Query 016201
Match_columns 393
No_of_seqs 245 out of 2555
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 04:43:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016201.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016201hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 100.0 4.3E-45 9.4E-50 359.7 29.5 277 30-340 282-564 (571)
2 KOG4441 Proteins containing BT 100.0 1.7E-44 3.6E-49 355.5 28.5 258 96-389 300-559 (571)
3 PHA02713 hypothetical protein; 100.0 8.2E-44 1.8E-48 352.1 27.9 253 97-387 272-544 (557)
4 PHA02713 hypothetical protein; 100.0 1.6E-40 3.5E-45 328.7 25.9 263 34-333 259-544 (557)
5 PLN02193 nitrile-specifier pro 100.0 1.2E-38 2.6E-43 310.3 35.1 319 30-376 118-468 (470)
6 PLN02153 epithiospecifier prot 100.0 1.1E-38 2.4E-43 299.8 31.6 291 59-365 5-332 (341)
7 TIGR03547 muta_rot_YjhT mutatr 100.0 9.4E-39 2E-43 301.2 27.5 288 66-365 1-339 (346)
8 PLN02153 epithiospecifier prot 100.0 1.8E-37 3.9E-42 291.6 29.7 265 104-384 4-292 (341)
9 PRK14131 N-acetylneuraminic ac 100.0 7.2E-38 1.6E-42 297.5 26.7 305 62-382 18-374 (376)
10 TIGR03548 mutarot_permut cycli 100.0 1.5E-37 3.1E-42 290.2 27.9 249 98-363 40-319 (323)
11 PLN02193 nitrile-specifier pro 100.0 3.5E-37 7.5E-42 300.1 30.4 257 99-385 139-419 (470)
12 PHA03098 kelch-like protein; P 100.0 8.5E-37 1.8E-41 304.1 28.5 254 98-385 265-520 (534)
13 PHA02790 Kelch-like protein; P 100.0 7.3E-36 1.6E-40 291.6 28.8 211 124-384 267-478 (480)
14 TIGR03547 muta_rot_YjhT mutatr 100.0 2E-36 4.2E-41 285.5 23.3 257 23-294 8-333 (346)
15 PHA03098 kelch-like protein; P 100.0 1.8E-35 3.9E-40 294.7 27.3 272 32-338 250-527 (534)
16 KOG4693 Uncharacterized conser 100.0 5.8E-36 1.3E-40 253.1 18.9 284 24-358 15-313 (392)
17 PHA02790 Kelch-like protein; P 100.0 3E-35 6.6E-40 287.2 24.6 190 98-330 288-478 (480)
18 PRK14131 N-acetylneuraminic ac 100.0 1.2E-34 2.5E-39 275.5 24.3 276 23-328 29-374 (376)
19 TIGR03548 mutarot_permut cycli 100.0 1.7E-33 3.6E-38 262.8 26.3 239 118-386 3-289 (323)
20 KOG4693 Uncharacterized conser 100.0 6.5E-30 1.4E-34 216.5 18.4 257 108-386 3-286 (392)
21 KOG0379 Kelch repeat-containin 100.0 3E-28 6.5E-33 236.8 24.9 270 18-357 56-342 (482)
22 KOG0379 Kelch repeat-containin 100.0 1.9E-26 4.1E-31 224.3 24.6 242 114-386 56-311 (482)
23 KOG1230 Protein containing rep 99.9 2.7E-26 5.9E-31 205.3 19.3 260 113-384 61-348 (521)
24 KOG4152 Host cell transcriptio 99.9 1.3E-26 2.8E-31 212.2 15.4 261 19-294 29-344 (830)
25 KOG1230 Protein containing rep 99.9 2.1E-24 4.5E-29 193.3 16.3 220 97-329 98-347 (521)
26 KOG4152 Host cell transcriptio 99.9 5.6E-23 1.2E-27 188.5 19.0 285 60-358 16-343 (830)
27 COG3055 Uncharacterized protei 99.9 2.6E-20 5.6E-25 165.1 19.7 258 98-364 59-366 (381)
28 COG3055 Uncharacterized protei 99.8 4.2E-17 9.1E-22 144.8 18.2 254 110-387 28-337 (381)
29 KOG2437 Muskelin [Signal trans 99.4 3.1E-13 6.7E-18 124.8 3.6 183 107-294 239-459 (723)
30 PF13964 Kelch_6: Kelch motif 99.3 2.8E-12 6E-17 84.5 6.4 49 118-166 1-49 (50)
31 PF13964 Kelch_6: Kelch motif 99.3 7.1E-12 1.5E-16 82.5 6.2 49 169-219 2-50 (50)
32 PF01344 Kelch_1: Kelch motif; 99.2 1.5E-11 3.3E-16 79.8 4.4 47 118-164 1-47 (47)
33 KOG2437 Muskelin [Signal trans 99.2 7.3E-12 1.6E-16 115.8 1.9 180 60-240 238-459 (723)
34 PF01344 Kelch_1: Kelch motif; 99.0 3.2E-10 7E-15 73.5 4.4 47 168-216 1-47 (47)
35 PF07646 Kelch_2: Kelch motif; 99.0 7.1E-10 1.5E-14 72.5 6.0 47 118-164 1-49 (49)
36 PF13418 Kelch_4: Galactose ox 99.0 4.7E-10 1E-14 73.4 4.1 47 118-164 1-48 (49)
37 PF13415 Kelch_3: Galactose ox 99.0 1.2E-09 2.7E-14 71.3 5.6 49 178-227 1-49 (49)
38 PF07646 Kelch_2: Kelch motif; 98.9 3.2E-09 7E-14 69.3 6.3 49 168-216 1-49 (49)
39 PF13415 Kelch_3: Galactose ox 98.9 7.2E-09 1.6E-13 67.7 6.3 48 128-177 1-49 (49)
40 PF13418 Kelch_4: Galactose ox 98.8 6.3E-09 1.4E-13 68.0 4.5 46 169-216 2-48 (49)
41 smart00612 Kelch Kelch domain. 98.8 7.7E-09 1.7E-13 66.9 4.9 47 180-229 1-47 (47)
42 smart00612 Kelch Kelch domain. 98.7 2.4E-08 5.3E-13 64.5 5.2 47 130-179 1-47 (47)
43 PF13854 Kelch_5: Kelch motif 98.6 1.4E-07 3E-12 59.2 5.2 41 115-155 1-42 (42)
44 PF07250 Glyoxal_oxid_N: Glyox 98.6 8.1E-06 1.7E-10 71.8 17.6 154 145-335 46-211 (243)
45 PLN02772 guanylate kinase 98.4 1.5E-06 3.4E-11 81.0 10.8 87 116-207 22-110 (398)
46 PLN02772 guanylate kinase 98.4 2.6E-06 5.7E-11 79.5 10.3 69 168-238 24-96 (398)
47 TIGR01640 F_box_assoc_1 F-box 98.3 0.00026 5.7E-09 62.7 21.3 182 98-291 15-216 (230)
48 TIGR01640 F_box_assoc_1 F-box 98.2 0.0004 8.7E-09 61.5 21.1 198 145-378 14-230 (230)
49 PF13854 Kelch_5: Kelch motif 98.2 2.8E-06 6.1E-11 53.2 5.1 39 167-206 3-41 (42)
50 PF07250 Glyoxal_oxid_N: Glyox 98.1 0.00012 2.6E-09 64.5 15.1 148 98-271 47-210 (243)
51 PF03089 RAG2: Recombination a 97.8 0.0022 4.7E-08 56.5 16.6 159 130-294 39-231 (337)
52 PF03089 RAG2: Recombination a 97.6 0.0034 7.3E-08 55.3 15.0 113 180-294 40-176 (337)
53 PF07893 DUF1668: Protein of u 97.6 0.0056 1.2E-07 57.5 17.5 124 177-331 75-216 (342)
54 PRK11138 outer membrane biogen 97.6 0.075 1.6E-06 51.1 25.4 247 28-353 116-382 (394)
55 PRK11138 outer membrane biogen 97.5 0.076 1.7E-06 51.1 24.7 254 27-353 64-341 (394)
56 TIGR03300 assembly_YfgL outer 97.0 0.32 7E-06 46.4 23.2 198 97-355 155-369 (377)
57 TIGR03300 assembly_YfgL outer 96.8 0.52 1.1E-05 44.9 25.3 211 27-289 60-286 (377)
58 PF07893 DUF1668: Protein of u 96.4 0.1 2.2E-06 49.1 14.0 112 98-217 87-221 (342)
59 PF12768 Rax2: Cortical protei 96.0 0.2 4.4E-06 45.4 13.4 107 98-214 17-130 (281)
60 PF13360 PQQ_2: PQQ-like domai 96.0 0.98 2.1E-05 39.6 23.0 161 98-292 4-183 (238)
61 KOG2055 WD40 repeat protein [G 95.8 0.34 7.4E-06 45.8 13.8 99 93-208 276-377 (514)
62 PRK13684 Ycf48-like protein; P 95.8 1.4 3E-05 41.4 18.3 202 99-355 111-321 (334)
63 PF12768 Rax2: Cortical protei 95.7 0.22 4.7E-06 45.3 12.0 122 131-268 1-130 (281)
64 PRK13684 Ycf48-like protein; P 95.5 2.2 4.7E-05 40.1 21.5 164 98-290 67-233 (334)
65 smart00284 OLF Olfactomedin-li 95.5 0.76 1.7E-05 40.9 14.5 185 128-353 34-241 (255)
66 PF08450 SGL: SMP-30/Gluconola 95.4 0.76 1.6E-05 40.9 14.5 104 96-212 21-129 (246)
67 KOG0310 Conserved WD40 repeat- 94.0 2.2 4.8E-05 40.8 14.0 175 127-358 121-301 (487)
68 PF02191 OLF: Olfactomedin-lik 93.9 3.4 7.5E-05 36.9 14.7 183 128-353 30-236 (250)
69 PF13360 PQQ_2: PQQ-like domai 93.6 4.6 9.9E-05 35.3 17.6 162 146-356 4-182 (238)
70 cd00200 WD40 WD40 domain, foun 93.4 5 0.00011 35.1 20.3 22 129-156 105-126 (289)
71 TIGR03866 PQQ_ABC_repeats PQQ- 93.3 5.9 0.00013 35.6 21.3 144 33-208 1-148 (300)
72 PF05096 Glu_cyclase_2: Glutam 92.4 1.3 2.9E-05 39.5 9.6 100 173-292 49-149 (264)
73 KOG2055 WD40 repeat protein [G 92.4 4.4 9.5E-05 38.7 13.3 174 128-355 224-406 (514)
74 PF08450 SGL: SMP-30/Gluconola 92.0 8.3 0.00018 34.1 16.2 215 32-289 11-244 (246)
75 PF02191 OLF: Olfactomedin-lik 89.9 11 0.00024 33.6 13.2 184 30-234 28-236 (250)
76 PF14870 PSII_BNR: Photosynthe 89.4 17 0.00038 33.4 20.4 203 99-355 83-294 (302)
77 PF14870 PSII_BNR: Photosynthe 88.4 20 0.00044 33.0 18.7 162 98-289 38-204 (302)
78 PF05096 Glu_cyclase_2: Glutam 88.0 5.2 0.00011 35.8 9.5 96 127-238 54-149 (264)
79 PRK04792 tolB translocation pr 87.5 30 0.00065 33.9 18.5 103 98-213 243-346 (448)
80 PLN00033 photosystem II stabil 87.3 29 0.00062 33.4 19.5 97 99-212 112-214 (398)
81 TIGR03866 PQQ_ABC_repeats PQQ- 87.2 22 0.00047 31.9 17.8 66 130-211 2-67 (300)
82 PF03178 CPSF_A: CPSF A subuni 87.1 11 0.00024 34.9 12.0 124 179-337 42-174 (321)
83 smart00284 OLF Olfactomedin-li 87.0 22 0.00048 31.8 14.2 110 114-235 69-192 (255)
84 KOG0289 mRNA splicing factor [ 86.8 21 0.00045 34.1 12.9 120 173-336 352-476 (506)
85 PF08268 FBA_3: F-box associat 86.2 12 0.00026 29.4 10.1 83 175-266 2-87 (129)
86 PLN00033 photosystem II stabil 85.6 35 0.00077 32.8 19.2 51 103-160 162-214 (398)
87 PF03178 CPSF_A: CPSF A subuni 85.5 11 0.00025 34.8 11.2 78 145-234 62-145 (321)
88 PF12217 End_beta_propel: Cata 85.3 27 0.00058 31.1 15.8 186 104-292 112-334 (367)
89 KOG2048 WD40 repeat protein [G 84.8 47 0.001 33.6 17.7 31 52-84 48-78 (691)
90 cd00094 HX Hemopexin-like repe 84.0 21 0.00046 30.4 11.3 60 128-208 110-178 (194)
91 KOG0310 Conserved WD40 repeat- 83.9 43 0.00093 32.4 14.1 136 126-294 163-302 (487)
92 PF12217 End_beta_propel: Cata 83.8 18 0.00039 32.2 10.4 160 26-187 78-258 (367)
93 cd00094 HX Hemopexin-like repe 83.7 26 0.00057 29.8 15.2 94 123-237 11-119 (194)
94 PF08268 FBA_3: F-box associat 83.3 14 0.00031 29.0 9.3 84 126-213 3-88 (129)
95 COG1520 FOG: WD40-like repeat 82.8 44 0.00095 31.7 17.5 225 28-291 64-305 (370)
96 KOG0649 WD40 repeat protein [G 82.1 35 0.00076 30.1 12.2 117 155-293 99-228 (325)
97 PLN03215 ascorbic acid mannose 82.0 47 0.001 31.6 13.4 102 154-269 189-304 (373)
98 COG4257 Vgb Streptogramin lyas 81.3 33 0.00071 31.0 11.2 61 144-213 253-313 (353)
99 PF13859 BNR_3: BNR repeat-lik 80.5 42 0.00091 31.1 12.4 201 172-391 2-223 (310)
100 PRK05137 tolB translocation pr 79.6 63 0.0014 31.4 22.3 64 145-216 226-289 (435)
101 TIGR02800 propeller_TolB tol-p 79.6 60 0.0013 31.1 19.9 63 145-215 214-276 (417)
102 TIGR03075 PQQ_enz_alc_DH PQQ-d 79.4 55 0.0012 32.9 13.9 97 122-234 63-171 (527)
103 PRK04792 tolB translocation pr 77.6 75 0.0016 31.1 22.7 62 145-214 242-303 (448)
104 PLN00181 protein SPA1-RELATED; 77.2 77 0.0017 33.7 15.0 48 197-251 555-605 (793)
105 PF13088 BNR_2: BNR repeat-lik 77.2 15 0.00033 33.0 8.6 152 128-290 58-226 (275)
106 PF10282 Lactonase: Lactonase, 76.6 67 0.0015 30.1 14.2 97 133-234 3-104 (345)
107 TIGR03075 PQQ_enz_alc_DH PQQ-d 76.3 74 0.0016 32.0 13.7 97 223-354 64-172 (527)
108 PRK11028 6-phosphogluconolacto 75.4 68 0.0015 29.6 19.2 92 130-235 3-98 (330)
109 KOG0289 mRNA splicing factor [ 74.9 30 0.00065 33.1 9.6 122 24-165 349-474 (506)
110 PRK00178 tolB translocation pr 74.2 87 0.0019 30.3 22.2 63 145-215 223-285 (430)
111 TIGR03074 PQQ_membr_DH membran 73.9 1.1E+02 0.0025 32.2 14.7 15 222-236 188-202 (764)
112 KOG0649 WD40 repeat protein [G 73.9 64 0.0014 28.6 15.6 129 128-289 126-263 (325)
113 cd00216 PQQ_DH Dehydrogenases 73.5 1E+02 0.0022 30.6 24.3 34 317-353 418-454 (488)
114 PRK04922 tolB translocation pr 73.4 93 0.002 30.2 22.2 62 145-214 228-289 (433)
115 KOG0296 Angio-associated migra 73.0 83 0.0018 29.5 12.3 60 172-239 68-128 (399)
116 PRK04922 tolB translocation pr 71.1 1.1E+02 0.0023 29.9 20.1 21 196-216 227-247 (433)
117 KOG1332 Vesicle coat complex C 70.9 76 0.0016 28.1 11.4 47 180-234 176-238 (299)
118 PRK03629 tolB translocation pr 70.7 1.1E+02 0.0023 29.8 17.1 169 98-292 224-394 (429)
119 PF09910 DUF2139: Uncharacteri 70.6 86 0.0019 28.7 17.5 184 158-376 26-244 (339)
120 PLN00181 protein SPA1-RELATED; 70.6 1.5E+02 0.0033 31.5 15.9 99 129-251 545-647 (793)
121 COG1520 FOG: WD40-like repeat 70.5 98 0.0021 29.3 18.9 135 124-289 64-204 (370)
122 PRK05137 tolB translocation pr 70.4 1.1E+02 0.0024 29.8 20.8 66 144-217 181-246 (435)
123 cd00200 WD40 WD40 domain, foun 70.3 71 0.0015 27.5 17.4 64 128-208 62-126 (289)
124 PTZ00421 coronin; Provisional 69.9 1.2E+02 0.0026 30.1 17.2 102 128-251 87-197 (493)
125 TIGR02800 propeller_TolB tol-p 68.5 1.1E+02 0.0024 29.2 20.5 147 196-384 213-362 (417)
126 KOG1332 Vesicle coat complex C 67.5 51 0.0011 29.2 8.7 73 117-214 221-296 (299)
127 PRK00178 tolB translocation pr 65.9 1.3E+02 0.0029 29.0 21.1 21 196-216 222-242 (430)
128 PLN03215 ascorbic acid mannose 65.8 96 0.0021 29.5 11.0 101 260-385 189-303 (373)
129 PRK11028 6-phosphogluconolacto 65.0 1.2E+02 0.0025 28.1 24.0 94 98-207 58-158 (330)
130 PRK02889 tolB translocation pr 64.0 1.5E+02 0.0031 28.8 18.1 64 145-216 176-239 (427)
131 PF10282 Lactonase: Lactonase, 63.9 1.3E+02 0.0028 28.2 12.9 146 122-292 147-312 (345)
132 COG3386 Gluconolactonase [Carb 63.1 1.3E+02 0.0028 27.9 19.1 180 147-357 87-277 (307)
133 PRK04043 tolB translocation pr 62.6 1.5E+02 0.0034 28.7 17.0 104 98-214 214-318 (419)
134 cd00216 PQQ_DH Dehydrogenases 62.4 1.7E+02 0.0037 29.0 15.5 94 174-287 57-161 (488)
135 KOG1036 Mitotic spindle checkp 62.4 98 0.0021 28.3 9.8 37 25-69 57-93 (323)
136 KOG2048 WD40 repeat protein [G 60.9 2E+02 0.0043 29.4 18.0 174 37-235 169-350 (691)
137 PRK04043 tolB translocation pr 60.9 1.7E+02 0.0036 28.5 13.9 110 97-215 257-367 (419)
138 KOG0281 Beta-TrCP (transducin 59.3 30 0.00065 32.1 6.2 195 16-251 226-427 (499)
139 PRK03629 tolB translocation pr 55.4 2.1E+02 0.0045 27.8 22.3 63 145-215 223-285 (429)
140 KOG0322 G-protein beta subunit 54.3 65 0.0014 28.9 7.2 116 32-165 163-288 (323)
141 PRK02889 tolB translocation pr 54.2 2.1E+02 0.0046 27.7 21.0 61 145-214 220-281 (427)
142 TIGR03074 PQQ_membr_DH membran 52.5 3.1E+02 0.0068 29.1 16.8 33 122-161 188-222 (764)
143 COG4447 Uncharacterized protei 50.4 98 0.0021 28.1 7.7 112 155-290 32-146 (339)
144 PF13570 PQQ_3: PQQ-like domai 50.0 45 0.00097 19.8 4.2 25 173-206 16-40 (40)
145 KOG1523 Actin-related protein 48.8 2.2E+02 0.0048 26.3 12.2 108 196-335 31-144 (361)
146 KOG0278 Serine/threonine kinas 46.0 2.2E+02 0.0048 25.5 10.6 52 178-239 235-289 (334)
147 PF07734 FBA_1: F-box associat 44.5 1.7E+02 0.0038 23.9 10.3 86 175-268 2-92 (164)
148 KOG3545 Olfactomedin and relat 43.7 2.4E+02 0.0051 25.1 10.8 169 103-288 52-235 (249)
149 KOG0647 mRNA export protein (c 41.7 2.8E+02 0.006 25.6 9.2 43 145-188 94-136 (347)
150 KOG2321 WD40 repeat protein [G 41.2 2.4E+02 0.0051 28.4 9.4 76 116-208 131-208 (703)
151 KOG2445 Nuclear pore complex c 40.9 3E+02 0.0064 25.5 9.6 110 103-216 96-220 (361)
152 PF15525 DUF4652: Domain of un 40.7 2.3E+02 0.0049 24.1 10.1 103 79-183 71-177 (200)
153 PTZ00421 coronin; Provisional 40.4 3.9E+02 0.0084 26.6 18.7 23 128-156 179-201 (493)
154 PF02897 Peptidase_S9_N: Proly 39.3 3.5E+02 0.0076 25.9 13.0 181 98-293 151-347 (414)
155 KOG4649 PQQ (pyrrolo-quinoline 38.9 3E+02 0.0064 24.9 12.1 83 196-294 32-116 (354)
156 KOG1036 Mitotic spindle checkp 38.5 3.2E+02 0.0069 25.1 11.2 92 125-236 61-152 (323)
157 PF13088 BNR_2: BNR repeat-lik 38.4 1.4E+02 0.0031 26.5 7.5 127 101-233 139-275 (275)
158 KOG4378 Nuclear protein COP1 [ 38.2 4.1E+02 0.0089 26.3 13.0 28 209-238 203-230 (673)
159 KOG0291 WD40-repeat-containing 38.2 4.9E+02 0.011 27.2 15.4 123 197-357 330-456 (893)
160 PRK01742 tolB translocation pr 38.1 3.8E+02 0.0083 25.9 15.9 100 98-211 229-330 (429)
161 KOG0647 mRNA export protein (c 37.9 3.3E+02 0.0071 25.1 12.4 18 197-214 94-111 (347)
162 KOG2321 WD40 repeat protein [G 37.5 1.8E+02 0.0039 29.2 8.0 58 179-250 146-203 (703)
163 COG4447 Uncharacterized protei 37.1 3.3E+02 0.0071 24.9 13.6 133 31-185 53-188 (339)
164 KOG0316 Conserved WD40 repeat- 35.6 2.6E+02 0.0057 24.8 7.9 85 196-294 80-166 (307)
165 COG4946 Uncharacterized protei 35.5 4.5E+02 0.0096 25.9 17.7 135 144-295 106-248 (668)
166 PF06433 Me-amine-dh_H: Methyl 34.9 1E+02 0.0022 28.8 5.8 70 128-209 249-324 (342)
167 PF13859 BNR_3: BNR repeat-lik 34.1 3.8E+02 0.0083 24.8 15.0 185 123-333 3-217 (310)
168 PTZ00420 coronin; Provisional 32.6 5.5E+02 0.012 26.1 14.8 25 128-154 225-249 (568)
169 KOG0291 WD40-repeat-containing 32.2 6.2E+02 0.013 26.6 17.3 135 129-293 319-457 (893)
170 COG4946 Uncharacterized protei 31.8 5.1E+02 0.011 25.5 16.0 97 98-213 207-303 (668)
171 KOG0316 Conserved WD40 repeat- 31.4 3.8E+02 0.0082 23.9 13.1 132 95-251 121-256 (307)
172 PF15525 DUF4652: Domain of un 29.2 3.6E+02 0.0078 23.0 10.1 88 136-227 79-170 (200)
173 COG4257 Vgb Streptogramin lyas 28.9 4.5E+02 0.0098 24.0 14.5 114 125-266 196-312 (353)
174 KOG0285 Pleiotropic regulator 28.5 5.1E+02 0.011 24.5 18.5 24 32-63 162-185 (460)
175 KOG0279 G protein beta subunit 28.4 4.6E+02 0.0099 23.9 15.0 100 129-251 162-261 (315)
176 KOG0772 Uncharacterized conser 27.9 6.2E+02 0.013 25.3 13.8 179 127-360 225-433 (641)
177 PF05262 Borrelia_P83: Borreli 27.4 4.3E+02 0.0093 26.3 8.9 85 142-234 372-456 (489)
178 KOG0282 mRNA splicing factor [ 27.2 6.1E+02 0.013 24.9 12.3 22 129-156 312-333 (503)
179 PRK10115 protease 2; Provision 26.5 7.6E+02 0.017 25.8 20.3 133 145-293 199-336 (686)
180 KOG0315 G-protein beta subunit 26.3 4.8E+02 0.01 23.4 18.8 99 96-211 60-160 (311)
181 PF09910 DUF2139: Uncharacteri 26.1 5.3E+02 0.011 23.8 18.4 145 121-288 39-219 (339)
182 PRK10115 protease 2; Provision 26.0 7.8E+02 0.017 25.8 16.0 84 145-236 247-333 (686)
183 PF14781 BBS2_N: Ciliary BBSom 25.8 3.5E+02 0.0075 21.6 6.7 47 179-237 64-116 (136)
184 PF02897 Peptidase_S9_N: Proly 24.9 6.1E+02 0.013 24.2 13.8 83 145-235 252-343 (414)
185 PF08950 DUF1861: Protein of u 24.3 3.2E+02 0.007 24.8 6.8 61 125-187 33-95 (298)
186 KOG0278 Serine/threonine kinas 24.1 5.3E+02 0.011 23.2 10.6 53 128-189 235-289 (334)
187 KOG0272 U4/U6 small nuclear ri 23.5 6.8E+02 0.015 24.2 11.2 94 177-293 313-410 (459)
188 KOG0315 G-protein beta subunit 23.3 5.5E+02 0.012 23.1 15.8 53 128-189 51-105 (311)
189 KOG0266 WD40 repeat-containing 22.2 7.5E+02 0.016 24.2 11.6 83 197-293 225-310 (456)
190 KOG0281 Beta-TrCP (transducin 22.1 3.1E+02 0.0067 25.7 6.4 82 197-294 340-421 (499)
191 PF07734 FBA_1: F-box associat 21.8 4.4E+02 0.0096 21.4 9.4 84 125-213 2-91 (164)
192 PF08662 eIF2A: Eukaryotic tra 21.6 5E+02 0.011 21.9 9.3 72 128-216 71-142 (194)
193 TIGR02658 TTQ_MADH_Hv methylam 20.8 7.2E+02 0.016 23.5 13.6 76 130-210 14-90 (352)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=4.3e-45 Score=359.66 Aligned_cols=277 Identities=19% Similarity=0.303 Sum_probs=243.4
Q ss_pred hhccEEEEecCCCCCCCCcccceeeeeecCCCceEEecCCCCCccccccceeEEecCC-----cchhhHHhhcceeeccC
Q 016201 30 LIADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKK-----GQDAERFLSATFADLPA 104 (393)
Q Consensus 30 ~~~~~ly~~GG~~~g~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 104 (393)
...+.||++||.... ...++.+++|||.++.|..++.|+.+ |..++++++++. |...+....+.+++||+
T Consensus 282 ~~~~~l~~vGG~~~~--~~~~~~ve~yd~~~~~w~~~a~m~~~---r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~ 356 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQ--GQSLRSVECYDPKTNEWSSLAPMPSP---RCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDP 356 (571)
T ss_pred CCCCeEEEECCCCCC--CcccceeEEecCCcCcEeecCCCCcc---cccccEEEECCEEEEEccccCCCcccceEEEecC
Confidence 567889999999332 57788999999999999999999988 999999999877 33312334449999999
Q ss_pred CCCCeEEcCCCCccccCccEEEECCEEEEEecCCCCCCccceEEEEECCCCceEeCCCCCCCCCcceeEEEEeCCEEEEE
Q 016201 105 PDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIV 184 (393)
Q Consensus 105 ~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~ 184 (393)
..++|+.+++|+.+|..+++++++++||++||.++... ++++|+|||.+++|+.+++|+. +|.++++++++++||++
T Consensus 357 ~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~-l~svE~YDp~~~~W~~va~m~~--~r~~~gv~~~~g~iYi~ 433 (571)
T KOG4441|consen 357 RTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKS-LNSVECYDPVTNKWTPVAPMLT--RRSGHGVAVLGGKLYII 433 (571)
T ss_pred CCCceeccCCccCccccceeEEECCEEEEEeccccccc-cccEEEecCCCCcccccCCCCc--ceeeeEEEEECCEEEEE
Confidence 99999999999999999999999999999999997664 6899999999999999999998 49999999999999999
Q ss_pred eceeCCCCCCCCCeeEEEeCCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceeEeeeeccccccCCeE
Q 016201 185 SGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWR 264 (393)
Q Consensus 185 GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~d~~~~~~~W~ 264 (393)
||.++... .++.+++|||.+++|+.+++|+.+|.++++++++++||++||+++.....++++|| |.+++|+
T Consensus 434 GG~~~~~~--~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~yd-------p~~~~W~ 504 (571)
T KOG4441|consen 434 GGGDGSSN--CLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYD-------PETNQWT 504 (571)
T ss_pred cCcCCCcc--ccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEc-------CCCCcee
Confidence 99888652 48999999999999999999999999999999999999999998854455566666 8999999
Q ss_pred EeccCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCceEEeC-CCCCeEECCCCCCCCCCcc
Q 016201 265 TEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIE 340 (393)
Q Consensus 265 ~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~r~~~~ 340 (393)
.+++|+.++..+++++++++||++||.++.. .++.|.+|| .+++|+...++...|....
T Consensus 505 ~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~-----------------~l~~ve~ydp~~d~W~~~~~~~~~~~~~~ 564 (571)
T KOG4441|consen 505 MVAPMTSPRSAVGVVVLGGKLYAVGGFDGNN-----------------NLNTVECYDPETDTWTEVTEPESGRGGAG 564 (571)
T ss_pred EcccCccccccccEEEECCEEEEEecccCcc-----------------ccceeEEcCCCCCceeeCCCccccccCcc
Confidence 9999999999999999999999999988764 477899999 5689999998666665543
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.7e-44 Score=355.54 Aligned_cols=258 Identities=22% Similarity=0.401 Sum_probs=231.1
Q ss_pred hcceeeccCCCCCeEEcCCCCccccCccEEEECCEEEEEecCCCCCCccceEEEEECCCCceEeCCCCCCCCCcceeEEE
Q 016201 96 SATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVV 175 (393)
Q Consensus 96 ~~~~~~~~~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~ 175 (393)
...+..||+.++.|..+++||.+|..+++++++++|||+||.+.....++++|+|||.+++|..+++|+.+ |..++++
T Consensus 300 ~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~--R~~~~v~ 377 (571)
T KOG4441|consen 300 LRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTK--RSDFGVA 377 (571)
T ss_pred cceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCc--cccceeE
Confidence 34899999999999999999999999999999999999999994334578999999999999999999984 8999999
Q ss_pred EeCCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCC-CCCCcceeEeeee
Q 016201 176 SDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENR-HTPGLEHWSIAVK 254 (393)
Q Consensus 176 ~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~~~~~~ 254 (393)
+++|+||++||.++... ++.+++|||.+++|+.+++|+.+|.+|++++++++||++||.++.. +.+++++||
T Consensus 378 ~l~g~iYavGG~dg~~~---l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YD---- 450 (571)
T KOG4441|consen 378 VLDGKLYAVGGFDGEKS---LNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYD---- 450 (571)
T ss_pred EECCEEEEEeccccccc---cccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEc----
Confidence 99999999999997644 7899999999999999999999999999999999999999998876 788888887
Q ss_pred ccccccCCeEEeccCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCceEEeC-CCCCeEECCCCC
Q 016201 255 DGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMP 333 (393)
Q Consensus 255 d~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~ 333 (393)
|.+++|+.+++|+.+|.++++++++++||++||.++.. ....|+.|| .+++|+.+++|+
T Consensus 451 ---P~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~-----------------~~~~VE~ydp~~~~W~~v~~m~ 510 (571)
T KOG4441|consen 451 ---PETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTS-----------------ALSSVERYDPETNQWTMVAPMT 510 (571)
T ss_pred ---CCCCceeecCCcccccccceEEEECCEEEEECCccCCC-----------------ccceEEEEcCCCCceeEcccCc
Confidence 89999999999999999999999999999999998732 245599999 568999999999
Q ss_pred CCCCCcceeEEEECCEEEEEcCcCCCCCcccceEEEEEEEeecCCCcccccccccc
Q 016201 334 KPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLPSLQSRFWG 389 (393)
Q Consensus 334 ~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~~~~ 389 (393)
.+|... ++++.++++|++||.++.... + .++.|||++|+|+...+..+.
T Consensus 511 ~~rs~~--g~~~~~~~ly~vGG~~~~~~l-~----~ve~ydp~~d~W~~~~~~~~~ 559 (571)
T KOG4441|consen 511 SPRSAV--GVVVLGGKLYAVGGFDGNNNL-N----TVECYDPETDTWTEVTEPESG 559 (571)
T ss_pred cccccc--cEEEECCEEEEEecccCcccc-c----eeEEcCCCCCceeeCCCcccc
Confidence 999875 458999999999997665553 3 559999999999998875443
No 3
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=8.2e-44 Score=352.13 Aligned_cols=253 Identities=14% Similarity=0.208 Sum_probs=215.8
Q ss_pred cceeeccCCCCCeEEcCCCCccccCccEEEECCEEEEEecCCCCCCccceEEEEECCCCceEeCCCCCCCCCcceeEEEE
Q 016201 97 ATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS 176 (393)
Q Consensus 97 ~~~~~~~~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~ 176 (393)
..+++||+.+++|..+++||.+|..+++++++++|||+||.+.....++++++|||.+++|..+++||.+ |..+++++
T Consensus 272 ~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~--R~~~~~~~ 349 (557)
T PHA02713 272 PCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKN--RCRFSLAV 349 (557)
T ss_pred CCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcch--hhceeEEE
Confidence 3689999999999999999999999999999999999999864344568899999999999999999974 88999999
Q ss_pred eCCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCC---------------
Q 016201 177 DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENR--------------- 241 (393)
Q Consensus 177 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~--------------- 241 (393)
++++||++||.++.. ..+.+++|||.+++|+.+++||.+|..+++++++++||++||.++..
T Consensus 350 ~~g~IYviGG~~~~~---~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 350 IDDTIYAIGGQNGTN---VERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred ECCEEEEECCcCCCC---CCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccc
Confidence 999999999986543 36789999999999999999999999999999999999999986421
Q ss_pred ---CCCCcceeEeeeeccccccCCeEEeccCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCceE
Q 016201 242 ---HTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVY 318 (393)
Q Consensus 242 ---~~~~~~~~~~~~~d~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 318 (393)
..+.+++ |||.+++|+.+++|+.+|..+++++++|+||++||.++.. .....++
T Consensus 427 ~~~~~~~ve~-------YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~----------------~~~~~ve 483 (557)
T PHA02713 427 DTHSSNKVIR-------YDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEK----------------NVKTCIF 483 (557)
T ss_pred cccccceEEE-------ECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCC----------------ccceeEE
Confidence 0122333 3389999999999999999999999999999999986432 1224589
Q ss_pred EeC-CC-CCeEECCCCCCCCCCcceeEEEECCEEEEEcCcCCCCCcccceEEEEEEEeecCCCcccccccc
Q 016201 319 MLD-DE-MKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLPSLQSRF 387 (393)
Q Consensus 319 ~yd-~~-~~W~~~~~~~~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~~ 387 (393)
+|| .+ ++|+.+++||.+|..+ ++++++|+||++||..+.. .+|.||+.+++|+.+.+.+
T Consensus 484 ~Ydp~~~~~W~~~~~m~~~r~~~--~~~~~~~~iyv~Gg~~~~~--------~~e~yd~~~~~W~~~~~~~ 544 (557)
T PHA02713 484 RYNTNTYNGWELITTTESRLSAL--HTILHDNTIMMLHCYESYM--------LQDTFNVYTYEWNHICHQH 544 (557)
T ss_pred EecCCCCCCeeEccccCcccccc--eeEEECCEEEEEeeeccee--------ehhhcCcccccccchhhhc
Confidence 999 55 6999999999999864 5589999999999986621 4599999999999987653
No 4
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.6e-40 Score=328.70 Aligned_cols=263 Identities=13% Similarity=0.221 Sum_probs=215.0
Q ss_pred EEEEecCCCCCCCCcccceeeeeecCCCceEEecCCCCCccccccceeEEecCC----cc-hhhHHhhcceeeccCCCCC
Q 016201 34 FMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKK----GQ-DAERFLSATFADLPAPDLE 108 (393)
Q Consensus 34 ~ly~~GG~~~g~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~ 108 (393)
.|++.||. .+ .....+++|||.+++|..+++|+.+ |..++++++++. |. .........+++||+.+++
T Consensus 259 ~l~~~~g~-~~---~~~~~v~~yd~~~~~W~~l~~mp~~---r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~ 331 (557)
T PHA02713 259 CLVCHDTK-YN---VCNPCILVYNINTMEYSVISTIPNH---IINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKI 331 (557)
T ss_pred EEEEecCc-cc---cCCCCEEEEeCCCCeEEECCCCCcc---ccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCe
Confidence 46666653 11 2234689999999999999999887 778888887666 22 1111223489999999999
Q ss_pred eEEcCCCCccccCccEEEECCEEEEEecCCCCCCccceEEEEECCCCceEeCCCCCCCCCcceeEEEEeCCEEEEEecee
Q 016201 109 WEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQY 188 (393)
Q Consensus 109 W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~ 188 (393)
|..+++||.+|..+++++++++||++||.++.. .++++++|||.+++|+.+++||.+ |..+++++++++||++||.+
T Consensus 332 W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~-~~~sve~Ydp~~~~W~~~~~mp~~--r~~~~~~~~~g~IYviGG~~ 408 (557)
T PHA02713 332 HVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTN-VERTIECYTMGDDKWKMLPDMPIA--LSSYGMCVLDQYIYIIGGRT 408 (557)
T ss_pred EeeCCCCcchhhceeEEEECCEEEEECCcCCCC-CCceEEEEECCCCeEEECCCCCcc--cccccEEEECCEEEEEeCCC
Confidence 999999999999999999999999999987544 367899999999999999999985 77888999999999999986
Q ss_pred CCCC---------------CCCCCeeEEEeCCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCC-CCCcceeEee
Q 016201 189 GPQC---------------RGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRH-TPGLEHWSIA 252 (393)
Q Consensus 189 ~~~~---------------~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~-~~~~~~~~~~ 252 (393)
+... ....+.+++|||++++|+.+++|+.+|..+++++++++|||+||.++... .+.+++||
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Yd-- 486 (557)
T PHA02713 409 EHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYN-- 486 (557)
T ss_pred cccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEec--
Confidence 4211 01257899999999999999999999999999999999999999864322 22334444
Q ss_pred eecccccc-CCeEEeccCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCceEEeC-CCCCeEECC
Q 016201 253 VKDGKALE-KAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLP 330 (393)
Q Consensus 253 ~~d~~~~~-~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~ 330 (393)
|.+ ++|+.+++||.+|..+++++++|+||++||.++. .++++|| .+++|+.++
T Consensus 487 -----p~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~--------------------~~~e~yd~~~~~W~~~~ 541 (557)
T PHA02713 487 -----TNTYNGWELITTTESRLSALHTILHDNTIMMLHCYESY--------------------MLQDTFNVYTYEWNHIC 541 (557)
T ss_pred -----CCCCCCeeEccccCcccccceeEEECCEEEEEeeecce--------------------eehhhcCcccccccchh
Confidence 898 8999999999999999999999999999998763 2489999 668999987
Q ss_pred CCC
Q 016201 331 PMP 333 (393)
Q Consensus 331 ~~~ 333 (393)
+..
T Consensus 542 ~~~ 544 (557)
T PHA02713 542 HQH 544 (557)
T ss_pred hhc
Confidence 654
No 5
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=1.2e-38 Score=310.32 Aligned_cols=319 Identities=13% Similarity=0.213 Sum_probs=236.5
Q ss_pred hhccEEEEecCCCCCCCCcccceeeee--ecCC----CceEEecCCCCCccccccceeEEecCC----cch--hhHHhhc
Q 016201 30 LIADFMWASSSSSFSSSSAHLSVASNW--ALEK----SGVVVIPHVNATKIDRQRESVAVIDKK----GQD--AERFLSA 97 (393)
Q Consensus 30 ~~~~~ly~~GG~~~g~~~~~~~~~~~~--d~~~----~~W~~~~~~~~~~~~r~~~~~~~~~~~----~~~--~~~~~~~ 97 (393)
+.+++|+.|+|.+ + ..++.+..| +|.+ ++|..++++...|.+|..|+++++++. |.. .......
T Consensus 118 ~~~~~ivgf~G~~-~---~~~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~ 193 (470)
T PLN02193 118 LQGGKIVGFHGRS-T---DVLHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDK 193 (470)
T ss_pred EcCCeEEEEeccC-C---CcEEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeC
Confidence 4589999999983 2 245555555 6544 799999886555566999999888765 211 1112334
Q ss_pred ceeeccCCCCCeEEcCCC---Cc-cccCccEEEECCEEEEEecCCCCCCccceEEEEECCCCceEeCCCCCC-CCCccee
Q 016201 98 TFADLPAPDLEWEQMPSA---PV-PRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK-DMAHSHL 172 (393)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~---~~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~-~~~r~~~ 172 (393)
++++||+.+++|+.++++ |. +|..+++++++++|||+||.+... .++++++||+.+++|+++++++. |.+|..|
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~-~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h 272 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASR-QYNGFYSFDTTTNEWKLLTPVEEGPTPRSFH 272 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCC-CCccEEEEECCCCEEEEcCcCCCCCCCccce
Confidence 799999999999988753 33 256788999999999999987654 46899999999999999988732 3358899
Q ss_pred EEEEeCCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCC---CCCCCCCceEEEECCEEEEEccCCCCCCCCCccee
Q 016201 173 GVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP---LPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHW 249 (393)
Q Consensus 173 ~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 249 (393)
++++.+++|||+||.+... ..+++++||+.+++|+.+++ +|.+|..|++++++++||++||..+.. .+.+++|
T Consensus 273 ~~~~~~~~iYv~GG~~~~~---~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~-~~dv~~y 348 (470)
T PLN02193 273 SMAADEENVYVFGGVSATA---RLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCE-VDDVHYY 348 (470)
T ss_pred EEEEECCEEEEECCCCCCC---CcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCc-cCceEEE
Confidence 9999999999999987643 36889999999999999874 678899999999999999999986432 3445555
Q ss_pred EeeeeccccccCCeEEeccC---CCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCceEEeC-CCCC
Q 016201 250 SIAVKDGKALEKAWRTEIPI---PRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMK 325 (393)
Q Consensus 250 ~~~~~d~~~~~~~W~~~~~~---p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~ 325 (393)
| +.+++|+.++++ |.+|..+++++++++|||+||...... ........+++++++|| .+++
T Consensus 349 D-------~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~--------~~~~~~~~~~ndv~~~D~~t~~ 413 (470)
T PLN02193 349 D-------PVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDP--------LAHVGPGQLTDGTFALDTETLQ 413 (470)
T ss_pred E-------CCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCcc--------ccccCccceeccEEEEEcCcCE
Confidence 4 799999998754 778888899999999999999864211 00001123567899999 6789
Q ss_pred eEECCCC------CCCCCCcceeEEEEC--CEEEEEcCcCCCCCcccceEEEEEEEeec
Q 016201 326 WKVLPPM------PKPNSHIECAWVIVN--NSIIITGGTTEKHPMTKRMILVGEVFQFH 376 (393)
Q Consensus 326 W~~~~~~------~~~r~~~~~~~~~~~--~~i~v~GG~~~~~~~~~~~~~~~~~y~~~ 376 (393)
|+.+..+ |.+|..+.++++.++ +.|++|||....+...+++ +.++++
T Consensus 414 W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~~D~----~~~~~~ 468 (470)
T PLN02193 414 WERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDL----FFYGID 468 (470)
T ss_pred EEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCccccccce----EEEecC
Confidence 9988743 566665543333333 4599999998766544433 455544
No 6
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1.1e-38 Score=299.82 Aligned_cols=291 Identities=17% Similarity=0.273 Sum_probs=212.6
Q ss_pred CCCceEEecCCCC-CccccccceeEEecCC-----cchh-hHHhhcceeeccCCCCCeEEcCCCC-cccc---CccEEEE
Q 016201 59 EKSGVVVIPHVNA-TKIDRQRESVAVIDKK-----GQDA-ERFLSATFADLPAPDLEWEQMPSAP-VPRL---DGAAIQI 127 (393)
Q Consensus 59 ~~~~W~~~~~~~~-~~~~r~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~W~~~~~~~-~~r~---~~~~~~~ 127 (393)
...+|..++.... .|..|..|+++++++. |... ......++++||+.+++|+++++++ .||. +++++++
T Consensus 5 ~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~ 84 (341)
T PLN02153 5 LQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV 84 (341)
T ss_pred cCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE
Confidence 5677999987421 2344999988888766 2111 1223348999999999999998764 4443 6888999
Q ss_pred CCEEEEEecCCCCCCccceEEEEECCCCceEeCCCCCC---CCCcceeEEEEeCCEEEEEeceeCCCC---CCCCCeeEE
Q 016201 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK---DMAHSHLGVVSDGRYIYIVSGQYGPQC---RGPTSRTFV 201 (393)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~---~~~r~~~~~~~~~~~iyv~GG~~~~~~---~~~~~~v~~ 201 (393)
+++|||+||.+... .++++++||+.+++|+.+++|+. |.+|..+++++.+++|||+||.+.... ...++++++
T Consensus 85 ~~~iyv~GG~~~~~-~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~ 163 (341)
T PLN02153 85 GTKLYIFGGRDEKR-EFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEA 163 (341)
T ss_pred CCEEEEECCCCCCC-ccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEE
Confidence 99999999987654 36789999999999999988722 346889999999999999999864321 113578999
Q ss_pred EeCCCCCeEeCCCCC---CCCCCceEEEECCEEEEEccCCCCC--------CCCCcceeEeeeeccccccCCeEEecc--
Q 016201 202 LDSETRKWDSIPPLP---SPRYSPATQLWRGRLHVMGGSKENR--------HTPGLEHWSIAVKDGKALEKAWRTEIP-- 268 (393)
Q Consensus 202 yd~~~~~W~~~~~~p---~~r~~~~~~~~~~~iyv~GG~~~~~--------~~~~~~~~~~~~~d~~~~~~~W~~~~~-- 268 (393)
||+++++|+.++++. .+|..|++++++++|||+||..... ..+.+++|| +.+++|+.+++
T Consensus 164 yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd-------~~~~~W~~~~~~g 236 (341)
T PLN02153 164 YNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFD-------PASGKWTEVETTG 236 (341)
T ss_pred EECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEE-------cCCCcEEeccccC
Confidence 999999999998764 7899999999999999999975321 123333333 79999999864
Q ss_pred -CCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCceEEeC-CCCCeEECC-----CCCCCCCCcce
Q 016201 269 -IPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLP-----PMPKPNSHIEC 341 (393)
Q Consensus 269 -~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~-----~~~~~r~~~~~ 341 (393)
+|.+|..+++++++++|||+||...... ........+++++|+|| .+++|+.+. ++|.++.++.+
T Consensus 237 ~~P~~r~~~~~~~~~~~iyv~GG~~~~~~--------~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~ 308 (341)
T PLN02153 237 AKPSARSVFAHAVVGKYIIIFGGEVWPDL--------KGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTT 308 (341)
T ss_pred CCCCCcceeeeEEECCEEEEECcccCCcc--------ccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccc
Confidence 6788888899999999999999743210 00001123567899999 678999885 34444444444
Q ss_pred eEEEECCEEEEEcCcCCCCCcccc
Q 016201 342 AWVIVNNSIIITGGTTEKHPMTKR 365 (393)
Q Consensus 342 ~~~~~~~~i~v~GG~~~~~~~~~~ 365 (393)
+++..+++||++||..+.+...++
T Consensus 309 ~~v~~~~~~~~~gG~~~~~~~~~~ 332 (341)
T PLN02153 309 ATVYGKNGLLMHGGKLPTNERTDD 332 (341)
T ss_pred cccCCcceEEEEcCcCCCCccccc
Confidence 434445689999999877654443
No 7
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=9.4e-39 Score=301.24 Aligned_cols=288 Identities=17% Similarity=0.205 Sum_probs=205.2
Q ss_pred ecCCCCCccccccceeEEecCCcchhhHHhhcceeeccC--CCCCeEEcCCCC-ccccCccEEEECCEEEEEecCCCCC-
Q 016201 66 IPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPA--PDLEWEQMPSAP-VPRLDGAAIQIKNLFYVFAGYGSLD- 141 (393)
Q Consensus 66 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~~- 141 (393)
+|+||.+ |...+++++++.-..........+++||+ .+++|.++++|| .+|..+++++++++|||+||.....
T Consensus 1 ~~~lp~~---~~~~~~~~~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~ 77 (346)
T TIGR03547 1 LPDLPVG---FKNGTGAIIGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANS 77 (346)
T ss_pred CCCCCcc---ccCceEEEECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCC
Confidence 3566655 77677767766522222223357888885 678999999999 5899999999999999999985422
Q ss_pred ----CccceEEEEECCCCceEeCCCCCCCCCcceeEEE-EeCCEEEEEeceeCCCC------------------------
Q 016201 142 ----YVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVV-SDGRYIYIVSGQYGPQC------------------------ 192 (393)
Q Consensus 142 ----~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~------------------------ 192 (393)
..++++|+|||.+++|++++. +.|..|.+++++ +++++||++||.+....
T Consensus 78 ~~~~~~~~~v~~Yd~~~~~W~~~~~-~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T TIGR03547 78 EGSPQVFDDVYRYDPKKNSWQKLDT-RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAY 156 (346)
T ss_pred CCcceecccEEEEECCCCEEecCCC-CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHH
Confidence 246889999999999999974 334456666655 78999999999753200
Q ss_pred -------CCCCCeeEEEeCCCCCeEeCCCCCC-CCCCceEEEECCEEEEEccCCCCCCCCCcceeEeeeeccccccCCeE
Q 016201 193 -------RGPTSRTFVLDSETRKWDSIPPLPS-PRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWR 264 (393)
Q Consensus 193 -------~~~~~~v~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~d~~~~~~~W~ 264 (393)
....+.+++|||.+++|+.+++||. +|..+++++++++|||+||..... ....+ +.+|++++.+++|+
T Consensus 157 ~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~---~~~y~~~~~~~~W~ 232 (346)
T TIGR03547 157 FSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPG-LRTAE---VKQYLFTGGKLEWN 232 (346)
T ss_pred hCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCC-ccchh---eEEEEecCCCceee
Confidence 0013789999999999999999996 688999999999999999975432 11222 23455668889999
Q ss_pred EeccCCCCC-------CceeEEEECCEEEEEcCCCCCCCCC--CCCCccccccccceecCceEEeC-CCCCeEECCCCCC
Q 016201 265 TEIPIPRGG-------PHRACFVFNDRLFVVGGQEGDFMAK--PGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPK 334 (393)
Q Consensus 265 ~~~~~p~~~-------~~~~~~~~~~~iyv~GG~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~ 334 (393)
.+++||.++ ..+++++++++|||+||.+.....+ ..+....... ......+++|| .+++|+.+++||.
T Consensus 233 ~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~yd~~~~~W~~~~~lp~ 310 (346)
T TIGR03547 233 KLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEG--LIKAWSSEVYALDNGKWSKVGKLPQ 310 (346)
T ss_pred ecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCC--CCceeEeeEEEecCCcccccCCCCC
Confidence 999987654 2344778999999999986321000 0000000000 00123478888 6789999999999
Q ss_pred CCCCcceeEEEECCEEEEEcCcCCCCCcccc
Q 016201 335 PNSHIECAWVIVNNSIIITGGTTEKHPMTKR 365 (393)
Q Consensus 335 ~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~ 365 (393)
+|.. +++++++++|||+||.+..+...+.
T Consensus 311 ~~~~--~~~~~~~~~iyv~GG~~~~~~~~~~ 339 (346)
T TIGR03547 311 GLAY--GVSVSWNNGVLLIGGENSGGKAVTD 339 (346)
T ss_pred Ccee--eEEEEcCCEEEEEeccCCCCCEeee
Confidence 8865 3458899999999998776655443
No 8
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1.8e-37 Score=291.60 Aligned_cols=265 Identities=18% Similarity=0.247 Sum_probs=198.0
Q ss_pred CCCCCeEEcCC----CCccccCccEEEECCEEEEEecCCCC-CCccceEEEEECCCCceEeCCCCCC-CCC-cceeEEEE
Q 016201 104 APDLEWEQMPS----APVPRLDGAAIQIKNLFYVFAGYGSL-DYVHSHVDVYNFTDNKWVDRFDMPK-DMA-HSHLGVVS 176 (393)
Q Consensus 104 ~~~~~W~~~~~----~~~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~yd~~~~~W~~~~~~~~-~~~-r~~~~~~~ 176 (393)
+.+.+|.++.. +|.||..|++++++++|||+||.... ....+++++||+.+++|+.+++++. |.. +.++++++
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~ 83 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVA 83 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEE
Confidence 35678999976 78999999999999999999998543 3345789999999999999987753 322 34788899
Q ss_pred eCCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCCC-----CCCCCCceEEEECCEEEEEccCCCCCCCCCcce-eE
Q 016201 177 DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPL-----PSPRYSPATQLWRGRLHVMGGSKENRHTPGLEH-WS 250 (393)
Q Consensus 177 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~-----p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~-~~ 250 (393)
++++|||+||.+... ..+++++||+.+++|+.+++| |.+|..|++++++++|||+||............ .+
T Consensus 84 ~~~~iyv~GG~~~~~---~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 160 (341)
T PLN02153 84 VGTKLYIFGGRDEKR---EFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRT 160 (341)
T ss_pred ECCEEEEECCCCCCC---ccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccce
Confidence 999999999986543 368999999999999999877 889999999999999999999864322111111 12
Q ss_pred eeeeccccccCCeEEeccCC---CCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCceEEeC-CCCCe
Q 016201 251 IAVKDGKALEKAWRTEIPIP---RGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKW 326 (393)
Q Consensus 251 ~~~~d~~~~~~~W~~~~~~p---~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W 326 (393)
+.+ ||+.+++|+.++++. .+|.++++++++++|||+||....... ++ ......+++++|| .+++|
T Consensus 161 v~~--yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~--gG-------~~~~~~~~v~~yd~~~~~W 229 (341)
T PLN02153 161 IEA--YNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILP--GG-------KSDYESNAVQFFDPASGKW 229 (341)
T ss_pred EEE--EECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEecccccccc--CC-------ccceecCceEEEEcCCCcE
Confidence 222 338999999987653 677888899999999999997532100 00 0011246799999 67899
Q ss_pred EECCC---CCCCCCCcceeEEEECCEEEEEcCcCCCCC----cccceEEEEEEEeecCCCccccc
Q 016201 327 KVLPP---MPKPNSHIECAWVIVNNSIIITGGTTEKHP----MTKRMILVGEVFQFHLDSLPSLQ 384 (393)
Q Consensus 327 ~~~~~---~~~~r~~~~~~~~~~~~~i~v~GG~~~~~~----~~~~~~~~~~~y~~~~~~W~~~~ 384 (393)
+.++. +|.+|..+ ++++++++||||||...... ........++.||+++++|+.+.
T Consensus 230 ~~~~~~g~~P~~r~~~--~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~ 292 (341)
T PLN02153 230 TEVETTGAKPSARSVF--AHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLG 292 (341)
T ss_pred EeccccCCCCCCccee--eeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEecc
Confidence 99864 67777654 55889999999999742210 01111224589999999999875
No 9
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=7.2e-38 Score=297.49 Aligned_cols=305 Identities=16% Similarity=0.152 Sum_probs=215.4
Q ss_pred ceEEecCCCCCccccccceeEEecCCcchhhHHhhcceeeccCC--CCCeEEcCCCC-ccccCccEEEECCEEEEEecCC
Q 016201 62 GVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAP--DLEWEQMPSAP-VPRLDGAAIQIKNLFYVFAGYG 138 (393)
Q Consensus 62 ~W~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~ 138 (393)
.+..+|+||.+ +...+++++++.-..........++.||.. +++|.++++|| .+|..+++++++++|||+||..
