Query 016203
Match_columns 393
No_of_seqs 189 out of 830
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 09:38:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016203.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016203hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2roh_A RTBP1, telomere binding 99.8 9.1E-21 3.1E-25 164.0 7.6 80 313-392 3-82 (122)
2 2aje_A Telomere repeat-binding 99.7 9.8E-18 3.4E-22 141.7 6.8 60 334-393 6-65 (105)
3 3sjm_A Telomeric repeat-bindin 99.7 1.7E-17 5.9E-22 128.3 6.6 54 338-393 8-61 (64)
4 2juh_A Telomere binding protei 99.7 2.6E-17 8.8E-22 142.2 6.3 60 333-392 9-68 (121)
5 1w0t_A Telomeric repeat bindin 99.6 1.6E-16 5.4E-21 117.6 6.6 52 340-393 1-52 (53)
6 2ckx_A NGTRF1, telomere bindin 99.6 8.7E-17 3E-21 130.6 5.3 51 342-392 1-51 (83)
7 1x58_A Hypothetical protein 49 99.6 2.8E-16 9.4E-21 121.5 6.7 53 338-392 5-57 (62)
8 1ity_A TRF1; helix-turn-helix, 99.6 4.1E-16 1.4E-20 121.1 6.6 56 335-392 4-59 (69)
9 1guu_A C-MYB, MYB proto-oncoge 99.6 5.1E-15 1.8E-19 108.6 6.3 49 340-392 2-50 (52)
10 1gvd_A MYB proto-oncogene prot 99.5 9.7E-15 3.3E-19 107.3 6.3 49 340-392 2-50 (52)
11 2d9a_A B-MYB, MYB-related prot 99.5 1.1E-14 3.6E-19 110.0 6.4 52 337-392 4-55 (60)
12 2dim_A Cell division cycle 5-l 99.5 6.1E-14 2.1E-18 109.0 6.5 52 337-392 5-56 (70)
13 1x41_A Transcriptional adaptor 99.4 7.5E-14 2.6E-18 105.8 5.8 51 338-392 5-55 (60)
14 2elk_A SPCC24B10.08C protein; 99.4 1.8E-13 6.2E-18 103.3 5.6 48 340-391 8-56 (58)
15 2cu7_A KIAA1915 protein; nucle 99.3 8.7E-13 3E-17 103.2 5.5 51 337-392 5-55 (72)
16 2din_A Cell division cycle 5-l 99.3 9.5E-13 3.2E-17 101.1 4.8 51 336-392 4-54 (66)
17 1h8a_C AMV V-MYB, MYB transfor 99.3 1.6E-12 5.5E-17 111.2 6.5 69 319-392 6-74 (128)
18 2llk_A Cyclin-D-binding MYB-li 99.3 1.3E-12 4.3E-17 103.8 5.4 52 335-392 17-68 (73)
19 2yum_A ZZZ3 protein, zinc fing 99.3 1.6E-12 5.3E-17 102.1 4.5 51 338-392 5-60 (75)
20 1gv2_A C-MYB, MYB proto-oncoge 99.3 5.2E-12 1.8E-16 104.3 6.4 49 340-392 3-51 (105)
21 1gv2_A C-MYB, MYB proto-oncoge 99.2 2.9E-12 9.8E-17 105.9 3.7 67 320-392 36-102 (105)
22 2k9n_A MYB24; R2R3 domain, DNA 99.2 8.6E-12 2.9E-16 103.9 6.1 48 341-392 1-48 (107)
23 3osg_A MYB21; transcription-DN 99.2 1.2E-11 4.1E-16 105.9 6.6 51 337-392 7-57 (126)
24 3zqc_A MYB3; transcription-DNA 99.2 1.4E-11 4.8E-16 106.0 6.5 48 341-392 2-49 (131)
25 2yus_A SWI/SNF-related matrix- 99.2 1.2E-11 4.1E-16 99.2 5.6 49 337-390 14-62 (79)
26 3osg_A MYB21; transcription-DN 99.2 5.2E-12 1.8E-16 108.2 3.2 68 319-392 41-108 (126)
27 2k9n_A MYB24; R2R3 domain, DNA 99.2 4.1E-12 1.4E-16 105.9 2.3 67 320-392 33-99 (107)
28 3zqc_A MYB3; transcription-DNA 99.2 6.6E-12 2.3E-16 108.0 3.2 68 319-392 33-100 (131)
29 1h89_C C-MYB, MYB proto-oncoge 99.2 1E-11 3.5E-16 109.6 4.5 90 298-392 8-105 (159)
30 1h8a_C AMV V-MYB, MYB transfor 99.1 1.3E-11 4.5E-16 105.5 3.5 68 319-392 58-125 (128)
31 2cqr_A RSGI RUH-043, DNAJ homo 99.1 6E-11 2E-15 94.1 5.7 50 339-392 16-68 (73)
32 2ltp_A Nuclear receptor corepr 98.7 1E-11 3.5E-16 101.3 0.0 50 338-392 13-62 (89)
33 1h89_C C-MYB, MYB proto-oncoge 99.0 1.2E-10 4E-15 102.9 3.2 53 335-392 104-156 (159)
34 2cjj_A Radialis; plant develop 98.9 1.6E-09 5.5E-14 89.6 5.2 47 341-391 8-57 (93)
35 1ign_A Protein (RAP1); RAP1,ye 98.8 3.5E-09 1.2E-13 100.7 4.9 51 338-392 5-60 (246)
36 2eqr_A N-COR1, N-COR, nuclear 98.7 3.9E-08 1.3E-12 74.8 6.4 52 336-392 7-58 (61)
37 2cqq_A RSGI RUH-037, DNAJ homo 98.4 1.9E-07 6.6E-12 73.7 4.8 49 339-392 6-57 (72)
38 2iw5_B Protein corest, REST co 98.2 1.7E-06 5.8E-11 81.9 5.7 49 339-392 131-179 (235)
39 1fex_A TRF2-interacting telome 98.1 3.5E-06 1.2E-10 64.0 4.6 49 341-392 2-58 (59)
40 1wgx_A KIAA1903 protein; MYB D 98.0 5.1E-06 1.8E-10 66.0 5.0 48 341-392 8-58 (73)
41 3hm5_A DNA methyltransferase 1 97.9 1E-05 3.5E-10 67.0 5.5 51 341-392 30-81 (93)
42 2ebi_A DNA binding protein GT- 97.5 2.8E-05 9.7E-10 62.1 1.8 54 339-392 2-64 (86)
43 2yqk_A Arginine-glutamic acid 97.4 0.00027 9.4E-09 53.9 6.4 49 338-390 6-54 (63)
44 2xag_B REST corepressor 1; ami 97.1 0.00046 1.6E-08 71.5 5.7 49 339-392 378-426 (482)
45 2crg_A Metastasis associated p 97.1 0.0011 3.7E-08 51.7 6.4 48 338-389 5-52 (70)
46 4eef_G F-HB80.4, designed hema 97.1 0.00015 5.2E-09 57.7 1.4 44 341-388 20-66 (74)
47 4iej_A DNA methyltransferase 1 97.0 0.00089 3.1E-08 55.4 5.8 50 341-391 30-80 (93)
48 1ug2_A 2610100B20RIK gene prod 96.6 0.0064 2.2E-07 50.3 7.6 53 336-392 28-82 (95)
49 4a69_C Nuclear receptor corepr 96.6 0.0034 1.2E-07 51.5 6.0 47 337-388 39-85 (94)
50 2lr8_A CAsp8-associated protei 95.3 0.0006 2.1E-08 53.6 0.0 48 340-392 13-62 (70)
51 4b4c_A Chromodomain-helicase-D 96.3 0.0041 1.4E-07 56.4 5.4 52 341-392 134-195 (211)
52 1irz_A ARR10-B; helix-turn-hel 95.6 0.026 9E-07 43.7 6.4 52 337-390 3-56 (64)
53 1ign_A Protein (RAP1); RAP1,ye 95.1 0.021 7.1E-07 54.5 5.1 26 363-392 173-198 (246)
54 2xb0_X Chromo domain-containin 95.0 0.014 4.6E-07 56.4 3.6 30 342-371 169-198 (270)
55 1ofc_X ISWI protein; nuclear p 94.6 0.033 1.1E-06 54.6 5.2 53 340-392 211-274 (304)
56 2y9y_A Imitation switch protei 92.3 0.11 3.8E-06 52.3 4.6 52 341-392 228-290 (374)
57 1ofc_X ISWI protein; nuclear p 83.8 1.4 4.8E-05 43.1 5.8 45 341-389 110-154 (304)
58 2xag_B REST corepressor 1; ami 80.6 0.33 1.1E-05 50.4 0.0 42 341-387 189-230 (482)
59 2juh_A Telomere binding protei 33.1 5.8 0.0002 33.9 -1.2 48 319-367 52-104 (121)
60 2i8b_A Minor nucleoprotein VP3 29.9 1.1E+02 0.0037 26.7 6.2 73 9-93 30-108 (152)
61 2y9y_A Imitation switch protei 29.3 71 0.0024 32.1 5.7 42 341-386 123-165 (374)
No 1
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.82 E-value=9.1e-21 Score=163.99 Aligned_cols=80 Identities=29% Similarity=0.519 Sum_probs=74.5
Q ss_pred ccCCCCCCccccCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHhhc
Q 016203 313 RFHLPSPKRKAVSPLKNHDVTKLARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 313 r~~lpsP~r~~vsP~~~~~~~~~~~rrkR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnllr 392 (393)
.+..|+|.+.+++|+++++.++..+++++++||+|||+.|++||++||.|+|+.|+..+++.|.+||++||||||+|++|
T Consensus 3 ~~~~~~~~~~~~~p~~k~~~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk 82 (122)
T 2roh_A 3 PFADPNSLALANVPLSRSKRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVH 82 (122)
T ss_dssp CCSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCcccccccCcccCCCcCcCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 35568999999999999988888999999999999999999999999999999999987777899999999999999985
No 2
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.71 E-value=9.8e-18 Score=141.65 Aligned_cols=60 Identities=35% Similarity=0.613 Sum_probs=54.3
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHhhcC
Q 016203 334 KLARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMRY 393 (393)
Q Consensus 334 ~~~~rrkR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnllry 393 (393)
...+++++++||+|||+.|++||++||.|+|+.|+..+++.|++||++|||||||||+++
T Consensus 6 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 6 EDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp ---CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 356789999999999999999999999999999999887788999999999999999864
