK 267 (393)
Q Consensus 237 ~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~ 267 (393)
...+-+|=|.|+|||+....+-|++||++.+
T Consensus 314 ITDilISmDDRFLYvs~WLHGDirQYdIsDP 344 (476)
T KOG0918|consen 314 ITDILISLDDRFLYVSNWLHGDIRQYDISDP 344 (476)
T ss_pred hheeEEeecCcEEEEEeeeecceeeeccCCC
Confidence 3567788899999999999999999998754
No 389
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.96 E-value=2.4e+02 Score=26.07 Aligned_cols=114 Identities=18% Similarity=0.210 Sum_probs=57.8
Q ss_pred EEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECC--CCCCCCceEEEEEeCCCc-eEEEeC-Cc-
Q 016199 89 LYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFAN--SDPDADRITMIVADAYKG-LLKISG-NS- 163 (393)
Q Consensus 89 a~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~--~G~~~~~~~L~v~~~~~g-l~~id~-~g- 163 (393)
..|--|++|-+.+.|+.|..|....+..-.....+....+..--+++.. -| .|+..-.+.| +..... +|
T Consensus 18 ~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G------~iLAScsYDgkVIiWke~~g~ 91 (299)
T KOG1332|consen 18 QLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFG------TILASCSYDGKVIIWKEENGR 91 (299)
T ss_pred hhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccC------cEeeEeecCceEEEEecCCCc
Confidence 3455677788888888777776554321011122211112222344432 46 6766656665 444443 33
Q ss_pred eEEEeeccCCccccccccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCC
Q 016199 164 TVLLTDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVT 224 (393)
Q Consensus 164 ~~~l~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t 224 (393)
-+... +.... -..+|+|+..|.+ .+.++.+++ .++-+|+.|+.++
T Consensus 92 w~k~~-e~~~h-~~SVNsV~wapheygl~LacasS--------------DG~vsvl~~~~~g 137 (299)
T KOG1332|consen 92 WTKAY-EHAAH-SASVNSVAWAPHEYGLLLACASS--------------DGKVSVLTYDSSG 137 (299)
T ss_pred hhhhh-hhhhh-cccceeecccccccceEEEEeeC--------------CCcEEEEEEcCCC
Confidence 11111 11111 2357899999865 344444333 3556788898773
No 390
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=46.24 E-value=51 Score=20.13 Aligned_cols=20 Identities=15% Similarity=0.237 Sum_probs=13.4
Q ss_pred CCcEEEcCCCCEEEEEeCCC
Q 016199 237 ANGVVLSPDQTHLVYCETSM 256 (393)
Q Consensus 237 ~ngi~~s~dg~~l~v~~~~~ 256 (393)
-...+++|||+.++++....
T Consensus 11 ~~~p~~SpDGk~i~f~s~~~ 30 (39)
T PF07676_consen 11 DGSPAWSPDGKYIYFTSNRN 30 (39)
T ss_dssp EEEEEE-TTSSEEEEEEECT
T ss_pred ccCEEEecCCCEEEEEecCC
Confidence 34567999999887766543
No 391
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=45.53 E-value=2.7e+02 Score=26.27 Aligned_cols=133 Identities=15% Similarity=0.162 Sum_probs=0.0
Q ss_pred CeEEEEEcCCC-------CCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc-eEEEeeccCCcc
Q 016199 104 GWIKRVTLNDS-------PADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS-TVLLTDEAEGQK 175 (393)
Q Consensus 104 g~I~~~~~~~~-------~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g-~~~l~~~~~g~~ 175 (393)
|+|+.|+.... . ...-....+.+.+|+.- +| +|.++ .+..|+.++.+. .+......-..+
T Consensus 62 Gri~v~~i~~~~~~~~~l~----~i~~~~~~g~V~ai~~~-~~------~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~ 129 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLK----LIHSTEVKGPVTAICSF-NG------RLVVA-VGNKLYVYDLDNSKTLLKKAFYDSP 129 (321)
T ss_dssp EEEEEEEECSS-----EEE----EEEEEEESS-EEEEEEE-TT------EEEEE-ETTEEEEEEEETTSSEEEEEEE-BS
T ss_pred cEEEEEEEEcccccceEEE----EEEEEeecCcceEhhhh-CC------EEEEe-ecCEEEEEEccCcccchhhheecce
Q ss_pred ccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC--ccCCCcEEEcCCCCEEEEEe
Q 016199 176 FKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD--LYFANGVVLSPDQTHLVYCE 253 (393)
Q Consensus 176 ~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~--l~~~ngi~~s~dg~~l~v~~ 253 (393)
. .+..+..-.+ .|+++|. ...-.+++|+.+..++..+..+ -.....+.+-.|++.+++++
T Consensus 130 ~-~i~sl~~~~~-~I~vgD~----------------~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D 191 (321)
T PF03178_consen 130 F-YITSLSVFKN-YILVGDA----------------MKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGD 191 (321)
T ss_dssp S-SEEEEEEETT-EEEEEES----------------SSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEE
T ss_pred E-EEEEEecccc-EEEEEEc----------------ccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEc
Q ss_pred CCCCeEEEEEecCC
Q 016199 254 TSMRRCRKFYIKGK 267 (393)
Q Consensus 254 ~~~~ri~~~~~~g~ 267 (393)
. .+.++.+..+..
T Consensus 192 ~-~gnl~~l~~~~~ 204 (321)
T PF03178_consen 192 K-DGNLFVLRYNPE 204 (321)
T ss_dssp T-TSEEEEEEE-SS
T ss_pred C-CCeEEEEEECCC
No 392
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=44.43 E-value=1.1e+02 Score=32.17 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=24.6
Q ss_pred CceEEEecCCCEEEEEecCCeEEEEEcCC
Q 016199 85 PEDLLYDAHSKLIYTGCEDGWIKRVTLND 113 (393)
Q Consensus 85 Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~ 113 (393)
-.++.|++|+..+|.|++.|.|....++.
T Consensus 127 VTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 127 VTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred EEEEEecccccEEeecCCCceEEEEEech
Confidence 34588999999999999999988777765
No 393
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=43.54 E-value=2.9e+02 Score=26.18 Aligned_cols=31 Identities=26% Similarity=0.356 Sum_probs=23.7
Q ss_pred ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199 234 LYFANGVVLSPDQTHLVYCETSMRRCRKFYIK 265 (393)
Q Consensus 234 l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~ 265 (393)
....||++++.|++.++-+.+ ..|+..++..
T Consensus 246 ~gkvngla~tSd~~~l~~~gt-d~r~r~wn~~ 276 (397)
T KOG4283|consen 246 YGKVNGLAWTSDARYLASCGT-DDRIRVWNME 276 (397)
T ss_pred cceeeeeeecccchhhhhccC-ccceEEeecc
Confidence 345799999999988877665 6788777754
No 394
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=42.74 E-value=1e+02 Score=29.47 Aligned_cols=54 Identities=13% Similarity=0.136 Sum_probs=35.3
Q ss_pred ccCCCcEEEEEeCCCCeE---EEEec--CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEe
Q 016199 210 EGKPNGRLLSFDPVTKET---KVLVS--DLYFANGVVLSPDQTHLVYCETSMRRCRKFYI 264 (393)
Q Consensus 210 e~~~~g~l~~~d~~t~~~---~~~~~--~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~ 264 (393)
-+...|.++.+|.+...- +.+.. ........+++.||. +++..+..+.|+|++.
T Consensus 324 ~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs-~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 324 LGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS-ILVLVCDDGTVWRWDR 382 (385)
T ss_pred hccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCc-EEEEEeCCCcEEEEEe
Confidence 345567899998765432 22222 233456788999996 4566667789999984
No 395
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=41.99 E-value=80 Score=21.68 Aligned_cols=16 Identities=19% Similarity=0.245 Sum_probs=12.5
Q ss_pred CeEEECCCCCEEEEEe
Q 016199 284 DNIRYDGEGHYLIALA 299 (393)
Q Consensus 284 ~~i~~d~~G~lwva~~ 299 (393)
..+++.+||++.++-.
T Consensus 4 ~~~~~q~DGkIlv~G~ 19 (55)
T TIGR02608 4 YAVAVQSDGKILVAGY 19 (55)
T ss_pred EEEEECCCCcEEEEEE
Confidence 3577889999988765
No 396
>PLN02153 epithiospecifier protein
Probab=40.89 E-value=3.3e+02 Score=25.96 Aligned_cols=17 Identities=6% Similarity=0.009 Sum_probs=13.5
Q ss_pred cEEEEEeCCCCeEEEEe
Q 016199 215 GRLLSFDPVTKETKVLV 231 (393)
Q Consensus 215 g~l~~~d~~t~~~~~~~ 231 (393)
..+++||+++.+.+.+.
