Query 016202
Match_columns 393
No_of_seqs 138 out of 200
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 09:37:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016202.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016202hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s93_A Tudor domain-containing 55.1 21 0.00071 29.3 5.6 59 67-129 2-71 (102)
2 3rco_A Tudor domain-containing 48.9 32 0.0011 27.8 5.6 46 79-128 17-72 (89)
3 3m66_A Mterf3, mterf domain-co 40.6 9 0.00031 35.5 1.3 29 177-206 42-71 (270)
4 3m66_A Mterf3, mterf domain-co 31.5 23 0.00077 32.7 2.4 26 179-205 79-105 (270)
5 4fp9_B Mterf domain-containing 28.4 9.5 0.00032 37.4 -0.8 21 103-124 87-107 (335)
6 2icg_A LIN2918 protein; hypoth 22.7 75 0.0026 26.8 4.0 43 158-200 5-54 (160)
7 3mva_O Transcription terminati 18.5 29 0.00099 33.4 0.5 93 100-206 57-153 (343)
8 2pag_A Hypothetical protein; n 17.6 94 0.0032 26.1 3.4 46 158-203 3-52 (135)
9 4fp9_B Mterf domain-containing 17.6 64 0.0022 31.5 2.7 20 185-204 54-74 (335)
10 3eco_A MEPR; mutlidrug efflux 15.4 2.8E+02 0.0097 21.6 5.8 71 78-153 34-109 (139)
No 1
>3s93_A Tudor domain-containing protein 5; structural genomics consortium, SGC, transcription; 2.28A {Homo sapiens}
Probab=55.14 E-value=21 Score=29.35 Aligned_cols=59 Identities=19% Similarity=0.305 Sum_probs=41.9
Q ss_pred HHhhccchhhHHH-HHHHHhcCCCCeeehhhhhhhc----------cccCCCCccchhHHhhhCCCceEEEccC
Q 016202 67 ILNRDSVFRFLTK-TKEFLSKQPERVLRLDDAGKLY----------RELGFPRGRKVVKSIQRHPLIFDVYRHV 129 (393)
Q Consensus 67 ~i~r~k~lr~v~~-lk~li~s~P~~~lpl~~l~k~~----------~~Lgl~~~~~v~~FlrkyP~iF~~~~~~ 129 (393)
.+++++-+..|-+ |+.+|.|.++ -++++.|.+-. +.||++ .+.+||+--|+++.+....
T Consensus 2 ~~~~~~~l~~vkk~irslLiS~K~-gvtl~~L~~dYr~~~G~~iP~r~lGy~---sl~~fL~sipdvv~~~~~~ 71 (102)
T 3s93_A 2 MSEQERIQECLRKEIRSLLISTKD-GLSPQELEKEYLLMVGNHLPLRILGYR---STMELVLDMPDVVRVCPGA 71 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSS-CBCHHHHHHHHHHHHSSCCCTGGGTCS---SHHHHHHTCTTTEEEECCG
T ss_pred CccHHHHHHHHHHHHHHhheeCCC-CcCHHHHHHHHHHHcCCcCCchhcCcC---CHHHHHHcCCCeEEEEecC
Confidence 3566666665554 4788888776 55888776533 566775 6899999999999865543
No 2
>3rco_A Tudor domain-containing protein 7; structural genomics, structural genomics consortium, SGC, HL DNA binding protein; 1.80A {Homo sapiens} PDB: 2lh9_A
Probab=48.91 E-value=32 Score=27.76 Aligned_cols=46 Identities=17% Similarity=0.360 Sum_probs=34.8
Q ss_pred HHHHHHhcCCCCeeehhhhhhhc----------cccCCCCccchhHHhhhCCCceEEEcc
Q 016202 79 KTKEFLSKQPERVLRLDDAGKLY----------RELGFPRGRKVVKSIQRHPLIFDVYRH 128 (393)
Q Consensus 79 ~lk~li~s~P~~~lpl~~l~k~~----------~~Lgl~~~~~v~~FlrkyP~iF~~~~~ 128 (393)
-|+.+|.|.+++ ++++.|.+-. ++||++ .+.+||+--|+++.+-..
