Query 016203
Match_columns 393
No_of_seqs 189 out of 830
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 04:44:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016203.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016203hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00249 Myb_DNA-binding: Myb- 99.4 6.1E-13 1.3E-17 97.2 4.2 47 341-391 1-48 (48)
2 PLN03212 Transcription repress 99.2 2.8E-11 6E-16 116.6 6.6 64 317-392 9-73 (249)
3 smart00717 SANT SANT SWI3, AD 99.1 2.1E-10 4.6E-15 80.4 5.8 48 341-392 1-48 (49)
4 KOG0049 Transcription factor, 99.0 1.1E-10 2.3E-15 124.0 4.3 83 275-393 325-408 (939)
5 PF13921 Myb_DNA-bind_6: Myb-l 99.0 6.9E-10 1.5E-14 83.8 5.1 43 344-391 1-43 (60)
6 cd00167 SANT 'SWI3, ADA2, N-Co 99.0 1.2E-09 2.7E-14 75.6 5.5 45 343-391 1-45 (45)
7 PLN03091 hypothetical protein; 99.0 6.3E-10 1.4E-14 114.5 5.4 52 337-392 10-62 (459)
8 PLN03212 Transcription repress 98.9 9.7E-10 2.1E-14 106.1 3.8 68 319-392 57-124 (249)
9 PLN03091 hypothetical protein; 98.8 4.4E-09 9.5E-14 108.4 4.6 68 319-392 46-113 (459)
10 KOG0048 Transcription factor, 98.5 2E-07 4.4E-12 89.0 5.6 53 335-392 56-108 (238)
11 TIGR01557 myb_SHAQKYF myb-like 98.1 7.3E-06 1.6E-10 63.1 6.1 49 339-390 1-53 (57)
12 KOG0049 Transcription factor, 97.7 7.2E-06 1.6E-10 88.1 0.3 89 297-390 361-457 (939)
13 KOG0457 Histone acetyltransfer 97.5 8.1E-05 1.8E-09 77.1 4.7 49 339-391 70-118 (438)
14 KOG0051 RNA polymerase I termi 97.5 9.4E-05 2E-09 79.5 4.1 47 340-392 383-429 (607)
15 KOG0048 Transcription factor, 97.4 0.0001 2.2E-09 70.7 3.3 34 339-372 7-40 (238)
16 PF13837 Myb_DNA-bind_4: Myb/S 97.1 0.00029 6.2E-09 56.5 1.9 52 341-392 1-65 (90)
17 PF13325 MCRS_N: N-terminal re 96.6 0.0017 3.7E-08 61.7 3.8 57 337-393 69-128 (199)
18 COG5147 REB1 Myb superfamily p 96.6 0.001 2.2E-08 70.8 2.0 52 336-391 15-66 (512)
19 PF13873 Myb_DNA-bind_5: Myb/S 96.5 0.0051 1.1E-07 48.7 5.2 52 341-392 2-70 (78)
20 KOG1279 Chromatin remodeling f 95.8 0.012 2.5E-07 62.8 5.0 49 337-390 249-297 (506)
21 PF08914 Myb_DNA-bind_2: Rap1 95.5 0.021 4.7E-07 45.2 4.2 49 341-392 2-58 (65)
22 COG5259 RSC8 RSC chromatin rem 95.2 0.02 4.4E-07 60.4 4.2 46 340-390 278-323 (531)
23 COG5147 REB1 Myb superfamily p 95.0 0.025 5.5E-07 60.4 4.5 52 335-391 66-117 (512)
24 COG5114 Histone acetyltransfer 95.0 0.022 4.8E-07 57.8 3.7 47 341-391 63-109 (432)
25 KOG0051 RNA polymerase I termi 93.3 0.089 1.9E-06 57.2 4.3 49 339-391 434-507 (607)
26 KOG0050 mRNA splicing protein 93.1 0.06 1.3E-06 57.5 2.6 49 337-391 55-103 (617)
27 PF09111 SLIDE: SLIDE; InterP 92.9 0.19 4E-06 44.2 5.0 54 339-392 47-111 (118)
28 KOG4282 Transcription factor G 92.7 0.13 2.8E-06 51.6 4.2 53 341-393 54-115 (345)
29 KOG2656 DNA methyltransferase 87.7 0.46 1E-05 49.5 3.2 51 341-392 130-182 (445)
30 PLN03142 Probable chromatin-re 87.7 0.64 1.4E-05 53.8 4.7 54 339-392 924-985 (1033)
31 PF12776 Myb_DNA-bind_3: Myb/S 87.3 0.76 1.6E-05 37.2 3.7 50 343-392 1-63 (96)
32 COG5118 BDP1 Transcription ini 85.0 1.5 3.1E-05 45.9 5.1 51 335-390 359-409 (507)
33 PRK13923 putative spore coat p 79.9 0.88 1.9E-05 42.6 1.3 52 340-392 4-57 (170)
34 TIGR02894 DNA_bind_RsfA transc 76.2 1.4 3.1E-05 40.9 1.5 48 340-392 3-56 (161)
35 PF09420 Nop16: Ribosome bioge 60.8 23 0.00051 32.3 6.0 52 339-391 112-163 (164)
36 KOG0384 Chromodomain-helicase 55.6 6.6 0.00014 46.5 1.8 31 340-370 1132-1162(1373)
37 PF13921 Myb_DNA-bind_6: Myb-l 50.9 13 0.00028 27.7 2.2 31 321-352 30-60 (60)
38 PF04504 DUF573: Protein of un 49.3 33 0.00071 29.1 4.6 52 340-391 3-62 (98)
39 KOG4468 Polycomb-group transcr 44.3 1.1E+02 0.0024 34.3 8.6 27 340-367 87-113 (782)
40 KOG2009 Transcription initiati 43.8 29 0.00064 38.2 4.4 49 336-389 404-452 (584)
41 PF03540 TFIID_30kDa: Transcri 43.2 43 0.00094 25.7 4.0 30 16-46 1-30 (51)
42 smart00595 MADF subfamily of S 42.5 19 0.00041 28.7 2.1 24 363-391 29-52 (89)
43 PF11626 Rap1_C: TRF2-interact 37.7 30 0.00064 28.4 2.6 21 340-360 46-74 (87)
44 KOG4329 DNA-binding protein [G 35.5 60 0.0013 34.3 4.9 43 342-388 278-320 (445)
45 KOG1194 Predicted DNA-binding 34.4 60 0.0013 35.1 4.8 45 341-390 187-231 (534)
46 PLN03162 golden-2 like transcr 27.1 1.7E+02 0.0037 31.2 6.5 53 336-390 232-286 (526)
47 KOG0514 Ankyrin repeat protein 26.1 1.3E+02 0.0027 32.1 5.4 68 61-130 191-263 (452)
No 1
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.36 E-value=6.1e-13 Score=97.19 Aligned_cols=47 Identities=32% Similarity=0.713 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCC-CCChhHHHHHHHHhh
Q 016203 341 KKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFD-ERTEVDLKDKWRNVM 391 (393)
Q Consensus 341 R~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~-gRT~vqlKDRWRnll 391 (393)
|++||++|++.|+++|.+||.++|+.|+.. |+ +||..||++||++++
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~----~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKR----MPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHH----HSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHH----cCCCCCHHHHHHHHHhhC
Confidence 579999999999999999999889999998 77 999999999999985
No 2
>PLN03212 Transcription repressor MYB5; Provisional