No 3
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.70 E-value=1.7e-17 Score=128.25 Aligned_cols=54 Identities=44% Similarity=0.914 Sum_probs=48.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHhhcC
Q 016203 338 RRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMRY 393 (393)
Q Consensus 338 rrkR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnllry 393 (393)
..++++||+|||+.|+++|++||.++|+.|+..++ |.+||++||++||+||+|.
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~--~~~Rt~~qcr~Rw~nl~k~ 61 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYP--FVNRTAVMIKDRWRTMKRL 61 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSC--CSSCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcC--CCCCCHHHHHHHHHHHhcc
Confidence 35788999999999999999999999999999865 7799999999999999874
No 4
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.68 E-value=2.6e-17 Score=142.23 Aligned_cols=60 Identities=37% Similarity=0.685 Sum_probs=56.3
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHhhc
Q 016203 333 TKLARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 333 ~~~~~rrkR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnllr 392 (393)
+++..++++++||+|||+.|++||++||.|+|+.|+..+++.|++||++||||||+|+++
T Consensus 9 ~~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk 68 (121)
T 2juh_A 9 SELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVH 68 (121)
T ss_dssp CCCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHH
T ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 356788999999999999999999999999999999998878899999999999999986
No 5
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.65 E-value=1.6e-16 Score=117.58 Aligned_cols=52 Identities=44% Similarity=0.917 Sum_probs=47.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHhhcC
Q 016203 340 KKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMRY 393 (393)
Q Consensus 340 kR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnllry 393 (393)
++++||+|||+.|+++|++||.++|+.|+..++ |.+||++||++||+|++|+
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~--~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYK--FNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSC--CSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC--CCCCCHHHHHHHHHHHHcc
Confidence 578999999999999999999999999999833 3399999999999999986
No 6
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.65 E-value=8.7e-17 Score=130.56 Aligned_cols=51 Identities=37% Similarity=0.679 Sum_probs=48.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHhhc
Q 016203 342 KKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 342 ~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnllr 392 (393)
++||+|||+.|++||++||.|+|+.|+..++..|++||++||||||+|++|
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk 51 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVH 51 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999999999988777999999999999999986
No 7
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.63 E-value=2.8e-16 Score=121.47 Aligned_cols=53 Identities=32% Similarity=0.528 Sum_probs=49.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHhhc
Q 016203 338 RRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 338 rrkR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnllr 392 (393)
.+++++||+|||+.|++||++||. +|+.|+..|+ +|.+||+|+||||||+|.|
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~-f~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFP-FQKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSC-CCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCC-CccCcccchHHHHHHHHHh
Confidence 357999999999999999999998 9999999987 3789999999999999987
No 8
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.62 E-value=4.1e-16 Score=121.07 Aligned_cols=56 Identities=45% Similarity=0.887 Sum_probs=50.5
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHhhc
Q 016203 335 LARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 335 ~~~rrkR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnllr 392 (393)
+..++++++||+|||+.|+++|++||.++|+.|+..++ |.+||++||++||+++++
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~--~~~Rt~~qcr~Rw~~~l~ 59 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYK--FNNRTSVMLKDRWRTMKK 59 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSC--CSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcC--cCCCCHHHHHHHHHHHcC
Confidence 55778999999999999999999999999999999832 339999999999999986
No 9
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.55 E-value=5.1e-15 Score=108.62 Aligned_cols=49 Identities=37% Similarity=0.783 Sum_probs=46.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHhhc
Q 016203 340 KKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 340 kR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnllr 392 (393)
++++||+|||+.|+++|++||.++|+.|+.. |++||+.||++||+++++
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~----~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTDDWKVIANY----LPNRTDVQCQHRWQKVLN 50 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCHHHHHHT----STTCCHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHH----cCCCCHHHHHHHHHHHcC
Confidence 5889999999999999999999999999997 889999999999999985
No 10
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.53 E-value=9.7e-15 Score=107.27 Aligned_cols=49 Identities=29% Similarity=0.632 Sum_probs=46.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHhhc
Q 016203 340 KKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 340 kR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnllr 392 (393)
++++||+|||+.|+++|++||.++|..|+.. |++||+.||++||.++++
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~----~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKH----LKGRIGKQCRERWHNHLN 50 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTTCHHHHHTT----STTCCHHHHHHHHHHTTS
T ss_pred CCCCCCHHHHHHHHHHHHHHCcChHHHHHHH----cCCCCHHHHHHHHHHHcC
Confidence 5889999999999999999999899999997 889999999999999885
No 11
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.53 E-value=1.1e-14 Score=110.00 Aligned_cols=52 Identities=35% Similarity=0.710 Sum_probs=48.3
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHhhc
Q 016203 337 RRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 337 ~rrkR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnllr 392 (393)
...++++||+|||+.|+++|++||.++|..|+.. |++||+.||++||+++++
T Consensus 4 p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~----~~~Rt~~qcr~Rw~~~l~ 55 (60)
T 2d9a_A 4 GSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASH----FPNRTDQQCQYRWLRVLS 55 (60)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHH----CSSSCHHHHHHHHHHTSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHH----ccCCCHHHHHHHHHHHcC
Confidence 3467899999999999999999998899999997 889999999999999975
No 12
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=6.1e-14 Score=108.96 Aligned_cols=52 Identities=21% Similarity=0.508 Sum_probs=48.1
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHhhc
