Query 016200
Match_columns 393
No_of_seqs 19 out of 21
Neff 1.9
Searched_HMMs 29240
Date Mon Mar 25 09:35:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016200.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016200hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ghg_A Fibrinogen alpha chain; 89.0 0.94 3.2E-05 46.5 7.8 13 319-331 174-186 (562)
2 1t3j_A Mitofusin 1; coiled coi 87.2 0.75 2.6E-05 37.9 4.8 36 297-332 36-75 (96)
3 3dtp_E RLC, myosin regulatory 86.1 0.71 2.4E-05 37.1 4.1 43 223-266 44-86 (196)
4 2k21_A Potassium voltage-gated 81.9 1 3.5E-05 39.4 3.5 32 3-37 49-80 (138)
5 3trt_A Vimentin; cytoskeleton, 76.7 9.9 0.00034 28.2 7.1 21 230-251 7-27 (77)
6 1deq_A Fibrinogen (alpha chain 74.8 25 0.00085 34.9 11.2 59 256-322 101-159 (390)
7 3bbp_D GRIP and coiled-coil do 55.0 5.6 0.00019 31.6 2.0 49 270-319 17-65 (71)
8 3p8c_D Wiskott-aldrich syndrom 48.5 7.7 0.00026 36.6 2.1 15 176-190 166-180 (279)
9 1quu_A Human skeletal muscle a 47.6 1.3E+02 0.0043 25.4 10.5 98 233-330 94-195 (250)
10 1m1j_A Fibrinogen alpha subuni 47.4 1.2E+02 0.0043 30.9 10.6 60 255-322 98-157 (491)
11 1xaw_A Occludin; coiled-coil, 43.7 45 0.0015 28.9 6.0 38 261-299 53-90 (140)
12 2i3s_B Checkpoint serine/threo 42.5 9.1 0.00031 26.8 1.2 13 364-376 17-29 (36)
13 2i3t_B Spindle assembly checkp 38.7 13 0.00043 28.3 1.5 13 364-376 24-36 (54)
14 2f95_B Sensory rhodopsin II tr 38.7 23 0.00078 26.8 3.1 26 21-46 71-96 (163)
15 3gp4_A Transcriptional regulat 38.5 1.6E+02 0.0055 24.0 9.1 66 245-325 51-116 (142)
16 2a26_A Calcyclin-binding prote 36.9 34 0.0012 25.0 3.6 32 286-317 15-47 (50)
17 2ctr_A DNAJ homolog subfamily 35.7 52 0.0018 24.5 4.6 24 232-255 18-41 (88)
18 3ljc_A ATP-dependent protease 32.8 2.2E+02 0.0076 24.6 8.8 62 231-292 134-209 (252)
19 2oxo_A Integrase; DNA-binding 31.5 1.2E+02 0.0039 20.2 5.8 57 233-294 22-81 (103)
20 2cug_A Mkiaa0962 protein; DNAJ 31.5 63 0.0021 24.0 4.4 31 224-254 19-50 (88)
21 1q90_L Cytochrome B6F complex 30.4 40 0.0014 23.1 2.8 26 10-35 1-30 (32)
22 2ctp_A DNAJ homolog subfamily 29.7 71 0.0024 23.0 4.3 23 232-254 18-40 (78)
23 2zt9_E Cytochrome B6-F complex 29.4 45 0.0016 22.8 3.0 26 10-35 1-29 (31)
24 1sjj_A Actinin; 3-helix bundle 28.4 3.6E+02 0.012 26.7 10.4 95 236-330 453-551 (863)
25 2yua_A Williams-beuren syndrom 27.5 62 0.0021 24.6 3.9 34 221-254 16-50 (99)
26 2ys8_A RAB-related GTP-binding 26.3 63 0.0022 24.3 3.7 23 232-254 38-60 (90)
27 3lys_A Prophage PI2 protein 01 26.0 1.3E+02 0.0046 21.6 5.3 58 232-294 26-86 (112)
28 2kj8_A Putative prophage CPS-5 25.9 95 0.0033 22.5 4.5 40 250-294 46-85 (118)
29 4dac_A Computationally designe 25.4 42 0.0014 22.5 2.2 16 305-320 2-17 (28)
30 2kj5_A Phage integrase; GFT PS 24.6 70 0.0024 22.7 3.5 39 251-294 48-86 (116)
31 2i0m_A Phosphate transport sys 23.1 3.1E+02 0.01 22.3 8.1 60 261-324 4-63 (216)
32 3eqx_A FIC domain containing t 22.8 2.8E+02 0.0097 26.0 8.2 113 223-345 223-341 (373)
33 2efl_A Formin-binding protein 22.3 3.5E+02 0.012 23.0 7.9 59 260-319 108-166 (305)
34 3ghg_A Fibrinogen alpha chain; 22.2 2E+02 0.0068 29.9 7.4 59 256-322 98-156 (562)
35 3fx7_A Putative uncharacterize 22.1 3.2E+02 0.011 22.2 8.3 74 254-331 6-80 (94)
36 3gee_A MNME, tRNA modification 21.7 2.2E+02 0.0076 27.3 7.3 82 248-330 132-234 (476)
37 1q08_A Zn(II)-responsive regul 21.7 2.2E+02 0.0074 20.9 5.8 22 245-266 8-29 (99)
38 1hlo_A Protein (transcription 20.9 1.8E+02 0.0061 21.7 5.2 45 237-281 26-77 (80)
39 2bnx_A Diaphanous protein homo 20.7 3E+02 0.01 25.8 7.8 82 259-347 175-279 (386)
40 3ra3_B P2F; coiled coil domain 20.6 67 0.0023 21.5 2.4 18 300-317 10-27 (28)
41 3c7l_A Regulator of G-protein 20.4 1.6E+02 0.0055 23.0 5.1 72 233-339 65-136 (137)
42 3pru_C Phycobilisome 32.1 kDa 20.3 1.2E+02 0.0042 26.6 4.7 49 229-285 15-75 (154)
43 1nkp_B MAX protein, MYC proto- 20.2 2.7E+02 0.0093 20.7 6.3 38 237-274 16-60 (83)
No 1
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=88.98 E-value=0.94 Score=46.54 Aligned_cols=13 Identities=38% Similarity=0.353 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHhc
Q 016200 319 DVYVYNWLQDQLR 331 (393)
Q Consensus 319 Da~VYN~LQqQLK 331 (393)
|..-|+.+|.||.