Probab=99.19 E-value=2.8e-11 Score=116.61 Aligned_cols=64 Identities=25% Similarity=0.456 Sum_probs=53.2
Q ss_pred CCCCccccCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCC-CCCChhHHHHHHHHhhc
Q 016203 317 PSPKRKAVSPLKNHDVTKLARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAF-DERTEVDLKDKWRNVMR 392 (393)
Q Consensus 317 psP~r~~vsP~~~~~~~~~~~rrkR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f-~gRT~vqlKDRWRnllr 392 (393)
|.|++...++.+ ...+|++||+|||+.|+++|++||.++|+.|+.. + .+||+.||++||.|+|+
T Consensus 9 ~~~~~~~pcc~K--------~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~----~g~gRT~KQCReRW~N~L~ 73 (249)
T PLN03212 9 PVSKKTTPCCTK--------MGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKR----AGLLRCGKSCRLRWMNYLR 73 (249)
T ss_pred CCCCCCCCCccc--------CCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHh----hhcCCCcchHHHHHHHhhc
Confidence 455555555544 3356999999999999999999999999999986 5 59999999999999975
No 3
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=99.09 E-value=2.1e-10 Score=80.44 Aligned_cols=48 Identities=33% Similarity=0.761 Sum_probs=44.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHhhc
Q 016203 341 KKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 341 R~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnllr 392 (393)
+..||++|++.|+.++.+||.++|..|+.. |++||+.+|++||+++++
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~----~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKE----LPGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHH----cCCCCHHHHHHHHHHHcC
Confidence 468999999999999999997799999997 779999999999999875
No 4
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.05 E-value=1.1e-10 Score=124.04 Aligned_cols=83 Identities=18% Similarity=0.365 Sum_probs=77.6
Q ss_pred ccccCCCCCCCcccc-cCCccceeeeccCCCCCCCCCCcccCCCCCCccccCCCCCCCccccccCCCCCCCCHHHHHHHH
Q 016203 275 SCSHQSNVPKSSLME-RNSTAHAYEWDDSIDEEPSNQGNRFHLPSPKRKAVSPLKNHDVTKLARRRKKKKWSLEEEDALR 353 (393)
Q Consensus 275 ~~~~~~~~~~~slMe-rn~ta~t~eWddS~D~~~~~~~~r~~lpsP~r~~vsP~~~~~~~~~~~rrkR~~WT~EEDe~L~ 353 (393)
+-+|+++.+.-+||+ |.+++.+|+|+.+.||+. ++++||.+||..|+
T Consensus 325 ~nShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsi--------------------------------khg~wt~~ED~~L~ 372 (939)
T KOG0049|consen 325 INSHIQWDKVVQYMPGRTRQQLITRFSHTLDPSV--------------------------------KHGRWTDQEDVLLV 372 (939)
T ss_pred ccCccchHHHHHhcCCcchhhhhhhheeccCccc--------------------------------cCCCCCCHHHHHHH
Confidence 567999999999999 999999999999999984 68999999999999
Q ss_pred HHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHhhcC
Q 016203 354 KGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMRY 393 (393)
Q Consensus 354 ~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnllry 393 (393)
.+|++||...|.+|... |+||++.||++||.|.|.+
T Consensus 373 ~AV~~Yg~kdw~k~R~~----vPnRSdsQcR~RY~nvL~~ 408 (939)
T KOG0049|consen 373 CAVSRYGAKDWAKVRQA----VPNRSDSQCRERYTNVLNR 408 (939)
T ss_pred HHHHHhCccchhhHHHh----cCCccHHHHHHHHHHHHHH
Confidence 99999999999999997 8899999999999998753
No 5
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=98.98 E-value=6.9e-10 Score=83.83 Aligned_cols=43 Identities=33% Similarity=0.791 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHhh
Q 016203 344 WSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVM 391 (393)
Q Consensus 344 WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnll 391 (393)
||++||+.|+.+|.+||. +|+.|+.. |++||+.||++||++++
T Consensus 1 WT~eEd~~L~~~~~~~g~-~W~~Ia~~----l~~Rt~~~~~~r~~~~l 43 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN-DWKKIAEH----LGNRTPKQCRNRWRNHL 43 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS--HHHHHHH----STTS-HHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHCc-CHHHHHHH----HCcCCHHHHHHHHHHHC
Confidence 999999999999999995 99999997 76799999999999954
No 6
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.96 E-value=1.2e-09 Score=75.63 Aligned_cols=45 Identities=36% Similarity=0.831 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHhh
Q 016203 343 KWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVM 391 (393)
Q Consensus 343 ~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnll 391 (393)
+||.+|++.|+.++.+||.++|..|+.. |++||..||++||.+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~----~~~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKE----LPGRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhH----cCCCCHHHHHHHHHHhC
Confidence 5999999999999999997799999997 77899999999999874
No 7
>PLN03091 hypothetical protein; Provisional
Probab=98.95 E-value=6.3e-10 Score=114.47 Aligned_cols=52 Identities=27% Similarity=0.588 Sum_probs=47.4
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCC-CCCChhHHHHHHHHhhc
Q 016203 337 RRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAF-DERTEVDLKDKWRNVMR 392 (393)
Q Consensus 337 ~rrkR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f-~gRT~vqlKDRWRnllr 392 (393)
++.++++||+|||++|+++|++||.++|+.|+.. + .+||+.||++||.++|+
T Consensus 10 qklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~----~g~gRT~KQCRERW~NyLd 62 (459)
T PLN03091 10 QKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQ----AGLQRCGKSCRLRWINYLR 62 (459)