T Consensus 159 ~~v~~yd~~~~~W~~l~ 175 (341)
T PLN02153 159 RTIEAYNIADGKWVQLP 175 (341)
T ss_pred ceEEEEECCCCeEeeCC
Confidence 35899999998887654
No 397
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=40.31 E-value=6.1e+02 Score=28.91 Aligned_cols=47 Identities=13% Similarity=-0.024 Sum_probs=34.2
Q ss_pred EEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCC
Q 016199 89 LYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSD 139 (393)
Q Consensus 89 a~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G 139 (393)
.+-.+++-+.+++..|.|...++.+.. .+......++...+...+|+
T Consensus 75 ~fl~d~~~i~v~~~~G~iilvd~et~~----~eivg~vd~GI~aaswS~De 121 (1265)
T KOG1920|consen 75 QFLADTNSICVITALGDIILVDPETLE----LEIVGNVDNGISAASWSPDE 121 (1265)
T ss_pred EEecccceEEEEecCCcEEEEcccccc----eeeeeeccCceEEEeecCCC
Confidence 344455668888999999888887765 66665556677778888877
No 398
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=38.85 E-value=87 Score=20.63 Aligned_cols=27 Identities=30% Similarity=0.236 Sum_probs=22.5
Q ss_pred eEEEecCCCEEEEEecCCeEEEEEcCC
Q 016199 87 DLLYDAHSKLIYTGCEDGWIKRVTLND 113 (393)
Q Consensus 87 ~ia~d~~g~~L~~~~~~g~I~~~~~~~ 113 (393)
.+.+.|..+.|-+++.+|.|..+..+.
T Consensus 16 ~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 16 CMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred EEEECCCCCEEEEEECCCeEEEEECCC
Confidence 578999999888999999888777643
No 399
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=36.85 E-value=58 Score=17.79 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=16.9
Q ss_pred CceEEEecCCCEEEEEecCCeEEEE
Q 016199 85 PEDLLYDAHSKLIYTGCEDGWIKRV 109 (393)
Q Consensus 85 Pe~ia~d~~g~~L~~~~~~g~I~~~ 109 (393)
..++.+.++++.+.++..++.+..+
T Consensus 15 i~~~~~~~~~~~~~~~~~d~~~~~~ 39 (40)
T smart00320 15 VTSVAFSPDGKYLASASDDGTIKLW 39 (40)
T ss_pred eeEEEECCCCCEEEEecCCCeEEEc
Confidence 3457777777767777777766554
No 400
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=36.75 E-value=5e+02 Score=26.86 Aligned_cols=67 Identities=9% Similarity=0.149 Sum_probs=46.6
Q ss_pred cccEEEcCCC-cEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeCCCC
Q 016199 179 TDGVDVADDG-MIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMR 257 (393)
Q Consensus 179 ~~~l~~d~dG-~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ 257 (393)
+-..+..++. .+.++. ..|.|..||...+. +.....-..|+-++++|+|..+ +..+.+|
T Consensus 262 v~~ca~sp~E~kLvlGC------------------~DgSiiLyD~~~~~-t~~~ka~~~P~~iaWHp~gai~-~V~s~qG 321 (545)
T PF11768_consen 262 VICCARSPSEDKLVLGC------------------EDGSIILYDTTRGV-TLLAKAEFIPTLIAWHPDGAIF-VVGSEQG 321 (545)
T ss_pred ceEEecCcccceEEEEe------------------cCCeEEEEEcCCCe-eeeeeecccceEEEEcCCCcEE-EEEcCCc
Confidence 3455666655 566663 35679999987654 3344444569999999999655 4455689
Q ss_pred eEEEEEec
Q 016199 258 RCRKFYIK 265 (393)
Q Consensus 258 ri~~~~~~ 265 (393)
.|..||..
T Consensus 322 elQ~FD~A 329 (545)
T PF11768_consen 322 ELQCFDMA 329 (545)
T ss_pred eEEEEEee
Confidence 99999974
No 401
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=35.97 E-value=1.3e+02 Score=27.91 Aligned_cols=54 Identities=17% Similarity=0.164 Sum_probs=33.6
Q ss_pred EEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeE----EC-CCCCCCCceEEEEEeCCCceEEE
Q 016199 96 LIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIA----FA-NSDPDADRITMIVADAYKGLLKI 159 (393)
Q Consensus 96 ~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~----~d-~~G~~~~~~~L~v~~~~~gl~~i 159 (393)
.|.+|+.+|.|+.+|+++-+ +..-...++-|.-|. +| -|. +|.|+.-.+.|+.+
T Consensus 197 cLViGTE~~~i~iLd~~af~----il~~~~lpsvPv~i~~~G~~devdy------RI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 197 CLVIGTESGEIYILDPQAFT----ILKQVQLPSVPVFISVSGQYDEVDY------RIVVACRDGKIYTI 255 (257)
T ss_pred eEEEEecCCeEEEECchhhe----eEEEEecCCCceEEEEEeeeeccce------EEEEEeCCCEEEEE
Confidence 58899999999999887644 222223344444333 33 455 78887656666654
No 402
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=35.67 E-value=4e+02 Score=25.48 Aligned_cols=98 Identities=15% Similarity=0.175 Sum_probs=0.0
Q ss_pred EEEEEecCCeEEEEEcCCCCCccee---eeeecCCCceeeeEECCCCCCCCceEEEEEeCCCc--eEEEeCCceEEEeec
Q 016199 96 LIYTGCEDGWIKRVTLNDSPADSLV---HNWINTGGRPLGIAFANSDPDADRITMIVADAYKG--LLKISGNSTVLLTDE 170 (393)
Q Consensus 96 ~L~~~~~~g~I~~~~~~~~~~~~~~---~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g--l~~id~~g~~~l~~~ 170 (393)
..|=|..-|.|...+..... . ..+.........++...+| .+....+..| |..+|...-+.+..-
T Consensus 151 LafPg~k~GqvQi~dL~~~~----~~~p~~I~AH~s~Iacv~Ln~~G------t~vATaStkGTLIRIFdt~~g~~l~E~ 220 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTK----PNAPSIINAHDSDIACVALNLQG------TLVATASTKGTLIRIFDTEDGTLLQEL 220 (346)
T ss_pred EEcCCCccceEEEEEhhhcC----cCCceEEEcccCceeEEEEcCCc------cEEEEeccCcEEEEEEEcCCCcEeeee
Q ss_pred cCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEE
Q 016199 171 AEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSF 220 (393)
Q Consensus 171 ~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~ 220 (393)
-.|..-..+..|++.++....... +..|.|..|
T Consensus 221 RRG~d~A~iy~iaFSp~~s~Lavs-----------------SdKgTlHiF 253 (346)
T KOG2111|consen 221 RRGVDRADIYCIAFSPNSSWLAVS-----------------SDKGTLHIF 253 (346)
T ss_pred ecCCchheEEEEEeCCCccEEEEE-----------------cCCCeEEEE
No 403
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=35.54 E-value=3.2e+02 Score=30.09 Aligned_cols=70 Identities=17% Similarity=0.284 Sum_probs=39.3
Q ss_pred cEEEEEeCCCCeEEEE-ecCccCCCcEEEcCCCCEEEEEeC-----CCCeEEEEEecCCCCcceeeeeccCCCCCCe
Q 016199 215 GRLLSFDPVTKETKVL-VSDLYFANGVVLSPDQTHLVYCET-----SMRRCRKFYIKGKNAGRVEKFIETLPGLPDN 285 (393)
Q Consensus 215 g~l~~~d~~t~~~~~~-~~~l~~~ngi~~s~dg~~l~v~~~-----~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~ 285 (393)
++|...|-++...+.+ ...-...-.-++||||+.|-+|.+ ....|++.++.....+.++.-+++ -.+|+-
T Consensus 329 ~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~-aaiprw 404 (912)
T TIGR02171 329 GNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVEN-AAIPRW 404 (912)
T ss_pred CeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeeccc-ccccce
Confidence 3566666665555544 333222233468999998866322 234699999976555545544432 235543
No 404
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=35.15 E-value=4.3e+02 Score=25.61 Aligned_cols=78 Identities=9% Similarity=0.143 Sum_probs=49.9
Q ss_pred cccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecC---------ccC--CCcEEEcCCCC
Q 016199 179 TDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSD---------LYF--ANGVVLSPDQT 247 (393)
Q Consensus 179 ~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~---------l~~--~ngi~~s~dg~ 247 (393)
+..+..-.+|.+|++..+... ..--.||.|...+.+.+++++- ..+ .-.+.++.+|.