T Consensus 174 d~~sY~~~QKQLe 186 (562)
T 3ghg_A 174 DLKDYEDQQKQLE 186 (562)
T ss_dssp CHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHH
Confidence 3345999998874
No 2
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=87.20 E-value=0.75 Score=37.86 Aligned_cols=36 Identities=28% Similarity=0.406 Sum_probs=31.9
Q ss_pred chHHHHHHHHHH----HHHHHHhhhhhHHHHHHHHHHhcc
Q 016200 297 SSIDRLRQQIYN----LEKQQRRLEEDVYVYNWLQDQLRL 332 (393)
Q Consensus 297 SS~DRL~qQIyk----LE~EqkRLekDa~VYN~LQqQLKl 332 (393)
+-|.|||+||+. ||.|.++|+++...+..+|..+|.
T Consensus 36 ~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~ 75 (96)
T 1t3j_A 36 TTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKL 75 (96)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 579999999975 788999999999999999988774
No 3
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=86.13 E-value=0.71 Score=37.07 Aligned_cols=43 Identities=7% Similarity=0.079 Sum_probs=30.4
Q ss_pred CCCcccccchhHHHHHHHHHHHHHhhhccCcchHHHHHHHHHhH
Q 016200 223 CLCPLTSMGSATQRKIKELYHQLVQSCESNELTLAQVGEFTKCL 266 (393)
Q Consensus 223 c~yPfTS~~sAtQRRIkeqYDELvran~aK~LTLaQV~eF~NcL 266 (393)
..-.+..++....++|.+.|+.+ -.+....||..++..++..|
T Consensus 44 ~~~~~~~ls~~~~~~l~~~F~~~-D~d~~G~i~~~el~~~l~~l 86 (196)
T 3dtp_E 44 GSNVFAMFTQHQVQEFKEAFQLI-DQDKDGFISKNDIRATFDSL 86 (196)
T ss_dssp CCCSSCSSCTTTHHHHHHHHHHH-CCSCSSBCCHHHHHHHHHTT
T ss_pred chhhhhhCCHHHHHHHHHHHHHH-CCCCCCcCCHHHHHHHHHHh
Confidence 33444555666677888888754 56778899999988877654
No 4
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=81.87 E-value=1 Score=39.37 Aligned_cols=32 Identities=38% Similarity=0.736 Sum_probs=26.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 016200 3 ENNLMLFMLLVISFFFLTIFFTVTLFLTYKKIKRL 37 (393)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (393)
..+-.|++|+|++|| -||++.+.|.|-+-||+
T Consensus 49 ~~~~ylYIL~vmgff---gff~~GImLsYiRSKk~ 80 (138)
T 2k21_A 49 GKLEALYVLMVLGFF---GFFTLGIMLSYIRSKKL 80 (138)
T ss_dssp CSSTTCHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred CCceeehHHHHHHHH---HHHHHHHHHHHhHhhhc
Confidence 345678888888887 47889999999999987
No 5
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=76.72 E-value=9.9 Score=28.17 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=17.1
Q ss_pred cchhHHHHHHHHHHHHHhhhcc
Q 016200 230 MGSATQRKIKELYHQLVQSCES 251 (393)
Q Consensus 230 ~~sAtQRRIkeqYDELvran~a 251 (393)
+++++ +.|..+|++++..|+.
T Consensus 7 L~~il-~eiRaQYE~ia~knr~ 27 (77)
T 3trt_A 7 CTAAM-RDVRQQYESVAAKNLQ 27 (77)
T ss_dssp CHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHhHH
Confidence 34566 8999999999998864
No 6
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=74.79 E-value=25 Score=34.93 Aligned_cols=59 Identities=24% Similarity=0.375 Sum_probs=34.0
Q ss_pred HHHHHHHHHhHHHHHHHHhhhhhhhhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHhhhhhHHH
Q 016200 256 LAQVGEFTKCLAQAREELEDKSETIKRKFSIQKALLSKADRSSIDRLRQQIYNLEKQQRRLEEDVYV 322 (393)
Q Consensus 256 LaQV~eF~NcLVdARnEL~~KSE~iqRkftI~KALLskadRSS~DRL~qQIykLE~EqkRLekDa~V 322 (393)
++|+.+.-|..-+.=.+|.++.+.|||++.-. -. ...+|...|..+-.+.+|||.|+++
T Consensus 101 ~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q------~~--~ir~Lq~~l~~q~~kiqRLE~~Id~ 159 (390)
T 1deq_A 101 FAKANNNDNTFKQINEDLRSRIEILRRKVIEQ------VQ--RINLLQKNVRDQLVDMKRLEVDIDI 159 (390)
T ss_pred HHhhccchHHHHHHHHHHHHHHHHHHHHHHHH------hH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555555555554322 12 5667777788888888888877643
No 7
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=54.99 E-value=5.6 Score=31.56 Aligned_cols=49 Identities=29% Similarity=0.365 Sum_probs=31.8
Q ss_pred HHHHhhhhhhhhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHhhhhh
Q 016200 270 REELEDKSETIKRKFSIQKALLSKADRSSIDRLRQQIYNLEKQQRRLEED 319 (393)
Q Consensus 270 RnEL~~KSE~iqRkftI~KALLskadRSS~DRL~qQIykLE~EqkRLekD 319 (393)
..+|.++-.+++++..=..+||.-+. +.-.||-+|+.-|..|..||+.+
T Consensus 17 ~eel~~~L~~~~k~~~Hl~~LL~EsE-atnarL~eq~~lLK~EIRRlERn 65 (71)
T 3bbp_D 17 KEELVQKLSSTTKSADHLNGLLRETE-ATNAILMEQIKLLKSEIRRLERN 65 (71)
T ss_dssp ------------CTTSHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHhh
Confidence 57899999999999999999997643 45679999999999999999875
No 8
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=48.53 E-value=7.7 Score=36.62 Aligned_cols=15 Identities=40% Similarity=0.751 Sum_probs=6.9
Q ss_pred hhHHHHHHHHHhhhh
Q 016200 176 LEEEEEERVKKKKKK 190 (393)
Q Consensus 176 ~~~~eeqr~K~kkkr 190 (393)
|.+-|+.+.+|||+|
T Consensus 166 l~d~k~~~k~krk~~ 180 (279)
T 3p8c_D 166 LQDTEDKRKEKRKQK 180 (279)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcc
Confidence 344445554444444
No 9
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=47.56 E-value=1.3e+02 Score=25.40 Aligned_cols=98 Identities=10% Similarity=0.081 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHHHHhhhccCcchHHHHHHHHHhHHHHHHHHhhhhhhhhhHHHHHHHHhhcCC----cchHHHHHHHHHH
Q 016200 233 ATQRKIKELYHQLVQSCESNELTLAQVGEFTKCLAQAREELEDKSETIKRKFSIQKALLSKAD----RSSIDRLRQQIYN 308 (393)
Q Consensus 233 AtQRRIkeqYDELvran~aK~LTLaQV~eF~NcLVdARnEL~~KSE~iqRkftI~KALLskad----RSS~DRL~qQIyk 308 (393)
.-...|.++|+.|......++-.|.+...+...+-.+|.....+.+.+.--+.=+...|...+ -.+...|.++...
