BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016203
(393 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C7B1|TRP3_ARATH Telomere repeat-binding protein 3 OS=Arabidopsis thaliana GN=TRP3
PE=1 SV=1
Length = 619
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 70/124 (56%), Gaps = 6/124 (4%)
Query: 273 DESCSHQSNVPKS-SLMERNSTAHAYEWDDSIDEEPSNQGNRFHLPSPKRKAVS--PLKN 329
D H +V S ++++ N Y+ D S+DE S+ LP + KA++ PL
Sbjct: 437 DSGIPHADDVIDSRNIVDSNLELVPYQGDISVDEPSSDSKELVPLPELEVKALAIVPLNQ 496
Query: 330 H-DVTKLARRRKKKKWSLEEEDALRKGVEQFGKGNWKLI-LKSNPGAFDERTEVDLKDKW 387
T+LA+RR ++ +S+ E +AL + VE+ G G W+ + L++ A D RT VDLKDKW
Sbjct: 497 KPKRTELAQRRTRRPFSVTEVEALVQAVEELGTGRWRDVKLRAFEDA-DHRTYVDLKDKW 555
Query: 388 RNVM 391
+ ++
Sbjct: 556 KTLV 559
>sp|Q15554|TERF2_HUMAN Telomeric repeat-binding factor 2 OS=Homo sapiens GN=TERF2 PE=1
SV=2
Length = 500
Score = 55.1 bits (131), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 340 KKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392
KK+KW++EE + ++ GV+++G+GNW I K+ P F RT V +KD+WR + R
Sbjct: 446 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYP--FVNRTAVMIKDRWRTMKR 496
>sp|Q8VWK4|TRB1_ARATH Telomere repeat-binding factor 1 OS=Arabidopsis thaliana GN=TRB1
PE=1 SV=1
Length = 300
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 341 KKKWSLEEEDALRKGVEQFGKGNWKLILK--SNPGAFDERTEVDLKDKWRNV 390
K+KW+ EEE AL+ GV + G G W+ ILK G R+ VDLKDKWRN+
Sbjct: 5 KQKWTQEEESALKSGVIKHGPGKWRTILKDPEFSGVLYLRSNVDLKDKWRNM 56
>sp|O55036|TERF1_CRIGR Telomeric repeat-binding factor 1 (Fragment) OS=Cricetulus griseus
GN=TERF1 PE=2 SV=1
Length = 438
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 9/75 (12%)
Query: 316 LPSPKRKAVSPLKNHDVTKLARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAF 375
+P K + V+P K+ R RK++ W EE+ LR GV ++G+GNW IL F
Sbjct: 362 IPVSKSQPVTPEKH-------RARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYK--F 412
Query: 376 DERTEVDLKDKWRNV 390
+ RT V LKD+WR +
Sbjct: 413 NNRTSVMLKDRWRTM 427
>sp|P54274|TERF1_HUMAN Telomeric repeat-binding factor 1 OS=Homo sapiens GN=TERF1 PE=1
SV=3
Length = 439
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 9/75 (12%)
Query: 316 LPSPKRKAVSPLKNHDVTKLARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAF 375
+P K + V+P K+ R RK++ W EE+ LR GV ++G+GNW IL F
Sbjct: 362 IPVSKSQPVTPEKH-------RARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYK--F 412
Query: 376 DERTEVDLKDKWRNV 390
+ RT V LKD+WR +
Sbjct: 413 NNRTSVMLKDRWRTM 427
>sp|O35144|TERF2_MOUSE Telomeric repeat-binding factor 2 OS=Mus musculus GN=Terf2 PE=1
SV=3
Length = 541
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 36/51 (70%), Gaps = 2/51 (3%)
Query: 340 KKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNV 390
+K+KW++EE + ++ GV ++G+GNW I KS P F RT V +KD+WR +
Sbjct: 487 RKQKWTIEESEWVKDGVRKYGEGNWAAISKSYP--FVNRTAVMIKDRWRTM 535
>sp|P70371|TERF1_MOUSE Telomeric repeat-binding factor 1 OS=Mus musculus GN=Terf1 PE=1