T Consensus 185 ~yNmgAl~nGH~Y~asLSG~~------------~SPLKiY~w~tPts~PevIa~inV~~I~gAg~RhGDn~S~nlD~nGn 252 (442)
T PF15416_consen 185 SYNMGALVNGHSYLASLSGGK------------ASPLKIYYWETPTSAPEVIADINVGDIPGAGNRHGDNFSLNLDENGN 252 (442)
T ss_pred ccchhhhcCCeEEEEeccCCC------------CCceEEEEecCCCCCceEEEeeeeccCcccccccCcceeEEeccCCc
Confidence 334445568999999865421 1223588888777766665431 111 12355666654
Q ss_pred -EEEEEeCCCCeEEEEEecCCC
Q 016199 248 -HLVYCETSMRRCRKFYIKGKN 268 (393)
Q Consensus 248 -~l~v~~~~~~ri~~~~~~g~~ 268 (393)
++++.+.....+.|+.+.+-+
T Consensus 253 GyiFFgdnaat~ilR~~vsn~k 274 (442)
T PF15416_consen 253 GYIFFGDNAATNILRFTVSNYK 274 (442)
T ss_pred eEEEecCCccceEEEEEccCcc
Confidence 788888888899999998654
No 405
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=34.79 E-value=1.3e+02 Score=30.08 Aligned_cols=82 Identities=12% Similarity=0.211 Sum_probs=46.3
Q ss_pred CCCcEEEEEeCCCCeEEE-EecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECC
Q 016199 212 KPNGRLLSFDPVTKETKV-LVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDG 290 (393)
Q Consensus 212 ~~~g~l~~~d~~t~~~~~-~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~ 290 (393)
..+|.|--|.|...+.-. ++......++|+++++|+++ ++.-...++-.||+..- -+...+. .|-...+++++.
T Consensus 270 hsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YM-aTtG~Dr~~kIWDlR~~--~ql~t~~--tp~~a~~ls~Sq 344 (545)
T KOG1272|consen 270 HSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYM-ATTGLDRKVKIWDLRNF--YQLHTYR--TPHPASNLSLSQ 344 (545)
T ss_pred CCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEE-eecccccceeEeeeccc--cccceee--cCCCcccccccc
Confidence 345667777776543211 12334556899999999654 43334567778888533 2222222 232245677777
Q ss_pred CCCEEEEE
Q 016199 291 EGHYLIAL 298 (393)
Q Consensus 291 ~G~lwva~ 298 (393)
.|.+-++.
T Consensus 345 kglLA~~~ 352 (545)
T KOG1272|consen 345 KGLLALSY 352 (545)
T ss_pred ccceeeec
Confidence 77544443
No 406
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=34.67 E-value=2.6e+02 Score=32.87 Aligned_cols=139 Identities=15% Similarity=0.152 Sum_probs=69.6
Q ss_pred EEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCce-eeeEECCCCCCCCceEEEEEeCCCceEEEeCCc-eE
Q 016199 88 LLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRP-LGIAFANSDPDADRITMIVADAYKGLLKISGNS-TV 165 (393)
Q Consensus 88 ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p-~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g-~~ 165 (393)
+.-+++|.. +-.++++||.|++.... |+........+ ..|....|| .+|. -.+..|.-++..+ .+
T Consensus 368 v~~~~~ge~--lRlHd~~LY~~d~~~~~----Wk~~~~~~d~~~S~Ls~qgdG------~lYA-k~~~~l~nLSs~~~~~ 434 (1774)
T PF11725_consen 368 VHTDPDGEQ--LRLHDDRLYQFDPNTAR----WKPPPDKSDTPFSSLSRQGDG------KLYA-KDDDTLVNLSSGQMSE 434 (1774)
T ss_pred cccCCCCCe--EEeecCceeeeccccce----ecCCCCcccchhhhhcccCCC------ceEe-cCCCceeecCCCCcch
Confidence 344555542 23467788888877543 44221222222 456667788 8887 4455555554433 11
Q ss_pred EEeeccCCccccccccEEEcCCCcE-EEEeCCCccchhhheehhcccCCCcEEEEEeCCCCe------EE-EEecCccCC
Q 016199 166 LLTDEAEGQKFKLTDGVDVADDGMI-YFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKE------TK-VLVSDLYFA 237 (393)
Q Consensus 166 ~l~~~~~g~~~~~~~~l~~d~dG~l-~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~------~~-~~~~~l~~~ 237 (393)
.. +++ +..+.+.++|.+ ..+..- ...-.|...++..+. +. .+.++...+
T Consensus 435 ~~---v~~-----l~sfSv~~~g~vA~L~~~d---------------~q~~qL~~m~~~~a~~~p~~~~~L~L~dG~a~A 491 (1774)
T PF11725_consen 435 AE---VDK-----LKSFSVAPDGTVAMLTGKD---------------GQTLQLHDMSPVDAPPTPRKTKTLQLADGKAQA 491 (1774)
T ss_pred hh---hhh-----cccccccCCCceeeeecCC---------------CcceeeeccCccccccCccceeeeeccCCchhh
Confidence 11 111 123446667754 223200 111123444433211 11 123344456
Q ss_pred CcEEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199 238 NGVVLSPDQTHLVYCETSMRRCRKFYIK 265 (393)
Q Consensus 238 ngi~~s~dg~~l~v~~~~~~ri~~~~~~ 265 (393)
..|.++.| .|||.++ .++||.-++.
T Consensus 492 ~~VgLs~d--rLFvADs-eGkLYsa~l~ 516 (1774)
T PF11725_consen 492 QSVGLSND--RLFVADS-EGKLYSADLP 516 (1774)
T ss_pred hheeecCC--eEEEEeC-CCCEEecccc
Confidence 67888766 6999886 6788887764
No 407
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=34.33 E-value=4.4e+02 Score=25.56 Aligned_cols=162 Identities=13% Similarity=0.219 Sum_probs=81.9
Q ss_pred CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCc-ceeeeeecCCCceeeeEECCCCCCCCceEEEEEeC-CCceEEEe
Q 016199 83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPAD-SLVHNWINTGGRPLGIAFANSDPDADRITMIVADA-YKGLLKIS 160 (393)
Q Consensus 83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~-~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~-~~gl~~id 160 (393)
..+..+.+..+-.+||+|..+|.+..+.....-+. ...+.+.....+..++.|+..- +..+... +.++.-.-
T Consensus 69 ~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~------e~V~s~~~dk~~~~hc 142 (404)
T KOG1409|consen 69 SPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTH------EWVLSTGKDKQFAWHC 142 (404)
T ss_pred CCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCc------eeEEEeccccceEEEe
Confidence 44566788888889999999999988876432111 0122222233456677777654 4433322 33332221
Q ss_pred -CCceEEEeeccCCcccc-ccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCe-EEEEecCccCC
Q 016199 161 -GNSTVLLTDEAEGQKFK-LTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKE-TKVLVSDLYFA 237 (393)
Q Consensus 161 -~~g~~~l~~~~~g~~~~-~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~-~~~~~~~l~~~ 237 (393)
..| ...++..+. .+.++..|-. ..|++|- .+....+++.+..=. +..+-....-.
T Consensus 143 ~e~~-----~~lg~Y~~~~~~t~~~~d~~-~~fvGd~----------------~gqvt~lr~~~~~~~~i~~~~~h~~~~ 200 (404)
T KOG1409|consen 143 TESG-----NRLGGYNFETPASALQFDAL-YAFVGDH----------------SGQITMLKLEQNGCQLITTFNGHTGEV 200 (404)
T ss_pred eccC-----CcccceEeeccCCCCceeeE-EEEeccc----------------ccceEEEEEeecCCceEEEEcCcccce
Confidence 111 001111100 0112222222 4555552 234456677664322 22222222223
Q ss_pred CcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCccee
Q 016199 238 NGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVE 273 (393)
Q Consensus 238 ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~ 273 (393)
...++++.. .+++++....++..|++-+.+....+
T Consensus 201 ~~l~Wd~~~-~~LfSg~~d~~vi~wdigg~~g~~~e 235 (404)
T KOG1409|consen 201 TCLKWDPGQ-RLLFSGASDHSVIMWDIGGRKGTAYE 235 (404)
T ss_pred EEEEEcCCC-cEEEeccccCceEEEeccCCcceeee
Confidence 445566655 57788888999999999765433333
No 408
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.04 E-value=3.9e+02 Score=24.85 Aligned_cols=154 Identities=9% Similarity=0.103 Sum_probs=72.7
Q ss_pred eEEEecCC-CEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCc-eEEEeCCce
Q 016199 87 DLLYDAHS-KLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKG-LLKISGNST 164 (393)
Q Consensus 87 ~ia~d~~g-~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~g-l~~id~~g~ 164 (393)
++++.++. +.+++...||.+..|+..-...+ +..+.........+...... ++.++..+..| |-..+++-.
T Consensus 65 dV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~P--i~~~kEH~~EV~Svdwn~~~-----r~~~ltsSWD~TiKLW~~~r~ 137 (311)
T KOG0277|consen 65 DVAWSENHENQVIAASGDGSLRLFDLTMPSKP--IHKFKEHKREVYSVDWNTVR-----RRIFLTSSWDGTIKLWDPNRP 137 (311)
T ss_pred EeeecCCCcceEEEEecCceEEEeccCCCCcc--hhHHHhhhhheEEecccccc-----ceeEEeeccCCceEeecCCCC
Confidence 46676643 36788888998888874322110 12222222223333333221 13333334333 444455431
Q ss_pred EEEeeccCCccccccccEEEcC-CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEc
Q 016199 165 VLLTDEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLS 243 (393)
Q Consensus 165 ~~l~~~~~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s 243 (393)
..+. ...|.. ..+...++.| .++++.+.++ .++-+++-++..++.....+.. ..+-...++
T Consensus 138 ~Sv~-Tf~gh~-~~Iy~a~~sp~~~nlfas~Sg---------------d~~l~lwdvr~~gk~~~i~ah~-~Eil~cdw~ 199 (311)
T KOG0277|consen 138 NSVQ-TFNGHN-SCIYQAAFSPHIPNLFASASG---------------DGTLRLWDVRSPGKFMSIEAHN-SEILCCDWS 199 (311)
T ss_pred cceE-eecCCc-cEEEEEecCCCCCCeEEEccC---------------CceEEEEEecCCCceeEEEecc-ceeEeeccc
Confidence 0111 122221 2234555666 4577665422 2233444444443333322222 223334455
Q ss_pred CCCCEEEEEeCCCCeEEEEEec
Q 016199 244 PDQTHLVYCETSMRRCRKFYIK 265 (393)
Q Consensus 244 ~dg~~l~v~~~~~~ri~~~~~~ 265 (393)
.-.+.++++...++.|..||+.