T Consensus 94 ~r~~~l~~~W~~L~~~~~~R~~~L~~~l~~~~~~d~l~~qF~~~a~~~~~Wl~~~e~~l~~~~~~~d~e~v~~ll~~h~~ 173 (250)
T 1quu_A 94 DRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQ 173 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCCCSTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHH
Confidence 345678999999999999999999998888887778888888888888777777777777654 3556677777777
Q ss_pred HHHHHHhhhhhHHHHHHHHHHh
Q 016200 309 LEKQQRRLEEDVYVYNWLQDQL 330 (393)
Q Consensus 309 LE~EqkRLekDa~VYN~LQqQL 330 (393)
++.+...++........|.+++
T Consensus 174 ~~~~l~~~~~~~~~i~~l~~~~ 195 (250)
T 1quu_A 174 FKATLPEADGERQSIMAIQNEV 195 (250)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7666666666666665565554
No 10
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=47.42 E-value=1.2e+02 Score=30.89 Aligned_cols=60 Identities=22% Similarity=0.321 Sum_probs=36.9
Q ss_pred hHHHHHHHHHhHHHHHHHHhhhhhhhhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHhhhhhHHH
Q 016200 255 TLAQVGEFTKCLAQAREELEDKSETIKRKFSIQKALLSKADRSSIDRLRQQIYNLEKQQRRLEEDVYV 322 (393)
Q Consensus 255 TLaQV~eF~NcLVdARnEL~~KSE~iqRkftI~KALLskadRSS~DRL~qQIykLE~EqkRLekDa~V 322 (393)
+++|+.+.-|-.-+.=.+|..+.+.|+|++.-.= ..+.=|+..|..+-.+.+|||.|+++
T Consensus 98 ~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi--------~~IrvLq~~l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 98 GLEGAQQLDENYGHVSTELRRRIVTLKQRVATQV--------NRIKALQNSIQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555566666666666543221 34445677777888888888888875
No 11
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=43.65 E-value=45 Score=28.90 Aligned_cols=38 Identities=18% Similarity=0.230 Sum_probs=29.4
Q ss_pred HHHHhHHHHHHHHhhhhhhhhhHHHHHHHHhhcCCcchH
Q 016200 261 EFTKCLAQAREELEDKSETIKRKFSIQKALLSKADRSSI 299 (393)
Q Consensus 261 eF~NcLVdARnEL~~KSE~iqRkftI~KALLskadRSS~ 299 (393)
+|-..+-+-| +|+.+-+.|.++|+-..++|...++.|-
T Consensus 53 ~F~~dy~EYk-~Lhaev~~v~~~F~~Ld~~L~~l~~~s~ 90 (140)
T 1xaw_A 53 NFDTGLQEYK-SLQSVLDEINKELSRLDKELDDYREESE 90 (140)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 3444444443 6899999999999999999999887664
No 12
>2i3s_B Checkpoint serine/threonine-protein kinase; WD40 protein, beta-propeller, glebs motif, mitotic spindle checkpoint, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=42.54 E-value=9.1 Score=26.84 Aligned_cols=13 Identities=31% Similarity=0.273 Sum_probs=10.8
Q ss_pred cccccHHHHHhhh
Q 016200 364 FADISFEELLAQE 376 (393)
Q Consensus 364 ~adiSFEELLAqE 376 (393)
-.|+|||||||--
T Consensus 17 ~~E~s~eEllA~s 29 (36)
T 2i3s_B 17 DEEFNTEEILAMI 29 (36)
T ss_dssp SCCCCHHHHHHHH
T ss_pred CcEecHHHHHHHh
Confidence 4689999999954
No 13
>2i3t_B Spindle assembly checkpoint component; WD40 protein, beta propeller, mitotic spindle checkpoint, cell cycle; 2.80A {Saccharomyces cerevisiae}
Probab=38.75 E-value=13 Score=28.32 Aligned_cols=13 Identities=38% Similarity=0.442 Sum_probs=10.3
Q ss_pred cccccHHHHHhhh
Q 016200 364 FADISFEELLAQE 376 (393)
Q Consensus 364 ~adiSFEELLAqE 376 (393)
-.|+|||||||--
T Consensus 24 ~~E~sfeEllA~s 36 (54)
T 2i3t_B 24 RLEFSLEEVLAIS 36 (54)
T ss_dssp -CBCCHHHHHHHT
T ss_pred cceeeHHHHHHHh
Confidence 4589999999963
No 14
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=38.68 E-value=23 Score=26.78 Aligned_cols=26 Identities=19% Similarity=-0.018 Sum_probs=2.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhHhhh
Q 016200 21 IFFTVTLFLTYKKIKRLQELENYANV 46 (393)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (393)
+.+.+.+++...-.+.|..|...+.-
T Consensus 71 ~~~~~~~~~~~~i~~pl~~l~~~~~~ 96 (163)
T 2f95_B 71 NLGLVAATLGGDTAASLSTLAAKASR 96 (163)
T ss_dssp HHHHHC--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444445667776655543
No 15
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=38.52 E-value=1.6e+02 Score=23.98 Aligned_cols=66 Identities=14% Similarity=0.244 Sum_probs=38.8
Q ss_pred HHhhhccCcchHHHHHHHHHhHHHHHHHHhhhhhhhhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 016200 245 LVQSCESNELTLAQVGEFTKCLAQAREELEDKSETIKRKFSIQKALLSKADRSSIDRLRQQIYNLEKQQRRLEEDVYVYN 324 (393)
Q Consensus 245 Lvran~aK~LTLaQV~eF~NcLVdARnEL~~KSE~iqRkftI~KALLskadRSS~DRL~qQIykLE~EqkRLekDa~VYN 324 (393)
++++-..-+++|+++.+++.++-+.. .+ +.-...+|. .-.+.|.++|..|+...+.|+.-...|.
T Consensus 51 ~I~~lr~~G~sL~eIk~~l~~~~~~~-------~~----~~~~~~~L~----~~~~~l~~~i~~L~~~~~~L~~~i~~~~ 115 (142)
T 3gp4_A 51 FTRQMRRAGLSIEALIDYLALFREGE-------HT----LEARAELLK----KQRIELKNRIDVMQEALDRLDFKIDNYD 115 (142)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHCG-------GG----HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhccC-------CC----HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555678999999999987642211 11 111223332 2345667777777777777766666554
Q ss_pred H
Q 016200 325 W 325 (393)
Q Consensus 325 ~ 325 (393)
.