T ss_pred CCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhh----hccCcCcchHhHHHHhccC
Confidence 5567889999999999999999999999999985 4 49999999999999875
No 8
>PLN03212 Transcription repressor MYB5; Provisional
Probab=98.89 E-value=9.7e-10 Score=106.05 Aligned_cols=68 Identities=24% Similarity=0.296 Sum_probs=57.7
Q ss_pred CCccccCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHhhc
Q 016203 319 PKRKAVSPLKNHDVTKLARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 319 P~r~~vsP~~~~~~~~~~~rrkR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnllr 392 (393)
|.|..-++..++.+ .+....++++||.|||+.|++++.+||. +|+.|+.. |+|||+.|||+||..++|
T Consensus 57 ~gRT~KQCReRW~N-~L~P~I~kgpWT~EED~lLlel~~~~Gn-KWs~IAk~----LpGRTDnqIKNRWns~Lr 124 (249)
T PLN03212 57 LLRCGKSCRLRWMN-YLRPSVKRGGITSDEEDLILRLHRLLGN-RWSLIAGR----IPGRTDNEIKNYWNTHLR 124 (249)
T ss_pred cCCCcchHHHHHHH-hhchhcccCCCChHHHHHHHHHHHhccc-cHHHHHhh----cCCCCHHHHHHHHHHHHh
Confidence 45555666666654 3667788999999999999999999996 99999997 899999999999998764
No 9
>PLN03091 hypothetical protein; Provisional
Probab=98.78 E-value=4.4e-09 Score=108.36 Aligned_cols=68 Identities=21% Similarity=0.304 Sum_probs=57.4
Q ss_pred CCccccCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHhhc
Q 016203 319 PKRKAVSPLKNHDVTKLARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 319 P~r~~vsP~~~~~~~~~~~rrkR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnllr 392 (393)
+.|..-.|..|+.+ .+....++++||+|||+.|++++.+||. +|..|+.. |+|||+.+||+||+.++|
T Consensus 46 ~gRT~KQCRERW~N-yLdP~IkKgpWT~EED~lLLeL~k~~Gn-KWskIAk~----LPGRTDnqIKNRWnslLK 113 (459)
T PLN03091 46 LQRCGKSCRLRWIN-YLRPDLKRGTFSQQEENLIIELHAVLGN-RWSQIAAQ----LPGRTDNEIKNLWNSCLK 113 (459)
T ss_pred cCcCcchHhHHHHh-ccCCcccCCCCCHHHHHHHHHHHHHhCc-chHHHHHh----cCCCCHHHHHHHHHHHHH
Confidence 45555566666654 3667788999999999999999999997 99999997 889999999999998754
No 10
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=98.46 E-value=2e-07 Score=89.00 Aligned_cols=53 Identities=30% Similarity=0.529 Sum_probs=48.3
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHhhc
Q 016203 335 LARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 335 ~~~rrkR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnllr 392 (393)
+....+|+.||+|||..|+++...||. +|+.|+.+ |+|||+..+|+.|...+|
T Consensus 56 LrP~ikrg~fT~eEe~~Ii~lH~~~GN-rWs~IA~~----LPGRTDNeIKN~Wnt~lk 108 (238)
T KOG0048|consen 56 LRPDLKRGNFSDEEEDLIIKLHALLGN-RWSLIAGR----LPGRTDNEVKNHWNTHLK 108 (238)
T ss_pred cCCCccCCCCCHHHHHHHHHHHHHHCc-HHHHHHhh----CCCcCHHHHHHHHHHHHH
Confidence 556778999999999999999999997 99999997 999999999999977643
No 11
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=98.11 E-value=7.3e-06 Score=63.15 Aligned_cols=49 Identities=18% Similarity=0.397 Sum_probs=42.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCh---hhhhhhCCCCCCCC-ChhHHHHHHHHh
Q 016203 339 RKKKKWSLEEEDALRKGVEQFGKGNW---KLILKSNPGAFDER-TEVDLKDKWRNV 390 (393)
Q Consensus 339 rkR~~WT~EEDe~L~~gVekyG~G~W---k~Ia~~~~~~f~gR-T~vqlKDRWRnl 390 (393)
++|..||+||...++++++.||.|+| +.|+..+ ...| |..||+.+.+.+
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~---~~~~lT~~qV~SH~QKy 53 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELM---VVDGLTRDQVASHLQKY 53 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHc---CCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999999 9999862 2245 999999998876
No 12
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=97.74 E-value=7.2e-06 Score=88.13 Aligned_cols=89 Identities=22% Similarity=0.378 Sum_probs=73.0
Q ss_pred eeeccCCCCCC--------CCCCcccCCCCCCccccCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhCCCChhhhh
Q 016203 297 YEWDDSIDEEP--------SNQGNRFHLPSPKRKAVSPLKNHDVTKLARRRKKKKWSLEEEDALRKGVEQFGKGNWKLIL 368 (393)
Q Consensus 297 ~eWddS~D~~~--------~~~~~r~~lpsP~r~~vsP~~~~~~~~~~~rrkR~~WT~EEDe~L~~gVekyG~G~Wk~Ia 368 (393)
=.|++.+|--. .+.-.+++-..|+|....+..+|-+ .++++-|...||-.||+.|+.+|++||.|+|.+|+
T Consensus 361 g~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~n-vL~~s~K~~rW~l~edeqL~~~V~~YG~g~WakcA 439 (939)
T KOG0049|consen 361 GRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTN-VLNRSAKVERWTLVEDEQLLYAVKVYGKGNWAKCA 439 (939)
T ss_pred CCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHH-HHHHhhccCceeecchHHHHHHHHHHccchHHHHH
Confidence 35888877644 1222467778899999999999976 58899999999999999999999999999999999
Q ss_pred hhCCCCCCCCChhHHHHHHHHh
Q 016203 369 KSNPGAFDERTEVDLKDKWRNV 390 (393)
Q Consensus 369 ~~~~~~f~gRT~vqlKDRWRnl 390 (393)
.. +++||..|+..|-+.+
T Consensus 440 ~~----Lp~~t~~q~~rrR~R~ 457 (939)
T KOG0049|consen 440 ML----LPKKTSRQLRRRRLRL 457 (939)
T ss_pred HH----ccccchhHHHHHHHHH
Confidence 97 8899998876654443
No 13
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.55 E-value=8.1e-05 Score=77.05 Aligned_cols=49 Identities=24% Similarity=0.485 Sum_probs=44.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHhh
Q 016203 339 RKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVM 391 (393)
Q Consensus 339 rkR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnll 391 (393)
.-...||.+|+-.|++++++||.|||..|+.+ ...||..+||+.|.++.