T Consensus 18 ~~~~l~~lP~~---~~~~~~~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~ 94 (376)
T PRK14131 18 NAEQLPDLPVP---FKNGTGAIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIG 94 (376)
T ss_pred ecccCCCCCcC---ccCCeEEEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCC
Confidence 45677888876 666667776655322111222357888875 47899999998 5899999999999999999986
Q ss_pred C-C----CCccceEEEEECCCCceEeCCCCCCCCCcceeEEEE-eCCEEEEEeceeCCC---------------------
Q 016201 139 S-L----DYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQ--------------------- 191 (393)
Q Consensus 139 ~-~----~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~--------------------- 191 (393)
. . ...++++++||+.+++|+.++++ .|.++.++++++ .+++||++||.+...
T Consensus 95 ~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~-~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i 173 (376)
T PRK14131 95 KTNSEGSPQVFDDVYKYDPKTNSWQKLDTR-SPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKI 173 (376)
T ss_pred CCCCCCceeEcccEEEEeCCCCEEEeCCCC-CCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhh
Confidence 4 1 12467899999999999999863 233466666665 899999999975310
Q ss_pred ----------CCCCCCeeEEEeCCCCCeEeCCCCCC-CCCCceEEEECCEEEEEccCCCCCCCCCcceeEeeeecccccc
Q 016201 192 ----------CRGPTSRTFVLDSETRKWDSIPPLPS-PRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALE 260 (393)
Q Consensus 192 ----------~~~~~~~v~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~d~~~~~ 260 (393)
.....+++++||+.+++|+.++++|. +|..+++++++++|||+||..... ....+.|+ +++++++
T Consensus 174 ~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~-~~~~~~~~---~~~~~~~ 249 (376)
T PRK14131 174 NDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPG-LRTDAVKQ---GKFTGNN 249 (376)
T ss_pred HHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCC-cCChhheE---EEecCCC
Confidence 00124789999999999999999996 788889999999999999975332 22333332 3456889
Q ss_pred CCeEEeccCCCCCC--------ceeEEEECCEEEEEcCCCCCCCC--CCCCCccccccccceecCceEEeC-CCCCeEEC
Q 016201 261 KAWRTEIPIPRGGP--------HRACFVFNDRLFVVGGQEGDFMA--KPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVL 329 (393)
Q Consensus 261 ~~W~~~~~~p~~~~--------~~~~~~~~~~iyv~GG~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~ 329 (393)
++|+.+++||.++. ++.+++++++|||+||.+..... ...+.........+ ...+++|| .+++|+.+
T Consensus 250 ~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~--~~~~e~yd~~~~~W~~~ 327 (376)
T PRK14131 250 LKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKK--SWSDEIYALVNGKWQKV 327 (376)
T ss_pred cceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcc--eeehheEEecCCccccc
Confidence 99999999876553 22356789999999998642100 00000000000000 12467888 66899999
Q ss_pred CCCCCCCCCcceeEEEECCEEEEEcCcCCCCCcccceEEEEEEEeecCCCccc
Q 016201 330 PPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLPS 382 (393)
Q Consensus 330 ~~~~~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~y~~~~~~W~~ 382 (393)
++||.+|..+ +++.++++|||+||....+...+ .++.|+++.++++.
T Consensus 328 ~~lp~~r~~~--~av~~~~~iyv~GG~~~~~~~~~----~v~~~~~~~~~~~~ 374 (376)
T PRK14131 328 GELPQGLAYG--VSVSWNNGVLLIGGETAGGKAVS----DVTLLSWDGKKLTV 374 (376)
T ss_pred CcCCCCccce--EEEEeCCEEEEEcCCCCCCcEee----eEEEEEEcCCEEEE
Confidence 9999999865 45889999999999876554444 44889999877653
No 10
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=1.5e-37 Score=290.16 Aligned_cols=249 Identities=18% Similarity=0.266 Sum_probs=184.9
Q ss_pred ceeecc-CCC-CCeEEcCCCCccccCccEEEECCEEEEEecCCCCCCccceEEEEECCCCce----EeCCCCCCCCCcce
Q 016201 98 TFADLP-APD-LEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKW----VDRFDMPKDMAHSH 171 (393)
Q Consensus 98 ~~~~~~-~~~-~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W----~~~~~~~~~~~r~~ 171 (393)
+++.++ +.. .+|..+++||.+|..+++++++++||++||.++.. .++++++||+.+++| +.+++||.+ |..
T Consensus 40 ~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~~-~~~~v~~~d~~~~~w~~~~~~~~~lp~~--~~~ 116 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSNSSE-RFSSVYRITLDESKEELICETIGNLPFT--FEN 116 (323)
T ss_pred eeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCCCCC-CceeEEEEEEcCCceeeeeeEcCCCCcC--ccC
Confidence 566664 332 27999999999999888899999999999987654 368999999999998 778888875 668
Q ss_pred eEEEEeCCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCCCCC-CCCCceEEEECCEEEEEccCCCCCCCCCcceeE
Q 016201 172 LGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPS-PRYSPATQLWRGRLHVMGGSKENRHTPGLEHWS 250 (393)
Q Consensus 172 ~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 250 (393)
+++++++++|||+||.... ...+++++||+.+++|+++++||. +|..+++++++++|||+||.+... ..++++||
T Consensus 117 ~~~~~~~~~iYv~GG~~~~---~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~-~~~~~~yd 192 (323)
T TIGR03548 117 GSACYKDGTLYVGGGNRNG---KPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIA-YTDGYKYS 192 (323)
T ss_pred ceEEEECCEEEEEeCcCCC---ccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCcc-ccceEEEe
Confidence 8889999999999997543 237899999999999999999984 799999999999999999986432 12233343
Q ss_pred eeeeccccccCCeEEeccC-----CCCCCceeE-EEECCEEEEEcCCCCCCCCCCCCCccc----------------ccc
Q 016201 251 IAVKDGKALEKAWRTEIPI-----PRGGPHRAC-FVFNDRLFVVGGQEGDFMAKPGSPIFK----------------CSR 308 (393)
Q Consensus 251 ~~~~d~~~~~~~W~~~~~~-----p~~~~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~----------------~~~ 308 (393)
|.+++|+.++++ |+.+..+++ +..+++|||+||.+.....+.. +.+. ...
T Consensus 193 -------~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 264 (323)
T TIGR03548 193 -------PKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAV-IDLATMKDESLKGYKKEYFLKPP 264 (323)
T ss_pred -------cCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHH-hhhhhccchhhhhhHHHHhCCCc
Confidence 799999999865 333333343 4457999999998743100000 0000 000
Q ss_pred ccceecCceEEeC-CCCCeEECCCCC-CCCCCcceeEEEECCEEEEEcCcCCCCCcc
Q 016201 309 RHEVVYGDVYMLD-DEMKWKVLPPMP-KPNSHIECAWVIVNNSIIITGGTTEKHPMT 363 (393)
Q Consensus 309 ~~~~~~~~v~~yd-~~~~W~~~~~~~-~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~ 363 (393)
....+.+++++|| .+++|+.++++| .+|.. ++++.++++||++||....+.++
T Consensus 265 ~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~--~~~~~~~~~iyv~GG~~~pg~rt 319 (323)
T TIGR03548 265 EWYNWNRKILIYNVRTGKWKSIGNSPFFARCG--AALLLTGNNIFSINGELKPGVRT 319 (323)
T ss_pred cccCcCceEEEEECCCCeeeEcccccccccCc--hheEEECCEEEEEeccccCCcCC
Confidence 1112457799999 668999999887 46665 45689999999999987655443
No 11
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=3.5e-37 Score=300.07 Aligned_cols=257 Identities=19% Similarity=0.274 Sum_probs=202.5
Q ss_pred eeeccCCC----CCeEEcCC---CCccccCccEEEECCEEEEEecCCCCC-CccceEEEEECCCCceEeCCCCC-CCC-C
Q 016201 99 FADLPAPD----LEWEQMPS---APVPRLDGAAIQIKNLFYVFAGYGSLD-YVHSHVDVYNFTDNKWVDRFDMP-KDM-A 168 (393)
Q Consensus 99 ~~~~~~~~----~~W~~~~~---~~~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~yd~~~~~W~~~~~~~-~~~-~ 168 (393)
++.+++.+ ++|.++++ +|.||..|++++++++|||+||..... ...+++++||+.+++|+.++++. .|. .
T Consensus 139 ~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~ 218 (470)
T PLN02193 139 AYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLS 218 (470)
T ss_pred EEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCc
Confidence 34446544 79999886 588999999999999999999975432 34468999999999999887542 222 3
Q ss_pred cceeEEEEeCCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCCC---CCCCCCceEEEECCEEEEEccCCCCCCCCC
Q 016201 169 HSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPL---PSPRYSPATQLWRGRLHVMGGSKENRHTPG 245 (393)
Q Consensus 169 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 245 (393)
|.++++++++++|||+||.+... ..+++++||+.+++|++++++ |.+|..|++++++++|||+||.......+.
T Consensus 219 ~~~~~~v~~~~~lYvfGG~~~~~---~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~ 295 (470)
T PLN02193 219 CLGVRMVSIGSTLYVFGGRDASR---QYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKT 295 (470)
T ss_pred ccceEEEEECCEEEEECCCCCCC---CCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcce
Confidence 56888899999999999987542 378999999999999999887 889999999999999999999876555555
Q ss_pred cceeEeeeeccccccCCeEEecc---CCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCceEEeC-
Q 016201 246 LEHWSIAVKDGKALEKAWRTEIP---IPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD- 321 (393)
Q Consensus 246 ~~~~~~~~~d~~~~~~~W~~~~~---~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd- 321 (393)
+++|+ +.+++|+.+++ +|.+|..+++++++++||++||.++.. .+++++||
T Consensus 296 ~~~yd-------~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~------------------~~dv~~yD~ 350 (470)
T PLN02193 296 LDSYN-------IVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCE------------------VDDVHYYDP 350 (470)
T ss_pred EEEEE-------CCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCc------------------cCceEEEEC
Confidence 55555 68999999864 567788889999999999999986431 46799999
Q ss_pred CCCCeEECCCC---CCCCCCcceeEEEECCEEEEEcCcCCCCCc----ccceEEEEEEEeecCCCcccccc
Q 016201 322 DEMKWKVLPPM---PKPNSHIECAWVIVNNSIIITGGTTEKHPM----TKRMILVGEVFQFHLDSLPSLQS 385 (393)
Q Consensus 322 ~~~~W~~~~~~---~~~r~~~~~~~~~~~~~i~v~GG~~~~~~~----~~~~~~~~~~y~~~~~~W~~~~~ 385 (393)
.+++|+.++.+ |.+|..+ ++++++++||||||....... .......+++||+.+++|+.+..
T Consensus 351 ~t~~W~~~~~~g~~P~~R~~~--~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~ 419 (470)
T PLN02193 351 VQDKWTQVETFGVRPSERSVF--ASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDK 419 (470)
T ss_pred CCCEEEEeccCCCCCCCccee--EEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEccc
Confidence 66799998754 7777764 458889999999998642211 01122346899999999998753
No 12
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=8.5e-37 Score=304.14 Aligned_cols=254 Identities=20% Similarity=0.291 Sum_probs=209.7
Q ss_pred ceeeccCCCCCeEEcCCCCccccCccEEEECCEEEEEecCCCCCCccceEEEEECCCCceEeCCCCCCCCCcceeEEEEe
Q 016201 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD 177 (393)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~ 177 (393)
.+..|+...++|..+++++. +..+++++++++||++||........+++++||+.+++|..+++||.+ |..++++++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~--R~~~~~~~~ 341 (534)
T PHA03098 265 NYITNYSPLSEINTIIDIHY-VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYP--RKNPGVTVF 341 (534)
T ss_pred eeeecchhhhhcccccCccc-cccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcc--cccceEEEE
Confidence 45678888889998877664 345688899999999999977665667899999999999999999874 788999999
Q ss_pred CCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCC-CCCCCcceeEeeeecc
Q 016201 178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKEN-RHTPGLEHWSIAVKDG 256 (393)
Q Consensus 178 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~~~~~~d~ 256 (393)
+++||++||.+.. ...+++++||+.+++|+.+++||.+|..+++++++++||++||.... ...+.+++|+
T Consensus 342 ~~~lyv~GG~~~~---~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd------ 412 (534)
T PHA03098 342 NNRIYVIGGIYNS---ISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFS------ 412 (534)
T ss_pred CCEEEEEeCCCCC---EecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEe------
Confidence 9999999998743 34788999999999999999999999999999999999999997532 2334455555
Q ss_pred ccccCCeEEeccCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCceEEeC-CCCCeEECCCCCCC
Q 016201 257 KALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKP 335 (393)
Q Consensus 257 ~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~ 335 (393)
|.+++|+.++++|.++..+++++.+++||++||.+.... ....+.+++|| .+++|+.+++++.|
T Consensus 413 -~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~--------------~~~~~~v~~yd~~~~~W~~~~~~~~~ 477 (534)
T PHA03098 413 -LNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDN--------------IKVYNIVESYNPVTNKWTELSSLNFP 477 (534)
T ss_pred -CCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCC--------------CcccceEEEecCCCCceeeCCCCCcc
Confidence 789999999999999999999999999999999864321 01234599999 56799999999999
Q ss_pred CCCcceeEEEECCEEEEEcCcCCCCCcccceEEEEEEEeecCCCcccccc
Q 016201 336 NSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLPSLQS 385 (393)
Q Consensus 336 r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~ 385 (393)
|..+ ++++.+++||++||...... .+ .+++||+++++|+.++.
T Consensus 478 r~~~--~~~~~~~~iyv~GG~~~~~~-~~----~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 478 RINA--SLCIFNNKIYVVGGDKYEYY-IN----EIEVYDDKTNTWTLFCK 520 (534)
T ss_pred cccc--eEEEECCEEEEEcCCcCCcc-cc----eeEEEeCCCCEEEecCC
Confidence 8765 44778999999999875442 22 55999999999987754
No 13
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=7.3e-36 Score=291.55 Aligned_cols=211 Identities=19% Similarity=0.312 Sum_probs=179.5
Q ss_pred EEEECCEEEEEecCCCCCCccceEEEEECCCCceEeCCCCCCCCCcceeEEEEeCCEEEEEeceeCCCCCCCCCeeEEEe
Q 016201 124 AIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLD 203 (393)
Q Consensus 124 ~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd 203 (393)
++.+++.||++||.+... ..+.+++|||.+++|..+++|+.+ |..+++++++++||++||.++ .+.+++||
T Consensus 267 ~~~~~~~lyviGG~~~~~-~~~~v~~Ydp~~~~W~~~~~m~~~--r~~~~~v~~~~~iYviGG~~~------~~sve~yd 337 (480)
T PHA02790 267 STHVGEVVYLIGGWMNNE-IHNNAIAVNYISNNWIPIPPMNSP--RLYASGVPANNKLYVVGGLPN------PTSVERWF 337 (480)
T ss_pred eEEECCEEEEEcCCCCCC-cCCeEEEEECCCCEEEECCCCCch--hhcceEEEECCEEEEECCcCC------CCceEEEE
Confidence 455899999999986543 457899999999999999999875 777888999999999999753 35689999
Q ss_pred CCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceeEeeeeccccccCCeEEeccCCCCCCceeEEEECC
Q 016201 204 SETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFND 283 (393)
Q Consensus 204 ~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~p~~~~~~~~~~~~~ 283 (393)
|.+++|+.+++||.+|..+++++++++||++||..+. .+.+++|+ |.+++|+.+++||.++..++++++++
T Consensus 338 p~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~--~~~ve~yd-------p~~~~W~~~~~m~~~r~~~~~~~~~~ 408 (480)
T PHA02790 338 HGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET--DTTTEYLL-------PNHDQWQFGPSTYYPHYKSCALVFGR 408 (480)
T ss_pred CCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC--CccEEEEe-------CCCCEEEeCCCCCCccccceEEEECC
Confidence 9999999999999999999999999999999998543 24455554 89999999999999999999999999
Q ss_pred EEEEEcCCCCCCCCCCCCCccccccccceecCceEEeC-CCCCeEECCCCCCCCCCcceeEEEECCEEEEEcCcCCCCCc
Q 016201 284 RLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPM 362 (393)
Q Consensus 284 ~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~r~~~~~~~~~~~~~i~v~GG~~~~~~~ 362 (393)
+||++||. +++|| .+++|+.+++|+.||..+ ++++++|+||++||.+....
T Consensus 409 ~IYv~GG~-------------------------~e~ydp~~~~W~~~~~m~~~r~~~--~~~v~~~~IYviGG~~~~~~- 460 (480)
T PHA02790 409 RLFLVGRN-------------------------AEFYCESSNTWTLIDDPIYPRDNP--ELIIVDNKLLLIGGFYRGSY- 460 (480)
T ss_pred EEEEECCc-------------------------eEEecCCCCcEeEcCCCCCCcccc--EEEEECCEEEEECCcCCCcc-
Confidence 99999983 56789 568999999999998875 45899999999999864332
Q ss_pred ccceEEEEEEEeecCCCccccc
Q 016201 363 TKRMILVGEVFQFHLDSLPSLQ 384 (393)
Q Consensus 363 ~~~~~~~~~~y~~~~~~W~~~~ 384 (393)
. ..+|.||+++++|+.+.
T Consensus 461 ~----~~ve~Yd~~~~~W~~~~ 478 (480)
T PHA02790 461 I----DTIEVYNNRTYSWNIWD 478 (480)
T ss_pred c----ceEEEEECCCCeEEecC
Confidence 2 25699999999998653
No 14
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=2e-36 Score=285.48 Aligned_cols=257 Identities=19% Similarity=0.307 Sum_probs=192.1
Q ss_pred HHHHHHhhhccEEEEecCCCCCCCCcccceeeeeec--CCCceEEecCCC-CCccccccceeEEecCC-----cchhh--
Q 016201 23 LGLLGAALIADFMWASSSSSFSSSSAHLSVASNWAL--EKSGVVVIPHVN-ATKIDRQRESVAVIDKK-----GQDAE-- 92 (393)
Q Consensus 23 ~~~~~~~~~~~~ly~~GG~~~g~~~~~~~~~~~~d~--~~~~W~~~~~~~-~~~~~r~~~~~~~~~~~-----~~~~~-- 92 (393)
+..+++|+++++|||+||. .. +.+++||+ .+++|..+++|+ .+ |..++++++++. |....
T Consensus 8 ~~~~~~~~~~~~vyv~GG~-~~------~~~~~~d~~~~~~~W~~l~~~p~~~---R~~~~~~~~~~~iYv~GG~~~~~~ 77 (346)
T TIGR03547 8 FKNGTGAIIGDKVYVGLGS-AG------TSWYKLDLKKPSKGWQKIADFPGGP---RNQAVAAAIDGKLYVFGGIGKANS 77 (346)
T ss_pred ccCceEEEECCEEEEEccc-cC------CeeEEEECCCCCCCceECCCCCCCC---cccceEEEECCEEEEEeCCCCCCC
Confidence 3445677999999999998 21 36888986 578899999998 45 888888887666 21100
Q ss_pred ---HHhhcceeeccCCCCCeEEcC-CCCccccCccEE-EECCEEEEEecCCCCC--------------------------
Q 016201 93 ---RFLSATFADLPAPDLEWEQMP-SAPVPRLDGAAI-QIKNLFYVFAGYGSLD-------------------------- 141 (393)
Q Consensus 93 ---~~~~~~~~~~~~~~~~W~~~~-~~~~~r~~~~~~-~~~~~iyv~GG~~~~~-------------------------- 141 (393)
.....++++||+.+++|++++ ++|.+|.+++++ +++++|||+||.+...
T Consensus 78 ~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (346)
T TIGR03547 78 EGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYF 157 (346)
T ss_pred CCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHh
Confidence 012238999999999999997 456677777666 7899999999986321
Q ss_pred -------CccceEEEEECCCCceEeCCCCCCCCCcceeEEEEeCCEEEEEeceeCCCCCCCCCeeEEEe--CCCCCeEeC
Q 016201 142 -------YVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLD--SETRKWDSI 212 (393)
Q Consensus 142 -------~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd--~~~~~W~~~ 212 (393)
..++++++|||.+++|+.+++||.+ +|.++++++++++|||+||...... ...+++.|| +++++|+.+
T Consensus 158 ~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~-~r~~~~~~~~~~~iyv~GG~~~~~~--~~~~~~~y~~~~~~~~W~~~ 234 (346)
T TIGR03547 158 SQPPEDYFWNKNVLSYDPSTNQWRNLGENPFL-GTAGSAIVHKGNKLLLINGEIKPGL--RTAEVKQYLFTGGKLEWNKL 234 (346)
T ss_pred CCChhHcCccceEEEEECCCCceeECccCCCC-cCCCceEEEECCEEEEEeeeeCCCc--cchheEEEEecCCCceeeec
Confidence 0137899999999999999999853 3778899999999999999864331 134555554 577899999
Q ss_pred CCCCCCCC-------CceEEEECCEEEEEccCCCCC----------CC--CCcceeEeeeeccccccCCeEEeccCCCCC
Q 016201 213 PPLPSPRY-------SPATQLWRGRLHVMGGSKENR----------HT--PGLEHWSIAVKDGKALEKAWRTEIPIPRGG 273 (393)
Q Consensus 213 ~~~p~~r~-------~~~~~~~~~~iyv~GG~~~~~----------~~--~~~~~~~~~~~d~~~~~~~W~~~~~~p~~~ 273 (393)
++||.+|. .+.+++++++|||+||..... +. ........++|| +.+++|+.+++||.++
T Consensus 235 ~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd--~~~~~W~~~~~lp~~~ 312 (346)
T TIGR03547 235 PPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYA--LDNGKWSKVGKLPQGL 312 (346)
T ss_pred CCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEE--ecCCcccccCCCCCCc
Confidence 99987752 445778999999999985211 00 001112344444 6789999999999999
Q ss_pred CceeEEEECCEEEEEcCCCCC
Q 016201 274 PHRACFVFNDRLFVVGGQEGD 294 (393)
Q Consensus 274 ~~~~~~~~~~~iyv~GG~~~~ 294 (393)
..+++++++++|||+||.+..
T Consensus 313 ~~~~~~~~~~~iyv~GG~~~~ 333 (346)
T TIGR03547 313 AYGVSVSWNNGVLLIGGENSG 333 (346)
T ss_pred eeeEEEEcCCEEEEEeccCCC
Confidence 888888899999999998754
No 15
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=1.8e-35 Score=294.65 Aligned_cols=272 Identities=16% Similarity=0.277 Sum_probs=212.9
Q ss_pred ccEEEEecCCCCCCCCcccceeeeeecCCCceEEecCCCCCccccccceeEEecCC-----cchhhHHhhcceeeccCCC
Q 016201 32 ADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKK-----GQDAERFLSATFADLPAPD 106 (393)
Q Consensus 32 ~~~ly~~GG~~~g~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 106 (393)
...+++.||. + .....+.+|++.++.|..++.++. +..++++++++. |.........+++.||+.+
T Consensus 250 ~~~~~~~~g~-~----~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~ 320 (534)
T PHA03098 250 GSIIYIHITM-S----IFTYNYITNYSPLSEINTIIDIHY----VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKT 320 (534)
T ss_pred CcceEeeccc-c----hhhceeeecchhhhhcccccCccc----cccceEEEECCEEEEECCCcCCCCeeccEEEEeCCC
Confidence 4556666665 2 123456688888999988876543 233455555544 2221222334899999999
Q ss_pred CCeEEcCCCCccccCccEEEECCEEEEEecCCCCCCccceEEEEECCCCceEeCCCCCCCCCcceeEEEEeCCEEEEEec
Q 016201 107 LEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSG 186 (393)
Q Consensus 107 ~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG 186 (393)
++|..+++||.+|..+++++++++||++||.+.. ..++++++||+.+++|+.+++||.| |..+++++++++||++||
T Consensus 321 ~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~lp~~--r~~~~~~~~~~~iYv~GG 397 (534)
T PHA03098 321 KSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNS-ISLNTVESWKPGESKWREEPPLIFP--RYNPCVVNVNNLIYVIGG 397 (534)
T ss_pred CeeeECCCCCcccccceEEEECCEEEEEeCCCCC-EecceEEEEcCCCCceeeCCCcCcC--CccceEEEECCEEEEECC
Confidence 9999999999999999999999999999998743 3468899999999999999999875 788899999999999999
Q ss_pred eeCCCCCCCCCeeEEEeCCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceeEeeeeccccccCCeEEe
Q 016201 187 QYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTE 266 (393)
Q Consensus 187 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~d~~~~~~~W~~~ 266 (393)
..... ..++++++||+.+++|+.++++|.+|..+++++++++||++||....... ..++ .++.|||.+++|+.+
T Consensus 398 ~~~~~--~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~---~~~~-~v~~yd~~~~~W~~~ 471 (534)
T PHA03098 398 ISKND--ELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNI---KVYN-IVESYNPVTNKWTEL 471 (534)
T ss_pred cCCCC--cccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCC---cccc-eEEEecCCCCceeeC
Confidence 75433 23788999999999999999999999999999999999999997643211 1111 133344899999999
Q ss_pred ccCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCceEEeC-CCCCeEECCCCCCCCCC
Q 016201 267 IPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSH 338 (393)
Q Consensus 267 ~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~r~~ 338 (393)
+++|.++..+++++++++|||+||.+... ..+++++|| .+++|+.++.+|.....
T Consensus 472 ~~~~~~r~~~~~~~~~~~iyv~GG~~~~~-----------------~~~~v~~yd~~~~~W~~~~~~p~~~~~ 527 (534)
T PHA03098 472 SSLNFPRINASLCIFNNKIYVVGGDKYEY-----------------YINEIEVYDDKTNTWTLFCKFPKVIGS 527 (534)
T ss_pred CCCCcccccceEEEECCEEEEEcCCcCCc-----------------ccceeEEEeCCCCEEEecCCCcccccc
Confidence 99998898889999999999999987542 246799999 66899999887765443
No 16
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=5.8e-36 Score=253.10 Aligned_cols=284 Identities=18% Similarity=0.266 Sum_probs=213.5
Q ss_pred HHHHHhhhccEEEEecCCCCCCCCccc--ceeeeeecCCCceEEecCCCCCccccccceeEEecCCcchhhHHhhcceee
Q 016201 24 GLLGAALIADFMWASSSSSFSSSSAHL--SVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFAD 101 (393)
Q Consensus 24 ~~~~~~~~~~~ly~~GG~~~g~~~~~~--~~~~~~d~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (393)
--|+++.|+++||.|||+-.|...... =+|++++-.+-.|..+|+-... ..+.
T Consensus 15 VNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~k------------------------a~i~- 69 (392)
T KOG4693|consen 15 VNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITK------------------------ATIE- 69 (392)
T ss_pred ccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCccccc------------------------cccc-
Confidence 468999999999999997444222222 2467777777778777762111 0000
Q ss_pred ccCCCCCeEEcCCCCccccCccEEEECCEEEEEecCCCCCCccceEEEEECCCCceEeCCCC-CCCCCcceeEEEEeCCE
Q 016201 102 LPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDM-PKDMAHSHLGVVSDGRY 180 (393)
Q Consensus 102 ~~~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~-~~~~~r~~~~~~~~~~~ 180 (393)
.+.+..|..|++|+++.+++++||.||.++.+...+.+++|||++++|.+..-- -.|.+|.+|++++.++.
T Consensus 70 --------~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~ 141 (392)
T KOG4693|consen 70 --------SPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQ 141 (392)
T ss_pred --------CCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcE
Confidence 011235777999999999999999999998888889999999999999874321 11336999999999999
Q ss_pred EEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCC---CCCCCCCCceEEEECCEEEEEccCCCCC--CCCCcceeEeeeec
Q 016201 181 IYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP---PLPSPRYSPATQLWRGRLHVMGGSKENR--HTPGLEHWSIAVKD 255 (393)
Q Consensus 181 iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~--~~~~~~~~~~~~~d 255 (393)
+|||||+-.... ..+++++.+|..|.+|+.+. ..|.=|..|++.++++.+|||||+.... +-+..+.|.-.+-.
T Consensus 142 MyiFGGye~~a~-~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ 220 (392)
T KOG4693|consen 142 MYIFGGYEEDAQ-RFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMA 220 (392)
T ss_pred EEEecChHHHHH-hhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEE
Confidence 999999865332 34789999999999999986 3455589999999999999999986432 22223333322222
Q ss_pred cccccCCeEEecc---CCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCceEEeCCC-CCeEECC-
Q 016201 256 GKALEKAWRTEIP---IPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLDDE-MKWKVLP- 330 (393)
Q Consensus 256 ~~~~~~~W~~~~~---~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~-~~W~~~~- 330 (393)
+|..+..|...++ .|..|.+|++.+.+++||+|||+++. .+...+++|+|||. ..|+.+.
T Consensus 221 ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~---------------ln~HfndLy~FdP~t~~W~~I~~ 285 (392)
T KOG4693|consen 221 LDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGT---------------LNVHFNDLYCFDPKTSMWSVISV 285 (392)
T ss_pred EeccccccccCCCCCcCCCcccccceEEEcceEEEecccchh---------------hhhhhcceeecccccchheeeec
Confidence 3368999999764 57888899999999999999999874 33457899999954 6999874
Q ss_pred --CCCCCCCCcceeEEEECCEEEEEcCcCC
Q 016201 331 --PMPKPNSHIECAWVIVNNSIIITGGTTE 358 (393)
Q Consensus 331 --~~~~~r~~~~~~~~~~~~~i~v~GG~~~ 358 (393)
.-|.+|.+. |+++.++|+|+|||...
T Consensus 286 ~Gk~P~aRRRq--C~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 286 RGKYPSARRRQ--CSVVSGGKVYLFGGTSP 313 (392)
T ss_pred cCCCCCcccce--eEEEECCEEEEecCCCC
Confidence 567777764 45899999999999764
No 17
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=3e-35 Score=287.20 Aligned_cols=190 Identities=18% Similarity=0.342 Sum_probs=167.2
Q ss_pred ceeeccCCCCCeEEcCCCCccccCccEEEECCEEEEEecCCCCCCccceEEEEECCCCceEeCCCCCCCCCcceeEEEEe
Q 016201 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD 177 (393)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~ 177 (393)
.++.||+.+++|..+++|+.+|..+++++++++||++||.+.. +++++|||.+++|+.+++||.+ |..++++++
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~----~sve~ydp~~n~W~~~~~l~~~--r~~~~~~~~ 361 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNP----TSVERWFHGDAAWVNMPSLLKP--RCNPAVASI 361 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCC----CceEEEECCCCeEEECCCCCCC--CcccEEEEE
Confidence 7889999999999999999999999999999999999997532 5699999999999999999985 778899999
Q ss_pred CCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceeEeeeeccc
Q 016201 178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGK 257 (393)
Q Consensus 178 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~d~~ 257 (393)
+++||++||.++. .+.+++|||.+++|+.+++|+.+|..+++++++++||++||. .++|+
T Consensus 362 ~g~IYviGG~~~~-----~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~--------~e~yd------- 421 (480)
T PHA02790 362 NNVIYVIGGHSET-----DTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGRN--------AEFYC------- 421 (480)
T ss_pred CCEEEEecCcCCC-----CccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECCc--------eEEec-------
Confidence 9999999997532 367999999999999999999999999999999999999983 33444
Q ss_pred cccCCeEEeccCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCceEEeC-CCCCeEECC
Q 016201 258 ALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLP 330 (393)
Q Consensus 258 ~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~ 330 (393)
|.+++|+.+++||.+|..+++++++|+||++||.++.. ..+.+++|| .+++|+...
T Consensus 422 p~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~-----------------~~~~ve~Yd~~~~~W~~~~ 478 (480)
T PHA02790 422 ESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGS-----------------YIDTIEVYNNRTYSWNIWD 478 (480)
T ss_pred CCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCc-----------------ccceEEEEECCCCeEEecC
Confidence 79999999999999999999999999999999986432 235699999 668998753
No 18
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=1.2e-34 Score=275.52 Aligned_cols=276 Identities=19% Similarity=0.290 Sum_probs=201.1
Q ss_pred HHHHHHhhhccEEEEecCCCCCCCCcccceeeeeecC--CCceEEecCCCCCccccccceeEEecCC-----cchh----
Q 016201 23 LGLLGAALIADFMWASSSSSFSSSSAHLSVASNWALE--KSGVVVIPHVNATKIDRQRESVAVIDKK-----GQDA---- 91 (393)
Q Consensus 23 ~~~~~~~~~~~~ly~~GG~~~g~~~~~~~~~~~~d~~--~~~W~~~~~~~~~~~~r~~~~~~~~~~~-----~~~~---- 91 (393)
+..+++++++++||++||. .+ +.+++||++ +++|..+++|+.+ .|..++++++++. |...
T Consensus 29 ~~~~~~~~~~~~iyv~gG~-~~------~~~~~~d~~~~~~~W~~l~~~p~~--~r~~~~~v~~~~~IYV~GG~~~~~~~ 99 (376)
T PRK14131 29 FKNGTGAIDNNTVYVGLGS-AG------TSWYKLDLNAPSKGWTKIAAFPGG--PREQAVAAFIDGKLYVFGGIGKTNSE 99 (376)
T ss_pred ccCCeEEEECCEEEEEeCC-CC------CeEEEEECCCCCCCeEECCcCCCC--CcccceEEEECCEEEEEcCCCCCCCC
Confidence 3445678899999999998 22 247888876 4789999998742 2777777777655 2111
Q ss_pred -hHHhhcceeeccCCCCCeEEcCC-CCccccCccEEE-ECCEEEEEecCCCCC---------------------------
Q 016201 92 -ERFLSATFADLPAPDLEWEQMPS-APVPRLDGAAIQ-IKNLFYVFAGYGSLD--------------------------- 141 (393)
Q Consensus 92 -~~~~~~~~~~~~~~~~~W~~~~~-~~~~r~~~~~~~-~~~~iyv~GG~~~~~--------------------------- 141 (393)
......++++||+.+++|+++++ +|.+|..|++++ .+++|||+||.+...
T Consensus 100 ~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~ 179 (376)
T PRK14131 100 GSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFD 179 (376)
T ss_pred CceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhc
Confidence 01123489999999999999986 466777777766 799999999975310
Q ss_pred ------CccceEEEEECCCCceEeCCCCCCCCCcceeEEEEeCCEEEEEeceeCCCCCCCCCee--EEEeCCCCCeEeCC
Q 016201 142 ------YVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRT--FVLDSETRKWDSIP 213 (393)
Q Consensus 142 ------~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v--~~yd~~~~~W~~~~ 213 (393)
..++++++||+.+++|+.++++|.+ +|.+++++.++++|||+||....... ..++ +.||+++++|+.++
T Consensus 180 ~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~-~~~~~a~v~~~~~iYv~GG~~~~~~~--~~~~~~~~~~~~~~~W~~~~ 256 (376)
T PRK14131 180 KKPEDYFFNKEVLSYDPSTNQWKNAGESPFL-GTAGSAVVIKGNKLWLINGEIKPGLR--TDAVKQGKFTGNNLKWQKLP 256 (376)
T ss_pred CChhhcCcCceEEEEECCCCeeeECCcCCCC-CCCcceEEEECCEEEEEeeeECCCcC--ChhheEEEecCCCcceeecC
Confidence 1247899999999999999998864 37788899999999999997654321 3334 45688999999999
Q ss_pred CCCCCCCC--------ceEEEECCEEEEEccCCCCCC----------C--CCcceeEeeeeccccccCCeEEeccCCCCC
Q 016201 214 PLPSPRYS--------PATQLWRGRLHVMGGSKENRH----------T--PGLEHWSIAVKDGKALEKAWRTEIPIPRGG 273 (393)
Q Consensus 214 ~~p~~r~~--------~~~~~~~~~iyv~GG~~~~~~----------~--~~~~~~~~~~~d~~~~~~~W~~~~~~p~~~ 273 (393)
+||.+|.. +.+++++++|||+||...... . .....+..++|| |.+++|+.+++||.+|
T Consensus 257 ~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd--~~~~~W~~~~~lp~~r 334 (376)
T PRK14131 257 DLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYA--LVNGKWQKVGELPQGL 334 (376)
T ss_pred CCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEE--ecCCcccccCcCCCCc
Confidence 99887642 225678999999999753110 0 001112333333 6889999999999999
Q ss_pred CceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCceEEeC-CCCCeEE
Q 016201 274 PHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKV 328 (393)
Q Consensus 274 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~ 328 (393)
..+++++++++|||+||..... ..+++|+.|+ .++.++.
T Consensus 335 ~~~~av~~~~~iyv~GG~~~~~----------------~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 335 AYGVSVSWNNGVLLIGGETAGG----------------KAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred cceEEEEeCCEEEEEcCCCCCC----------------cEeeeEEEEEEcCCEEEE
Confidence 9889999999999999976432 1367899997 4445543
No 19
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=1.7e-33 Score=262.80 Aligned_cols=239 Identities=17% Similarity=0.198 Sum_probs=182.0
Q ss_pred cccCccEEEECCEEEEEecCCCCC---------CccceEEEEE-CCC-CceEeCCCCCCCCCcceeEEEEeCCEEEEEec
Q 016201 118 PRLDGAAIQIKNLFYVFAGYGSLD---------YVHSHVDVYN-FTD-NKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSG 186 (393)
Q Consensus 118 ~r~~~~~~~~~~~iyv~GG~~~~~---------~~~~~~~~yd-~~~-~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG 186 (393)
.+.++.++++++.|||+||.+..+ ...+++++|+ +.. .+|..+++||.+ |..+++++++++||++||
T Consensus 3 ~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~--r~~~~~~~~~~~lyviGG 80 (323)
T TIGR03548 3 GVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYE--AAYGASVSVENGIYYIGG 80 (323)
T ss_pred ceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCcc--ccceEEEEECCEEEEEcC
Confidence 356678889999999999986543 1335788775 332 379999999875 656677888999999999
Q ss_pred eeCCCCCCCCCeeEEEeCCCCCe----EeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceeEeeeeccccccCC
Q 016201 187 QYGPQCRGPTSRTFVLDSETRKW----DSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKA 262 (393)
Q Consensus 187 ~~~~~~~~~~~~v~~yd~~~~~W----~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~d~~~~~~~ 262 (393)
.++.. .++++++||+.+++| +.+++||.+|..|++++++++|||+||.......+.+++|| +.+++
T Consensus 81 ~~~~~---~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd-------~~~~~ 150 (323)
T TIGR03548 81 SNSSE---RFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFN-------LETQE 150 (323)
T ss_pred CCCCC---CceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEc-------CCCCC
Confidence 86543 378999999999998 78899999999999999999999999975443344444444 79999
Q ss_pred eEEeccCCC-CCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCceEEeC-CCCCeEECCCCC---CCCC
Q 016201 263 WRTEIPIPR-GGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMP---KPNS 337 (393)
Q Consensus 263 W~~~~~~p~-~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~---~~r~ 337 (393)
|+.++++|. +|..+++++++++|||+||.++.. ..++++|| .+++|+.+++|+ .|+.
T Consensus 151 W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~------------------~~~~~~yd~~~~~W~~~~~~~~~~~p~~ 212 (323)
T TIGR03548 151 WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIA------------------YTDGYKYSPKKNQWQKVADPTTDSEPIS 212 (323)
T ss_pred eeECCCCCCCCCCcceEEEECCEEEEEcCCCCcc------------------ccceEEEecCCCeeEECCCCCCCCCcee
Confidence 999998874 677788889999999999986431 24589999 667999998764 4444
Q ss_pred Ccc-eeEEEECCEEEEEcCcCCCCC---------------------------cccceEEEEEEEeecCCCccccccc
Q 016201 338 HIE-CAWVIVNNSIIITGGTTEKHP---------------------------MTKRMILVGEVFQFHLDSLPSLQSR 386 (393)
Q Consensus 338 ~~~-~~~~~~~~~i~v~GG~~~~~~---------------------------~~~~~~~~~~~y~~~~~~W~~~~~~ 386 (393)
... +++++.+++||++||.+.... ....+...+++||+++++|+.+++.
T Consensus 213 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~ 289 (323)
T TIGR03548 213 LLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNS 289 (323)
T ss_pred ccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccc
Confidence 333 334556899999999864321 0011123579999999999998753
No 20
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.97 E-value=6.5e-30 Score=216.48 Aligned_cols=257 Identities=19% Similarity=0.305 Sum_probs=198.4
Q ss_pred CeEEcCCCCccccCccEEEECCEEEEEecCCCCC----CccceEEEEECCCCceEeCCC--------CCC---CCCccee
Q 016201 108 EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLD----YVHSHVDVYNFTDNKWVDRFD--------MPK---DMAHSHL 172 (393)
Q Consensus 108 ~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~----~~~~~~~~yd~~~~~W~~~~~--------~~~---~~~r~~~ 172 (393)
+|+---+--..|-.|+++.++.+||-|||+...+ .-.-+|.++|.++-+|+++++ .|. |..|++|
T Consensus 3 ~WTVHLeGGPrRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGH 82 (392)
T KOG4693|consen 3 TWTVHLEGGPRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGH 82 (392)
T ss_pred eEEEEecCCcccccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCc
Confidence 4544333333577899999999999999974322 112479999999999999875 111 3459999
Q ss_pred EEEEeCCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCC---CCCCCCCCceEEEECCEEEEEccCCC--CCCCCCcc
Q 016201 173 GVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP---PLPSPRYSPATQLWRGRLHVMGGSKE--NRHTPGLE 247 (393)
Q Consensus 173 ~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~~~ 247 (393)
+++.+++++||.||.+... ...+.+++|||++++|.+.. -+|-+|.+|++++.++.+|||||+.. ..+.+++.
T Consensus 83 tvV~y~d~~yvWGGRND~e--gaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h 160 (392)
T KOG4693|consen 83 TVVEYQDKAYVWGGRNDDE--GACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTH 160 (392)
T ss_pred eEEEEcceEEEEcCccCcc--cccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccce
Confidence 9999999999999998754 34899999999999998764 67899999999999999999999864 34555666
Q ss_pred eeEeeeeccccccCCeEEec---cCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCceEEeC-CC
Q 016201 248 HWSIAVKDGKALEKAWRTEI---PIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DE 323 (393)
Q Consensus 248 ~~~~~~~d~~~~~~~W~~~~---~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~ 323 (393)
.++ ..+.+|+.+. ..|+-|-.|+++++++.+|||||..... -+-.+..|.+.+++-.+| .+
T Consensus 161 ~ld-------~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~--------gpfHs~~e~Yc~~i~~ld~~T 225 (392)
T KOG4693|consen 161 VLD-------FATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDES--------GPFHSIHEQYCDTIMALDLAT 225 (392)
T ss_pred eEe-------ccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccC--------CCccchhhhhcceeEEEeccc
Confidence 555 4899999975 3577777789999999999999987543 134456678889999999 77
Q ss_pred CCeEECCC---CCCCCCCcceeEEEECCEEEEEcCcCCCCCcccceEEEEEEEeecCCCccccccc
Q 016201 324 MKWKVLPP---MPKPNSHIECAWVIVNNSIIITGGTTEKHPMTKRMILVGEVFQFHLDSLPSLQSR 386 (393)
Q Consensus 324 ~~W~~~~~---~~~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~y~~~~~~W~~~~~~ 386 (393)
..|...++ .|..|.. +++.++++++|+|||+++.-... ....+.|||.+..|..|..+
T Consensus 226 ~aW~r~p~~~~~P~GRRS--HS~fvYng~~Y~FGGYng~ln~H---fndLy~FdP~t~~W~~I~~~ 286 (392)
T KOG4693|consen 226 GAWTRTPENTMKPGGRRS--HSTFVYNGKMYMFGGYNGTLNVH---FNDLYCFDPKTSMWSVISVR 286 (392)
T ss_pred cccccCCCCCcCCCcccc--cceEEEcceEEEecccchhhhhh---hcceeecccccchheeeecc
Confidence 89998753 4555554 45699999999999997643211 11337999999999988654
No 21
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.96 E-value=3e-28 Score=236.82 Aligned_cols=270 Identities=18% Similarity=0.239 Sum_probs=209.1
Q ss_pred hhHHHHHHHHHhhhccEEEEecCCCCCCCCcccc--eeeeeecCCCceEEecCCCCCccccccceeEEecCCcchhhHHh
Q 016201 18 WFLCVLGLLGAALIADFMWASSSSSFSSSSAHLS--VASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQDAERFL 95 (393)
Q Consensus 18 ~~~~~~~~~~~~~~~~~ly~~GG~~~g~~~~~~~--~~~~~d~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 95 (393)
.....+..|++.++++++|++||...+ ..+. +++.+|..+..|......
T Consensus 56 ~~p~~R~~hs~~~~~~~~~vfGG~~~~---~~~~~~dl~~~d~~~~~w~~~~~~-------------------------- 106 (482)
T KOG0379|consen 56 VGPIPRAGHSAVLIGNKLYVFGGYGSG---DRLTDLDLYVLDLESQLWTKPAAT-------------------------- 106 (482)
T ss_pred CCcchhhccceeEECCEEEEECCCCCC---CccccceeEEeecCCccccccccc--------------------------
Confidence 345789999999999999999998333 3222 255555554444332221
Q ss_pred hcceeeccCCCCCeEEcCCCCccccCccEEEECCEEEEEecCCCCCCccceEEEEECCCCceEeCCCCCC-CCCcceeEE
Q 016201 96 SATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK-DMAHSHLGV 174 (393)
Q Consensus 96 ~~~~~~~~~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~-~~~r~~~~~ 174 (393)
...|.+|.+|++++++++||++||.+.....+++++.||+.+.+|+.+.+... |.+|.+|++
T Consensus 107 -----------------g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~ 169 (482)
T KOG0379|consen 107 -----------------GDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSA 169 (482)
T ss_pred -----------------CCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceE
Confidence 12467999999999999999999998655557899999999999999876655 557999999
Q ss_pred EEeCCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCC---CCCCCCCCceEEEECCEEEEEccCC-CCCCCCCcceeE
Q 016201 175 VSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP---PLPSPRYSPATQLWRGRLHVMGGSK-ENRHTPGLEHWS 250 (393)
Q Consensus 175 ~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~-~~~~~~~~~~~~ 250 (393)
++++++||||||.+.... ..+++++||+++.+|.++. +.|.||.+|++++++++++|+||.. +..+.+++..+|
T Consensus 170 ~~~g~~l~vfGG~~~~~~--~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ld 247 (482)
T KOG0379|consen 170 TVVGTKLVVFGGIGGTGD--SLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILD 247 (482)
T ss_pred EEECCEEEEECCccCccc--ceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEeee
Confidence 999999999999887652 4899999999999999985 6788999999999999999999987 667788888887
Q ss_pred eeeeccccccCCeEEecc---CCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCceEEeC-CCCCe
Q 016201 251 IAVKDGKALEKAWRTEIP---IPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKW 326 (393)
Q Consensus 251 ~~~~d~~~~~~~W~~~~~---~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W 326 (393)
+ .+.+|..+.+ .|.+|+.|..+..+++++++||...... ..+.++|.|| .+..|
T Consensus 248 l-------~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~---------------~~l~~~~~l~~~~~~w 305 (482)
T KOG0379|consen 248 L-------STWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQ---------------EPLGDLYGLDLETLVW 305 (482)
T ss_pred c-------ccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCccccc---------------ccccccccccccccce
Confidence 5 7899997653 6889999999999999999999876310 1367799999 77899
Q ss_pred EECCC----CCCCCCCcceeEEEECC--EEEEEcCcC
Q 016201 327 KVLPP----MPKPNSHIECAWVIVNN--SIIITGGTT 357 (393)
Q Consensus 327 ~~~~~----~~~~r~~~~~~~~~~~~--~i~v~GG~~ 357 (393)
..+.. .|.||..+.+..+...+ ...++||..
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (482)
T KOG0379|consen 306 SKVESVGVVRPSPRLGHAAELIDELGKDGLGILGGNQ 342 (482)
T ss_pred eeeeccccccccccccccceeeccCCccceeeecCcc
Confidence 98753 35666665544333322 355555543
No 22
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.95 E-value=1.9e-26 Score=224.25 Aligned_cols=242 Identities=23% Similarity=0.389 Sum_probs=195.1
Q ss_pred CCCccccCccEEEECCEEEEEecCCCCCCccc-eEEEEECCCCceEeCCC-CCCCCCcceeEEEEeCCEEEEEeceeCCC
Q 016201 114 SAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHS-HVDVYNFTDNKWVDRFD-MPKDMAHSHLGVVSDGRYIYIVSGQYGPQ 191 (393)
Q Consensus 114 ~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~-~~~~yd~~~~~W~~~~~-~~~~~~r~~~~~~~~~~~iyv~GG~~~~~ 191 (393)
..|.+|..|+++.+++++||+||......... +++++|..+..|...+. ...|.+|.++.++.++++||+|||.+...
T Consensus 56 ~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~ 135 (482)
T KOG0379|consen 56 VGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKY 135 (482)
T ss_pred CCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCC
Confidence 46889999999999999999999866554333 69999999999988643 23345699999999999999999988632
Q ss_pred CCCCCCeeEEEeCCCCCeEeCC---CCCCCCCCceEEEECCEEEEEccCCCCC-CCCCcceeEeeeeccccccCCeEEec
Q 016201 192 CRGPTSRTFVLDSETRKWDSIP---PLPSPRYSPATQLWRGRLHVMGGSKENR-HTPGLEHWSIAVKDGKALEKAWRTEI 267 (393)
Q Consensus 192 ~~~~~~~v~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~~~~~~d~~~~~~~W~~~~ 267 (393)
...++++.||+.+++|+.+. ..|.+|.+|++++++++||||||..... ..+++.+|| +++.+|.++.
T Consensus 136 --~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d-------~~~~~W~~~~ 206 (482)
T KOG0379|consen 136 --RNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYD-------LETSTWSELD 206 (482)
T ss_pred --CChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeec-------cccccceecc
Confidence 34889999999999999876 4688999999999999999999987544 455555555 6899999974
Q ss_pred ---cCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCceEEeC-CCCCeEECC---CCCCCCCCcc
Q 016201 268 ---PIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLP---PMPKPNSHIE 340 (393)
Q Consensus 268 ---~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~---~~~~~r~~~~ 340 (393)
+.|.+|.+|++++.+++++++||.+.. +.+++|+|.+| .+.+|..+. .+|.||..|.
T Consensus 207 ~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~----------------~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~ 270 (482)
T KOG0379|consen 207 TQGEAPSPRYGHAMVVVGNKLLVFGGGDDG----------------DVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHS 270 (482)
T ss_pred cCCCCCCCCCCceEEEECCeEEEEeccccC----------------CceecceEeeecccceeeeccccCCCCCCcceee
Confidence 567899999999999999999998832 24789999999 777999654 6888888764
Q ss_pred eeEEEECCEEEEEcCcCCCCC-cccceEEEEEEEeecCCCccccccc
Q 016201 341 CAWVIVNNSIIITGGTTEKHP-MTKRMILVGEVFQFHLDSLPSLQSR 386 (393)
Q Consensus 341 ~~~~~~~~~i~v~GG~~~~~~-~~~~~~~~~~~y~~~~~~W~~~~~~ 386 (393)
. +..+.+++++||...... ... ..+.++.++..|..+...
T Consensus 271 ~--~~~~~~~~l~gG~~~~~~~~l~----~~~~l~~~~~~w~~~~~~ 311 (482)
T KOG0379|consen 271 L--TVSGDHLLLFGGGTDPKQEPLG----DLYGLDLETLVWSKVESV 311 (482)
T ss_pred e--EEECCEEEEEcCCccccccccc----ccccccccccceeeeecc
Confidence 4 699999999999876422 122 336888889999877543
No 23
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.95 E-value=2.7e-26 Score=205.34 Aligned_cols=260 Identities=19% Similarity=0.271 Sum_probs=189.8
Q ss_pred CCCCccccCccEEEE--CCEEEEEecC--CCCC-CccceEEEEECCCCceEeCCCCCCCCCcceeEEEEeC-CEEEEEec
Q 016201 113 PSAPVPRLDGAAIQI--KNLFYVFAGY--GSLD-YVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDG-RYIYIVSG 186 (393)
Q Consensus 113 ~~~~~~r~~~~~~~~--~~~iyv~GG~--~~~~-~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~-~~iyv~GG 186 (393)
.+.|.||+.+++++. .+.|+++||. ++.. ...++++.||..+++|+.+.....|.+|+.|.++++- |.+|+|||
T Consensus 61 ~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGG 140 (521)
T KOG1230|consen 61 VPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGG 140 (521)
T ss_pred CCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEecc
Confidence 457889999988775 5689999995 3322 3568999999999999998655445568888777764 89999999
Q ss_pred eeCCCC---CCCCCeeEEEeCCCCCeEeCC--CCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceeEeeeeccccccC
Q 016201 187 QYGPQC---RGPTSRTFVLDSETRKWDSIP--PLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEK 261 (393)
Q Consensus 187 ~~~~~~---~~~~~~v~~yd~~~~~W~~~~--~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~d~~~~~~ 261 (393)
...... .....++|.||..+++|+++. .-|.+|.+|.+++..++|++|||+... +....|--++|.||..+-
T Consensus 141 EfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~---nr~y~YyNDvy~FdLdty 217 (521)
T KOG1230|consen 141 EFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDS---NRDYIYYNDVYAFDLDTY 217 (521)
T ss_pred ccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecC---CCceEEeeeeEEEeccce
Confidence 754321 123589999999999999986 578999999999999999999998653 222333334444445899
Q ss_pred CeEEecc---CCCCCCceeEEEE-CCEEEEEcCCCCCCCCCCCCCccccccccceecCceEEeCCCC------CeEECC-
Q 016201 262 AWRTEIP---IPRGGPHRACFVF-NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLDDEM------KWKVLP- 330 (393)
Q Consensus 262 ~W~~~~~---~p~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~------~W~~~~- 330 (393)
+|+.+.+ -|.+|+++...+. +|.|||.||+...-.. -....-..++++|.++++. .|+.+.
T Consensus 218 kW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~k--------K~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp 289 (521)
T KOG1230|consen 218 KWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVK--------KDVDKGTRHSDMFLLKPEDGREDKWVWTKVKP 289 (521)
T ss_pred eeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhh--------hhhhcCceeeeeeeecCCcCCCcceeEeeccC
Confidence 9999865 4788888888887 9999999998754211 1112224678899998432 677764
Q ss_pred --CCCCCCCCcceeEEEECCEEEEEcCcCCCCC----cccceEEEEEEEeecCCCccccc
Q 016201 331 --PMPKPNSHIECAWVIVNNSIIITGGTTEKHP----MTKRMILVGEVFQFHLDSLPSLQ 384 (393)
Q Consensus 331 --~~~~~r~~~~~~~~~~~~~i~v~GG~~~~~~----~~~~~~~~~~~y~~~~~~W~~~~ 384 (393)
-.|.||.+++++ +.-+++-++|||..+-.. ....+....+.|+.+.++|...+
T Consensus 290 ~g~kPspRsgfsv~-va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~q 348 (521)
T KOG1230|consen 290 SGVKPSPRSGFSVA-VAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQ 348 (521)
T ss_pred CCCCCCCCCceeEE-EecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHhh
Confidence 478899988764 556779999999876221 11112223479999999997653
No 24
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=1.3e-26 Score=212.19 Aligned_cols=261 Identities=16% Similarity=0.195 Sum_probs=203.3
Q ss_pred hHHHHHHHHHhhhccEEEEecCCCCCCCCcccceeeeeecCCCceEEecCCCCCccccccceeEEecCC-----cchhhH
Q 016201 19 FLCVLGLLGAALIADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKK-----GQDAER 93 (393)
Q Consensus 19 ~~~~~~~~~~~~~~~~ly~~GG~~~g~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~-----~~~~~~ 93 (393)
..+.+-+|.++.+...|.+|||-++| +.+.++.|+-.+++|....--..-|.+-+.+|.+..+.. |+..+.