Q 016203 337 RRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 337 ~rrkR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnllr 392 (393)
...++++||+|||+.|+++|++||.++|..|+.. |++||+.||++||+++|+
T Consensus 5 ~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~----l~~Rt~~qcr~Rw~~~L~ 56 (70)
T 2dim_A 5 SSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASL----LHRKSAKQCKARWYEWLD 56 (70)
T ss_dssp SCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHH----STTCCHHHHHHHHHHTSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHH----hcCCCHHHHHHHHHHHcC
Confidence 3457899999999999999999998899999997 889999999999999875
No 13
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.45 E-value=7.5e-14 Score=105.82 Aligned_cols=51 Identities=22% Similarity=0.422 Sum_probs=47.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHhhc
Q 016203 338 RRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 338 rrkR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnllr 392 (393)
...+++||+|||+.|+++|++||.++|..|+.+ |++||+.||++||.+++.
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~----~~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQ----MCTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHH----HTTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHH----hCCCCHHHHHHHHHHHcc
Confidence 456899999999999999999998899999997 789999999999999874
No 14
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.41 E-value=1.8e-13 Score=103.30 Aligned_cols=48 Identities=27% Similarity=0.487 Sum_probs=44.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCC-CCChhHHHHHHHHhh
Q 016203 340 KKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFD-ERTEVDLKDKWRNVM 391 (393)
Q Consensus 340 kR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~-gRT~vqlKDRWRnll 391 (393)
.+++||++||+.|+++|++||.++|..|+.+ |+ +||+.||++||.++.
T Consensus 8 ~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~----~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 8 FDENWGADEELLLIDACETLGLGNWADIADY----VGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTTTCHHHHHHH----HCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHH----HCCCCCHHHHHHHHHHHc
Confidence 4778999999999999999999999999997 88 999999999999874
No 15
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.34 E-value=8.7e-13 Score=103.21 Aligned_cols=51 Identities=27% Similarity=0.588 Sum_probs=47.0
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHhhc
Q 016203 337 RRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 337 ~rrkR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnllr 392 (393)
...++++||+|||+.|+++|++||. +|..|+.+ |++||+.|||+||.++++
T Consensus 5 p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~----~~~Rt~~q~k~r~~~~l~ 55 (72)
T 2cu7_A 5 SSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKL----IGSRTVLQVKSYARQYFK 55 (72)
T ss_dssp CSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHH----HSSSCHHHHHHHHHHHHH
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHH----cCCCCHHHHHHHHHHHHH
Confidence 3457899999999999999999998 99999997 889999999999999874
No 16
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=9.5e-13 Score=101.14 Aligned_cols=51 Identities=24% Similarity=0.396 Sum_probs=46.1
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHhhc
Q 016203 336 ARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 336 ~~rrkR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnllr 392 (393)
....++++||+|||+.|+++|++||. +|..|+. |+|||+.||++||+++++
T Consensus 4 ~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-----~~gRt~~qcr~Rw~~~l~ 54 (66)
T 2din_A 4 GSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-----IIGRTAAQCLEHYEFLLD 54 (66)
T ss_dssp SSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-----HHSSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-----ccCcCHHHHHHHHHHHhC
Confidence 34567899999999999999999998 9999999 458999999999999874
No 17
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.32 E-value=1.6e-12 Score=111.15 Aligned_cols=69 Identities=22% Similarity=0.441 Sum_probs=49.1
Q ss_pred CCccccCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHhhc
Q 016203 319 PKRKAVSPLKNHDVTKLARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 319 P~r~~vsP~~~~~~~~~~~rrkR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnllr 392 (393)
|.|...++..++.. .+....++++||+|||+.|+++|++||.++|..|+.. |++||+.||++||.+++.
T Consensus 6 ~~Rt~~qC~~Rw~~-~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~----l~~Rt~~qcr~Rw~~~l~ 74 (128)
T 1h8a_C 6 KNRTDVQCQHRWQK-VLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKH----LKGRIGKQCRERWHNHLN 74 (128)
T ss_dssp -----------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHH----SSSCCHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHH-hhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHH----hcCCcHHHHHHHHHHhcc
Confidence 45566666666653 2555678899999999999999999999899999997 889999999999999874
No 18
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.32 E-value=1.3e-12 Score=103.81 Aligned_cols=52 Identities=23% Similarity=0.368 Sum_probs=46.4
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHhhc
Q 016203 335 LARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 335 ~~~rrkR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnllr 392 (393)
+..+.++++||+|||+.|+++|++||. +|+.|+.. | |||+.|||+||+.|.+
T Consensus 17 ldP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~----l-gRt~~q~knRw~~L~~ 68 (73)
T 2llk_A 17 QGDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAA----L-GRSASSVKDRCRLMKD 68 (73)
T ss_dssp --CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHH----H-TSCHHHHHHHHHHCSC
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHH----h-CCCHHHHHHHHHHHHH
Confidence 556678999999999999999999998 69999997 8 9999999999998764
No 19
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.6e-12 Score=102.12 Aligned_cols=51 Identities=16% Similarity=0.375 Sum_probs=46.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-----CChhhhhhhCCCCCCCCChhHHHHHHHHhhc
Q 016203 338 RRKKKKWSLEEEDALRKGVEQFGK-----GNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 338 rrkR~~WT~EEDe~L~~gVekyG~-----G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnllr 392 (393)
...+++||+|||+.|+++|++||. ++|..|+.+ |++||+.||++||+++++
T Consensus 5 ~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~----~~~Rt~~qcr~r~~~~l~ 60 (75)
T 2yum_A 5 SSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADE----LGNRTAKQVASQVQKYFI 60 (75)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHH----HSSSCHHHHHHHHHHHHG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHH----hCCCCHHHHHHHHHHHHH
Confidence 346889999999999999999996 689999997 889999999999988764
No 20
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.26 E-value=5.2e-12 Score=104.32 Aligned_cols=49 Identities=27% Similarity=0.618 Sum_probs=46.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHhhc
Q 016203 340 KKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 340 kR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnllr 392 (393)
++++||+|||+.|+++|++||.++|..|+.. |++||+.||++||++++.