T Consensus 116 ~ 116 (142)
T 3gp4_A 116 T 116 (142)
T ss_dssp H
T ss_pred H
Confidence 3
No 16
>2a26_A Calcyclin-binding protein; helical hairpin, dimerization, apoptosis; HET: CXS; 1.20A {Homo sapiens} SCOP: a.2.16.1
Probab=36.92 E-value=34 Score=24.95 Aligned_cols=32 Identities=25% Similarity=0.283 Sum_probs=26.4
Q ss_pred HHHHHhhcCCcchHH-HHHHHHHHHHHHHHhhh
Q 016200 286 IQKALLSKADRSSID-RLRQQIYNLEKQQRRLE 317 (393)
Q Consensus 286 I~KALLskadRSS~D-RL~qQIykLE~EqkRLe 317 (393)
=.++||+.|-|+++. =|-.+|.+||.+.+.++
T Consensus 15 El~~Ll~~AkR~rVk~~L~~ei~~lE~ei~~~~ 47 (50)
T 2a26_A 15 EVKVLLEKATRKRVRDALTAEKSKIETEIKNKM 47 (50)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhh
Confidence 357899999999987 45889999999888653
No 17
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.70 E-value=52 Score=24.48 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHhhhccCcch
Q 016200 232 SATQRKIKELYHQLVQSCESNELT 255 (393)
Q Consensus 232 sAtQRRIkeqYDELvran~aK~LT 255 (393)
.|++..|+.+|.+|++...--+..
T Consensus 18 ~as~~eIk~ayr~l~~~~HPDk~~ 41 (88)
T 2ctr_A 18 SASERQIKKAFHKLAMKYHPDKNK 41 (88)
T ss_dssp TCCHHHHHHHHHHHHHHTCTTTCC
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCC
Confidence 588999999999999998755543
No 18
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=32.82 E-value=2.2e+02 Score=24.60 Aligned_cols=62 Identities=8% Similarity=0.026 Sum_probs=38.2
Q ss_pred chhHHHHHHHHHHHHHhhhccCc----------chHHHHHHHHHhH----HHHHHHHhhhhhhhhhHHHHHHHHhh
Q 016200 231 GSATQRKIKELYHQLVQSCESNE----------LTLAQVGEFTKCL----AQAREELEDKSETIKRKFSIQKALLS 292 (393)
Q Consensus 231 ~sAtQRRIkeqYDELvran~aK~----------LTLaQV~eF~NcL----VdARnEL~~KSE~iqRkftI~KALLs 292 (393)
..|+-|.+++.+.+++..+..-. -+...+..|+-.+ ++.|.+|++-.+...|--.+...|-.
T Consensus 134 ~~al~~~l~~~~~~~~~l~~~~~~e~~~~~~~~~dp~~Lad~ia~~l~l~~~eKQ~LLe~~d~~~Rl~~l~~lL~~ 209 (252)
T 3ljc_A 134 QEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMES 209 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSCHHHHHHTTSCCCHHHHHHHHHHTSCCCHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHccCCHHHHHHHHHHhCCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 56788999999999887654211 1223333333222 34577888877777777666665543
No 19
>2oxo_A Integrase; DNA-binding protein, four-helix bundle, DNA binding protein; 2.00A {Unidentified phage}
Probab=31.45 E-value=1.2e+02 Score=20.23 Aligned_cols=57 Identities=11% Similarity=0.059 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHHhhh---ccCcchHHHHHHHHHhHHHHHHHHhhhhhhhhhHHHHHHHHhhcC
Q 016200 233 ATQRKIKELYHQLVQSC---ESNELTLAQVGEFTKCLAQAREELEDKSETIKRKFSIQKALLSKA 294 (393)
Q Consensus 233 AtQRRIkeqYDELvran---~aK~LTLaQV~eF~NcLVdARnEL~~KSE~iqRkftI~KALLska 294 (393)
.+.+.....+..+...- .-..+|..+|.+|.+.|... ....++++.+++.++++..|
T Consensus 22 ~T~~~y~~~~~~~~~~~g~~~l~~it~~~i~~~~~~l~~~-----~~~~t~~~~~~~l~~~~~~a 81 (103)
T 2oxo_A 22 KTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDE-----GKAASAKLIRSTLSDAFREA 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHSCSCBGGGCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCcCchhhCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHH
Confidence 34444444444443322 23468899999999887532 25678889999998888764
No 20
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=31.45 E-value=63 Score=24.03 Aligned_cols=31 Identities=19% Similarity=0.312 Sum_probs=22.5
Q ss_pred CCccccc-chhHHHHHHHHHHHHHhhhccCcc
Q 016200 224 LCPLTSM-GSATQRKIKELYHQLVQSCESNEL 254 (393)
Q Consensus 224 ~yPfTS~-~sAtQRRIkeqYDELvran~aK~L 254 (393)
.|=++-+ -.|++..|+.+|..|++...--+.
T Consensus 19 ~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~ 50 (88)
T 2cug_A 19 PYRVLGVSRTASQADIKKAYKKLAREWHPDKN 50 (88)
T ss_dssp HHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTC
T ss_pred HHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 3433333 468999999999999998775443
No 21
>1q90_L Cytochrome B6F complex subunit PETL; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.24.1
Probab=30.43 E-value=40 Score=23.12 Aligned_cols=26 Identities=35% Similarity=0.595 Sum_probs=15.0
Q ss_pred HHHHHHHHH-HH--HHHHHHHHHhHHH-HH
Q 016200 10 MLLVISFFF-LT--IFFTVTLFLTYKK-IK 35 (393)
Q Consensus 10 ~~~~~~~~~-~~--~~~~~~~~~~~~~-~~ 35 (393)
|+.+||+|- |. ..+|..+|+...| ||
T Consensus 1 M~tiisYf~fL~~al~~t~~lfiGL~K~Ik 30 (32)
T 1q90_L 1 MLTITSYVGLLIGALVFTLGIYLGLLKVVK 30 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 455666553 33 3455667777766 65
No 22
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.69 E-value=71 Score=23.00 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHHhhhccCcc
Q 016200 232 SATQRKIKELYHQLVQSCESNEL 254 (393)
Q Consensus 232 sAtQRRIkeqYDELvran~aK~L 254 (393)
.|.+..|+.+|..|++...--+.