SV=1
Length = 421
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Query: 338 RRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392
RRK++ W EE+ L+ GV+++G+GNW IL F+ RT V LKD+WR + R
Sbjct: 364 RRKRQTWLWEEDRILKCGVKKYGEGNWAKILSHYK--FNNRTSVMLKDRWRTMKR 416
>sp|Q9M2X3|TRB3_ARATH Telomere repeat-binding factor 3 OS=Arabidopsis thaliana GN=TRB3
PE=1 SV=1
Length = 295
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 34/53 (64%), Gaps = 4/53 (7%)
Query: 341 KKKWSLEEEDALRKGVEQFGKGNWKLILKSNP---GAFDERTEVDLKDKWRNV 390
K KW+ EEE AL+ GV + G G W+ IL S+P R+ VDLKDKWRN+
Sbjct: 5 KLKWTPEEETALKAGVLKHGTGKWRTIL-SDPVYSTILKSRSNVDLKDKWRNI 56
>sp|F4I7L1|TRB4_ARATH Telomere repeat-binding factor 4 OS=Arabidopsis thaliana
GN=At1g17520 PE=2 SV=2
Length = 296
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 340 KKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGA--FDERTEVDLKDKWRNV 390
+K KW+ EEE+AL GV + G G WK IL+ A R+ +DLKDKWRN+
Sbjct: 4 QKLKWTAEEEEALLAGVRKHGPGKWKNILRDPELAEQLSSRSNIDLKDKWRNL 56
>sp|F4IEY4|TRB5_ARATH Telomere repeat-binding factor 5 OS=Arabidopsis thaliana
GN=At1g72740 PE=2 SV=1
Length = 287
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 4/54 (7%)
Query: 340 KKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDE---RTEVDLKDKWRNV 390
+K KW+ EEE+AL G+ + G G WK IL+ +P D+ R+ +DLKDKWRN+
Sbjct: 4 QKLKWTAEEEEALLAGIRKHGPGKWKNILR-DPEFADQLIHRSNIDLKDKWRNL 56
>sp|Q9FJW5|TRB2_ARATH Telomere repeat-binding factor 2 OS=Arabidopsis thaliana GN=TRB2
PE=1 SV=1
Length = 299
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 341 KKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGA--FDERTEVDLKDKWRNV 390
K+KW+ EEE AL+ GV + G G W+ IL + R+ VDLKDKWRN+
Sbjct: 5 KQKWTPEEEAALKAGVLKHGTGKWRTILSDTEFSLILKSRSNVDLKDKWRNI 56
>sp|Q9PU53|TERF2_CHICK Telomeric repeat-binding factor 2 OS=Gallus gallus GN=TERF2 PE=1
SV=2
Length = 718
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Query: 340 KKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNV 390
KK+KW+++E + ++ GV ++G+G WK I + P F RT V +KD++R +
Sbjct: 664 KKQKWTVQESEWIKDGVRKYGEGRWKTISEKYP--FQNRTSVQIKDRYRTM 712
>sp|Q9FFY9|TRP4_ARATH Telomere repeat-binding protein 4 OS=Arabidopsis thaliana GN=TRP4
PE=1 SV=1
Length = 640
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 333 TKLARRRKKKKWSLEEEDALRKGVEQFGKGNWKLI-LKSNPGAFDERTEVDLKDKWRNVM 391
T+L++RR ++ +S+ E +AL VE+ G G W+ + L+S A RT VDLKDKW+ ++
Sbjct: 527 TELSQRRTRRPFSVTEVEALVSAVEEVGTGRWRDVKLRSFENA-SHRTYVDLKDKWKTLV 585
>sp|Q9LL45|TBP1_ORYSJ Telomere-binding protein 1 OS=Oryza sativa subsp. japonica GN=TBP1
PE=1 SV=2
Length = 633
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 47/111 (42%)
Query: 281 NVPKSSLMERNSTAHAYEWDDSIDEEPSNQGNRFHLPSPKRKAVSPLKNHDVTKLARRRK 340
+ P SL + S + EW S F P+ A PL +RR
Sbjct: 474 DFPGCSLSDPGSVDYPVEWSTQETSASSQAIVPFADPNSLALANVPLSRSKRPDFGQRRI 533
Query: 341 KKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVM 391
++ +++ E + L + VE G G W+ + RT VDLKDKW+ ++