T Consensus 70 i~~~~WtadEEilLLea~~t~G~GNW~dIA~h----IGtKtkeeck~hy~k~f 118 (438)
T KOG0457|consen 70 ILDPSWTADEEILLLEAAETYGFGNWQDIADH----IGTKTKEECKEHYLKHF 118 (438)
T ss_pred CCCCCCChHHHHHHHHHHHHhCCCcHHHHHHH----HcccchHHHHHHHHHHH
Confidence 34667999999999999999999999999998 77999999999998863
No 14
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=97.46 E-value=9.4e-05 Score=79.45 Aligned_cols=47 Identities=40% Similarity=0.743 Sum_probs=44.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHhhc
Q 016203 340 KKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 340 kR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnllr 392 (393)
+|+.||++|++.|..+|.++|. .|+.|.. ..||.+.+|+||||++.+
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g~-~W~~Ig~-----~lgr~P~~crd~wr~~~~ 429 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHGN-DWKEIGK-----ALGRMPMDCRDRWRQYVK 429 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhcc-cHHHHHH-----HHccCcHHHHHHHHHhhc
Confidence 7999999999999999999995 9999999 458999999999999875
No 15
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=97.42 E-value=0.0001 Score=70.66 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=31.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCC
Q 016203 339 RKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNP 372 (393)
Q Consensus 339 rkR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~ 372 (393)
..+++||+|||+.|++.|++||.|+|..|+...+
T Consensus 7 ~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~g 40 (238)
T KOG0048|consen 7 LVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAG 40 (238)
T ss_pred ccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcC
Confidence 3499999999999999999999999999998754
No 16
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=97.07 E-value=0.00029 Score=56.47 Aligned_cols=52 Identities=25% Similarity=0.466 Sum_probs=34.1
Q ss_pred CCCCCHHHHHHHHHHHHH------hCC-----C--ChhhhhhhCCCCCCCCChhHHHHHHHHhhc
Q 016203 341 KKKWSLEEEDALRKGVEQ------FGK-----G--NWKLILKSNPGAFDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 341 R~~WT~EEDe~L~~gVek------yG~-----G--~Wk~Ia~~~~~~f~gRT~vqlKDRWRnllr 392 (393)
|..||.+|...|++.+.. |+. + -|..|+..-...-..||+.||++||.||.+
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~ 65 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKK 65 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 568999999999999888 321 1 499999862100128999999999999864
No 17
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=96.65 E-value=0.0017 Score=61.66 Aligned_cols=57 Identities=28% Similarity=0.422 Sum_probs=49.8
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhCC--CChhhhhhhCCCCCC-CCChhHHHHHHHHhhcC
Q 016203 337 RRRKKKKWSLEEEDALRKGVEQFGK--GNWKLILKSNPGAFD-ERTEVDLKDKWRNVMRY 393 (393)
Q Consensus 337 ~rrkR~~WT~EEDe~L~~gVekyG~--G~Wk~Ia~~~~~~f~-gRT~vqlKDRWRnllry 393 (393)
.-..+.+||.+|++.|........+ .++.+|...++.+|. +||+.+|.+.|+.|.+|
T Consensus 69 ~iq~kalfS~~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy 128 (199)
T PF13325_consen 69 AIQSKALFSKEEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQY 128 (199)
T ss_pred cccccCCCCHHHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHh
Confidence 3456899999999999998777654 579999999999996 79999999999999877
No 18
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=96.59 E-value=0.001 Score=70.82 Aligned_cols=52 Identities=23% Similarity=0.528 Sum_probs=46.7
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHhh
Q 016203 336 ARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVM 391 (393)
Q Consensus 336 ~~rrkR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnll 391 (393)
...++.+.|+..||+.|..+|++||+.+|+.|+.. |..||+.||+.||.+++
T Consensus 15 ~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~----~~~~~~kq~~~rw~~~l 66 (512)
T COG5147 15 QTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASL----LISSTGKQSSNRWNNHL 66 (512)
T ss_pred cceecCCCCCCcchhHHHHHHhhcccccHHHHHHH----hcccccccccchhhhhh
Confidence 35567889999999999999999999999999998 66799999999997754
No 19
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=96.52 E-value=0.0051 Score=48.65 Aligned_cols=52 Identities=31% Similarity=0.427 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHHHh-----CC-----------CChhhhhhhCCCCCC-CCChhHHHHHHHHhhc
Q 016203 341 KKKWSLEEEDALRKGVEQF-----GK-----------GNWKLILKSNPGAFD-ERTEVDLKDKWRNVMR 392 (393)
Q Consensus 341 R~~WT~EEDe~L~~gVeky-----G~-----------G~Wk~Ia~~~~~~f~-gRT~vqlKDRWRnllr 392 (393)
...||.+|.+.|++.|++| |. .-|..|+..+-..++ .||..||+.+|.++..