T Consensus 29 vPrpRHGHRAVaikELiviFGGGNEG----iiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYG 104 (830)
T KOG4152|consen 29 VPRPRHGHRAVAIKELIVIFGGGNEG----IIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYG 104 (830)
T ss_pred CCCccccchheeeeeeEEEecCCccc----chhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEeeec
Confidence 44677889999999999999998666 788999999999999764433333333566666665544 555566
Q ss_pred HhhcceeeccCCCCCeEEcCC-------CCccccCccEEEECCEEEEEecCCCC--------CCccceEEEEECCCC---
Q 016201 94 FLSATFADLPAPDLEWEQMPS-------APVPRLDGAAIQIKNLFYVFAGYGSL--------DYVHSHVDVYNFTDN--- 155 (393)
Q Consensus 94 ~~~~~~~~~~~~~~~W~~~~~-------~~~~r~~~~~~~~~~~iyv~GG~~~~--------~~~~~~~~~yd~~~~--- 155 (393)
.+++++|.+......|+++.+ +|.||.+|+...+++|.|+|||.... ..+++++++.++.-.
T Consensus 105 kYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgv 184 (830)
T KOG4152|consen 105 KYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGV 184 (830)
T ss_pred cccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCce
Confidence 666789888888888988853 67899999999999999999997322 246889999887643
Q ss_pred -ceEeC-CCCCCCCCcceeEEEEe------CCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCC---CCCCCCCCceE
Q 016201 156 -KWVDR-FDMPKDMAHSHLGVVSD------GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP---PLPSPRYSPAT 224 (393)
Q Consensus 156 -~W~~~-~~~~~~~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~---~~p~~r~~~~~ 224 (393)
.|... ..-+.|.+|..|.++.+ ..++||+||+++-. +.++|.+|++|.+|.+.. -.|.||..|++
T Consensus 185 v~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~R----LgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa 260 (830)
T KOG4152|consen 185 VAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCR----LGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSA 260 (830)
T ss_pred EEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccccc----ccceeEEecceeecccccccCCCCCCcccccc
Confidence 48753 22223345777777766 35899999998743 899999999999998875 45788999999
Q ss_pred EEECCEEEEEccCCC--------------CCCCCCcceeEeeeeccccccCCeEEec-------cCCCCCCceeEEEECC
Q 016201 225 QLWRGRLHVMGGSKE--------------NRHTPGLEHWSIAVKDGKALEKAWRTEI-------PIPRGGPHRACFVFND 283 (393)
Q Consensus 225 ~~~~~~iyv~GG~~~--------------~~~~~~~~~~~~~~~d~~~~~~~W~~~~-------~~p~~~~~~~~~~~~~ 283 (393)
.+++|++|||||+-- -.+.++..++++ .++.|+.+- ..|++|.+|++++++.
T Consensus 261 ~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNl-------dt~~W~tl~~d~~ed~tiPR~RAGHCAvAigt 333 (830)
T KOG4152|consen 261 TTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNL-------DTMAWETLLMDTLEDNTIPRARAGHCAVAIGT 333 (830)
T ss_pred eeecceeEEecceeeeeccccccccccceeeeccceeeeee-------cchheeeeeeccccccccccccccceeEEecc
Confidence 999999999999721 135666777776 789998862 3799999999999999
Q ss_pred EEEEEcCCCCC
Q 016201 284 RLFVVGGQEGD 294 (393)
Q Consensus 284 ~iyv~GG~~~~ 294 (393)
++||..|.++.
T Consensus 334 RlYiWSGRDGY 344 (830)
T KOG4152|consen 334 RLYIWSGRDGY 344 (830)
T ss_pred EEEEEeccchh
Confidence 99999999875
No 25
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.92 E-value=2.1e-24 Score=193.32 Aligned_cols=220 Identities=20% Similarity=0.295 Sum_probs=170.1
Q ss_pred cceeeccCCCCCeEEcCC--CCccccCccEEEEC-CEEEEEecCCCCC-----CccceEEEEECCCCceEeCCCCCCCCC
Q 016201 97 ATFADLPAPDLEWEQMPS--APVPRLDGAAIQIK-NLFYVFAGYGSLD-----YVHSHVDVYNFTDNKWVDRFDMPKDMA 168 (393)
Q Consensus 97 ~~~~~~~~~~~~W~~~~~--~~~~r~~~~~~~~~-~~iyv~GG~~~~~-----~~~~~~~~yd~~~~~W~~~~~~~~~~~ 168 (393)
++++.||...++|+++.+ .|.||+.|+++++- +.+|++||.-... ...+++|.+|+.+++|+++..-..|.+
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~ 177 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSP 177 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCC
Confidence 389999999999999854 67889999998875 8999999974332 235899999999999999977666778
Q ss_pred cceeEEEEeCCEEEEEeceeCCC-CCCCCCeeEEEeCCCCCeEeCCC---CCCCCCCceEEEE-CCEEEEEccCCCCCC-
Q 016201 169 HSHLGVVSDGRYIYIVSGQYGPQ-CRGPTSRTFVLDSETRKWDSIPP---LPSPRYSPATQLW-RGRLHVMGGSKENRH- 242 (393)
Q Consensus 169 r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~v~~yd~~~~~W~~~~~---~p~~r~~~~~~~~-~~~iyv~GG~~~~~~- 242 (393)
|++|.+++..++|+||||+.... .+.+.|+||+||+.+-+|+++.+ -|.||.+|++.+. .+.|||.||++....
T Consensus 178 RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~k 257 (521)
T KOG1230|consen 178 RSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVK 257 (521)
T ss_pred CccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhh
Confidence 99999999999999999997643 33568999999999999999974 3789999999998 999999999864321
Q ss_pred ------CCCcceeEeeeecccccc-----CCeEEecc---CCCCCCceeEEEE-CCEEEEEcCCCCCCCCCCCCCccccc
Q 016201 243 ------TPGLEHWSIAVKDGKALE-----KAWRTEIP---IPRGGPHRACFVF-NDRLFVVGGQEGDFMAKPGSPIFKCS 307 (393)
Q Consensus 243 ------~~~~~~~~~~~~d~~~~~-----~~W~~~~~---~p~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~ 307 (393)
....+.|.+ +|.. -+|+.+.| -|.+|.++++++. +++-|.|||.-.-.. .+ .
T Consensus 258 K~~dKG~~hsDmf~L-----~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~ee---ee-----E 324 (521)
T KOG1230|consen 258 KDVDKGTRHSDMFLL-----KPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEE---EE-----E 324 (521)
T ss_pred hhhhcCceeeeeeee-----cCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccc---cc-----h
Confidence 112233433 2444 57888765 4778888888776 669999999754210 00 1
Q ss_pred cccceecCceEEeC-CCCCeEEC
Q 016201 308 RRHEVVYGDVYMLD-DEMKWKVL 329 (393)
Q Consensus 308 ~~~~~~~~~v~~yd-~~~~W~~~ 329 (393)
.-...+.+++|.|| ..++|...
T Consensus 325 sl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 325 SLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred hhhhhhhhhhhheecccchhhHh
Confidence 11234789999999 77899764
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.91 E-value=5.6e-23 Score=188.48 Aligned_cols=285 Identities=15% Similarity=0.199 Sum_probs=197.2
Q ss_pred CCceEEecCCCCC-ccccccceeEEecCC----cchhhHHhhcceeeccCCCCCeEEc---CCCCccccCccEEEECCEE
Q 016201 60 KSGVVVIPHVNAT-KIDRQRESVAVIDKK----GQDAERFLSATFADLPAPDLEWEQM---PSAPVPRLDGAAIQIKNLF 131 (393)
Q Consensus 60 ~~~W~~~~~~~~~-~~~r~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~W~~~---~~~~~~r~~~~~~~~~~~i 131 (393)
--.|..+.....| |..|+.|-++++... |.... .+.++++.||..+++|..- ...|.+...|..+..+.+|
T Consensus 16 ~~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNE-GiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtri 94 (830)
T KOG4152|consen 16 VVRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNE-GIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRI 94 (830)
T ss_pred ccceEEEecccCCCCCccccchheeeeeeEEEecCCcc-cchhhhhhhccccceeecchhcCCCCCchhhcceEecCceE
Confidence 3467776654332 244777666655443 22222 2344899999999999653 3477788888899999999
Q ss_pred EEEecCCCCCCccceEEEEECCCCceEeCCCC-----CCCCCcceeEEEEeCCEEEEEeceeCCCC------CCCCCeeE
Q 016201 132 YVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDM-----PKDMAHSHLGVVSDGRYIYIVSGQYGPQC------RGPTSRTF 200 (393)
Q Consensus 132 yv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~-----~~~~~r~~~~~~~~~~~iyv~GG~~~~~~------~~~~~~v~ 200 (393)
|+|||+.+-..+.++++.+....-+|+++.+- +.|-+|-+|+..+++++-|+|||...... -.+++++|
T Consensus 95 lvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY 174 (830)
T KOG4152|consen 95 LVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLY 174 (830)
T ss_pred EEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceE
Confidence 99999987777777776666666677777532 23456999999999999999999744221 13478898
Q ss_pred EEeCCCCC----eEeC---CCCCCCCCCceEEEE------CCEEEEEccCCCCCCCCCcceeEeeeeccccccCCeEEe-
Q 016201 201 VLDSETRK----WDSI---PPLPSPRYSPATQLW------RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTE- 266 (393)
Q Consensus 201 ~yd~~~~~----W~~~---~~~p~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~~~~~~~~~~d~~~~~~~W~~~- 266 (393)
..++.... |... ..+|.+|..|+++++ ..+|||+||..+.+ ..+....| .++..|.+.
T Consensus 175 ~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~R-LgDLW~Ld-------l~Tl~W~kp~ 246 (830)
T KOG4152|consen 175 ILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCR-LGDLWTLD-------LDTLTWNKPS 246 (830)
T ss_pred EEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccccc-ccceeEEe-------cceeeccccc
Confidence 88877443 8765 378999999999988 44899999998654 33444444 478899885
Q ss_pred ----ccCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCceEEeC-CCCCeEECC-----CCCCCC
Q 016201 267 ----IPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLP-----PMPKPN 336 (393)
Q Consensus 267 ----~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~-----~~~~~r 336 (393)
+|||+.. |+++.+++|+|||||.-..-.-+- .....+..=..++.+-++| .++.|+.+- +-..||
T Consensus 247 ~~G~~PlPRSL--Hsa~~IGnKMyvfGGWVPl~~~~~---~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR 321 (830)
T KOG4152|consen 247 LSGVAPLPRSL--HSATTIGNKMYVFGGWVPLVMDDV---KVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPR 321 (830)
T ss_pred ccCCCCCCccc--ccceeecceeEEecceeeeecccc---ccccccceeeeccceeeeeecchheeeeeecccccccccc
Confidence 4566655 589999999999999753210000 0001111112456677788 778998752 333666
Q ss_pred CCcceeEEEECCEEEEEcCcCC
Q 016201 337 SHIECAWVIVNNSIIITGGTTE 358 (393)
Q Consensus 337 ~~~~~~~~~~~~~i~v~GG~~~ 358 (393)
.+.++|++.++.++||-.|.++
T Consensus 322 ~RAGHCAvAigtRlYiWSGRDG 343 (830)
T KOG4152|consen 322 ARAGHCAVAIGTRLYIWSGRDG 343 (830)
T ss_pred ccccceeEEeccEEEEEeccch
Confidence 6677788999999999999764
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.86 E-value=2.6e-20 Score=165.09 Aligned_cols=258 Identities=18% Similarity=0.234 Sum_probs=183.8
Q ss_pred ceeeccCC--CCCeEEcCCCC-ccccCccEEEECCEEEEEecCCCCC----CccceEEEEECCCCceEeCCCCCCCCCcc
Q 016201 98 TFADLPAP--DLEWEQMPSAP-VPRLDGAAIQIKNLFYVFAGYGSLD----YVHSHVDVYNFTDNKWVDRFDMPKDMAHS 170 (393)
Q Consensus 98 ~~~~~~~~--~~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~~----~~~~~~~~yd~~~~~W~~~~~~~~~~~r~ 170 (393)
.++..|.. ...|++++..| .+|.+...++++++|||+||..... ...+++++|||.+|+|.++..... +...
T Consensus 59 afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP-~gl~ 137 (381)
T COG3055 59 AFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSP-TGLV 137 (381)
T ss_pred cceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccccc-cccc
Confidence 56666644 45899999977 5799999999999999999985443 356899999999999999876432 2355
Q ss_pred eeEEEEeCC-EEEEEeceeCCC-------------------------------CCCCCCeeEEEeCCCCCeEeCCCCC-C
Q 016201 171 HLGVVSDGR-YIYIVSGQYGPQ-------------------------------CRGPTSRTFVLDSETRKWDSIPPLP-S 217 (393)
Q Consensus 171 ~~~~~~~~~-~iyv~GG~~~~~-------------------------------~~~~~~~v~~yd~~~~~W~~~~~~p-~ 217 (393)
++.++.+++ +||++||.+..- .+....++..|||++++|+.+...| .
T Consensus 138 G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~ 217 (381)
T COG3055 138 GASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFY 217 (381)
T ss_pred cceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCccc
Confidence 777777777 999999985110 1223577899999999999999777 4
Q ss_pred CCCCceEEEECCEEEEEccCCCCC-CCCCcceeEeeeeccccccCCeEEeccCCCCCCc-------eeEEEECCEEEEEc
Q 016201 218 PRYSPATQLWRGRLHVMGGSKENR-HTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPH-------RACFVFNDRLFVVG 289 (393)
Q Consensus 218 ~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~~~~~~d~~~~~~~W~~~~~~p~~~~~-------~~~~~~~~~iyv~G 289 (393)
++++.+.+.-+|++.++-|.-... ....+.+.++ .-...+|..++++|.+... +-.-..++.+.+.|
T Consensus 218 ~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~-----~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~G 292 (381)
T COG3055 218 GNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADF-----GGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAG 292 (381)
T ss_pred CccCcceeecCCeEEEEcceecCCccccceeEEEe-----ccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEec
Confidence 677766666688899998865322 2334444444 2367789999776533221 12223578899999
Q ss_pred CCCCCCCC--CCCCCccccccccceecCceEEeCCCCCeEECCCCCCCCCCcceeEEEECCEEEEEcCcCCCCCccc
Q 016201 290 GQEGDFMA--KPGSPIFKCSRRHEVVYGDVYMLDDEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTEKHPMTK 364 (393)
Q Consensus 290 G~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~yd~~~~W~~~~~~~~~r~~~~~~~~~~~~~i~v~GG~~~~~~~~~ 364 (393)
|-+-.+.. -..+..+.+..-...+.++||.+| .+.|+.+..||.++... ..+..+++||++||.+..+....
T Consensus 293 GAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d-~g~Wk~~GeLp~~l~YG--~s~~~nn~vl~IGGE~~~Gka~~ 366 (381)
T COG3055 293 GANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD-NGSWKIVGELPQGLAYG--VSLSYNNKVLLIGGETSGGKATT 366 (381)
T ss_pred CCCChhHHHHHHhcccccccchhhhhhceEEEEc-CCceeeecccCCCccce--EEEecCCcEEEEccccCCCeeee
Confidence 96633211 111233333334556889999996 77999999999987753 34788999999999988776554
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.76 E-value=4.2e-17 Score=144.83 Aligned_cols=254 Identities=20% Similarity=0.295 Sum_probs=179.8
Q ss_pred EEcCCCCccccCccEEEECCEEEEEecCCCCCCccceEEEEECC--CCceEeCCCCCCCCCcceeEEEEeCCEEEEEece
Q 016201 110 EQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFT--DNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQ 187 (393)
Q Consensus 110 ~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~--~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~ 187 (393)
.++|.+|.+-...+.+.+++.+||-=|..+. +.+..|++ ...|++++..|.. +|.....++++++||+|||.
T Consensus 28 ~~lPdlPvg~KnG~Ga~ig~~~YVGLGs~G~-----afy~ldL~~~~k~W~~~a~FpG~-~rnqa~~a~~~~kLyvFgG~ 101 (381)
T COG3055 28 GQLPDLPVGFKNGAGALIGDTVYVGLGSAGT-----AFYVLDLKKPGKGWTKIADFPGG-ARNQAVAAVIGGKLYVFGGY 101 (381)
T ss_pred ccCCCCCccccccccceecceEEEEeccCCc-----cceehhhhcCCCCceEcccCCCc-ccccchheeeCCeEEEeecc
Confidence 4568888887777778889999997663332 34555554 4689999999986 58899999999999999998
Q ss_pred eCCCC--CCCCCeeEEEeCCCCCeEeCCC-CCCCCCCceEEEECC-EEEEEccCCCCC----------------------
Q 016201 188 YGPQC--RGPTSRTFVLDSETRKWDSIPP-LPSPRYSPATQLWRG-RLHVMGGSKENR---------------------- 241 (393)
Q Consensus 188 ~~~~~--~~~~~~v~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~~-~iyv~GG~~~~~---------------------- 241 (393)
..... ....+++++|||.+++|+++.. .|..-..+.++.+++ +||++||.+...
T Consensus 102 Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~ 181 (381)
T COG3055 102 GKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKII 181 (381)
T ss_pred ccCCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHH
Confidence 65433 2346899999999999999874 466677888888888 999999964321
Q ss_pred -----CCCCcceeEeeeeccccccCCeEEeccCCC-CCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecC
Q 016201 242 -----HTPGLEHWSIAVKDGKALEKAWRTEIPIPR-GGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYG 315 (393)
Q Consensus 242 -----~~~~~~~~~~~~~d~~~~~~~W~~~~~~p~-~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (393)
..+....|+-++..|+|++++|+.+...|. ++++++.+.-++++.++-|.-.+.. . +.
T Consensus 182 ~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGL-----------R-----t~ 245 (381)
T COG3055 182 AHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPGL-----------R-----TA 245 (381)
T ss_pred HHHhCCCHHHhcccccccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCCc-----------c-----cc
Confidence 123345667778888999999999987663 4444444555777999998765431 1 34
Q ss_pred ceEEeC-C-CC-CeEECCCCCCCCCCcc--ee---EEEECCEEEEEcCcCCCC-------------C-cccceEEEEEEE
Q 016201 316 DVYMLD-D-EM-KWKVLPPMPKPNSHIE--CA---WVIVNNSIIITGGTTEKH-------------P-MTKRMILVGEVF 373 (393)
Q Consensus 316 ~v~~yd-~-~~-~W~~~~~~~~~r~~~~--~~---~~~~~~~i~v~GG~~~~~-------------~-~~~~~~~~~~~y 373 (393)
.+++++ . .+ +|..+.++|.|..... .+ .-..++.+++.||..-.+ + ..+.|.. ++|
T Consensus 246 ~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~--~Vy 323 (381)
T COG3055 246 EVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNS--EVY 323 (381)
T ss_pred ceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhc--eEE
Confidence 477777 4 33 9999998887765321 11 123478899999864211 1 3445544 455
Q ss_pred eecCCCcccccccc
Q 016201 374 QFHLDSLPSLQSRF 387 (393)
Q Consensus 374 ~~~~~~W~~~~~~~ 387 (393)
-.+.+.|+.++...
T Consensus 324 ~~d~g~Wk~~GeLp 337 (381)
T COG3055 324 IFDNGSWKIVGELP 337 (381)
T ss_pred EEcCCceeeecccC
Confidence 55599999886543
No 29
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.36 E-value=3.1e-13 Score=124.76 Aligned_cols=183 Identities=16% Similarity=0.213 Sum_probs=132.1
Q ss_pred CCeEEcCCC----------CccccCccEEEECC--EEEEEecCCCCCCccceEEEEECCCCceEeCCCCC-CCCCcceeE
Q 016201 107 LEWEQMPSA----------PVPRLDGAAIQIKN--LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMP-KDMAHSHLG 173 (393)
Q Consensus 107 ~~W~~~~~~----------~~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~~~r~~~~ 173 (393)
.+|.+.+.. |..|.+|.++.-.+ -||+.||+++.+. +.+.|.|+...+.|..+..-. .|-.|.+|.
T Consensus 239 ~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~-l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHR 317 (723)
T KOG2437|consen 239 PRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQD-LADFWAYSVKENQWTCINRDTEGPGARSCHR 317 (723)
T ss_pred ccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchh-HHHHHhhcCCcceeEEeecCCCCCcchhhhh
Confidence 478777542 45688999998765 8999999999876 588999999999999885432 344688998
Q ss_pred EEEeCC--EEEEEeceeCCC---CCCCCCeeEEEeCCCCCeEeCC------CCCCCCCCceEEEECCE--EEEEccCCCC
Q 016201 174 VVSDGR--YIYIVSGQYGPQ---CRGPTSRTFVLDSETRKWDSIP------PLPSPRYSPATQLWRGR--LHVMGGSKEN 240 (393)
Q Consensus 174 ~~~~~~--~iyv~GG~~~~~---~~~~~~~v~~yd~~~~~W~~~~------~~p~~r~~~~~~~~~~~--iyv~GG~~~~ 240 (393)
++..-. ++|++|-+-+.. .....+++|+||..++.|..+. .-|...+.|.+++..++ |||+||+.-.
T Consensus 318 MVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~ 397 (723)
T KOG2437|consen 318 MVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILT 397 (723)
T ss_pred hhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeecc
Confidence 888755 999999774432 2234689999999999999875 34667889999999888 9999998642
Q ss_pred CCCCCcceeEeeeeccccccCCeEEeccC----------CCCCCce--eEEEECCEEEEEcCCCCC
Q 016201 241 RHTPGLEHWSIAVKDGKALEKAWRTEIPI----------PRGGPHR--ACFVFNDRLFVVGGQEGD 294 (393)
Q Consensus 241 ~~~~~~~~~~~~~~d~~~~~~~W~~~~~~----------p~~~~~~--~~~~~~~~iyv~GG~~~~ 294 (393)
. ...+|. -.|.|+.....|..+..- -..|.++ ..+.-+.++|++||....
T Consensus 398 ~---~e~~f~-GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~ 459 (723)
T KOG2437|consen 398 C---NEPQFS-GLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSK 459 (723)
T ss_pred C---CCcccc-ceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccc
Confidence 2 112221 134444688889775421 1233333 345568889999997654
No 30
>PF13964 Kelch_6: Kelch motif
Probab=99.35 E-value=2.8e-12 Score=84.47 Aligned_cols=49 Identities=29% Similarity=0.540 Sum_probs=45.1
Q ss_pred cccCccEEEECCEEEEEecCCCCCCccceEEEEECCCCceEeCCCCCCC
Q 016201 118 PRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKD 166 (393)
Q Consensus 118 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~ 166 (393)
||..|++++++++|||+||.......++++++||+++++|+++++||.|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~p 49 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTP 49 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCC
Confidence 6899999999999999999988556679999999999999999999985
No 31
>PF13964 Kelch_6: Kelch motif
Probab=99.30 E-value=7.1e-12 Score=82.51 Aligned_cols=49 Identities=29% Similarity=0.539 Sum_probs=44.6
Q ss_pred cceeEEEEeCCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCCCCCCC
Q 016201 169 HSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPR 219 (393)
Q Consensus 169 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r 219 (393)
|.++++++++++|||+||.... ....+++++||+++++|+++++||.+|
T Consensus 2 R~~~s~v~~~~~iyv~GG~~~~--~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 2 RYGHSAVVVGGKIYVFGGYDNS--GKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CccCEEEEECCEEEEECCCCCC--CCccccEEEEcCCCCcEEECCCCCCCC
Confidence 7889999999999999998775 255899999999999999999999887
No 32
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.21 E-value=1.5e-11 Score=79.83 Aligned_cols=47 Identities=34% Similarity=0.592 Sum_probs=43.2
Q ss_pred cccCccEEEECCEEEEEecCCCCCCccceEEEEECCCCceEeCCCCC
Q 016201 118 PRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMP 164 (393)
Q Consensus 118 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~ 164 (393)
||..+++++++++|||+||.+.....++++++||+.+++|+++++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 68999999999999999999986677899999999999999999886
No 33
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.17 E-value=7.3e-12 Score=115.81 Aligned_cols=180 Identities=14% Similarity=0.169 Sum_probs=126.6
Q ss_pred CCceEEecCCC-------CCccccccceeEEecCC-------cchhhHHhhcceeeccCCCCCeEEcC---CCCccccCc
Q 016201 60 KSGVVVIPHVN-------ATKIDRQRESVAVIDKK-------GQDAERFLSATFADLPAPDLEWEQMP---SAPVPRLDG 122 (393)
Q Consensus 60 ~~~W~~~~~~~-------~~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~W~~~~---~~~~~r~~~ 122 (393)
+..|.+++.-. ..|..|..|-++.-.+. |-++-..+. ++|.|+...+.|...- ..|..|..|
T Consensus 238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~-DFW~Y~v~e~~W~~iN~~t~~PG~RsCH 316 (723)
T KOG2437|consen 238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLA-DFWAYSVKENQWTCINRDTEGPGARSCH 316 (723)
T ss_pred cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHH-HHHhhcCCcceeEEeecCCCCCcchhhh
Confidence 44687776654 33444666665554442 445555566 8999999999997764 378889999
Q ss_pred cEEEEC--CEEEEEecCCCCC-----CccceEEEEECCCCceEeCCC--C--CCCCCcceeEEEEeCCE--EEEEeceeC
Q 016201 123 AAIQIK--NLFYVFAGYGSLD-----YVHSHVDVYNFTDNKWVDRFD--M--PKDMAHSHLGVVSDGRY--IYIVSGQYG 189 (393)
Q Consensus 123 ~~~~~~--~~iyv~GG~~~~~-----~~~~~~~~yd~~~~~W~~~~~--~--~~~~~r~~~~~~~~~~~--iyv~GG~~~ 189 (393)
.++..- .|||++|-+-+.. ...+++|+||..++.|..+.- - ..|.....|.+++.+.+ |||+||..-
T Consensus 317 RMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~ 396 (723)
T KOG2437|consen 317 RMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRIL 396 (723)
T ss_pred hhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeec
Confidence 998764 4999999874432 345799999999999998741 1 22345778888888877 999999865
Q ss_pred CCCCCCCCeeEEEeCCCCCeEeCCCC----------CCCCCCceEE--EECCEEEEEccCCCC
Q 016201 190 PQCRGPTSRTFVLDSETRKWDSIPPL----------PSPRYSPATQ--LWRGRLHVMGGSKEN 240 (393)
Q Consensus 190 ~~~~~~~~~v~~yd~~~~~W~~~~~~----------p~~r~~~~~~--~~~~~iyv~GG~~~~ 240 (393)
........-++.||.....|..+... ...|-+|.+- .-++++|++||....
T Consensus 397 ~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~ 459 (723)
T KOG2437|consen 397 TCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSK 459 (723)
T ss_pred cCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccc
Confidence 43323357799999999999887521 1234455543 447789999997543
No 34
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.03 E-value=3.2e-10 Score=73.53 Aligned_cols=47 Identities=36% Similarity=0.695 Sum_probs=41.8
Q ss_pred CcceeEEEEeCCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCCCC
Q 016201 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLP 216 (393)
Q Consensus 168 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p 216 (393)
+|.++++++++++|||+||.+... ..++++++||+++++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~--~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNN--QPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTS--SBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccC--ceeeeEEEEeCCCCEEEEcCCCC
Confidence 388999999999999999998832 55899999999999999999886
No 35
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=99.03 E-value=7.1e-10 Score=72.48 Aligned_cols=47 Identities=28% Similarity=0.515 Sum_probs=41.4
Q ss_pred cccCccEEEECCEEEEEecC--CCCCCccceEEEEECCCCceEeCCCCC
Q 016201 118 PRLDGAAIQIKNLFYVFAGY--GSLDYVHSHVDVYNFTDNKWVDRFDMP 164 (393)
Q Consensus 118 ~r~~~~~~~~~~~iyv~GG~--~~~~~~~~~~~~yd~~~~~W~~~~~~~ 164 (393)
||..|++++++++|||+||. +......+++++||+++++|++++++|
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 68899999999999999999 444456789999999999999998875
No 36
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.99 E-value=4.7e-10 Score=73.43 Aligned_cols=47 Identities=30% Similarity=0.544 Sum_probs=32.2
Q ss_pred cccCccEEEE-CCEEEEEecCCCCCCccceEEEEECCCCceEeCCCCC
Q 016201 118 PRLDGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMP 164 (393)
Q Consensus 118 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~ 164 (393)
||.+|+++.+ +++|||+||.+.....++++++||+.+++|++++++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 6899999998 5899999999887667899999999999999998876
No 37
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.98 E-value=1.2e-09 Score=71.33 Aligned_cols=49 Identities=24% Similarity=0.488 Sum_probs=42.5
Q ss_pred CCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCCCCCCCCCceEEEE
Q 016201 178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW 227 (393)
Q Consensus 178 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 227 (393)
+++|||+||.+... ...++++++||+.+++|++++++|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~-~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDG-GTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCC-CCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 58999999998422 25589999999999999999999999999999864
No 38
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.93 E-value=3.2e-09 Score=69.33 Aligned_cols=49 Identities=20% Similarity=0.384 Sum_probs=40.9
Q ss_pred CcceeEEEEeCCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCCCC
Q 016201 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLP 216 (393)
Q Consensus 168 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p 216 (393)
+|.+|++++++++|||+||..........+++++||+++++|++++++|
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 3789999999999999999922222245899999999999999999875
No 39
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.87 E-value=7.2e-09 Score=67.66 Aligned_cols=48 Identities=27% Similarity=0.398 Sum_probs=40.8
Q ss_pred CCEEEEEecCC-CCCCccceEEEEECCCCceEeCCCCCCCCCcceeEEEEe
Q 016201 128 KNLFYVFAGYG-SLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD 177 (393)
Q Consensus 128 ~~~iyv~GG~~-~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~ 177 (393)
+++|||+||.+ .....++++++||+.+++|++++++|. +|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~--~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPP--PRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCC--CccceEEEEC
Confidence 57899999998 445678999999999999999988877 4888888753
No 40
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.81 E-value=6.3e-09 Score=68.01 Aligned_cols=46 Identities=26% Similarity=0.551 Sum_probs=30.6
Q ss_pred cceeEEEEe-CCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCCCC
Q 016201 169 HSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLP 216 (393)
Q Consensus 169 r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p 216 (393)
|.+|+++.+ +++|||+||.+... ..++++++||+++++|++++++|
T Consensus 2 R~~h~~~~~~~~~i~v~GG~~~~~--~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 2 RYGHSAVSIGDNSIYVFGGRDSSG--SPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp -BS-EEEEE-TTEEEEE--EEE-T--EE---EEEEETTTTEEEE--SS-
T ss_pred cceEEEEEEeCCeEEEECCCCCCC--cccCCEEEEECCCCEEEECCCCC
Confidence 778888877 58999999998864 34899999999999999998887
No 41
>smart00612 Kelch Kelch domain.
Probab=98.81 E-value=7.7e-09 Score=66.88 Aligned_cols=47 Identities=34% Similarity=0.624 Sum_probs=41.2
Q ss_pred EEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCCCCCCCCCceEEEECC
Q 016201 180 YIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRG 229 (393)
Q Consensus 180 ~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~ 229 (393)
+||++||.... ...+++++||+.+++|+.+++||.+|..++++++++
T Consensus 1 ~iyv~GG~~~~---~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG---QRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC---ceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 48999998652 347899999999999999999999999999988764
No 42
>smart00612 Kelch Kelch domain.
Probab=98.72 E-value=2.4e-08 Score=64.48 Aligned_cols=47 Identities=30% Similarity=0.419 Sum_probs=39.0
Q ss_pred EEEEEecCCCCCCccceEEEEECCCCceEeCCCCCCCCCcceeEEEEeCC
Q 016201 130 LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGR 179 (393)
Q Consensus 130 ~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~ 179 (393)
+|||+||.... ..++++++||+.+++|+.+++|+.+ |..++++++++
T Consensus 1 ~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~~~~--r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG-QRLKSVEVYDPETNKWTPLPSMPTP--RSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC-ceeeeEEEECCCCCeEccCCCCCCc--cccceEEEeCC
Confidence 48999998753 4568999999999999999999874 77888777764
No 43
>PF13854 Kelch_5: Kelch motif
Probab=98.58 E-value=1.4e-07 Score=59.23 Aligned_cols=41 Identities=24% Similarity=0.494 Sum_probs=36.1
Q ss_pred CCccccCccEEEECCEEEEEecCCC-CCCccceEEEEECCCC
Q 016201 115 APVPRLDGAAIQIKNLFYVFAGYGS-LDYVHSHVDVYNFTDN 155 (393)
Q Consensus 115 ~~~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~yd~~~~ 155 (393)
+|.+|..|++++++++|||+||... .....+++|+||+.+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 4889999999999999999999984 5667899999998763
No 44
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.56 E-value=8.1e-06 Score=71.78 Aligned_cols=154 Identities=17% Similarity=0.251 Sum_probs=96.5
Q ss_pred ceEEEEECCCCceEeCCCCCCCCCcceeEEEEeCCEEEEEeceeCCCCCCCCCeeEEEeCCC----CCeEeCC-CCCCCC
Q 016201 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSET----RKWDSIP-PLPSPR 219 (393)
Q Consensus 145 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~----~~W~~~~-~~p~~r 219 (393)
.....||+.+++++.+....... .++ .+..-+|.+.++||.... ...+..|+|.+ ..|.+.+ .|..+|
T Consensus 46 a~s~~yD~~tn~~rpl~v~td~F-CSg-g~~L~dG~ll~tGG~~~G-----~~~ir~~~p~~~~~~~~w~e~~~~m~~~R 118 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTVQTDTF-CSG-GAFLPDGRLLQTGGDNDG-----NKAIRIFTPCTSDGTCDWTESPNDMQSGR 118 (243)
T ss_pred EEEEEEecCCCcEEeccCCCCCc-ccC-cCCCCCCCEEEeCCCCcc-----ccceEEEecCCCCCCCCceECcccccCCC
Confidence 34667999999999876433221 212 233458899999997542 45577788876 5798876 588999
Q ss_pred CCceEEEE-CCEEEEEccCCCCCCCCCcceeEeeeeccccccCCeEEec----cCCCCCCceeEEEECCEEEEEcCCCCC
Q 016201 220 YSPATQLW-RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEI----PIPRGGPHRACFVFNDRLFVVGGQEGD 294 (393)
Q Consensus 220 ~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~----~~p~~~~~~~~~~~~~~iyv~GG~~~~ 294 (393)
-..++..+ |++++|+||.... ..|.|.-..- .+....|..+. ..+...+-+....-+|+||+++...
T Consensus 119 WYpT~~~L~DG~vlIvGG~~~~----t~E~~P~~~~--~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~-- 190 (243)
T PF07250_consen 119 WYPTATTLPDGRVLIVGGSNNP----TYEFWPPKGP--GPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG-- 190 (243)
T ss_pred ccccceECCCCCEEEEeCcCCC----cccccCCccC--CCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--
Confidence 98888766 8899999998732 2222210000 00111222222 2344555556666799999999753
Q ss_pred CCCCCCCCccccccccceecCceEEeC-CCCCe-EECCCCCCC
Q 016201 295 FMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKW-KVLPPMPKP 335 (393)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W-~~~~~~~~~ 335 (393)
...|| ..+++ +.++.+|..
T Consensus 191 ----------------------s~i~d~~~n~v~~~lP~lPg~ 211 (243)
T PF07250_consen 191 ----------------------SIIYDYKTNTVVRTLPDLPGG 211 (243)
T ss_pred ----------------------cEEEeCCCCeEEeeCCCCCCC
Confidence 35567 55655 778887753
No 45
>PLN02772 guanylate kinase
Probab=98.45 E-value=1.5e-06 Score=81.00 Aligned_cols=87 Identities=16% Similarity=0.254 Sum_probs=66.9
Q ss_pred CccccCccEEEECCEEEEEecCCCCCCccceEEEEECCCCceEeCCCC-CCCCCcceeEEEEe-CCEEEEEeceeCCCCC
Q 016201 116 PVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDM-PKDMAHSHLGVVSD-GRYIYIVSGQYGPQCR 193 (393)
Q Consensus 116 ~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~-~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~ 193 (393)
..|+..++++.+++++||+||.++.....+.+++||..+++|....-+ ..|.+|.+|+++++ +++|+|+++..+.
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~--- 98 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP--- 98 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC---
Confidence 458889999999999999999877554678999999999999975433 22446888888887 6899999865432
Q ss_pred CCCCeeEEEeCCCC
Q 016201 194 GPTSRTFVLDSETR 207 (393)
Q Consensus 194 ~~~~~v~~yd~~~~ 207 (393)
..++|.....|.
T Consensus 99 --~~~~w~l~~~t~ 110 (398)
T PLN02772 99 --DDSIWFLEVDTP 110 (398)
T ss_pred --ccceEEEEcCCH
Confidence 355777666553
No 46
>PLN02772 guanylate kinase
Probab=98.37 E-value=2.6e-06 Score=79.46 Aligned_cols=69 Identities=19% Similarity=0.252 Sum_probs=58.8
Q ss_pred CcceeEEEEeCCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCC---CCCCCCCCceEEEE-CCEEEEEccCC
Q 016201 168 AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP---PLPSPRYSPATQLW-RGRLHVMGGSK 238 (393)
Q Consensus 168 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~---~~p~~r~~~~~~~~-~~~iyv~GG~~ 238 (393)
++..++++++++++||+||.+... ...+.+++||+.+.+|.... +.|.+|.+|+++++ +++|+|+++..
T Consensus 24 ~~~~~tav~igdk~yv~GG~~d~~--~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~ 96 (398)
T PLN02772 24 PKNRETSVTIGDKTYVIGGNHEGN--TLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGS 96 (398)
T ss_pred CCCcceeEEECCEEEEEcccCCCc--cccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCC
Confidence 377889999999999999977643 23789999999999998764 67899999999988 68999998764
No 47
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.30 E-value=0.00026 Score=62.67 Aligned_cols=182 Identities=14% Similarity=0.205 Sum_probs=108.4
Q ss_pred ceeeccCCCCCeEEcCCCCccccC--c--cEEEECC-----EEEEEecCCCCCCccceEEEEECCCCceEeCCCCCCCCC
Q 016201 98 TFADLPAPDLEWEQMPSAPVPRLD--G--AAIQIKN-----LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMA 168 (393)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~~~~r~~--~--~~~~~~~-----~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~ 168 (393)
.+...||.+.+|..+++++.++.. . .....+. ||..+....... ....+++|+..+++|+.+...+....
T Consensus 15 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~-~~~~~~Vys~~~~~Wr~~~~~~~~~~ 93 (230)
T TIGR01640 15 RLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNR-NQSEHQVYTLGSNSWRTIECSPPHHP 93 (230)
T ss_pred cEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCC-CCccEEEEEeCCCCccccccCCCCcc
Confidence 788999999999999875543211 1 1111221 555554432111 23568999999999999874332211
Q ss_pred cceeEEEEeCCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCCCCCCC----CCceEEEECCEEEEEccCCCCCCCC
Q 016201 169 HSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPR----YSPATQLWRGRLHVMGGSKENRHTP 244 (393)
Q Consensus 169 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r----~~~~~~~~~~~iyv~GG~~~~~~~~ 244 (393)
... ..+.++|.+|-+.-..... ....+..||..+++|++.-++|..+ ....++.++++|.++..... ..
T Consensus 94 ~~~-~~v~~~G~lyw~~~~~~~~---~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~---~~ 166 (230)
T TIGR01640 94 LKS-RGVCINGVLYYLAYTLKTN---PDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKD---TN 166 (230)
T ss_pred ccC-CeEEECCEEEEEEEECCCC---CcEEEEEEEcccceEeeeeecCccccccccceEEEEECCEEEEEEecCC---CC
Confidence 112 2667899999887432211 1236999999999999622344332 23456778899988865432 23
Q ss_pred CcceeEeeeeccccccCCeEEeccCC-----CCC--CceeEEEECCEEEEEcCC
Q 016201 245 GLEHWSIAVKDGKALEKAWRTEIPIP-----RGG--PHRACFVFNDRLFVVGGQ 291 (393)
Q Consensus 245 ~~~~~~~~~~d~~~~~~~W~~~~~~p-----~~~--~~~~~~~~~~~iyv~GG~ 291 (393)
..+.|.++-| ....|++.-.++ .-. .....+..+++|++....
T Consensus 167 ~~~IWvl~d~----~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~ 216 (230)
T TIGR01640 167 NFDLWVLNDA----GKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCED 216 (230)
T ss_pred cEEEEEECCC----CCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCC
Confidence 4777776422 234598854332 111 123456668888887653
No 48
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.24 E-value=0.0004 Score=61.49 Aligned_cols=198 Identities=13% Similarity=0.111 Sum_probs=110.1
Q ss_pred ceEEEEECCCCceEeCCCCCCCC---CcceeEEEEe----CCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCCCCC
Q 016201 145 SHVDVYNFTDNKWVDRFDMPKDM---AHSHLGVVSD----GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPS 217 (393)
Q Consensus 145 ~~~~~yd~~~~~W~~~~~~~~~~---~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 217 (393)
..+.++||.|.+|..+|+.+.+. .+...+.... +-||..+...... .....+++|+..+++|+.+...+.
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~---~~~~~~~Vys~~~~~Wr~~~~~~~ 90 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN---RNQSEHQVYTLGSNSWRTIECSPP 90 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC---CCCccEEEEEeCCCCccccccCCC
Confidence 35889999999999997654321 1111122211 1255555432111 124578999999999999874332
Q ss_pred C-CCCceEEEECCEEEEEccCCCCCCCCCcceeEeeeeccccccCCeEEeccCCCCC----CceeEEEECCEEEEEcCCC
Q 016201 218 P-RYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGG----PHRACFVFNDRLFVVGGQE 292 (393)
Q Consensus 218 ~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~p~~~----~~~~~~~~~~~iyv~GG~~ 292 (393)
. ......+.++|.||-+.-.........+-.|| ..+++|+...++|... .....+.++|++.++....
T Consensus 91 ~~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFD-------l~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~ 163 (230)
T TIGR01640 91 HHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFD-------VSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKK 163 (230)
T ss_pred CccccCCeEEECCEEEEEEEECCCCCcEEEEEEE-------cccceEeeeeecCccccccccceEEEEECCEEEEEEecC
Confidence 2 11223677899999886432111011233333 5788899533444322 2346777899998877543
Q ss_pred CCCCCCCCCCccccccccceecCceEEeC-C-CCCeEECCCCC---CCCCC--cceeEEEECCEEEEEcCcCCCCCcccc
Q 016201 293 GDFMAKPGSPIFKCSRRHEVVYGDVYMLD-D-EMKWKVLPPMP---KPNSH--IECAWVIVNNSIIITGGTTEKHPMTKR 365 (393)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~-~~~W~~~~~~~---~~r~~--~~~~~~~~~~~i~v~GG~~~~~~~~~~ 365 (393)
... .-+||+.+ . ...|++.-.++ .+... .....+..+|+|++.-.. ....
T Consensus 164 ~~~------------------~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~-~~~~---- 220 (230)
T TIGR01640 164 DTN------------------NFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCED-ENPF---- 220 (230)
T ss_pred CCC------------------cEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCC-CCce----
Confidence 211 13589887 3 44899754333 11111 112336678888887542 1111
Q ss_pred eEEEEEEEeecCC
Q 016201 366 MILVGEVFQFHLD 378 (393)
Q Consensus 366 ~~~~~~~y~~~~~ 378 (393)
.+..||+.+|
T Consensus 221 ---~~~~y~~~~~ 230 (230)
T TIGR01640 221 ---YIFYYNVGEN 230 (230)
T ss_pred ---EEEEEeccCC
Confidence 3468888765
No 49
>PF13854 Kelch_5: Kelch motif
Probab=98.23 E-value=2.8e-06 Score=53.20 Aligned_cols=39 Identities=26% Similarity=0.336 Sum_probs=32.4
Q ss_pred CCcceeEEEEeCCEEEEEeceeCCCCCCCCCeeEEEeCCC
Q 016201 167 MAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (393)
Q Consensus 167 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 206 (393)
.+|.+|++++++++|||+||.+. ......+++|+||+.+
T Consensus 3 ~~R~~hs~~~~~~~iyi~GG~~~-~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 3 SPRYGHSAVVVGNNIYIFGGYSG-NNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCccceEEEEECCEEEEEcCccC-CCCCEECcEEEEECCC
Confidence 35899999999999999999985 2225589999999875
No 50
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.14 E-value=0.00012 Score=64.51 Aligned_cols=148 Identities=13% Similarity=0.139 Sum_probs=88.9
Q ss_pred ceeeccCCCCCeEEcCCCCccccCccEEEECCEEEEEecCCCCCCccceEEEEECCC----CceEeCCC-CCCCCCccee
Q 016201 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTD----NKWVDRFD-MPKDMAHSHL 172 (393)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~----~~W~~~~~-~~~~~~r~~~ 172 (393)
.-..||+.+++++.+......-+...+..-+|+++++||..+. .+.+..|+|.+ ..|.+.+. |..+ |-..
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~~~m~~~--RWYp 121 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESPNDMQSG--RWYP 121 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECcccccCC--Cccc
Confidence 3468899999998876443332222233348899999998653 35577888865 67988764 6664 5444
Q ss_pred EEE-EeCCEEEEEeceeCCCCCCCCCeeEEEeCCC-----CCeEeCC----CCCCCCCCceEEEECCEEEEEccCCCCCC
Q 016201 173 GVV-SDGRYIYIVSGQYGPQCRGPTSRTFVLDSET-----RKWDSIP----PLPSPRYSPATQLWRGRLHVMGGSKENRH 242 (393)
Q Consensus 173 ~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~-----~~W~~~~----~~p~~r~~~~~~~~~~~iyv~GG~~~~~~ 242 (393)
++. .-+|+++|+||..... .+.+.+.. ..|..+. ..+..-+-+..+.-+++||+++..
T Consensus 122 T~~~L~DG~vlIvGG~~~~t-------~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~----- 189 (243)
T PF07250_consen 122 TATTLPDGRVLIVGGSNNPT-------YEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR----- 189 (243)
T ss_pred cceECCCCCEEEEeCcCCCc-------ccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC-----
Confidence 444 4589999999976321 22222211 1122222 123333444555669999999864
Q ss_pred CCCcceeEeeeeccccccCCe-EEeccCCC
Q 016201 243 TPGLEHWSIAVKDGKALEKAW-RTEIPIPR 271 (393)
Q Consensus 243 ~~~~~~~~~~~~d~~~~~~~W-~~~~~~p~ 271 (393)
....|| +.++++ +.++++|.
T Consensus 190 --~s~i~d-------~~~n~v~~~lP~lPg 210 (243)
T PF07250_consen 190 --GSIIYD-------YKTNTVVRTLPDLPG 210 (243)
T ss_pred --CcEEEe-------CCCCeEEeeCCCCCC
Confidence 333344 466665 66777763
No 51
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.82 E-value=0.0022 Score=56.50 Aligned_cols=159 Identities=14% Similarity=0.154 Sum_probs=93.5
Q ss_pred EEEEE-ecCCCCCCccceEEEEECCCCc--------eEe---CCCCCCCCCcceeEEEEe----CCEEEEEeceeCCCC-
Q 016201 130 LFYVF-AGYGSLDYVHSHVDVYNFTDNK--------WVD---RFDMPKDMAHSHLGVVSD----GRYIYIVSGQYGPQC- 192 (393)
Q Consensus 130 ~iyv~-GG~~~~~~~~~~~~~yd~~~~~--------W~~---~~~~~~~~~r~~~~~~~~----~~~iyv~GG~~~~~~- 192 (393)
..|++ ||.+.+....+++++....... .++ +.++|. +|++|++.++ .....+|||..-...
T Consensus 39 ~~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~--aRYGHt~~vV~SrGKta~VlFGGRSY~P~~ 116 (337)
T PF03089_consen 39 EQYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPE--ARYGHTINVVHSRGKTACVLFGGRSYMPPG 116 (337)
T ss_pred eeEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCc--ccccceEEEEEECCcEEEEEECCcccCCcc
Confidence 35555 8888887777888887665432 111 235555 5999988776 235788999742110
Q ss_pred ----------CCCCCeeEEEeCCCCCeEe--CCCCCCCCCCceEEEECCEEEEEccCCCCC--CCCCcceeEeeeecccc
Q 016201 193 ----------RGPTSRTFVLDSETRKWDS--IPPLPSPRYSPATQLWRGRLHVMGGSKENR--HTPGLEHWSIAVKDGKA 258 (393)
Q Consensus 193 ----------~~~~~~v~~yd~~~~~W~~--~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~--~~~~~~~~~~~~~d~~~ 258 (393)
.+-...|+..|++..-.+. ++.+......|.+..-+|.+|++||+.... ..+...+..++..
T Consensus 117 qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rlkVdLl---- 192 (337)
T PF03089_consen 117 QRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRLKVDLL---- 192 (337)
T ss_pred ccchhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEccCCCCCCcEEEEEEeec----
Confidence 1123567888888776543 456677788888889999999999986543 2333333333221
Q ss_pred ccCCeEEeccCCCCCCceeEEEE---CCEEEEEcCCCCC
Q 016201 259 LEKAWRTEIPIPRGGPHRACFVF---NDRLFVVGGQEGD 294 (393)
Q Consensus 259 ~~~~W~~~~~~p~~~~~~~~~~~---~~~iyv~GG~~~~ 294 (393)
...-......++....-.++.+. .+...|+||+...
T Consensus 193 lGSP~vsC~vl~~glSisSAIvt~~~~~e~iIlGGY~sd 231 (337)
T PF03089_consen 193 LGSPAVSCTVLQGGLSISSAIVTQTGPHEYIILGGYQSD 231 (337)
T ss_pred CCCceeEEEECCCCceEeeeeEeecCCCceEEEeccccc
Confidence 11111222223333332233222 4567888998754
No 52
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.63 E-value=0.0034 Score=55.33 Aligned_cols=113 Identities=17% Similarity=0.246 Sum_probs=64.4
Q ss_pred EEEEEeceeCCCCCCCCCeeEEEeCCCCCe-----------EeCCCCCCCCCCceEEEE--C--CEEEEEccCCCCCC-C
Q 016201 180 YIYIVSGQYGPQCRGPTSRTFVLDSETRKW-----------DSIPPLPSPRYSPATQLW--R--GRLHVMGGSKENRH-T 243 (393)
Q Consensus 180 ~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W-----------~~~~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~~-~ 243 (393)
.-+|-||.+.++. ..+.+|......... ..+.+.|.+|++|++-++ . ....+|||+.-... .
T Consensus 40 ~YlIHGGrTPNNE--lS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~q 117 (337)
T PF03089_consen 40 QYLIHGGRTPNNE--LSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQ 117 (337)
T ss_pred eEEecCCcCCCcc--cccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccc
Confidence 3456677766543 255566665544331 223588999999998776 2 34788999763211 1
Q ss_pred CCcceeEee------eeccccccCCeEE--eccCCCCCCceeEEEECCEEEEEcCCCCC
Q 016201 244 PGLEHWSIA------VKDGKALEKAWRT--EIPIPRGGPHRACFVFNDRLFVVGGQEGD 294 (393)
Q Consensus 244 ~~~~~~~~~------~~d~~~~~~~W~~--~~~~p~~~~~~~~~~~~~~iyv~GG~~~~ 294 (393)
..++.|+-+ +|-.|.+-.-.+. ++.+..+...|.+.+-+|.+|++||+.-.
T Consensus 118 RTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl~ 176 (337)
T PF03089_consen 118 RTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSLE 176 (337)
T ss_pred cchhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEcc
Confidence 223333321 1111122111111 23345666667888889999999998754
No 53
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.60 E-value=0.0056 Score=57.49 Aligned_cols=124 Identities=24% Similarity=0.328 Sum_probs=80.0
Q ss_pred eCCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCC--cceeEeeee
Q 016201 177 DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPG--LEHWSIAVK 254 (393)
Q Consensus 177 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~--~~~~~~~~~ 254 (393)
.+++|+.++.. .....||+++..=...+.++.+.....++.++++||++........... ..+|....|
T Consensus 75 ~gskIv~~d~~---------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~ 145 (342)
T PF07893_consen 75 HGSKIVAVDQS---------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVY 145 (342)
T ss_pred cCCeEEEEcCC---------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEecc
Confidence 58999999642 3378899999988888888877777788888999999987643221111 114444333
Q ss_pred c------cccccCCeEEeccCCCCCC-------ceeEEEE-CCEEEE-EcCCCCCCCCCCCCCccccccccceecCceEE
Q 016201 255 D------GKALEKAWRTEIPIPRGGP-------HRACFVF-NDRLFV-VGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYM 319 (393)
Q Consensus 255 d------~~~~~~~W~~~~~~p~~~~-------~~~~~~~-~~~iyv-~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 319 (393)
+ .....-.|+.+++.|.... -.+-+++ +..|+| +-|... -.|.
T Consensus 146 ~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~----------------------GTys 203 (342)
T PF07893_consen 146 RPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRRW----------------------GTYS 203 (342)
T ss_pred ccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCce----------------------EEEE
Confidence 3 1234457888876553222 1233445 667888 443321 1799
Q ss_pred eC-CCCCeEECCC
Q 016201 320 LD-DEMKWKVLPP 331 (393)
Q Consensus 320 yd-~~~~W~~~~~ 331 (393)
|| .+.+|+.+++
T Consensus 204 fDt~~~~W~~~Gd 216 (342)
T PF07893_consen 204 FDTESHEWRKHGD 216 (342)
T ss_pred EEcCCcceeeccc
Confidence 99 6779999985
No 54
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.57 E-value=0.075 Score=51.13 Aligned_cols=247 Identities=13% Similarity=0.129 Sum_probs=127.6
Q ss_pred HhhhccEEEEecCCCCCCCCcccceeeeeecCCC--ceEEecCCCCCccccccceeEEecCCcchhhHHhhcceeeccCC
Q 016201 28 AALIADFMWASSSSSFSSSSAHLSVASNWALEKS--GVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAP 105 (393)
Q Consensus 28 ~~~~~~~ly~~GG~~~g~~~~~~~~~~~~d~~~~--~W~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (393)
.++.++.+|+.+ . ++ .+.++|.++. .|..-..-..........+..++. ..+..++.+|+.
T Consensus 116 ~~v~~~~v~v~~-~-~g-------~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~--------~~~g~l~ald~~ 178 (394)
T PRK11138 116 VTVAGGKVYIGS-E-KG-------QVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVH--------TSNGMLQALNES 178 (394)
T ss_pred cEEECCEEEEEc-C-CC-------EEEEEECCCCCCcccccCCCceecCCEEECCEEEEE--------CCCCEEEEEEcc
Confidence 456788888644 3 44 6889998664 486532210000001111111111 112368888887
Q ss_pred CC--CeEEcCCCCc--cccCccEEEECCEEEEEecCCCCCCccceEEEEECCCC--ceEeCCCCCCCC------CcceeE
Q 016201 106 DL--EWEQMPSAPV--PRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDN--KWVDRFDMPKDM------AHSHLG 173 (393)
Q Consensus 106 ~~--~W~~~~~~~~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~~------~r~~~~ 173 (393)
+. .|+.-...|. .+...+.++.++.+|+..+ + ..+..+|+.+. .|+.-...+... .....+
T Consensus 179 tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~-~------g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~s 251 (394)
T PRK11138 179 DGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGD-N------GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTT 251 (394)
T ss_pred CCCEeeeecCCCCcccccCCCCCEEECCEEEEEcC-C------CEEEEEEccCChhhheeccccCCCccchhcccccCCC
Confidence 65 5876544332 1223344556777777443 1 34677888765 476421111100 011233
Q ss_pred EEEeCCEEEEEeceeCCCCCCCCCeeEEEeCCCCC--eEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceeEe
Q 016201 174 VVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK--WDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSI 251 (393)
Q Consensus 174 ~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 251 (393)
-++.++.+|+.+. ...++++|+.+.+ |+.-- ... ...++.+++||+.... ..+.+++.
T Consensus 252 P~v~~~~vy~~~~---------~g~l~ald~~tG~~~W~~~~--~~~---~~~~~~~~~vy~~~~~------g~l~ald~ 311 (394)
T PRK11138 252 PVVVGGVVYALAY---------NGNLVALDLRSGQIVWKREY--GSV---NDFAVDGGRIYLVDQN------DRVYALDT 311 (394)
T ss_pred cEEECCEEEEEEc---------CCeEEEEECCCCCEEEeecC--CCc---cCcEEECCEEEEEcCC------CeEEEEEC
Confidence 4456899998752 2458899998765 87532 111 1346678999987521 23333332
Q ss_pred eeeccccccCCeEEeccCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCceEEeC-CCC--CeEE
Q 016201 252 AVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEM--KWKV 328 (393)
Q Consensus 252 ~~~d~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~--~W~~ 328 (393)
+.....|+..... .+...+.++.+++||+... ++ .++.+| .+. .|+.