Sbjct: 534 RRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLV 584
>sp|Q9SNB9|TRP2_ARATH Telomere repeat-binding protein 2 OS=Arabidopsis thaliana GN=TRP2
PE=1 SV=1
Length = 553
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%)
Query: 336 ARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVM 391
A+RR ++ +S+ E +AL + VE+ G G W+ + D RT VDLKDKW+ ++
Sbjct: 448 AQRRIRRPFSVTEVEALVQAVEKLGTGRWRDVKVRAFEDADHRTYVDLKDKWKTLV 503
>sp|Q6R0E3|TRP5_ARATH Telomere repeat-binding protein 5 OS=Arabidopsis thaliana GN=TRP5
PE=1 SV=2
Length = 630
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 8/73 (10%)
Query: 323 AVSPLKNHDVTKLARRRKKKKWSLEEEDALRKGVEQFGKGNWKLI-LKSNPGAFD---ER 378
V P + +++A+RR ++ +S+ E +AL + VE+ G G W+ + L+ AFD R
Sbjct: 510 TVVPPRKTKRSEVAQRRIRRPFSVAEVEALVQAVERLGTGRWRDVKLR----AFDNAKHR 565
Query: 379 TEVDLKDKWRNVM 391
T VDLKDKW+ ++
Sbjct: 566 TYVDLKDKWKTLV 578
>sp|Q9S7G7|MB3R1_ARATH Myb-related protein 3R-1 OS=Arabidopsis thaliana GN=MYB3R-1 PE=2
SV=1
Length = 776
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 336 ARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVM 391
ARR K +W+ EE++ L K VE+F NWK I + F +RT+V +W+ V+
Sbjct: 30 ARRSTKGQWTPEEDEVLCKAVERFQGKNWKKIAE----CFKDRTDVQCLHRWQKVL 81
>sp|Q9M347|TRP6_ARATH Telomere repeat-binding protein 6 OS=Arabidopsis thaliana GN=TRP6
PE=1 SV=1
Length = 400
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 36/58 (62%)
Query: 334 KLARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVM 391
++ +RR ++ +++ E +AL + VE+ G G W+ + + RT VDLKDKW+ ++
Sbjct: 308 EMVQRRIRRPFTVSEVEALVQAVERLGTGRWRDVKSHAFNHVNHRTYVDLKDKWKTLV 365
>sp|Q10274|MU152_SCHPO Meiotically up-regulated gene 152 protein OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mug152 PE=1 SV=1
Length = 390
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 338 RRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVM 391
R+ + KW+ +E + L +G + G GNWK IL F R+ DLKD++R ++
Sbjct: 52 RKPRVKWTEKETNDLLRGCQIHGVGNWKKILLDERFHFTNRSPNDLKDRFRTIL 105
>sp|Q8L7L8|TRP1_ARATH Telomere repeat-binding protein 1 OS=Arabidopsis thaliana GN=TRP1
PE=1 SV=2
Length = 578
Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 344 WSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVM 391
+S+ E +AL + VE+ G G W+ + D RT VDLKDKW+ ++
Sbjct: 471 FSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLV 518
>sp|P10242|MYB_HUMAN Transcriptional activator Myb OS=Homo sapiens GN=MYB PE=1 SV=2
Length = 640
Score = 40.8 bits (94), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 337 RRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVM 391
R K +W+ EE++ L+K VEQ G +WK+I P RT+V + +W+ V+
Sbjct: 36 RHLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN----RTDVQCQHRWQKVL 86
>sp|P46200|MYB_BOVIN Transcriptional activator Myb OS=Bos taurus GN=MYB PE=2 SV=1
Length = 640
Score = 40.8 bits (94), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 337 RRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVM 391
