BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016202
         (393 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A1JSJ0|GLGB_YERE8 1,4-alpha-glucan branching enzyme GlgB OS=Yersinia enterocolitica
           serotype O:8 / biotype 1B (strain 8081) GN=glgB PE=3
           SV=1
          Length = 727

 Score = 35.0 bits (79), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 15/82 (18%)

Query: 127 RHVDNKMWLGFTDFVERLLEEERSIMESMETDRVNKVRKLLMISKE------KRIPLSKI 180
           RH DN  WL + +  ++L+E     ++ M    V    +LL I++          PL  +
Sbjct: 255 RHTDNNFWLSYGELADQLVE----YVKYMGFTHV----ELLPINEHPFDGSWGYQPLG-L 305

Query: 181 YHNRLLFGIPEDFRDRVAKFPE 202
           Y     FG P+DF+D VAKF E
Sbjct: 306 YAPTRRFGTPQDFKDFVAKFHE 327


>sp|Q84MS3|HAK16_ORYSJ Probable potassium transporter 16 OS=Oryza sativa subsp. japonica
           GN=HAK16 PE=2 SV=1
          Length = 811

 Score = 34.7 bits (78), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 61/147 (41%), Gaps = 23/147 (15%)

Query: 140 FVERLLEEERSIMESMETDRVNKVRKLLMISKEKRIPLSKIYHNRLLFGIPEDFRDRVAK 199
           FV   +  +R   E   T   NKVR+LL     KR+P   +++  L+ GIP  F   + K
Sbjct: 533 FVWHYVHVKRYKFELEHTVSPNKVRELLERRDLKRVPGVGLFYTELVQGIPPIFPHLIEK 592

Query: 200 FPEYFRIVVENDGKRILELVNWDPTLAVSE--LEREFIVNEDKVKKAFKFPVKYGKDLGL 257
            P    ++V    K +       P + VSE  L R+    E K    F+   +YG    L
Sbjct: 593 IPTIHSVIVFISMKHLP-----IPHVDVSERFLFRQV---EPKECMVFRCVARYGYRDTL 644

Query: 258 DESD-------------TRKLNLLNTL 271
           + +D              R LNL NT+
Sbjct: 645 EMADDFVTTLVEYLQYYIRDLNLYNTV 671


>sp|Q1L981|TDRD5_DANRE Tudor domain-containing protein 5 OS=Danio rerio GN=tdrd5 PE=2 SV=1
          Length = 905

 Score = 32.7 bits (73), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 8/76 (10%)

Query: 163 VRKLLMISKEKRIP--LSKIYHNRLLFGIP------EDFRDRVAKFPEYFRIVVENDGKR 214
           VR LL+ SK    P  L + Y + L F +P       +  D V + PE  R+  + DG  
Sbjct: 14  VRSLLVSSKHGLTPEHLRRDYQSMLGFPMPLRLLGFRNVLDMVKEMPEVVRLEYQLDGNI 73

Query: 215 ILELVNWDPTLAVSEL 230
           IL+ +  D T  + EL
Sbjct: 74  ILKAIGDDTTKGIEEL 89


>sp|A7ZC69|IF2_CAMC1 Translation initiation factor IF-2 OS=Campylobacter concisus
           (strain 13826) GN=infB PE=3 SV=1
          Length = 885

 Score = 32.3 bits (72), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 18/86 (20%)

Query: 18  PNFLKTSPFST--SFLVTKIPKRLRKKHKKPDSPRTRPVQPDSARIPHFESILNRDSVFR 75
           PN +KT+  +T  SF    I +R RKKHKKP++ +       S  IP          V+ 
Sbjct: 260 PNAMKTTVNNTINSFGEGGIQRRARKKHKKPENKQNSEAVT-SINIPK------EIRVYE 312

Query: 76  FLTKTKEFLSKQPERVLRLDDAGKLY 101
           F  K    L+KQP  V+     GKL+
Sbjct: 313 FAEK----LNKQPSEVI-----GKLF 329


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.138    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 150,858,105
Number of Sequences: 539616
Number of extensions: 6469945
Number of successful extensions: 17028
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 17022
Number of HSP's gapped (non-prelim): 15
length of query: 393
length of database: 191,569,459
effective HSP length: 119
effective length of query: 274
effective length of database: 127,355,155
effective search space: 34895312470
effective search space used: 34895312470
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)