T Consensus 200 ky~~~vl~Tg~vd~~vr~wDir 221 (311)
T KOG0277|consen 200 KYNHNVLATGGVDNLVRGWDIR 221 (311)
T ss_pred ccCCcEEEecCCCceEEEEehh
Confidence 5556788888888899999985
No 409
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=33.14 E-value=1e+02 Score=28.61 Aligned_cols=57 Identities=12% Similarity=0.105 Sum_probs=34.9
Q ss_pred ccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCE
Q 016199 234 LYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHY 294 (393)
Q Consensus 234 l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~l 294 (393)
....+|+.+-+|++ ++.+.-+.+||..|....-+ ...++. ...+--+.+++.++-.+
T Consensus 251 npGv~gvrIRpD~K-IlATAGWD~RiRVyswrtl~--pLAVLk-yHsagvn~vAfspd~~l 307 (323)
T KOG0322|consen 251 NPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRTLN--PLAVLK-YHSAGVNAVAFSPDCEL 307 (323)
T ss_pred CCCccceEEccCCc-EEeecccCCcEEEEEeccCC--chhhhh-hhhcceeEEEeCCCCch
Confidence 34568999999996 66777789999999874221 111111 11122355777776333
No 410
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.77 E-value=6.1e+02 Score=26.73 Aligned_cols=150 Identities=11% Similarity=0.119 Sum_probs=82.8
Q ss_pred EEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeeecCCCcee--eeEECCCCCCCCceEEEEEeCCCceEEEeCCc-e
Q 016199 88 LLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWINTGGRPL--GIAFANSDPDADRITMIVADAYKGLLKISGNS-T 164 (393)
Q Consensus 88 ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~~~~~~p~--gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g-~ 164 (393)
+-++|-.-.+.++..+|.+..|+-++.+ .++.+ +.+.-|. +..+.+++ -+.+|..+..|..++.++ .
T Consensus 19 Vd~HPtePw~la~LynG~V~IWnyetqt---mVksf-eV~~~PvRa~kfiaRkn------Wiv~GsDD~~IrVfnynt~e 88 (794)
T KOG0276|consen 19 VDFHPTEPWILAALYNGDVQIWNYETQT---MVKSF-EVSEVPVRAAKFIARKN------WIVTGSDDMQIRVFNYNTGE 88 (794)
T ss_pred eecCCCCceEEEeeecCeeEEEecccce---eeeee-eecccchhhheeeeccc------eEEEecCCceEEEEecccce
Confidence 4456665556677779999999877654 13333 2233331 22223333 344443344566667655 2
Q ss_pred EEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcC
Q 016199 165 VLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSP 244 (393)
Q Consensus 165 ~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~ 244 (393)
++...+... .++..|++.|..=..++. |. ...-.+|-|+..-....++...-++.=.|++.|
T Consensus 89 kV~~FeAH~---DyIR~iavHPt~P~vLts-SD--------------Dm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnP 150 (794)
T KOG0276|consen 89 KVKTFEAHS---DYIRSIAVHPTLPYVLTS-SD--------------DMTIKLWDWENEWACEQTFEGHEHYVMQVAFNP 150 (794)
T ss_pred eeEEeeccc---cceeeeeecCCCCeEEec-CC--------------ccEEEEeeccCceeeeeEEcCcceEEEEEEecC
Confidence 222111111 345678888876444442 11 223345556543333344444556677788888
Q ss_pred CCCEEEEEeCCCCeEEEEEec
Q 016199 245 DQTHLVYCETSMRRCRKFYIK 265 (393)
Q Consensus 245 dg~~l~v~~~~~~ri~~~~~~ 265 (393)
....-+.+.+...+|-.|.+.
T Consensus 151 kD~ntFaS~sLDrTVKVWslg 171 (794)
T KOG0276|consen 151 KDPNTFASASLDRTVKVWSLG 171 (794)
T ss_pred CCccceeeeeccccEEEEEcC
Confidence 777778888888877777763
No 411
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=32.76 E-value=6.6e+02 Score=27.08 Aligned_cols=46 Identities=13% Similarity=0.133 Sum_probs=31.2
Q ss_pred ceEEEECCCCcEEEEeeCCC---------CCccEEEEEeCCEEEEEecCCCeEEE
Q 016199 336 SGVFIVDLDGKPIAHYYDPE---------MSLISSAIKIGDHLYCGSVHHRGILH 381 (393)
Q Consensus 336 ~~v~~~d~~g~~~~~~~d~~---------~~~~~~~~~~~g~Lyigs~~~~~i~~ 381 (393)
+.|.-+.+=|+++..+..|. ......+...++.+|++....+|+.-
T Consensus 289 n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~gLriA~AvdsfiyfanIRP~ykWg 343 (1189)
T KOG2041|consen 289 NKVHFYSPYGHIVGTLKVPGSCITGLSWEGTGLRIAIAVDSFIYFANIRPEYKWG 343 (1189)
T ss_pred ceEEEeccchhheEEEecCCceeeeeEEcCCceEEEEEecceEEEEeecccceEE
Confidence 34555677788877777654 12334556678899999888877654
No 412
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=32.60 E-value=3.8e+02 Score=24.30 Aligned_cols=16 Identities=19% Similarity=0.173 Sum_probs=12.8
Q ss_pred eEEEEEeCCCceEEEeC
Q 016199 145 ITMIVADAYKGLLKISG 161 (393)
Q Consensus 145 ~~L~v~~~~~gl~~id~ 161 (393)
++|++| ...||+.++.
T Consensus 8 ~~L~vG-t~~Gl~~~~~ 23 (275)
T PF00780_consen 8 DRLLVG-TEDGLYVYDL 23 (275)
T ss_pred CEEEEE-ECCCEEEEEe
Confidence 489999 5678988876
No 413
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=32.26 E-value=5.9e+02 Score=26.35 Aligned_cols=87 Identities=9% Similarity=0.142 Sum_probs=47.6
Q ss_pred EEEEEeCCCceEEEeCCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCC
Q 016199 146 TMIVADAYKGLLKISGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVT 224 (393)
Q Consensus 146 ~L~v~~~~~gl~~id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t 224 (393)
.+.++..++.+..++..| ++.......+. +-.-...+||.-.++. +..++.++--.+
T Consensus 77 ~~~i~s~DGkf~il~k~~rVE~sv~AH~~A----~~~gRW~~dGtgLlt~------------------GEDG~iKiWSrs 134 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKSARVERSISAHAAA----ISSGRWSPDGAGLLTA------------------GEDGVIKIWSRS 134 (737)
T ss_pred eEEEEcCCceEEEecccchhhhhhhhhhhh----hhhcccCCCCceeeee------------------cCCceEEEEecc
Confidence 688887667777778777 43322221121 1122456777655652 222344444445
Q ss_pred CeEEE-EecCccCCCcEEEcCCCCEEEEEeC
Q 016199 225 KETKV-LVSDLYFANGVVLSPDQTHLVYCET 254 (393)
Q Consensus 225 ~~~~~-~~~~l~~~ngi~~s~dg~~l~v~~~ 254 (393)
|.++. ++..-.....+++.|+.+.+++|..
T Consensus 135 GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g 165 (737)
T KOG1524|consen 135 GMLRSTVVQNEESIRCARWAPNSNSIVFCQG 165 (737)
T ss_pred chHHHHHhhcCceeEEEEECCCCCceEEecC
Confidence 65443 2333334577888888877777754
No 414
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=31.90 E-value=4.4e+02 Score=24.76 Aligned_cols=95 Identities=11% Similarity=0.135 Sum_probs=47.9
Q ss_pred CCeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCCEEEEEecCcchhhhhhhcCcchhhhhhhhhhhhCCCCCCCCC
Q 016199 256 MRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSS 335 (393)
Q Consensus 256 ~~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~lwva~~~~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 335 (393)
...+-.+++++...+. .....++. -+...+++|+++-+.....|.