T Consensus 312 -----~tG~~~W~~~~~~--~~~~~sp~v~~g~l~v~~~-~G----------------------~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 312 -----RGGVELWSQSDLL--HRLLTAPVLYNGYLVVGDS-EG----------------------YLHWINREDGRFVAQQ 361 (394)
T ss_pred -----CCCcEEEcccccC--CCcccCCEEECCEEEEEeC-CC----------------------EEEEEECCCCCEEEEE
Confidence 1234468653211 1222245567999987542 22 277888 332 6665
Q ss_pred -CCCCCCCCCCcceeEEEECCEEEEE
Q 016201 329 -LPPMPKPNSHIECAWVIVNNSIIIT 353 (393)
Q Consensus 329 -~~~~~~~r~~~~~~~~~~~~~i~v~ 353 (393)
+..- .. ....++.+++||+.
T Consensus 362 ~~~~~---~~--~s~P~~~~~~l~v~ 382 (394)
T PRK11138 362 KVDSS---GF--LSEPVVADDKLLIQ 382 (394)
T ss_pred EcCCC---cc--eeCCEEECCEEEEE
Confidence 2111 11 12336678898886
No 55
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.52 E-value=0.076 Score=51.06 Aligned_cols=254 Identities=14% Similarity=0.140 Sum_probs=129.0
Q ss_pred HHhhhccEEEEecCCCCCCCCcccceeeeeecCCC--ceEEecCCCCCccc-----cccceeEEecCCcchhhHHhhcce
Q 016201 27 GAALIADFMWASSSSSFSSSSAHLSVASNWALEKS--GVVVIPHVNATKID-----RQRESVAVIDKKGQDAERFLSATF 99 (393)
Q Consensus 27 ~~~~~~~~ly~~GG~~~g~~~~~~~~~~~~d~~~~--~W~~~~~~~~~~~~-----r~~~~~~~~~~~~~~~~~~~~~~~ 99 (393)
..++.++++|+.... + .+.+||.++. .|..-..-...... +..-+.++.++.-.. ...+..+
T Consensus 64 sPvv~~~~vy~~~~~--g-------~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v--~~~~g~l 132 (394)
T PRK11138 64 HPAVAYNKVYAADRA--G-------LVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYI--GSEKGQV 132 (394)
T ss_pred ccEEECCEEEEECCC--C-------eEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEE--EcCCCEE
Confidence 346778899987643 3 6888997754 48652221100000 101111221111111 0123368
Q ss_pred eeccCCCC--CeEEcCCCCccccCccEEEECCEEEEEecCCCCCCccceEEEEECCCCc--eEeCCCCCCCCCcceeEEE
Q 016201 100 ADLPAPDL--EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKDMAHSHLGVV 175 (393)
Q Consensus 100 ~~~~~~~~--~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~r~~~~~~ 175 (393)
+.+|..+. .|+.-.+- + ...+.++.++.+|+..+. ..+..+|+.+.+ |+.-...|....+...+-+
T Consensus 133 ~ald~~tG~~~W~~~~~~--~-~~ssP~v~~~~v~v~~~~-------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~ 202 (394)
T PRK11138 133 YALNAEDGEVAWQTKVAG--E-ALSRPVVSDGLVLVHTSN-------GMLQALNESDGAVKWTVNLDVPSLTLRGESAPA 202 (394)
T ss_pred EEEECCCCCCcccccCCC--c-eecCCEEECCEEEEECCC-------CEEEEEEccCCCEeeeecCCCCcccccCCCCCE
Confidence 88987654 68664321 1 122335568888875331 358999998765 8764332211112223334
Q ss_pred EeCCEEEEEeceeCCCCCCCCCeeEEEeCCCCC--eEeCCCCCCC--------CCCceEEEECCEEEEEccCCCCCCCCC
Q 016201 176 SDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK--WDSIPPLPSP--------RYSPATQLWRGRLHVMGGSKENRHTPG 245 (393)
Q Consensus 176 ~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~ 245 (393)
+.++.+|+..+ ...+..+|+++.+ |+.-...|.. ....+-++.++.+|+.+. + ..
T Consensus 203 v~~~~v~~~~~---------~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~-~-----g~ 267 (394)
T PRK11138 203 TAFGGAIVGGD---------NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY-N-----GN 267 (394)
T ss_pred EECCEEEEEcC---------CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc-C-----Ce
Confidence 55777777543 2447778887754 8643222211 112234567888888652 1 23
Q ss_pred cceeEeeeeccccccCCeEEeccCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCceEEeC-CCC
Q 016201 246 LEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEM 324 (393)
Q Consensus 246 ~~~~~~~~~d~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~ 324 (393)
..+++. ......|+... ... ...+..+++||+.... + .++.+| .+.
T Consensus 268 l~ald~-----~tG~~~W~~~~--~~~---~~~~~~~~~vy~~~~~-g----------------------~l~ald~~tG 314 (394)
T PRK11138 268 LVALDL-----RSGQIVWKREY--GSV---NDFAVDGGRIYLVDQN-D----------------------RVYALDTRGG 314 (394)
T ss_pred EEEEEC-----CCCCEEEeecC--CCc---cCcEEECCEEEEEcCC-C----------------------eEEEEECCCC
Confidence 333332 22344587632 111 1345678999987632 2 288888 332
Q ss_pred --CeEECCCCCCCCCCcceeEEEECCEEEEE
Q 016201 325 --KWKVLPPMPKPNSHIECAWVIVNNSIIIT 353 (393)
Q Consensus 325 --~W~~~~~~~~~r~~~~~~~~~~~~~i~v~ 353 (393)
.|+.-. +. .+.. .+.++.+++||+.
T Consensus 315 ~~~W~~~~-~~-~~~~--~sp~v~~g~l~v~ 341 (394)
T PRK11138 315 VELWSQSD-LL-HRLL--TAPVLYNGYLVVG 341 (394)
T ss_pred cEEEcccc-cC-CCcc--cCCEEECCEEEEE
Confidence 786421 11 1111 2235678888875
No 56
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.03 E-value=0.32 Score=46.37 Aligned_cols=198 Identities=18% Similarity=0.216 Sum_probs=101.9
Q ss_pred cceeeccCCCC--CeEEcCCCCc--cccCccEEEECCEEEEEecCCCCCCccceEEEEECCCC--ceEeCCCCCCCC---
Q 016201 97 ATFADLPAPDL--EWEQMPSAPV--PRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDN--KWVDRFDMPKDM--- 167 (393)
Q Consensus 97 ~~~~~~~~~~~--~W~~~~~~~~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~~--- 167 (393)
..++.+|+.+. .|+.....+. .+...+.+..++.+|+ |..+ ..+..+|+.+. .|+.-...+...
T Consensus 155 g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~-~~~~------g~v~ald~~tG~~~W~~~~~~~~g~~~~ 227 (377)
T TIGR03300 155 GRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLV-GFAG------GKLVALDLQTGQPLWEQRVALPKGRTEL 227 (377)
T ss_pred CeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEE-ECCC------CEEEEEEccCCCEeeeeccccCCCCCch
Confidence 35788887654 5876443321 1233444556776554 3322 25788898765 476432211100
Q ss_pred ---CcceeEEEEeCCEEEEEeceeCCCCCCCCCeeEEEeCCCCC--eEeCCCCCCCCCCceEEEECCEEEEEccCCCCCC
Q 016201 168 ---AHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK--WDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRH 242 (393)
Q Consensus 168 ---~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~ 242 (393)
.......++.++.+|+... ...+++||+++.+ |+.-.. .....++.+++||+...
T Consensus 228 ~~~~~~~~~p~~~~~~vy~~~~---------~g~l~a~d~~tG~~~W~~~~~-----~~~~p~~~~~~vyv~~~------ 287 (377)
T TIGR03300 228 ERLVDVDGDPVVDGGQVYAVSY---------QGRVAALDLRSGRVLWKRDAS-----SYQGPAVDDNRLYVTDA------ 287 (377)
T ss_pred hhhhccCCccEEECCEEEEEEc---------CCEEEEEECCCCcEEEeeccC-----CccCceEeCCEEEEECC------
Confidence 0112234456888888652 3458899987754 765311 12234567889998742
Q ss_pred CCCcceeEeeeeccccccCCeEEeccCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCceEEeC-
Q 016201 243 TPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD- 321 (393)
Q Consensus 243 ~~~~~~~~~~~~d~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd- 321 (393)
...+.+++. +.....|+... +... ...+.+..+++||+.. .++ .++.+|
T Consensus 288 ~G~l~~~d~-----~tG~~~W~~~~-~~~~-~~ssp~i~g~~l~~~~-~~G----------------------~l~~~d~ 337 (377)
T TIGR03300 288 DGVVVALDR-----RSGSELWKNDE-LKYR-QLTAPAVVGGYLVVGD-FEG----------------------YLHWLSR 337 (377)
T ss_pred CCeEEEEEC-----CCCcEEEcccc-ccCC-ccccCEEECCEEEEEe-CCC----------------------EEEEEEC
Confidence 123344432 22344576522 2211 1123345678887753 333 278888
Q ss_pred CCC--CeEECCCCCCCCCCcceeEEEECCEEEEEcC
Q 016201 322 DEM--KWKVLPPMPKPNSHIECAWVIVNNSIIITGG 355 (393)
Q Consensus 322 ~~~--~W~~~~~~~~~r~~~~~~~~~~~~~i~v~GG 355 (393)
.+. .|+.- ++.. ......++.+++||+.+.
T Consensus 338 ~tG~~~~~~~--~~~~--~~~~sp~~~~~~l~v~~~ 369 (377)
T TIGR03300 338 EDGSFVARLK--TDGS--GIASPPVVVGDGLLVQTR 369 (377)
T ss_pred CCCCEEEEEE--cCCC--ccccCCEEECCEEEEEeC
Confidence 332 56432 1111 111233778888887643
No 57
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.78 E-value=0.52 Score=44.91 Aligned_cols=211 Identities=13% Similarity=0.109 Sum_probs=104.6
Q ss_pred HHhhhccEEEEecCCCCCCCCcccceeeeeecCCCc--eEEecCCCCCccccccceeEEecCCcchhhHHhhcceeeccC
Q 016201 27 GAALIADFMWASSSSSFSSSSAHLSVASNWALEKSG--VVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPA 104 (393)
Q Consensus 27 ~~~~~~~~ly~~GG~~~g~~~~~~~~~~~~d~~~~~--W~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (393)
+.++.++.+|+.+. ++ .+.+||+.+.+ |..-..-.. ..+ .++.+...- -...+..++.+|.
T Consensus 60 ~p~v~~~~v~v~~~--~g-------~v~a~d~~tG~~~W~~~~~~~~------~~~-p~v~~~~v~-v~~~~g~l~ald~ 122 (377)
T TIGR03300 60 QPAVAGGKVYAADA--DG-------TVVALDAETGKRLWRVDLDERL------SGG-VGADGGLVF-VGTEKGEVIALDA 122 (377)
T ss_pred ceEEECCEEEEECC--CC-------eEEEEEccCCcEeeeecCCCCc------ccc-eEEcCCEEE-EEcCCCEEEEEEC
Confidence 44667787777653 34 68899976544 754222110 001 111111000 0012337888887
Q ss_pred CCC--CeEEcCCCCccccCccEEEECCEEEEEecCCCCCCccceEEEEECCCC--ceEeCCCCCCCCCcceeEEEEeCCE
Q 016201 105 PDL--EWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDN--KWVDRFDMPKDMAHSHLGVVSDGRY 180 (393)
Q Consensus 105 ~~~--~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~~~r~~~~~~~~~~~ 180 (393)
.+. .|+.... .+ ...+.++.++++|+..+ ...+..+|+.+. .|+.-...+....+...+.++.++.
T Consensus 123 ~tG~~~W~~~~~--~~-~~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~ 192 (377)
T TIGR03300 123 EDGKELWRAKLS--SE-VLSPPLVANGLVVVRTN-------DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGG 192 (377)
T ss_pred CCCcEeeeeccC--ce-eecCCEEECCEEEEECC-------CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCE
Confidence 654 5865432 11 12233455788877533 135888998765 4775332221001222334455676
Q ss_pred EEEEeceeCCCCCCCCCeeEEEeCCCCC--eEeCCCCCCCC--------CCceEEEECCEEEEEccCCCCCCCCCcceeE
Q 016201 181 IYIVSGQYGPQCRGPTSRTFVLDSETRK--WDSIPPLPSPR--------YSPATQLWRGRLHVMGGSKENRHTPGLEHWS 250 (393)
Q Consensus 181 iyv~GG~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r--------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 250 (393)
+|+ |.. ...+..+|+.+.+ |+.-...+... ...+.++.++.+|+.... ..+.+++
T Consensus 193 v~~-~~~--------~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~------g~l~a~d 257 (377)
T TIGR03300 193 VLV-GFA--------GGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ------GRVAALD 257 (377)
T ss_pred EEE-ECC--------CCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC------CEEEEEE
Confidence 554 321 2358889987754 76432222111 122334568888886421 2333443
Q ss_pred eeeeccccccCCeEEeccCCCCCCceeEEEECCEEEEEc
Q 016201 251 IAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVG 289 (393)
Q Consensus 251 ~~~~d~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~G 289 (393)
. +.....|+... +. ....+..+++||+..
T Consensus 258 ~-----~tG~~~W~~~~--~~---~~~p~~~~~~vyv~~ 286 (377)
T TIGR03300 258 L-----RSGRVLWKRDA--SS---YQGPAVDDNRLYVTD 286 (377)
T ss_pred C-----CCCcEEEeecc--CC---ccCceEeCCEEEEEC
Confidence 2 23344576531 11 123446688999875
No 58
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.41 E-value=0.1 Score=49.12 Aligned_cols=112 Identities=13% Similarity=0.156 Sum_probs=72.7
Q ss_pred ceeeccCCCCCeEEcCCCCccccCccEEEECCEEEEEecCCCCCCcc----ceEEEE--EC--------CCCceEeCCCC
Q 016201 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVH----SHVDVY--NF--------TDNKWVDRFDM 163 (393)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~----~~~~~y--d~--------~~~~W~~~~~~ 163 (393)
....||..+..-...+.|+.+.....++.++++||++.......... ...|.+ ++ ..-.|+.+++.
T Consensus 87 ~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~P 166 (342)
T PF07893_consen 87 RTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRSLPPP 166 (342)
T ss_pred CeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEcCCCC
Confidence 57899999987777777877777777778899999998764332110 144554 42 22367887765
Q ss_pred CCCCCcc-----eeEEEEe-CCEEEEE-eceeCCCCCCCCCeeEEEeCCCCCeEeCCC--CCC
Q 016201 164 PKDMAHS-----HLGVVSD-GRYIYIV-SGQYGPQCRGPTSRTFVLDSETRKWDSIPP--LPS 217 (393)
Q Consensus 164 ~~~~~r~-----~~~~~~~-~~~iyv~-GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~--~p~ 217 (393)
|...... -.+-+++ +..|+|- -+.. .-.++||.++.+|+++.+ ||.
T Consensus 167 Pf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~--------~GTysfDt~~~~W~~~GdW~LPF 221 (342)
T PF07893_consen 167 PFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR--------WGTYSFDTESHEWRKHGDWMLPF 221 (342)
T ss_pred CccccCCcccceEEEEEEecCCeEEEEecCCc--------eEEEEEEcCCcceeeccceecCc
Confidence 5432111 3344455 7788884 2211 238899999999999985 553
No 59
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.03 E-value=0.2 Score=45.43 Aligned_cols=107 Identities=15% Similarity=0.241 Sum_probs=67.9
Q ss_pred ceeeccCCCCCeEEcCCCCccccCccEEEE-CCEEEEEecCCCCCCccceEEEEECCCCceEeCCC-----CCCCCCcce
Q 016201 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFD-----MPKDMAHSH 171 (393)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~-----~~~~~~r~~ 171 (393)
.+..||....+|..+..--... -.++... +++|||.|-..-.......+-.||..+++|+.++. +|.| ...
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G~-V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgp--v~a 93 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISGT-VTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGP--VTA 93 (281)
T ss_pred EEEEEECCCCEeecCCCCceEE-EEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCc--EEE
Confidence 7899999999998876542111 1222223 67888888765444234678999999999988866 2333 222
Q ss_pred eEEEE-eCCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCC
Q 016201 172 LGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP 214 (393)
Q Consensus 172 ~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 214 (393)
..... ....+++.|.. .. ....+..|| ..+|+.+..
T Consensus 94 ~~~~~~d~~~~~~aG~~-~~----g~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRS-AN----GSTFLMKYD--GSSWSSIGS 130 (281)
T ss_pred EEeeccCCceEEEecee-cC----CCceEEEEc--CCceEeccc
Confidence 22222 24578888765 21 145677785 457999875
No 60
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.00 E-value=0.98 Score=39.63 Aligned_cols=161 Identities=22% Similarity=0.324 Sum_probs=87.0
Q ss_pred ceeeccCCCC--CeEEcCCCCccccCcc--EEEECCEEEEEecCCCCCCccceEEEEECCCCc--eEeCCCCCCCCCcce
Q 016201 98 TFADLPAPDL--EWEQMPSAPVPRLDGA--AIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKDMAHSH 171 (393)
Q Consensus 98 ~~~~~~~~~~--~W~~~~~~~~~r~~~~--~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~r~~ 171 (393)
.+..+|+.+. .|+.-. ..+..... .+..++.+|+..+ ...+.++|+.+.+ |+.- ++.+. .
T Consensus 4 ~l~~~d~~tG~~~W~~~~--~~~~~~~~~~~~~~~~~v~~~~~-------~~~l~~~d~~tG~~~W~~~--~~~~~---~ 69 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDL--GPGIGGPVATAVPDGGRVYVASG-------DGNLYALDAKTGKVLWRFD--LPGPI---S 69 (238)
T ss_dssp EEEEEETTTTEEEEEEEC--SSSCSSEEETEEEETTEEEEEET-------TSEEEEEETTTSEEEEEEE--CSSCG---G
T ss_pred EEEEEECCCCCEEEEEEC--CCCCCCccceEEEeCCEEEEEcC-------CCEEEEEECCCCCEEEEee--ccccc---c
Confidence 5667777554 576622 11122222 3346888998742 2569999997765 6553 33321 1
Q ss_pred eEEEEeCCEEEEEeceeCCCCCCCCCeeEEEeCCCCC--eE-eCCCCCCC--CCCceEEEECCEEEEEccCCCCCCCCCc
Q 016201 172 LGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK--WD-SIPPLPSP--RYSPATQLWRGRLHVMGGSKENRHTPGL 246 (393)
Q Consensus 172 ~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~--W~-~~~~~p~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 246 (393)
...+..++.+|+... .+.++++|..+.+ |+ .....+.. .......+.++.+|+... ...+
T Consensus 70 ~~~~~~~~~v~v~~~---------~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~l 134 (238)
T PF13360_consen 70 GAPVVDGGRVYVGTS---------DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS------SGKL 134 (238)
T ss_dssp SGEEEETTEEEEEET---------TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET------CSEE
T ss_pred ceeeecccccccccc---------eeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec------cCcE
Confidence 124778999988862 3369999977765 98 44432322 233344555777777653 1222
Q ss_pred ceeEeeeeccccccCCeEEeccCCCCCC--------ceeEEEECCEEEEEcCCC
Q 016201 247 EHWSIAVKDGKALEKAWRTEIPIPRGGP--------HRACFVFNDRLFVVGGQE 292 (393)
Q Consensus 247 ~~~~~~~~d~~~~~~~W~~~~~~p~~~~--------~~~~~~~~~~iyv~GG~~ 292 (393)
.++ |.+.....|+.....+.... ....+..++.+|+..+..
T Consensus 135 ~~~-----d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g 183 (238)
T PF13360_consen 135 VAL-----DPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG 183 (238)
T ss_dssp EEE-----ETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS
T ss_pred EEE-----ecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC
Confidence 233 32234456777555443221 123333468888877543
No 61
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.79 E-value=0.34 Score=45.79 Aligned_cols=99 Identities=10% Similarity=0.111 Sum_probs=60.8
Q ss_pred HHhhcceeeccCCCCCeEEcCCCC--ccccCccE-EEECCEEEEEecCCCCCCccceEEEEECCCCceEeCCCCCCCCCc
Q 016201 93 RFLSATFADLPAPDLEWEQMPSAP--VPRLDGAA-IQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAH 169 (393)
Q Consensus 93 ~~~~~~~~~~~~~~~~W~~~~~~~--~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r 169 (393)
......++.||..+.+-+++.++. ..+..... +..++.++++-|..+ .+......|++|- ..+..+...
T Consensus 276 s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G------~I~lLhakT~eli--~s~KieG~v 347 (514)
T KOG2055|consen 276 SGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG------HIHLLHAKTKELI--TSFKIEGVV 347 (514)
T ss_pred cccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCc------eEEeehhhhhhhh--heeeeccEE
Confidence 334557899999998888887653 12333222 233455666666543 3566677777774 344433233
Q ss_pred ceeEEEEeCCEEEEEeceeCCCCCCCCCeeEEEeCCCCC
Q 016201 170 SHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK 208 (393)
Q Consensus 170 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~ 208 (393)
...+....+..|++.|| ...||.+|..++.
T Consensus 348 ~~~~fsSdsk~l~~~~~---------~GeV~v~nl~~~~ 377 (514)
T KOG2055|consen 348 SDFTFSSDSKELLASGG---------TGEVYVWNLRQNS 377 (514)
T ss_pred eeEEEecCCcEEEEEcC---------CceEEEEecCCcc
Confidence 44455556677888877 3469999998874
No 62
>PRK13684 Ycf48-like protein; Provisional
Probab=95.76 E-value=1.4 Score=41.38 Aligned_cols=202 Identities=11% Similarity=0.118 Sum_probs=97.5
Q ss_pred eeeccCCCCCeEEcCCC-CccccCccEEEEC-CEEEEEecCCCCCCccceEEEEECCCCceEeCCCCCCCCCcceeEEEE
Q 016201 99 FADLPAPDLEWEQMPSA-PVPRLDGAAIQIK-NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS 176 (393)
Q Consensus 99 ~~~~~~~~~~W~~~~~~-~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~ 176 (393)
+++-.-...+|+++... ..+.....+..++ +.+++.|.. ..+++=+-..++|+.+..... -.-..+..
T Consensus 111 i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~-------G~i~~S~DgG~tW~~~~~~~~---g~~~~i~~ 180 (334)
T PRK13684 111 LLHTTDGGKNWTRIPLSEKLPGSPYLITALGPGTAEMATNV-------GAIYRTTDGGKNWEALVEDAA---GVVRNLRR 180 (334)
T ss_pred EEEECCCCCCCeEccCCcCCCCCceEEEEECCCcceeeecc-------ceEEEECCCCCCceeCcCCCc---ceEEEEEE
Confidence 44444445699988642 2233333343343 446665542 234444446789998764332 22334444
Q ss_pred eCCEEEEEeceeCCCCCCCCCeeEE-EeCCCCCeEeCCCCCCCCCCceEEE-ECCEEEEEccCCCCCCCCCcceeEeeee
Q 016201 177 DGRYIYIVSGQYGPQCRGPTSRTFV-LDSETRKWDSIPPLPSPRYSPATQL-WRGRLHVMGGSKENRHTPGLEHWSIAVK 254 (393)
Q Consensus 177 ~~~~iyv~GG~~~~~~~~~~~~v~~-yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~ 254 (393)
..+..+++-|..+ .++. .|....+|+.+.. +..+...+++. -++.++++|.. +.....+ -
T Consensus 181 ~~~g~~v~~g~~G--------~i~~s~~~gg~tW~~~~~-~~~~~l~~i~~~~~g~~~~vg~~-G~~~~~s-----~--- 242 (334)
T PRK13684 181 SPDGKYVAVSSRG--------NFYSTWEPGQTAWTPHQR-NSSRRLQSMGFQPDGNLWMLARG-GQIRFND-----P--- 242 (334)
T ss_pred CCCCeEEEEeCCc--------eEEEEcCCCCCeEEEeeC-CCcccceeeeEcCCCCEEEEecC-CEEEEcc-----C---
Confidence 4444444433222 1222 2445567998854 43444444444 36778888643 2110000 0
Q ss_pred ccccccCCeEEeccC-CCCCCc-eeEEE-ECCEEEEEcCCCCCCCCCCCCCccccccccceecCceE-EeCCCCCeEECC
Q 016201 255 DGKALEKAWRTEIPI-PRGGPH-RACFV-FNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVY-MLDDEMKWKVLP 330 (393)
Q Consensus 255 d~~~~~~~W~~~~~~-p~~~~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~yd~~~~W~~~~ 330 (393)
....+|+.+... ...... +++.. -++.++++|.... ++ ..|...+|+.+.
T Consensus 243 ---d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~-----------------------v~~S~d~G~tW~~~~ 296 (334)
T PRK13684 243 ---DDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGT-----------------------LLVSKDGGKTWEKDP 296 (334)
T ss_pred ---CCCCccccccCCccccccceeeEEEcCCCCEEEEcCCCe-----------------------EEEeCCCCCCCeECC
Confidence 245688865321 111121 22222 2667888775421 33 334557999975
Q ss_pred C-CCCCCCCcceeEEEECCEEEEEcC
Q 016201 331 P-MPKPNSHIECAWVIVNNSIIITGG 355 (393)
Q Consensus 331 ~-~~~~r~~~~~~~~~~~~~i~v~GG 355 (393)
. -..+ ......+...++++|+.|.
T Consensus 297 ~~~~~~-~~~~~~~~~~~~~~~~~G~ 321 (334)
T PRK13684 297 VGEEVP-SNFYKIVFLDPEKGFVLGQ 321 (334)
T ss_pred cCCCCC-cceEEEEEeCCCceEEECC
Confidence 3 1222 1221222344778887765
No 63
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=95.68 E-value=0.22 Score=45.25 Aligned_cols=122 Identities=13% Similarity=0.145 Sum_probs=69.8
Q ss_pred EEEEecCCCCCC-ccceEEEEECCCCceEeCCCCCCCCCcceeEEEE-eCCEEEEEeceeCCCCCCCCCeeEEEeCCCCC
Q 016201 131 FYVFAGYGSLDY-VHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK 208 (393)
Q Consensus 131 iyv~GG~~~~~~-~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~ 208 (393)
|||-|-+..... ....+=.||+.+.+|..+..--. -.-..+.. -++++||.|-..-... ....+-.||.++.+
T Consensus 1 v~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~~i~---G~V~~l~~~~~~~Llv~G~ft~~~~--~~~~la~yd~~~~~ 75 (281)
T PF12768_consen 1 VYVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGNGIS---GTVTDLQWASNNQLLVGGNFTLNGT--NSSNLATYDFKNQT 75 (281)
T ss_pred CEEeeecCCCCCcCCCEEEEEECCCCEeecCCCCce---EEEEEEEEecCCEEEEEEeeEECCC--CceeEEEEecCCCe
Confidence 345444444332 34667889999999998754321 11223333 3788888886554331 25668899999999
Q ss_pred eEeCCC-----CCCCCCCceEEEEC-CEEEEEccCCCCCCCCCcceeEeeeeccccccCCeEEecc
Q 016201 209 WDSIPP-----LPSPRYSPATQLWR-GRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIP 268 (393)
Q Consensus 209 W~~~~~-----~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~ 268 (393)
|+.++. +|.+.........+ +.+++.|... ....-+..| ...+|+.+..
T Consensus 76 w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~--~g~~~l~~~---------dGs~W~~i~~ 130 (281)
T PF12768_consen 76 WSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSA--NGSTFLMKY---------DGSSWSSIGS 130 (281)
T ss_pred eeecCCcccccCCCcEEEEEeeccCCceEEEeceec--CCCceEEEE---------cCCceEeccc
Confidence 988876 23332222222223 3577776542 112233334 3668887654
No 64
>PRK13684 Ycf48-like protein; Provisional
Probab=95.52 E-value=2.2 Score=40.06 Aligned_cols=164 Identities=10% Similarity=0.036 Sum_probs=78.6
Q ss_pred ceeeccCCCCCeEEcCC-CCccc-cCccEEEECCEEEEEecCCCCCCccceEEEEECCCCceEeCCCC-CCCCCcceeEE
Q 016201 98 TFADLPAPDLEWEQMPS-APVPR-LDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDM-PKDMAHSHLGV 174 (393)
Q Consensus 98 ~~~~~~~~~~~W~~~~~-~~~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~-~~~~~r~~~~~ 174 (393)
.++.-.-...+|++... ++... ...++...++..|++|.. ..+.+=+=...+|+++... ..+. ......
T Consensus 67 ~il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~~~~~~G~~-------g~i~~S~DgG~tW~~~~~~~~~~~-~~~~i~ 138 (334)
T PRK13684 67 TLLETNDGGETWEERSLDLPEENFRLISISFKGDEGWIVGQP-------SLLLHTTDGGKNWTRIPLSEKLPG-SPYLIT 138 (334)
T ss_pred EEEEEcCCCCCceECccCCcccccceeeeEEcCCcEEEeCCC-------ceEEEECCCCCCCeEccCCcCCCC-CceEEE
Confidence 45554445678998753 33222 223333345556766531 1133322235689987532 1111 112222
Q ss_pred EEeCCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceeEeeee
Q 016201 175 VSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVK 254 (393)
Q Consensus 175 ~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~ 254 (393)
+.-++.+|+.|. ...+++=+-.-.+|+.+..-. .-..+.+....+..+++.|..+.-+.. .+
T Consensus 139 ~~~~~~~~~~g~---------~G~i~~S~DgG~tW~~~~~~~-~g~~~~i~~~~~g~~v~~g~~G~i~~s----~~---- 200 (334)
T PRK13684 139 ALGPGTAEMATN---------VGAIYRTTDGGKNWEALVEDA-AGVVRNLRRSPDGKYVAVSSRGNFYST----WE---- 200 (334)
T ss_pred EECCCcceeeec---------cceEEEECCCCCCceeCcCCC-cceEEEEEECCCCeEEEEeCCceEEEE----cC----
Confidence 333455666653 233555555567899886533 223344444445555554443321110 01
Q ss_pred ccccccCCeEEeccCCCCCCceeEEEECCEEEEEcC
Q 016201 255 DGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGG 290 (393)
Q Consensus 255 d~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG 290 (393)
....+|+.+..............-+++++++|.
T Consensus 201 ---~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~ 233 (334)
T PRK13684 201 ---PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR 233 (334)
T ss_pred ---CCCCeEEEeeCCCcccceeeeEcCCCCEEEEec
Confidence 244679887543333322222334778888874
No 65
>smart00284 OLF Olfactomedin-like domains.
Probab=95.51 E-value=0.76 Score=40.87 Aligned_cols=185 Identities=16% Similarity=0.140 Sum_probs=98.7
Q ss_pred CCEEEEEecCCCCCCccceEEEEEC----CCCceEeCCCCCCCCCcceeEEEEeCCEEEEEeceeCCCCCCCCCeeEEEe
Q 016201 128 KNLFYVFAGYGSLDYVHSHVDVYNF----TDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLD 203 (393)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~~~~yd~----~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd 203 (393)
++++|++-+.... .+.++.|.- ....+.+.-.+|. +-.+.+.++.+|.+|.--. ....+-+||
T Consensus 34 ~~~~wv~~~~~~~---~~~v~ey~~~~~f~~~~~~~~~~Lp~--~~~GtG~VVYngslYY~~~--------~s~~iiKyd 100 (255)
T smart00284 34 KSLYWYMPLNTRV---LRSVREYSSMSDFQMGKNPTDHPLPH--AGQGTGVVVYNGSLYFNKF--------NSHDICRFD 100 (255)
T ss_pred CceEEEEccccCC---CcEEEEecCHHHHhccCCceEEECCC--ccccccEEEECceEEEEec--------CCccEEEEE
Confidence 4679998665311 244666642 3334433334555 3567788999999998642 256799999
Q ss_pred CCCCCeEeCCCCCCCC------------CCceEEEECCEEEEEccCC---CCCCCCCcceeEeeeeccccccCCeEEecc
Q 016201 204 SETRKWDSIPPLPSPR------------YSPATQLWRGRLHVMGGSK---ENRHTPGLEHWSIAVKDGKALEKAWRTEIP 268 (393)
Q Consensus 204 ~~~~~W~~~~~~p~~r------------~~~~~~~~~~~iyv~GG~~---~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~ 268 (393)
+.+++=.....+|.+. ...-.++-++-|+|+=... +.-...+++..++. ...+|.. +
T Consensus 101 L~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~------ve~tW~T--~ 172 (255)
T smart00284 101 LTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLT------IENTWIT--T 172 (255)
T ss_pred CCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccce------EEEEEEc--C
Confidence 9998864444344221 1123445566677763221 11111222222221 2456766 3
Q ss_pred CCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCceEEeC-CCCCeEECCCCCCCCCCcceeEEEE-
Q 016201 269 IPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIV- 346 (393)
Q Consensus 269 ~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~r~~~~~~~~~~- 346 (393)
.++...+ .++++-|.||++-...... ..-.+.|| .+++ .....+|.+......+++-+
T Consensus 173 ~~k~sa~-naFmvCGvLY~~~s~~~~~------------------~~I~yayDt~t~~-~~~~~i~f~n~y~~~s~l~YN 232 (255)
T smart00284 173 YNKRSAS-NAFMICGILYVTRSLGSKG------------------EKVFYAYDTNTGK-EGHLDIPFENMYEYISMLDYN 232 (255)
T ss_pred CCccccc-ccEEEeeEEEEEccCCCCC------------------cEEEEEEECCCCc-cceeeeeeccccccceeceeC
Confidence 4444332 5777789999996422111 12267898 4443 22233444433333443443
Q ss_pred --CCEEEEE
Q 016201 347 --NNSIIIT 353 (393)
Q Consensus 347 --~~~i~v~ 353 (393)
+.+||+.
T Consensus 233 P~d~~LY~w 241 (255)
T smart00284 233 PNDRKLYAW 241 (255)
T ss_pred CCCCeEEEE
Confidence 6788886
No 66
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=95.36 E-value=0.76 Score=40.87 Aligned_cols=104 Identities=13% Similarity=0.123 Sum_probs=59.1
Q ss_pred hcceeeccCCCCCeEEcCCCCccccCccEEEE--CCEEEEEecCCCCCCccceEEEEECCCCceEeCCCCCC---CCCcc
Q 016201 96 SATFADLPAPDLEWEQMPSAPVPRLDGAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK---DMAHS 170 (393)
Q Consensus 96 ~~~~~~~~~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~---~~~r~ 170 (393)
...++++++.+.+-.... .+. ..+++.. ++.+|+... ..+..+|+.+.+++.+...+. +..+.
T Consensus 21 ~~~i~~~~~~~~~~~~~~-~~~---~~G~~~~~~~g~l~v~~~--------~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ 88 (246)
T PF08450_consen 21 GGRIYRVDPDTGEVEVID-LPG---PNGMAFDRPDGRLYVADS--------GGIAVVDPDTGKVTVLADLPDGGVPFNRP 88 (246)
T ss_dssp TTEEEEEETTTTEEEEEE-SSS---EEEEEEECTTSEEEEEET--------TCEEEEETTTTEEEEEEEEETTCSCTEEE
T ss_pred CCEEEEEECCCCeEEEEe-cCC---CceEEEEccCCEEEEEEc--------CceEEEecCCCcEEEEeeccCCCcccCCC
Confidence 347888888776543322 222 2233333 688888754 224666999999998866531 23344
Q ss_pred eeEEEEeCCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeC
Q 016201 171 HLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSI 212 (393)
Q Consensus 171 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~ 212 (393)
+-.++.-+|.||+.--............++++++. .+.+.+
T Consensus 89 ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 89 NDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp EEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred ceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence 55555567888887532221110111579999998 555544
No 67
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.99 E-value=2.2 Score=40.76 Aligned_cols=175 Identities=12% Similarity=0.197 Sum_probs=85.3
Q ss_pred ECCEEEEEecCCCCCCccceEEEEECCCCceEeCCCCCC--CCCcceeEEEEeCCEEEEEeceeCCCCCCCCCeeEEEeC
Q 016201 127 IKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK--DMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDS 204 (393)
Q Consensus 127 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~--~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~ 204 (393)
.++.+++.|+-+.. +..+|..+..- ...+.. ..-| ..++...++.|++.||+++. +-.||.
T Consensus 121 ~d~t~l~s~sDd~v------~k~~d~s~a~v--~~~l~~htDYVR-~g~~~~~~~hivvtGsYDg~--------vrl~Dt 183 (487)
T KOG0310|consen 121 QDNTMLVSGSDDKV------VKYWDLSTAYV--QAELSGHTDYVR-CGDISPANDHIVVTGSYDGK--------VRLWDT 183 (487)
T ss_pred cCCeEEEecCCCce------EEEEEcCCcEE--EEEecCCcceeE-eeccccCCCeEEEecCCCce--------EEEEEe
Confidence 47889998885532 33345444442 222221 1112 33444567899999998764 556777
Q ss_pred CCCCeEeCCCCCCCCCCceEEEE-C-CEEEEEccCCCCCCCCCcceeEeeeeccccccCCeEEeccCCCCCCceeE--EE
Q 016201 205 ETRKWDSIPPLPSPRYSPATQLW-R-GRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRAC--FV 280 (393)
Q Consensus 205 ~~~~W~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~p~~~~~~~~--~~ 280 (393)
.+.+ ..+-.+.....--.++.+ . ..|...|| +.+.+||+. ..++- +..+..-.-.-.+ ..
T Consensus 184 R~~~-~~v~elnhg~pVe~vl~lpsgs~iasAgG-------n~vkVWDl~------~G~ql--l~~~~~H~KtVTcL~l~ 247 (487)
T KOG0310|consen 184 RSLT-SRVVELNHGCPVESVLALPSGSLIASAGG-------NSVKVWDLT------TGGQL--LTSMFNHNKTVTCLRLA 247 (487)
T ss_pred ccCC-ceeEEecCCCceeeEEEcCCCCEEEEcCC-------CeEEEEEec------CCcee--hhhhhcccceEEEEEee
Confidence 6663 222222211111112222 2 33444443 678888862 11111 1111100000011 11
Q ss_pred ECCEEEEEcCCCCCCCCCCCCCccccccccceecCceEEeCCCCCeEECCCCCCCCCCcceeEEEECCEEEEEcCcCC
Q 016201 281 FNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLDDEMKWKVLPPMPKPNSHIECAWVIVNNSIIITGGTTE 358 (393)
Q Consensus 281 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~W~~~~~~~~~r~~~~~~~~~~~~~i~v~GG~~~ 358 (393)
-++.=++-||.++. |-+|| ...|+.+..+..|-.-.+++ +..++.-.++|+.++
T Consensus 248 s~~~rLlS~sLD~~----------------------VKVfd-~t~~Kvv~s~~~~~pvLsia-vs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 248 SDSTRLLSGSLDRH----------------------VKVFD-TTNYKVVHSWKYPGPVLSIA-VSPDDQTVVIGMSNG 301 (487)
T ss_pred cCCceEeecccccc----------------------eEEEE-ccceEEEEeeecccceeeEE-ecCCCceEEEecccc
Confidence 25577778887764 67775 44666665444443333333 445777777777653
No 68
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=93.90 E-value=3.4 Score=36.87 Aligned_cols=183 Identities=17% Similarity=0.218 Sum_probs=101.3
Q ss_pred CCEEEEEecCCCCCCccceEEEEEC-----CCCceEeCCCCCCCCCcceeEEEEeCCEEEEEeceeCCCCCCCCCeeEEE
Q 016201 128 KNLFYVFAGYGSLDYVHSHVDVYNF-----TDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVL 202 (393)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~~~~yd~-----~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~y 202 (393)
.+++|++.+..+. .++.|.- ..++..+.-.||.+ -.+.+.++.+|.+|---. ..+.+-+|
T Consensus 30 ~~~iy~~~~~~~~-----~v~ey~~~~~f~~~~~~~~~~~Lp~~--~~GtG~vVYngslYY~~~--------~s~~Ivky 94 (250)
T PF02191_consen 30 SEKIYVTSGFSGN-----TVYEYRNYEDFLRNGRSSRTYKLPYP--WQGTGHVVYNGSLYYNKY--------NSRNIVKY 94 (250)
T ss_pred CCCEEEECccCCC-----EEEEEcCHhHHhhcCCCceEEEEece--eccCCeEEECCcEEEEec--------CCceEEEE
Confidence 5679999886543 4555532 23333333345543 557778889998887742 26889999
Q ss_pred eCCCCCeEeCCCCCCCCC------------CceEEEECCEEEEEccCCCCC---CCCCcceeEeeeeccccccCCeEEec
Q 016201 203 DSETRKWDSIPPLPSPRY------------SPATQLWRGRLHVMGGSKENR---HTPGLEHWSIAVKDGKALEKAWRTEI 267 (393)
Q Consensus 203 d~~~~~W~~~~~~p~~r~------------~~~~~~~~~~iyv~GG~~~~~---~~~~~~~~~~~~~d~~~~~~~W~~~~ 267 (393)
|+.++.=.....+|.+.. ..-.++-++-|+|+=...... ...+++.-++ ....+|..
T Consensus 95 dL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL------~v~~tw~T-- 166 (250)
T PF02191_consen 95 DLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETL------SVEQTWNT-- 166 (250)
T ss_pred ECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccC------ceEEEEEe--
Confidence 999987442222222211 133455566788875433221 1112222222 13556765
Q ss_pred cCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCceEEeC-CCCCeEECCCCCCCCCCcceeEEEE
Q 016201 268 PIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIV 346 (393)
Q Consensus 268 ~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~r~~~~~~~~~~ 346 (393)
..++...+ .++++-|.||++-..+... ..-.+.|| .+++=. ...++.+......+++.+
T Consensus 167 ~~~k~~~~-naFmvCGvLY~~~s~~~~~------------------~~I~yafDt~t~~~~-~~~i~f~~~~~~~~~l~Y 226 (250)
T PF02191_consen 167 SYPKRSAG-NAFMVCGVLYATDSYDTRD------------------TEIFYAFDTYTGKEE-DVSIPFPNPYGNISMLSY 226 (250)
T ss_pred ccCchhhc-ceeeEeeEEEEEEECCCCC------------------cEEEEEEECCCCcee-ceeeeeccccCceEeeeE
Confidence 34443332 5777889999998765431 12257898 544333 234444444333444444
Q ss_pred ---CCEEEEE
Q 016201 347 ---NNSIIIT 353 (393)
Q Consensus 347 ---~~~i~v~ 353 (393)
+.+||+.
T Consensus 227 NP~dk~LY~w 236 (250)
T PF02191_consen 227 NPRDKKLYAW 236 (250)
T ss_pred CCCCCeEEEE
Confidence 6789987
No 69
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=93.62 E-value=4.6 Score=35.30 Aligned_cols=162 Identities=25% Similarity=0.365 Sum_probs=85.9
Q ss_pred eEEEEECCCCc--eEeCCCCCCCCCcceeE-EEEeCCEEEEEeceeCCCCCCCCCeeEEEeCCCCC--eEeCCCCCCCCC
Q 016201 146 HVDVYNFTDNK--WVDRFDMPKDMAHSHLG-VVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK--WDSIPPLPSPRY 220 (393)
Q Consensus 146 ~~~~yd~~~~~--W~~~~~~~~~~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~ 220 (393)
.+.++|+.+.+ |+. .+..+. ..... .+..++.+|+..+ ...++++|+.+.+ |+.-.+ .+..
T Consensus 4 ~l~~~d~~tG~~~W~~--~~~~~~-~~~~~~~~~~~~~v~~~~~---------~~~l~~~d~~tG~~~W~~~~~--~~~~ 69 (238)
T PF13360_consen 4 TLSALDPRTGKELWSY--DLGPGI-GGPVATAVPDGGRVYVASG---------DGNLYALDAKTGKVLWRFDLP--GPIS 69 (238)
T ss_dssp EEEEEETTTTEEEEEE--ECSSSC-SSEEETEEEETTEEEEEET---------TSEEEEEETTTSEEEEEEECS--SCGG
T ss_pred EEEEEECCCCCEEEEE--ECCCCC-CCccceEEEeCCEEEEEcC---------CCEEEEEECCCCCEEEEeecc--cccc
Confidence 46777876553 765 222111 11221 4447899999842 5679999987765 765542 2212
Q ss_pred CceEEEECCEEEEEccCCCCCCCCCcceeEeeeeccccccCCeE-EeccCCCC--CCceeEEEECCEEEEEcCCCCCCCC
Q 016201 221 SPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWR-TEIPIPRG--GPHRACFVFNDRLFVVGGQEGDFMA 297 (393)
Q Consensus 221 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~d~~~~~~~W~-~~~~~p~~--~~~~~~~~~~~~iyv~GG~~~~~~~ 297 (393)
......++.+|+... ...+.+++ .......|+ .....+.. .......+.++.+|+... .+
T Consensus 70 -~~~~~~~~~v~v~~~------~~~l~~~d-----~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g---- 132 (238)
T PF13360_consen 70 -GAPVVDGGRVYVGTS------DGSLYALD-----AKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-SG---- 132 (238)
T ss_dssp -SGEEEETTEEEEEET------TSEEEEEE-----TTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-CS----
T ss_pred -ceeeecccccccccc------eeeeEecc-----cCCcceeeeeccccccccccccccCceEecCEEEEEec-cC----
Confidence 224778899988862 12333333 224555798 44432222 222334445677776653 22
Q ss_pred CCCCCccccccccceecCceEEeC-CCC--CeEECCCCCCCCC------CcceeEEEECCEEEEEcCc
Q 016201 298 KPGSPIFKCSRRHEVVYGDVYMLD-DEM--KWKVLPPMPKPNS------HIECAWVIVNNSIIITGGT 356 (393)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~v~~yd-~~~--~W~~~~~~~~~r~------~~~~~~~~~~~~i~v~GG~ 356 (393)
.++.+| .+. .|+.-...+.... ......+..++.+|+..+.
T Consensus 133 ------------------~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 182 (238)
T PF13360_consen 133 ------------------KLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGD 182 (238)
T ss_dssp ------------------EEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCT
T ss_pred ------------------cEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCC
Confidence 288899 432 7887443332111 1112334456888888654
No 70
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=93.40 E-value=5 Score=35.08 Aligned_cols=22 Identities=9% Similarity=0.182 Sum_probs=14.0
Q ss_pred CEEEEEecCCCCCCccceEEEEECCCCc
Q 016201 129 NLFYVFAGYGSLDYVHSHVDVYNFTDNK 156 (393)
Q Consensus 129 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 156 (393)
+++++.++.+ ..+..||+.+.+
T Consensus 105 ~~~~~~~~~~------~~i~~~~~~~~~ 126 (289)
T cd00200 105 GRILSSSSRD------KTIKVWDVETGK 126 (289)
T ss_pred CCEEEEecCC------CeEEEEECCCcE
Confidence 4666666633 358889987544
No 71
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=93.30 E-value=5.9 Score=35.61 Aligned_cols=144 Identities=15% Similarity=0.086 Sum_probs=65.3
Q ss_pred cEEEEecCCCCCCCCcccceeeeeecCCCceEEecCCCCCccccccceeEEecCCcch-hhHHhhcceeeccCCCCCeEE
Q 016201 33 DFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQD-AERFLSATFADLPAPDLEWEQ 111 (393)
Q Consensus 33 ~~ly~~GG~~~g~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~W~~ 111 (393)
+.+|+.++. ++ .+..||+.+..-...-..... ..++....+.... ........+..+|..+.+...
T Consensus 1 ~~~~~s~~~-d~-------~v~~~d~~t~~~~~~~~~~~~-----~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 67 (300)
T TIGR03866 1 EKAYVSNEK-DN-------TISVIDTATLEVTRTFPVGQR-----PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIG 67 (300)
T ss_pred CcEEEEecC-CC-------EEEEEECCCCceEEEEECCCC-----CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEE
Confidence 357777776 55 788888877653322111111 1122221111100 001112367788877765533
Q ss_pred -cCCCCccccCccEEEE--CCEEEEEecCCCCCCccceEEEEECCCCceEeCCCCCCCCCcceeEEEEeCCEEEEEecee
Q 016201 112 -MPSAPVPRLDGAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQY 188 (393)
Q Consensus 112 -~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~ 188 (393)
++....+ ..++.. ++.+|+.++.+ ..+..||+.+.+- +..++... ........-++++++++..+
T Consensus 68 ~~~~~~~~---~~~~~~~~g~~l~~~~~~~------~~l~~~d~~~~~~--~~~~~~~~-~~~~~~~~~dg~~l~~~~~~ 135 (300)
T TIGR03866 68 TLPSGPDP---ELFALHPNGKILYIANEDD------NLVTVIDIETRKV--LAEIPVGV-EPEGMAVSPDGKIVVNTSET 135 (300)
T ss_pred eccCCCCc---cEEEECCCCCEEEEEcCCC------CeEEEEECCCCeE--EeEeeCCC-CcceEEECCCCCEEEEEecC
Confidence 2211112 122222 34566665432 3588899887542 22222111 11112223466666665321
Q ss_pred CCCCCCCCCeeEEEeCCCCC
Q 016201 189 GPQCRGPTSRTFVLDSETRK 208 (393)
Q Consensus 189 ~~~~~~~~~~v~~yd~~~~~ 208 (393)
.+.+..||..+.+
T Consensus 136 -------~~~~~~~d~~~~~ 148 (300)
T TIGR03866 136 -------TNMAHFIDTKTYE 148 (300)
T ss_pred -------CCeEEEEeCCCCe
Confidence 2335667876644
No 72
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=92.40 E-value=1.3 Score=39.51 Aligned_cols=100 Identities=20% Similarity=0.212 Sum_probs=65.6
Q ss_pred EEEE-eCCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceeEe
Q 016201 173 GVVS-DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSI 251 (393)
Q Consensus 173 ~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 251 (393)
++.. .++.+|.--|..+ .+.+.+||+.+.+=.+..++|..-++-++++++++||.+--.+ .....||
T Consensus 49 GL~~~~~g~LyESTG~yG------~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~-----~~~f~yd- 116 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYG------QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKE-----GTGFVYD- 116 (264)
T ss_dssp EEEEEETTEEEEEECSTT------EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSS-----SEEEEEE-
T ss_pred cEEecCCCEEEEeCCCCC------cEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecC-----CeEEEEc-
Confidence 4444 6789998887654 5779999999998777778887778888999999999996543 2333443
Q ss_pred eeeccccccCCeEEeccCCCCCCceeEEEECCEEEEEcCCC
Q 016201 252 AVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQE 292 (393)
Q Consensus 252 ~~~d~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~ 292 (393)
+ ++.+.+...+....+-+.+.-+..+++--|.+
T Consensus 117 ------~--~tl~~~~~~~y~~EGWGLt~dg~~Li~SDGS~ 149 (264)
T PF05096_consen 117 ------P--NTLKKIGTFPYPGEGWGLTSDGKRLIMSDGSS 149 (264)
T ss_dssp ------T--TTTEEEEEEE-SSS--EEEECSSCEEEE-SSS
T ss_pred ------c--ccceEEEEEecCCcceEEEcCCCEEEEECCcc
Confidence 2 34555555444455567887777777776643
No 73
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=92.39 E-value=4.4 Score=38.66 Aligned_cols=174 Identities=14% Similarity=0.138 Sum_probs=88.7
Q ss_pred CCEEEEEecCCCCCCccceEEEEECCCCceEeCCCCCCC-CCcceeEEEEeCCEEEEEeceeCCCCCCCCCeeEEEeCCC
Q 016201 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKD-MAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (393)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 206 (393)
.-.|.+++|.++. -.++..|-.+|. .+.++-.. .+-..+..+..+....+++|. ..-++.||.++
T Consensus 224 ~~plllvaG~d~~----lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r--------rky~ysyDle~ 289 (514)
T KOG2055|consen 224 TAPLLLVAGLDGT----LRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGR--------RKYLYSYDLET 289 (514)
T ss_pred CCceEEEecCCCc----EEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEeccc--------ceEEEEeeccc
Confidence 3568889998754 235555655655 44433221 112233333334436677653 45589999999
Q ss_pred CCeEeCCCCCC--CCCCceE-EEECCEEEEEccCCCCCCCCCcceeEeeeeccccccCCeEEeccCCCCCCceeEEEECC
Q 016201 207 RKWDSIPPLPS--PRYSPAT-QLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFND 283 (393)
Q Consensus 207 ~~W~~~~~~p~--~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~p~~~~~~~~~~~~~ 283 (393)
.+-+++.++-. .+..... +..++.++++-|..+.. .... ..++.|-.--.++.....+....-+.
T Consensus 290 ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I-----~lLh-------akT~eli~s~KieG~v~~~~fsSdsk 357 (514)
T KOG2055|consen 290 AKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHI-----HLLH-------AKTKELITSFKIEGVVSDFTFSSDSK 357 (514)
T ss_pred cccccccCCCCcccchhheeEecCCCCeEEEcccCceE-----Eeeh-------hhhhhhhheeeeccEEeeEEEecCCc
Confidence 98888875421 1122222 33455667776664421 1111 24555544333443332222222234
Q ss_pred EEEEEcCCCCCCCCCCCCCccccccccceecCceEEeC-CCC----CeEECCCCCCCCCCcceeEEEECCEEEEEcC
Q 016201 284 RLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEM----KWKVLPPMPKPNSHIECAWVIVNNSIIITGG 355 (393)
Q Consensus 284 ~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~----~W~~~~~~~~~r~~~~~~~~~~~~~i~v~GG 355 (393)
.|++.||.. +||++| ..+ +|..-+.+ .+.+. +...++.++..|-
T Consensus 358 ~l~~~~~~G-----------------------eV~v~nl~~~~~~~rf~D~G~v----~gts~-~~S~ng~ylA~GS 406 (514)
T KOG2055|consen 358 ELLASGGTG-----------------------EVYVWNLRQNSCLHRFVDDGSV----HGTSL-CISLNGSYLATGS 406 (514)
T ss_pred EEEEEcCCc-----------------------eEEEEecCCcceEEEEeecCcc----ceeee-eecCCCceEEecc
Confidence 566666643 299998 554 66654443 22112 2445677555544
No 74
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=92.03 E-value=8.3 Score=34.13 Aligned_cols=215 Identities=14% Similarity=0.089 Sum_probs=102.4
Q ss_pred ccEEEEecCCCCCCCCcccceeeeeecCCCceEEecCCCCCccccccceeEEecCCcchhhHHhhcceeeccCCCCCeEE
Q 016201 32 ADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPAPDLEWEQ 111 (393)
Q Consensus 32 ~~~ly~~GG~~~g~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~ 111 (393)
++.||...-. . ..+.++|+.+..-..+.... ..++++....+..-- .....+..+|+.+.+++.