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~----l~~Rt~~qcr~Rw~~~l~ 51 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKH----LKGRIGKQCRERWHNHLN 51 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTTCHHHHHTT----STTCCHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcHHHHhhh----hcCCCHHHHHHHHHhccC
Confidence 5889999999999999999999999999996 889999999999999864
No 21
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.24 E-value=2.9e-12 Score=105.86 Aligned_cols=67 Identities=25% Similarity=0.467 Sum_probs=54.1
Q ss_pred CccccCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHhhc
Q 016203 320 KRKAVSPLKNHDVTKLARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 320 ~r~~vsP~~~~~~~~~~~rrkR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnllr 392 (393)
.|....+..++.+ .+....++++||+|||+.|+++|.+||. +|..|+.. |+|||+.||++||++++|
T Consensus 36 ~Rt~~qcr~Rw~~-~l~p~~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~----l~gRt~~~~k~rw~~~~~ 102 (105)
T 1gv2_A 36 GRIGKQCRERWHN-HLNPEVKKTSWTEEEDRIIYQAHKRLGN-RWAEIAKL----LPGRTDNAIKNHWNSTMR 102 (105)
T ss_dssp TCCHHHHHHHHHH-TTCCCCCCCCCCHHHHHHHHHHHHHHSS-CHHHHHTT----CTTCCHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHh-ccCCcccccCCCHHHHHHHHHHHHHhCC-CHHHHHHH----cCCCCHHHHHHHHHHHHh
Confidence 4444444444432 2445567899999999999999999996 99999996 889999999999999886
No 22
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.23 E-value=8.6e-12 Score=103.89 Aligned_cols=48 Identities=25% Similarity=0.484 Sum_probs=45.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHhhc
Q 016203 341 KKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 341 R~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnllr 392 (393)
+++||+|||+.|+++|++||.++|..|+.. |++||+.||++||.+++.
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~----~~~Rt~~qcr~Rw~~~L~ 48 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQL----MITRNPRQCRERWNNYIN 48 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHH----TTTSCHHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhh----cCCCCHHHHHHHHHHHHc
Confidence 578999999999999999999999999997 889999999999999874
No 23
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.22 E-value=1.2e-11 Score=105.90 Aligned_cols=51 Identities=33% Similarity=0.771 Sum_probs=47.2
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHhhc
Q 016203 337 RRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 337 ~rrkR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnllr 392 (393)
+..++++||+|||+.|+++|++||. +|..|+.. |++||+.||++||++++.
T Consensus 7 ~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~----~~~Rt~~qcr~Rw~~~l~ 57 (126)
T 3osg_A 7 KAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAAT----FPNRNARQCRDRWKNYLA 57 (126)
T ss_dssp CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHT----CTTCCHHHHHHHHHHHTS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHH----cCCCCHHHHHHHHhhhcc
Confidence 4567999999999999999999998 99999996 889999999999999874
No 24
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.21 E-value=1.4e-11 Score=105.98 Aligned_cols=48 Identities=25% Similarity=0.492 Sum_probs=45.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHhhc
Q 016203 341 KKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 341 R~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnllr 392 (393)
+++||+|||+.|+.+|++||.++|..|+.. |++||+.||++||++++.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~----~~~Rt~~qcr~Rw~~~l~ 49 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSF----LPNRSPKQCRERWFNHLD 49 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTS----CTTSCHHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHH----HCCCCHHHHHHHHhhccC
Confidence 689999999999999999999999999996 889999999999999874
No 25
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.21 E-value=1.2e-11 Score=99.23 Aligned_cols=49 Identities=14% Similarity=0.329 Sum_probs=45.4
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHh
Q 016203 337 RRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNV 390 (393)
Q Consensus 337 ~rrkR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnl 390 (393)
.+..+.+||+|||+.|+++|++|| ++|..|+.+ +++||..||+.||.++
T Consensus 14 ~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~----v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 14 GASAGREWTEQETLLLLEALEMYK-DDWNKVSEH----VGSRTQDECILHFLRL 62 (79)
T ss_dssp SSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHH----HSSCCHHHHHHHHTTS
T ss_pred ccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHH----cCCCCHHHHHHHHHHh
Confidence 445688999999999999999999 799999997 7899999999999987
No 26
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.20 E-value=5.2e-12 Score=108.16 Aligned_cols=68 Identities=26% Similarity=0.587 Sum_probs=55.5
Q ss_pred CCccccCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHhhc
Q 016203 319 PKRKAVSPLKNHDVTKLARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 319 P~r~~vsP~~~~~~~~~~~rrkR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnllr 392 (393)
|.|...++..++.+ .+....++++||+|||+.|+++|.+||. +|+.|+.. |+|||+.||++||+++++
T Consensus 41 ~~Rt~~qcr~Rw~~-~l~p~~~~~~WT~eEd~~L~~~v~~~G~-~W~~Ia~~----l~gRt~~~~k~rw~~l~~ 108 (126)
T 3osg_A 41 PNRNARQCRDRWKN-YLAPSISHTPWTAEEDALLVQKIQEYGR-QWAIIAKF----FPGRTDIHIKNRWVTISN 108 (126)
T ss_dssp TTCCHHHHHHHHHH-HTSTTSCCSCCCHHHHHHHHHHHHHHCS-CHHHHHTT----STTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhh-hcccccccccCCHHHHHHHHHHHHHHCc-CHHHHHHH----cCCCCHHHHHHHHHHHHH
Confidence 34554555555543 2556678899999999999999999996 99999996 889999999999999875
No 27
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.19 E-value=4.1e-12 Score=105.85 Aligned_cols=67 Identities=19% Similarity=0.452 Sum_probs=53.9
Q ss_pred CccccCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHhhc
Q 016203 320 KRKAVSPLKNHDVTKLARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 320 ~r~~vsP~~~~~~~~~~~rrkR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnllr 392 (393)
.|...++..++.+ .+....++++||+|||+.|+.+|.+||. +|..|+.. |+|||+.||++||+.+++
T Consensus 33 ~Rt~~qcr~Rw~~-~L~p~i~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~----l~gRt~~~~k~rw~~l~r 99 (107)
T 2k9n_A 33 TRNPRQCRERWNN-YINPALRTDPWSPEEDMLLDQKYAEYGP-KWNKISKF----LKNRSDNNIRNRWMMIAR 99 (107)
T ss_dssp TSCHHHHHHHHHH-HSSSCCTTCCCCHHHHHHHHHHHHHTCS-CHHHHHHH----HSSSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH-HHcccccccccCHHHHHHHHHHHHHhCc-CHHHHHHH----CCCCCHHHHHHHHHHHHh
Confidence 3444444444432 2445567899999999999999999997 99999997 889999999999999875
No 28
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.18 E-value=6.6e-12 Score=108.04 Aligned_cols=68 Identities=22% Similarity=0.462 Sum_probs=55.8
Q ss_pred CCccccCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHhhc
Q 016203 319 PKRKAVSPLKNHDVTKLARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 319 P~r~~vsP~~~~~~~~~~~rrkR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnllr 392 (393)
|.|...++..++.+ .+....++++||+|||+.|+++|.+||. +|+.|+.. |+|||+.||++||+++++
T Consensus 33 ~~Rt~~qcr~Rw~~-~l~p~~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~----l~gRt~~~~k~rw~~~l~ 100 (131)