T Consensus 18 ~as~~eIk~ayr~l~~~~HPDk~ 40 (78)
T 2ctp_A 18 GASDEDLKKAYRRLALKFHPDKN 40 (78)
T ss_dssp TCCHHHHHHHHHHHHTTSCTTTC
T ss_pred CCCHHHHHHHHHHHHHHHCcCCC
Confidence 57899999999999998875444
No 23
>2zt9_E Cytochrome B6-F complex subunit 6; photosynthesis, heme B,2Fe-2S protei cytochrome F; HET: HEM UMQ CLA OPC SQD BCR; 3.00A {Nostoc SP}
Probab=29.44 E-value=45 Score=22.79 Aligned_cols=26 Identities=15% Similarity=0.322 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHH-HH--HHHHHhHHHHH
Q 016200 10 MLLVISFFFLTIF-FT--VTLFLTYKKIK 35 (393)
Q Consensus 10 ~~~~~~~~~~~~~-~~--~~~~~~~~~~~ 35 (393)
|..+|+++.+..+ |. +.||+-.|-||
T Consensus 1 m~~~i~y~~~l~~~~~iA~GL~fGLrsiK 29 (31)
T 2zt9_E 1 MLAIVAYIGFLALFTGIAAGLLFGLRSAK 29 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666544443 33 45677667665
No 24
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=28.43 E-value=3.6e+02 Score=26.71 Aligned_cols=95 Identities=9% Similarity=0.077 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhhhccCcchHHHHHHHHHhHHHHHHHHhhhhhhhhhHHHHHHHHhhcCC----cchHHHHHHHHHHHHH
Q 016200 236 RKIKELYHQLVQSCESNELTLAQVGEFTKCLAQAREELEDKSETIKRKFSIQKALLSKAD----RSSIDRLRQQIYNLEK 311 (393)
Q Consensus 236 RRIkeqYDELvran~aK~LTLaQV~eF~NcLVdARnEL~~KSE~iqRkftI~KALLskad----RSS~DRL~qQIykLE~ 311 (393)
..|.++++.|......++-.|.+-.++...+-+.+.+..++.+.+.--+.-+...|+..+ -.+.+.|.+....++.
T Consensus 453 ~~l~~~W~~L~~~~~~R~~~L~~~l~~~q~~~~l~~~f~~~a~~~~~Wl~~~e~~l~~~~~g~dl~~ve~ll~kh~~~~~ 532 (863)
T 1sjj_A 453 QKICDQWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQDTFIVHTIEEIQGLTTAHEQFKA 532 (863)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHCCCCCSSSGGGHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhccHHHHHHHHHHHHHHHh
Confidence 345556666666666666666655555544444444555555555444444555555543 2444444444444444
Q ss_pred HHHhhhhhHHHHHHHHHHh
Q 016200 312 QQRRLEEDVYVYNWLQDQL 330 (393)
Q Consensus 312 EqkRLekDa~VYN~LQqQL 330 (393)
+....+..+.-.+.|.++|
T Consensus 533 ~l~~~~~~~~~~~~l~~~l 551 (863)
T 1sjj_A 533 TLPDADKERQAILGIHNEV 551 (863)
T ss_dssp THHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444454444
No 25
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.47 E-value=62 Score=24.63 Aligned_cols=34 Identities=24% Similarity=0.216 Sum_probs=25.0
Q ss_pred CCCCCccccc-chhHHHHHHHHHHHHHhhhccCcc
Q 016200 221 LGCLCPLTSM-GSATQRKIKELYHQLVQSCESNEL 254 (393)
Q Consensus 221 ~~c~yPfTS~-~sAtQRRIkeqYDELvran~aK~L 254 (393)
....|-++-+ -.|++..|+.+|..|++...--+.
T Consensus 16 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~ 50 (99)
T 2yua_A 16 RTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRN 50 (99)
T ss_dssp SSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTC
T ss_pred ccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 3455655544 468999999999999988775443
No 26
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.29 E-value=63 Score=24.34 Aligned_cols=23 Identities=13% Similarity=0.323 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHhhhccCcc
Q 016200 232 SATQRKIKELYHQLVQSCESNEL 254 (393)
Q Consensus 232 sAtQRRIkeqYDELvran~aK~L 254 (393)
.|++..|+.+|..|++...--+.
T Consensus 38 ~as~~eIk~aYr~la~~~HPDk~ 60 (90)
T 2ys8_A 38 GASRDEVNKAYRKLAVLLHPDKC 60 (90)
T ss_dssp TCCHHHHHHHHHHHHHHHCTTTC
T ss_pred CCCHHHHHHHHHHHHHHHCcCCC
Confidence 67889999999999998875554
No 27
>3lys_A Prophage PI2 protein 01, integrase; helical N-terminal domain, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactococcus lactis}
Probab=26.03 E-value=1.3e+02 Score=21.57 Aligned_cols=58 Identities=12% Similarity=0.033 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHHHHHhhh---ccCcchHHHHHHHHHhHHHHHHHHhhhhhhhhhHHHHHHHHhhcC
Q 016200 232 SATQRKIKELYHQLVQSC---ESNELTLAQVGEFTKCLAQAREELEDKSETIKRKFSIQKALLSKA 294 (393)
Q Consensus 232 sAtQRRIkeqYDELvran---~aK~LTLaQV~eF~NcLVdARnEL~~KSE~iqRkftI~KALLska 294 (393)
..|.+.....+..+...- .-..+|..+|.+|.+.|.+. ....+++|.+++.++++..|
T Consensus 26 ~~T~~~y~~~~~~i~p~~g~~~l~~It~~~i~~~~~~l~~~-----~s~~t~~~~~~~l~~i~~~A 86 (112)
T 3lys_A 26 EMTYKGYEQTLKYLKTYMPNVLISEITASSYQRALNKFAET-----HAKASTKGFHTRVRASIQCL 86 (112)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCBTTTCCHHHHHHHHHHHHTT-----SCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHhCCHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHH
Confidence 344444444444443332 34678999999999987421 24577888888888887654
No 28