T Consensus 11 ~g~l~~~D~~-~-------~~i~~~~~~~~~~~~~~~~~-------~~G~~~~~~~g~l~v-~~~~~~~~~d~~~g~~~~ 74 (246)
T PF08450_consen 11 DGRLYWVDIP-G-------GRIYRVDPDTGEVEVIDLPG-------PNGMAFDRPDGRLYV-ADSGGIAVVDPDTGKVTV 74 (246)
T ss_dssp TTEEEEEETT-T-------TEEEEEETTTTEEEEEESSS-------EEEEEEECTTSEEEE-EETTCEEEEETTTTEEEE
T ss_pred CCEEEEEEcC-C-------CEEEEEECCCCeEEEEecCC-------CceEEEEccCCEEEE-EEcCceEEEecCCCcEEE
Confidence 4566666433 2 37888998887765543321 233333311111100 011244566888888888
Q ss_pred cCCCCc-----cccCccEEEECCEEEEEecCCCCCCcc--ceEEEEECCCCceEeCC-CCCCCCCcceeEEEEeCCEEEE
Q 016201 112 MPSAPV-----PRLDGAAIQIKNLFYVFAGYGSLDYVH--SHVDVYNFTDNKWVDRF-DMPKDMAHSHLGVVSDGRYIYI 183 (393)
Q Consensus 112 ~~~~~~-----~r~~~~~~~~~~~iyv~GG~~~~~~~~--~~~~~yd~~~~~W~~~~-~~~~~~~r~~~~~~~~~~~iyv 183 (393)
+...+. .+..-.++.-++.||+.--........ ..++++++. .+.+.+. .+..| .+.+..-.++.+|+
T Consensus 75 ~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~p---NGi~~s~dg~~lyv 150 (246)
T PF08450_consen 75 LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFP---NGIAFSPDGKTLYV 150 (246)
T ss_dssp EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSE---EEEEEETTSSEEEE
T ss_pred EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccc---cceEECCcchheee
Confidence 776531 122222233367888864332222112 579999999 6655543 23221 12222223456887
Q ss_pred EeceeCCCCCCCCCeeEEEeCCCCC--eEe---CCCCCCCCCCce-EEE-ECCEEEEEccCCCCCCCCCcceeEeeeecc
Q 016201 184 VSGQYGPQCRGPTSRTFVLDSETRK--WDS---IPPLPSPRYSPA-TQL-WRGRLHVMGGSKENRHTPGLEHWSIAVKDG 256 (393)
Q Consensus 184 ~GG~~~~~~~~~~~~v~~yd~~~~~--W~~---~~~~p~~r~~~~-~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~d~ 256 (393)
.- .....+++|++.... +.. +..++......- +++ .++.||+..-. ...+.+++
T Consensus 151 ~d--------s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~-----~~~I~~~~------ 211 (246)
T PF08450_consen 151 AD--------SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG-----GGRIVVFD------ 211 (246)
T ss_dssp EE--------TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET-----TTEEEEEE------
T ss_pred cc--------cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC-----CCEEEEEC------
Confidence 53 225669999986443 332 222222211122 222 26789987321 23444444
Q ss_pred ccccCCeEEeccCCCCCCceeEEEE----CCEEEEEc
Q 016201 257 KALEKAWRTEIPIPRGGPHRACFVF----NDRLFVVG 289 (393)
Q Consensus 257 ~~~~~~W~~~~~~p~~~~~~~~~~~----~~~iyv~G 289 (393)
|. .+-...-.+|.. ..+.+++ .+.|||.-
T Consensus 212 -p~-G~~~~~i~~p~~--~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 212 -PD-GKLLREIELPVP--RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp -TT-SCEEEEEE-SSS--SEEEEEEESTTSSEEEEEE
T ss_pred -CC-ccEEEEEcCCCC--CEEEEEEECCCCCEEEEEe
Confidence 44 333333345533 2355555 25677753
No 75
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=89.92 E-value=11 Score=33.61 Aligned_cols=184 Identities=13% Similarity=0.071 Sum_probs=95.8
Q ss_pred hhccEEEEecCCCCCCCCcccceeeeee----c-CCCceEEecCCCCCccccccceeEEecCCcchhhHHhhcceeeccC
Q 016201 30 LIADFMWASSSSSFSSSSAHLSVASNWA----L-EKSGVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSATFADLPA 104 (393)
Q Consensus 30 ~~~~~ly~~GG~~~g~~~~~~~~~~~~d----~-~~~~W~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (393)
.-.+++|++.+. .+ . .+..|. . ........-.++.+ -.+-|.++.++.-.-... -+..+.+||.
T Consensus 28 ~~~~~iy~~~~~-~~--~----~v~ey~~~~~f~~~~~~~~~~~Lp~~---~~GtG~vVYngslYY~~~-~s~~IvkydL 96 (250)
T PF02191_consen 28 SDSEKIYVTSGF-SG--N----TVYEYRNYEDFLRNGRSSRTYKLPYP---WQGTGHVVYNGSLYYNKY-NSRNIVKYDL 96 (250)
T ss_pred CCCCCEEEECcc-CC--C----EEEEEcCHhHHhhcCCCceEEEEece---eccCCeEEECCcEEEEec-CCceEEEEEC
Confidence 346789999887 33 2 343332 1 22223322233333 445566666555222111 2337899999
Q ss_pred CCCCe---EEcCCCCcc------c---cCccEEEECCEEEEEecCCCCCCccceEEEEECCC----CceEeCCCCCCCCC
Q 016201 105 PDLEW---EQMPSAPVP------R---LDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTD----NKWVDRFDMPKDMA 168 (393)
Q Consensus 105 ~~~~W---~~~~~~~~~------r---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~----~~W~~~~~~~~~~~ 168 (393)
.+.+= ..++..... . ...-.++-++-|+|+-...+.... -.+-+.||.+ ++|.. ..+.
T Consensus 97 ~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~-ivvskld~~tL~v~~tw~T--~~~k--- 170 (250)
T PF02191_consen 97 TTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGN-IVVSKLDPETLSVEQTWNT--SYPK--- 170 (250)
T ss_pred cCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCc-EEEEeeCcccCceEEEEEe--ccCc---
Confidence 88753 344332110 1 112234556678888766544321 2355566654 56764 3443
Q ss_pred cceeEEEEeCCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCC-CCCCCCCCceEEEE---CCEEEEE
Q 016201 169 HSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP-PLPSPRYSPATQLW---RGRLHVM 234 (393)
Q Consensus 169 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~p~~r~~~~~~~~---~~~iyv~ 234 (393)
+....+..+=|.||++-..+... ..-.+.||..+++=..+. +++.+...++++.. +.+||+.
T Consensus 171 ~~~~naFmvCGvLY~~~s~~~~~----~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~w 236 (250)
T PF02191_consen 171 RSAGNAFMVCGVLYATDSYDTRD----TEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAW 236 (250)
T ss_pred hhhcceeeEeeEEEEEEECCCCC----cEEEEEEECCCCceeceeeeeccccCceEeeeECCCCCeEEEE
Confidence 22222333456789887544321 455788999988754332 23333334445443 6788888
No 76
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=89.39 E-value=17 Score=33.41 Aligned_cols=203 Identities=14% Similarity=0.168 Sum_probs=87.5
Q ss_pred eeeccCCCCCeEEcCC-CCccccCccEEEE-CCEEEEEecCCCCCCccceEEEEECCCCceEeCCCCCCCCCcceeEEEE
Q 016201 99 FADLPAPDLEWEQMPS-APVPRLDGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS 176 (393)
Q Consensus 99 ~~~~~~~~~~W~~~~~-~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~ 176 (393)
+..-.-...+|++++- .+.|-..+.+..+ ++.++++|.. ..+++=.=...+|+.+..-... ...-....
T Consensus 83 ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~-------G~iy~T~DgG~tW~~~~~~~~g--s~~~~~r~ 153 (302)
T PF14870_consen 83 LLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDR-------GAIYRTTDGGKTWQAVVSETSG--SINDITRS 153 (302)
T ss_dssp EEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT---------EEEESSTTSSEEEEE-S------EEEEEE-
T ss_pred EEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCC-------CcEEEeCCCCCCeeEcccCCcc--eeEeEEEC
Confidence 4444446679999863 3344444444444 5567776543 2345444466799986532221 11212233
Q ss_pred eCCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceeEeeeecc
Q 016201 177 DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDG 256 (393)
Q Consensus 177 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~d~ 256 (393)
-++++++++. . -+-+...|+....|+........|-......-++.|+++. ..+. + .+. +.
T Consensus 154 ~dG~~vavs~-~-------G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~-----~-~~s----~~ 214 (302)
T PF14870_consen 154 SDGRYVAVSS-R-------GNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQ-----I-QFS----DD 214 (302)
T ss_dssp TTS-EEEEET-T-------SSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTE-----E-EEE----E-
T ss_pred CCCcEEEEEC-c-------ccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcE-----E-EEc----cC
Confidence 4667666652 1 1223456888888998775443444333334466787764 2211 0 011 00
Q ss_pred ccccCCeEEec-cCCCCCCceeEEEE--CCEEEEEcCCCCCCCCCCCCCccccccccceecCceEE-eCCCCCeEECCC-
Q 016201 257 KALEKAWRTEI-PIPRGGPHRACFVF--NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYM-LDDEMKWKVLPP- 331 (393)
Q Consensus 257 ~~~~~~W~~~~-~~p~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-yd~~~~W~~~~~- 331 (393)
.....+|++.. +.+...++.--++. ++.+++.||... +++ -|..++|++...
T Consensus 215 ~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~-----------------------l~~S~DgGktW~~~~~~ 271 (302)
T PF14870_consen 215 PDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGT-----------------------LLVSTDGGKTWQKDRVG 271 (302)
T ss_dssp TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT------------------------EEEESSTTSS-EE-GGG
T ss_pred CCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCcc-----------------------EEEeCCCCccceECccc
Confidence 01455677632 33334443232232 678999988653 443 346679999652
Q ss_pred --CCCCCCCcceeEEEECCEEEEEcC
Q 016201 332 --MPKPNSHIECAWVIVNNSIIITGG 355 (393)
Q Consensus 332 --~~~~r~~~~~~~~~~~~~i~v~GG 355 (393)
.|.-.. -.....+++-+++|-
T Consensus 272 ~~~~~n~~---~i~f~~~~~gf~lG~ 294 (302)
T PF14870_consen 272 ENVPSNLY---RIVFVNPDKGFVLGQ 294 (302)
T ss_dssp TTSSS------EEEEEETTEEEEE-S
T ss_pred cCCCCceE---EEEEcCCCceEEECC
Confidence 332222 122445679999875
No 77
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=88.44 E-value=20 Score=32.97 Aligned_cols=162 Identities=9% Similarity=0.055 Sum_probs=70.8
Q ss_pred ceeeccCCCCCeEEcCCC-Ccc-c-cCccEEEECCEEEEEecCCCCCCccceEEEEECCCCceEeCCC-CCCCCCcceeE
Q 016201 98 TFADLPAPDLEWEQMPSA-PVP-R-LDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFD-MPKDMAHSHLG 173 (393)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~-~~~-r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~-~~~~~~r~~~~ 173 (393)
.+++-.-...+|+.+..- ..+ . ...++...++..||+|.. .-+.+-.=...+|++++- .+.|. .....
T Consensus 38 ~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~-------g~ll~T~DgG~tW~~v~l~~~lpg-s~~~i 109 (302)
T PF14870_consen 38 TILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEP-------GLLLHTTDGGKTWERVPLSSKLPG-SPFGI 109 (302)
T ss_dssp EEEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEET-------TEEEEESSTTSS-EE----TT-SS--EEEE
T ss_pred EEEEECCCCccccccccCCCccceeeEEEEEecCCceEEEcCC-------ceEEEecCCCCCcEEeecCCCCCC-CeeEE
Confidence 455545556789887642 222 1 223444457889998742 123333446789999852 12221 22223
Q ss_pred EEEeCCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCCCCCCCCCceEEEE-CCEEEEEccCCCCCCCCCcceeEee
Q 016201 174 VVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLW-RGRLHVMGGSKENRHTPGLEHWSIA 252 (393)
Q Consensus 174 ~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~ 252 (393)
.+.-++.+.++|. ...+++-.-.-.+|+.+..-.. -....+... ++++++++ ..+. -...++
T Consensus 110 ~~l~~~~~~l~~~---------~G~iy~T~DgG~tW~~~~~~~~-gs~~~~~r~~dG~~vavs-~~G~----~~~s~~-- 172 (302)
T PF14870_consen 110 TALGDGSAELAGD---------RGAIYRTTDGGKTWQAVVSETS-GSINDITRSSDGRYVAVS-SRGN----FYSSWD-- 172 (302)
T ss_dssp EEEETTEEEEEET---------T--EEEESSTTSSEEEEE-S-----EEEEEE-TTS-EEEEE-TTSS----EEEEE---
T ss_pred EEcCCCcEEEEcC---------CCcEEEeCCCCCCeeEcccCCc-ceeEeEEECCCCcEEEEE-Cccc----EEEEec--
Confidence 3445667777763 2336665556678988754222 122223333 45544454 3221 111222
Q ss_pred eeccccccCCeEEeccCCCCCCceeEEEECCEEEEEc
Q 016201 253 VKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVG 289 (393)
Q Consensus 253 ~~d~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~G 289 (393)
|....|+........|.....+.-++.|+++.
T Consensus 173 -----~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~ 204 (302)
T PF14870_consen 173 -----PGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA 204 (302)
T ss_dssp -----TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE
T ss_pred -----CCCccceEEccCccceehhceecCCCCEEEEe
Confidence 56677988766555555444445577888875
No 78
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=88.02 E-value=5.2 Score=35.81 Aligned_cols=96 Identities=20% Similarity=0.214 Sum_probs=69.0
Q ss_pred ECCEEEEEecCCCCCCccceEEEEECCCCceEeCCCCCCCCCcceeEEEEeCCEEEEEeceeCCCCCCCCCeeEEEeCCC
Q 016201 127 IKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (393)
Q Consensus 127 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 206 (393)
-++.+|.--|..+. +.+.+||+.+.+-....++|. ...+=+++.++++||.+==. ....+.||+.+
T Consensus 54 ~~g~LyESTG~yG~----S~l~~~d~~tg~~~~~~~l~~--~~FgEGit~~~d~l~qLTWk--------~~~~f~yd~~t 119 (264)
T PF05096_consen 54 DDGTLYESTGLYGQ----SSLRKVDLETGKVLQSVPLPP--RYFGEGITILGDKLYQLTWK--------EGTGFVYDPNT 119 (264)
T ss_dssp ETTEEEEEECSTTE----EEEEEEETTTSSEEEEEE-TT--T--EEEEEEETTEEEEEESS--------SSEEEEEETTT
T ss_pred CCCEEEEeCCCCCc----EEEEEEECCCCcEEEEEECCc--cccceeEEEECCEEEEEEec--------CCeEEEEcccc
Confidence 47899998887663 678999999998776667776 35677889999999999421 45688999975
Q ss_pred CCeEeCCCCCCCCCCceEEEECCEEEEEccCC
Q 016201 207 RKWDSIPPLPSPRYSPATQLWRGRLHVMGGSK 238 (393)
Q Consensus 207 ~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 238 (393)
.+++...+.+..+-.++.-+..|++.-|.+
T Consensus 120 --l~~~~~~~y~~EGWGLt~dg~~Li~SDGS~ 149 (264)
T PF05096_consen 120 --LKKIGTFPYPGEGWGLTSDGKRLIMSDGSS 149 (264)
T ss_dssp --TEEEEEEE-SSS--EEEECSSCEEEE-SSS
T ss_pred --ceEEEEEecCCcceEEEcCCCEEEEECCcc
Confidence 567776666778888887777888887753
No 79
>PRK04792 tolB translocation protein TolB; Provisional
Probab=87.53 E-value=30 Score=33.89 Aligned_cols=103 Identities=8% Similarity=-0.000 Sum_probs=58.1
Q ss_pred ceeeccCCCCCeEEcCCCCccccCccEEEEC-CEEEEEecCCCCCCccceEEEEECCCCceEeCCCCCCCCCcceeEEEE
Q 016201 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIK-NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS 176 (393)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~ 176 (393)
.++.+|..+.+-+.+...+..-... ...-+ .+|++....++ ..+++.+|+.+++.+++...... ....+..-
T Consensus 243 ~L~~~dl~tg~~~~lt~~~g~~~~~-~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~~~~--~~~p~wSp 315 (448)
T PRK04792 243 EIFVQDIYTQVREKVTSFPGINGAP-RFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRITRHRAI--DTEPSWHP 315 (448)
T ss_pred EEEEEECCCCCeEEecCCCCCcCCe-eECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEECccCCCC--ccceEECC
Confidence 6888888777666665543221111 12223 45655544332 25799999999998887653221 11222222
Q ss_pred eCCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCC
Q 016201 177 DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP 213 (393)
Q Consensus 177 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~ 213 (393)
.+..|++..... ...+++.+|..+.+++.+.
T Consensus 316 DG~~I~f~s~~~------g~~~Iy~~dl~~g~~~~Lt 346 (448)
T PRK04792 316 DGKSLIFTSERG------GKPQIYRVNLASGKVSRLT 346 (448)
T ss_pred CCCEEEEEECCC------CCceEEEEECCCCCEEEEe
Confidence 334555543211 1357999999998888775
No 80
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=87.30 E-value=29 Score=33.42 Aligned_cols=97 Identities=8% Similarity=0.033 Sum_probs=49.9
Q ss_pred eeeccCCCCCeEEcCCC--C-ccc--cCccEEEECCEEEEEecCCCCCCccceEEEEECCCCceEeCCCCCCCCCcceeE
Q 016201 99 FADLPAPDLEWEQMPSA--P-VPR--LDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLG 173 (393)
Q Consensus 99 ~~~~~~~~~~W~~~~~~--~-~~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~ 173 (393)
+..-+-...+|++.... . ..+ ...++...++..|++|-. + .+..=+-..++|++++..+.. +.....
T Consensus 112 IL~T~DGG~tW~~~~~~~~~~~~~~~~l~~v~f~~~~g~~vG~~-G------~il~T~DgG~tW~~~~~~~~~-p~~~~~ 183 (398)
T PLN00033 112 LLETKDGGKTWVPRSIPSAEDEDFNYRFNSISFKGKEGWIIGKP-A------ILLHTSDGGETWERIPLSPKL-PGEPVL 183 (398)
T ss_pred EEEEcCCCCCceECccCcccccccccceeeeEEECCEEEEEcCc-e------EEEEEcCCCCCceECccccCC-CCCceE
Confidence 44444456689886421 1 111 234445557788887542 1 122223346899987643221 111223
Q ss_pred EEEe-CCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeC
Q 016201 174 VVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSI 212 (393)
Q Consensus 174 ~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~ 212 (393)
+..+ ++.++++|. ...+++-+-.-.+|+.+
T Consensus 184 i~~~~~~~~~ivg~---------~G~v~~S~D~G~tW~~~ 214 (398)
T PLN00033 184 IKATGPKSAEMVTD---------EGAIYVTSNAGRNWKAA 214 (398)
T ss_pred EEEECCCceEEEec---------cceEEEECCCCCCceEc
Confidence 3333 456788873 22255555556789987
No 81
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=87.17 E-value=22 Score=31.86 Aligned_cols=66 Identities=15% Similarity=0.241 Sum_probs=36.1
Q ss_pred EEEEEecCCCCCCccceEEEEECCCCceEeCCCCCCCCCcceeEEEEeCCEEEEEeceeCCCCCCCCCeeEEEeCCCCCe
Q 016201 130 LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKW 209 (393)
Q Consensus 130 ~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W 209 (393)
++|+.++.+ ..+.+||+.+++-...-..... .+ ..+....+..+|+.++. ...+..||..+.+.
T Consensus 2 ~~~~s~~~d------~~v~~~d~~t~~~~~~~~~~~~-~~-~l~~~~dg~~l~~~~~~--------~~~v~~~d~~~~~~ 65 (300)
T TIGR03866 2 KAYVSNEKD------NTISVIDTATLEVTRTFPVGQR-PR-GITLSKDGKLLYVCASD--------SDTIQVIDLATGEV 65 (300)
T ss_pred cEEEEecCC------CEEEEEECCCCceEEEEECCCC-CC-ceEECCCCCEEEEEECC--------CCeEEEEECCCCcE
Confidence 567777654 3588889887664332222111 12 12222223457777642 34588899888765
Q ss_pred Ee
Q 016201 210 DS 211 (393)
Q Consensus 210 ~~ 211 (393)
..
T Consensus 66 ~~ 67 (300)
T TIGR03866 66 IG 67 (300)
T ss_pred EE
Confidence 43
No 82
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=87.10 E-value=11 Score=34.92 Aligned_cols=124 Identities=15% Similarity=0.116 Sum_probs=70.0
Q ss_pred CEEEEEecee-CCCCCCCC-CeeEEEeCCCC-----CeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceeEe
Q 016201 179 RYIYIVSGQY-GPQCRGPT-SRTFVLDSETR-----KWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSI 251 (393)
Q Consensus 179 ~~iyv~GG~~-~~~~~~~~-~~v~~yd~~~~-----~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 251 (393)
..++++|-.- ......+. ..+..|+.... +.+.+.....+-.-.+++.++++|.+.-| +.+..|++
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g-------~~l~v~~l 114 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG-------NKLYVYDL 114 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET-------TEEEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec-------CEEEEEEc
Confidence 4677777432 22211223 66889998885 55655544444455677788999666655 35555655
Q ss_pred eeeccccccC-CeEEeccCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCceEEeCC-CCCeEEC
Q 016201 252 AVKDGKALEK-AWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLDD-EMKWKVL 329 (393)
Q Consensus 252 ~~~d~~~~~~-~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~-~~~W~~~ 329 (393)
..+ ++...+.+.......++.+.++.|++.--..+- .++.|++ ..+-..+
T Consensus 115 -------~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv---------------------~~~~~~~~~~~l~~v 166 (321)
T PF03178_consen 115 -------DNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSV---------------------SLLRYDEENNKLILV 166 (321)
T ss_dssp -------ETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSE---------------------EEEEEETTTE-EEEE
T ss_pred -------cCcccchhhheecceEEEEEEeccccEEEEEEcccCE---------------------EEEEEEccCCEEEEE
Confidence 333 487777665555656777788866654333321 2566774 3467776
Q ss_pred CCCCCCCC
Q 016201 330 PPMPKPNS 337 (393)
Q Consensus 330 ~~~~~~r~ 337 (393)
+.-..++.
T Consensus 167 a~d~~~~~ 174 (321)
T PF03178_consen 167 ARDYQPRW 174 (321)
T ss_dssp EEESS-BE
T ss_pred EecCCCcc
Confidence 65444444
No 83
>smart00284 OLF Olfactomedin-like domains.
Probab=87.02 E-value=22 Score=31.78 Aligned_cols=110 Identities=11% Similarity=0.090 Sum_probs=64.9
Q ss_pred CCCccccCccEEEECCEEEEEecCCCCCCccceEEEEECCCCceEeCCCCCCCC----------CcceeEEEEeCCEEEE
Q 016201 114 SAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDM----------AHSHLGVVSDGRYIYI 183 (393)
Q Consensus 114 ~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~----------~r~~~~~~~~~~~iyv 183 (393)
.+|.+-.+.+.++.++.+|.--. ....+.+||+.+++-.....+|... .....-+++..+-|+|
T Consensus 69 ~Lp~~~~GtG~VVYngslYY~~~------~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWv 142 (255)
T smart00284 69 PLPHAGQGTGVVVYNGSLYFNKF------NSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWV 142 (255)
T ss_pred ECCCccccccEEEECceEEEEec------CCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEE
Confidence 46666677788999999998432 2367999999998865434344210 1223455666676777
Q ss_pred EeceeCCCCCCCCCeeEEEeCCCC----CeEeCCCCCCCCCCceEEEECCEEEEEc
Q 016201 184 VSGQYGPQCRGPTSRTFVLDSETR----KWDSIPPLPSPRYSPATQLWRGRLHVMG 235 (393)
Q Consensus 184 ~GG~~~~~~~~~~~~v~~yd~~~~----~W~~~~~~p~~r~~~~~~~~~~~iyv~G 235 (393)
+=....... .-.+-+.||.+- +|.. ..+.+... .+.++.|.||++-
T Consensus 143 IYat~~~~g---~ivvSkLnp~tL~ve~tW~T--~~~k~sa~-naFmvCGvLY~~~ 192 (255)
T smart00284 143 IYATEQNAG---KIVISKLNPATLTIENTWIT--TYNKRSAS-NAFMICGILYVTR 192 (255)
T ss_pred EEeccCCCC---CEEEEeeCcccceEEEEEEc--CCCccccc-ccEEEeeEEEEEc
Confidence 743222211 222345677654 4655 33333333 4566778999994
No 84
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=86.83 E-value=21 Score=34.07 Aligned_cols=120 Identities=10% Similarity=0.236 Sum_probs=64.9
Q ss_pred EEEEe-CCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCCCCCCCCCceE-EEECCEEEEEccCCCCCCCCCcceeE
Q 016201 173 GVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPAT-QLWRGRLHVMGGSKENRHTPGLEHWS 250 (393)
Q Consensus 173 ~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~ 250 (393)
+++.+ +|.||..|- +-..+..||..... .++..|..-.--.. ...+|..|+.-+.+ ...+.+||
T Consensus 352 s~~fHpDgLifgtgt--------~d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~ad----d~~V~lwD 417 (506)
T KOG0289|consen 352 SAAFHPDGLIFGTGT--------PDGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAAD----DGSVKLWD 417 (506)
T ss_pred EeeEcCCceEEeccC--------CCceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEec----CCeEEEEE
Confidence 33443 677777763 34557888988765 55555532111122 22345555555444 33488888
Q ss_pred eeeeccccccCCeEEeccCCCCCCceeEEEE--CCEEEEEcCCCCCCCCCCCCCccccccccceecCceEEeC-CCCCeE
Q 016201 251 IAVKDGKALEKAWRTEIPIPRGGPHRACFVF--NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWK 327 (393)
Q Consensus 251 ~~~~d~~~~~~~W~~~~~~p~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~ 327 (393)
+ .+.......+ ++... ......+ .|+.++++|.+- .||.|+ .+..|+
T Consensus 418 L------RKl~n~kt~~-l~~~~-~v~s~~fD~SGt~L~~~g~~l----------------------~Vy~~~k~~k~W~ 467 (506)
T KOG0289|consen 418 L------RKLKNFKTIQ-LDEKK-EVNSLSFDQSGTYLGIAGSDL----------------------QVYICKKKTKSWT 467 (506)
T ss_pred e------hhhcccceee-ccccc-cceeEEEcCCCCeEEeeccee----------------------EEEEEecccccce
Confidence 7 1222222221 22211 1233333 466777776543 288888 667999
Q ss_pred ECCCCCCCC
Q 016201 328 VLPPMPKPN 336 (393)
Q Consensus 328 ~~~~~~~~r 336 (393)
.+..++...
T Consensus 468 ~~~~~~~~s 476 (506)
T KOG0289|consen 468 EIKELADHS 476 (506)
T ss_pred eeehhhhcc
Confidence 998777654
No 85
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=86.17 E-value=12 Score=29.42 Aligned_cols=83 Identities=13% Similarity=0.274 Sum_probs=55.3
Q ss_pred EEeCCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCC---CCCCCCCceEEEECCEEEEEccCCCCCCCCCcceeEe
Q 016201 175 VSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP---LPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSI 251 (393)
Q Consensus 175 ~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 251 (393)
+.+||.+|-..-. .. .....+.+||..+++|+.++. .........++.++|+|-++.-..... ....+.|-+
T Consensus 2 icinGvly~~a~~-~~---~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~-~~~~~iWvL 76 (129)
T PF08268_consen 2 ICINGVLYWLAWS-ED---SDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGE-PDSIDIWVL 76 (129)
T ss_pred EEECcEEEeEEEE-CC---CCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCC-cceEEEEEe
Confidence 4578888887754 11 236779999999999987763 234556677888899998875433211 234666665
Q ss_pred eeeccccccCCeEEe
Q 016201 252 AVKDGKALEKAWRTE 266 (393)
Q Consensus 252 ~~~d~~~~~~~W~~~ 266 (393)
+ | ....+|++.
T Consensus 77 e--D--~~k~~Wsk~ 87 (129)
T PF08268_consen 77 E--D--YEKQEWSKK 87 (129)
T ss_pred e--c--cccceEEEE
Confidence 4 2 345889875
No 86
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=85.58 E-value=35 Score=32.81 Aligned_cols=51 Identities=14% Similarity=0.200 Sum_probs=27.5
Q ss_pred cCCCCCeEEcCCCCc-cccCccEEEE-CCEEEEEecCCCCCCccceEEEEECCCCceEeC
Q 016201 103 PAPDLEWEQMPSAPV-PRLDGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDR 160 (393)
Q Consensus 103 ~~~~~~W~~~~~~~~-~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~ 160 (393)
.-...+|++++..+. |-.......+ ++.++++|.. ..+++=+-..++|+.+
T Consensus 162 ~DgG~tW~~~~~~~~~p~~~~~i~~~~~~~~~ivg~~-------G~v~~S~D~G~tW~~~ 214 (398)
T PLN00033 162 SDGGETWERIPLSPKLPGEPVLIKATGPKSAEMVTDE-------GAIYVTSNAGRNWKAA 214 (398)
T ss_pred cCCCCCceECccccCCCCCceEEEEECCCceEEEecc-------ceEEEECCCCCCceEc
Confidence 334569998765321 2222333334 3457777632 2245545566789986
No 87
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=85.51 E-value=11 Score=34.85 Aligned_cols=78 Identities=14% Similarity=0.182 Sum_probs=52.3
Q ss_pred ceEEEEECCCC-----ceEeCCCCCCCCCcceeEEEEeCCEEEEEeceeCCCCCCCCCeeEEEeCCCCC-eEeCCCCCCC
Q 016201 145 SHVDVYNFTDN-----KWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK-WDSIPPLPSP 218 (393)
Q Consensus 145 ~~~~~yd~~~~-----~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~ 218 (393)
..+..|+.... +.+.+.....+ -.-.+++.+++++.+.-| +.+..|+...+. +...+.+..+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~--g~V~ai~~~~~~lv~~~g----------~~l~v~~l~~~~~l~~~~~~~~~ 129 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVK--GPVTAICSFNGRLVVAVG----------NKLYVYDLDNSKTLLKKAFYDSP 129 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEES--S-EEEEEEETTEEEEEET----------TEEEEEEEETTSSEEEEEEE-BS
T ss_pred cEEEEEEEEcccccceEEEEEEEEeec--CcceEhhhhCCEEEEeec----------CEEEEEEccCcccchhhheecce
Confidence 56888988884 66666544332 335677778998666554 457788888877 8888766655
Q ss_pred CCCceEEEECCEEEEE
Q 016201 219 RYSPATQLWRGRLHVM 234 (393)
Q Consensus 219 r~~~~~~~~~~~iyv~ 234 (393)
-...++.+.++.|++.
T Consensus 130 ~~i~sl~~~~~~I~vg 145 (321)
T PF03178_consen 130 FYITSLSVFKNYILVG 145 (321)
T ss_dssp SSEEEEEEETTEEEEE
T ss_pred EEEEEEeccccEEEEE
Confidence 5666677888876654
No 88
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=85.29 E-value=27 Score=31.12 Aligned_cols=186 Identities=15% Similarity=0.092 Sum_probs=83.0
Q ss_pred CCCCCeEE--cCCCCc-------cccCccEEEECCEEEEEecCCCCCCccceEEEEECC-----CCce-EeCCCCCCCCC
Q 016201 104 APDLEWEQ--MPSAPV-------PRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFT-----DNKW-VDRFDMPKDMA 168 (393)
Q Consensus 104 ~~~~~W~~--~~~~~~-------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~-----~~~W-~~~~~~~~~~~ 168 (393)
...+.|++ ++..+. ...-|+.+.+++.-|.+|=.++.-.+..--..|-+. ...- +.++.- ....
T Consensus 112 F~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yfs~~~~sp~~~vrr~i~se-y~~~ 190 (367)
T PF12217_consen 112 FHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVSPRELGFLYFSDAFASPGVFVRRIIPSE-YERN 190 (367)
T ss_dssp STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEETTTTT-TT--EEEE--GG-G-TT
T ss_pred cccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccCCCCcceeeEEEecccccCCcceeeeechhh-hccc
Confidence 34557854 444443 233578888898888988665543322222222211 1111 222221 1113
Q ss_pred cceeEEEEeCCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCC-CCCCCCCCceEEEECCEEEEEccCCC--------
Q 016201 169 HSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP-PLPSPRYSPATQLWRGRLHVMGGSKE-------- 239 (393)
Q Consensus 169 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~p~~r~~~~~~~~~~~iyv~GG~~~-------- 239 (393)
.+-.++-..++++|+.---.... .+-+.+.+-+.....|+.+. |-.........+.+++.||+||-...
T Consensus 191 AsEPCvkyY~g~LyLtTRgt~~~--~~GS~L~rs~d~G~~w~slrfp~nvHhtnlPFakvgD~l~mFgsERA~~EWE~G~ 268 (367)
T PF12217_consen 191 ASEPCVKYYDGVLYLTTRGTLPT--NPGSSLHRSDDNGQNWSSLRFPNNVHHTNLPFAKVGDVLYMFGSERAENEWEGGE 268 (367)
T ss_dssp EEEEEEEEETTEEEEEEEES-TT--S---EEEEESSTTSS-EEEE-TT---SS---EEEETTEEEEEEE-SSTT-SSTT-
T ss_pred cccchhhhhCCEEEEEEcCcCCC--CCcceeeeecccCCchhhccccccccccCCCceeeCCEEEEEeccccccccccCC
Confidence 45567778899999986322221 34567888888888898875 22233445556788999999986421
Q ss_pred --CCCC---CCcceeEeeeeccccccCCeEEecc------CCCCCCcee-EEEECCEE-EEEcCCC
Q 016201 240 --NRHT---PGLEHWSIAVKDGKALEKAWRTEIP------IPRGGPHRA-CFVFNDRL-FVVGGQE 292 (393)
Q Consensus 240 --~~~~---~~~~~~~~~~~d~~~~~~~W~~~~~------~p~~~~~~~-~~~~~~~i-yv~GG~~ 292 (393)
.+|. +....-.+.+-+.+++.-+|..+.. ......+.+ +|+-++-| |+|||.+
T Consensus 269 ~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~KD~~lyy~FGgED 334 (367)
T PF12217_consen 269 PDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVVKDGWLYYIFGGED 334 (367)
T ss_dssp ----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS---SEEEEEEEETTEEEEEEEEB-
T ss_pred CcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEECCEEEEEecCcc
Confidence 1121 1222222334444566667776643 112223333 34457766 5688865
No 89
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=84.84 E-value=47 Score=33.55 Aligned_cols=31 Identities=26% Similarity=0.344 Sum_probs=21.6
Q ss_pred eeeeeecCCCceEEecCCCCCccccccceeEEe
Q 016201 52 VASNWALEKSGVVVIPHVNATKIDRQRESVAVI 84 (393)
Q Consensus 52 ~~~~~d~~~~~W~~~~~~~~~~~~r~~~~~~~~ 84 (393)
.+|.|++.. .|...+-+..+ ..|+-.+.+-.
T Consensus 48 ~IEiwN~~~-~w~~~~vi~g~-~drsIE~L~W~ 78 (691)
T KOG2048|consen 48 NIEIWNLSN-NWFLEPVIHGP-EDRSIESLAWA 78 (691)
T ss_pred cEEEEccCC-CceeeEEEecC-CCCceeeEEEc
Confidence 899999765 88877776653 44666666655
No 90
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=83.98 E-value=21 Score=30.40 Aligned_cols=60 Identities=17% Similarity=0.267 Sum_probs=37.9
Q ss_pred CCEEEEEecCCCCCCccceEEEEECCCCceEeC---------CCCCCCCCcceeEEEEeCCEEEEEeceeCCCCCCCCCe
Q 016201 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDR---------FDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSR 198 (393)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~---------~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 198 (393)
++++|++-| +..++||...++.... +.+|. ....+....++++|+|-| +.
T Consensus 110 ~~~~yfFkg--------~~y~ry~~~~~~v~~~yP~~i~~~w~g~p~---~idaa~~~~~~~~yfF~g----------~~ 168 (194)
T cd00094 110 NGKTYFFKG--------DKYWRYDEKTQKMDPGYPKLIETDFPGVPD---KVDAAFRWLDGYYYFFKG----------DQ 168 (194)
T ss_pred CCEEEEEeC--------CEEEEEeCCCccccCCCCcchhhcCCCcCC---CcceeEEeCCCcEEEEEC----------CE
Confidence 579999987 4578888766554211 11221 223334344589999975 45
Q ss_pred eEEEeCCCCC
Q 016201 199 TFVLDSETRK 208 (393)
Q Consensus 199 v~~yd~~~~~ 208 (393)
+++||..+.+
T Consensus 169 y~~~d~~~~~ 178 (194)
T cd00094 169 YWRFDPRSKE 178 (194)
T ss_pred EEEEeCccce
Confidence 8999988765
No 91
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=83.87 E-value=43 Score=32.37 Aligned_cols=136 Identities=10% Similarity=0.098 Sum_probs=65.5
Q ss_pred EECCEEEEEecCCCCCCccceEEEEECCCCceEeCCCCCCCCCcceeEEEEeCCEEEEEeceeCCCCCCCCCeeEEEeCC
Q 016201 126 QIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSE 205 (393)
Q Consensus 126 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 205 (393)
..++.|++-||+++. +-.||..+.+ ..+..+....+... .++.-++.+++..| -+.+-.+|..
T Consensus 163 ~~~~hivvtGsYDg~------vrl~DtR~~~-~~v~elnhg~pVe~-vl~lpsgs~iasAg---------Gn~vkVWDl~ 225 (487)
T KOG0310|consen 163 PANDHIVVTGSYDGK------VRLWDTRSLT-SRVVELNHGCPVES-VLALPSGSLIASAG---------GNSVKVWDLT 225 (487)
T ss_pred cCCCeEEEecCCCce------EEEEEeccCC-ceeEEecCCCceee-EEEcCCCCEEEEcC---------CCeEEEEEec
Confidence 346789999999863 6678887763 23333333211111 22333434444432 2446667765
Q ss_pred CCCeEeCCCCC-CCCCCceEEEE-CCEEEEEccCCCCCCCCCcceeEeeeeccccccCCeEEecc--CCCCCCceeEEEE
Q 016201 206 TRKWDSIPPLP-SPRYSPATQLW-RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIP--IPRGGPHRACFVF 281 (393)
Q Consensus 206 ~~~W~~~~~~p-~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~--~p~~~~~~~~~~~ 281 (393)
+.. +.+..+. ....-.++... ++.-.+.||.+ ..+.+|+. ..|+.+-. +|.+... .++.-
T Consensus 226 ~G~-qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD-----~~VKVfd~---------t~~Kvv~s~~~~~pvLs-iavs~ 289 (487)
T KOG0310|consen 226 TGG-QLLTSMFNHNKTVTCLRLASDSTRLLSGSLD-----RHVKVFDT---------TNYKVVHSWKYPGPVLS-IAVSP 289 (487)
T ss_pred CCc-eehhhhhcccceEEEEEeecCCceEeecccc-----cceEEEEc---------cceEEEEeeecccceee-EEecC
Confidence 432 2222222 11111122222 34555566664 34555553 33444332 3333332 22334
Q ss_pred CCEEEEEcCCCCC
Q 016201 282 NDRLFVVGGQEGD 294 (393)
Q Consensus 282 ~~~iyv~GG~~~~ 294 (393)
++.-.++|..++-
T Consensus 290 dd~t~viGmsnGl 302 (487)
T KOG0310|consen 290 DDQTVVIGMSNGL 302 (487)
T ss_pred CCceEEEecccce
Confidence 7788888887763
No 92
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=83.76 E-value=18 Score=32.17 Aligned_cols=160 Identities=13% Similarity=0.173 Sum_probs=73.0
Q ss_pred HHHhhhccEEEEecCCCCCCCCcccceeeeee---cCCCceEE--ecCCCCCcc----ccccceeEEecCCc----chhh
Q 016201 26 LGAALIADFMWASSSSSFSSSSAHLSVASNWA---LEKSGVVV--IPHVNATKI----DRQRESVAVIDKKG----QDAE 92 (393)
Q Consensus 26 ~~~~~~~~~ly~~GG~~~g~~~~~~~~~~~~d---~~~~~W~~--~~~~~~~~~----~r~~~~~~~~~~~~----~~~~ 92 (393)
+++.+++|+||++=-.+. .++..+...+-|| +..+.|.. |+..+.... .-.-|+.+.+.+.+ ...+
T Consensus 78 mSMGv~~NRLfa~iEtR~-~a~~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnG 156 (367)
T PF12217_consen 78 MSMGVVGNRLFAVIETRT-VASNKMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNG 156 (367)
T ss_dssp B-EEEETTEEEEEEEEEE-TTT--EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-
T ss_pred eeeeeecceeeEEEeehh-hhhhhhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccC
Confidence 356788999988765322 1234555566676 46777854 444443111 12234445554441 1111
Q ss_pred HHhhc---ceeecc---CCCCC-eEEcCC-CCccccCccEEEECCEEEEEecCCCCCCccceEEEEECCCCceEeCCCCC
Q 016201 93 RFLSA---TFADLP---APDLE-WEQMPS-APVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMP 164 (393)
Q Consensus 93 ~~~~~---~~~~~~---~~~~~-W~~~~~-~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~ 164 (393)
+..-. -++.-+ ..... =+++++ ....-+..++-..+++||+.--......+-+.+.+-+.....|+.+. +|
T Consensus 157 D~sPRe~G~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slr-fp 235 (367)
T PF12217_consen 157 DVSPRELGFLYFSDAFASPGVFVRRIIPSEYERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLR-FP 235 (367)
T ss_dssp SSSS-EEEEEEETTTTT-TT--EEEE--GGG-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE--T
T ss_pred CCCcceeeEEEecccccCCcceeeeechhhhccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhcc-cc
Confidence 11111 122211 11111 112221 11222345666789999998544333334467888888999998863 33
Q ss_pred CCCCcceeEEEEeCCEEEEEece
Q 016201 165 KDMAHSHLGVVSDGRYIYIVSGQ 187 (393)
Q Consensus 165 ~~~~r~~~~~~~~~~~iyv~GG~ 187 (393)
..+.....-.+-+++.||+||-.
T Consensus 236 ~nvHhtnlPFakvgD~l~mFgsE 258 (367)
T PF12217_consen 236 NNVHHTNLPFAKVGDVLYMFGSE 258 (367)
T ss_dssp T---SS---EEEETTEEEEEEE-
T ss_pred ccccccCCCceeeCCEEEEEecc
Confidence 43456667778899999999965
No 93
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=83.72 E-value=26 Score=29.80 Aligned_cols=94 Identities=17% Similarity=0.230 Sum_probs=47.2
Q ss_pred cEEEECCEEEEEecCCCCCCccceEEEEECCCCce--EeCC----CCCCCCCcceeEEEEeC-CEEEEEeceeCCCCCCC
Q 016201 123 AAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKW--VDRF----DMPKDMAHSHLGVVSDG-RYIYIVSGQYGPQCRGP 195 (393)
Q Consensus 123 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W--~~~~----~~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~ 195 (393)
+++...+++|++-| +.+|+++...... +.+. .+|. .-.++....+ +++|+|-|
T Consensus 11 A~~~~~g~~y~FkG--------~~~w~~~~~~~~~~p~~I~~~w~~~p~---~IDAa~~~~~~~~~yfFkg--------- 70 (194)
T cd00094 11 AVTTLRGELYFFKG--------RYFWRLSPGKPPGSPFLISSFWPSLPS---PVDAAFERPDTGKIYFFKG--------- 70 (194)
T ss_pred eEEEeCCEEEEEeC--------CEEEEEeCCCCCCCCeEhhhhCCCCCC---CccEEEEECCCCEEEEECC---------
Confidence 44555789999977 3467777542211 1121 1222 2233333333 89999965
Q ss_pred CCeeEEEeCCCCCeE---eCCCCCCC---CCCceEEEE--CCEEEEEccC
Q 016201 196 TSRTFVLDSETRKWD---SIPPLPSP---RYSPATQLW--RGRLHVMGGS 237 (393)
Q Consensus 196 ~~~v~~yd~~~~~W~---~~~~~p~~---r~~~~~~~~--~~~iyv~GG~ 237 (393)
+..|+|+..+.... .+.....+ ..--++... ++++|+|.|.
T Consensus 71 -~~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~ 119 (194)
T cd00094 71 -DKYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGD 119 (194)
T ss_pred -CEEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCC
Confidence 34777876542221 11111111 111122233 6799999874
No 94
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=83.32 E-value=14 Score=28.99 Aligned_cols=84 Identities=13% Similarity=0.090 Sum_probs=54.5
Q ss_pred EECCEEEEEecCCCCCCccceEEEEECCCCceEeCCCC-CCCCCcceeEEEEeCCEEEEEeceeCCCCCCCCCeeEEE-e
Q 016201 126 QIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDM-PKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVL-D 203 (393)
Q Consensus 126 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~-~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~y-d 203 (393)
.++|-||-+.-.... ....+-+||..+++|+.++.. ..........++.++|+|-++.-..... ...-++|.. |
T Consensus 3 cinGvly~~a~~~~~--~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~--~~~~~iWvLeD 78 (129)
T PF08268_consen 3 CINGVLYWLAWSEDS--DNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGE--PDSIDIWVLED 78 (129)
T ss_pred EECcEEEeEEEECCC--CCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCC--cceEEEEEeec
Confidence 457878877665222 236789999999999887532 1122356778888999998886432221 113467766 5
Q ss_pred CCCCCeEeCC
Q 016201 204 SETRKWDSIP 213 (393)
Q Consensus 204 ~~~~~W~~~~ 213 (393)
.++..|++..
T Consensus 79 ~~k~~Wsk~~ 88 (129)
T PF08268_consen 79 YEKQEWSKKH 88 (129)
T ss_pred cccceEEEEE
Confidence 6678898764
No 95
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=82.79 E-value=44 Score=31.67 Aligned_cols=225 Identities=13% Similarity=0.065 Sum_probs=110.2
Q ss_pred HhhhccEEEEecCCCCCCCCcccceeeeeecCCCc--eEEecC----CCCCccccccceeEEecCCcchhhHHhhcceee
Q 016201 28 AALIADFMWASSSSSFSSSSAHLSVASNWALEKSG--VVVIPH----VNATKIDRQRESVAVIDKKGQDAERFLSATFAD 101 (393)
Q Consensus 28 ~~~~~~~ly~~GG~~~g~~~~~~~~~~~~d~~~~~--W~~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (393)
.+..++++|+. ..+| .+..+|+++.. |..... +...+..-. .+...... .+..+++
T Consensus 64 ~~~~dg~v~~~--~~~G-------~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~i~~g~--------~~g~~y~ 125 (370)
T COG1520 64 PADGDGTVYVG--TRDG-------NIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGKIYVGS--------WDGKLYA 125 (370)
T ss_pred cEeeCCeEEEe--cCCC-------cEEEEeCCCCcEEecccCcCcceeccCceEEe-CCeEEEec--------ccceEEE
Confidence 46778888887 2244 78889988877 855333 211111111 12222211 1116888
Q ss_pred ccCCC--CCeEEcCCCCccccCccEEEECCEEEEEecCCCCCCccceEEEEECCC--CceEeCCCCCCCCCcceeEEEEe
Q 016201 102 LPAPD--LEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTD--NKWVDRFDMPKDMAHSHLGVVSD 177 (393)
Q Consensus 102 ~~~~~--~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~--~~W~~~~~~~~~~~r~~~~~~~~ 177 (393)
+|..+ ..|+.-.+.. ++.....+..++.+|+.- ....+.+.|..+ ..|+.-.+.+.+ .+.....+..
T Consensus 126 ld~~~G~~~W~~~~~~~-~~~~~~~v~~~~~v~~~s-------~~g~~~al~~~tG~~~W~~~~~~~~~-~~~~~~~~~~ 196 (370)
T COG1520 126 LDASTGTLVWSRNVGGS-PYYASPPVVGDGTVYVGT-------DDGHLYALNADTGTLKWTYETPAPLS-LSIYGSPAIA 196 (370)
T ss_pred EECCCCcEEEEEecCCC-eEEecCcEEcCcEEEEec-------CCCeEEEEEccCCcEEEEEecCCccc-cccccCceee
Confidence 88843 3786655442 444555566677777743 124577778774 458743222111 1323333366
Q ss_pred CCEEEEEeceeCCCCCCCCCeeEEEeCCCCC--eEeCCCCCCCCCCc--eEEEECCEEEEEccCCCCCCCCCcceeEeee
Q 016201 178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRK--WDSIPPLPSPRYSP--ATQLWRGRLHVMGGSKENRHTPGLEHWSIAV 253 (393)
Q Consensus 178 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~--~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~ 253 (393)
++.+|+-.-. . ...++.+|+++.+ |+.-...+..+..- ...+....||+-++.-.........++
T Consensus 197 ~~~vy~~~~~-~------~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l---- 265 (370)
T COG1520 197 SGTVYVGSDG-Y------DGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCL---- 265 (370)
T ss_pred cceEEEecCC-C------cceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEE----
Confidence 7777776421 0 2268889997665 87532222221111 123333444444431100111223333
Q ss_pred eccccccCCeEEeccCCCCCCceeEEE---ECCEEEEEcCC
Q 016201 254 KDGKALEKAWRTEIPIPRGGPHRACFV---FNDRLFVVGGQ 291 (393)
Q Consensus 254 ~d~~~~~~~W~~~~~~p~~~~~~~~~~---~~~~iyv~GG~ 291 (393)
+.+..+..|+...++.......-.+. -++++|+....
T Consensus 266 -~~~~G~~~W~~~~~~~~~~~~~~~~~~~~~dG~v~~~~~~ 305 (370)
T COG1520 266 -DADTGELIWSFPAGGSVQGSGLYTTPVAGADGKVYIGFTD 305 (370)
T ss_pred -EcCCCceEEEEecccEeccCCeeEEeecCCCccEEEEEec
Confidence 33346677887665322222111112 37788887543
No 96
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=82.14 E-value=35 Score=30.11 Aligned_cols=117 Identities=13% Similarity=0.172 Sum_probs=63.6
Q ss_pred CceEeCCCCCC---CCC-cceeEEEEeCCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCCCCCCCCCceEEEEC-C
Q 016201 155 NKWVDRFDMPK---DMA-HSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWR-G 229 (393)
Q Consensus 155 ~~W~~~~~~~~---~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~-~ 229 (393)
..|+...|+.. +++ ...+.+.-..|.|+..|| -..+++.|.++.+-+..=. -..-+-|+++.-+ +
T Consensus 99 ~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgG---------D~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~R~~~ 168 (325)
T KOG0649|consen 99 RLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGG---------DGVIYQVDLEDGRIQREYR-GHTDYVHSVVGRNAN 168 (325)
T ss_pred hhhhhcCccccCcccCCccceeEeccCCCcEEEecC---------CeEEEEEEecCCEEEEEEc-CCcceeeeeeecccC
Confidence 45887776644 222 223333335788888887 3458889999988765421 1122444444321 2
Q ss_pred EEEEEccCCCCCCCCCcceeEeeeeccccccCCeEEe-cc-----CCCCCCc--eeEEEECCEEEEEcCCCC
Q 016201 230 RLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTE-IP-----IPRGGPH--RACFVFNDRLFVVGGQEG 293 (393)
Q Consensus 230 ~iyv~GG~~~~~~~~~~~~~~~~~~d~~~~~~~W~~~-~~-----~p~~~~~--~~~~~~~~~iyv~GG~~~ 293 (393)
-=++.|+. +..+..|+. .+.+=.++ .+ +.++..+ .++...+..-+++||...
T Consensus 169 ~qilsG~E-----DGtvRvWd~-------kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~ 228 (325)
T KOG0649|consen 169 GQILSGAE-----DGTVRVWDT-------KTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPK 228 (325)
T ss_pred cceeecCC-----CccEEEEec-------cccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCc
Confidence 22334544 456777874 44444332 22 2232232 266667777888887543
No 97
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=81.96 E-value=47 Score=31.55 Aligned_cols=102 Identities=8% Similarity=-0.009 Sum_probs=57.6
Q ss_pred CCceEeCCCCCCCCCcceeEEEEeCCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCCCC-----CC--CCCceEEE
Q 016201 154 DNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLP-----SP--RYSPATQL 226 (393)
Q Consensus 154 ~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p-----~~--r~~~~~~~ 226 (393)
.+.|+.+.... ...--++.++|++|++.- ...++.++.+-. =+++.+.. .. +.....+.
T Consensus 189 ~~~Wt~l~~~~----~~~~DIi~~kGkfYAvD~---------~G~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVE 254 (373)
T PLN03215 189 GNVLKALKQMG----YHFSDIIVHKGQTYALDS---------IGIVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVE 254 (373)
T ss_pred CCeeeEccCCC----ceeeEEEEECCEEEEEcC---------CCeEEEEecCCc-eeeecceecccccCCcccCceeEEE
Confidence 48999987432 335578889999999931 234666664321 12222211 11 12234667
Q ss_pred ECCEEEEEccCCCCCCC-------CCcceeEeeeeccccccCCeEEeccC
Q 016201 227 WRGRLHVMGGSKENRHT-------PGLEHWSIAVKDGKALEKAWRTEIPI 269 (393)
Q Consensus 227 ~~~~iyv~GG~~~~~~~-------~~~~~~~~~~~d~~~~~~~W~~~~~~ 269 (393)
..|+|+++......... .......+.+|..|.+..+|.++..+
T Consensus 255 s~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sL 304 (373)
T PLN03215 255 CCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTL 304 (373)
T ss_pred ECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEeccc
Confidence 78899999774321100 01122345666667778899887665
No 98
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=81.28 E-value=33 Score=30.97 Aligned_cols=61 Identities=13% Similarity=0.267 Sum_probs=41.2
Q ss_pred cceEEEEECCCCceEeCCCCCCCCCcceeEEEEeCCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCC
Q 016201 144 HSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP 213 (393)
Q Consensus 144 ~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~ 213 (393)
..++.+|||....|.+-+ ||...+|...--+--.+.+++.- ...+.+.+|||++.+.+.++
T Consensus 253 ~g~l~rfdPs~~sW~eyp-LPgs~arpys~rVD~~grVW~se--------a~agai~rfdpeta~ftv~p 313 (353)
T COG4257 253 TGSLHRFDPSVTSWIEYP-LPGSKARPYSMRVDRHGRVWLSE--------ADAGAIGRFDPETARFTVLP 313 (353)
T ss_pred CceeeEeCcccccceeee-CCCCCCCcceeeeccCCcEEeec--------cccCceeecCcccceEEEec
Confidence 367999999999998743 44433344433333456677642 22567999999999988865
No 99
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=80.52 E-value=42 Score=31.07 Aligned_cols=201 Identities=15% Similarity=0.266 Sum_probs=83.3
Q ss_pred eEEEEeCCEEEEEeceeCCCC--CCCCCeeEEE-eCCCCCeEeCCC-----CCCC---CCCceEEEECCEEEEEccCCCC
Q 016201 172 LGVVSDGRYIYIVSGQYGPQC--RGPTSRTFVL-DSETRKWDSIPP-----LPSP---RYSPATQLWRGRLHVMGGSKEN 240 (393)
Q Consensus 172 ~~~~~~~~~iyv~GG~~~~~~--~~~~~~v~~y-d~~~~~W~~~~~-----~p~~---r~~~~~~~~~~~iyv~GG~~~~ 240 (393)
.+++.+++.|+++....-... ......+..+ .....+|+.... -... ....+.++-+++||++-|....
T Consensus 2 PSLV~vgGvv~AvAEa~~~~~~~~~~~~ias~~~~~~g~tw~~~~~~~~~~~~~~~v~v~rPTtvvkgn~IymLvG~y~~ 81 (310)
T PF13859_consen 2 PSLVEVGGVVFAVAEAQCKKSNDSGFTDIASEYSTDNGETWKAEVAVLNDDGSKKRVDVSRPTTVVKGNKIYMLVGSYSR 81 (310)
T ss_dssp EEEEEETTEEEEEEEEESS-S-SSS-EEEEEEEESSSSSS-EEEEEE----SS-TT-EEEEEEEEEETTEEEEEEEEESS
T ss_pred CCEEEECCEEEEEEEEEEccCCCCCceeEEEeEeeccccccccceeeecccccccccccceeeeeecceeEEEEEEEEec
Confidence 367788999999975442211 1112222333 344567876431 1111 1234566789999988765332
Q ss_pred CCCCCcceeEeeeeccccccCCeEEeccCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccc-ee-cCceE
Q 016201 241 RHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHE-VV-YGDVY 318 (393)
Q Consensus 241 ~~~~~~~~~~~~~~d~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~-~~-~~~v~ 318 (393)
.. ....|.+..+.-+....+|.....++....... +-++-||-.+--..+ +..-++.....+ .- ...+.