T Consensus 137 dht~k~~~~~~~s~~~-~~h~~~~~--~ns~~~snd~~~~~~Vgds~~-------------------------------- 181 (344)
T KOG4532|consen 137 DHTGKTMVVSGDSNKF-AVHNQNLT--QNSLHYSNDPSWGSSVGDSRR-------------------------------- 181 (344)
T ss_pred CcceeEEEEecCcccc-eeeccccc--eeeeEEcCCCceEEEecCCCc--------------------------------
Confidence 4455555555432222 22221222 345788999986665554432
Q ss_pred ceEEEECCCCcEEEE-eeCCC-CCccEEEEEeCCEEEEEecCCCeEEEEeCC
Q 016199 336 SGVFIVDLDGKPIAH-YYDPE-MSLISSAIKIGDHLYCGSVHHRGILHLDVN 385 (393)
Q Consensus 336 ~~v~~~d~~g~~~~~-~~d~~-~~~~~~~~~~~g~Lyigs~~~~~i~~~~~~ 385 (393)
--.+.+|.+++.+.. +..+. ....+.-....+.+|.....+.+++.+|+.
T Consensus 182 Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR 233 (344)
T KOG4532|consen 182 VFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVR 233 (344)
T ss_pred ceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEec
Confidence 124566777776665 33232 222222233344455555567778877753
No 415
>PLN02153 epithiospecifier protein
Probab=31.73 E-value=4.6e+02 Score=24.94 Aligned_cols=17 Identities=29% Similarity=0.448 Sum_probs=13.5
Q ss_pred cEEEEEeCCCCeEEEEe
Q 016199 215 GRLLSFDPVTKETKVLV 231 (393)
Q Consensus 215 g~l~~~d~~t~~~~~~~ 231 (393)
..+++||+.+++.+.+.
T Consensus 101 ~~v~~yd~~t~~W~~~~ 117 (341)
T PLN02153 101 SDFYSYDTVKNEWTFLT 117 (341)
T ss_pred CcEEEEECCCCEEEEec
Confidence 46899999988887653
No 416
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=31.39 E-value=5.2e+02 Score=25.43 Aligned_cols=116 Identities=9% Similarity=0.122 Sum_probs=69.9
Q ss_pred eeeeEECC--CCCCCCceEEEEEeCCCceEEEeCC-ceEEE-eeccCCccccccccEEEcCCC-cEEEEeCCCccchhhh
Q 016199 130 PLGIAFAN--SDPDADRITMIVADAYKGLLKISGN-STVLL-TDEAEGQKFKLTDGVDVADDG-MIYFTDASNKYYLREY 204 (393)
Q Consensus 130 p~gl~~d~--~G~~~~~~~L~v~~~~~gl~~id~~-g~~~l-~~~~~g~~~~~~~~l~~d~dG-~l~~td~~~~~~~~~~ 204 (393)
-+||++.+ .| +|.-||-..+|+...+. |.-.. ...+.+ ....+.++..+|.- +++++.
T Consensus 214 Gy~LdWSp~~~g------~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~g-H~~SVEDLqWSptE~~vfaSc---------- 276 (440)
T KOG0302|consen 214 GYGLDWSPIKTG------RLLSGDCVKGIHLWEPSTGSWKVDQRPFTG-HTKSVEDLQWSPTEDGVFASC---------- 276 (440)
T ss_pred ceeeeccccccc------ccccCccccceEeeeeccCceeecCccccc-cccchhhhccCCccCceEEee----------
Confidence 46777765 57 78777777777776543 21000 001122 22456788888854 677765
Q ss_pred eehhcccCCCcEEEEEeCCCCeE-EEE--ecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEecCCCCc
Q 016199 205 ILDIFEGKPNGRLLSFDPVTKET-KVL--VSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAG 270 (393)
Q Consensus 205 ~~~~~e~~~~g~l~~~d~~t~~~-~~~--~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g~~~~ 270 (393)
+..|.|-.+|...+.. ..+ .....-.|-|.+..+.- ++.+...++.+..+++..-+.+
T Consensus 277 -------S~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~ 337 (440)
T KOG0302|consen 277 -------SCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSG 337 (440)
T ss_pred -------ecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCC
Confidence 4566777777655421 111 11223467788877764 7788888899999998755444
No 417
>PF13964 Kelch_6: Kelch motif
Probab=30.82 E-value=1e+02 Score=19.99 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=15.1
Q ss_pred CCcEEEEEeCCCCeEEEEe
Q 016199 213 PNGRLLSFDPVTKETKVLV 231 (393)
Q Consensus 213 ~~g~l~~~d~~t~~~~~~~ 231 (393)
....+++||+.+++.+.+.
T Consensus 26 ~~~~v~~yd~~t~~W~~~~ 44 (50)
T PF13964_consen 26 YSNDVERYDPETNTWEQLP 44 (50)
T ss_pred ccccEEEEcCCCCcEEECC
Confidence 4567999999999887653
No 418
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=30.08 E-value=7.8e+02 Score=27.11 Aligned_cols=127 Identities=17% Similarity=0.251 Sum_probs=73.5
Q ss_pred EEEEEeCC-CceEEEeCCc--eEEEeeccCCccccccccEEEcC-CCcEEEEeCCCccchhhheehhcccCCCcEEEEEe
Q 016199 146 TMIVADAY-KGLLKISGNS--TVLLTDEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFD 221 (393)
Q Consensus 146 ~L~v~~~~-~gl~~id~~g--~~~l~~~~~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d 221 (393)
.+|.++.. ..+.+....+ ...+ .+...-.+.++++|- .+++|++|... ..+-.-+
T Consensus 450 ~i~~~d~~~~~i~~~~~~~~~~~~~----~~~g~~~~~~lavD~~~~~~y~tDe~~-----------------~~i~v~~ 508 (877)
T KOG1215|consen 450 RIYWADLSDEKICRASQDGSSECEL----CGDGLCIPEGLAVDWIGDNIYWTDEGN-----------------CLIEVAD 508 (877)
T ss_pred EEEEEeccCCeEeeeccCCCccceE----eccCccccCcEEEEeccCCceecccCC-----------------ceeEEEE
Confidence 67777653 3455555544 1111 111123356888887 45899998432 2333333
Q ss_pred CCCCe-EEEEecCccCCCcEEEcCCCCEEEEEeCCC-CeEEEEEecCCCCcceeeeeccCCCCCCeEEECCCCC--EEE
Q 016199 222 PVTKE-TKVLVSDLYFANGVVLSPDQTHLVYCETSM-RRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGH--YLI 296 (393)
Q Consensus 222 ~~t~~-~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~-~ri~~~~~~g~~~~~~~~~~~~l~g~P~~i~~d~~G~--lwv 296 (393)
.+... ...+...+..|..++++|-...+||++... .+|.|-.++|.. .+......-..|+++++|-... +|+
T Consensus 509 ~~g~~~~vl~~~~l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~---~~~l~~~~~~~p~glt~d~~~~~~yw~ 584 (877)
T KOG1215|consen 509 LDGSSRKVLVSKDLDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGSE---RAVLVTNGILWPNGLTIDYETDRLYWA 584 (877)
T ss_pred ccCCceeEEEecCCCCccceeeccccCeeEEecCCCCchhhhhcCCCCC---ceEEEeCCccCCCcceEEeecceeEEE
Confidence 33222 223344457889999999988999999873 356666665542 2222222235799999886544 554
No 419
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=29.88 E-value=4.8e+02 Score=24.56 Aligned_cols=52 Identities=15% Similarity=-0.019 Sum_probs=30.4
Q ss_pred CcEEEEEeCCCCeEEEEecC--ccCCCcEEEcCCCCEEEEEeCCC----CeEEEEEecC
Q 016199 214 NGRLLSFDPVTKETKVLVSD--LYFANGVVLSPDQTHLVYCETSM----RRCRKFYIKG 266 (393)
Q Consensus 214 ~g~l~~~d~~t~~~~~~~~~--l~~~ngi~~s~dg~~l~v~~~~~----~ri~~~~~~g 266 (393)
...+++||+.+++.+.+..- .......+...++ .||+..-.. ..+++||++.
T Consensus 138 ~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~-~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 138 SNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQN-ELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred CceEEEEcCCCCCeeECCCCCCCCCCcceEEEECC-EEEEEcCCCCccccceEEEecCC
Confidence 34699999999888766421 1122223333444 677765332 2467888754
No 420
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=29.57 E-value=5.9e+02 Score=25.50 Aligned_cols=129 Identities=13% Similarity=0.058 Sum_probs=69.4
Q ss_pred eEEEEEcCCCCCcceeeeeecCCC----ceeeeEECCCCCCCCceEEEEEeCC------------CceEEEeCCc--eEE
Q 016199 105 WIKRVTLNDSPADSLVHNWINTGG----RPLGIAFANSDPDADRITMIVADAY------------KGLLKISGNS--TVL 166 (393)
Q Consensus 105 ~I~~~~~~~~~~~~~~~~~~~~~~----~p~gl~~d~~G~~~~~~~L~v~~~~------------~gl~~id~~g--~~~ 166 (393)
.+|+|+..... ++.+..... ..+.++..+.| .||+-... .-+..++... -+.