T Consensus 17 ~iRslL~S~k~g-vtl~~L~~DYr~l~G~~iP~r~lGy~---sl~~fL~siPdvv~~~~~ 72 (89)
T 3rco_A 17 MLRAVLQSHKNG-VALPRLQGEYRSLTGDWIPFKQLGFP---TLEAYLRSVPAVVRIETS 72 (89)
T ss_dssp HHHHHHHTCTTC-EEHHHHHHHHHHHHSSCCCTTTTTCS---SHHHHHHTCTTTEEEEEC
T ss_pred HHHHHhhcCCCC-CCHHHHHHHHHHHhCCcCChhhhCcc---cHHHHHhcccCeEEEEec
Confidence 457788888876 6888776543 567775 689999999999996333
No 3
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=40.65 E-value=9 Score=35.46 Aligned_cols=29 Identities=14% Similarity=0.059 Sum_probs=21.1
Q ss_pred hhhHHhhhhhcCCChhhhhh-hhcCCCCeEE
Q 016202 177 LSKIYHNRLLFGIPEDFRDR-VAKFPEYFRI 206 (393)
Q Consensus 177 L~kl~~lr~dLGLP~DF~~~-v~kyP~~Frv 206 (393)
..+++-+ .++|++.+-... +.++|..|.-
T Consensus 42 ~~~l~fL-~~lG~~~~~i~~il~~~P~lL~~ 71 (270)
T 3m66_A 42 KQMLLFL-KDVGIEDNQLGAFLTKNHAIFSE 71 (270)
T ss_dssp HHHHHHH-HHHTCCGGGHHHHHHHCTTGGGS
T ss_pred HHHHHHH-HHcCCCHHHHHHHHHhCChhhhC
Confidence 3446666 569999987765 6899988755
No 4
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=31.50 E-value=23 Score=32.72 Aligned_cols=26 Identities=12% Similarity=0.011 Sum_probs=18.4
Q ss_pred hHHhhhhhcCCChhhhhh-hhcCCCCeE
Q 016202 179 KIYHNRLLFGIPEDFRDR-VAKFPEYFR 205 (393)
Q Consensus 179 kl~~lr~dLGLP~DF~~~-v~kyP~~Fr 205 (393)
+++-++ ++|++++-... +.++|..+.
T Consensus 79 ~v~~L~-~~Gls~~~i~~~l~~~P~lL~ 105 (270)
T 3m66_A 79 RVAYLH-SKNFSKADVAQMVRKAPFLLN 105 (270)
T ss_dssp HHHHHH-HTTCCHHHHHHHHHHSTTGGG
T ss_pred HHHHHH-HcCCCHHHHHHHHHhCCHHHc
Confidence 455554 68998766554 689998874
No 5
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=28.41 E-value=9.5 Score=37.44 Aligned_cols=21 Identities=19% Similarity=0.404 Sum_probs=11.9
Q ss_pred ccCCCCccchhHHhhhCCCceE
Q 016202 103 ELGFPRGRKVVKSIQRHPLIFD 124 (393)
Q Consensus 103 ~Lgl~~~~~v~~FlrkyP~iF~ 124 (393)
.|||+.. .+.+.|.++|.++.