T Consensus 82 ~~--~~~~~~llLvks~~~g~~W~~~~~l~~~~~~~~------~~figgGGSGV~m~d-GTLVFPv~a~~~~~~~~~SlI 152 (310)
T PF13859_consen 82 SA--GADDWGLLLVKSTDGGIKWGDTKSLPSTSFQSW------KQFIGGGGSGVVMED-GTLVFPVQATKKNGDGTVSLI 152 (310)
T ss_dssp ----SSTTEEEEEEEEESSSSEE---EE-GGGS-EEE------EEEEE-SEE-EE-TT-S-EEEEEEEEETT---EEEEE
T ss_pred cc--cccccceeeeeccCCcceeeecccCCchhcccc------ceeecCCCCceEEcC-CCEEEEEeeeccCccceEEEE
Confidence 11 333556554442334446988766654322100 012322211100000 000001110000 00 12244
Q ss_pred EeC--CCCCeEECCCCCCCCCCcceeEEEE-CCEEEEEcCcCCCCCcccceEEEEEEEeec--CCCcccc---ccccccC
Q 016201 319 MLD--DEMKWKVLPPMPKPNSHIECAWVIV-NNSIIITGGTTEKHPMTKRMILVGEVFQFH--LDSLPSL---QSRFWGS 390 (393)
Q Consensus 319 ~yd--~~~~W~~~~~~~~~r~~~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~~~y~~~--~~~W~~~---~~~~~~~ 390 (393)
.|. ....|+.-..++.. .+....++-. +++|+++.-+.+... .+|... ..+|+.. -++-|++
T Consensus 153 iYS~d~g~~W~lskg~s~~-gC~~psv~EWe~gkLlM~~~c~~g~r---------rVYeS~DmG~tWtea~gtlsrVw~n 222 (310)
T PF13859_consen 153 IYSTDDGKTWKLSKGMSPA-GCSDPSVVEWEDGKLLMMTACDDGRR---------RVYESGDMGTTWTEALGTLSRVWGN 222 (310)
T ss_dssp EEESSTTSS-EE-S----T-T-EEEEEEEE-TTEEEEEEE-TTS------------EEEESSTTSS-EE-TTTTTT---S
T ss_pred EEECCCccceEeccccCCC-CcceEEEEeccCCeeEEEEecccceE---------EEEEEcccceehhhccCccceeecc
Confidence 554 35699987777654 3445667888 899999966544322 255544 4679873 4566776
Q ss_pred C
Q 016201 391 H 391 (393)
Q Consensus 391 ~ 391 (393)
.
T Consensus 223 s 223 (310)
T PF13859_consen 223 S 223 (310)
T ss_dssp S
T ss_pred c
Confidence 5
No 100
>PRK05137 tolB translocation protein TolB; Provisional
Probab=79.58 E-value=63 Score=31.41 Aligned_cols=64 Identities=14% Similarity=0.168 Sum_probs=39.7
Q ss_pred ceEEEEECCCCceEeCCCCCCCCCcceeEEEEeCCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCCCC
Q 016201 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLP 216 (393)
Q Consensus 145 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p 216 (393)
..++++|+.+.+.+.+...+.. .......-.+.+|++....++ ..+++.+|..+..-+.+...+
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g~--~~~~~~SPDG~~la~~~~~~g------~~~Iy~~d~~~~~~~~Lt~~~ 289 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPGM--TFAPRFSPDGRKVVMSLSQGG------NTDIYTMDLRSGTTTRLTDSP 289 (435)
T ss_pred CEEEEEECCCCcEEEeecCCCc--ccCcEECCCCCEEEEEEecCC------CceEEEEECCCCceEEccCCC
Confidence 5799999999988887765542 122222223445554432221 467999999988877776433
No 101
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=79.57 E-value=60 Score=31.12 Aligned_cols=63 Identities=11% Similarity=0.203 Sum_probs=37.6
Q ss_pred ceEEEEECCCCceEeCCCCCCCCCcceeEEEEeCCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCCC
Q 016201 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPL 215 (393)
Q Consensus 145 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~ 215 (393)
..++++|+.+.+-+.+...+.. ....+..-.+..|++....++ ..+++.+|..+...+.+...
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~--~~~~~~spDg~~l~~~~~~~~------~~~i~~~d~~~~~~~~l~~~ 276 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGM--NGAPAFSPDGSKLAVSLSKDG------NPDIYVMDLDGKQLTRLTNG 276 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCC--ccceEECCCCCEEEEEECCCC------CccEEEEECCCCCEEECCCC
Confidence 5689999998877666554431 222222222345655532211 35799999998887777543
No 102
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=79.39 E-value=55 Score=32.87 Aligned_cols=97 Identities=19% Similarity=0.318 Sum_probs=55.1
Q ss_pred ccEEEECCEEEEEecCCCCCCccceEEEEECCCC--ceEeCCCCCCCCC------cceeEEEEeCCEEEEEeceeCCCCC
Q 016201 122 GAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDN--KWVDRFDMPKDMA------HSHLGVVSDGRYIYIVSGQYGPQCR 193 (393)
Q Consensus 122 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~~~------r~~~~~~~~~~~iyv~GG~~~~~~~ 193 (393)
.+.++.++.||+.... ..+..+|..+. .|+.-...+.... ...-++++.+++||+...
T Consensus 63 stPvv~~g~vyv~s~~-------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~------- 128 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSY-------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL------- 128 (527)
T ss_pred cCCEEECCEEEEECCC-------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-------
Confidence 3446679999996442 34788888764 4875433322110 011234667888887532
Q ss_pred CCCCeeEEEeCCCCC--eEeCC-CCCCC-CCCceEEEECCEEEEE
Q 016201 194 GPTSRTFVLDSETRK--WDSIP-PLPSP-RYSPATQLWRGRLHVM 234 (393)
Q Consensus 194 ~~~~~v~~yd~~~~~--W~~~~-~~p~~-r~~~~~~~~~~~iyv~ 234 (393)
...+.++|.++.+ |+.-. ..... ....+-++.+++||+-
T Consensus 129 --dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg 171 (527)
T TIGR03075 129 --DARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITG 171 (527)
T ss_pred --CCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEe
Confidence 3458999998766 76532 22211 1222345678887775
No 103
>PRK04792 tolB translocation protein TolB; Provisional
Probab=77.58 E-value=75 Score=31.14 Aligned_cols=62 Identities=16% Similarity=0.214 Sum_probs=39.0
Q ss_pred ceEEEEECCCCceEeCCCCCCCCCcceeEEEEeCCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCC
Q 016201 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP 214 (393)
Q Consensus 145 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 214 (393)
..++++|+.+.+-+.+...+.. .......-.+.+|++....++ ..+++.+|..+.+.+++..
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~--~~~~~wSPDG~~La~~~~~~g------~~~Iy~~dl~tg~~~~lt~ 303 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGI--NGAPRFSPDGKKLALVLSKDG------QPEIYVVDIATKALTRITR 303 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCC--cCCeeECCCCCEEEEEEeCCC------CeEEEEEECCCCCeEECcc
Confidence 5799999998887777655431 122222223445655542221 4679999999988887764
No 104
>PLN00181 protein SPA1-RELATED; Provisional
Probab=77.21 E-value=77 Score=33.67 Aligned_cols=48 Identities=15% Similarity=0.191 Sum_probs=24.3
Q ss_pred CeeEEEeCCCCCeEeCCCCCC-CCCCceEEEE--CCEEEEEccCCCCCCCCCcceeEe
Q 016201 197 SRTFVLDSETRKWDSIPPLPS-PRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSI 251 (393)
Q Consensus 197 ~~v~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~ 251 (393)
..+..||..+.+- +..+.. ...-.+++.. ++.+++.||.+ ..+..|++
T Consensus 555 g~v~lWd~~~~~~--~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~D-----g~v~iWd~ 605 (793)
T PLN00181 555 GVVQVWDVARSQL--VTEMKEHEKRVWSIDYSSADPTLLASGSDD-----GSVKLWSI 605 (793)
T ss_pred CeEEEEECCCCeE--EEEecCCCCCEEEEEEcCCCCCEEEEEcCC-----CEEEEEEC
Confidence 3477788876542 222211 1112223332 45677777764 45677775
No 105
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=77.16 E-value=15 Score=32.96 Aligned_cols=152 Identities=14% Similarity=0.188 Sum_probs=71.9
Q ss_pred CCEEEEEe--cCCCCC-CccceEEEEECC-CCceEeCCCCCCC----C--CcceeEEEEeCCEEEEEeceeCCCCCCCCC
Q 016201 128 KNLFYVFA--GYGSLD-YVHSHVDVYNFT-DNKWVDRFDMPKD----M--AHSHLGVVSDGRYIYIVSGQYGPQCRGPTS 197 (393)
Q Consensus 128 ~~~iyv~G--G~~~~~-~~~~~~~~yd~~-~~~W~~~~~~~~~----~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 197 (393)
+++|+++. +..... ....-.+..... ..+|+....++.. . .-....+...++.+++.. +.... ....
T Consensus 58 ~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~~~~~~~i~~~~G~l~~~~-~~~~~--~~~~ 134 (275)
T PF13088_consen 58 DGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSGPGRGPPIQLPDGRLIAPY-YHESG--GSFS 134 (275)
T ss_dssp TSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEECSEEEEEEECTTEEEEEE-EEESS--CEEE
T ss_pred CCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceeccceeeeeEecCCCEEEEE-eeccc--cCcc
Confidence 78888886 222211 111111244444 5789886543321 0 111222455588888872 22211 1122
Q ss_pred eeEEE-eCCCCCeEeCCCCC-CCCCCceEEE--ECCEEEEEccCCCCCCCCCcceeEeeeeccccccCCeEEec--cCCC
Q 016201 198 RTFVL-DSETRKWDSIPPLP-SPRYSPATQL--WRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEI--PIPR 271 (393)
Q Consensus 198 ~v~~y-d~~~~~W~~~~~~p-~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~--~~p~ 271 (393)
.+..| +-.-.+|+.....+ .......+.+ -+++|+++--.... . ..+-..-- ....+|+... .+|.
T Consensus 135 ~~~~~S~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~~~---~--~~~~~~S~---D~G~TWs~~~~~~~~~ 206 (275)
T PF13088_consen 135 AFVYYSDDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTEGN---D--DIYISRST---DGGRTWSPPQPTNLPN 206 (275)
T ss_dssp EEEEEESSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEECSS---T--EEEEEEES---STTSS-EEEEEEECSS
T ss_pred eEEEEeCCCCceeeccccccccCCcceeEEEECCCCcEEEEEEccCC---C--cEEEEEEC---CCCCcCCCceecccCc
Confidence 33334 44456698887653 2233333333 26788887533110 1 22221111 2577899865 4555
Q ss_pred CCCceeEEEE-CCEEEEEcC
Q 016201 272 GGPHRACFVF-NDRLFVVGG 290 (393)
Q Consensus 272 ~~~~~~~~~~-~~~iyv~GG 290 (393)
.......+.+ +++++++..
T Consensus 207 ~~~~~~~~~~~~g~~~~~~~ 226 (275)
T PF13088_consen 207 PNSSISLVRLSDGRLLLVYN 226 (275)
T ss_dssp CCEEEEEEECTTSEEEEEEE
T ss_pred ccCCceEEEcCCCCEEEEEE
Confidence 5544444443 668888776
No 106
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=76.58 E-value=67 Score=30.11 Aligned_cols=97 Identities=18% Similarity=0.113 Sum_probs=49.6
Q ss_pred EEecCCCCCCccceEEEEECCCCceEeCCCCCCCCCcceeEEEEeCCEEEEEeceeCCCCCCCCCeeEEEeCCC--CCeE
Q 016201 133 VFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSET--RKWD 210 (393)
Q Consensus 133 v~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~--~~W~ 210 (393)
.+|++.....---.++.||.++.+++.+........-...+..-.++.||+..... .....+..|.... .+.+
T Consensus 3 ~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~-----~~~g~v~~~~i~~~~g~L~ 77 (345)
T PF10282_consen 3 YVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGS-----GDSGGVSSYRIDPDTGTLT 77 (345)
T ss_dssp EEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTS-----STTTEEEEEEEETTTTEEE
T ss_pred EEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccc-----cCCCCEEEEEECCCcceeE
Confidence 34555432221123566677999998876433221122333333578899996432 0134455555444 5777
Q ss_pred eCCCCCCCCCCceEEEE---CCEEEEE
Q 016201 211 SIPPLPSPRYSPATQLW---RGRLHVM 234 (393)
Q Consensus 211 ~~~~~p~~r~~~~~~~~---~~~iyv~ 234 (393)
.+...+......+.+.+ +..||+.
T Consensus 78 ~~~~~~~~g~~p~~i~~~~~g~~l~va 104 (345)
T PF10282_consen 78 LLNSVPSGGSSPCHIAVDPDGRFLYVA 104 (345)
T ss_dssp EEEEEEESSSCEEEEEECTTSSEEEEE
T ss_pred EeeeeccCCCCcEEEEEecCCCEEEEE
Confidence 77655533333333333 4456665
No 107
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=76.32 E-value=74 Score=31.98 Aligned_cols=97 Identities=14% Similarity=0.224 Sum_probs=50.2
Q ss_pred eEEEECCEEEEEccCCCCCCCCCcceeEeeeeccccccCCeEEeccCCCCC--------CceeEEEECCEEEEEcCCCCC
Q 016201 223 ATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGG--------PHRACFVFNDRLFVVGGQEGD 294 (393)
Q Consensus 223 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~p~~~--------~~~~~~~~~~~iyv~GG~~~~ 294 (393)
+-++.++.||+.... ..+.++| .+.....|+.-...+... ...+.+..+++||+.. .++
T Consensus 64 tPvv~~g~vyv~s~~------g~v~AlD-----a~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t-~dg- 130 (527)
T TIGR03075 64 QPLVVDGVMYVTTSY------SRVYALD-----AKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGT-LDA- 130 (527)
T ss_pred CCEEECCEEEEECCC------CcEEEEE-----CCCCceeeEecCCCCcccccccccccccccceEECCEEEEEc-CCC-
Confidence 346779999986432 2333333 223456687644322111 1123455678888643 222
Q ss_pred CCCCCCCCccccccccceecCceEEeC-CCC--CeEECC-CCCCCCCCcceeEEEECCEEEEEc
Q 016201 295 FMAKPGSPIFKCSRRHEVVYGDVYMLD-DEM--KWKVLP-PMPKPNSHIECAWVIVNNSIIITG 354 (393)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~--~W~~~~-~~~~~r~~~~~~~~~~~~~i~v~G 354 (393)
.++.+| .+. .|+.-. .+.. ......+-++.+++||+..
T Consensus 131 ---------------------~l~ALDa~TGk~~W~~~~~~~~~-~~~~tssP~v~~g~Vivg~ 172 (527)
T TIGR03075 131 ---------------------RLVALDAKTGKVVWSKKNGDYKA-GYTITAAPLVVKGKVITGI 172 (527)
T ss_pred ---------------------EEEEEECCCCCEEeecccccccc-cccccCCcEEECCEEEEee
Confidence 288998 432 887632 2211 1112233467788887753
No 108
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=75.44 E-value=68 Score=29.63 Aligned_cols=92 Identities=12% Similarity=0.099 Sum_probs=44.3
Q ss_pred EEEEEecCCCCCCccceEEEEECCC-CceEeCCCCCCCCCcceeEEEEeCCEEEEEeceeCCCCCCCCCeeEEEeCC-CC
Q 016201 130 LFYVFAGYGSLDYVHSHVDVYNFTD-NKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSE-TR 207 (393)
Q Consensus 130 ~iyv~GG~~~~~~~~~~~~~yd~~~-~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~-~~ 207 (393)
++|+..+.+ ..+..||..+ .+++.+..++....-...++.-.+..+|+.+.. ...+..|+.. +.
T Consensus 3 ~~y~~~~~~------~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~--------~~~i~~~~~~~~g 68 (330)
T PRK11028 3 IVYIASPES------QQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRP--------EFRVLSYRIADDG 68 (330)
T ss_pred EEEEEcCCC------CCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECC--------CCcEEEEEECCCC
Confidence 578875433 4577788754 577766555432111122222224567775431 3446667665 44
Q ss_pred CeEeCCCCCCCCCCceEEEE-CC-EEEEEc
Q 016201 208 KWDSIPPLPSPRYSPATQLW-RG-RLHVMG 235 (393)
Q Consensus 208 ~W~~~~~~p~~r~~~~~~~~-~~-~iyv~G 235 (393)
+++.+...+.+..-+.++.. ++ .||+..
T Consensus 69 ~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~ 98 (330)
T PRK11028 69 ALTFAAESPLPGSPTHISTDHQGRFLFSAS 98 (330)
T ss_pred ceEEeeeecCCCCceEEEECCCCCEEEEEE
Confidence 56655433332221222222 34 466653
No 109
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=74.88 E-value=30 Score=33.05 Aligned_cols=122 Identities=10% Similarity=0.133 Sum_probs=62.0
Q ss_pred HHHHHhhhccEEEEecCCCCCCCCcccceeeeeecCCCceEEecCCCCCccccccceeEEecCCcchhhHHhhc-ceeec
Q 016201 24 GLLGAALIADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQDAERFLSA-TFADL 102 (393)
Q Consensus 24 ~~~~~~~~~~~ly~~GG~~~g~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~ 102 (393)
.+.++++.-|-+...-|..++ .+..||.++++ .+...+.. -...-...+.++|+-.....++ .|..+
T Consensus 349 ~~ts~~fHpDgLifgtgt~d~-------~vkiwdlks~~--~~a~Fpgh---t~~vk~i~FsENGY~Lat~add~~V~lw 416 (506)
T KOG0289|consen 349 EYTSAAFHPDGLIFGTGTPDG-------VVKIWDLKSQT--NVAKFPGH---TGPVKAISFSENGYWLATAADDGSVKLW 416 (506)
T ss_pred eeEEeeEcCCceEEeccCCCc-------eEEEEEcCCcc--ccccCCCC---CCceeEEEeccCceEEEEEecCCeEEEE
Confidence 345556655544433344366 78899988877 55554432 2222222333333322111222 25666
Q ss_pred cCCCCCeEEcCCCCccc-cCccEEEEC--CEEEEEecCCCCCCccceEEEEECCCCceEeCCCCCC
Q 016201 103 PAPDLEWEQMPSAPVPR-LDGAAIQIK--NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK 165 (393)
Q Consensus 103 ~~~~~~W~~~~~~~~~r-~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~ 165 (393)
|....+ .....+.+- .......++ ++..+++|.+ -.|+.|+-.++.|+.+..++.
T Consensus 417 DLRKl~--n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~------l~Vy~~~k~~k~W~~~~~~~~ 474 (506)
T KOG0289|consen 417 DLRKLK--NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSD------LQVYICKKKTKSWTEIKELAD 474 (506)
T ss_pred Eehhhc--ccceeeccccccceeEEEcCCCCeEEeecce------eEEEEEecccccceeeehhhh
Confidence 654332 222222221 122333333 5666677532 347778888999999877765
No 110
>PRK00178 tolB translocation protein TolB; Provisional
Probab=74.23 E-value=87 Score=30.28 Aligned_cols=63 Identities=14% Similarity=0.197 Sum_probs=38.1
Q ss_pred ceEEEEECCCCceEeCCCCCCCCCcceeEEEEeCCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCCC
Q 016201 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPL 215 (393)
Q Consensus 145 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~ 215 (393)
..++++|+.+.+-+.+...+.. .......-.+.+|++..-.++ ..+++.+|..+...+++...
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~--~~~~~~SpDG~~la~~~~~~g------~~~Iy~~d~~~~~~~~lt~~ 285 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGL--NGAPAWSPDGSKLAFVLSKDG------NPEIYVMDLASRQLSRVTNH 285 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCC--cCCeEECCCCCEEEEEEccCC------CceEEEEECCCCCeEEcccC
Confidence 4799999999888777654431 111222222345554432111 35799999999988877643
No 111
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=73.87 E-value=1.1e+02 Score=32.20 Aligned_cols=15 Identities=7% Similarity=-0.139 Sum_probs=11.2
Q ss_pred ceEEEECCEEEEEcc
Q 016201 222 PATQLWRGRLHVMGG 236 (393)
Q Consensus 222 ~~~~~~~~~iyv~GG 236 (393)
.+-+++++.||+...
T Consensus 188 ~TPlvvgg~lYv~t~ 202 (764)
T TIGR03074 188 ATPLKVGDTLYLCTP 202 (764)
T ss_pred cCCEEECCEEEEECC
Confidence 344678999999854
No 112
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=73.86 E-value=64 Score=28.56 Aligned_cols=129 Identities=19% Similarity=0.242 Sum_probs=70.1
Q ss_pred CCEEEEEecCCCCCCccceEEEEECCCCceEeCCCCCCCCCcceeEEEEeCCE-EEEEeceeCCCCCCCCCeeEEEeCCC
Q 016201 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRY-IYIVSGQYGPQCRGPTSRTFVLDSET 206 (393)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~v~~yd~~~ 206 (393)
.+.|+..||- ..+++.|+++.+-++.-.-.. -+-|+++.-+.. =.+.|+.++ .+-.+|..|
T Consensus 126 enSi~~AgGD-------~~~y~~dlE~G~i~r~~rGHt---DYvH~vv~R~~~~qilsG~EDG--------tvRvWd~kt 187 (325)
T KOG0649|consen 126 ENSILFAGGD-------GVIYQVDLEDGRIQREYRGHT---DYVHSVVGRNANGQILSGAEDG--------TVRVWDTKT 187 (325)
T ss_pred CCcEEEecCC-------eEEEEEEecCCEEEEEEcCCc---ceeeeeeecccCcceeecCCCc--------cEEEEeccc
Confidence 5778888873 468899999999876432222 344555553322 233444333 366678887
Q ss_pred CCeEeC-C-----CCCCCCCCc--eEEEECCEEEEEccCCCCCCCCCcceeEeeeeccccccCCeEEeccCCCCCCceeE
Q 016201 207 RKWDSI-P-----PLPSPRYSP--ATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRAC 278 (393)
Q Consensus 207 ~~W~~~-~-----~~p~~r~~~--~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~p~~~~~~~~ 278 (393)
.+-.++ . .+.+|..+. .+...+..-.|+||- +....|++ ...+=+.+-|.|..-. -+
T Consensus 188 ~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG------p~lslwhL-------rsse~t~vfpipa~v~--~v 252 (325)
T KOG0649|consen 188 QKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG------PKLSLWHL-------RSSESTCVFPIPARVH--LV 252 (325)
T ss_pred cceeEEeccccChhhcCcccCceeEEEeccCceEEecCC------CceeEEec-------cCCCceEEEeccccee--Ee
Confidence 776443 2 222332332 555666777788873 45566775 3333334444554332 33
Q ss_pred EEECCEEEEEc
Q 016201 279 FVFNDRLFVVG 289 (393)
Q Consensus 279 ~~~~~~iyv~G 289 (393)
.-.++.+++.|
T Consensus 253 ~F~~d~vl~~G 263 (325)
T KOG0649|consen 253 DFVDDCVLIGG 263 (325)
T ss_pred eeecceEEEec
Confidence 33455555544
No 113
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=73.46 E-value=1e+02 Score=30.64 Aligned_cols=34 Identities=18% Similarity=0.146 Sum_probs=20.1
Q ss_pred eEEeC-CC--CCeEECCCCCCCCCCcceeEEEECCEEEEE
Q 016201 317 VYMLD-DE--MKWKVLPPMPKPNSHIECAWVIVNNSIIIT 353 (393)
Q Consensus 317 v~~yd-~~--~~W~~~~~~~~~r~~~~~~~~~~~~~i~v~ 353 (393)
++.+| .+ ..|+. +++.+... ...+...++++||.
T Consensus 418 l~ald~~tG~~lW~~--~~~~~~~a-~P~~~~~~g~~yv~ 454 (488)
T cd00216 418 FRAFDATTGKELWKF--RTPSGIQA-TPMTYEVNGKQYVG 454 (488)
T ss_pred EEEEECCCCceeeEE--ECCCCceE-cCEEEEeCCEEEEE
Confidence 89999 43 28885 33433322 12223569999987
No 114
>PRK04922 tolB translocation protein TolB; Provisional
Probab=73.43 E-value=93 Score=30.23 Aligned_cols=62 Identities=15% Similarity=0.200 Sum_probs=38.1
Q ss_pred ceEEEEECCCCceEeCCCCCCCCCcceeEEEEeCCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCC
Q 016201 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP 214 (393)
Q Consensus 145 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 214 (393)
..++++|+.+.+-+.+...+.. .......-.+.+|++....++ ..+++.+|+.+..-+++..
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~g~--~~~~~~SpDG~~l~~~~s~~g------~~~Iy~~d~~~g~~~~lt~ 289 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFRGI--NGAPSFSPDGRRLALTLSRDG------NPEIYVMDLGSRQLTRLTN 289 (433)
T ss_pred cEEEEEECCCCCEEEeccCCCC--ccCceECCCCCEEEEEEeCCC------CceEEEEECCCCCeEECcc
Confidence 5689999998888777665431 122222223445655432221 3579999999887766654
No 115
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=72.99 E-value=83 Score=29.47 Aligned_cols=60 Identities=13% Similarity=0.100 Sum_probs=33.9
Q ss_pred eEEEEe-CCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCC
Q 016201 172 LGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKE 239 (393)
Q Consensus 172 ~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 239 (393)
++++.. ++.+.+.||-+. ..+.++..+..|--.-.--..-.......+++.+++.|+.++
T Consensus 68 Favsl~P~~~l~aTGGgDD--------~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG 128 (399)
T KOG0296|consen 68 FAVSLHPNNNLVATGGGDD--------LAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSG 128 (399)
T ss_pred EEEEeCCCCceEEecCCCc--------eEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCc
Confidence 344444 677888887543 356677777764321111111122234466888888888754
No 116
>PRK04922 tolB translocation protein TolB; Provisional
Probab=71.06 E-value=1.1e+02 Score=29.85 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=16.0
Q ss_pred CCeeEEEeCCCCCeEeCCCCC
Q 016201 196 TSRTFVLDSETRKWDSIPPLP 216 (393)
Q Consensus 196 ~~~v~~yd~~~~~W~~~~~~p 216 (393)
...++++|..+.+-+.+...+
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~ 247 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFR 247 (433)
T ss_pred CcEEEEEECCCCCEEEeccCC
Confidence 456999999888877776554
No 117
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.90 E-value=76 Score=28.15 Aligned_cols=47 Identities=15% Similarity=0.232 Sum_probs=27.8
Q ss_pred EEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCC----------------CCCCCCCCceEEEECCEEEEE
Q 016201 180 YIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP----------------PLPSPRYSPATQLWRGRLHVM 234 (393)
Q Consensus 180 ~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~----------------~~p~~r~~~~~~~~~~~iyv~ 234 (393)
+-++.||++. +-.+|.||-. +|..-. ....++...+.+.-++++++.
T Consensus 176 krlvSgGcDn------~VkiW~~~~~--~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIw 238 (299)
T KOG1332|consen 176 KRLVSGGCDN------LVKIWKFDSD--SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIW 238 (299)
T ss_pred ceeeccCCcc------ceeeeecCCc--chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEE
Confidence 4578888754 4456666653 664432 233556656666667776666
No 118
>PRK03629 tolB translocation protein TolB; Provisional
Probab=70.65 E-value=1.1e+02 Score=29.80 Aligned_cols=169 Identities=9% Similarity=-0.010 Sum_probs=79.3
Q ss_pred ceeeccCCCCCeEEcCCCCccccCccEEEECC-EEEEEecCCCCCCccceEEEEECCCCceEeCCCCCCCCCcceeEEEE
Q 016201 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKN-LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS 176 (393)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~ 176 (393)
.++.++..+.+-+.+...+..-. .....-++ +|++.....+ ..+++.+|+.+.+.+++...... ... ....
T Consensus 224 ~i~i~dl~~G~~~~l~~~~~~~~-~~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~lt~~~~~--~~~-~~wS 295 (429)
T PRK03629 224 ALVIQTLANGAVRQVASFPRHNG-APAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDGRSN--NTE-PTWF 295 (429)
T ss_pred EEEEEECCCCCeEEccCCCCCcC-CeEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEccCCCCC--cCc-eEEC
Confidence 56777776666555554432111 11122244 4555433322 14589999999888777544321 112 2222
Q ss_pred eCCE-EEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceeEeeeec
Q 016201 177 DGRY-IYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKD 255 (393)
Q Consensus 177 ~~~~-iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~d 255 (393)
-+++ |+...... ...+++.+|+.+..-+++..... ........-+++.+++.+.... ...+..++
T Consensus 296 PDG~~I~f~s~~~------g~~~Iy~~d~~~g~~~~lt~~~~-~~~~~~~SpDG~~Ia~~~~~~g--~~~I~~~d----- 361 (429)
T PRK03629 296 PDSQNLAYTSDQA------GRPQVYKVNINGGAPQRITWEGS-QNQDADVSSDGKFMVMVSSNGG--QQHIAKQD----- 361 (429)
T ss_pred CCCCEEEEEeCCC------CCceEEEEECCCCCeEEeecCCC-CccCEEECCCCCEEEEEEccCC--CceEEEEE-----
Confidence 3444 44333211 13578888998876666542211 1111222234544444332211 11222233
Q ss_pred cccccCCeEEeccCCCCCCceeEEEECCEEEEEcCCC
Q 016201 256 GKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQE 292 (393)
Q Consensus 256 ~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~ 292 (393)
..+.+++.+..... .. .-...-+++.+++.+..
T Consensus 362 --l~~g~~~~Lt~~~~-~~-~p~~SpDG~~i~~~s~~ 394 (429)
T PRK03629 362 --LATGGVQVLTDTFL-DE-TPSIAPNGTMVIYSSSQ 394 (429)
T ss_pred --CCCCCeEEeCCCCC-CC-CceECCCCCEEEEEEcC
Confidence 46666766653211 11 12334577766666544
No 119
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=70.62 E-value=86 Score=28.68 Aligned_cols=184 Identities=16% Similarity=0.124 Sum_probs=90.7
Q ss_pred EeCCCCCCCCCcceeEEEEeCCEEEEEece-eCCC-------------CCCCCCeeEEEeCCCCC----eEeCCCCCCCC
Q 016201 158 VDRFDMPKDMAHSHLGVVSDGRYIYIVSGQ-YGPQ-------------CRGPTSRTFVLDSETRK----WDSIPPLPSPR 219 (393)
Q Consensus 158 ~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~-~~~~-------------~~~~~~~v~~yd~~~~~----W~~~~~~p~~r 219 (393)
+.+.+.|..-.-.+-++..+++.||. ||+ .... ...--+.++.||.++++ |.+--.- ++
T Consensus 26 elvG~~P~SGGDTYNAV~~vDd~IyF-GGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~--~~ 102 (339)
T PF09910_consen 26 ELVGPPPTSGGDTYNAVEWVDDFIYF-GGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHD--KT 102 (339)
T ss_pred eeccCCCCCCCccceeeeeecceEEE-eeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCC--cc
Confidence 35555665433455677778887775 444 2110 01124679999999887 6543222 22
Q ss_pred CCceEE------EECCEEEEEccCCCCCCCCCcceeEeeeeccccccCCeEEeccCCCCCCceeEEEECCEEEEEcCCCC
Q 016201 220 YSPATQ------LWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEG 293 (393)
Q Consensus 220 ~~~~~~------~~~~~iyv~GG~~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~ 293 (393)
....=+ .++++|++.=+- + -. ++-+|..+..+..=+.+...|... ++...+...|-+ .+.
T Consensus 103 ~WaGEVSdIlYdP~~D~LLlAR~D-G---h~-----nLGvy~ldr~~g~~~~L~~~ps~K---G~~~~D~a~F~i--~~~ 168 (339)
T PF09910_consen 103 KWAGEVSDILYDPYEDRLLLARAD-G---HA-----NLGVYSLDRRTGKAEKLSSNPSLK---GTLVHDYACFGI--NNF 168 (339)
T ss_pred ccccchhheeeCCCcCEEEEEecC-C---cc-----eeeeEEEcccCCceeeccCCCCcC---ceEeeeeEEEec--ccc
Confidence 222211 347788877321 1 11 233333344555555555444432 344445555533 221
Q ss_pred CCCCCCCCCccccccccceecCceEEeC-CCCCe--EECCC------CCCCCCCcceeEEEECCEEEEE--cCcCCCCCc
Q 016201 294 DFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKW--KVLPP------MPKPNSHIECAWVIVNNSIIIT--GGTTEKHPM 362 (393)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W--~~~~~------~~~~r~~~~~~~~~~~~~i~v~--GG~~~~~~~ 362 (393)
.. =...+.+|| .+.+| +.... -+.-+...+ .++...+++|.| ||.--.++.
T Consensus 169 ~~-----------------g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G-~~~s~ynR~faF~rGGi~vgnP~ 230 (339)
T PF09910_consen 169 HK-----------------GVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELG-AMASAYNRLFAFVRGGIFVGNPY 230 (339)
T ss_pred cc-----------------CCceEEEEEccCCeEEEEecccccCCCCCceEeeccc-cEEEEeeeEEEEEeccEEEeCCC
Confidence 11 034589999 77899 33221 111111222 346677777666 555444554
Q ss_pred ccceEEEEEEEeec
Q 016201 363 TKRMILVGEVFQFH 376 (393)
Q Consensus 363 ~~~~~~~~~~y~~~ 376 (393)
.+.-...+..+|.-
T Consensus 231 ~~e~~~f~RlfDf~ 244 (339)
T PF09910_consen 231 NGEEFRFYRLFDFP 244 (339)
T ss_pred CCCceeEEEeeecc
Confidence 33333345555554
No 120
>PLN00181 protein SPA1-RELATED; Provisional
Probab=70.59 E-value=1.5e+02 Score=31.47 Aligned_cols=99 Identities=8% Similarity=0.063 Sum_probs=47.1
Q ss_pred CEEEEEecCCCCCCccceEEEEECCCCceEeCCCCCCCCCcceeEEEE--eCCEEEEEeceeCCCCCCCCCeeEEEeCCC
Q 016201 129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS--DGRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (393)
Q Consensus 129 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 206 (393)
+..++.|+.+ ..+..||..+.+-. ..+..- ...-.+++. .++.+++.|+.+ ..+..||..+
T Consensus 545 ~~~las~~~D------g~v~lWd~~~~~~~--~~~~~H-~~~V~~l~~~p~~~~~L~Sgs~D--------g~v~iWd~~~ 607 (793)
T PLN00181 545 KSQVASSNFE------GVVQVWDVARSQLV--TEMKEH-EKRVWSIDYSSADPTLLASGSDD--------GSVKLWSINQ 607 (793)
T ss_pred CCEEEEEeCC------CeEEEEECCCCeEE--EEecCC-CCCEEEEEEcCCCCCEEEEEcCC--------CEEEEEECCC
Confidence 4455666654 34777888765432 222110 011223333 256777887643 3377788765
Q ss_pred CCeEeCCCCCCCCCCceEEE--ECCEEEEEccCCCCCCCCCcceeEe
Q 016201 207 RKWDSIPPLPSPRYSPATQL--WRGRLHVMGGSKENRHTPGLEHWSI 251 (393)
Q Consensus 207 ~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~ 251 (393)
..-. ..+.......++.. -++.+++.|+.+ ..+..|++
T Consensus 608 ~~~~--~~~~~~~~v~~v~~~~~~g~~latgs~d-----g~I~iwD~ 647 (793)
T PLN00181 608 GVSI--GTIKTKANICCVQFPSESGRSLAFGSAD-----HKVYYYDL 647 (793)
T ss_pred CcEE--EEEecCCCeEEEEEeCCCCCEEEEEeCC-----CeEEEEEC
Confidence 4321 11111111111111 146677777653 35666664
No 121
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=70.55 E-value=98 Score=29.28 Aligned_cols=135 Identities=16% Similarity=0.137 Sum_probs=71.0
Q ss_pred EEEECCEEEEEecCCCCCCccceEEEEECCCCc--eEeCCCCCCCCCcceeEEEEeCCEEEEEeceeCCCCCCCCCeeEE
Q 016201 124 AIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFV 201 (393)
Q Consensus 124 ~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~ 201 (393)
.+..++++|+.. .+ ..+..+|+++.+ |+....... ..........+++||+-.. ...+++
T Consensus 64 ~~~~dg~v~~~~-~~------G~i~A~d~~~g~~~W~~~~~~~~--~~~~~~~~~~~G~i~~g~~---------~g~~y~ 125 (370)
T COG1520 64 PADGDGTVYVGT-RD------GNIFALNPDTGLVKWSYPLLGAV--AQLSGPILGSDGKIYVGSW---------DGKLYA 125 (370)
T ss_pred cEeeCCeEEEec-CC------CcEEEEeCCCCcEEecccCcCcc--eeccCceEEeCCeEEEecc---------cceEEE
Confidence 366789999961 11 258889998876 875332100 0112222333788777643 226899
Q ss_pred EeCCC--CCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceeEeeeeccccccCCeEEeccC--CCCCCcee
Q 016201 202 LDSET--RKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPI--PRGGPHRA 277 (393)
Q Consensus 202 yd~~~--~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~--p~~~~~~~ 277 (393)
||..+ ..|+.-.+.. ++..-..++.++.+|+... ...+.+.+ -+..+..|+.-.+. +.... .+
T Consensus 126 ld~~~G~~~W~~~~~~~-~~~~~~~v~~~~~v~~~s~------~g~~~al~-----~~tG~~~W~~~~~~~~~~~~~-~~ 192 (370)
T COG1520 126 LDASTGTLVWSRNVGGS-PYYASPPVVGDGTVYVGTD------DGHLYALN-----ADTGTLKWTYETPAPLSLSIY-GS 192 (370)
T ss_pred EECCCCcEEEEEecCCC-eEEecCcEEcCcEEEEecC------CCeEEEEE-----ccCCcEEEEEecCCccccccc-cC
Confidence 99854 4487654432 3444445566667776631 12222222 22355678754332 22222 22
Q ss_pred EEEECCEEEEEc
Q 016201 278 CFVFNDRLFVVG 289 (393)
Q Consensus 278 ~~~~~~~iyv~G 289 (393)
....++.+|+..
T Consensus 193 ~~~~~~~vy~~~ 204 (370)
T COG1520 193 PAIASGTVYVGS 204 (370)
T ss_pred ceeecceEEEec
Confidence 335567777663
No 122
>PRK05137 tolB translocation protein TolB; Provisional
Probab=70.42 E-value=1.1e+02 Score=29.76 Aligned_cols=66 Identities=14% Similarity=0.081 Sum_probs=34.8
Q ss_pred cceEEEEECCCCceEeCCCCCCCCCcceeEEEEeCCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCCCCC
Q 016201 144 HSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPS 217 (393)
Q Consensus 144 ~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 217 (393)
...+++.|.....=+.+..-..+ -......-.+.+|+.+. ... ....++.+|+.+.+.+.+...+.
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~~--v~~p~wSpDG~~lay~s-~~~-----g~~~i~~~dl~~g~~~~l~~~~g 246 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSSL--VLTPRFSPNRQEITYMS-YAN-----GRPRVYLLDLETGQRELVGNFPG 246 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCCC--eEeeEECCCCCEEEEEE-ecC-----CCCEEEEEECCCCcEEEeecCCC
Confidence 46788988865543333322211 11222222233444432 211 13679999999988877765543
No 123
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=70.25 E-value=71 Score=27.53 Aligned_cols=64 Identities=14% Similarity=0.153 Sum_probs=32.0
Q ss_pred CCEEEEEecCCCCCCccceEEEEECCCCceEeCCCCCCCCCcceeEEEEe-CCEEEEEeceeCCCCCCCCCeeEEEeCCC
Q 016201 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (393)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 206 (393)
+++.+++++.+ ..+.+||..+.+-.. .+... ...-.++... ++++++.++. ...+..||+.+
T Consensus 62 ~~~~l~~~~~~------~~i~i~~~~~~~~~~--~~~~~-~~~i~~~~~~~~~~~~~~~~~--------~~~i~~~~~~~ 124 (289)
T cd00200 62 DGTYLASGSSD------KTIRLWDLETGECVR--TLTGH-TSYVSSVAFSPDGRILSSSSR--------DKTIKVWDVET 124 (289)
T ss_pred CCCEEEEEcCC------CeEEEEEcCcccceE--EEecc-CCcEEEEEEcCCCCEEEEecC--------CCeEEEEECCC
Confidence 34466666653 457888887753221 11111 0112223333 3466666542 34578888875
Q ss_pred CC
Q 016201 207 RK 208 (393)
Q Consensus 207 ~~ 208 (393)
.+
T Consensus 125 ~~ 126 (289)
T cd00200 125 GK 126 (289)
T ss_pred cE
Confidence 43
No 124
>PTZ00421 coronin; Provisional
Probab=69.92 E-value=1.2e+02 Score=30.14 Aligned_cols=102 Identities=11% Similarity=-0.041 Sum_probs=47.9
Q ss_pred CCEEEEEecCCCCCCccceEEEEECCCCceE-----eCCCCCCCCCcceeEEEEe--CCEEEEEeceeCCCCCCCCCeeE
Q 016201 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWV-----DRFDMPKDMAHSHLGVVSD--GRYIYIVSGQYGPQCRGPTSRTF 200 (393)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~-----~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~ 200 (393)
++.+++.|+.++ .+.+||..++... .+..+..- ...-.+++.. ++.+++.||.+ ..+.
T Consensus 87 d~~~LaSgS~Dg------tIkIWdi~~~~~~~~~~~~l~~L~gH-~~~V~~l~f~P~~~~iLaSgs~D--------gtVr 151 (493)
T PTZ00421 87 DPQKLFTASEDG------TIMGWGIPEEGLTQNISDPIVHLQGH-TKKVGIVSFHPSAMNVLASAGAD--------MVVN 151 (493)
T ss_pred CCCEEEEEeCCC------EEEEEecCCCccccccCcceEEecCC-CCcEEEEEeCcCCCCEEEEEeCC--------CEEE
Confidence 456777777653 4667777654321 11111110 0111122222 34577777643 3477
Q ss_pred EEeCCCCCeE-eCCCCCCCCCCceEE-EECCEEEEEccCCCCCCCCCcceeEe
Q 016201 201 VLDSETRKWD-SIPPLPSPRYSPATQ-LWRGRLHVMGGSKENRHTPGLEHWSI 251 (393)
Q Consensus 201 ~yd~~~~~W~-~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~ 251 (393)
+||..+.+-. .+..... .-.++. .-++.+++.|+.+ ..+..||+
T Consensus 152 IWDl~tg~~~~~l~~h~~--~V~sla~spdG~lLatgs~D-----g~IrIwD~ 197 (493)
T PTZ00421 152 VWDVERGKAVEVIKCHSD--QITSLEWNLDGSLLCTTSKD-----KKLNIIDP 197 (493)
T ss_pred EEECCCCeEEEEEcCCCC--ceEEEEEECCCCEEEEecCC-----CEEEEEEC
Confidence 8888775422 1111111 111222 2266777777653 45666764
No 125
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=68.51 E-value=1.1e+02 Score=29.18 Aligned_cols=147 Identities=13% Similarity=0.073 Sum_probs=67.4
Q ss_pred CCeeEEEeCCCCCeEeCCCCCCCCCCceEEEECC-EEEEEccCCCCCCCCCcceeEeeeeccccccCCeEEeccCCCCCC
Q 016201 196 TSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRG-RLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGP 274 (393)
Q Consensus 196 ~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~p~~~~ 274 (393)
...++++|..+..-..+...+..... ....-++ .|++.....+ ...+..++ ..+...+.+...+....
T Consensus 213 ~~~i~v~d~~~g~~~~~~~~~~~~~~-~~~spDg~~l~~~~~~~~---~~~i~~~d-------~~~~~~~~l~~~~~~~~ 281 (417)
T TIGR02800 213 KPEIYVQDLATGQREKVASFPGMNGA-PAFSPDGSKLAVSLSKDG---NPDIYVMD-------LDGKQLTRLTNGPGIDT 281 (417)
T ss_pred CcEEEEEECCCCCEEEeecCCCCccc-eEECCCCCEEEEEECCCC---CccEEEEE-------CCCCCEEECCCCCCCCC
Confidence 35799999988876666544322222 1222244 4655432221 12333333 34555555433222111
Q ss_pred ceeEEEECC-EEEEEcCCCCCCCCCCCCCccccccccceecCceEEeC-CCCCeEECCCCCCCCCCcceeEEEECCEEEE
Q 016201 275 HRACFVFND-RLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKVLPPMPKPNSHIECAWVIVNNSIII 352 (393)
Q Consensus 275 ~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~~~~~~~~r~~~~~~~~~~~~~i~v 352 (393)
. .....++ +|++.....+. ..+|.+| ....++.+..... ..... ....+++.++
T Consensus 282 ~-~~~s~dg~~l~~~s~~~g~--------------------~~iy~~d~~~~~~~~l~~~~~--~~~~~-~~spdg~~i~ 337 (417)
T TIGR02800 282 E-PSWSPDGKSIAFTSDRGGS--------------------PQIYMMDADGGEVRRLTFRGG--YNASP-SWSPDGDLIA 337 (417)
T ss_pred C-EEECCCCCEEEEEECCCCC--------------------ceEEEEECCCCCEEEeecCCC--CccCe-EECCCCCEEE
Confidence 1 1222344 45544332221 2488888 5556666542211 11111 2334666666
Q ss_pred EcCcCCCCCcccceEEEEEEEeecCCCccccc
Q 016201 353 TGGTTEKHPMTKRMILVGEVFQFHLDSLPSLQ 384 (393)
Q Consensus 353 ~GG~~~~~~~~~~~~~~~~~y~~~~~~W~~~~ 384 (393)
+....... ..+.++++++..++.+.
T Consensus 338 ~~~~~~~~-------~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 338 FVHREGGG-------FNIAVMDLDGGGERVLT 362 (417)
T ss_pred EEEccCCc-------eEEEEEeCCCCCeEEcc
Confidence 65432211 13467777776665554
No 126
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.54 E-value=51 Score=29.18 Aligned_cols=73 Identities=11% Similarity=0.254 Sum_probs=40.0
Q ss_pred ccccCccEEEECCEEEEEecCCCCCCccceEEEEECCCCceEe--CCCCCCCCCcceeEEEEeCCEEEEEeceeCCCCCC
Q 016201 117 VPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVD--RFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRG 194 (393)
Q Consensus 117 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~--~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 194 (393)
.|++..+.+.-+++++|. .-+.+.++|+. +.++|.+ ....+-...++.+-|.||
T Consensus 221 l~~s~iAS~SqDg~viIw--------------t~~~e~e~wk~tll~~f~~~--~w~vSWS~sGn~LaVs~G-------- 276 (299)
T KOG1332|consen 221 LPKSTIASCSQDGTVIIW--------------TKDEEYEPWKKTLLEEFPDV--VWRVSWSLSGNILAVSGG-------- 276 (299)
T ss_pred CCceeeEEecCCCcEEEE--------------EecCccCcccccccccCCcc--eEEEEEeccccEEEEecC--------
Confidence 455555555555655553 33455667865 3444443 333333344555555555
Q ss_pred CCCeeEEEeCCCC-CeEeCCC
Q 016201 195 PTSRTFVLDSETR-KWDSIPP 214 (393)
Q Consensus 195 ~~~~v~~yd~~~~-~W~~~~~ 214 (393)
.+.+.++-+..+ +|.++..
T Consensus 277 -dNkvtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 277 -DNKVTLWKENVDGKWEEVGE 296 (299)
T ss_pred -CcEEEEEEeCCCCcEEEccc
Confidence 455777766655 8998764
No 127
>PRK00178 tolB translocation protein TolB; Provisional
Probab=65.90 E-value=1.3e+02 Score=29.02 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=15.9
Q ss_pred CCeeEEEeCCCCCeEeCCCCC
Q 016201 196 TSRTFVLDSETRKWDSIPPLP 216 (393)
Q Consensus 196 ~~~v~~yd~~~~~W~~~~~~p 216 (393)
...++++|+.+.+-+.+...+
T Consensus 222 ~~~l~~~~l~~g~~~~l~~~~ 242 (430)
T PRK00178 222 RPRIFVQNLDTGRREQITNFE 242 (430)
T ss_pred CCEEEEEECCCCCEEEccCCC
Confidence 457999999988877776543
No 128
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=65.85 E-value=96 Score=29.53 Aligned_cols=101 Identities=8% Similarity=0.115 Sum_probs=52.3
Q ss_pred cCCeEEeccCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCceEEeCCCCCeEECCC-----CCC
Q 016201 260 EKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLDDEMKWKVLPP-----MPK 334 (393)
Q Consensus 260 ~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~W~~~~~-----~~~ 334 (393)
.+.|+.+..+.. + .--++..+|++|++.- .+ +++..+..-+=+++++ +..
T Consensus 189 ~~~Wt~l~~~~~-~-~~DIi~~kGkfYAvD~-~G----------------------~l~~i~~~l~i~~v~~~i~~~~~~ 243 (373)
T PLN03215 189 GNVLKALKQMGY-H-FSDIIVHKGQTYALDS-IG----------------------IVYWINSDLEFSRFGTSLDENITD 243 (373)
T ss_pred CCeeeEccCCCc-e-eeEEEEECCEEEEEcC-CC----------------------eEEEEecCCceeeecceecccccC
Confidence 478999864322 2 2367888999999932 11 2555552211122221 111
Q ss_pred CCCCcceeEEEECCEEEEEcCcCCCCC---------cccceEEEEEEEeecCCCcccccc
Q 016201 335 PNSHIECAWVIVNNSIIITGGTTEKHP---------MTKRMILVGEVFQFHLDSLPSLQS 385 (393)
Q Consensus 335 ~r~~~~~~~~~~~~~i~v~GG~~~~~~---------~~~~~~~~~~~y~~~~~~W~~~~~ 385 (393)
...+...-.|...|+|+++........ ...+....++..|.+..+|.++.+
T Consensus 244 g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~s 303 (373)
T PLN03215 244 GCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKT 303 (373)
T ss_pred CcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecc
Confidence 111112335778899999987532211 011232334444666778987754
No 129
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=65.03 E-value=1.2e+02 Score=28.07 Aligned_cols=94 Identities=9% Similarity=0.016 Sum_probs=41.8
Q ss_pred ceeeccCC-CCCeEEcCCCCccccCccEEEE-CC-EEEEEecCCCCCCccceEEEEECCCCc--eEeCCCCCCCCCccee
Q 016201 98 TFADLPAP-DLEWEQMPSAPVPRLDGAAIQI-KN-LFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFDMPKDMAHSHL 172 (393)
Q Consensus 98 ~~~~~~~~-~~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~r~~~ 172 (393)
.+..|+.. ..+++.+...+.+..-..++.. ++ .||+..-. ...+.+|++.++. .+.+..++.. ...+
T Consensus 58 ~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~------~~~v~v~~~~~~g~~~~~~~~~~~~--~~~~ 129 (330)
T PRK11028 58 RVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYN------ANCVSVSPLDKDGIPVAPIQIIEGL--EGCH 129 (330)
T ss_pred cEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcC------CCeEEEEEECCCCCCCCceeeccCC--Cccc
Confidence 55555554 3456544433322111222222 34 56665422 1456777775431 1122222221 1123
Q ss_pred EEEEe--CCEEEEEeceeCCCCCCCCCeeEEEeCCCC
Q 016201 173 GVVSD--GRYIYIVSGQYGPQCRGPTSRTFVLDSETR 207 (393)
Q Consensus 173 ~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 207 (393)
.++.. ++.+|+..- ..+.+..||..+.
T Consensus 130 ~~~~~p~g~~l~v~~~--------~~~~v~v~d~~~~ 158 (330)
T PRK11028 130 SANIDPDNRTLWVPCL--------KEDRIRLFTLSDD 158 (330)
T ss_pred EeEeCCCCCEEEEeeC--------CCCEEEEEEECCC
Confidence 33332 346666541 1466888988763
No 130
>PRK02889 tolB translocation protein TolB; Provisional
Probab=64.03 E-value=1.5e+02 Score=28.84 Aligned_cols=64 Identities=13% Similarity=0.114 Sum_probs=33.0
Q ss_pred ceEEEEECCCCceEeCCCCCCCCCcceeEEEEeCCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCCCC
Q 016201 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLP 216 (393)
Q Consensus 145 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p 216 (393)
..++..|.....-+.+...+.+ .......-.+.+|+... ... ....++.+|+.+.+=+.+...+
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~--v~~p~wSPDG~~la~~s-~~~-----~~~~I~~~dl~~g~~~~l~~~~ 239 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEP--IISPAWSPDGTKLAYVS-FES-----KKPVVYVHDLATGRRRVVANFK 239 (427)
T ss_pred cEEEEECCCCCCceEeccCCCC--cccceEcCCCCEEEEEE-ccC-----CCcEEEEEECCCCCEEEeecCC
Confidence 5688888866555554332221 11222222233444432 211 1356999999887655555433
No 131
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=63.87 E-value=1.3e+02 Score=28.19 Aligned_cols=146 Identities=20% Similarity=0.306 Sum_probs=68.6
Q ss_pred ccEEEE--CCEEEEEecCCCCCCccceEEEEECCCCc--eEeCCC--CCCCC-CcceeEEEEeCCEEEEEeceeCCCCCC
Q 016201 122 GAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNK--WVDRFD--MPKDM-AHSHLGVVSDGRYIYIVSGQYGPQCRG 194 (393)
Q Consensus 122 ~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~--~~~~~-~r~~~~~~~~~~~iyv~GG~~~~~~~~ 194 (393)
|++... ++.+||.-= -.+.+++|+...+. ...... ++... +| +....-.+..+|++.-
T Consensus 147 H~v~~~pdg~~v~v~dl------G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR-h~~f~pdg~~~Yv~~e-------- 211 (345)
T PF10282_consen 147 HQVVFSPDGRFVYVPDL------GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR-HLAFSPDGKYAYVVNE-------- 211 (345)
T ss_dssp EEEEE-TTSSEEEEEET------TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE-EEEE-TTSSEEEEEET--------
T ss_pred eeEEECCCCCEEEEEec------CCCEEEEEEEeCCCceEEEeeccccccCCCCc-EEEEcCCcCEEEEecC--------
Confidence 555444 346777531 13568888877665 544322 22211 12 3333334568999963
Q ss_pred CCCeeEEEeCC--CCCeEeCC---CCCCCC----CCceEEEE--CCEEEEEccCCCCCCCCCcceeEeeeeccccccCCe
Q 016201 195 PTSRTFVLDSE--TRKWDSIP---PLPSPR----YSPATQLW--RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAW 263 (393)
Q Consensus 195 ~~~~v~~yd~~--~~~W~~~~---~~p~~r----~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~d~~~~~~~W 263 (393)
..+.+..|+.. +..++.+. .+|... ....+++. +..||+.... .+.+-.|++ ++.+.+.
T Consensus 212 ~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~-----~~sI~vf~~-----d~~~g~l 281 (345)
T PF10282_consen 212 LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG-----SNSISVFDL-----DPATGTL 281 (345)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT-----TTEEEEEEE-----CTTTTTE
T ss_pred CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc-----CCEEEEEEE-----ecCCCce
Confidence 24555555544 66665543 343221 12222333 4467877422 345555554 3455666
Q ss_pred EEeccCCCCCCceeEEEE--CCEEEEEcCCC
Q 016201 264 RTEIPIPRGGPHRACFVF--NDRLFVVGGQE 292 (393)
Q Consensus 264 ~~~~~~p~~~~~~~~~~~--~~~iyv~GG~~ 292 (393)
+.+...+......-.+.+ +++.++++...
T Consensus 282 ~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~ 312 (345)
T PF10282_consen 282 TLVQTVPTGGKFPRHFAFSPDGRYLYVANQD 312 (345)
T ss_dssp EEEEEEEESSSSEEEEEE-TTSSEEEEEETT
T ss_pred EEEEEEeCCCCCccEEEEeCCCCEEEEEecC
Confidence 665554432222233333 55544444443
No 132
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=63.13 E-value=1.3e+02 Score=27.88 Aligned_cols=180 Identities=14% Similarity=0.082 Sum_probs=79.8
Q ss_pred EEEEECCCC-ceEeCCCCCC--CCCcceeEEEEeCCEEEEEece---eCCCCCCCCCeeEEEeCCCCCeEeCCCCCCCCC
Q 016201 147 VDVYNFTDN-KWVDRFDMPK--DMAHSHLGVVSDGRYIYIVSGQ---YGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRY 220 (393)
Q Consensus 147 ~~~yd~~~~-~W~~~~~~~~--~~~r~~~~~~~~~~~iyv~GG~---~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~ 220 (393)
+..+++++. .|+.++.... +..|.+=..+.-+|.+|+---. .+.....+.-.+|++||. ....++..-.....