R K +W+ EE++ L+K VEQ G +WK+I P RT+V + +W+ V+
Sbjct: 36 RHLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN----RTDVQCQHRWQKVL 86
>sp|P06876|MYB_MOUSE Transcriptional activator Myb OS=Mus musculus GN=Myb PE=1 SV=2
Length = 636
Score = 40.8 bits (94), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 337 RRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVM 391
R K +W+ EE++ L+K VEQ G +WK+I P RT+V + +W+ V+
Sbjct: 36 RHLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN----RTDVQCQHRWQKVL 86
>sp|Q08759|MYB_XENLA Transcriptional activator Myb OS=Xenopus laevis GN=myb PE=2 SV=1
Length = 624
Score = 40.4 bits (93), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 332 VTKLARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVM 391
++K R K +W+ EE++ L+K VEQ G WK+I P RT+V + +W+ V+
Sbjct: 28 LSKGKRHLGKTRWTREEDEKLKKLVEQNGTEEWKVIASFLPN----RTDVQCQHRWQKVL 83
>sp|Q54NA6|MYBL_DICDI Myb-like protein L OS=Dictyostelium discoideum GN=mybL PE=3 SV=1
Length = 855
Score = 40.0 bits (92), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 340 KKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVM 391
KK +WS EE+ L V +GKGNW LI G RT+V ++++ NV+
Sbjct: 651 KKGRWSPEEDQCLINAVNAYGKGNWILIKNHVKG----RTDVQCRERYCNVL 698
>sp|P01103|MYB_CHICK Transcriptional activator Myb OS=Gallus gallus GN=MYB PE=2 SV=1
Length = 641
Score = 40.0 bits (92), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 9/70 (12%)
Query: 327 LKNHDVTKL-----ARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEV 381
+ +HD L R K +W+ EE++ L+K VEQ G +WK+I P RT+V
Sbjct: 21 MYDHDYDGLLPKAGKRHLGKTRWTREEDEKLKKLVEQNGTEDWKVIASFLPN----RTDV 76
Query: 382 DLKDKWRNVM 391
+ +W+ V+
Sbjct: 77 QCQHRWQKVL 86
>sp|P48972|MYBB_MOUSE Myb-related protein B OS=Mus musculus GN=Mybl2 PE=1 SV=1
Length = 704
Score = 38.9 bits (89), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 339 RKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVM 391
R K KW+ EE++ LR V QFG+ +WK + F RT+ + +W V+
Sbjct: 29 RCKVKWTHEEDEQLRALVRQFGQQDWKFLA----SHFPNRTDQQCQYRWLRVL 77
>sp|Q02457|TBF1_YEAST Protein TBF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=TBF1 PE=1 SV=2
Length = 562
Score = 38.9 bits (89), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 335 LARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGA-----FDERTEVDLKDKWRN 389
L + + K+ WS EEE+AL +G+++ G K++ PG RT+V LKDK RN
Sbjct: 403 LRKPKAKRTWSKEEEEALVEGLKEVGPSWSKILDLYGPGGKITENLKNRTQVQLKDKARN 462
>sp|P10244|MYBB_HUMAN Myb-related protein B OS=Homo sapiens GN=MYBL2 PE=1 SV=1
Length = 700
Score = 38.1 bits (87), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 331 DVTKLARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNV 390
DV + + K KW+ EE++ LR V QFG+ +WK + F RT+ + +W V
Sbjct: 21 DVPEQRDSKCKVKWTHEEDEQLRALVRQFGQQDWKFLA----SHFPNRTDQQCQYRWLRV 76
Query: 391 M 391
+
Sbjct: 77 L 77
>sp|P52551|MYBB_XENLA Myb-related protein B OS=Xenopus laevis GN=mybl2 PE=2 SV=2
Length = 743