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~ 70 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKS 70 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 5689999999999999998 31 249999988633333 8999999999999863
No 20
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=95.78 E-value=0.012 Score=62.85 Aligned_cols=49 Identities=14% Similarity=0.392 Sum_probs=44.2
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHh
Q 016203 337 RRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNV 390 (393)
Q Consensus 337 ~rrkR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnl 390 (393)
.-.-+..||.+|.-.|+++|++||. .|.+|+.+ ..+||.-||-.|+..+
T Consensus 249 ~~~~~~~WT~qE~lLLLE~ie~y~d-dW~kVa~h----Vg~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 249 GESARPNWTEQETLLLLEAIEMYGD-DWNKVADH----VGTKSQEQCILKFLRL 297 (506)
T ss_pred cccCCCCccHHHHHHHHHHHHHhcc-cHHHHHhc----cCCCCHHHHHHHHHhc
Confidence 3456889999999999999999997 99999998 6699999999999765
No 21
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=95.47 E-value=0.021 Score=45.18 Aligned_cols=49 Identities=27% Similarity=0.509 Sum_probs=32.9
Q ss_pred CCCCCHHHHHHHHHHHHHh---C---CCC--hhhhhhhCCCCCCCCChhHHHHHHHHhhc
Q 016203 341 KKKWSLEEEDALRKGVEQF---G---KGN--WKLILKSNPGAFDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 341 R~~WT~EEDe~L~~gVeky---G---~G~--Wk~Ia~~~~~~f~gRT~vqlKDRWRnllr 392 (393)
|.+||.+||.+|++-|.++ | .|| |+.+...++ ..+|-...+|||+..++
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~---t~HtwQSwR~Ry~K~L~ 58 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHP---TRHTWQSWRDRYLKHLR 58 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-S---SS--SHHHHHHHHHHT-
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC---CCCCHHHHHHHHHHHHh
Confidence 6789999999999999665 3 244 999998732 38999999999987654
No 22
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=95.20 E-value=0.02 Score=60.38 Aligned_cols=46 Identities=22% Similarity=0.492 Sum_probs=41.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHh
Q 016203 340 KKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNV 390 (393)
Q Consensus 340 kR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnl 390 (393)
....||.+|.-.|++|++.||. .|.+|+.+ ..++|..||--||-++
T Consensus 278 ~dk~WS~qE~~LLLEGIe~ygD-dW~kVA~H----VgtKt~EqCIl~FL~L 323 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYGD-DWDKVARH----VGTKTKEQCILHFLQL 323 (531)
T ss_pred ccccccHHHHHHHHHHHHHhhh-hHHHHHHH----hCCCCHHHHHHHHHcC
Confidence 4669999999999999999997 99999998 6799999999888664
No 23
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=95.04 E-value=0.025 Score=60.42 Aligned_cols=52 Identities=31% Similarity=0.509 Sum_probs=46.7
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHhh
Q 016203 335 LARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVM 391 (393)
Q Consensus 335 ~~~rrkR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnll 391 (393)
.....++..|+.+||+.|+.+-.++|. .|..|+.. .++||..+|.+||.+.+
T Consensus 66 lnp~lk~~~~~~eed~~li~l~~~~~~-~wstia~~----~d~rt~~~~~ery~~~~ 117 (512)
T COG5147 66 LNPQLKKKNWSEEEDEQLIDLDKELGT-QWSTIADY----KDRRTAQQCVERYVNTL 117 (512)
T ss_pred hchhcccccccHHHHHHHHHHHHhcCc-hhhhhccc----cCccchHHHHHHHHHHh
Confidence 445678999999999999999999998 89999995 67899999999999765
No 24
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=94.98 E-value=0.022 Score=57.79 Aligned_cols=47 Identities=23% Similarity=0.527 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHhh
Q 016203 341 KKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVM 391 (393)
Q Consensus 341 R~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnll 391 (393)
-..|+..|+-.|+++.+..|.|||..|+.+ ...|+...||++|.++.
T Consensus 63 ~e~WgadEEllli~~~~TlGlGNW~dIady----iGsr~kee~k~HylK~y 109 (432)
T COG5114 63 EEGWGADEELLLIECLDTLGLGNWEDIADY----IGSRAKEEIKSHYLKMY 109 (432)
T ss_pred CCCcCchHHHHHHHHHHhcCCCcHHHHHHH----HhhhhhHHHHHHHHHHH
Confidence 457999999999999999999999999997 66899999999998763
No 25
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=93.31 E-value=0.089 Score=57.23 Aligned_cols=49 Identities=33% Similarity=0.638 Sum_probs=42.7
Q ss_pred CCCCCCCHHHHHHHHHHHH-------Hh------------------CCCChhhhhhhCCCCCCCCChhHHHHHHHHhh
Q 016203 339 RKKKKWSLEEEDALRKGVE-------QF------------------GKGNWKLILKSNPGAFDERTEVDLKDKWRNVM 391 (393)
Q Consensus 339 rkR~~WT~EEDe~L~~gVe-------ky------------------G~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnll 391 (393)
++++.||.||++.|++.|+ +| -.-+|..|... +..|+..||+-||..++
T Consensus 434 ~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~----~~TR~~~qCr~Kw~kl~ 507 (607)
T KOG0051|consen 434 RNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEM----LGTRSRIQCRYKWYKLT 507 (607)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHh----hcCCCcchHHHHHHHHH
Confidence 7899999999999999996 55 12379999995 78999999999999875
No 26
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=93.07 E-value=0.06 Score=57.55 Aligned_cols=49 Identities=24% Similarity=0.413 Sum_probs=44.1
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHhh
Q 016203 337 RRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVM 391 (393)
Q Consensus 337 ~rrkR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnll 391 (393)
...++.-||.|||+.|+.+...+-. .|..|+. +.|||..||-.||.+++
T Consensus 55 p~i~~tews~eederlLhlakl~p~-qwrtIa~-----i~gr~~~qc~eRy~~ll 103 (617)
T KOG0050|consen 55 PAIKKTEWSREEDERLLHLAKLEPT-QWRTIAD-----IMGRTSQQCLERYNNLL 103 (617)
T ss_pred HHHhhhhhhhhHHHHHHHHHHhcCC-ccchHHH-----HhhhhHHHHHHHHHHHH
Confidence 3457899999999999999999987 9999999 56999999999999976
No 27
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=92.90 E-value=0.19 Score=44.20 Aligned_cols=54 Identities=30% Similarity=0.447 Sum_probs=41.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC---CChhhhhhhC-------CCCC-CCCChhHHHHHHHHhhc
Q 016203 339 RKKKKWSLEEEDALRKGVEQFGK---GNWKLILKSN-------PGAF-DERTEVDLKDKWRNVMR 392 (393)
Q Consensus 339 rkR~~WT~EEDe~L~~gVekyG~---G~Wk~Ia~~~-------~~~f-~gRT~vqlKDRWRnllr 392 (393)
.+++.||.+||..|+-.+.+||. |.|..|...- +|.| ..||+..|..|=..|++
T Consensus 47 ~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~ 111 (118)