>2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA integration, DNA recombination, structural genomics, protein structure initiative; NMR {Escherichia coli k-12}
Probab=25.93 E-value=95 Score=22.51 Aligned_cols=40 Identities=13% Similarity=0.081 Sum_probs=30.0
Q ss_pred ccCcchHHHHHHHHHhHHHHHHHHhhhhhhhhhHHHHHHHHhhcC
Q 016200 250 ESNELTLAQVGEFTKCLAQAREELEDKSETIKRKFSIQKALLSKA 294 (393)
Q Consensus 250 ~aK~LTLaQV~eF~NcLVdARnEL~~KSE~iqRkftI~KALLska 294 (393)
.-..+|..+|.+|.+.|.+. ....+++|.+++.++++.-|
T Consensus 46 ~l~~It~~~i~~~~~~l~~~-----~s~~t~~~~~~~l~~~~~~A 85 (118)
T 2kj8_A 46 EIQDIEPMQLLEVIRRFEDR-----GAMERANKARRRCGEVFRYA 85 (118)
T ss_dssp BTTSCCHHHHHHHHHHHHTT-----TCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHH
Confidence 35678999999998877532 14578888888888887654
No 29
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=25.36 E-value=42 Score=22.47 Aligned_cols=16 Identities=38% Similarity=0.858 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhhhhhH
Q 016200 305 QIYNLEKQQRRLEEDV 320 (393)
Q Consensus 305 QIykLE~EqkRLekDa 320 (393)
.+|||....|||+|.+
T Consensus 2 evykldanvkrlekev 17 (28)
T 4dac_A 2 EVYKLDANVKRLEKEV 17 (28)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred ceeeccccHHHHHHHH
Confidence 3677777777777765
No 30
>2kj5_A Phage integrase; GFT PSI-2, NESG, structural genomics, structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=24.57 E-value=70 Score=22.70 Aligned_cols=39 Identities=8% Similarity=0.170 Sum_probs=27.1
Q ss_pred cCcchHHHHHHHHHhHHHHHHHHhhhhhhhhhHHHHHHHHhhcC
Q 016200 251 SNELTLAQVGEFTKCLAQAREELEDKSETIKRKFSIQKALLSKA 294 (393)
Q Consensus 251 aK~LTLaQV~eF~NcLVdARnEL~~KSE~iqRkftI~KALLska 294 (393)
-..+|..+|.+|.+.|.+. ....++.|.+++.++++.-|
T Consensus 48 l~~it~~~i~~~~~~l~~~-----~s~~t~~~~~~~l~~~~~~A 86 (116)
T 2kj5_A 48 VEDVKPRHIDDVLKAVMKR-----GAPSIANDTLRWLKRMFNYA 86 (116)
T ss_dssp SSSCCHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHHHc-----cChHHHHHHHHHHHHHHHHH
Confidence 4567888888888877542 15567788888777776543
No 31
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, PROT structure initiative; 2.40A {Streptococcus pneumoniae}
Probab=23.08 E-value=3.1e+02 Score=22.34 Aligned_cols=60 Identities=12% Similarity=0.118 Sum_probs=44.8
Q ss_pred HHHHhHHHHHHHHhhhhhhhhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 016200 261 EFTKCLAQAREELEDKSETIKRKFSIQKALLSKADRSSIDRLRQQIYNLEKQQRRLEEDVYVYN 324 (393)
Q Consensus 261 eF~NcLVdARnEL~~KSE~iqRkftI~KALLskadRSS~DRL~qQIykLE~EqkRLekDa~VYN 324 (393)
.|-.-|..++.++..-++.+...+.-.-..|.+.|. .+.++|...|.+..+|+.+..-|=
T Consensus 4 ~~~~~l~~l~~~l~~M~~~v~~~l~~a~~al~~~d~----~~a~~v~~~d~~iD~l~~~I~~~~ 63 (216)
T 2i0m_A 4 QFDLELHELEQSFLGLGQLVLETASKALLALASKDK----EMAELIINKDHAINQGQSAIELTC 63 (216)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH----HHHHHHHHhHHHHHHHHHHHHHHH
Confidence 466778888999999888888888776666666553 567778888888888877765553
No 32
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=22.81 E-value=2.8e+02 Score=25.97 Aligned_cols=113 Identities=11% Similarity=0.055 Sum_probs=66.2
Q ss_pred CCCcccccchhHHHHHHHHHHHHHhhhccCcchHHHHHHHHHhHHHHHHHHhhhhhhhhhHHHHHHHHhhcC-CcchHHH
Q 016200 223 CLCPLTSMGSATQRKIKELYHQLVQSCESNELTLAQVGEFTKCLAQAREELEDKSETIKRKFSIQKALLSKA-DRSSIDR 301 (393)
Q Consensus 223 c~yPfTS~~sAtQRRIkeqYDELvran~aK~LTLaQV~eF~NcLVdARnEL~~KSE~iqRkftI~KALLska-dRSS~DR 301 (393)
...|+.+++..+.+.-.+-|+.|..+.....+| .=|.=|+.|+.++=.+..++.+.++....-.+..+... .+..-.+
T Consensus 223 ~~~~~~~ls~~i~~~~~~Yy~~L~~~~~~~d~~-~~i~f~l~~i~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~ 301 (373)
T 3eqx_A 223 LSAPILYLSRYIVAHKQDYYRLLLNVTTQQEWQ-PWIIFILNAVEQTAKWTTHKIAAARELIAHTTEYVRQQLPKIYSHE 301 (373)
T ss_dssp CSSSCCCTHHHHHHTHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCHH
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHhhccCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 457889999999999999999998886544332 33555778888887777777766655444333333221 1221223
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHhccCHH-----HHHHHHhhhh
Q 016200 302 LRQQIYNLEKQQRRLEEDVYVYNWLQDQLRLSPA-----CKKMFEVCAD 345 (393)
Q Consensus 302 L~qQIykLE~EqkRLekDa~VYN~LQqQLKlSpA-----YKkMlE~ga~ 345 (393)
|.+-+ .++-. .--..+++.++.|.+ -+.++|.|--
T Consensus 302 ll~~l----~~~p~-----~t~~~~~~~~~~S~~TA~r~L~~L~e~GiL 341 (373)
T 3eqx_A 302 LVQVI----FEQPY-----CRIQNLVESGLAKRQTASVYLKQLCDIGVL 341 (373)
T ss_dssp HHHHH----HHCSE-----EEHHHHHHTSSSCHHHHHHHHHHHHHTTSC
T ss_pred HHHHH----HHCCC-----ccHHHHHHHhCcCHHHHHHHHHHHHHCCcE