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 331 DVTKLARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNV 390
DV + R K KW+ EE++ L+ V++ G+G WK I + + RTE + +W V
Sbjct: 21 DVPEPKENRVKVKWTPEEDETLKALVKKHGQGEWKTIASN----LNNRTEQQCQHRWLRV 76
Query: 391 MR 392
+
Sbjct: 77 LH 78
>sp|Q9FDW1|MYB44_ARATH Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2
SV=1
Length = 305
Score = 37.4 bits (85), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 339 RKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRN 389
R K WS EE++ LR+ V ++G NW +I KS PG R+ + +W N
Sbjct: 4 RIKGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPG----RSGKSCRLRWCN 50
>sp|Q1LX29|CCD79_DANRE Coiled-coil domain-containing protein 79 OS=Danio rerio GN=ccdc79
PE=2 SV=2
Length = 814
Score = 36.2 bits (82), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 336 ARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392
R RK++ WS +E L KGV++FG +W IL P RT VDL K+ ++ +
Sbjct: 746 GRHRKRQNWSDKELCYLTKGVKRFGH-SWNTILWKYP-FHPGRTNVDLAKKFYHMQK 800
>sp|P51960|MYBA_MOUSE Myb-related protein A OS=Mus musculus GN=Mybl1 PE=2 SV=2
Length = 751
Score = 35.4 bits (80), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 343 KWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVM 391
KW+ +E+D L+K VEQ G +W LI R++ + +W+ V+
Sbjct: 37 KWTRDEDDKLKKLVEQHGTDDWTLIA----SHLQNRSDFQCQHRWQKVL 81
>sp|Q9UUI6|RTF_SCHPO Replication termination factor 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rtf1 PE=1 SV=2
Length = 466
Score = 35.4 bits (80), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 339 RKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392
+KK KW++E+E L+K VE+ G W LI G R + +D WR+ ++
Sbjct: 254 KKKCKWTIEDEAELKKLVEKHGTS-WSLI-----GKLSNRLPMHCRDHWRDYIQ 301
>sp|P10243|MYBA_HUMAN Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=1 SV=2
Length = 752
Score = 35.0 bits (79), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 343 KWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVM 391
KW+ +E+D L+K VEQ G +W LI R++ + +W+ V+
Sbjct: 37 KWTRDEDDKLKKLVEQHGTDDWTLIA----SHLQNRSDFQCQHRWQKVL 81
>sp|Q6E434|TRF1_SCHPO Telomeric DNA-binding factor trf1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=trf1 PE=1 SV=1
Length = 485
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 327 LKNHDVTKLARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILK-SNPGA-----FDERTE 380
L N ++A RR W+ EEE+AL G++ W IL+ PG R +
Sbjct: 394 LNNKRTRRVANRRS---WTKEEEEALLDGLDLVKGPRWSQILELYGPGGKKSEVLKYRNQ 450
Query: 381 VDLKDKWRNV 390
V LKDK RN+
Sbjct: 451 VQLKDKARNM 460
>sp|Q1H1K2|GLGB_METFK 1,4-alpha-glucan branching enzyme GlgB OS=Methylobacillus
flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=glgB
PE=3 SV=1
Length = 725
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 239 EPSVGRETNVDKPVLNPSVDAHLEPLQANQG-NRKDESCSH-QSNVPKSSLMERNSTAHA 296
E + GRE NV N S+D HL L +QG R SH VP +L E + AH
Sbjct: 572 ELAQGREWNV-----NSSLDWHLLDLHWHQGIQRLHRDLSHLYRQVP--ALHELDFDAHG 624