T Consensus 87 ~LGls~e-~V~kiL~k~P~lL~ 107 (335)
T 4fp9_B 87 LLGLNPE-PVCVVLKKSPQLLK 107 (335)
T ss_dssp HTTCCHH-HHHHHHHHCGGGGG
T ss_pred HcCCCHH-HHHHHHHhChhhcc
Confidence 3566542 56666666666654
No 6
>2icg_A LIN2918 protein; hypothetical protein, structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; 1.65A {Listeria innocua} SCOP: d.369.1.1
Probab=22.73 E-value=75 Score=26.79 Aligned_cols=43 Identities=19% Similarity=0.267 Sum_probs=32.2
Q ss_pred HHHHHHHHHhccC-----CCCccchhhHHhhhhhcC--CChhhhhhhhcC
Q 016202 158 DRVNKVRKLLMIS-----KEKRIPLSKIYHNRLLFG--IPEDFRDRVAKF 200 (393)
Q Consensus 158 ~~V~rLrKLLMMS-----~~rrLpL~kl~~lr~dLG--LP~DF~~~v~ky 200 (393)
...+++++++|.. ....+.-..|..+...|| ||+||+..+.+|
T Consensus 5 ~~~~~i~~~i~~~~~~~~~~~~~s~~~I~~~E~~Lgi~lP~~Yk~fL~~~ 54 (160)
T 2icg_A 5 SFLEEVDRLITLSGITFHASGTGTPELIKIYQDALGNEFPETYKLFLEKY 54 (160)
T ss_dssp HHHHHHHHHHHHCCSCCBCCCCCCHHHHHHHHHHHTCCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcccccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHh
Confidence 5677888888742 335666777888888887 699999987665
No 7
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=18.54 E-value=29 Score=33.38 Aligned_cols=93 Identities=11% Similarity=0.103 Sum_probs=51.9
Q ss_pred hccccCCCCccchhHHhhhCCCceEEEccCCCccceeccHHHHHHHHHHHHHHHhchHHH---HHHHHHHhccCCCCccc
Q 016202 100 LYRELGFPRGRKVVKSIQRHPLIFDVYRHVDNKMWLGFTDFVERLLEEERSIMESMETDR---VNKVRKLLMISKEKRIP 176 (393)
Q Consensus 100 ~~~~Lgl~~~~~v~~FlrkyP~iF~~~~~~~~~~~~rLT~~a~~L~~eE~~v~~~~e~~~---V~rLrKLLMMS~~rrLp 176 (393)
+=+.+|++. ..+.+.+.+||.++..-.. .+.+...-|. . +.-...++ +.+--.+|+-+.+..--
T Consensus 57 fL~~~G~s~-~~i~~iv~~~P~lL~~~~~-------~l~p~l~fL~--~---lG~s~~~i~~il~~~P~iLl~s~~~~~l 123 (343)
T 3mva_O 57 FLLSKGASK-EVIASIISRYPRAITRTPE-------NLSKRWDLWR--K---IVTSDLEIVNILERSPESFFRSNNNLNL 123 (343)
T ss_dssp HHHHTTCCH-HHHHHHHHHCGGGGGCCHH-------HHHHHHHHHT--T---TSSCHHHHHHHHHHCSHHHHSCCCHHHH
T ss_pred HHHHcCCCH-HHHHHHHHhCcHHHhCCHH-------HHHHHHHHHH--H---cCCCHHHHHHHHHHCCHHHhCCChHhhH
Confidence 335889975 4789999999998852211 1111111110 0 01112222 22223345555553222
Q ss_pred hhhHHhhhhhcCCChhhhhh-hhcCCCCeEE
Q 016202 177 LSKIYHNRLLFGIPEDFRDR-VAKFPEYFRI 206 (393)
Q Consensus 177 L~kl~~lr~dLGLP~DF~~~-v~kyP~~Frv 206 (393)
...++-++ ++|++++-... +.++|..|..
T Consensus 124 ~p~v~fL~-~lGl~~~~i~~ll~~~P~il~~ 153 (343)
T 3mva_O 124 ENNIKFLY-SVGLTRKCLCRLLTNAPRTFSN 153 (343)
T ss_dssp HHHHHHHH-HTTCCHHHHHHHHHHCGGGGTS
T ss_pred HHHHHHHH-HhCCCHHHHHHHHHhCChhhee
Confidence 33577776 89999988765 6899999865
No 8
>2pag_A Hypothetical protein; nysgx, target 10412I, novel fold, structural genomics, PSI-2 structure initiative; 1.60A {Pseudomonas syringae PV} SCOP: d.369.1.1
Probab=17.65 E-value=94 Score=26.15 Aligned_cols=46 Identities=9% Similarity=0.042 Sum_probs=33.0
Q ss_pred HHHHHHHHHhccCCC--CccchhhHHhhhhhcC--CChhhhhhhhcCCCC
Q 016202 158 DRVNKVRKLLMISKE--KRIPLSKIYHNRLLFG--IPEDFRDRVAKFPEY 203 (393)
Q Consensus 158 ~~V~rLrKLLMMS~~--rrLpL~kl~~lr~dLG--LP~DF~~~v~kyP~~ 203 (393)
+++++|+.++.-... ....-..|..+...|| ||+||+..+.+|-+.