T Consensus 99 dLy~Yn~k~~e----Wkk~~spn~P~pRsshq~va~~s~------~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweq 168 (521)
T KOG1230|consen 99 DLYSYNTKKNE----WKKVVSPNAPPPRSSHQAVAVPSN------ILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQ 168 (521)
T ss_pred eeeEEeccccc----eeEeccCCCcCCCccceeEEeccC------eEEEeccccCCcchhhhhhhhheeeeeeccchhee
Confidence 58899887766 666643221 23566677788 78886432 1244445433 223
Q ss_pred EeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCC-----CcEE
Q 016199 167 LTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFA-----NGVV 241 (393)
Q Consensus 167 l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~-----ngi~ 241 (393)
+. ...+...+.-|-|+.-..-.|.|+-... ..++|.| .+-||+||.++-+...+...-..| ..+.
T Consensus 169 l~-~~g~PS~RSGHRMvawK~~lilFGGFhd--~nr~y~Y-------yNDvy~FdLdtykW~Klepsga~PtpRSGcq~~ 238 (521)
T KOG1230|consen 169 LE-FGGGPSPRSGHRMVAWKRQLILFGGFHD--SNRDYIY-------YNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFS 238 (521)
T ss_pred ec-cCCCCCCCccceeEEeeeeEEEEcceec--CCCceEE-------eeeeEEEeccceeeeeccCCCCCCCCCCcceEE
Confidence 32 1122223445566666666666662110 0112222 235899999887776664432122 2466
Q ss_pred EcCCCCEEEEEe
Q 016199 242 LSPDQTHLVYCE 253 (393)
Q Consensus 242 ~s~dg~~l~v~~ 253 (393)
++|+|..+++..
T Consensus 239 vtpqg~i~vyGG 250 (521)
T KOG1230|consen 239 VTPQGGIVVYGG 250 (521)
T ss_pred ecCCCcEEEEcc
Confidence 778887665544
No 421
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=29.55 E-value=4.6e+02 Score=24.26 Aligned_cols=66 Identities=15% Similarity=0.150 Sum_probs=41.9
Q ss_pred eEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeee-ecCCCceeeeEE-CCCCCCCCceEEEEEeCCCc-eEEEeCCc
Q 016199 87 DLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNW-INTGGRPLGIAF-ANSDPDADRITMIVADAYKG-LLKISGNS 163 (393)
Q Consensus 87 ~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~-~~~~~~p~gl~~-d~~G~~~~~~~L~v~~~~~g-l~~id~~g 163 (393)
+|-.||..+-++++..|+.++.++.+++. ++.. .....-.+.++. ..++ .++-+ +..| +..+|.+.
T Consensus 119 am~ldP~enSi~~AgGD~~~y~~dlE~G~----i~r~~rGHtDYvH~vv~R~~~~------qilsG-~EDGtvRvWd~kt 187 (325)
T KOG0649|consen 119 AMWLDPSENSILFAGGDGVIYQVDLEDGR----IQREYRGHTDYVHSVVGRNANG------QILSG-AEDGTVRVWDTKT 187 (325)
T ss_pred eeEeccCCCcEEEecCCeEEEEEEecCCE----EEEEEcCCcceeeeeeecccCc------ceeec-CCCccEEEEeccc
Confidence 47788766656666689999999999886 4433 222233455554 4567 77777 4455 44457554
No 422
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=29.24 E-value=8.9e+02 Score=27.49 Aligned_cols=239 Identities=12% Similarity=0.108 Sum_probs=0.0
Q ss_pred ecCCCEEEEEecCCeEEEEEcCCC--CCcceeeeeec-----CCCceeeeEECC---CCCCCCceEEEEEeCCCceEEEe
Q 016199 91 DAHSKLIYTGCEDGWIKRVTLNDS--PADSLVHNWIN-----TGGRPLGIAFAN---SDPDADRITMIVADAYKGLLKIS 160 (393)
Q Consensus 91 d~~g~~L~~~~~~g~I~~~~~~~~--~~~~~~~~~~~-----~~~~p~gl~~d~---~G~~~~~~~L~v~~~~~gl~~id 160 (393)
+.|...+.+++.||-|..|+.... .....+..|.. .+.+-.++.+|. .| .|+++..-.-|..+|
T Consensus 1120 e~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G------~Ll~tGd~r~IRIWD 1193 (1387)
T KOG1517|consen 1120 EQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG------HLLVTGDVRSIRIWD 1193 (1387)
T ss_pred ccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC------eEEecCCeeEEEEEe
Q ss_pred CCceEEEeeccCCccccccccEEEcC-CCcEEEEeCCCccchhhheehhcccCCCcEEEEEe----CCCCeEEEEecCcc
Q 016199 161 GNSTVLLTDEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFD----PVTKETKVLVSDLY 235 (393)
Q Consensus 161 ~~g~~~l~~~~~g~~~~~~~~l~~d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d----~~t~~~~~~~~~l~ 235 (393)
.+......+-.-+.. ..+..+.-+. .|+++++- -..|.|-.|| +....+........
T Consensus 1194 a~~E~~~~diP~~s~-t~vTaLS~~~~~gn~i~AG-----------------faDGsvRvyD~R~a~~ds~v~~~R~h~~ 1255 (1387)
T KOG1517|consen 1194 AHKEQVVADIPYGSS-TLVTALSADLVHGNIIAAG-----------------FADGSVRVYDRRMAPPDSLVCVYREHND 1255 (1387)
T ss_pred cccceeEeecccCCC-ccceeecccccCCceEEEe-----------------ecCCceEEeecccCCccccceeecccCC
Q ss_pred C--CCcEEEcCCCCEEEEEeCCCCeEEEEEecC-CCCcceeeeeccCCCC-CCeEEECCCCCEEEEEecCcchhhhhhhc
Q 016199 236 F--ANGVVLSPDQTHLVYCETSMRRCRKFYIKG-KNAGRVEKFIETLPGL-PDNIRYDGEGHYLIALATEFSTYWDLAYR 311 (393)
Q Consensus 236 ~--~ngi~~s~dg~~l~v~~~~~~ri~~~~~~g-~~~~~~~~~~~~l~g~-P~~i~~d~~G~lwva~~~~r~~~~~~~~~ 311 (393)
. ..++.+-+.|-.=+|+.+.+|.|..+|+.. .+..-......-.-|. -..+.+.++-.+..+....
T Consensus 1256 ~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q---------- 1325 (1387)
T KOG1517|consen 1256 VEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQ---------- 1325 (1387)
T ss_pred cccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcc----------
Q ss_pred CcchhhhhhhhhhhhCCCCCCCCCceEEEECCCCcEEEEeeCCC------CCccEEEEEeC-CEEEEEecCCCeEEEEeC
Q 016199 312 YPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPE------MSLISSAIKIG-DHLYCGSVHHRGILHLDV 384 (393)
Q Consensus 312 ~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~d~~g~~~~~~~d~~------~~~~~~~~~~~-g~Lyigs~~~~~i~~~~~ 384 (393)
.+..++.+|+.+..+.... ....++..-+. .-+...+..+.++..|..
T Consensus 1326 -------------------------~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1326 -------------------------LIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSC 1380 (1387)
T ss_pred -------------------------eEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeec
Q ss_pred CCCC
Q 016199 385 NQHP 388 (393)
Q Consensus 385 ~~~~ 388 (393)
.+..
T Consensus 1381 ~k~~ 1384 (1387)
T KOG1517|consen 1381 EKPR 1384 (1387)
T ss_pred CCcC
No 423
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=26.80 E-value=5.4e+02 Score=24.18 Aligned_cols=51 Identities=14% Similarity=0.165 Sum_probs=28.0
Q ss_pred cEEEEEeCCCCeEE---EEecCccCC--CcEEEcCCCCEEEEEeCC-----CCeEEEEEecC
Q 016199 215 GRLLSFDPVTKETK---VLVSDLYFA--NGVVLSPDQTHLVYCETS-----MRRCRKFYIKG 266 (393)
Q Consensus 215 g~l~~~d~~t~~~~---~~~~~l~~~--ngi~~s~dg~~l~v~~~~-----~~ri~~~~~~g 266 (393)
..+++||+.+.+.+ .....+..+ +..+..-++ .||+..-. .+.+++||+..
T Consensus 88 ~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~-~iYv~GG~~~~~~~~~v~~yd~~~ 148 (323)
T TIGR03548 88 SSVYRITLDESKEELICETIGNLPFTFENGSACYKDG-TLYVGGGNRNGKPSNKSYLFNLET 148 (323)
T ss_pred eeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECC-EEEEEeCcCCCccCceEEEEcCCC
Confidence 46899998776642 222233322 122222344 67776532 35789999753
No 424
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.72 E-value=8.8e+02 Score=26.61 Aligned_cols=61 Identities=10% Similarity=0.155 Sum_probs=33.9
Q ss_pred CcEEEcCCCCEEEEEeCCCCeEEEEEec--CCCCcceeeeeccCCCCCCeEEECCCCC--EEEEEec
Q 016199 238 NGVVLSPDQTHLVYCETSMRRCRKFYIK--GKNAGRVEKFIETLPGLPDNIRYDGEGH--YLIALAT 300 (393)
Q Consensus 238 ngi~~s~dg~~l~v~~~~~~ri~~~~~~--g~~~~~~~~~~~~l~g~P~~i~~d~~G~--lwva~~~ 300 (393)
..++++.|- ...+++..+|.|.+|.=+ .++ +....+......--.|+++-.+|. ++|++..