T PF09111_consen 47 NKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIK 111 (118)
T ss_dssp SS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHH
T ss_pred CCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHH
Confidence 45889999999999999999999 9999998651 2222 39999999999888764
No 28
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=92.71 E-value=0.13 Score=51.61 Aligned_cols=53 Identities=21% Similarity=0.293 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHHHHHHHHh----CCCC-----hhhhhhhCCCCCCCCChhHHHHHHHHhhcC
Q 016203 341 KKKWSLEEEDALRKGVEQF----GKGN-----WKLILKSNPGAFDERTEVDLKDKWRNVMRY 393 (393)
Q Consensus 341 R~~WT~EEDe~L~~gVeky----G~G~-----Wk~Ia~~~~~~f~gRT~vqlKDRWRnllry 393 (393)
...|+.+|...|++.-.+. +.|+ |..|+......=..||+.|||.||.||.+|
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~ 115 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKK 115 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999887654 3344 999998421112379999999999999764
No 29
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=87.71 E-value=0.46 Score=49.53 Aligned_cols=51 Identities=29% Similarity=0.451 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhhhhC-CCCCC-CCChhHHHHHHHHhhc
Q 016203 341 KKKWSLEEEDALRKGVEQFGKGNWKLILKSN-PGAFD-ERTEVDLKDKWRNVMR 392 (393)
Q Consensus 341 R~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~-~~~f~-gRT~vqlKDRWRnllr 392 (393)
-..||.+|.+.|.+++++|-- +|--|+..| .-.|+ .||-.+||+||..++|
T Consensus 130 dn~WskeETD~LF~lck~fDL-Rf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r 182 (445)
T KOG2656|consen 130 DNSWSKEETDYLFDLCKRFDL-RFFVIADRYDNQQYKKSRTVEDLKERYYSVCR 182 (445)
T ss_pred cccccHHHHHHHHHHHHhcCe-eEEEEeeccchhhccccccHHHHHHHHHHHHH
Confidence 478999999999999999997 999999986 11255 5999999999976543
No 30
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=87.68 E-value=0.64 Score=53.80 Aligned_cols=54 Identities=22% Similarity=0.302 Sum_probs=44.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhC-------CCC-CCCCChhHHHHHHHHhhc
Q 016203 339 RKKKKWSLEEEDALRKGVEQFGKGNWKLILKSN-------PGA-FDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 339 rkR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~-------~~~-f~gRT~vqlKDRWRnllr 392 (393)
.+++.||.+||..|+-.+.+||.|+|..|...- ++. |..||+..|+.|=..|++
T Consensus 924 ~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~ 985 (1033)
T PLN03142 924 NKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIR 985 (1033)
T ss_pred CCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHH
Confidence 456679999999999999999999999995541 222 359999999999888765
No 31
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=87.30 E-value=0.76 Score=37.15 Aligned_cols=50 Identities=24% Similarity=0.447 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHHHHh---CC----C-----ChhhhhhhCCCCCC-CCChhHHHHHHHHhhc
Q 016203 343 KWSLEEEDALRKGVEQF---GK----G-----NWKLILKSNPGAFD-ERTEVDLKDKWRNVMR 392 (393)
Q Consensus 343 ~WT~EEDe~L~~gVeky---G~----G-----~Wk~Ia~~~~~~f~-gRT~vqlKDRWRnllr 392 (393)
.||++.++.|++++... |. | .|..|+..+...+. .-|..||++||..+.+
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~ 63 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKK 63 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence 59999999999988665 22 2 28888876432232 6688999999998754
No 32
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=85.00 E-value=1.5 Score=45.95 Aligned_cols=51 Identities=22% Similarity=0.477 Sum_probs=45.8
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHh
Q 016203 335 LARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNV 390 (393)
Q Consensus 335 ~~~rrkR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnl 390 (393)
..+++..-+||.+|-+++-.+...+|. .+..|+.. |+.|.-.|+|-||.+-
T Consensus 359 ~g~~~~~~~Ws~~e~ekFYKALs~wGt-dF~LIs~l----fP~R~RkqIKaKfi~E 409 (507)
T COG5118 359 FGKKKGALRWSKKEIEKFYKALSIWGT-DFSLISSL----FPNRERKQIKAKFIKE 409 (507)
T ss_pred ccCCCCCCcccHHHHHHHHHHHHHhcc-hHHHHHHh----cCchhHHHHHHHHHHH
Confidence 456677889999999999999999998 99999997 8899999999999763
No 33
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=79.89 E-value=0.88 Score=42.57 Aligned_cols=52 Identities=17% Similarity=0.230 Sum_probs=36.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhh--CCCCCCCCChhHHHHHHHHhhc
Q 016203 340 KKKKWSLEEEDALRKGVEQFGKGNWKLILKS--NPGAFDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 340 kR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~--~~~~f~gRT~vqlKDRWRnllr 392 (393)
+...||.|+|..|-+.|-+|+.--=.++..+ +. ..-+||...|..||..++|
T Consensus 4 rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g-~~L~rt~aac~fRwNs~vr 57 (170)
T PRK13923 4 RQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVG-DALKRTAAACGFRWNSVVR 57 (170)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHH-HHHhhhHHHHHhHHHHHHH
Confidence 4678999999999999999975222223221 00 0238999999999977765
No 34
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=76.23 E-value=1.4 Score=40.91 Aligned_cols=48 Identities=21% Similarity=0.404 Sum_probs=36.1
Q ss_pred CCCCCCHHHHHHHHHHHHHh---CCCC---hhhhhhhCCCCCCCCChhHHHHHHHHhhc
Q 016203 340 KKKKWSLEEEDALRKGVEQF---GKGN---WKLILKSNPGAFDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 340 kR~~WT~EEDe~L~~gVeky---G~G~---Wk~Ia~~~~~~f~gRT~vqlKDRWRnllr 392 (393)
+...||.+||..|-+.|-+| |.-. ...+... -+||+.-|.=||..++|
T Consensus 3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~-----L~RTsAACGFRWNs~VR 56 (161)
T TIGR02894 3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRA-----LNRTAAACGFRWNAYVR 56 (161)
T ss_pred cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHH-----HcccHHHhcchHHHHHH
Confidence 45689999999999999999 4311 2222221 28999999999999887
No 35
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=60.80 E-value=23 Score=32.29 Aligned_cols=52 Identities=19% Similarity=0.294 Sum_probs=41.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHhh
Q 016203 339 RKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVM 391 (393)
Q Consensus 339 rkR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnll 391 (393)
.+...-|..|.+.+..+|++||. ++...+..-.-..--.|..||+.+.+.+.