T 3zqc_A 33 PNRSPKQCRERWFN-HLDPAVVKHAWTPEEDETIFRNYLKLGS-KWSVIAKL----IPGRTDNAIKNRWNSSIS 100 (131)
T ss_dssp TTSCHHHHHHHHHH-HTSTTCCCSCCCHHHHHHHHHHHHHSCS-CHHHHTTT----STTCCHHHHHHHHHHTTG
T ss_pred CCCCHHHHHHHHhh-ccCccccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHH----cCCCCHHHHHHHHHHHHH
Confidence 44555555555543 2555677899999999999999999996 99999996 889999999999999875
No 29
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.18 E-value=1e-11 Score=109.63 Aligned_cols=90 Identities=22% Similarity=0.410 Sum_probs=53.8
Q ss_pred eeccCCCCCCCCCCcc--------cCCCCCCccccCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhh
Q 016203 298 EWDDSIDEEPSNQGNR--------FHLPSPKRKAVSPLKNHDVTKLARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILK 369 (393)
Q Consensus 298 eWddS~D~~~~~~~~r--------~~lpsP~r~~vsP~~~~~~~~~~~rrkR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~ 369 (393)
.|+..+|......+.. |..-.|.|...++..++.+ .+....++++||+|||+.|+.+|++||.++|..|+.
T Consensus 8 ~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~-~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~ 86 (159)
T 1h89_C 8 RWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQK-VLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAK 86 (159)
T ss_dssp -----------------------------------CHHHHHHT-TTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHH-ccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHH
Confidence 5777777655222211 1112235555555555543 255667899999999999999999999989999999
Q ss_pred hCCCCCCCCChhHHHHHHHHhhc
Q 016203 370 SNPGAFDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 370 ~~~~~f~gRT~vqlKDRWRnllr 392 (393)
. |++||+.||++||.++++
T Consensus 87 ~----l~~Rt~~qcr~Rw~~~l~ 105 (159)
T 1h89_C 87 H----LKGRIGKQCRERWHNHLN 105 (159)
T ss_dssp T----STTCCHHHHHHHHHHTTC
T ss_pred H----cCCCCHHHHHHHHHHHhC
Confidence 6 889999999999999874
No 30
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.15 E-value=1.3e-11 Score=105.48 Aligned_cols=68 Identities=25% Similarity=0.452 Sum_probs=55.2
Q ss_pred CCccccCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHhhc
Q 016203 319 PKRKAVSPLKNHDVTKLARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 319 P~r~~vsP~~~~~~~~~~~rrkR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnllr 392 (393)
|.|....+..++.+ .+....++++||+|||+.|+++|++||. +|+.|+.. |+|||+.||++||+.++|
T Consensus 58 ~~Rt~~qcr~Rw~~-~l~p~~~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~----l~gRt~~~~k~r~~~~~~ 125 (128)
T 1h8a_C 58 KGRIGKQCRERWHN-HLNPEVKKTSWTEEEDRIIYQAHKRLGN-RWAEIAKL----LPGRTDNAVKNHWNSTMR 125 (128)
T ss_dssp SSCCHHHHHHHHHH-TTCSSSCCSCCCHHHHHHHHHHHHHHCS-CHHHHGGG----STTCCHHHHHHHHHTTTT
T ss_pred cCCcHHHHHHHHHH-hcccccccccCCHHHHHHHHHHHHHHCc-CHHHHHHH----CCCCCHHHHHHHHHHHHh
Confidence 34444444444432 2556678999999999999999999997 99999997 889999999999999876
No 31
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.12 E-value=6e-11 Score=94.11 Aligned_cols=50 Identities=12% Similarity=0.429 Sum_probs=45.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC---CChhhhhhhCCCCCCCCChhHHHHHHHHhhc
Q 016203 339 RKKKKWSLEEEDALRKGVEQFGK---GNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 339 rkR~~WT~EEDe~L~~gVekyG~---G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnllr 392 (393)
..+.+||.+||++|+.++.+||. .+|.+|+.+ |+|||..||++||.+|++
T Consensus 16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~----vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARC----VPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGG----CSSSCHHHHHHHHHHHHS
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHH----cCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999993 589999997 889999999999999874
No 32
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.68 E-value=1e-11 Score=101.29 Aligned_cols=50 Identities=24% Similarity=0.422 Sum_probs=46.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHhhc
Q 016203 338 RRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 338 rrkR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnllr 392 (393)
..++++||+|||+.|+++|++||. +|..|+.. |+|||+.||++||.++++
T Consensus 13 ~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~----l~gRt~~q~k~r~~~~lr 62 (89)
T 2ltp_A 13 NLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARM----VGSKTVSQCKNFYFNYKK 62 (89)
Confidence 346899999999999999999998 89999996 889999999999999875
No 33
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.00 E-value=1.2e-10 Score=102.85 Aligned_cols=53 Identities=30% Similarity=0.623 Sum_probs=48.4
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHhhc
Q 016203 335 LARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 335 ~~~rrkR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnllr 392 (393)
+....++++||++||+.|+++|.+||. +|..|+.. |+|||+.||++||+.++|
T Consensus 104 l~p~~~~~~WT~eEd~~L~~~~~~~g~-~W~~Ia~~----l~gRt~~~~knr~~~~~r 156 (159)
T 1h89_C 104 LNPEVKKTSWTEEEDRIIYQAHKRLGN-RWAEIAKL----LPGRTDNAIKNHWNSTMR 156 (159)
T ss_dssp TCTTSCCSCCCHHHHHHHHHHHHHHCS-CHHHHHTT----STTCCHHHHHHHHHTTTC
T ss_pred hCccccccCCChHHHHHHHHHHHHHCC-CHHHHHHH----CCCCCHHHHHHHHHHHHh
Confidence 445567899999999999999999997 99999996 899999999999999876
No 34
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.87 E-value=1.6e-09 Score=89.56 Aligned_cols=47 Identities=17% Similarity=0.518 Sum_probs=43.4
Q ss_pred CCCCCHHHHHHHHHHHHHhC---CCChhhhhhhCCCCCCCCChhHHHHHHHHhh
Q 016203 341 KKKWSLEEEDALRKGVEQFG---KGNWKLILKSNPGAFDERTEVDLKDKWRNVM 391 (393)
Q Consensus 341 R~~WT~EEDe~L~~gVekyG---~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnll 391 (393)
+.+||.|||+.|++++.+|| ..+|.+|+.+ |+|||..||++||.+++
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~----vpGRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARA----VEGRTPEEVKKHYEILV 57 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHH----STTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHH----cCCCCHHHHHHHHHHHH
Confidence 67899999999999999998 4579999998 88999999999999985
No 35
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.78 E-value=3.5e-09 Score=100.71 Aligned_cols=51 Identities=14% Similarity=0.216 Sum_probs=44.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCC-----hhhhhhhCCCCCCCCChhHHHHHHHHhhc
Q 016203 338 RRKKKKWSLEEEDALRKGVEQFGKGN-----WKLILKSNPGAFDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 338 rrkR~~WT~EEDe~L~~gVekyG~G~-----Wk~Ia~~~~~~f~gRT~vqlKDRWRnllr 392 (393)
..++.+||+|||+.|+++|++||..+ |..|+.. |+|||+.|||+||+++|+
T Consensus 5 ~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~----LpGRT~nsIRnRw~~~L~ 60 (246)
T 1ign_A 5 SHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHY----VPNHTGNSIRHRFRVYLS 60 (246)
T ss_dssp ---CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTT----STTSCHHHHHHHHHHTTG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHH----cCCCCHHHHHHHHHHHHh
Confidence 34688999999999999999999743 9999996 899999999999999876
No 36
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=3.9e-08 Score=74.75 Aligned_cols=52 Identities=17% Similarity=0.247 Sum_probs=46.4
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHhhc
Q 016203 336 ARRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 336 ~~rrkR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnllr 392 (393)