Query: 297 YEWDDSIDEEPS 308
+EW D D + S
Sbjct: 625 FEWIDCSDSDQS 636
>sp|Q6A332|ALY3_ARATH Protein ALWAYS EARLY 3 OS=Arabidopsis thaliana GN=ALY3 PE=1 SV=1
Length = 1132
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Query: 319 PKRKAVSPLKNHDVTKLARRRKKK-------KWSLEEEDALRKGVEQFGKGNWKLI 367
P+ KAVSP K+ + ++RK+K +WS EE + +G +FGK WK +
Sbjct: 15 PRAKAVSPHKDEESMSKTKQRKRKLSDMLGPQWSKEELERFYEGYRKFGK-EWKKV 69
>sp|Q8SRR2|RIR2_ENCCU Ribonucleoside-diphosphate reductase small chain OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU06_0730 PE=3 SV=1
Length = 325
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 317 PSPKRKAVSPLKNHDVTKLARRRKKKKWSLEEEDALRKGVEQFGKGN 363
P +R + P+K HD+ K+ ++ + W++EE +L K ++ +GK N
Sbjct: 13 PKEERFVLLPIKYHDIWKMYKKAESSFWTVEEV-SLDKDIDDWGKLN 58
>sp|Q54Z40|MYBH_DICDI Myb-like protein H OS=Dictyostelium discoideum GN=mybH PE=3 SV=1
Length = 1217
Score = 34.3 bits (77), Expect = 1.8, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 344 WSLEEEDALRKGVEQFGKGNWKLI 367
WS EE + K +E++G+GNWKLI
Sbjct: 232 WSNEEHELFLKAIEKYGRGNWKLI 255
>sp|Q7Z3B3|KANL1_HUMAN KAT8 regulatory NSL complex subunit 1 OS=Homo sapiens GN=KANSL1
PE=1 SV=2
Length = 1105
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 47 RSIQSQLSSDGDASLSKTILENLKAVRDLDEKEGIAITRSMEAAIRDAAENTQNDDALRQ 106
R IQ QL + +LSK L NL+++R + + +TR EAA+R AA T + L
Sbjct: 315 RHIQHQLGGFLEKTLSK--LPNLESLR---PRSQLMLTRKAEAALRKAASETTTSEGLSN 369
Query: 107 VVKT 110
+K+
Sbjct: 370 FLKS 373
>sp|Q03237|MYBB_CHICK Myb-related protein B OS=Gallus gallus GN=MYBL2 PE=1 SV=1
Length = 686
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 331 DVTKLARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNV 390
DV + R K KW+ EE++ L+ V +G+ +WK + P D++ + +W V
Sbjct: 21 DVPEQRDGRCKVKWTQEEDEQLKMLVRHYGQNDWKFLASHFPNRSDQQCQY----RWLRV 76
Query: 391 M 391
+
Sbjct: 77 L 77
>sp|P36603|RIR2_SCHPO Ribonucleoside-diphosphate reductase small chain
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=suc22 PE=3 SV=2
Length = 391
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 13/63 (20%)
Query: 301 DSIDEEPSNQGNRFHL-------------PSPKRKAVSPLKNHDVTKLARRRKKKKWSLE 347
D++ EE +G ++L P+P R + P+K H++ + ++ + W+ E
Sbjct: 42 DNVSEEEKQEGGDYYLGKKEDELDEVVLRPNPHRFVLFPIKYHEIWQFYKKAEASFWTAE 101
Query: 348 EED 350
E D
Sbjct: 102 EID 104
>sp|Q4KLN6|RIR2_RAT Ribonucleoside-diphosphate reductase subunit M2 OS=Rattus
norvegicus GN=Rrm2 PE=2 SV=1
Length = 390
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 302 SIDEEPSNQGNRFHLPSPKRKAVSPLKNHDVTKLARRRKKKKWSLEEED 350
SI+EEP + N P+R V P++ HD+ ++ ++ + W+ EE D
Sbjct: 67 SIEEEPLLREN------PRRFVVFPIEYHDIWQMYKKAEASFWTAEEVD 109
>sp|Q8I8V0|TAD2B_DROME Transcriptional adapter 2B OS=Drosophila melanogaster GN=Ada2b PE=1
SV=1
Length = 555
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 335 LARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRN 389
L+ R K W+ EE L +EQ+G GNW+ I K + ++ D K+++ N