T Consensus 87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~~~l~~~~~~~~ 165 (307)
T COG3386 87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGVVRLLDDDLTIP 165 (307)
T ss_pred cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CCEEEeecCcEEec
Confidence 445555433 2355443221 1236666666667777776432 111112345589999994 44444332111112
Q ss_pred CceEEEECC-EEEEEccCCCCCCCCCcceeEeeeecccccc-CCeEEeccCCCCCCceeEEEECCEEEEEcCCCCCCCCC
Q 016201 221 SPATQLWRG-RLHVMGGSKENRHTPGLEHWSIAVKDGKALE-KAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDFMAK 298 (393)
Q Consensus 221 ~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~~~~~d~~~~~-~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~ 298 (393)
..-+..-++ .+|+.= .....+.+|++...+..+.. ..+... .....+-.-.++--++.||+.....+.
T Consensus 166 NGla~SpDg~tly~aD-----T~~~~i~r~~~d~~~g~~~~~~~~~~~-~~~~G~PDG~~vDadG~lw~~a~~~g~---- 235 (307)
T COG3386 166 NGLAFSPDGKTLYVAD-----TPANRIHRYDLDPATGPIGGRRGFVDF-DEEPGLPDGMAVDADGNLWVAAVWGGG---- 235 (307)
T ss_pred CceEECCCCCEEEEEe-----CCCCeEEEEecCcccCccCCcceEEEc-cCCCCCCCceEEeCCCCEEEecccCCc----
Confidence 212222234 566551 11233333333211111111 111111 122233332455568899985554432
Q ss_pred CCCCccccccccceecCceEEeCCCCCeEECCCCCCCCCCcceeEEEEC---CEEEEEcCcC
Q 016201 299 PGSPIFKCSRRHEVVYGDVYMLDDEMKWKVLPPMPKPNSHIECAWVIVN---NSIIITGGTT 357 (393)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~v~~yd~~~~W~~~~~~~~~r~~~~~~~~~~~---~~i~v~GG~~ 357 (393)
.|.+|++..+-...-.+|.++.. + ++.-+ +.|||..-..
T Consensus 236 -----------------~v~~~~pdG~l~~~i~lP~~~~t--~-~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 236 -----------------RVVRFNPDGKLLGEIKLPVKRPT--N-PAFGGPDLNTLYITSARS 277 (307)
T ss_pred -----------------eEEEECCCCcEEEEEECCCCCCc--c-ceEeCCCcCEEEEEecCC
Confidence 28889866333333345543332 2 23333 6788885544
No 133
>PRK04043 tolB translocation protein TolB; Provisional
Probab=62.63 E-value=1.5e+02 Score=28.68 Aligned_cols=104 Identities=11% Similarity=0.059 Sum_probs=60.7
Q ss_pred ceeeccCCCCCeEEcCCCCccccCccEEEECC-EEEEEecCCCCCCccceEEEEECCCCceEeCCCCCCCCCcceeEEEE
Q 016201 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKN-LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS 176 (393)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~ 176 (393)
++|.+|..+.+=+.+...+..- ......-++ +|.+.-...+ ..+++.+|..+.+++++...+.. -......-
T Consensus 214 ~Iyv~dl~tg~~~~lt~~~g~~-~~~~~SPDG~~la~~~~~~g----~~~Iy~~dl~~g~~~~LT~~~~~--d~~p~~SP 286 (419)
T PRK04043 214 TLYKYNLYTGKKEKIASSQGML-VVSDVSKDGSKLLLTMAPKG----QPDIYLYDTNTKTLTQITNYPGI--DVNGNFVE 286 (419)
T ss_pred EEEEEECCCCcEEEEecCCCcE-EeeEECCCCCEEEEEEccCC----CcEEEEEECCCCcEEEcccCCCc--cCccEECC
Confidence 7888888776655555422111 111122244 5555443322 25799999999999988765431 11222223
Q ss_pred eCCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCC
Q 016201 177 DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP 214 (393)
Q Consensus 177 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 214 (393)
.+.+|+...... ...+++.+|..+.+.+++..
T Consensus 287 DG~~I~F~Sdr~------g~~~Iy~~dl~~g~~~rlt~ 318 (419)
T PRK04043 287 DDKRIVFVSDRL------GYPNIFMKKLNSGSVEQVVF 318 (419)
T ss_pred CCCEEEEEECCC------CCceEEEEECCCCCeEeCcc
Confidence 355677765321 14679999999988877653
No 134
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=62.41 E-value=1.7e+02 Score=29.05 Aligned_cols=94 Identities=16% Similarity=0.203 Sum_probs=47.7
Q ss_pred EEEeCCEEEEEeceeCCCCCCCCCeeEEEeCCCCC--eEeCCCCCC----C-CCCceEEEEC-CEEEEEccCCCCCCCCC
Q 016201 174 VVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK--WDSIPPLPS----P-RYSPATQLWR-GRLHVMGGSKENRHTPG 245 (393)
Q Consensus 174 ~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~p~----~-r~~~~~~~~~-~~iyv~GG~~~~~~~~~ 245 (393)
-++.++++|+... ...++++|..+.+ |+.-...+. + ......++.+ ++||+... ...
T Consensus 57 Pvv~~g~vy~~~~---------~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~------~g~ 121 (488)
T cd00216 57 PLVVDGDMYFTTS---------HSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF------DGR 121 (488)
T ss_pred CEEECCEEEEeCC---------CCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC------CCe
Confidence 3567999998753 2458889987654 876433221 1 1112234456 78886532 123
Q ss_pred cceeEeeeeccccccCCeEEeccCCC---CCCceeEEEECCEEEE
Q 016201 246 LEHWSIAVKDGKALEKAWRTEIPIPR---GGPHRACFVFNDRLFV 287 (393)
Q Consensus 246 ~~~~~~~~~d~~~~~~~W~~~~~~p~---~~~~~~~~~~~~~iyv 287 (393)
+.+++ .+.....|+.-...+. .....+.++.++.+|+
T Consensus 122 v~AlD-----~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v 161 (488)
T cd00216 122 LVALD-----AETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII 161 (488)
T ss_pred EEEEE-----CCCCCEeeeecCCCCcCcceEecCCCEEECCEEEE
Confidence 33333 2234556876433221 1112244555666665
No 135
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=62.38 E-value=98 Score=28.29 Aligned_cols=37 Identities=14% Similarity=0.072 Sum_probs=26.5
Q ss_pred HHHHhhhccEEEEecCCCCCCCCcccceeeeeecCCCceEEecCC
Q 016201 25 LLGAALIADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHV 69 (393)
Q Consensus 25 ~~~~~~~~~~ly~~GG~~~g~~~~~~~~~~~~d~~~~~W~~~~~~ 69 (393)
++..+..++.=-+.||. +| .+..||+.+..-..+..-
T Consensus 57 lL~c~F~d~~~~~~G~~-dg-------~vr~~Dln~~~~~~igth 93 (323)
T KOG1036|consen 57 LLDCAFADESTIVTGGL-DG-------QVRRYDLNTGNEDQIGTH 93 (323)
T ss_pred eeeeeccCCceEEEecc-Cc-------eEEEEEecCCcceeeccC
Confidence 34455566666777887 77 889999888877776653
No 136
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=60.91 E-value=2e+02 Score=29.35 Aligned_cols=174 Identities=14% Similarity=0.026 Sum_probs=83.3
Q ss_pred EecCCCCCCCCcccceeeeeecCCCceEEecCCCCCcccc----ccceeEEecCCcchhhHHhhcceeeccCCCCCeEEc
Q 016201 37 ASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDR----QRESVAVIDKKGQDAERFLSATFADLPAPDLEWEQM 112 (393)
Q Consensus 37 ~~GG~~~g~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~r----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 112 (393)
++||..+| .+.+||.++++-..+-.|......+ ..-++..+...-..+++..- .|...|+...+-.+
T Consensus 169 i~~Gs~Dg-------~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G-~V~FWd~~~gTLiq- 239 (691)
T KOG2048|consen 169 IAGGSIDG-------VIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAG-TVTFWDSIFGTLIQ- 239 (691)
T ss_pred EEecccCc-------eEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCc-eEEEEcccCcchhh-
Confidence 67777666 6788888877776654444331111 12345555444344443333 56666655433211
Q ss_pred CCCCccc-cCccEEEECC-EEEEEecCCCCCCccceEEEEECCC--CceEeCCCCCCCCCcceeEEEEeCCEEEEEecee
Q 016201 113 PSAPVPR-LDGAAIQIKN-LFYVFAGYGSLDYVHSHVDVYNFTD--NKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQY 188 (393)
Q Consensus 113 ~~~~~~r-~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~~--~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~ 188 (393)
+....- .-.++++-++ .-++.+|.++ .+..|...+ ++|.....-... ++.--+++++++ +.+.||.+
T Consensus 240 -S~~~h~adVl~Lav~~~~d~vfsaGvd~------~ii~~~~~~~~~~wv~~~~r~~h-~hdvrs~av~~~-~l~sgG~d 310 (691)
T KOG2048|consen 240 -SHSCHDADVLALAVADNEDRVFSAGVDP------KIIQYSLTTNKSEWVINSRRDLH-AHDVRSMAVIEN-ALISGGRD 310 (691)
T ss_pred -hhhhhhcceeEEEEcCCCCeEEEccCCC------ceEEEEecCCccceeeeccccCC-cccceeeeeecc-eEEeccee
Confidence 111111 1233444433 4555566653 355555444 468775443222 244556777777 66777765
Q ss_pred CCCCCCCCCeeEEEeCCCCCeEeCCCCCCCCCCceEEEECCEEEEEc
Q 016201 189 GPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMG 235 (393)
Q Consensus 189 ~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~G 235 (393)
..-. .....++.-.. .. .+.+.++..-..+.-.++++++-
T Consensus 311 ~~l~---i~~s~~~~~~~---h~-~~~~~p~~~~v~~a~~~~L~~~w 350 (691)
T KOG2048|consen 311 FTLA---ICSSREFKNMD---HR-QKNLFPASDRVSVAPENRLLVLW 350 (691)
T ss_pred eEEE---EccccccCchh---hh-ccccccccceeecCccceEEEEe
Confidence 4211 11111111111 11 12234444445555677888874
No 137
>PRK04043 tolB translocation protein TolB; Provisional
Probab=60.87 E-value=1.7e+02 Score=28.47 Aligned_cols=110 Identities=8% Similarity=0.023 Sum_probs=63.7
Q ss_pred cceeeccCCCCCeEEcCCCCccccCccEEEE-CCEEEEEecCCCCCCccceEEEEECCCCceEeCCCCCCCCCcceeEEE
Q 016201 97 ATFADLPAPDLEWEQMPSAPVPRLDGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVV 175 (393)
Q Consensus 97 ~~~~~~~~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~ 175 (393)
.++|.+|.....++++...+..-... ...- +.+|+..-...+ ..+++++|+.+.+.+++..-.. ......
T Consensus 257 ~~Iy~~dl~~g~~~~LT~~~~~d~~p-~~SPDG~~I~F~Sdr~g----~~~Iy~~dl~~g~~~rlt~~g~----~~~~~S 327 (419)
T PRK04043 257 PDIYLYDTNTKTLTQITNYPGIDVNG-NFVEDDKRIVFVSDRLG----YPNIFMKKLNSGSVEQVVFHGK----NNSSVS 327 (419)
T ss_pred cEEEEEECCCCcEEEcccCCCccCcc-EECCCCCEEEEEECCCC----CceEEEEECCCCCeEeCccCCC----cCceEC
Confidence 48999998888898887654311111 2222 346776654322 2579999999998877653221 122222
Q ss_pred EeCCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCCC
Q 016201 176 SDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPL 215 (393)
Q Consensus 176 ~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~ 215 (393)
-.++.|................+++.+|+++..++.+...
T Consensus 328 PDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~ 367 (419)
T PRK04043 328 TYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN 367 (419)
T ss_pred CCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC
Confidence 2344444443221111101136799999999999888763
No 138
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=59.32 E-value=30 Score=32.07 Aligned_cols=195 Identities=10% Similarity=0.076 Sum_probs=98.9
Q ss_pred chhhHHHHHHHHHhh----hccEEEEecCCCCCCCCcccceeeeeecCCCceEEecCCCCCccccccceeEEecCCcchh
Q 016201 16 GCWFLCVLGLLGAAL----IADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRESVAVIDKKGQDA 91 (393)
Q Consensus 16 ~~~~~~~~~~~~~~~----~~~~ly~~GG~~~g~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 91 (393)
-..|+..|.+|.-.| +++++.+.|.. +. ++-++|.++..-.. .+--. .-...++.+-.+.-..|
T Consensus 226 ~~~c~~~L~GHtGSVLCLqyd~rviisGSS-Ds-------TvrvWDv~tge~l~--tlihH--ceaVLhlrf~ng~mvtc 293 (499)
T KOG0281|consen 226 SLECLKILTGHTGSVLCLQYDERVIVSGSS-DS-------TVRVWDVNTGEPLN--TLIHH--CEAVLHLRFSNGYMVTC 293 (499)
T ss_pred cHHHHHhhhcCCCcEEeeeccceEEEecCC-Cc-------eEEEEeccCCchhh--HHhhh--cceeEEEEEeCCEEEEe
Confidence 345677788877655 47777666654 55 78888876554321 11000 01111222211211222
Q ss_pred hHHhhcceeeccCCCCCeEEcCCCC---ccccCccEEEECCEEEEEecCCCCCCccceEEEEECCCCceEeCCCCCCCCC
Q 016201 92 ERFLSATFADLPAPDLEWEQMPSAP---VPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMA 168 (393)
Q Consensus 92 ~~~~~~~~~~~~~~~~~W~~~~~~~---~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~ 168 (393)
..-.+-.||..+..+ ..+-+. ..|..-.++-+++|.+|-...+ ..+.+++..|.+.-+. +.. .
T Consensus 294 SkDrsiaVWdm~sps----~it~rrVLvGHrAaVNvVdfd~kyIVsASgD------RTikvW~~st~efvRt--l~g--H 359 (499)
T KOG0281|consen 294 SKDRSIAVWDMASPT----DITLRRVLVGHRAAVNVVDFDDKYIVSASGD------RTIKVWSTSTCEFVRT--LNG--H 359 (499)
T ss_pred cCCceeEEEeccCch----HHHHHHHHhhhhhheeeeccccceEEEecCC------ceEEEEeccceeeehh--hhc--c
Confidence 222222333332221 001111 1222233344577755533221 3466777777766543 322 2
Q ss_pred cceeEEEEeCCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcce
Q 016201 169 HSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEH 248 (393)
Q Consensus 169 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 248 (393)
+.+-++.-+++++.|.|.. -+.+-.||.+....-.+-. -.-..-.++.++++=+|.|+++ .++.+
T Consensus 360 kRGIAClQYr~rlvVSGSS--------DntIRlwdi~~G~cLRvLe--GHEeLvRciRFd~krIVSGaYD-----Gkikv 424 (499)
T KOG0281|consen 360 KRGIACLQYRDRLVVSGSS--------DNTIRLWDIECGACLRVLE--GHEELVRCIRFDNKRIVSGAYD-----GKIKV 424 (499)
T ss_pred cccceehhccCeEEEecCC--------CceEEEEeccccHHHHHHh--chHHhhhheeecCceeeecccc-----ceEEE
Confidence 4466777889999888742 4557778877665332211 0001123467789999999985 47788
Q ss_pred eEe
Q 016201 249 WSI 251 (393)
Q Consensus 249 ~~~ 251 (393)
|++
T Consensus 425 Wdl 427 (499)
T KOG0281|consen 425 WDL 427 (499)
T ss_pred Eec
Confidence 886
No 139
>PRK03629 tolB translocation protein TolB; Provisional
Probab=55.36 E-value=2.1e+02 Score=27.83 Aligned_cols=63 Identities=11% Similarity=0.192 Sum_probs=38.2
Q ss_pred ceEEEEECCCCceEeCCCCCCCCCcceeEEEEeCCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCCC
Q 016201 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPL 215 (393)
Q Consensus 145 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~ 215 (393)
..++.+|+.+.+-+.+...+.. .......-.+.+|++.....+ ..+++.+|..+.+.+++...
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~~--~~~~~~SPDG~~La~~~~~~g------~~~I~~~d~~tg~~~~lt~~ 285 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPRH--NGAPAFSPDGSKLAFALSKTG------SLNLYVMDLASGQIRQVTDG 285 (429)
T ss_pred cEEEEEECCCCCeEEccCCCCC--cCCeEECCCCCEEEEEEcCCC------CcEEEEEECCCCCEEEccCC
Confidence 5689999988877777655442 112222223445655532211 34699999998887777643
No 140
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=54.34 E-value=65 Score=28.85 Aligned_cols=116 Identities=9% Similarity=0.158 Sum_probs=55.1
Q ss_pred ccEEEEecCCCCCCCCcccceeeeeecCCCc-eEEecC---CCCCccccccceeEE----ecCCcchhhHHhhcceeecc
Q 016201 32 ADFMWASSSSSFSSSSAHLSVASNWALEKSG-VVVIPH---VNATKIDRQRESVAV----IDKKGQDAERFLSATFADLP 103 (393)
Q Consensus 32 ~~~ly~~GG~~~g~~~~~~~~~~~~d~~~~~-W~~~~~---~~~~~~~r~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 103 (393)
+..+++.-|+.+| .+..||..+++ -..+|. +..+.....+....+ ..+.|..+.....-..+.++
T Consensus 163 ~s~~lllaGyEsg-------hvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~ 235 (323)
T KOG0322|consen 163 GSTFLLLAGYESG-------HVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLN 235 (323)
T ss_pred cceEEEEEeccCC-------eEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeec
Confidence 3467888888677 88999987752 112221 111111111111111 11113332222222345555
Q ss_pred CCCCCeEEcCCCCccccCccEEE--ECCEEEEEecCCCCCCccceEEEEECCCCceEeCCCCCC
Q 016201 104 APDLEWEQMPSAPVPRLDGAAIQ--IKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPK 165 (393)
Q Consensus 104 ~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~ 165 (393)
-.+..-.........+.+-+-+. .++||+...|++.. +.+|+ |+.+.++..
T Consensus 236 ~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~R------iRVys-----wrtl~pLAV 288 (323)
T KOG0322|consen 236 HSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHR------IRVYS-----WRTLNPLAV 288 (323)
T ss_pred cccCcccccceEEecCCCccceEEccCCcEEeecccCCc------EEEEE-----eccCCchhh
Confidence 44333211111112222333333 48999999999864 56674 777777654
No 141
>PRK02889 tolB translocation protein TolB; Provisional
Probab=54.17 E-value=2.1e+02 Score=27.67 Aligned_cols=61 Identities=11% Similarity=0.143 Sum_probs=35.3
Q ss_pred ceEEEEECCCCceEeCCCCCCCCCcceeEEEEeC-CEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCC
Q 016201 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDG-RYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPP 214 (393)
Q Consensus 145 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 214 (393)
..++.+|+.+.+=+.+...+.. ... ....-+ .+|++....++ ..+++.+|..+...+++..
T Consensus 220 ~~I~~~dl~~g~~~~l~~~~g~--~~~-~~~SPDG~~la~~~~~~g------~~~Iy~~d~~~~~~~~lt~ 281 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANFKGS--NSA-PAWSPDGRTLAVALSRDG------NSQIYTVNADGSGLRRLTQ 281 (427)
T ss_pred cEEEEEECCCCCEEEeecCCCC--ccc-eEECCCCCEEEEEEccCC------CceEEEEECCCCCcEECCC
Confidence 4699999988865555544421 112 222234 45554433221 4679999988777666654
No 142
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=52.55 E-value=3.1e+02 Score=29.06 Aligned_cols=33 Identities=12% Similarity=0.258 Sum_probs=21.1
Q ss_pred ccEEEECCEEEEEecCCCCCCccceEEEEECCCC--ceEeCC
Q 016201 122 GAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDN--KWVDRF 161 (393)
Q Consensus 122 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~ 161 (393)
.+-+++++.||+.... ..+..+|..|. .|+.-+
T Consensus 188 ~TPlvvgg~lYv~t~~-------~~V~ALDa~TGk~lW~~d~ 222 (764)
T TIGR03074 188 ATPLKVGDTLYLCTPH-------NKVIALDAATGKEKWKFDP 222 (764)
T ss_pred cCCEEECCEEEEECCC-------CeEEEEECCCCcEEEEEcC
Confidence 4457789999997442 34666776654 366543
No 143
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=50.38 E-value=98 Score=28.07 Aligned_cols=112 Identities=14% Similarity=0.197 Sum_probs=57.9
Q ss_pred CceEeCCCCCCCCCcceeEEEEeCCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCCCCCCCCCceEE-EECCEEEE
Q 016201 155 NKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQ-LWRGRLHV 233 (393)
Q Consensus 155 ~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv 233 (393)
+.|..+. +|...+...-+.+..+.+.+++|+. ..+..-|-.-++|++..... .|..+..+ .++.+=.+
T Consensus 32 ~p~~~ve-lp~~s~~l~ia~~~~g~~gwlVg~r---------gtiletdd~g~tw~qal~~~-gr~~f~sv~f~~~egw~ 100 (339)
T COG4447 32 NPWTDVE-LPTLSPTLDIAFTESGSHGWLVGGR---------GTILETDDGGITWAQALDFL-GRHAFHSVSFLGMEGWI 100 (339)
T ss_pred Ccceeee-ccccCcccceeEeecCcceEEEcCc---------ceEEEecCCcccchhhhchh-hhhheeeeeeecccccc
Confidence 3455442 3332234455666678899999974 22444466677898866422 24444433 33444444
Q ss_pred EccCCCCCCCCCcceeEeeeeccccccCCeEEec-cCCCCCCceeEEEECCE-EEEEcC
Q 016201 234 MGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEI-PIPRGGPHRACFVFNDR-LFVVGG 290 (393)
Q Consensus 234 ~GG~~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~-~~p~~~~~~~~~~~~~~-iyv~GG 290 (393)
.|= ++. .+.- +....+|.+++ +...+..-.+...++++ -+++|-
T Consensus 101 vGe-------~sq-ll~T-----~DgGqsWARi~~~e~~eg~~~sI~f~d~q~g~m~gd 146 (339)
T COG4447 101 VGE-------PSQ-LLHT-----TDGGQSWARIPLSEKLEGFPDSITFLDDQRGEMLGD 146 (339)
T ss_pred cCC-------cce-EEEe-----cCCCcchhhchhhcCCCCCcceeEEecchhhhhhcc
Confidence 431 111 1111 13677898875 33333444456566554 566654
No 144
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=49.98 E-value=45 Score=19.82 Aligned_cols=25 Identities=24% Similarity=0.493 Sum_probs=16.5
Q ss_pred EEEEeCCEEEEEeceeCCCCCCCCCeeEEEeCCC
Q 016201 173 GVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSET 206 (393)
Q Consensus 173 ~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 206 (393)
+.++.++.+|+.+. ...++++|+++
T Consensus 16 ~~~v~~g~vyv~~~---------dg~l~ald~~t 40 (40)
T PF13570_consen 16 SPAVAGGRVYVGTG---------DGNLYALDAAT 40 (40)
T ss_dssp --EECTSEEEEE-T---------TSEEEEEETT-
T ss_pred CCEEECCEEEEEcC---------CCEEEEEeCCC
Confidence 44677999998864 45688898864
No 145
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=48.84 E-value=2.2e+02 Score=26.32 Aligned_cols=108 Identities=15% Similarity=0.254 Sum_probs=56.6
Q ss_pred CCeeEEEeCCCCC-eEeCCCCCCCCCCceEE---EECCEEEEEccCCCCCCCCCcceeEeeeeccccccCCeEEeccCCC
Q 016201 196 TSRTFVLDSETRK-WDSIPPLPSPRYSPATQ---LWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPR 271 (393)
Q Consensus 196 ~~~v~~yd~~~~~-W~~~~~~p~~r~~~~~~---~~~~~iyv~GG~~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~p~ 271 (393)
..++++|.-...+ |+....+...-..-+.+ ...++|.-. +.+ ...++|.. +...+|....-+-+
T Consensus 31 ~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtc-s~d-----rnayVw~~------~~~~~WkptlvLlR 98 (361)
T KOG1523|consen 31 NHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTC-SHD-----RNAYVWTQ------PSGGTWKPTLVLLR 98 (361)
T ss_pred CceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEc-cCC-----CCcccccc------CCCCeeccceeEEE
Confidence 5689999888888 99887654332221221 223454433 332 33455554 47889987665443
Q ss_pred CCCceeEEE--ECCEEEEEcCCCCCCCCCCCCCccccccccceecCceEEeCCCCCeEECCCCCCC
Q 016201 272 GGPHRACFV--FNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLDDEMKWKVLPPMPKP 335 (393)
Q Consensus 272 ~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~W~~~~~~~~~ 335 (393)
-...+.++. -+...|.+|+... ...|..|..+|.|-.-..+..|
T Consensus 99 iNrAAt~V~WsP~enkFAVgSgar--------------------~isVcy~E~ENdWWVsKhikkP 144 (361)
T KOG1523|consen 99 INRAATCVKWSPKENKFAVGSGAR--------------------LISVCYYEQENDWWVSKHIKKP 144 (361)
T ss_pred eccceeeEeecCcCceEEeccCcc--------------------EEEEEEEecccceehhhhhCCc
Confidence 222222222 1444555554321 2348888766777443333333
No 146
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=46.04 E-value=2.2e+02 Score=25.45 Aligned_cols=52 Identities=15% Similarity=0.287 Sum_probs=30.9
Q ss_pred CCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCCCCCCCCCceEE---EECCEEEEEccCCC
Q 016201 178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQ---LWRGRLHVMGGSKE 239 (393)
Q Consensus 178 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~---~~~~~iyv~GG~~~ 239 (393)
+..+||.||.+ -.++.||-.|.. ++........+...+ .-++.+|..|..++
T Consensus 235 ~k~~fVaGged--------~~~~kfDy~Tge--Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDG 289 (334)
T KOG0278|consen 235 KKEFFVAGGED--------FKVYKFDYNTGE--EIGSYNKGHFGPVHCVRFSPDGELYASGSEDG 289 (334)
T ss_pred CCceEEecCcc--------eEEEEEeccCCc--eeeecccCCCCceEEEEECCCCceeeccCCCc
Confidence 55799999854 347788887764 333222222222222 22889999987653
No 147
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=44.52 E-value=1.7e+02 Score=23.85 Aligned_cols=86 Identities=16% Similarity=0.142 Sum_probs=49.6
Q ss_pred EEeCCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCCCCCCCC----CceEEEE-CCEEEEEccCCCCCCCCCccee
Q 016201 175 VSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRY----SPATQLW-RGRLHVMGGSKENRHTPGLEHW 249 (393)
Q Consensus 175 ~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~----~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~ 249 (393)
+.++|.+|=+.-...... ...+..||..+++.....++|.... ...+.++ +++|-++--. ......+.|
T Consensus 2 V~vnG~~hW~~~~~~~~~---~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~---~~~~~~~IW 75 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDE---KDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQC---DETSKIEIW 75 (164)
T ss_pred EEECCEEEeeEEecCCCC---ceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEec---cCCccEEEE
Confidence 456788877764333221 1268999999999944334453332 2223233 6677777321 112347888
Q ss_pred EeeeeccccccCCeEEecc
Q 016201 250 SIAVKDGKALEKAWRTEIP 268 (393)
Q Consensus 250 ~~~~~d~~~~~~~W~~~~~ 268 (393)
-+.-|++. ...|+++-.
T Consensus 76 vm~~~~~~--~~SWtK~~~ 92 (164)
T PF07734_consen 76 VMKKYGYG--KESWTKLFT 92 (164)
T ss_pred EEeeeccC--cceEEEEEE
Confidence 77654433 788999643
No 148
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=43.74 E-value=2.4e+02 Score=25.14 Aligned_cols=169 Identities=12% Similarity=0.041 Sum_probs=0.0
Q ss_pred cCCCCCeEEcCCCCccccCccEEEECCEEEEEecCCCCCCccceEEEEECCCCceEeCCCCCCCCCcce----------e
Q 016201 103 PAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSH----------L 172 (393)
Q Consensus 103 ~~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~----------~ 172 (393)
|.....|.+.-.+|.+-.+..-+++++.+|. .+...+.+.+||+++..=..-..+|...-... .
T Consensus 52 ~~~~~~~~~~~~lp~~~~gTg~VVynGs~yy------nk~~t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdi 125 (249)
T KOG3545|consen 52 DFKRGRKAEKYRLPYSWDGTGHVVYNGSLYY------NKAGTRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDI 125 (249)
T ss_pred HhhccCcceEEeCCCCccccceEEEcceEEe------eccCCcceEEEEeecceeeeeeeccccccCCCcccccCCCccc
Q ss_pred EEEEeCCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCCCCCCCCCce-EEEECCEEEEEccCCCCCCCCCcceeEe
Q 016201 173 GVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPA-TQLWRGRLHVMGGSKENRHTPGLEHWSI 251 (393)
Q Consensus 173 ~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 251 (393)
-.++..+-++++=-..+... ...+-+.||.+-.-++.=....++...+ +.++.+-+|++ .+....-.-
T Consensus 126 D~avDE~GLWviYat~~~~g---~iv~skLdp~tl~~e~tW~T~~~k~~~~~aF~iCGvLY~v--------~S~~~~~~~ 194 (249)
T KOG3545|consen 126 DLAVDENGLWVIYATPENAG---TIVLSKLDPETLEVERTWNTTLPKRSAGNAFMICGVLYVV--------HSYNCTHTQ 194 (249)
T ss_pred cceecccceeEEecccccCC---cEEeeccCHHHhheeeeeccccCCCCcCceEEEeeeeEEE--------eccccCCce
Q ss_pred eeeccccccCCeEEec-cCCCCCCceeEEEE---CCEEEEE
Q 016201 252 AVKDGKALEKAWRTEI-PIPRGGPHRACFVF---NDRLFVV 288 (393)
Q Consensus 252 ~~~d~~~~~~~W~~~~-~~p~~~~~~~~~~~---~~~iyv~ 288 (393)
..|.||..+++=+.+. |.+..-...+++-. +.++|+.
T Consensus 195 i~yaydt~~~~~~~~~ipf~N~y~~~~~idYNP~D~~LY~w 235 (249)
T KOG3545|consen 195 ISYAYDTTTGTQERIDLPFPNPYSYATMIDYNPRDRRLYAW 235 (249)
T ss_pred EEEEEEcCCCceecccccccchhhhhhccCCCcccceeeEe
No 149
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=41.73 E-value=2.8e+02 Score=25.56 Aligned_cols=43 Identities=2% Similarity=-0.042 Sum_probs=26.1
Q ss_pred ceEEEEECCCCceEeCCCCCCCCCcceeEEEEeCCEEEEEecee
Q 016201 145 SHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQY 188 (393)
Q Consensus 145 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~ 188 (393)
+++..+|+.+++=..++....|+ |..+-+-..+-.+.+.|.++
T Consensus 94 k~~k~wDL~S~Q~~~v~~Hd~pv-kt~~wv~~~~~~cl~TGSWD 136 (347)
T KOG0647|consen 94 KQAKLWDLASGQVSQVAAHDAPV-KTCHWVPGMNYQCLVTGSWD 136 (347)
T ss_pred CceEEEEccCCCeeeeeecccce-eEEEEecCCCcceeEecccc
Confidence 45788999999887776555553 43433333334456666543
No 150
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=41.23 E-value=2.4e+02 Score=28.42 Aligned_cols=76 Identities=9% Similarity=0.129 Sum_probs=43.5
Q ss_pred CccccCccEEEE--CCEEEEEecCCCCCCccceEEEEECCCCceEeCCCCCCCCCcceeEEEEeCCEEEEEeceeCCCCC
Q 016201 116 PVPRLDGAAIQI--KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCR 193 (393)
Q Consensus 116 ~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~ 193 (393)
..|+.+.-++.. .-.||+.|-. .+|+++|++..+|- .|+....+--.+.-+.--..++++||.+
T Consensus 131 RIP~~GRDm~y~~~scDly~~gsg-------~evYRlNLEqGrfL--~P~~~~~~~lN~v~in~~hgLla~Gt~~----- 196 (703)
T KOG2321|consen 131 RIPKFGRDMKYHKPSCDLYLVGSG-------SEVYRLNLEQGRFL--NPFETDSGELNVVSINEEHGLLACGTED----- 196 (703)
T ss_pred ecCcCCccccccCCCccEEEeecC-------cceEEEEccccccc--cccccccccceeeeecCccceEEecccC-----
Confidence 345444433332 3358877642 57999999999984 3444321111222222234588888743
Q ss_pred CCCCeeEEEeCCCCC
Q 016201 194 GPTSRTFVLDSETRK 208 (393)
Q Consensus 194 ~~~~~v~~yd~~~~~ 208 (393)
..|+.+||.+.+
T Consensus 197 ---g~VEfwDpR~ks 208 (703)
T KOG2321|consen 197 ---GVVEFWDPRDKS 208 (703)
T ss_pred ---ceEEEecchhhh
Confidence 448888887764
No 151
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.92 E-value=3e+02 Score=25.45 Aligned_cols=110 Identities=13% Similarity=0.130 Sum_probs=55.0
Q ss_pred cCCCCCeEEcCCCCccccCccEEEEC----CEEEEEecCCCCCCccceEEEEEC-CCCceEeCCC---CCCCCCc--cee
Q 016201 103 PAPDLEWEQMPSAPVPRLDGAAIQIK----NLFYVFAGYGSLDYVHSHVDVYNF-TDNKWVDRFD---MPKDMAH--SHL 172 (393)
Q Consensus 103 ~~~~~~W~~~~~~~~~r~~~~~~~~~----~~iyv~GG~~~~~~~~~~~~~yd~-~~~~W~~~~~---~~~~~~r--~~~ 172 (393)
+....+|.++..|...|+.-.-+.+. +-..+.-+.++ .+.-.|..|| +...|+.... ++.|..+ ..+
T Consensus 96 ~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG---~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~ 172 (361)
T KOG2445|consen 96 EAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADG---ILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPC 172 (361)
T ss_pred ccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCc---EEEEEecCCccccccchhhhhhhhccCCcccccCcc
Confidence 44456899998888777653332221 22333333332 1222222333 3467876543 3333222 222
Q ss_pred EEEEe-----CCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCCCC
Q 016201 173 GVVSD-----GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLP 216 (393)
Q Consensus 173 ~~~~~-----~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p 216 (393)
+++.- ...++++|-.. .........+|.|+-..++|.++..+|
T Consensus 173 ~CvsWn~sr~~~p~iAvgs~e-~a~~~~~~~Iye~~e~~rKw~kva~L~ 220 (361)
T KOG2445|consen 173 FCVSWNPSRMHEPLIAVGSDE-DAPHLNKVKIYEYNENGRKWLKVAELP 220 (361)
T ss_pred eEEeeccccccCceEEEEccc-CCccccceEEEEecCCcceeeeehhcC
Confidence 33332 34567776543 221122345667777788999987544
No 152
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=40.71 E-value=2.3e+02 Score=24.10 Aligned_cols=103 Identities=12% Similarity=0.121 Sum_probs=55.6
Q ss_pred ceeEEecCCcchhhHHhhcceeeccCCCCCeEEcCCCCcc-ccCcc-EEEE-CC-EEEEEecCCCCCCccceEEEEECCC
Q 016201 79 ESVAVIDKKGQDAERFLSATFADLPAPDLEWEQMPSAPVP-RLDGA-AIQI-KN-LFYVFAGYGSLDYVHSHVDVYNFTD 154 (393)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~-r~~~~-~~~~-~~-~iyv~GG~~~~~~~~~~~~~yd~~~ 154 (393)
..+|+ .+.|......--..+|.+|...+.|..+.--+.+ ....- +.-+ +. -++++|...+.-.--..+++|++.+
T Consensus 71 ~saci-egkg~~a~eEgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~t 149 (200)
T PF15525_consen 71 YSACI-EGKGPEAEEEGIGKIYIKNLNNNNWWSLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNT 149 (200)
T ss_pred eeEEE-EcCCCccccccceeEEEEecCCCceEEEEecCcccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccC
Confidence 34444 4445444333334899999999988766332221 22211 2223 33 3555564433322235799999999
Q ss_pred CceEeCCCCCCCCCcceeEEEEeCCEEEE
Q 016201 155 NKWVDRFDMPKDMAHSHLGVVSDGRYIYI 183 (393)
Q Consensus 155 ~~W~~~~~~~~~~~r~~~~~~~~~~~iyv 183 (393)
++=+.+.+...- ...-..+-..++.|-+
T Consensus 150 g~~~~ly~~~dk-kqQVis~e~~gd~L~L 177 (200)
T PF15525_consen 150 GNLTELYEWKDK-KQQVISAEKNGDNLNL 177 (200)
T ss_pred CceeEeeecccc-ceeEEEEEEeCCEEEE
Confidence 998888766442 2333344444554433
No 153
>PTZ00421 coronin; Provisional
Probab=40.37 E-value=3.9e+02 Score=26.65 Aligned_cols=23 Identities=4% Similarity=0.120 Sum_probs=17.0
Q ss_pred CCEEEEEecCCCCCCccceEEEEECCCCc
Q 016201 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNK 156 (393)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 156 (393)
++.+++.|+.+ ..+.+||+.+.+
T Consensus 179 dG~lLatgs~D------g~IrIwD~rsg~ 201 (493)
T PTZ00421 179 DGSLLCTTSKD------KKLNIIDPRDGT 201 (493)
T ss_pred CCCEEEEecCC------CEEEEEECCCCc
Confidence 67788888765 347889998765
No 154
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=39.31 E-value=3.5e+02 Score=25.85 Aligned_cols=181 Identities=13% Similarity=0.098 Sum_probs=82.4
Q ss_pred ceeeccCCCCCeEEcCCCCccccCcc-EEEE-CCEEEEEecCCCCCC-----ccceEEEEECCCCceE--eCCCCCCCCC
Q 016201 98 TFADLPAPDLEWEQMPSAPVPRLDGA-AIQI-KNLFYVFAGYGSLDY-----VHSHVDVYNFTDNKWV--DRFDMPKDMA 168 (393)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~~~~r~~~~-~~~~-~~~iyv~GG~~~~~~-----~~~~~~~yd~~~~~W~--~~~~~~~~~~ 168 (393)
.+..+|..+++.. .. ..++..+. ++-. +++.++....+.... .-..++++.+.+..-+ .+-.-+.+..
T Consensus 151 ~l~v~Dl~tg~~l--~d-~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~ 227 (414)
T PF02897_consen 151 TLRVFDLETGKFL--PD-GIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPF 227 (414)
T ss_dssp EEEEEETTTTEEE--EE-EEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTT
T ss_pred EEEEEECCCCcCc--CC-cccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCc
Confidence 5777787776322 11 11222233 3333 334544444443222 2467899998887644 2322222211
Q ss_pred cceeEEEEeCCEEEEEeceeCCCCCCCCCeeEEEeCCCC-----CeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCC
Q 016201 169 HSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR-----KWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHT 243 (393)
Q Consensus 169 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~-----~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~ 243 (393)
.........+++..++.-.... . .++++..|.... .|..+.+ +..-..+.+...++.+|+.....
T Consensus 228 ~~~~~~~s~d~~~l~i~~~~~~---~-~s~v~~~d~~~~~~~~~~~~~l~~-~~~~~~~~v~~~~~~~yi~Tn~~----- 297 (414)
T PF02897_consen 228 WFVSVSRSKDGRYLFISSSSGT---S-ESEVYLLDLDDGGSPDAKPKLLSP-REDGVEYYVDHHGDRLYILTNDD----- 297 (414)
T ss_dssp SEEEEEE-TTSSEEEEEEESSS---S-EEEEEEEECCCTTTSS-SEEEEEE-SSSS-EEEEEEETTEEEEEE-TT-----
T ss_pred EEEEEEecCcccEEEEEEEccc---c-CCeEEEEeccccCCCcCCcEEEeC-CCCceEEEEEccCCEEEEeeCCC-----
Confidence 1122222334443333221111 1 378999999875 7888764 22222334445689999986422
Q ss_pred CCcceeEeeeecccc-ccCCeEE-eccCCCCCCceeEEEECCEEEEEcCCCC
Q 016201 244 PGLEHWSIAVKDGKA-LEKAWRT-EIPIPRGGPHRACFVFNDRLFVVGGQEG 293 (393)
Q Consensus 244 ~~~~~~~~~~~d~~~-~~~~W~~-~~~~p~~~~~~~~~~~~~~iyv~GG~~~ 293 (393)
...+.+...+.+. ....|.. +.+-.....--.+...++.|++.-=.++
T Consensus 298 --a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~ 347 (414)
T PF02897_consen 298 --APNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENG 347 (414)
T ss_dssp ---TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETT
T ss_pred --CCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECC
Confidence 1112232222222 2224664 3333222222345566888888754443
No 155
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=38.87 E-value=3e+02 Score=24.89 Aligned_cols=83 Identities=18% Similarity=0.232 Sum_probs=44.1
Q ss_pred CCeeEEEeCCCCC--eEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceeEeeeeccccccCCeEEeccCCCCC
Q 016201 196 TSRTFVLDSETRK--WDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGG 273 (393)
Q Consensus 196 ~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~p~~~ 273 (393)
...+-+-|+++.. |+.+-. .|....+++++|. .|+|-+++. .+..+ .+....-|..+.--....
T Consensus 32 s~~~~avd~~sG~~~We~ilg---~RiE~sa~vvgdf-VV~GCy~g~-----lYfl~-----~~tGs~~w~f~~~~~vk~ 97 (354)
T KOG4649|consen 32 SGIVIAVDPQSGNLIWEAILG---VRIECSAIVVGDF-VVLGCYSGG-----LYFLC-----VKTGSQIWNFVILETVKV 97 (354)
T ss_pred CceEEEecCCCCcEEeehhhC---ceeeeeeEEECCE-EEEEEccCc-----EEEEE-----ecchhheeeeeehhhhcc
Confidence 4457777888765 876542 4666677788886 667765432 22211 123344565543222211
Q ss_pred CceeEEEECCEEEEEcCCCCC
Q 016201 274 PHRACFVFNDRLFVVGGQEGD 294 (393)
Q Consensus 274 ~~~~~~~~~~~iyv~GG~~~~ 294 (393)
. +.+..++.+.-+|.+++.
T Consensus 98 ~--a~~d~~~glIycgshd~~ 116 (354)
T KOG4649|consen 98 R--AQCDFDGGLIYCGSHDGN 116 (354)
T ss_pred c--eEEcCCCceEEEecCCCc
Confidence 1 344455555556666653
No 156
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=38.48 E-value=3.2e+02 Score=25.13 Aligned_cols=92 Identities=10% Similarity=-0.006 Sum_probs=48.5
Q ss_pred EEECCEEEEEecCCCCCCccceEEEEECCCCceEeCCCCCCCCCcceeEEEEeCCEEEEEeceeCCCCCCCCCeeEEEeC
Q 016201 125 IQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDS 204 (393)
Q Consensus 125 ~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~ 204 (393)
+..+..-.+.||.++ .+.+||+.+..=..+...-.+. |.- .-. ......|.||++. .+..+|+
T Consensus 61 ~F~d~~~~~~G~~dg------~vr~~Dln~~~~~~igth~~~i-~ci-~~~-~~~~~vIsgsWD~--------~ik~wD~ 123 (323)
T KOG1036|consen 61 AFADESTIVTGGLDG------QVRRYDLNTGNEDQIGTHDEGI-RCI-EYS-YEVGCVISGSWDK--------TIKFWDP 123 (323)
T ss_pred eccCCceEEEeccCc------eEEEEEecCCcceeeccCCCce-EEE-Eee-ccCCeEEEcccCc--------cEEEEec
Confidence 334555666788764 5888999998866665544432 211 111 2334667777653 3666777
Q ss_pred CCCCeEeCCCCCCCCCCceEEEECCEEEEEcc
Q 016201 205 ETRKWDSIPPLPSPRYSPATQLWRGRLHVMGG 236 (393)
Q Consensus 205 ~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG 236 (393)
.... .+.....+..-+++-+.+++|. +|+
T Consensus 124 R~~~--~~~~~d~~kkVy~~~v~g~~Lv-Vg~ 152 (323)
T KOG1036|consen 124 RNKV--VVGTFDQGKKVYCMDVSGNRLV-VGT 152 (323)
T ss_pred cccc--cccccccCceEEEEeccCCEEE-Eee
Confidence 6521 1112222223445555555544 444
No 157
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=38.41 E-value=1.4e+02 Score=26.51 Aligned_cols=127 Identities=8% Similarity=0.084 Sum_probs=61.7
Q ss_pred eccCCCCCeEEcCCCC-cccc-CccEEEE-CCEEEEEecCCCCCCccceEEEEECC-CCceEeCCCCCCCCCcceeEEEE
Q 016201 101 DLPAPDLEWEQMPSAP-VPRL-DGAAIQI-KNLFYVFAGYGSLDYVHSHVDVYNFT-DNKWVDRFDMPKDMAHSHLGVVS 176 (393)
Q Consensus 101 ~~~~~~~~W~~~~~~~-~~r~-~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~-~~~W~~~~~~~~~~~r~~~~~~~ 176 (393)
.-+-...+|+.....+ .... ..+++.. ++.|+++-... ... .....+... ..+|+...+...|.......+..
T Consensus 139 ~S~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~-~~~--~~~~~~S~D~G~TWs~~~~~~~~~~~~~~~~~~ 215 (275)
T PF13088_consen 139 YSDDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTE-GND--DIYISRSTDGGRTWSPPQPTNLPNPNSSISLVR 215 (275)
T ss_dssp EESSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEEC-SST--EEEEEEESSTTSS-EEEEEEECSSCCEEEEEEE
T ss_pred EeCCCCceeeccccccccCCcceeEEEECCCCcEEEEEEcc-CCC--cEEEEEECCCCCcCCCceecccCcccCCceEEE
Confidence 3344556898877663 2222 3333333 57888886653 211 223344443 56899865332222233434333
Q ss_pred -eCCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCCCCCC---CCCc-eEEEE-CCEEEE
Q 016201 177 -DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSP---RYSP-ATQLW-RGRLHV 233 (393)
Q Consensus 177 -~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~---r~~~-~~~~~-~~~iyv 233 (393)
-++.++++... .... ..-.+..-.-...+|+....+... ...+ .++.. +++|||
T Consensus 216 ~~~g~~~~~~~~-~~~r--~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 216 LSDGRLLLVYNN-PDGR--SNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp CTTSEEEEEEEC-SSTS--EEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEEEEEETTEEEE
T ss_pred cCCCCEEEEEEC-CCCC--CceEEEEEeCCCCcCCccEEEeCCCCCcEECCeeEEeCCCcCCC
Confidence 36788888762 1111 112222223336789876543322 2333 33444 568886
No 158
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=38.25 E-value=4.1e+02 Score=26.31 Aligned_cols=28 Identities=14% Similarity=-0.073 Sum_probs=16.9
Q ss_pred eEeCCCCCCCCCCceEEEECCEEEEEccCC
Q 016201 209 WDSIPPLPSPRYSPATQLWRGRLHVMGGSK 238 (393)
Q Consensus 209 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 238 (393)
|.+....| ..+-+....+..|++.=|++
T Consensus 203 ~~~~HsAP--~~gicfspsne~l~vsVG~D 230 (673)
T KOG4378|consen 203 ASEAHSAP--CRGICFSPSNEALLVSVGYD 230 (673)
T ss_pred hhhhccCC--cCcceecCCccceEEEeccc
Confidence 55555444 34445556677888877764
No 159
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=38.22 E-value=4.9e+02 Score=27.25 Aligned_cols=123 Identities=14% Similarity=0.228 Sum_probs=59.6
Q ss_pred CeeEEEeCCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceeEeeeeccccccCCeEEeccCCCCCCce
Q 016201 197 SRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHR 276 (393)
Q Consensus 197 ~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~p~~~~~~ 276 (393)
..+.+|+-++++......--.+|.......-++.+++.|+.+ .++.+|+.. ...-..--..+......
T Consensus 330 gQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eD-----gKVKvWn~~-------SgfC~vTFteHts~Vt~ 397 (893)
T KOG0291|consen 330 GQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAED-----GKVKVWNTQ-------SGFCFVTFTEHTSGVTA 397 (893)
T ss_pred ceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCC-----CcEEEEecc-------CceEEEEeccCCCceEE
Confidence 345555554444433333223333333334477888888764 577888741 11111101122222222
Q ss_pred eEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCceEEeC-CC-CCeEECCCCCCCCCCcceeEEEEC--CEEEE
Q 016201 277 ACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DE-MKWKVLPPMPKPNSHIECAWVIVN--NSIII 352 (393)
Q Consensus 277 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~-~~W~~~~~~~~~r~~~~~~~~~~~--~~i~v 352 (393)
-.+...++..+....+|. |-.+| .. ...+... -|.|+. ++++.+| |.|++
T Consensus 398 v~f~~~g~~llssSLDGt----------------------VRAwDlkRYrNfRTft-~P~p~Q---fscvavD~sGelV~ 451 (893)
T KOG0291|consen 398 VQFTARGNVLLSSSLDGT----------------------VRAWDLKRYRNFRTFT-SPEPIQ---FSCVAVDPSGELVC 451 (893)
T ss_pred EEEEecCCEEEEeecCCe----------------------EEeeeecccceeeeec-CCCcee---eeEEEEcCCCCEEE
Confidence 223346667666655543 55555 22 2444432 344433 3335555 88988
Q ss_pred EcCcC
Q 016201 353 TGGTT 357 (393)
Q Consensus 353 ~GG~~ 357 (393)
.|+.+
T Consensus 452 AG~~d 456 (893)
T KOG0291|consen 452 AGAQD 456 (893)
T ss_pred eeccc
Confidence 88864
No 160
>PRK01742 tolB translocation protein TolB; Provisional
Probab=38.10 E-value=3.8e+02 Score=25.92 Aligned_cols=100 Identities=7% Similarity=-0.036 Sum_probs=48.2
Q ss_pred ceeeccCCCCCeEEcCCCCccccCccEEEECCE-EEEEecCCCCCCccceEEEEECCCCceEeCCCCCCCCCcceeEEEE
Q 016201 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNL-FYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS 176 (393)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~~~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~ 176 (393)
.++.+|..+.+-+.+...+..- ......-+++ |++....++. .+++.+|+.+.+.+++...... .... ...
T Consensus 229 ~i~i~dl~tg~~~~l~~~~g~~-~~~~wSPDG~~La~~~~~~g~----~~Iy~~d~~~~~~~~lt~~~~~--~~~~-~wS 300 (429)
T PRK01742 229 QLVVHDLRSGARKVVASFRGHN-GAPAFSPDGSRLAFASSKDGV----LNIYVMGANGGTPSQLTSGAGN--NTEP-SWS 300 (429)
T ss_pred EEEEEeCCCCceEEEecCCCcc-CceeECCCCCEEEEEEecCCc----EEEEEEECCCCCeEeeccCCCC--cCCE-EEC
Confidence 5777777665544554433211 1112222554 4443333322 3588899988887776543221 1122 222
Q ss_pred eCC-EEEEEeceeCCCCCCCCCeeEEEeCCCCCeEe
Q 016201 177 DGR-YIYIVSGQYGPQCRGPTSRTFVLDSETRKWDS 211 (393)
Q Consensus 177 ~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~ 211 (393)
-++ +|+......+ ..+++.++..+..-+.
T Consensus 301 pDG~~i~f~s~~~g------~~~I~~~~~~~~~~~~ 330 (429)
T PRK01742 301 PDGQSILFTSDRSG------SPQVYRMSASGGGASL 330 (429)
T ss_pred CCCCEEEEEECCCC------CceEEEEECCCCCeEE
Confidence 344 4554432211 3467777776554333
No 161
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=37.85 E-value=3.3e+02 Score=25.09 Aligned_cols=18 Identities=6% Similarity=0.121 Sum_probs=13.6
Q ss_pred CeeEEEeCCCCCeEeCCC
Q 016201 197 SRTFVLDSETRKWDSIPP 214 (393)
Q Consensus 197 ~~v~~yd~~~~~W~~~~~ 214 (393)
..+..||+++++=.+++-
T Consensus 94 k~~k~wDL~S~Q~~~v~~ 111 (347)
T KOG0647|consen 94 KQAKLWDLASGQVSQVAA 111 (347)
T ss_pred CceEEEEccCCCeeeeee
Confidence 457789999998777663
No 162
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=37.52 E-value=1.8e+02 Score=29.18 Aligned_cols=58 Identities=17% Similarity=0.182 Sum_probs=32.7
Q ss_pred CEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceeE
Q 016201 179 RYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWS 250 (393)
Q Consensus 179 ~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 250 (393)
--||+.|- .++|+++|++...|-.-=....+-..+..+.-.+.|+.+||.+ ..++.||
T Consensus 146 cDly~~gs---------g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~-----g~VEfwD 203 (703)
T KOG2321|consen 146 CDLYLVGS---------GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTED-----GVVEFWD 203 (703)
T ss_pred ccEEEeec---------CcceEEEEccccccccccccccccceeeeecCccceEEecccC-----ceEEEec
Confidence 34677652 5779999999988743211111111222222235688888864 4566665
No 163
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=37.12 E-value=3.3e+02 Score=24.88 Aligned_cols=133 Identities=10% Similarity=0.035 Sum_probs=64.2
Q ss_pred hccEEEEecCCCCCCCCcccceeeeeecCCCceEEecCCCCCccccccc-eeEEecCCcchhhHHhhcceeeccCCCCCe
Q 016201 31 IADFMWASSSSSFSSSSAHLSVASNWALEKSGVVVIPHVNATKIDRQRE-SVAVIDKKGQDAERFLSATFADLPAPDLEW 109 (393)
Q Consensus 31 ~~~~ly~~GG~~~g~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W 109 (393)
-.++.|++|+. + ++..=|-..++|.+...... |+.+ .+.+++..+-.... .+ .++.-+-..++|
T Consensus 53 ~g~~gwlVg~r--g-------tiletdd~g~tw~qal~~~g----r~~f~sv~f~~~egw~vGe-~s-qll~T~DgGqsW 117 (339)
T COG4447 53 SGSHGWLVGGR--G-------TILETDDGGITWAQALDFLG----RHAFHSVSFLGMEGWIVGE-PS-QLLHTTDGGQSW 117 (339)
T ss_pred cCcceEEEcCc--c-------eEEEecCCcccchhhhchhh----hhheeeeeeecccccccCC-cc-eEEEecCCCcch
Confidence 36778888877 1 22333346677877554322 4443 44455543333221 12 566666677899
Q ss_pred EEcCCCCc-cccCccEEEECC-EEEEEecCCCCCCccceEEEEECCCCceEeCCCCCCCCCcceeEEEEeCCEEEEEe
Q 016201 110 EQMPSAPV-PRLDGAAIQIKN-LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVS 185 (393)
Q Consensus 110 ~~~~~~~~-~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~G 185 (393)
.+++.-.. +-.-.+...+++ .-|++|-.. .+..=+-..+.|+.+.+-..+.....-...+.+|...++|
T Consensus 118 ARi~~~e~~eg~~~sI~f~d~q~g~m~gd~G-------ail~T~DgGk~Wk~l~e~~v~~~~~n~ia~s~dng~vaVg 188 (339)
T COG4447 118 ARIPLSEKLEGFPDSITFLDDQRGEMLGDQG-------AILKTTDGGKNWKALVEKAVGLAVPNEIARSADNGYVAVG 188 (339)
T ss_pred hhchhhcCCCCCcceeEEecchhhhhhcccc-------eEEEecCCcccHhHhcccccchhhhhhhhhhccCCeEEEe
Confidence 88764221 112233344443 344444321 2333344567898775433321111222233455555565
No 164
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=35.64 E-value=2.6e+02 Score=24.79 Aligned_cols=85 Identities=13% Similarity=0.153 Sum_probs=51.3
Q ss_pred CCeeEEEeCCCCCeEeCCCCCCCCCCceEEEECC--EEEEEccCCCCCCCCCcceeEeeeeccccccCCeEEeccCCCCC
Q 016201 196 TSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRG--RLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGG 273 (393)
Q Consensus 196 ~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~p~~~ 273 (393)
-..++.+|..|.+=.+ ...-.-..--++.+|+ .+.+.|++ ..++.+||. .+...+++..+...+
T Consensus 80 Dk~v~vwDV~TGkv~R--r~rgH~aqVNtV~fNeesSVv~Sgsf-----D~s~r~wDC-------RS~s~ePiQildea~ 145 (307)
T KOG0316|consen 80 DKAVQVWDVNTGKVDR--RFRGHLAQVNTVRFNEESSVVASGSF-----DSSVRLWDC-------RSRSFEPIQILDEAK 145 (307)
T ss_pred CceEEEEEcccCeeee--ecccccceeeEEEecCcceEEEeccc-----cceeEEEEc-------ccCCCCccchhhhhc
Confidence 3558889988875211 1110111112334443 46666665 567888884 666666666666666
Q ss_pred CceeEEEECCEEEEEcCCCCC
Q 016201 274 PHRACFVFNDRLFVVGGQEGD 294 (393)
Q Consensus 274 ~~~~~~~~~~~iyv~GG~~~~ 294 (393)
-+.+.+.+.+...|.|..++.