..|+...+||++|++.+.+++.+||. +|..|+.. +++||..||..+|....|
T Consensus 7 ~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~----l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 7 GDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIASY----LERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHH----CTTSCHHHHHHHHHHHTC
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHH----cCCCCHHHHHHHHHHhcC
Confidence 35667899999999999999999996 99999986 889999999999987654
No 37
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.42 E-value=1.9e-07 Score=73.69 Aligned_cols=49 Identities=20% Similarity=0.457 Sum_probs=43.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC---CChhhhhhhCCCCCCCCChhHHHHHHHHhhc
Q 016203 339 RKKKKWSLEEEDALRKGVEQFGK---GNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 339 rkR~~WT~EEDe~L~~gVekyG~---G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnllr 392 (393)
.+...||.||++.|..++.+|+. .+|.+|+.. + |||..||+.||+.|.+
T Consensus 6 ~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~----l-gRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 6 SGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHE----L-GRSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHH----H-TSCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHH----h-CCCHHHHHHHHHHHHH
Confidence 34778999999999999999984 579999996 5 8999999999998853
No 38
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.16 E-value=1.7e-06 Score=81.85 Aligned_cols=49 Identities=18% Similarity=0.454 Sum_probs=45.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHhhc
Q 016203 339 RKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 339 rkR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnllr 392 (393)
+...+||++|.+.+++++.+||. +|..|+.. +++||..||++.|.++.|
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~----VgTKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDV----IGNKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHH----HSSCCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHH----cCCCCHHHHHHHHHHHHH
Confidence 45889999999999999999997 99999997 789999999999998764
No 39
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.06 E-value=3.5e-06 Score=64.01 Aligned_cols=49 Identities=22% Similarity=0.387 Sum_probs=43.5
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCChhhhhhhCCCCCCCCChhHHHHHHHHhhc
Q 016203 341 KKKWSLEEEDALRKGVEQF--------GKGNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 341 R~~WT~EEDe~L~~gVeky--------G~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnllr 392 (393)
|.+||.|||..|++.|.+| |..-|+.++.. .++++|-.+|+|||++.++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~---~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKS---SLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHS---CSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHh---HCCCCCHHHHHHHHHHHcc
Confidence 6799999999999999999 55569999992 2679999999999999876
No 40
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.02 E-value=5.1e-06 Score=65.99 Aligned_cols=48 Identities=21% Similarity=0.395 Sum_probs=43.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CChhhhhhhCCCCCCCCChhHHHHHHHHhhc
Q 016203 341 KKKWSLEEEDALRKGVEQFGK---GNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 341 R~~WT~EEDe~L~~gVekyG~---G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnllr 392 (393)
...||.+|+.+|..++..|+. ++|.+|+.. +++||..+|+.||..+++
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~----V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAA----VGSRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHH----TTTSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHH----cCCCCHHHHHHHHHHHHh
Confidence 457999999999999999985 689999997 889999999999998754
No 41
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.93 E-value=1e-05 Score=67.03 Aligned_cols=51 Identities=22% Similarity=0.400 Sum_probs=43.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhhhhCC-CCCCCCChhHHHHHHHHhhc
Q 016203 341 KKKWSLEEEDALRKGVEQFGKGNWKLILKSNP-GAFDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 341 R~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~-~~f~gRT~vqlKDRWRnllr 392 (393)
..+||.||+..|.+++++||. +|..|+..|. ..+++||..+||+||..+.+
T Consensus 30 ~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~ 81 (93)
T 3hm5_A 30 DDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence 389999999999999999997 9999999862 12358999999999987653
No 42
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.51 E-value=2.8e-05 Score=62.08 Aligned_cols=54 Identities=20% Similarity=0.345 Sum_probs=40.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC----C-----CChhhhhhhCCCCCCCCChhHHHHHHHHhhc
Q 016203 339 RKKKKWSLEEEDALRKGVEQFG----K-----GNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 339 rkR~~WT~EEDe~L~~gVekyG----~-----G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnllr 392 (393)
++...||.+|...|+.+...+. . ..|..|+..-...--.||+.||++||.||.+
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k 64 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLK 64 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999997532 1 2599998761000017999999999999975
No 43
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.43 E-value=0.00027 Score=53.93 Aligned_cols=49 Identities=24% Similarity=0.355 Sum_probs=42.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHh
Q 016203 338 RRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNV 390 (393)
Q Consensus 338 rrkR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnl 390 (393)
+.+...||++|-+.+.+++.+||. +|..|+.+ ++++||..||..-|-..
T Consensus 6 ~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~---~v~~Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 6 SGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKE---LLPNKETGELITFYYYW 54 (63)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHH---SCTTSCHHHHHHHHHHH
T ss_pred CcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHH---HcCCCcHHHHHHHHhcc
Confidence 345789999999999999999998 99999984 27899999999876544
No 44
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.09 E-value=0.00046 Score=71.46 Aligned_cols=49 Identities=18% Similarity=0.454 Sum_probs=44.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHHhhc
Q 016203 339 RKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 339 rkR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnllr 392 (393)
+...+||.+|-+.+++|+.+||. +|..|+.. +..||..||+..|.++.+
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~----VgTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDV----IGNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHH----HSSCCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHH----hCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999997 99999997 779999999999987654
No 45
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.08 E-value=0.0011 Score=51.73 Aligned_cols=48 Identities=15% Similarity=0.310 Sum_probs=41.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHH
Q 016203 338 RRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRN 389 (393)
Q Consensus 338 rrkR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRn 389 (393)
|.....||++|-+.+.+++.+||. +|..|+.. .+++||..||..-|-.