T Consensus 3 ~~ie~L~~~~~~~~~~~~~~t~e~I~~~E~~Lgi~fP~dYk~fl~~~~~~ 52 (135)
T 2pag_A 3 EVIEQLREANEPVPVPLELPDEDQLVEIEEQLFINIPFVFKEFLLTVSDV 52 (135)
T ss_dssp HHHHHHHHHCCCCSSCCCCCCHHHHHHHHHHHTCCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCc
Confidence 678888887755432 2335667888888888 799999987766443
No 9
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=17.63 E-value=64 Score=31.48 Aligned_cols=20 Identities=10% Similarity=0.029 Sum_probs=15.7
Q ss_pred hhcCCChhhhhh-hhcCCCCe
Q 016202 185 LLFGIPEDFRDR-VAKFPEYF 204 (393)
Q Consensus 185 ~dLGLP~DF~~~-v~kyP~~F 204 (393)
.++|+.++.... +..+|..+
T Consensus 54 ~d~Gfs~~~i~~il~~~P~il 74 (335)
T 4fp9_B 54 LDMGFSNAHINELLSVRRGAS 74 (335)
T ss_dssp HHTTCCHHHHHHHHHHCSSCC
T ss_pred HHCCCCHHHHHHHHHhCcccc
Confidence 378999988775 68899764
No 10
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=15.44 E-value=2.8e+02 Score=21.61 Aligned_cols=71 Identities=23% Similarity=0.251 Sum_probs=42.5
Q ss_pred HHHHHHHhcCCCCeeehhhhhhhccccCCCCccchhHHh---hhCCCceEEEcc--CCCccceeccHHHHHHHHHHHHHH
Q 016202 78 TKTKEFLSKQPERVLRLDDAGKLYRELGFPRGRKVVKSI---QRHPLIFDVYRH--VDNKMWLGFTDFVERLLEEERSIM 152 (393)
Q Consensus 78 ~~lk~li~s~P~~~lpl~~l~k~~~~Lgl~~~~~v~~Fl---rkyP~iF~~~~~--~~~~~~~rLT~~a~~L~~eE~~v~ 152 (393)
..+-..|...|+..+++.+ +.+.+|++.+ .+.+.| .+---| +...+ ....-++.||++|.+++.+-...+
T Consensus 34 ~~vL~~l~~~~~~~~t~~e---la~~l~~~~~-tvs~~l~~Le~~Gli-~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~ 108 (139)
T 3eco_A 34 GHTLGYLYAHQQDGLTQND---IAKALQRTGP-TVSNLLRNLERKKLI-YRYVDAQDTRRKNIGLTTSGIKLVEAFTSIF 108 (139)
T ss_dssp HHHHHHHHHSTTTCEEHHH---HHHHHTCCHH-HHHHHHHHHHHTTSE-EEEECCC--CCEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcCHHH---HHHHhCCCcc-cHHHHHHHHHHCCCE-eecCCCCCCCeeeeEECHHHHHHHHHHHHHH
Confidence 4455666667755677765 5667888753 455443 333333 32222 234567999999999988755544
Q ss_pred H
Q 016202 153 E 153 (393)
Q Consensus 153 ~ 153 (393)
.
T Consensus 109 ~ 109 (139)
T 3eco_A 109 D 109 (139)
T ss_dssp H
T ss_pred H
Confidence 4
Done!