Sbjct: 65 LSVFRGKGAWTAREEIRLLDAIEQYGFGNWEDISKH----IETKSAEDAKEEYVN 115
>sp|P13864|DNMT1_MOUSE DNA (cytosine-5)-methyltransferase 1 OS=Mus musculus GN=Dnmt1 PE=1
SV=5
Length = 1620
Score = 33.1 bits (74), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 15/107 (14%)
Query: 5 ISRWVIEFLLRNSP---SDQLINRILAIIPISNNNNFRLKKTLLLRSIQSQLSSDGDASL 61
IS+ V+EFL +N+P + LIN+I +P S N R + LLR Q +S
Sbjct: 514 ISKIVVEFL-QNNPDAVYEDLINKIETTVPPSTINVNRFTEDSLLRHAQFVVSQ------ 566
Query: 62 SKTILENLKAVRDLDEKEGIAITRSMEAAIRDAAENTQNDDALRQVV 108
+E+ +D DE I ++ M A I A + A R+V+
Sbjct: 567 ----VESYDEAKDDDETP-IFLSPCMRALIHLAGVSLGQRRATRRVM 608
>sp|Q60561|RIR2_MESAU Ribonucleoside-diphosphate reductase subunit M2 OS=Mesocricetus
auratus GN=RRM2 PE=2 SV=1
Length = 386
Score = 33.1 bits (74), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 302 SIDEEPSNQGNRFHLPSPKRKAVSPLKNHDVTKLARRRKKKKWSLEEED 350
S+++EP + N P+R V P++ HD+ K+ ++ + W+ EE D
Sbjct: 67 SVEDEPLLREN------PRRFVVFPIEYHDIWKMYKKAEASFWTAEEVD 109
>sp|Q9P6H9|REB1_SCHPO DNA-binding protein reb1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=reb1 PE=3 SV=1
Length = 504
Score = 32.7 bits (73), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 17/73 (23%)
Query: 321 RKAVSPLKNHDVTKLARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTE 380
R+A +P ++ V WS EE++ LRK V + GK W I G R
Sbjct: 304 RRAYNPFEDRCV-----------WSKEEDEELRKNVVEHGKC-WTKI-----GRKMARMP 346
Query: 381 VDLKDKWRNVMRY 393
D +D+WR+V+R+
Sbjct: 347 NDCRDRWRDVVRF 359
>sp|P26358|DNMT1_HUMAN DNA (cytosine-5)-methyltransferase 1 OS=Homo sapiens GN=DNMT1 PE=1
SV=2
Length = 1616
Score = 32.7 bits (73), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 5 ISRWVIEFLLRNSPS--DQLINRILAIIPISNNNNFRLKKTLLLRSIQ---SQLSS---D 56
IS+ V+EFL NS S + LIN+I +P S N R + LLR Q Q+ S
Sbjct: 508 ISKIVVEFLQSNSDSTYEDLINKIETTVPPSGLNLNRFTEDSLLRHAQFVVEQVESYDEA 567
Query: 57 GDASLSKTILENLKAVRDLDEKEGIAI 83
GD+ L +RDL + G+ +
Sbjct: 568 GDSDEQPIFL--TPCMRDLIKLAGVTL 592
>sp|P81392|MYB06_ANTMA Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1
Length = 316
Score = 32.3 bits (72), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 340 KKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392
KK W+ EE+ L +++ G GNW+ I SN G R + +W N +R
Sbjct: 13 KKGPWTPEEDIILVSYIQEHGPGNWRAI-PSNTGLL--RCSKSCRLRWTNYLR 62
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.128 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 150,539,595
Number of Sequences: 539616
Number of extensions: 6564524
Number of successful extensions: 16376
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 100
Number of HSP's that attempted gapping in prelim test: 16219
Number of HSP's gapped (non-prelim): 226
length of query: 393
length of database: 191,569,459
effective HSP length: 119
effective length of query: 274
effective length of database: 127,355,155
effective search space: 34895312470
effective search space used: 34895312470
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)