T Consensus 5 r~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~---~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 5 SSGMEEWSASEACLFEEALEKYGK-DFNDIRQD---FLPWKSLTSIIEYYYM 52 (70)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTCS-CHHHHHHT---TCSSSCHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCc-cHHHHHHH---HcCCCCHHHHHHHHHh
Confidence 456789999999999999999998 99999983 2789999999987654
No 46
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.05 E-value=0.00015 Score=57.73 Aligned_cols=44 Identities=20% Similarity=0.435 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC---ChhhhhhhCCCCCCCCChhHHHHHHH
Q 016203 341 KKKWSLEEEDALRKGVEQFGKG---NWKLILKSNPGAFDERTEVDLKDKWR 388 (393)
Q Consensus 341 R~~WT~EEDe~L~~gVekyG~G---~Wk~Ia~~~~~~f~gRT~vqlKDRWR 388 (393)
...||.+|+++|..++.+|+.+ +|.+|+.. ++|||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~----VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQY----VKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGG----SCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHH----cCCCCHHHHHHHHH
Confidence 5689999999999999999865 89999997 88999999998764
No 47
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.03 E-value=0.00089 Score=55.45 Aligned_cols=50 Identities=22% Similarity=0.412 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhhhhCC-CCCCCCChhHHHHHHHHhh
Q 016203 341 KKKWSLEEEDALRKGVEQFGKGNWKLILKSNP-GAFDERTEVDLKDKWRNVM 391 (393)
Q Consensus 341 R~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~-~~f~gRT~vqlKDRWRnll 391 (393)
...||.||...|.+++++|+. +|--|...|. ..+.+||-.|||+||-.+.
T Consensus 30 ~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 468999999999999999996 9999999863 1245899999999997654
No 48
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.59 E-value=0.0064 Score=50.32 Aligned_cols=53 Identities=17% Similarity=0.414 Sum_probs=46.9
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhCC--CChhhhhhhCCCCCCCCChhHHHHHHHHhhc
Q 016203 336 ARRRKKKKWSLEEEDALRKGVEQFGK--GNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 336 ~~rrkR~~WT~EEDe~L~~gVekyG~--G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnllr 392 (393)
....+--.||.+||..++..+++-|. ..|..|+.. +.+|++.|+++||+.|++
T Consensus 28 s~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~----L~Nks~nqV~~RFq~Lm~ 82 (95)
T 1ug2_A 28 STGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQ----LGNKTPVEVSHRFRELMQ 82 (95)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHH----HSSCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHH----HccCCHHHHHHHHHHHHH
Confidence 34456788999999999999999996 579999997 779999999999999876
No 49
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.58 E-value=0.0034 Score=51.51 Aligned_cols=47 Identities=23% Similarity=0.351 Sum_probs=41.1
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHH
Q 016203 337 RRRKKKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWR 388 (393)
Q Consensus 337 ~rrkR~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWR 388 (393)
.+.....||++|-+.+.++..+||. +|..|+.. +++||..||-.-|-
T Consensus 39 ~r~~~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~----l~~Kt~~~cV~~YY 85 (94)
T 4a69_C 39 DRQVMNMWSEQEKETFREKFMQHPK-NFGLIASF----LERKTVAECVLYYY 85 (94)
T ss_dssp HHHHTCCCCHHHHHHHHHHHHHSTT-CHHHHHHT----CTTCCHHHHHHHHH
T ss_pred ccCCCCCCCHHHHHHHHHHHHHcCC-CHHHHHHH----cCCCCHHHHHHHHh
Confidence 3456789999999999999999997 99999875 88999999987654
No 50
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.34 E-value=0.0006 Score=53.64 Aligned_cols=48 Identities=6% Similarity=0.326 Sum_probs=43.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC--CChhhhhhhCCCCCCCCChhHHHHHHHHhhc
Q 016203 340 KKKKWSLEEEDALRKGVEQFGK--GNWKLILKSNPGAFDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 340 kR~~WT~EEDe~L~~gVekyG~--G~Wk~Ia~~~~~~f~gRT~vqlKDRWRnllr 392 (393)
.--.||.|||..|+..+++-|. ..|..|+.. + +||+.|+++||+.|++
T Consensus 13 ~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~----L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 13 IIILWTRNDDRVILLECQKRGPSSKTFAYLAAK----L-DKNPNQVSERFQQLMK 62 (70)
Confidence 4568999999999999999996 579999985 6 8999999999999876
No 51
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.31 E-value=0.0041 Score=56.38 Aligned_cols=52 Identities=17% Similarity=0.473 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhhhhCC-----CCC-----CCCChhHHHHHHHHhhc
Q 016203 341 KKKWSLEEEDALRKGVEQFGKGNWKLILKSNP-----GAF-----DERTEVDLKDKWRNVMR 392 (393)
Q Consensus 341 R~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~-----~~f-----~gRT~vqlKDRWRnllr 392 (393)
...||.+||..|+.||.+||.|+|..|..... .+| ..++.+.|..|-..|++
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~ 195 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIK 195 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHH
Confidence 45699999999999999999999999988631 111 25677889999766654
No 52
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=95.64 E-value=0.026 Score=43.67 Aligned_cols=52 Identities=17% Similarity=0.282 Sum_probs=42.8
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhCCC--ChhhhhhhCCCCCCCCChhHHHHHHHHh
Q 016203 337 RRRKKKKWSLEEEDALRKGVEQFGKG--NWKLILKSNPGAFDERTEVDLKDKWRNV 390 (393)
Q Consensus 337 ~rrkR~~WT~EEDe~L~~gVekyG~G--~Wk~Ia~~~~~~f~gRT~vqlKDRWRnl 390 (393)
.+++|..||+|.-+.++++|+++|.. .|+.|...-. .+|.|-.+++.+.+.|
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~--v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMN--VDKLTRENVASHLQKF 56 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHC--CTTCCHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcC--CCCCCHHHHHHHHHHH
Confidence 46789999999999999999999953 3889988622 3589999999876665
No 53
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=95.08 E-value=0.021 Score=54.54 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=23.8
Q ss_pred ChhhhhhhCCCCCCCCChhHHHHHHHHhhc
Q 016203 363 NWKLILKSNPGAFDERTEVDLKDKWRNVMR 392 (393)
Q Consensus 363 ~Wk~Ia~~~~~~f~gRT~vqlKDRWRnllr 392 (393)
.|+.|+.. |++||.+..||||+++++
T Consensus 173 ~fk~ia~~----~P~HT~~SWRdRyrKfl~ 198 (246)
T 1ign_A 173 FFKHFAEE----HAAHTENAWRDRFRKFLL 198 (246)
T ss_dssp HHHHHHHH----TTTSCHHHHHHHHHHTHH
T ss_pred HHHHHHHH----CCCCChhhHHHHHHHHHh
Confidence 79999998 889999999999998764
No 54
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=94.99 E-value=0.014 Score=56.45 Aligned_cols=30 Identities=33% Similarity=0.730 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhhhhC
Q 016203 342 KKWSLEEEDALRKGVEQFGKGNWKLILKSN 371 (393)
Q Consensus 342 ~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~ 371 (393)
..|+.+||..|+.||.+||.|+|..|....