T Consensus 146 D~V~Si~v~~heIvaGS~DGt 166 (307)
T KOG0316|consen 146 DGVSSIDVAEHEIVAGSVDGT 166 (307)
T ss_pred CceeEEEecccEEEeeccCCc
Confidence 666778888888888877654
No 165
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=35.52 E-value=4.5e+02 Score=25.94 Aligned_cols=135 Identities=12% Similarity=0.095 Sum_probs=68.7
Q ss_pred cceEEEEECCCCceEeCCCCCCCCCcceeEEEEeCCEEEEEeceeCCCCCCCCC-eeEEEeCCCCCeEeCCCCCCCCCCc
Q 016201 144 HSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTS-RTFVLDSETRKWDSIPPLPSPRYSP 222 (393)
Q Consensus 144 ~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~-~v~~yd~~~~~W~~~~~~p~~r~~~ 222 (393)
..+++.++.+..+=+++.-...+ -...+.-.-++.|.|.-- .. .|.. --+.|-...+. .+..+++.. -.
T Consensus 106 taDly~v~~e~Ge~kRiTyfGr~--fT~VaG~~~dg~iiV~TD--~~---tPF~q~~~lYkv~~dg-~~~e~LnlG--pa 175 (668)
T COG4946 106 TADLYVVPSEDGEAKRITYFGRR--FTRVAGWIPDGEIIVSTD--FH---TPFSQWTELYKVNVDG-IKTEPLNLG--PA 175 (668)
T ss_pred cccEEEEeCCCCcEEEEEEeccc--cceeeccCCCCCEEEEec--cC---CCcccceeeeEEccCC-ceeeeccCC--ce
Confidence 46788888888888777665332 222233334677777642 21 2222 12223222221 111233322 22
Q ss_pred eEEEECCEEEEEccC-------CCCCCCCCcceeEeeeeccccccCCeEEeccCCCCCCceeEEEECCEEEEEcCCCCCC
Q 016201 223 ATQLWRGRLHVMGGS-------KENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEGDF 295 (393)
Q Consensus 223 ~~~~~~~~iyv~GG~-------~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~ 295 (393)
+..+..+.+.|+|-- .+.........|.-. ....+++..-.|+.... +-+.++++||.+.-+.+-+
T Consensus 176 thiv~~dg~ivigRntydLP~WK~YkGGtrGklWis~-----d~g~tFeK~vdl~~~vS--~PmIV~~RvYFlsD~eG~G 248 (668)
T COG4946 176 THIVIKDGIIVIGRNTYDLPHWKGYKGGTRGKLWISS-----DGGKTFEKFVDLDGNVS--SPMIVGERVYFLSDHEGVG 248 (668)
T ss_pred eeEEEeCCEEEEccCcccCcccccccCCccceEEEEe-----cCCcceeeeeecCCCcC--CceEEcceEEEEecccCcc
Confidence 344555557777631 111122333444321 13336666667776655 5567799999998877653
No 166
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=34.90 E-value=1e+02 Score=28.82 Aligned_cols=70 Identities=24% Similarity=0.311 Sum_probs=37.8
Q ss_pred CCEEEEE---ecCCCCCCccceEEEEECCCCceEeCCCCCCCCCcceeEEEEe-CC--EEEEEeceeCCCCCCCCCeeEE
Q 016201 128 KNLFYVF---AGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD-GR--YIYIVSGQYGPQCRGPTSRTFV 201 (393)
Q Consensus 128 ~~~iyv~---GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~--~iyv~GG~~~~~~~~~~~~v~~ 201 (393)
.+.|||+ |+....+..-..+|+||+.+.+=-..-++..+ ..++.+- +. .+|.+-+ ....++.
T Consensus 249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~----~~Si~Vsqd~~P~L~~~~~--------~~~~l~v 316 (342)
T PF06433_consen 249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHP----IDSIAVSQDDKPLLYALSA--------GDGTLDV 316 (342)
T ss_dssp TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEE----ESEEEEESSSS-EEEEEET--------TTTEEEE
T ss_pred cCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCc----cceEEEccCCCcEEEEEcC--------CCCeEEE
Confidence 5789997 33333345568999999999873222222222 2233332 33 4665532 1356999
Q ss_pred EeCCCCCe
Q 016201 202 LDSETRKW 209 (393)
Q Consensus 202 yd~~~~~W 209 (393)
||..+.+-
T Consensus 317 ~D~~tGk~ 324 (342)
T PF06433_consen 317 YDAATGKL 324 (342)
T ss_dssp EETTT--E
T ss_pred EeCcCCcE
Confidence 99998753
No 167
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=34.11 E-value=3.8e+02 Score=24.79 Aligned_cols=185 Identities=14% Similarity=0.272 Sum_probs=84.5
Q ss_pred cEEEECCEEEEEecCC-C---CCCccceEEEEE-CCCCceEeCCC-C--CC---CCCcceeEEEEeCCEEEEEeceeCCC
Q 016201 123 AAIQIKNLFYVFAGYG-S---LDYVHSHVDVYN-FTDNKWVDRFD-M--PK---DMAHSHLGVVSDGRYIYIVSGQYGPQ 191 (393)
Q Consensus 123 ~~~~~~~~iyv~GG~~-~---~~~~~~~~~~yd-~~~~~W~~~~~-~--~~---~~~r~~~~~~~~~~~iyv~GG~~~~~ 191 (393)
+++.+++.|+++.... . .......+..|. ....+|+.... + .. -.......+++-+++||++=|.....
T Consensus 3 SLV~vgGvv~AvAEa~~~~~~~~~~~~ias~~~~~~g~tw~~~~~~~~~~~~~~~v~v~rPTtvvkgn~IymLvG~y~~~ 82 (310)
T PF13859_consen 3 SLVEVGGVVFAVAEAQCKKSNDSGFTDIASEYSTDNGETWKAEVAVLNDDGSKKRVDVSRPTTVVKGNKIYMLVGSYSRS 82 (310)
T ss_dssp EEEEETTEEEEEEEEESS-S-SSS-EEEEEEEESSSSSS-EEEEEE----SS-TT-EEEEEEEEEETTEEEEEEEEESS-
T ss_pred CEEEECCEEEEEEEEEEccCCCCCceeEEEeEeeccccccccceeeecccccccccccceeeeeecceeEEEEEEEEecc
Confidence 5677899999886531 1 122233344443 45668976431 1 11 11234566777899999997765432
Q ss_pred CCCCCCeeEEEe--CCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCC------C------CCCCCcc-eeEeeeecc
Q 016201 192 CRGPTSRTFVLD--SETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKE------N------RHTPGLE-HWSIAVKDG 256 (393)
Q Consensus 192 ~~~~~~~v~~yd--~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~------~------~~~~~~~-~~~~~~~d~ 256 (393)
.....-.+..+- -...+|....+++..-... .+.++-||-++ . ......+ .+.+.+|.-
T Consensus 83 ~~~~~~~llLvks~~~g~~W~~~~~l~~~~~~~------~~~figgGGSGV~m~dGTLVFPv~a~~~~~~~~~SlIiYS~ 156 (310)
T PF13859_consen 83 AGADDWGLLLVKSTDGGIKWGDTKSLPSTSFQS------WKQFIGGGGSGVVMEDGTLVFPVQATKKNGDGTVSLIIYST 156 (310)
T ss_dssp -SSTTEEEEEEEEESSSSEE---EE-GGGS-EE------EEEEEE-SEE-EE-TTS-EEEEEEEEETT---EEEEEEEES
T ss_pred ccccccceeeeeccCCcceeeecccCCchhccc------cceeecCCCCceEEcCCCEEEEEeeeccCccceEEEEEEEC
Confidence 211233344442 2233598776655322210 01233333111 0 0112222 466666652
Q ss_pred ccccCCeEEeccCC-CCCCceeEEEE-CCEEEEEcCCCCCCCCCCCCCccccccccceecCceEEeC-CCCCeEE-CCCC
Q 016201 257 KALEKAWRTEIPIP-RGGPHRACFVF-NDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DEMKWKV-LPPM 332 (393)
Q Consensus 257 ~~~~~~W~~~~~~p-~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~-~~~~ 332 (393)
| ....|....-++ .....++++.- +++|+++.-.+... ..||+=. -.++|++ +..+
T Consensus 157 d-~g~~W~lskg~s~~gC~~psv~EWe~gkLlM~~~c~~g~-------------------rrVYeS~DmG~tWtea~gtl 216 (310)
T PF13859_consen 157 D-DGKTWKLSKGMSPAGCSDPSVVEWEDGKLLMMTACDDGR-------------------RRVYESGDMGTTWTEALGTL 216 (310)
T ss_dssp S-TTSS-EE-S----TT-EEEEEEEE-TTEEEEEEE-TTS----------------------EEEESSTTSS-EE-TTTT
T ss_pred C-CccceEeccccCCCCcceEEEEeccCCeeEEEEecccce-------------------EEEEEEcccceehhhccCcc
Confidence 2 478898876664 44445677777 88999987665431 2366554 4569998 4444
Q ss_pred C
Q 016201 333 P 333 (393)
Q Consensus 333 ~ 333 (393)
+
T Consensus 217 s 217 (310)
T PF13859_consen 217 S 217 (310)
T ss_dssp T
T ss_pred c
Confidence 4
No 168
>PTZ00420 coronin; Provisional
Probab=32.57 E-value=5.5e+02 Score=26.14 Aligned_cols=25 Identities=4% Similarity=0.381 Sum_probs=15.0
Q ss_pred CCEEEEEecCCCCCCccceEEEEECCC
Q 016201 128 KNLFYVFAGYGSLDYVHSHVDVYNFTD 154 (393)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~~~~yd~~~ 154 (393)
++..++.+|.+... ...+..||+..
T Consensus 225 d~~~IlTtG~d~~~--~R~VkLWDlr~ 249 (568)
T PTZ00420 225 DDNYILSTGFSKNN--MREMKLWDLKN 249 (568)
T ss_pred CCCEEEEEEcCCCC--ccEEEEEECCC
Confidence 44566666665432 24588888774
No 169
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=32.18 E-value=6.2e+02 Score=26.58 Aligned_cols=135 Identities=12% Similarity=0.150 Sum_probs=70.5
Q ss_pred CEEEEEecCCCCCCccceEEEEECCCCceEeCCCCCCCCCcceeEEEEeCCEEEEEeceeCCCCCCCCCeeEEEeCCCCC
Q 016201 129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK 208 (393)
Q Consensus 129 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~ 208 (393)
|.-+.+|+.. +.++-+|+-.+++.-....-.. .+..+....-++++.+.|+.++ .|-.||.....
T Consensus 319 GDWiA~g~~k-----lgQLlVweWqsEsYVlKQQgH~--~~i~~l~YSpDgq~iaTG~eDg--------KVKvWn~~Sgf 383 (893)
T KOG0291|consen 319 GDWIAFGCSK-----LGQLLVWEWQSESYVLKQQGHS--DRITSLAYSPDGQLIATGAEDG--------KVKVWNTQSGF 383 (893)
T ss_pred CCEEEEcCCc-----cceEEEEEeeccceeeeccccc--cceeeEEECCCCcEEEeccCCC--------cEEEEeccCce
Confidence 5555666532 3567777655555432222111 2444444446889999997554 36667766543
Q ss_pred eEeCCCCCCCCCCceEE--EECCEEEEEccCCCCCCCCCcceeEeeeeccccccCCeEEeccCCCCCCceeEEEEC--CE
Q 016201 209 WDSIPPLPSPRYSPATQ--LWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFN--DR 284 (393)
Q Consensus 209 W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~p~~~~~~~~~~~~--~~ 284 (393)
..-. ...+-..++++ ..+++..+.... +..+..||+..|. -.+.. ..|.+. .+++++++ |.
T Consensus 384 C~vT--FteHts~Vt~v~f~~~g~~llssSL-----DGtVRAwDlkRYr------NfRTf-t~P~p~-QfscvavD~sGe 448 (893)
T KOG0291|consen 384 CFVT--FTEHTSGVTAVQFTARGNVLLSSSL-----DGTVRAWDLKRYR------NFRTF-TSPEPI-QFSCVAVDPSGE 448 (893)
T ss_pred EEEE--eccCCCceEEEEEEecCCEEEEeec-----CCeEEeeeecccc------eeeee-cCCCce-eeeEEEEcCCCC
Confidence 3211 11122333333 235555555333 4578888875443 12222 123322 34777777 88
Q ss_pred EEEEcCCCC
Q 016201 285 LFVVGGQEG 293 (393)
Q Consensus 285 iyv~GG~~~ 293 (393)
|.+.|+.+.
T Consensus 449 lV~AG~~d~ 457 (893)
T KOG0291|consen 449 LVCAGAQDS 457 (893)
T ss_pred EEEeeccce
Confidence 999998764
No 170
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=31.83 E-value=5.1e+02 Score=25.54 Aligned_cols=97 Identities=5% Similarity=0.062 Sum_probs=55.1
Q ss_pred ceeeccCCCCCeEEcCCCCccccCccEEEECCEEEEEecCCCCCCccceEEEEECCCCceEeCCCCCCCCCcceeEEEEe
Q 016201 98 TFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSD 177 (393)
Q Consensus 98 ~~~~~~~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~ 177 (393)
.+|.-.....+.++.-.|+..- .+-+.++++||.+--.++.. .++.-|+..+.-++-..+.. +.+.-+..
T Consensus 207 klWis~d~g~tFeK~vdl~~~v--S~PmIV~~RvYFlsD~eG~G----nlYSvdldGkDlrrHTnFtd----YY~R~~ns 276 (668)
T COG4946 207 KLWISSDGGKTFEKFVDLDGNV--SSPMIVGERVYFLSDHEGVG----NLYSVDLDGKDLRRHTNFTD----YYPRNANS 276 (668)
T ss_pred eEEEEecCCcceeeeeecCCCc--CCceEEcceEEEEecccCcc----ceEEeccCCchhhhcCCchh----ccccccCC
Confidence 3444433334555555554322 23356699999998777654 35556666665444333322 12222334
Q ss_pred CCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCC
Q 016201 178 GRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIP 213 (393)
Q Consensus 178 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~ 213 (393)
+|+=.||- .-.++|.|||+++.-+++.
T Consensus 277 DGkrIvFq---------~~GdIylydP~td~lekld 303 (668)
T COG4946 277 DGKRIVFQ---------NAGDIYLYDPETDSLEKLD 303 (668)
T ss_pred CCcEEEEe---------cCCcEEEeCCCcCcceeee
Confidence 66666662 1356999999999887765
No 171
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=31.40 E-value=3.8e+02 Score=23.85 Aligned_cols=132 Identities=14% Similarity=0.106 Sum_probs=76.3
Q ss_pred hhcceeeccCCCCCeEEcCCCCccccCccEEEECCEEEEEecCCCCCCccceEEEEECCCCceEeCCCCCCCCCcceeEE
Q 016201 95 LSATFADLPAPDLEWEQMPSAPVPRLDGAAIQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGV 174 (393)
Q Consensus 95 ~~~~~~~~~~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~ 174 (393)
+...+..+|..+++-+++.-+.+.+.+-..+.+.+..+|.|..++. +..||+...+-.. .-+..|. .+..
T Consensus 121 fD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGt------vRtydiR~G~l~s-Dy~g~pi---t~vs 190 (307)
T KOG0316|consen 121 FDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGT------VRTYDIRKGTLSS-DYFGHPI---TSVS 190 (307)
T ss_pred ccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCc------EEEEEeecceeeh-hhcCCcc---eeEE
Confidence 3346788888888888877788888888888888989898887753 6779987766321 2233332 2222
Q ss_pred EEeCCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeE----eCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceeE
Q 016201 175 VSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWD----SIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWS 250 (393)
Q Consensus 175 ~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~----~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 250 (393)
..-++..-++|-.+ +.+...|-+|.+-- -...+.. ---+++.+..-.|++|.. ...+..|+
T Consensus 191 ~s~d~nc~La~~l~--------stlrLlDk~tGklL~sYkGhkn~ey---kldc~l~qsdthV~sgSE----DG~Vy~wd 255 (307)
T KOG0316|consen 191 FSKDGNCSLASSLD--------STLRLLDKETGKLLKSYKGHKNMEY---KLDCCLNQSDTHVFSGSE----DGKVYFWD 255 (307)
T ss_pred ecCCCCEEEEeecc--------ceeeecccchhHHHHHhccccccee---eeeeeecccceeEEeccC----CceEEEEE
Confidence 33344555555322 23444555554311 1112221 112334445566777765 45677777
Q ss_pred e
Q 016201 251 I 251 (393)
Q Consensus 251 ~ 251 (393)
+
T Consensus 256 L 256 (307)
T KOG0316|consen 256 L 256 (307)
T ss_pred e
Confidence 6
No 172
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=29.23 E-value=3.6e+02 Score=22.95 Aligned_cols=88 Identities=9% Similarity=0.023 Sum_probs=49.8
Q ss_pred cCCCCCCccceEEEEECCCCceEeC--CCCCC-CCCcceeEEEEeCCE-EEEEeceeCCCCCCCCCeeEEEeCCCCCeEe
Q 016201 136 GYGSLDYVHSHVDVYNFTDNKWVDR--FDMPK-DMAHSHLGVVSDGRY-IYIVSGQYGPQCRGPTSRTFVLDSETRKWDS 211 (393)
Q Consensus 136 G~~~~~~~~~~~~~yd~~~~~W~~~--~~~~~-~~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~ 211 (393)
|-++.......++.+|..++.|..+ .+.+. -.|. ...-..+.. ++|+|...+.- ..-..++.|++.++.=+.
T Consensus 79 g~~a~eEgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK--~i~WiDD~~L~vIIG~a~GTv--S~GGnLy~~nl~tg~~~~ 154 (200)
T PF15525_consen 79 GPEAEEEGIGKIYIKNLNNNNWWSLQIDQNEEKYSPK--YIEWIDDNNLAVIIGYAHGTV--SKGGNLYKYNLNTGNLTE 154 (200)
T ss_pred CCccccccceeEEEEecCCCceEEEEecCcccccCCc--eeEEecCCcEEEEEccccceE--ccCCeEEEEEccCCceeE
Confidence 3344445567899999998888765 22221 1112 233334444 45555322211 224679999999999888
Q ss_pred CCCCCCCCCCceEEEE
Q 016201 212 IPPLPSPRYSPATQLW 227 (393)
Q Consensus 212 ~~~~p~~r~~~~~~~~ 227 (393)
+-+....+.....+..
T Consensus 155 ly~~~dkkqQVis~e~ 170 (200)
T PF15525_consen 155 LYEWKDKKQQVISAEK 170 (200)
T ss_pred eeeccccceeEEEEEE
Confidence 8776554444333333
No 173
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=28.95 E-value=4.5e+02 Score=24.02 Aligned_cols=114 Identities=9% Similarity=0.037 Sum_probs=56.7
Q ss_pred EEECCEEEEEecCCCCCCccceEEEEECCCCceEeCCCCCCCCCcceeEE--EEeCCEEEEEeceeCCCCCCCCCeeEEE
Q 016201 125 IQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGV--VSDGRYIYIVSGQYGPQCRGPTSRTFVL 202 (393)
Q Consensus 125 ~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~--~~~~~~iyv~GG~~~~~~~~~~~~v~~y 202 (393)
+.-++.+|+.-= .-+-+-+.||.+..=+.++. |.+. ....-- +.-.+.+++.- .-...+++|
T Consensus 196 atpdGsvwyasl------agnaiaridp~~~~aev~p~-P~~~-~~gsRriwsdpig~~witt--------wg~g~l~rf 259 (353)
T COG4257 196 ATPDGSVWYASL------AGNAIARIDPFAGHAEVVPQ-PNAL-KAGSRRIWSDPIGRAWITT--------WGTGSLHRF 259 (353)
T ss_pred ECCCCcEEEEec------cccceEEcccccCCcceecC-CCcc-cccccccccCccCcEEEec--------cCCceeeEe
Confidence 444777877511 11345566776664333321 1110 111111 12346677761 114569999
Q ss_pred eCCCCCeEeCC-CCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceeEeeeeccccccCCeEEe
Q 016201 203 DSETRKWDSIP-PLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTE 266 (393)
Q Consensus 203 d~~~~~W~~~~-~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~d~~~~~~~W~~~ 266 (393)
||.+.+|.+-+ +-..+|....-+--.+++++.- --.+.+.+|| |++.+.+.+
T Consensus 260 dPs~~sW~eypLPgs~arpys~rVD~~grVW~se-----a~agai~rfd-------peta~ftv~ 312 (353)
T COG4257 260 DPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSE-----ADAGAIGRFD-------PETARFTVL 312 (353)
T ss_pred CcccccceeeeCCCCCCCcceeeeccCCcEEeec-----cccCceeecC-------cccceEEEe
Confidence 99999998865 2223444333333344555431 1133444444 677777665
No 174
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=28.54 E-value=5.1e+02 Score=24.51 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=16.8
Q ss_pred ccEEEEecCCCCCCCCcccceeeeeecCCCce
Q 016201 32 ADFMWASSSSSFSSSSAHLSVASNWALEKSGV 63 (393)
Q Consensus 32 ~~~ly~~GG~~~g~~~~~~~~~~~~d~~~~~W 63 (393)
.|.-|+.|+. |+ ++.++|+.+..-
T Consensus 162 ~n~wf~tgs~-Dr-------tikIwDlatg~L 185 (460)
T KOG0285|consen 162 GNEWFATGSA-DR-------TIKIWDLATGQL 185 (460)
T ss_pred CceeEEecCC-Cc-------eeEEEEcccCeE
Confidence 4666777766 66 778888877664
No 175
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=28.36 E-value=4.6e+02 Score=23.89 Aligned_cols=100 Identities=15% Similarity=0.185 Sum_probs=55.5
Q ss_pred CEEEEEecCCCCCCccceEEEEECCCCceEeCCCCCCCCCcceeEEEEeCCEEEEEeceeCCCCCCCCCeeEEEeCCCCC
Q 016201 129 NLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK 208 (393)
Q Consensus 129 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~ 208 (393)
+-++|-+|.+ +.|-++|+.+.+=. ..++.-........+..+|.+.+.||.++. +..+|....+
T Consensus 162 ~p~Ivs~s~D------ktvKvWnl~~~~l~--~~~~gh~~~v~t~~vSpDGslcasGgkdg~--------~~LwdL~~~k 225 (315)
T KOG0279|consen 162 NPIIVSASWD------KTVKVWNLRNCQLR--TTFIGHSGYVNTVTVSPDGSLCASGGKDGE--------AMLWDLNEGK 225 (315)
T ss_pred CcEEEEccCC------ceEEEEccCCcchh--hccccccccEEEEEECCCCCEEecCCCCce--------EEEEEccCCc
Confidence 4466666665 34777787766532 233332223344555579999999997653 4445544332
Q ss_pred eEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceeEe
Q 016201 209 WDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSI 251 (393)
Q Consensus 209 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 251 (393)
= +-.+...-.-++++...++..++-+. ..++..|++
T Consensus 226 ~--lysl~a~~~v~sl~fspnrywL~~at-----~~sIkIwdl 261 (315)
T KOG0279|consen 226 N--LYSLEAFDIVNSLCFSPNRYWLCAAT-----ATSIKIWDL 261 (315)
T ss_pred e--eEeccCCCeEeeEEecCCceeEeecc-----CCceEEEec
Confidence 1 22333333445666666776666554 345666765
No 176
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=27.88 E-value=6.2e+02 Score=25.25 Aligned_cols=179 Identities=16% Similarity=0.290 Sum_probs=90.5
Q ss_pred ECCEEEEEecCCCCCCccceEEEEECCCCceEeCC-------CCCCCCCcceeEEEEe------CCEEEEEeceeCCCCC
Q 016201 127 IKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRF-------DMPKDMAHSHLGVVSD------GRYIYIVSGQYGPQCR 193 (393)
Q Consensus 127 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~-------~~~~~~~r~~~~~~~~------~~~iyv~GG~~~~~~~ 193 (393)
-++.|+|+-|. .....||-...+|.++. +|... ..|-+...+ +...|+..+.++.
T Consensus 225 Tg~~iLvvsg~-------aqakl~DRdG~~~~e~~KGDQYI~Dm~nT--KGHia~lt~g~whP~~k~~FlT~s~Dgt--- 292 (641)
T KOG0772|consen 225 TGDQILVVSGS-------AQAKLLDRDGFEIVEFSKGDQYIRDMYNT--KGHIAELTCGCWHPDNKEEFLTCSYDGT--- 292 (641)
T ss_pred CCCeEEEEecC-------cceeEEccCCceeeeeeccchhhhhhhcc--CCceeeeeccccccCcccceEEecCCCc---
Confidence 36788888774 45667888888887642 33321 223222222 3456666665442
Q ss_pred CCCCeeEEEeCCC--CCeEeCC--CCCCCCCCceEEEE--CCEEEEEccCCCCCCCCCcceeEeeeeccccccCCeEEec
Q 016201 194 GPTSRTFVLDSET--RKWDSIP--PLPSPRYSPATQLW--RGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEI 267 (393)
Q Consensus 194 ~~~~~v~~yd~~~--~~W~~~~--~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~ 267 (393)
+-.+|... .+-+.+. ++...|...+.|.. ++++ +.+|+. ..++..|+. ..|..-+
T Consensus 293 -----lRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~-iAagc~----DGSIQ~W~~---------~~~~v~p 353 (641)
T KOG0772|consen 293 -----LRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKL-IAAGCL----DGSIQIWDK---------GSRTVRP 353 (641)
T ss_pred -----EEEEecCCchhheeEEeeccCCCcccCceeeecCCCcch-hhhccc----CCceeeeec---------CCccccc
Confidence 22222221 1112222 22334555555544 4455 555554 346666652 3343322
Q ss_pred -------cCCCCCCceeEEEECCEEEEEcCCCCCCCCCCCCCccccccccceecCceEEeC-CC---CCeEECCCCCCCC
Q 016201 268 -------PIPRGGPHRACFVFNDRLFVVGGQEGDFMAKPGSPIFKCSRRHEVVYGDVYMLD-DE---MKWKVLPPMPKPN 336 (393)
Q Consensus 268 -------~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~---~~W~~~~~~~~~r 336 (393)
..+........+..++++++--|.+.. -.+|.++ .. +.|+-+.. +-
T Consensus 354 ~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t--------------------LKvWDLrq~kkpL~~~tgL~t---~~ 410 (641)
T KOG0772|consen 354 VMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT--------------------LKVWDLRQFKKPLNVRTGLPT---PF 410 (641)
T ss_pred ceEeeeccCCCCceeEEEeccccchhhhccCCCc--------------------eeeeeccccccchhhhcCCCc---cC
Confidence 234333333445558888877766643 1266665 33 26655543 22
Q ss_pred CCcceeEEEECCEEEEEcCcCCCC
Q 016201 337 SHIECAWVIVNNSIIITGGTTEKH 360 (393)
Q Consensus 337 ~~~~~~~~~~~~~i~v~GG~~~~~ 360 (393)
....| +...+.+|++.|-....+
T Consensus 411 ~~tdc-~FSPd~kli~TGtS~~~~ 433 (641)
T KOG0772|consen 411 PGTDC-CFSPDDKLILTGTSAPNG 433 (641)
T ss_pred CCCcc-ccCCCceEEEecccccCC
Confidence 22233 367788888887654433
No 177
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=27.42 E-value=4.3e+02 Score=26.28 Aligned_cols=85 Identities=9% Similarity=-0.016 Sum_probs=48.2
Q ss_pred CccceEEEEECCCCceEeCCCCCCCCCcceeEEEEeCCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCCCCCCCCC
Q 016201 142 YVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYS 221 (393)
Q Consensus 142 ~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~ 221 (393)
..++.+..+|+.++.=-.-+++.. -.+-.+...++.+.+++|..+.. .-.+...|+.+-.-.+-+.-+..+..
T Consensus 372 ~~ls~LvllD~~tg~~l~~S~~~~---Ir~r~~~~~~~~~vaI~g~~G~~----~ikLvlid~~tLev~kes~~~i~~~S 444 (489)
T PF05262_consen 372 HYLSELVLLDSDTGDTLKRSPVNG---IRGRTFYEREDDLVAIAGCSGNA----AIKLVLIDPETLEVKKESEDEISWQS 444 (489)
T ss_pred CcceeEEEEeCCCCceecccccce---eccceeEEcCCCEEEEeccCCch----heEEEecCcccceeeeeccccccccC
Confidence 356889999999986443344433 22334556678888888875433 22244446776654444433333322
Q ss_pred ceEEEECCEEEEE
Q 016201 222 PATQLWRGRLHVM 234 (393)
Q Consensus 222 ~~~~~~~~~iyv~ 234 (393)
.+.+.++.+|++
T Consensus 445 -~l~~~~~~iyaV 456 (489)
T PF05262_consen 445 -SLIVDGQMIYAV 456 (489)
T ss_pred -ceEEcCCeEEEE
Confidence 344446667755
No 178
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=27.22 E-value=6.1e+02 Score=24.93 Aligned_cols=22 Identities=9% Similarity=0.368 Sum_probs=16.1
Q ss_pred CEEEEEecCCCCCCccceEEEEECCCCc
Q 016201 129 NLFYVFAGYGSLDYVHSHVDVYNFTDNK 156 (393)
Q Consensus 129 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 156 (393)
..++++||.+. .+..+|+.+++
T Consensus 312 ~n~fl~G~sd~------ki~~wDiRs~k 333 (503)
T KOG0282|consen 312 QNIFLVGGSDK------KIRQWDIRSGK 333 (503)
T ss_pred CcEEEEecCCC------cEEEEeccchH
Confidence 48999999764 46667777665
No 179
>PRK10115 protease 2; Provisional
Probab=26.47 E-value=7.6e+02 Score=25.81 Aligned_cols=133 Identities=14% Similarity=0.100 Sum_probs=61.6
Q ss_pred ceEEEEECCCCce--EeCCCCCCCCCcceeEEEEe-CCEEEEEeceeCCCCCCCCCeeEEEeC--CCCCeEeCCCCCCCC
Q 016201 145 SHVDVYNFTDNKW--VDRFDMPKDMAHSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFVLDS--ETRKWDSIPPLPSPR 219 (393)
Q Consensus 145 ~~~~~yd~~~~~W--~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~--~~~~W~~~~~~p~~r 219 (393)
.+++++++.+..- ..+-.-+.+ ......... +++..++..... ..+.++.|+. .+..|..+.+.+..
T Consensus 199 ~~v~~h~lgt~~~~d~lv~~e~~~--~~~~~~~~s~d~~~l~i~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~- 270 (686)
T PRK10115 199 YQVWRHTIGTPASQDELVYEEKDD--TFYVSLHKTTSKHYVVIHLASA-----TTSEVLLLDAELADAEPFVFLPRRKD- 270 (686)
T ss_pred CEEEEEECCCChhHCeEEEeeCCC--CEEEEEEEcCCCCEEEEEEECC-----ccccEEEEECcCCCCCceEEEECCCC-
Confidence 6799999998832 122111111 122233333 444333443222 2456888883 23344333222222
Q ss_pred CCceEEEECCEEEEEccCCCCCCCCCcceeEeeeeccccccCCeEEeccCCCCCCceeEEEECCEEEEEcCCCC
Q 016201 220 YSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHRACFVFNDRLFVVGGQEG 293 (393)
Q Consensus 220 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~ 293 (393)
........++.+|+.--.. ...+.+...+.+ ...+|+.+-+......--.+...++.|++..-.++
T Consensus 271 ~~~~~~~~~~~ly~~tn~~-------~~~~~l~~~~~~-~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g 336 (686)
T PRK10115 271 HEYSLDHYQHRFYLRSNRH-------GKNFGLYRTRVR-DEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRG 336 (686)
T ss_pred CEEEEEeCCCEEEEEEcCC-------CCCceEEEecCC-CcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCC
Confidence 2223334467888884332 122223322322 14689887655222111234445787777764443
No 180
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=26.34 E-value=4.8e+02 Score=23.43 Aligned_cols=99 Identities=9% Similarity=0.037 Sum_probs=51.5
Q ss_pred hcceeeccCCCCCeEEcCCCCccccCccEE--EECCEEEEEecCCCCCCccceEEEEECCCCceEeCCCCCCCCCcceeE
Q 016201 96 SATFADLPAPDLEWEQMPSAPVPRLDGAAI--QIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLG 173 (393)
Q Consensus 96 ~~~~~~~~~~~~~W~~~~~~~~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~ 173 (393)
+..+-.||..+++=..+...-.++..-.++ ..+++-...||.++. +.++|+..-.-++.-..+.|+ -.
T Consensus 60 ~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt------~kIWdlR~~~~qR~~~~~spV----n~ 129 (311)
T KOG0315|consen 60 NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGT------VKIWDLRSLSCQRNYQHNSPV----NT 129 (311)
T ss_pred CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCce------EEEEeccCcccchhccCCCCc----ce
Confidence 446788888775511111112222332232 236777777887653 556676664444433333321 13
Q ss_pred EEEeCCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEe
Q 016201 174 VVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDS 211 (393)
Q Consensus 174 ~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~ 211 (393)
++..-++-=++.| .....++.+|..++..+.
T Consensus 130 vvlhpnQteLis~-------dqsg~irvWDl~~~~c~~ 160 (311)
T KOG0315|consen 130 VVLHPNQTELISG-------DQSGNIRVWDLGENSCTH 160 (311)
T ss_pred EEecCCcceEEee-------cCCCcEEEEEccCCcccc
Confidence 3444444444433 224558999999987654
No 181
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=26.09 E-value=5.3e+02 Score=23.83 Aligned_cols=145 Identities=18% Similarity=0.250 Sum_probs=78.8
Q ss_pred CccEEEECCEEEEEecCCC---------C-C------CccceEEEEECCCCc----eEeCCCCCCCCCcceeEEEE----
Q 016201 121 DGAAIQIKNLFYVFAGYGS---------L-D------YVHSHVDVYNFTDNK----WVDRFDMPKDMAHSHLGVVS---- 176 (393)
Q Consensus 121 ~~~~~~~~~~iyv~GG~~~---------~-~------~~~~~~~~yd~~~~~----W~~~~~~~~~~~r~~~~~~~---- 176 (393)
..++..+++.||. ||+-- . + .-.+.+..||.++++ |++--.-+ +..++=++
T Consensus 39 YNAV~~vDd~IyF-GGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~~----~~WaGEVSdIlY 113 (339)
T PF09910_consen 39 YNAVEWVDDFIYF-GGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHDK----TKWAGEVSDILY 113 (339)
T ss_pred ceeeeeecceEEE-eeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCCc----cccccchhheee
Confidence 3556667777774 66411 0 0 112689999999887 55432222 22222221
Q ss_pred --eCCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceeEeeee
Q 016201 177 --DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVK 254 (393)
Q Consensus 177 --~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~ 254 (393)
+++.+++.=+ ++. ..--+|..|..+..=+++..-|... .+.+.+..+|-+ .+-....+.+.++|+
T Consensus 114 dP~~D~LLlAR~-DGh----~nLGvy~ldr~~g~~~~L~~~ps~K---G~~~~D~a~F~i--~~~~~g~~~i~~~Dl--- 180 (339)
T PF09910_consen 114 DPYEDRLLLARA-DGH----ANLGVYSLDRRTGKAEKLSSNPSLK---GTLVHDYACFGI--NNFHKGVSGIHCLDL--- 180 (339)
T ss_pred CCCcCEEEEEec-CCc----ceeeeEEEcccCCceeeccCCCCcC---ceEeeeeEEEec--cccccCCceEEEEEc---
Confidence 3677877743 221 1334788888888777777655442 444445444433 222334667788886
Q ss_pred ccccccCCe--EEecc--------CCCCCCceeEEEECCEEEEE
Q 016201 255 DGKALEKAW--RTEIP--------IPRGGPHRACFVFNDRLFVV 288 (393)
Q Consensus 255 d~~~~~~~W--~~~~~--------~p~~~~~~~~~~~~~~iyv~ 288 (393)
.+++| +..+. .-++.. -.++...+++|.|
T Consensus 181 ----i~~~~~~e~f~~~~s~Dg~~~~~~~~-G~~~s~ynR~faF 219 (339)
T PF09910_consen 181 ----ISGKWVIESFDVSLSVDGGPVIRPEL-GAMASAYNRLFAF 219 (339)
T ss_pred ----cCCeEEEEecccccCCCCCceEeecc-ccEEEEeeeEEEE
Confidence 78888 43321 112222 2456677777665
No 182
>PRK10115 protease 2; Provisional
Probab=25.99 E-value=7.8e+02 Score=25.75 Aligned_cols=84 Identities=14% Similarity=0.136 Sum_probs=46.1
Q ss_pred ceEEEEEC--CCCceEeCCCCCCCCCcceeEEEEeCCEEEEEeceeCCCCCCCCCeeEEEeCC-CCCeEeCCCCCCCCCC
Q 016201 145 SHVDVYNF--TDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSE-TRKWDSIPPLPSPRYS 221 (393)
Q Consensus 145 ~~~~~yd~--~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~-~~~W~~~~~~p~~r~~ 221 (393)
+.++.|+. .+..|..+.+.+. ...+.....++.+|+.--.+ .+...+...+.. +..|+.+-+....+.-
T Consensus 247 ~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ly~~tn~~-----~~~~~l~~~~~~~~~~~~~l~~~~~~~~i 318 (686)
T PRK10115 247 SEVLLLDAELADAEPFVFLPRRK---DHEYSLDHYQHRFYLRSNRH-----GKNFGLYRTRVRDEQQWEELIPPRENIML 318 (686)
T ss_pred ccEEEEECcCCCCCceEEEECCC---CCEEEEEeCCCEEEEEEcCC-----CCCceEEEecCCCcccCeEEECCCCCCEE
Confidence 56777773 3344443333332 22334445578888885322 224456777776 5779887654323333
Q ss_pred ceEEEECCEEEEEcc
Q 016201 222 PATQLWRGRLHVMGG 236 (393)
Q Consensus 222 ~~~~~~~~~iyv~GG 236 (393)
-.+.+..+.|++..-
T Consensus 319 ~~~~~~~~~l~~~~~ 333 (686)
T PRK10115 319 EGFTLFTDWLVVEER 333 (686)
T ss_pred EEEEEECCEEEEEEE
Confidence 345556777777743
No 183
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=25.77 E-value=3.5e+02 Score=21.64 Aligned_cols=47 Identities=15% Similarity=0.275 Sum_probs=26.8
Q ss_pred CEEEEEeceeCCCCCCCCCeeEEEeCCCCC---eEeCCCCCCCCCCceEEE---ECCEEEEEccC
Q 016201 179 RYIYIVSGQYGPQCRGPTSRTFVLDSETRK---WDSIPPLPSPRYSPATQL---WRGRLHVMGGS 237 (393)
Q Consensus 179 ~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~---W~~~~~~p~~r~~~~~~~---~~~~iyv~GG~ 237 (393)
.-+.++|- .+.+..||.+.|. ++++++ ......... ....+.++||-
T Consensus 64 ~D~LliGt---------~t~llaYDV~~N~d~Fyke~~D---Gvn~i~~g~~~~~~~~l~ivGGn 116 (136)
T PF14781_consen 64 RDCLLIGT---------QTSLLAYDVENNSDLFYKEVPD---GVNAIVIGKLGDIPSPLVIVGGN 116 (136)
T ss_pred cCEEEEec---------cceEEEEEcccCchhhhhhCcc---ceeEEEEEecCCCCCcEEEECce
Confidence 45677763 5679999999886 344332 211111111 24568888874
No 184
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=24.86 E-value=6.1e+02 Score=24.16 Aligned_cols=83 Identities=18% Similarity=0.176 Sum_probs=50.0
Q ss_pred ceEEEEECCCC-----ceEeCCCCCCCCCcceeEEEEeCCEEEEEeceeCCCCCCCCCeeEEEeCCCCC---eE-eCCCC
Q 016201 145 SHVDVYNFTDN-----KWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETRK---WD-SIPPL 215 (393)
Q Consensus 145 ~~~~~yd~~~~-----~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~---W~-~~~~~ 215 (393)
+.++..|.... .|+.+.+-.. -....+...++.+|+.-..+ .+...+..+++.+.. |. .+.+-
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~~~~---~~~~~v~~~~~~~yi~Tn~~-----a~~~~l~~~~l~~~~~~~~~~~l~~~ 323 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSPRED---GVEYYVDHHGDRLYILTNDD-----APNGRLVAVDLADPSPAEWWTVLIPE 323 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEESSS---S-EEEEEEETTEEEEEE-TT------TT-EEEEEETTSTSGGGEEEEEE--
T ss_pred CeEEEEeccccCCCcCCcEEEeCCCC---ceEEEEEccCCEEEEeeCCC-----CCCcEEEEecccccccccceeEEcCC
Confidence 67899999875 7887754221 22344555699999986422 335678888888776 66 44432
Q ss_pred CCCCCCceEEEECCEEEEEc
Q 016201 216 PSPRYSPATQLWRGRLHVMG 235 (393)
Q Consensus 216 p~~r~~~~~~~~~~~iyv~G 235 (393)
......-.+.+.++.|++.-
T Consensus 324 ~~~~~l~~~~~~~~~Lvl~~ 343 (414)
T PF02897_consen 324 DEDVSLEDVSLFKDYLVLSY 343 (414)
T ss_dssp SSSEEEEEEEEETTEEEEEE
T ss_pred CCceeEEEEEEECCEEEEEE
Confidence 22233445556788888774
No 185
>PF08950 DUF1861: Protein of unknown function (DUF1861); InterPro: IPR015045 This hypothetical protein, found in bacteria and in the eukaryote Leishmania, has no known function. ; PDB: 2B4W_A.
Probab=24.27 E-value=3.2e+02 Score=24.77 Aligned_cols=61 Identities=16% Similarity=0.121 Sum_probs=38.8
Q ss_pred EEECCEEEEEecCCCCCC-ccceEEEEECC-CCceEeCCCCCCCCCcceeEEEEeCCEEEEEece
Q 016201 125 IQIKNLFYVFAGYGSLDY-VHSHVDVYNFT-DNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQ 187 (393)
Q Consensus 125 ~~~~~~iyv~GG~~~~~~-~~~~~~~yd~~-~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~ 187 (393)
...+++.+++|-....+. ..+.|.-|.-. .++|+.++..+.- .....-++-+++.+ |+||.
T Consensus 33 F~~~Gk~~IaGRVE~Rdswe~S~V~fF~e~g~~~w~~v~~~~~~-~LqDPF~t~I~gel-ifGGv 95 (298)
T PF08950_consen 33 FEYNGKTVIAGRVEKRDSWEHSEVRFFEETGKDEWTPVEGAPVF-QLQDPFVTRIQGEL-IFGGV 95 (298)
T ss_dssp EEETTEEEEEEEEE-TT-SS--EEEEEEEEETTEEEE-TT---B-S-EEEEEEEETTEE-EEEEE
T ss_pred eeECCEEEEEeeeecCCchhccEEEEEEEeCCCeEEECCCcceE-EecCcceeeECCEE-EEeeE
Confidence 566899999998876655 45667777665 8999999875552 35677788889976 45664
No 186
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=24.09 E-value=5.3e+02 Score=23.17 Aligned_cols=53 Identities=17% Similarity=0.243 Sum_probs=32.3
Q ss_pred CCEEEEEecCCCCCCccceEEEEECCCCceEeCC--CCCCCCCcceeEEEEeCCEEEEEeceeC
Q 016201 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRF--DMPKDMAHSHLGVVSDGRYIYIVSGQYG 189 (393)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~--~~~~~~~r~~~~~~~~~~~iyv~GG~~~ 189 (393)
+..+||.||.+. -+++||-.|..=...- .-+.| .++.-..-+|.+|..|..++
T Consensus 235 ~k~~fVaGged~------~~~kfDy~TgeEi~~~nkgh~gp---VhcVrFSPdGE~yAsGSEDG 289 (334)
T KOG0278|consen 235 KKEFFVAGGEDF------KVYKFDYNTGEEIGSYNKGHFGP---VHCVRFSPDGELYASGSEDG 289 (334)
T ss_pred CCceEEecCcce------EEEEEeccCCceeeecccCCCCc---eEEEEECCCCceeeccCCCc
Confidence 457999999763 3778888877633221 11111 13333345899999997655
No 187
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=23.48 E-value=6.8e+02 Score=24.20 Aligned_cols=94 Identities=12% Similarity=0.053 Sum_probs=46.5
Q ss_pred eCCEEEEEeceeCCCCCCCCCeeEEEeCCCCCeEeCCCCCCCCCCceEEE-ECCEEEEEccCCCCCCCCCcceeEeeeec
Q 016201 177 DGRYIYIVSGQYGPQCRGPTSRTFVLDSETRKWDSIPPLPSPRYSPATQL-WRGRLHVMGGSKENRHTPGLEHWSIAVKD 255 (393)
Q Consensus 177 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~d 255 (393)
.+|.+.+.||.+.... ++|..+..-...=.- .-+.-+++.. -||+....||. ++...+|++.
T Consensus 313 ~DGSL~~tGGlD~~~R--------vWDlRtgr~im~L~g-H~k~I~~V~fsPNGy~lATgs~-----Dnt~kVWDLR--- 375 (459)
T KOG0272|consen 313 PDGSLAATGGLDSLGR--------VWDLRTGRCIMFLAG-HIKEILSVAFSPNGYHLATGSS-----DNTCKVWDLR--- 375 (459)
T ss_pred CCCceeeccCccchhh--------eeecccCcEEEEecc-cccceeeEeECCCceEEeecCC-----CCcEEEeeec---
Confidence 5899999999766432 245544432221110 1112222222 26666666665 4677888872
Q ss_pred cccccCCeEEeccCCCCCCceeEEE---ECCEEEEEcCCCC
Q 016201 256 GKALEKAWRTEIPIPRGGPHRACFV---FNDRLFVVGGQEG 293 (393)
Q Consensus 256 ~~~~~~~W~~~~~~p~~~~~~~~~~---~~~~iyv~GG~~~ 293 (393)
.... +-.+|.-..-.+-|- ..|+.++.++++.
T Consensus 376 ---~r~~---ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~ 410 (459)
T KOG0272|consen 376 ---MRSE---LYTIPAHSNLVSQVKYSPQEGYFLVTASYDN 410 (459)
T ss_pred ---cccc---ceecccccchhhheEecccCCeEEEEcccCc
Confidence 1111 222332221111111 2577888888775
No 188
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=23.28 E-value=5.5e+02 Score=23.06 Aligned_cols=53 Identities=15% Similarity=0.122 Sum_probs=28.7
Q ss_pred CCEEEEEecCCCCCCccceEEEEECCCCceEeCCCCCCCCCcceeEEEE--eCCEEEEEeceeC
Q 016201 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVS--DGRYIYIVSGQYG 189 (393)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~ 189 (393)
+++.++++|. ..+..||+.++.=..+...-. .+....++. .+++-...||.++
T Consensus 51 dk~~LAaa~~-------qhvRlyD~~S~np~Pv~t~e~--h~kNVtaVgF~~dgrWMyTgseDg 105 (311)
T KOG0315|consen 51 DKKDLAAAGN-------QHVRLYDLNSNNPNPVATFEG--HTKNVTAVGFQCDGRWMYTGSEDG 105 (311)
T ss_pred CcchhhhccC-------CeeEEEEccCCCCCceeEEec--cCCceEEEEEeecCeEEEecCCCc
Confidence 4556666664 458889998876222222211 122323322 4677777777554
No 189
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=22.24 E-value=7.5e+02 Score=24.21 Aligned_cols=83 Identities=13% Similarity=0.176 Sum_probs=41.3
Q ss_pred CeeEEEeCCCC-C-eEeCCCCCCCCCCceEE-EECCEEEEEccCCCCCCCCCcceeEeeeeccccccCCeEEeccCCCCC
Q 016201 197 SRTFVLDSETR-K-WDSIPPLPSPRYSPATQ-LWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGG 273 (393)
Q Consensus 197 ~~v~~yd~~~~-~-W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~p~~~ 273 (393)
..+.+||...+ . =..+...+... ++++ .-.+.+++.|+.+ ..+..|++ .+.+-...-..-...
T Consensus 225 ~tiriwd~~~~~~~~~~l~gH~~~v--~~~~f~p~g~~i~Sgs~D-----~tvriWd~-------~~~~~~~~l~~hs~~ 290 (456)
T KOG0266|consen 225 KTLRIWDLKDDGRNLKTLKGHSTYV--TSVAFSPDGNLLVSGSDD-----GTVRIWDV-------RTGECVRKLKGHSDG 290 (456)
T ss_pred ceEEEeeccCCCeEEEEecCCCCce--EEEEecCCCCEEEEecCC-----CcEEEEec-------cCCeEEEeeeccCCc
Confidence 34777888443 2 23333444333 2222 2245788888764 57888886 332222211111222
Q ss_pred CceeEEEECCEEEEEcCCCC
Q 016201 274 PHRACFVFNDRLFVVGGQEG 293 (393)
Q Consensus 274 ~~~~~~~~~~~iyv~GG~~~ 293 (393)
....++.-++.+++.+..++
T Consensus 291 is~~~f~~d~~~l~s~s~d~ 310 (456)
T KOG0266|consen 291 ISGLAFSPDGNLLVSASYDG 310 (456)
T ss_pred eEEEEECCCCCEEEEcCCCc
Confidence 22223334777888886654
No 190
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=22.13 E-value=3.1e+02 Score=25.74 Aligned_cols=82 Identities=22% Similarity=0.299 Sum_probs=49.3
Q ss_pred CeeEEEeCCCCCeEeCCCCCCCCCCceEEEECCEEEEEccCCCCCCCCCcceeEeeeeccccccCCeEEeccCCCCCCce
Q 016201 197 SRTFVLDSETRKWDSIPPLPSPRYSPATQLWRGRLHVMGGSKENRHTPGLEHWSIAVKDGKALEKAWRTEIPIPRGGPHR 276 (393)
Q Consensus 197 ~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~d~~~~~~~W~~~~~~p~~~~~~ 276 (393)
..+-.++..|... +..+...+.+-+++-+++++.|.|.. .+++..|++ +...--.+..--... .
T Consensus 340 RTikvW~~st~ef--vRtl~gHkRGIAClQYr~rlvVSGSS-----DntIRlwdi-------~~G~cLRvLeGHEeL--v 403 (499)
T KOG0281|consen 340 RTIKVWSTSTCEF--VRTLNGHKRGIACLQYRDRLVVSGSS-----DNTIRLWDI-------ECGACLRVLEGHEEL--V 403 (499)
T ss_pred ceEEEEeccceee--ehhhhcccccceehhccCeEEEecCC-----CceEEEEec-------cccHHHHHHhchHHh--h
Confidence 3455566555433 33445556667778889999998865 467888886 222221111100111 1
Q ss_pred eEEEECCEEEEEcCCCCC
Q 016201 277 ACFVFNDRLFVVGGQEGD 294 (393)
Q Consensus 277 ~~~~~~~~iyv~GG~~~~ 294 (393)
-++-++++=.|-||+++.
T Consensus 404 RciRFd~krIVSGaYDGk 421 (499)
T KOG0281|consen 404 RCIRFDNKRIVSGAYDGK 421 (499)
T ss_pred hheeecCceeeeccccce
Confidence 356789999999999875
No 191
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=21.78 E-value=4.4e+02 Score=21.41 Aligned_cols=84 Identities=8% Similarity=0.148 Sum_probs=47.3
Q ss_pred EEECCEEEEEecCCCCCCccceEEEEECCCCceEeCCCCCCCCC--cceeEEEEe-CCEEEEEeceeCCCCCCCCCeeEE
Q 016201 125 IQIKNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMA--HSHLGVVSD-GRYIYIVSGQYGPQCRGPTSRTFV 201 (393)
Q Consensus 125 ~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~--r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~ 201 (393)
+.++|.+|=++-...... ...+..||+.+.+.++..++|.... .....+.++ ++++-++--... ...-++|.
T Consensus 2 V~vnG~~hW~~~~~~~~~-~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~----~~~~~IWv 76 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDE-KDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDE----TSKIEIWV 76 (164)
T ss_pred EEECCEEEeeEEecCCCC-ceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccC----CccEEEEE
Confidence 456787777766543332 1258899999999943334444222 234444333 677777732111 11356666
Q ss_pred Ee---CCCCCeEeCC
Q 016201 202 LD---SETRKWDSIP 213 (393)
Q Consensus 202 yd---~~~~~W~~~~ 213 (393)
-+ ....+|+++-
T Consensus 77 m~~~~~~~~SWtK~~ 91 (164)
T PF07734_consen 77 MKKYGYGKESWTKLF 91 (164)
T ss_pred EeeeccCcceEEEEE
Confidence 55 2367898864
No 192
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=21.58 E-value=5e+02 Score=21.91 Aligned_cols=72 Identities=17% Similarity=0.164 Sum_probs=40.3
Q ss_pred CCEEEEEecCCCCCCccceEEEEECCCCceEeCCCCCCCCCcceeEEEEeCCEEEEEeceeCCCCCCCCCeeEEEeCCCC
Q 016201 128 KNLFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYGPQCRGPTSRTFVLDSETR 207 (393)
Q Consensus 128 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 207 (393)
++++.|+-|... ..+..||+..+ .+..++.. .+ ....-.-+|++.+++|.... ..++..||..
T Consensus 71 g~~favi~g~~~-----~~v~lyd~~~~---~i~~~~~~-~~-n~i~wsP~G~~l~~~g~~n~-----~G~l~~wd~~-- 133 (194)
T PF08662_consen 71 GNEFAVIYGSMP-----AKVTLYDVKGK---KIFSFGTQ-PR-NTISWSPDGRFLVLAGFGNL-----NGDLEFWDVR-- 133 (194)
T ss_pred CCEEEEEEccCC-----cccEEEcCccc---EeEeecCC-Cc-eEEEECCCCCEEEEEEccCC-----CcEEEEEECC--
Confidence 456666655321 35888998633 33344432 12 22333357788888886432 2458899988
Q ss_pred CeEeCCCCC
Q 016201 208 KWDSIPPLP 216 (393)
Q Consensus 208 ~W~~~~~~p 216 (393)
+.+.+....
T Consensus 134 ~~~~i~~~~ 142 (194)
T PF08662_consen 134 KKKKISTFE 142 (194)
T ss_pred CCEEeeccc
Confidence 445554433
No 193
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=20.81 E-value=7.2e+02 Score=23.51 Aligned_cols=76 Identities=17% Similarity=-0.002 Sum_probs=43.6
Q ss_pred EEEEEecCCCCCCccceEEEEECCCCceEeCCCCCCCCCcceeEEEEeCCEEEEEeceeC-CCCCCCCCeeEEEeCCCCC
Q 016201 130 LFYVFAGYGSLDYVHSHVDVYNFTDNKWVDRFDMPKDMAHSHLGVVSDGRYIYIVSGQYG-PQCRGPTSRTFVLDSETRK 208 (393)
Q Consensus 130 ~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~v~~yd~~~~~ 208 (393)
.+||.-...... .+.+.++|..+.+- +...+.. .+.+..+.-.+..+|+.-.+.. .........+..||+++.+
T Consensus 14 ~v~V~d~~~~~~--~~~v~ViD~~~~~v--~g~i~~G-~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~ 88 (352)
T TIGR02658 14 RVYVLDPGHFAA--TTQVYTIDGEAGRV--LGMTDGG-FLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL 88 (352)
T ss_pred EEEEECCccccc--CceEEEEECCCCEE--EEEEEcc-CCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCc
Confidence 477764432111 26788899887553 3333332 1323334445678999876422 1222336789999999987
Q ss_pred eE
Q 016201 209 WD 210 (393)
Q Consensus 209 W~ 210 (393)
=.
T Consensus 89 ~~ 90 (352)
T TIGR02658 89 PI 90 (352)
T ss_pred EE
Confidence 54
Done!