T Consensus 129 s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDr-gsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~ 193 (933)
T KOG2114|consen 129 SSLAVSEDL-KTIVCGFTNGLVICYKGDILRDR-GSRQDYSHRGKEPITGLALRSDGKSVLFVATTE 193 (933)
T ss_pred eEEEEEccc-cEEEEEecCcEEEEEcCcchhcc-ccceeeeccCCCCceeeEEecCCceeEEEEecc
Confidence 457888885 456778888988887521 111 221222212222236777766666 4777653
No 425
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=26.60 E-value=1e+03 Score=27.39 Aligned_cols=59 Identities=10% Similarity=0.118 Sum_probs=31.6
Q ss_pred EEEEeCCCceEEEeCCc-eEEEeeccCCccccccccEEEcCCCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCC
Q 016199 147 MIVADAYKGLLKISGNS-TVLLTDEAEGQKFKLTDGVDVADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPV 223 (393)
Q Consensus 147 L~v~~~~~gl~~id~~g-~~~l~~~~~g~~~~~~~~l~~d~dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~ 223 (393)
+..++...+|..+|... ........+. .-..+..+++|+.++ |+.- |+..|.+..||..
T Consensus 1166 lvy~T~~~~iv~~D~r~~~~~w~lk~~~-~hG~vTSi~idp~~~-Wlvi----------------Gts~G~l~lWDLR 1225 (1431)
T KOG1240|consen 1166 LVYATDLSRIVSWDTRMRHDAWRLKNQL-RHGLVTSIVIDPWCN-WLVI----------------GTSRGQLVLWDLR 1225 (1431)
T ss_pred EEEEEeccceEEecchhhhhHHhhhcCc-cccceeEEEecCCce-EEEE----------------ecCCceEEEEEee
Confidence 44444466777777543 1111111111 113467899999887 5442 2445678888864
No 426
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=25.16 E-value=5.9e+02 Score=24.12 Aligned_cols=17 Identities=35% Similarity=0.517 Sum_probs=13.9
Q ss_pred cEEEEEeCCCCeEEEEe
Q 016199 215 GRLLSFDPVTKETKVLV 231 (393)
Q Consensus 215 g~l~~~d~~t~~~~~~~ 231 (393)
..+.+||+.+++.+.+.
T Consensus 168 ~~v~~YDp~t~~W~~~~ 184 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLG 184 (346)
T ss_pred ceEEEEECCCCceeECc
Confidence 46999999998887753
No 427
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.13 E-value=5.6e+02 Score=23.85 Aligned_cols=139 Identities=14% Similarity=0.158 Sum_probs=70.4
Q ss_pred CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc-eEEEeeccCCcccccccc
Q 016199 103 DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS-TVLLTDEAEGQKFKLTDG 181 (393)
Q Consensus 103 ~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g-~~~l~~~~~g~~~~~~~~ 181 (393)
+|+++.+++.+..+......+. ......+++..++.. +.+++|..++.+..+|..- ...+.. ..... +-+..
T Consensus 37 ~G~L~ile~~~~~gi~e~~s~d-~~D~LfdV~Wse~~e----~~~~~a~GDGSLrl~d~~~~s~Pi~~-~kEH~-~EV~S 109 (311)
T KOG0277|consen 37 NGRLFILEVTDPKGIQECQSYD-TEDGLFDVAWSENHE----NQVIAASGDGSLRLFDLTMPSKPIHK-FKEHK-REVYS 109 (311)
T ss_pred CceEEEEecCCCCCeEEEEeee-cccceeEeeecCCCc----ceEEEEecCceEEEeccCCCCcchhH-HHhhh-hheEE
Confidence 5677777775433222233332 234567888876541 1455554333355556321 111110 00000 11223
Q ss_pred EEEcC-CCcEEEEeCCCccchhhheehhcccCCCcEEEEEeCCCC-eEEEEecCccCCCcEEEcCCCCEEEEEeCCCCeE
Q 016199 182 VDVAD-DGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTK-ETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRC 259 (393)
Q Consensus 182 l~~d~-dG~l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~-~~~~~~~~l~~~ngi~~s~dg~~l~v~~~~~~ri 259 (393)
+.... ++..+++. +..+.|-.+++.-+ .+.++........+.+++|.-..++.+.++++.+
T Consensus 110 vdwn~~~r~~~lts-----------------SWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l 172 (311)
T KOG0277|consen 110 VDWNTVRRRIFLTS-----------------SWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTL 172 (311)
T ss_pred eccccccceeEEee-----------------ccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceE
Confidence 33333 34555553 33455666665432 3444443344456677888766788888888888
Q ss_pred EEEEec
Q 016199 260 RKFYIK 265 (393)
Q Consensus 260 ~~~~~~ 265 (393)
..+|++
T Consensus 173 ~lwdvr 178 (311)
T KOG0277|consen 173 RLWDVR 178 (311)
T ss_pred EEEEec
Confidence 888875
No 428
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=23.96 E-value=4.1e+02 Score=27.83 Aligned_cols=76 Identities=16% Similarity=0.302 Sum_probs=0.0
Q ss_pred cccccCceEEecCccCCCceEEEecCCCEEEEEec-CCeEEEEEcCCCCCcceeeeeecCCCceeeeEECCCCCCCCceE
Q 016199 68 ERMLQGSEKVGYGVLKGPEDLLYDAHSKLIYTGCE-DGWIKRVTLNDSPADSLVHNWINTGGRPLGIAFANSDPDADRIT 146 (393)
Q Consensus 68 ~~~l~~~~~l~~g~~~~Pe~ia~d~~g~~L~~~~~-~g~I~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~G~~~~~~~ 146 (393)
....+...++.--.+--|+=||||+..+.+-+++. -.-|..|......-....+.-...+.+|.||+|-.|. .
T Consensus 324 e~~VT~trKV~IPGILvPDliAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqLe~~ERPKGiCFltdk------l 397 (671)
T PF15390_consen 324 ERKVTTTRKVSIPGILVPDLIAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQLESNERPKGICFLTDK------L 397 (671)
T ss_pred ecceEEeeeeccccccccceeeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEcccCCCCceeeEccCC------e
Q ss_pred EEE
Q 016199 147 MIV 149 (393)
Q Consensus 147 L~v 149 (393)
|++
T Consensus 398 LLi 400 (671)
T PF15390_consen 398 LLI 400 (671)
T ss_pred EEE
No 429
>PF05131 Pep3_Vps18: Pep3/Vps18/deep orange family; InterPro: IPR007810 This region is found in a number of proteins identified as being involved in Golgi function and vacuolar sorting. The molecular function of this region is unknown. Proteins containing this domain also contain a C-terminal ring finger domain.
Probab=23.93 E-value=4.3e+02 Score=22.09 Aligned_cols=68 Identities=15% Similarity=0.186 Sum_probs=40.9
Q ss_pred CCCceEEEecCCCEEEEEecCCeEEEEEcCCCCCccee-eeeecCCCceeeeEECCCCCCCCceEEEEEeCCCceEEEeC
Q 016199 83 KGPEDLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLV-HNWINTGGRPLGIAFANSDPDADRITMIVADAYKGLLKISG 161 (393)
Q Consensus 83 ~~Pe~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~-~~~~~~~~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~ 161 (393)
..|.+++..+- ++.. ....+|..++.-.++ ... +.+....+...||+.|+.. +.+|+.+ ...|+.+..
T Consensus 34 ~~p~si~lT~~--H~ll-L~~~~l~~vn~L~~~--vV~e~~~~~~~~~~~gl~~D~~~-----~t~W~ys-~~~I~ei~i 102 (147)
T PF05131_consen 34 SPPLSIALTEF--HLLL-LYSDRLIAVNRLNNK--VVFEESLLETGGKILGLCRDPSS-----NTFWLYS-SNSIFEIVI 102 (147)
T ss_pred CCcceEEeece--eeeE-EeCCEEEEEEecCCc--EEEEEEeccCCcceeeEEEcCCC-----CeEEEEe-CCeeEEEEc
Confidence 34888888753 2322 234467666654333 001 2233446789999999853 2899984 567888754
No 430
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.40 E-value=6.6e+02 Score=23.99 Aligned_cols=42 Identities=12% Similarity=0.125 Sum_probs=27.6
Q ss_pred EEEECC-CCcEEEEeeCCCCCccEEEEEeCCEEEEEecCCCeEEEEe
Q 016199 338 VFIVDL-DGKPIAHYYDPEMSLISSAIKIGDHLYCGSVHHRGILHLD 383 (393)
Q Consensus 338 v~~~d~-~g~~~~~~~d~~~~~~~~~~~~~g~Lyigs~~~~~i~~~~ 383 (393)
++-+.| .-+++..+. ..++++...+|+|.++..+.+...++|
T Consensus 297 LvYi~Pp~~rIVg~fG----aRiTS~e~~~~kili~~nt~pN~g~~d 339 (339)
T PF09910_consen 297 LVYIAPPMVRIVGAFG----ARITSMEKVGGKILIATNTTPNTGAYD 339 (339)
T ss_pred EEEECCCeeeEEeecc----ceEEEeeeeCCEEEEEecCCCCccCCC
Confidence 444444 445554443 467888888999999988777665543
No 431
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=22.57 E-value=9.5e+02 Score=25.57 Aligned_cols=79 Identities=16% Similarity=0.186 Sum_probs=45.6
Q ss_pred CCccccccccEEEcCCCcEEE--EeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCcc-CCCcEEEcCCCCE
Q 016199 172 EGQKFKLTDGVDVADDGMIYF--TDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLY-FANGVVLSPDQTH 248 (393)
Q Consensus 172 ~g~~~~~~~~l~~d~dG~l~~--td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~-~~ngi~~s~dg~~ 248 (393)
++..+...-++.+++|+++.+ -|.. ++..-.|...|..+++.- .+.+. ..-++++..|++.