T Consensus 112 ~~~~~ls~~e~~~i~~Li~KhGd-Dy~aMarD~KLN~~Q~T~~qlrrki~~~k 163 (164)
T PF09420_consen 112 KKPRRLSEREIEYIEYLIEKHGD-DYKAMARDRKLNYMQHTPGQLRRKIRKYK 163 (164)
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc-cHHHHhccCCCCcccCCHHHHHHHHHHhc
Confidence 56788899999999999999996 88888876431122589999999988765
No 36
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=55.60 E-value=6.6 Score=46.47 Aligned_cols=31 Identities=26% Similarity=0.531 Sum_probs=28.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhh
Q 016203 340 KKKKWSLEEEDALRKGVEQFGKGNWKLILKS 370 (393)
Q Consensus 340 kR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~ 370 (393)
.-.-|..++|..|+-||-+||.|+|..|...
T Consensus 1132 ~~~~W~~e~Ds~LLiGI~khGygswe~Ir~D 1162 (1373)
T KOG0384|consen 1132 WDCDWGSEDDSMLLIGIFKHGYGSWEAIRLD 1162 (1373)
T ss_pred cccCCCchhhhhHhhhhhhcccccHHHhccC
Confidence 4678999999999999999999999999875
No 37
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=50.88 E-value=13 Score=27.70 Aligned_cols=31 Identities=19% Similarity=0.307 Sum_probs=19.5
Q ss_pred ccccCCCCCCCccccccCCCCCCCCHHHHHHH
Q 016203 321 RKAVSPLKNHDVTKLARRRKKKKWSLEEEDAL 352 (393)
Q Consensus 321 r~~vsP~~~~~~~~~~~rrkR~~WT~EEDe~L 352 (393)
|...++..++.. .+..+..+.+||.+||+.|
T Consensus 30 Rt~~~~~~r~~~-~l~~~~~~~~wt~eEd~~L 60 (60)
T PF13921_consen 30 RTPKQCRNRWRN-HLRPKISRGPWTKEEDQRL 60 (60)
T ss_dssp S-HHHHHHHHHH-TTSTTSTSSSSSHHHHHHH
T ss_pred CCHHHHHHHHHH-HCcccccCCCcCHHHHhcC
Confidence 333334444432 2456678999999999987
No 38
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=49.30 E-value=33 Score=29.07 Aligned_cols=52 Identities=25% Similarity=0.430 Sum_probs=35.2
Q ss_pred CCCCCCHHHHHHHHHHHHHh----CCC---ChhhhhhhCCCCCC-CCChhHHHHHHHHhh
Q 016203 340 KKKKWSLEEEDALRKGVEQF----GKG---NWKLILKSNPGAFD-ERTEVDLKDKWRNVM 391 (393)
Q Consensus 340 kR~~WT~EEDe~L~~gVeky----G~G---~Wk~Ia~~~~~~f~-gRT~vqlKDRWRnll 391 (393)
-.+.||+++|=.|++|+-.| |.. .|..+.......+. +=|..|+.+|-|.|.
T Consensus 3 ~qR~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK 62 (98)
T PF04504_consen 3 FQRLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLK 62 (98)
T ss_pred CcCCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Confidence 35779999999999999888 643 34333332111122 447889999988874
No 39
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=44.25 E-value=1.1e+02 Score=34.31 Aligned_cols=27 Identities=26% Similarity=0.637 Sum_probs=24.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhh
Q 016203 340 KKKKWSLEEEDALRKGVEQFGKGNWKLI 367 (393)
Q Consensus 340 kR~~WT~EEDe~L~~gVekyG~G~Wk~I 367 (393)
.|.-||..|++.+.+++.+||. ++.+|
T Consensus 87 ~ktaWt~~E~~~Ffdal~~~GK-dFe~V 113 (782)
T KOG4468|consen 87 AKTAWTHQEEESFFDALRQVGK-DFEKV 113 (782)
T ss_pred cccccchhhHHHHHHHHHHhcc-cHHHH
Confidence 3789999999999999999997 88887
No 40
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=43.83 E-value=29 Score=38.24 Aligned_cols=49 Identities=22% Similarity=0.500 Sum_probs=43.9
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHH
Q 016203 336 ARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRN 389 (393)
Q Consensus 336 ~~rrkR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRn 389 (393)
.++....+||.+|-++...+...+|. +.+.|+.. |+.|+..|+|-|+++
T Consensus 404 sk~~~~~~w~~se~e~fyka~~~~gs-~~slis~l----~p~R~rk~iK~K~~~ 452 (584)
T KOG2009|consen 404 SKKLETDKWDASETELFYKALSERGS-DFSLISNL----FPLRDRKQIKAKFKK 452 (584)
T ss_pred cCccccCcccchhhHHhhhHHhhhcc-cccccccc----cccccHHHHHHHHhh
Confidence 34556889999999999999999998 99999996 889999999999875
No 41
>PF03540 TFIID_30kDa: Transcription initiation factor TFIID 23-30kDa subunit; InterPro: IPR003923 Transcription initiation factor TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. The complex includes TATA binding protein (TBP) and various TBP-associated factors (TAFS). TFIID a bona fide RNA polymerase II-specific TATA-binding protein-associated factor (TAF) and is essential for viability []. TFIID acts to nucleate the transcription complex, recruiting the rest of the factors through a direct interaction with TFIIB. The TBP subunit of TFIID is sufficient for TATA-element binding and TFIIB interaction, and can support basal transcription. The protein belongs to the TAF2H family.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus
Probab=43.21 E-value=43 Score=25.70 Aligned_cols=30 Identities=17% Similarity=0.221 Sum_probs=25.5
Q ss_pred CCCcHHHHHHHHhhcCCCCCCchhHHHHHHH
Q 016203 16 NSPSDQLINRILAIIPISNNNNFRLKKTLLL 46 (393)
Q Consensus 16 ~~i~~~~~~~ll~~lP~~~~~~pRlkk~llL 46 (393)
|.||++++.-.|..-=+.. +.||++|.+-|
T Consensus 1 P~IPD~v~~~yL~~~G~~~-~D~rv~RLvSL 30 (51)
T PF03540_consen 1 PTIPDEVTDYYLERSGFQT-SDPRVKRLVSL 30 (51)
T ss_pred CCCCHHHHHHHHHHCCCCC-CCHhHHHHHHH
Confidence 5799999999999777766 68999998765
No 42
>smart00595 MADF subfamily of SANT domain.