Confidence 32222 12211 123456677777753 3556666643
No 33
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=22.26 E-value=3.5e+02 Score=22.96 Aligned_cols=59 Identities=10% Similarity=0.161 Sum_probs=30.6
Q ss_pred HHHHHhHHHHHHHHhhhhhhhhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHhhhhh
Q 016200 260 GEFTKCLAQAREELEDKSETIKRKFSIQKALLSKADRSSIDRLRQQIYNLEKQQRRLEED 319 (393)
Q Consensus 260 ~eF~NcLVdARnEL~~KSE~iqRkftI~KALLskadRSS~DRL~qQIykLE~EqkRLekD 319 (393)
..|..-+-..|..+.+-...++....-.-.-|.++ |..|+..|..+.+++...++.++|
T Consensus 108 ~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~Ka-K~~Y~~~~~e~e~a~~~~~~~~~~ 166 (305)
T 2efl_A 108 ARYVQELKQERKSNFHDGRKAQQHIETCWKQLESS-KRRFERDCKEADRAQQYFEKMDAD 166 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444333344444433333333333333333333 567888888888877766655544
No 34
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=22.22 E-value=2e+02 Score=29.88 Aligned_cols=59 Identities=20% Similarity=0.308 Sum_probs=30.7
Q ss_pred HHHHHHHHHhHHHHHHHHhhhhhhhhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHhhhhhHHH
Q 016200 256 LAQVGEFTKCLAQAREELEDKSETIKRKFSIQKALLSKADRSSIDRLRQQIYNLEKQQRRLEEDVYV 322 (393)
Q Consensus 256 LaQV~eF~NcLVdARnEL~~KSE~iqRkftI~KALLskadRSS~DRL~qQIykLE~EqkRLekDa~V 322 (393)
+.|+.+.-|..-+.=.+|.++.+.|++++.-.. +.+.=|...|..+-.+.+|||.|++|
T Consensus 98 q~q~~dNdNtynE~S~ELRRrIqyLKekVdnQl--------snIrvLQsnLedq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 98 FSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKV--------QHIQLLQKNVRAQLVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhccchhHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334334333333344444444444433322 34444666667777777788888876
No 35
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=22.06 E-value=3.2e+02 Score=22.23 Aligned_cols=74 Identities=20% Similarity=0.394 Sum_probs=55.0
Q ss_pred chHHHHHHHHHhHHHHHHHHhhhhhhhhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHhc
Q 016200 254 LTLAQVGEFTKCLAQAREELEDKSETIKRKFSIQKALLSKADRSSIDRLRQQIYNLEKQQRRLEEDVYVY-NWLQDQLR 331 (393)
Q Consensus 254 LTLaQV~eF~NcLVdARnEL~~KSE~iqRkftI~KALLskadRSS~DRL~qQIykLE~EqkRLekDa~VY-N~LQqQLK 331 (393)
.+..+|.+|++.|-.-++.|+..-..+.-.|.= | +.=.=.-+++.-++..+|....++..+++.=| .||.++++
T Consensus 6 ~dpeElr~Fa~~L~~F~d~Lq~~~~~L~~~f~~---L-~sWqDqkr~kFee~fe~l~s~l~~f~e~a~e~vp~L~~~i~ 80 (94)
T 3fx7_A 6 MDTEEVREFVGHLERFKELLREEVNSLSNHFHN---L-ESWRDARRDKFSEVLDNLKSTFNEFDEAAQEQIAWLKERIR 80 (94)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---C-CSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---c-chHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHH
Confidence 357899999999999999999999888877753 3 31122345556667777778888888888766 47777776
No 36
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=21.75 E-value=2.2e+02 Score=27.33 Aligned_cols=82 Identities=18% Similarity=0.189 Sum_probs=51.3
Q ss_pred hhccCcchHHHHHHHHHhHHHHHHHHhhhhhhhhhH-------HHHHHHHhhc----------C----CcchHHHHHHHH
Q 016200 248 SCESNELTLAQVGEFTKCLAQAREELEDKSETIKRK-------FSIQKALLSK----------A----DRSSIDRLRQQI 306 (393)
Q Consensus 248 an~aK~LTLaQV~eF~NcLVdARnEL~~KSE~iqRk-------ftI~KALLsk----------a----dRSS~DRL~qQI 306 (393)
+--+.+++|.|+.. +.-||+|+++.+.+...-+-+ -.+++.|+.- + +-...+++.++|
T Consensus 132 Aflngk~dL~qaEa-v~dli~a~t~~~~~~a~~~l~G~ls~~i~~lr~~L~~~~a~iea~iDf~eedi~~~~~~~l~~~i 210 (476)
T 3gee_A 132 AFLNGRIDLLQAEA-IGEMIHARTESAYRTAVSQMKGDLSVRLGGLREQLIRSCALIELELDFSEEDVEFQSRDELTMQI 210 (476)
T ss_dssp HHHTTSSCHHHHHH-HHHHHHCCSHHHHHHHHHHHHTHHHHHHHHHHTHHHHHHHTTTTCSSCCSSCCSSSCHHHHHHHH
T ss_pred hhccCcCcHHHHHH-HHHHHhCCCHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHhheecCCCcccccchhHHHHHHHH
Confidence 34456889999755 456888877776665543322 2344444331 1 123455788999
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHh
Q 016200 307 YNLEKQQRRLEEDVYVYNWLQDQL 330 (393)
Q Consensus 307 ykLE~EqkRLekDa~VYN~LQqQL 330 (393)
.+|..+.+++.+....-..+.+.+
T Consensus 211 ~~l~~~l~~~~~~~~~~~~~r~~~ 234 (476)
T 3gee_A 211 ETLRSEVNRLIDSYQHGRIVSEGV 234 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCE
T ss_pred HHHHHHHHHHHHHHHhhHhhcCCC
Confidence 999998888887766655555544
No 37
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=21.70 E-value=2.2e+02 Score=20.91 Aligned_cols=22 Identities=9% Similarity=0.223 Sum_probs=17.2
Q ss_pred HHhhhccCcchHHHHHHHHHhH
Q 016200 245 LVQSCESNELTLAQVGEFTKCL 266 (393)
Q Consensus 245 Lvran~aK~LTLaQV~eF~NcL 266 (393)
++++-++=+++|+++.+|+.+.