T Consensus 124 ~g~~f~~Lg~~~~s~D~~~la~s~D~~--------------G~e~y~lr~kdL~tg~~~--~d~i~~~~~~~~Wa~d~~~ 187 (682)
T COG1770 124 EGHDFFSLGAASISPDHNLLAYSVDVL--------------GDEQYTLRFKDLATGEEL--PDEITNTSGSFAWAADGKT 187 (682)
T ss_pred CcccceeeeeeeeCCCCceEEEEEecc--------------cccEEEEEEEeccccccc--chhhcccccceEEecCCCe
Confidence 343444455678888886443 3311 122334666777766542 22232 2567889999998
Q ss_pred EEEEeCCCC----eEEEEEecC
Q 016199 249 LVYCETSMR----RCRKFYIKG 266 (393)
Q Consensus 249 l~v~~~~~~----ri~~~~~~g 266 (393)
+|++....+ ++++..+.+
T Consensus 188 lfYt~~d~~~rp~kv~~h~~gt 209 (682)
T COG1770 188 LFYTRLDENHRPDKVWRHRLGT 209 (682)
T ss_pred EEEEEEcCCCCcceEEEEecCC
Confidence 888775544 566666544
No 432
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=22.40 E-value=2.2e+02 Score=18.24 Aligned_cols=18 Identities=28% Similarity=0.340 Sum_probs=15.0
Q ss_pred EEEEEeCCCceEEEeCCc
Q 016199 146 TMIVADAYKGLLKISGNS 163 (393)
Q Consensus 146 ~L~v~~~~~gl~~id~~g 163 (393)
.+||++...||..+|-..
T Consensus 13 yaYva~~~~Gl~IvDISn 30 (42)
T PF08309_consen 13 YAYVADGNNGLVIVDISN 30 (42)
T ss_pred EEEEEeCCCCEEEEECCC
Confidence 799998889999998543
No 433
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.73 E-value=8.6e+02 Score=24.76 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=27.0
Q ss_pred eEEEecCCCEEEEEecCCeEEEEEcCCCCCcceeeeee-cCCCceeeeEECCCC
Q 016199 87 DLLYDAHSKLIYTGCEDGWIKRVTLNDSPADSLVHNWI-NTGGRPLGIAFANSD 139 (393)
Q Consensus 87 ~ia~d~~g~~L~~~~~~g~I~~~~~~~~~~~~~~~~~~-~~~~~p~gl~~d~~G 139 (393)
++.+|+.++ ..+++..|++.-+...+...+. .-.+. ...|....|.|..|.
T Consensus 27 gvFfDDaNk-qlfavrSggatgvvvkgpndDV-piSfdm~d~G~I~SIkFSlDn 78 (657)
T KOG2377|consen 27 GVFFDDANK-QLFAVRSGGATGVVVKGPNDDV-PISFDMDDKGEIKSIKFSLDN 78 (657)
T ss_pred ceeeccCcc-eEEEEecCCeeEEEEeCCCCCC-CceeeecCCCceeEEEeccCc
Confidence 366887766 4455566656555544322111 12221 113456788888887
No 434
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=21.04 E-value=8.1e+02 Score=24.15 Aligned_cols=54 Identities=15% Similarity=0.089 Sum_probs=39.0
Q ss_pred CCCcEEEEEeCCCCeEEEE----ecCccCCCcEEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199 212 KPNGRLLSFDPVTKETKVL----VSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIK 265 (393)
Q Consensus 212 ~~~g~l~~~d~~t~~~~~~----~~~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~ 265 (393)
.+...++.+.+.++...+- +..-...-+++++|..+.++.+.+..+.|..+|+.
T Consensus 231 Dc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiR 288 (440)
T KOG0302|consen 231 DCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIR 288 (440)
T ss_pred ccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEec
Confidence 4455677777766665432 22233456789999999999999999999999985
No 435
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=20.87 E-value=7.3e+02 Score=23.59 Aligned_cols=113 Identities=12% Similarity=0.134 Sum_probs=59.1
Q ss_pred CceeeeEECCCCCCCCceEEEEEeCCCceEEEeCCc-eE----EEeeccCCccccccccEEEcC--CCcEEEEeCCCccc
Q 016199 128 GRPLGIAFANSDPDADRITMIVADAYKGLLKISGNS-TV----LLTDEAEGQKFKLTDGVDVAD--DGMIYFTDASNKYY 200 (393)
Q Consensus 128 ~~p~gl~~d~~G~~~~~~~L~v~~~~~gl~~id~~g-~~----~l~~~~~g~~~~~~~~l~~d~--dG~l~~td~~~~~~ 200 (393)
++...+.+.|++ .-.++-....|..++.+. .+ ++.....+....+. +-+..| ||+...+
T Consensus 124 g~i~cvew~Pns------~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ft-sg~WspHHdgnqv~t------- 189 (370)
T KOG1007|consen 124 GKINCVEWEPNS------DKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFT-SGAWSPHHDGNQVAT------- 189 (370)
T ss_pred CceeeEEEcCCC------CeeEEeccCceEEEEcccCcchheeecccccccccceec-ccccCCCCccceEEE-------
Confidence 466788899988 555555567777777543 11 11111111011111 113333 5555554
Q ss_pred hhhheehhcccCCCcEEEEEeCCCCeEEEEec--CccCCCcEEEcCCCCEEEEEeCCCCeEEEEEec
Q 016199 201 LREYILDIFEGKPNGRLLSFDPVTKETKVLVS--DLYFANGVVLSPDQTHLVYCETSMRRCRKFYIK 265 (393)
Q Consensus 201 ~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~--~l~~~ngi~~s~dg~~l~v~~~~~~ri~~~~~~ 265 (393)
+..+.+..||..|-..-.-.. .......+.+.|+.+.++++.-..+.|..+|..
T Consensus 190 -----------t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R 245 (370)
T KOG1007|consen 190 -----------TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTR 245 (370)
T ss_pred -----------eCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEecc
Confidence 233456777765422110001 122334566677777788887777888888864
No 436
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=20.51 E-value=2.3e+02 Score=17.71 Aligned_cols=20 Identities=25% Similarity=0.410 Sum_probs=15.4
Q ss_pred CCCcEEEEEeCCCCeEEEEe
Q 016199 212 KPNGRLLSFDPVTKETKVLV 231 (393)
Q Consensus 212 ~~~g~l~~~d~~t~~~~~~~ 231 (393)
.....+++||+.+++.+.+.
T Consensus 25 ~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 25 QPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp SBEEEEEEEETTTTEEEEEE
T ss_pred ceeeeEEEEeCCCCEEEEcC
Confidence 34567999999998887653
No 437
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.25 E-value=3.4e+02 Score=26.87 Aligned_cols=72 Identities=7% Similarity=0.019 Sum_probs=45.8
Q ss_pred cccccEEEcCCCc--EEEEeCCCccchhhheehhcccCCCcEEEEEeCCCCeEEEEecCccCCCcEEEcCCCCEEEEEeC
Q 016199 177 KLTDGVDVADDGM--IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCET 254 (393)
Q Consensus 177 ~~~~~l~~d~dG~--l~~td~~~~~~~~~~~~~~~e~~~~g~l~~~d~~t~~~~~~~~~l~~~ngi~~s~dg~~l~v~~~ 254 (393)
.++.++++.+..+ +-++. -...|-.+|..+.....--.-...+...+++-|+++.+.++-
T Consensus 194 ~~IrdlafSp~~~GLl~~as------------------l~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl 255 (463)
T KOG1645|consen 194 SFIRDLAFSPFNEGLLGLAS------------------LGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGL 255 (463)
T ss_pred hhhhhhccCccccceeeeec------------------cCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEec
Confidence 4567888887543 44442 223466677665443221111244677889888887777777
Q ss_pred CCCeEEEEEecC
Q 016199 255 SMRRCRKFYIKG 266 (393)
Q Consensus 255 ~~~ri~~~~~~g 266 (393)
.+|.|+.||+..
T Consensus 256 ~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 256 QNGMVLVYDMRQ 267 (463)
T ss_pred cCceEEEEEccC
Confidence 899999999864
Done!