Probab=42.55 E-value=19 Score=28.67 Aligned_cols=24 Identities=21% Similarity=0.578 Sum_probs=19.6
Q ss_pred ChhhhhhhCCCCCCCCChhHHHHHHHHhh
Q 016203 363 NWKLILKSNPGAFDERTEVDLKDKWRNVM 391 (393)
Q Consensus 363 ~Wk~Ia~~~~~~f~gRT~vqlKDRWRnll 391 (393)
-|..|+.. + +-|..+|+.||++|.
T Consensus 29 aW~~Ia~~----l-~~~~~~~~~kw~~LR 52 (89)
T smart00595 29 AWEEIAEE----L-GLSVEECKKRWKNLR 52 (89)
T ss_pred HHHHHHHH----H-CcCHHHHHHHHHHHH
Confidence 48999886 4 339999999999984
No 43
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=37.74 E-value=30 Score=28.44 Aligned_cols=21 Identities=19% Similarity=0.544 Sum_probs=11.9
Q ss_pred CCCCCCHHHHHHH--------HHHHHHhC
Q 016203 340 KKKKWSLEEEDAL--------RKGVEQFG 360 (393)
Q Consensus 340 kR~~WT~EEDe~L--------~~gVekyG 360 (393)
..+-||+++|+.| ..++++||
T Consensus 46 ~~GiWT~eDD~~L~~~~~~~~~~L~~khG 74 (87)
T PF11626_consen 46 MPGIWTPEDDEMLRSGDKDDIERLIKKHG 74 (87)
T ss_dssp -TT---HHHHHHHTS--HHHHHHHHHHH-
T ss_pred CCCCcCHHHHHHHHcCCHHHHHHHHHHhC
Confidence 4788999999999 34455665
No 44
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=35.48 E-value=60 Score=34.30 Aligned_cols=43 Identities=28% Similarity=0.512 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHH
Q 016203 342 KKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWR 388 (393)
Q Consensus 342 ~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWR 388 (393)
.-||++|=..+.+|++.||+ ++..|... .+..|+-..|-.-|.
T Consensus 278 ~~wsEeEcr~FEegl~~yGK-DF~lIr~n---kvrtRsvgElVeyYY 320 (445)
T KOG4329|consen 278 SGWSEEECRNFEEGLELYGK-DFHLIRAN---KVRTRSVGELVEYYY 320 (445)
T ss_pred ccCCHHHHHHHHHHHHHhcc-cHHHHHhc---ccccchHHHHHHHHH
Confidence 45999999999999999997 99999875 377899988876543
No 45
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=34.45 E-value=60 Score=35.10 Aligned_cols=45 Identities=18% Similarity=0.383 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHh
Q 016203 341 KKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNV 390 (393)
Q Consensus 341 R~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnl 390 (393)
...||.||--.|-++.+.||. +..+|... +++|+-..|..-|..+
T Consensus 187 ~d~WT~Ed~vlFe~aF~~~GK-~F~kIrq~----LP~rsLaSlvqyYy~~ 231 (534)
T KOG1194|consen 187 PDEWTAEDIVLFEQAFQFFGK-DFHKIRQA----LPHRSLASLVQYYYSW 231 (534)
T ss_pred cccchHHHHHHHHHHHHHhcc-cHHHHHHH----ccCccHHHHHHHHHHH
Confidence 557999999999999999997 99999997 8899988777665544
No 46
>PLN03162 golden-2 like transcription factor; Provisional
Probab=27.06 E-value=1.7e+02 Score=31.18 Aligned_cols=53 Identities=19% Similarity=0.241 Sum_probs=40.4
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhCC--CChhhhhhhCCCCCCCCChhHHHHHHHHh
Q 016203 336 ARRRKKKKWSLEEEDALRKGVEQFGK--GNWKLILKSNPGAFDERTEVDLKDKWRNV 390 (393)
Q Consensus 336 ~~rrkR~~WT~EEDe~L~~gVekyG~--G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnl 390 (393)
.++|.|-.||+|=-+.++++|++.|. -.=+.|.+.-. +.|=|-.+++...++|
T Consensus 232 g~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMn--V~GLTRenVKSHLQKY 286 (526)
T PLN03162 232 GKKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMG--VQCLTRHNIASHLQKY 286 (526)
T ss_pred CCCCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcC--CCCcCHHHHHHHHHHH
Confidence 35678999999999999999999994 24677777522 4588888888665444
No 47
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=26.12 E-value=1.3e+02 Score=32.13 Aligned_cols=68 Identities=21% Similarity=0.285 Sum_probs=43.7
Q ss_pred ccHHHHHHHHHhhhcCccccchhhHHHHHH---HHH-hh-hccCcHHHHHHHHHHHHHHHHHhcCccHHHHHHhh
Q 016203 61 LSKTILENLKAVRDLDEKEGIAITRSMEAA---IRD-AA-ENTQNDDALRQVVKTYLEEAWASMGPTFLELAAAG 130 (393)
Q Consensus 61 ~se~~L~~le~l~e~d~~e~~~~~d~~~aA---~~~-~~-~~~~~~~A~~~~vr~~L~~awa~~GPSfLE~aA~~ 130 (393)
+|+.+++.|++|.+.--+-...+...||-| |.. -| .-.+. .|--+.|+|||+ +..+|+|-.|+.+---
T Consensus 191 ls~~l~~a~~~~~~si~~p~alt~~~lk~a~~tv~~eW~~~a~~s-~a~pe~V~~~l~-~f~als~~lL~yvVNl 263 (452)
T KOG0514|consen 191 LSQSLKSALKILNDSILKPLALTSQSLKSAKATVQHEWFTNSSTS-SSDPEQVEDYLA-YFEALSPPLLEYVVNL 263 (452)
T ss_pred hhHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHHHHhcccC-CCCHHHHHHHHH-HHHhcChHHHHHHhhh
Confidence 577778888887643322224556677776 222 12 22333 555569999996 5899999999996443
Done!