T Consensus 8 ~I~~lr~lGfsL~eIk~~l~~~ 29 (99)
T 1q08_A 8 FIRHARQLGFSLESIRELLSIR 29 (99)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHH
Confidence 4566667789999999998754
No 38
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=20.89 E-value=1.8e+02 Score=21.70 Aligned_cols=45 Identities=20% Similarity=0.371 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhhcc-------CcchHHHHHHHHHhHHHHHHHHhhhhhhhh
Q 016200 237 KIKELYHQLVQSCES-------NELTLAQVGEFTKCLAQAREELEDKSETIK 281 (393)
Q Consensus 237 RIkeqYDELvran~a-------K~LTLaQV~eF~NcLVdARnEL~~KSE~iq 281 (393)
.|+..|++|-.+.-. |.-+|....+++..|-....+|.++-+.++
T Consensus 26 ~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 26 HIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378899888776542 233444445555555555555555544444
No 39
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=20.74 E-value=3e+02 Score=25.78 Aligned_cols=82 Identities=12% Similarity=0.227 Sum_probs=50.5
Q ss_pred HHHHHHhHHHHHHHHhhhhhhhhhHHHHHHHHhh--------cCCcchHHHHHHHHHHHHHHHH--------h-------
Q 016200 259 VGEFTKCLAQAREELEDKSETIKRKFSIQKALLS--------KADRSSIDRLRQQIYNLEKQQR--------R------- 315 (393)
Q Consensus 259 V~eF~NcLVdARnEL~~KSE~iqRkftI~KALLs--------kadRSS~DRL~qQIykLE~Eqk--------R------- 315 (393)
.-.|+|+||.. .+.++-+..|+.-+.. +-+...++.|-.||...|.... |
T Consensus 175 ~m~lIN~lv~~-------~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Qi~~fe~~~~eD~~el~~r~~~i~~d 247 (386)
T 2bnx_A 175 CLQLINALITP-------AEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFDLKGRLDDIRME 247 (386)
T ss_dssp HHHHHHHHHTT-------CSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-------CCCHHHHHHHHHHHHHCChHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Confidence 55788988864 2333333333333222 1123345788888887766531 1
Q ss_pred hhhhHHHHHHHHHHhccCHHHHHHHHhhhhhh
Q 016200 316 LEEDVYVYNWLQDQLRLSPACKKMFEVCADME 347 (393)
Q Consensus 316 LekDa~VYN~LQqQLKlSpAYKkMlE~ga~~E 347 (393)
+.--..||+.|..+++-||++.-++.+=++.-
T Consensus 248 ~~d~~~~~~~l~~~~~~t~~~~~flSiLQhLL 279 (386)
T 2bnx_A 248 MDDFGEVFQIILNTVKDSKAEPHFLSILQHLL 279 (386)
T ss_dssp CCCHHHHHHHHHHHHTTSTHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHcCCCchhHHHHHHHHHH
Confidence 11223789999999999999988777665544
No 40
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=20.60 E-value=67 Score=21.49 Aligned_cols=18 Identities=44% Similarity=0.532 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 016200 300 DRLRQQIYNLEKQQRRLE 317 (393)
Q Consensus 300 DRL~qQIykLE~EqkRLe 317 (393)
.||.|.|..||-|...|+
T Consensus 10 arlkqeiaaleyeiaale 27 (28)
T 3ra3_B 10 ARLKQEIAALEYEIAALE 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHhc
Confidence 488999999998887775
No 41
>3c7l_A Regulator of G-protein signaling 16; RGS, RGS16, GAP, GTPase activating protein, heterotrimeric G-protein, lipoprotein, palmitate, phosphoprotein; 1.89A {Mus musculus} PDB: 3c7k_B* 2ik8_B*
Probab=20.39 E-value=1.6e+02 Score=23.03 Aligned_cols=72 Identities=21% Similarity=0.391 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHHhhhccCcchHHHHHHHHHhHHHHHHHHhhhhhhhhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHH
Q 016200 233 ATQRKIKELYHQLVQSCESNELTLAQVGEFTKCLAQAREELEDKSETIKRKFSIQKALLSKADRSSIDRLRQQIYNLEKQ 312 (393)
Q Consensus 233 AtQRRIkeqYDELvran~aK~LTLaQV~eF~NcLVdARnEL~~KSE~iqRkftI~KALLskadRSS~DRL~qQIykLE~E 312 (393)
.++.+.+.-|++-+.......+.|.. ..|..+.+. |..++..-||....+|+.+
T Consensus 65 ~~~~~a~~Iy~~yi~~~s~~evNi~~---------~~r~~i~~~--------------l~~~~~~~Fd~aq~~V~~~--- 118 (137)
T 3c7l_A 65 KLASRAHHIFDEYIRSEAPKEVNIDH---------ETRELTKTN--------------LQAATTSCFDVAQGKTRTL--- 118 (137)
T ss_dssp HHHHHHHHHHHHHTSTTCTTCCCCCH---------HHHHHHHHH--------------HHTTCTTTTHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHCCCCCCccCCCCH---------HHHHHHHHH--------------HHcCCHHHHHHHHHHHHHH---
Confidence 45667788888888766555554432 112222111 1246788999999988876
Q ss_pred HHhhhhhHHHHHHHHHHhccCHHHHHH
Q 016200 313 QRRLEEDVYVYNWLQDQLRLSPACKKM 339 (393)
Q Consensus 313 qkRLekDa~VYN~LQqQLKlSpAYKkM 339 (393)
|+.|.+ .+..-|+.|+.+
T Consensus 119 ---m~~d~~------~rFl~S~~y~~~ 136 (137)
T 3c7l_A 119 ---MEKDSY------PRFLKSPAYRDL 136 (137)
T ss_dssp ---HHTTHH------HHHHTSHHHHTT
T ss_pred ---HHHChh------HhhCcCHHHHHh
Confidence 455532 356678888765
No 42
>3pru_C Phycobilisome 32.1 kDa linker polypeptide, phycoc associated, ROD 1; structural genomics, PSI-biology; 2.68A {Synechocystis SP} PDB: 2l8v_A
Probab=20.27 E-value=1.2e+02 Score=26.64 Aligned_cols=49 Identities=31% Similarity=0.388 Sum_probs=36.2
Q ss_pred ccchhHHHHHHHHHHHHH---hhhccCcchHHH---------HHHHHHhHHHHHHHHhhhhhhhhhHHH
Q 016200 229 SMGSATQRKIKELYHQLV---QSCESNELTLAQ---------VGEFTKCLAQAREELEDKSETIKRKFS 285 (393)
Q Consensus 229 S~~sAtQRRIkeqYDELv---ran~aK~LTLaQ---------V~eF~NcLVdARnEL~~KSE~iqRkft 285 (393)
.+...+|.=|.++|.+.. .+-++.+++-++ |++|+..| -||+.-+++|=
T Consensus 15 ~s~~~~~~vI~AaYRQVfgn~~~~~seR~~~lESql~nG~ItVReFVR~L--------akSe~Yr~~f~ 75 (154)
T 3pru_C 15 FSLDDAKMVIRAVYRQVLGNDYIMDSERLKGAESLLTNGSISVREFVRTV--------AKSELYKKKFL 75 (154)
T ss_dssp CCHHHHHHHHHHHHHHHTTSCCCCGGGSCHHHHHHHHHTSSCHHHHHHHH--------HTSHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHhCCccccccccccCHHHHHHcCCcCHHHHHHHH--------HcCHHHHHHhc
Confidence 346789999999999988 344566666655 77777665 48888888763
No 43
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=20.22 E-value=2.7e+02 Score=20.67 Aligned_cols=38 Identities=21% Similarity=0.366 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhhhcc-------CcchHHHHHHHHHhHHHHHHHHh
Q 016200 237 KIKELYHQLVQSCES-------NELTLAQVGEFTKCLAQAREELE 274 (393)
Q Consensus 237 RIkeqYDELvran~a-------K~LTLaQV~eF~NcLVdARnEL~ 274 (393)
+|+..|++|-.+.-. |.-+|....+|+..|-+...+|.
T Consensus 16 ~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~ 60 (83)
T 1nkp_B 16 HIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQ 60 (83)
T ss_dssp HHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999876542 33344445555555555555543
Done!