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~Dp 198 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRDDP 198 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHCT
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhcCc
Confidence 579999999999999999999999998763
No 55
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=94.59 E-value=0.033 Score=54.63 Aligned_cols=53 Identities=17% Similarity=0.258 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---CChhhhhhh-------CCCCC-CCCChhHHHHHHHHhhc
Q 016203 340 KKKKWSLEEEDALRKGVEQFGK---GNWKLILKS-------NPGAF-DERTEVDLKDKWRNVMR 392 (393)
Q Consensus 340 kR~~WT~EEDe~L~~gVekyG~---G~Wk~Ia~~-------~~~~f-~gRT~vqlKDRWRnllr 392 (393)
+.+.||.+||..|+-++.+||. |+|..|... .+|.| ..||+.+|..|=..|++
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~ 274 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLIT 274 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHH
Confidence 4568999999999999999999 999999632 12222 49999999999888765
No 56
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=92.27 E-value=0.11 Score=52.32 Aligned_cols=52 Identities=19% Similarity=0.339 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CChhhhhhh-------CCCCC-CCCChhHHHHHHHHhhc
Q 016203 341 KKKWSLEEEDALRKGVEQFGK---GNWKLILKS-------NPGAF-DERTEVDLKDKWRNVMR 392 (393)
Q Consensus 341 R~~WT~EEDe~L~~gVekyG~---G~Wk~Ia~~-------~~~~f-~gRT~vqlKDRWRnllr 392 (393)
.+.||.+||..|+-++.+||. |+|..|... .+|.| ..||+..|..|=..|++
T Consensus 228 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~ 290 (374)
T 2y9y_A 228 KRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQ 290 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHH
Confidence 558999999999999999999 999999544 12222 49999999999888765
No 57
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=83.80 E-value=1.4 Score=43.15 Aligned_cols=45 Identities=16% Similarity=0.281 Sum_probs=39.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHHHH
Q 016203 341 KKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKWRN 389 (393)
Q Consensus 341 R~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRWRn 389 (393)
-..||..+-..++.++.+||..+|..|+.. +.|.|..+++.-...
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~e----v~~Kt~eEV~~Y~~v 154 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKD----VEGKTPEEVIEYNAV 154 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTS----STTCCHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHH----hcCCCHHHHHHHHHH
Confidence 457999999999999999999999999997 779999999765443
No 58
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=80.57 E-value=0.33 Score=50.37 Aligned_cols=42 Identities=14% Similarity=0.386 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCCCCChhHHHHHH
Q 016203 341 KKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFDERTEVDLKDKW 387 (393)
Q Consensus 341 R~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~gRT~vqlKDRW 387 (393)
...||++|...+.+++.+||. +|..|+.+ |++||..+|-.-|
T Consensus 189 ~d~WT~eE~~lFe~al~~yGK-dF~~I~~~----lp~Ksv~e~V~yY 230 (482)
T 2xag_B 189 PDEWTVEDKVLFEQAFSFHGK-TFHRIQQM----LPDKSIASLVKFY 230 (482)
T ss_dssp -----------------------------------------------
T ss_pred ccccCHHHHHHHHHHHHHcCc-cHHHHHHH----cCCCCHHHHHHHh
Confidence 348999999999999999997 99999975 8899999987553
No 59
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=33.07 E-value=5.8 Score=33.95 Aligned_cols=48 Identities=8% Similarity=0.022 Sum_probs=34.0
Q ss_pred CCccccCCCCCCCccc----cccCCCCC-CCCHHHHHHHHHHHHHhCCCChhhh
Q 016203 319 PKRKAVSPLKNHDVTK----LARRRKKK-KWSLEEEDALRKGVEQFGKGNWKLI 367 (393)
Q Consensus 319 P~r~~vsP~~~~~~~~----~~~rrkR~-~WT~EEDe~L~~gVekyG~G~Wk~I 367 (393)
+.|+.+....++++.. .....+++ +|+++|+..|+.+..+||. +|.+-
T Consensus 52 ~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv~~~h~~~gn-~~~~~ 104 (121)
T 2juh_A 52 DHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAYWSQ-QQGKQ 104 (121)
T ss_dssp SSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHHHHHHHHHHH-HHCCS
T ss_pred CCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHHHHHHHHHcc-chhcc
Confidence 5677776666665421 11333445 9999999999999999996 88763
No 60
>2i8b_A Minor nucleoprotein VP30; VP30 ebola virus protein, transcription, RNA binding, viral; HET: MSE; 2.00A {Zaire ebolavirus}
Probab=29.89 E-value=1.1e+02 Score=26.73 Aligned_cols=73 Identities=19% Similarity=0.246 Sum_probs=50.3
Q ss_pred HHHHhhc---CCCcHHHHHHHHh--hcCCCCCCchhHHHHHHHHHHHhhhccCCCCCc-cHHHHHHHHHhhhcCccccch
Q 016203 9 VIEFLLR---NSPSDQLINRILA--IIPISNNNNFRLKKTLLLRSIQSQLSSDGDASL-SKTILENLKAVRDLDEKEGIA 82 (393)
Q Consensus 9 ilef~l~---~~i~~~~~~~ll~--~lP~~~~~~pRlkk~llLR~l~~~l~~~~~~~~-se~~L~~le~l~e~d~~e~~~ 82 (393)
|+||..+ ..|.++-+.++|+ ++= +..+-|..|=-.-+++|.-++=|-. ++.+||.-..|- + -
T Consensus 30 ~ae~w~~~di~~idds~LRAlLtL~av~-----~RKfskSql~~lcE~Hlr~E~LgQDQ~~~vlevYqrlH---s----D 97 (152)
T 2i8b_A 30 TAEHWARQDIRTIEDSKLRALLTLCAVM-----TRKFSKSQLSLLCETHLRREGLGQDQAEPVLEVYQRLH---S----D 97 (152)
T ss_dssp HHHHHHTSCCTTCCHHHHHHHHHHHHHH-----HHHSCHHHHHHHHHHHHTCTTCCGGGHHHHHHHHHHHH---T----C
T ss_pred HHHHHHHhhhccccHHHHHHHHHHHHHH-----HHHhhHHHHHHHHHHHhhhccCCcccchHHHHHHHHHh---c----c
Confidence 6889998 7788888888887 322 2233355555556778876666666 788888777642 2 2
Q ss_pred hhHHHHHHHHH
Q 016203 83 ITRSMEAAIRD 93 (393)
Q Consensus 83 ~~d~~~aA~~~ 93 (393)
-.-+||||+|-
T Consensus 98 KGG~FEAALWQ 108 (152)
T 2i8b_A 98 KGGSFEAALWQ 108 (152)
T ss_dssp SSSHHHHHHHH
T ss_pred cCccHHHHHHh
Confidence 24589999997
No 61
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=29.26 E-value=71 Score=32.12 Aligned_cols=42 Identities=12% Similarity=0.232 Sum_probs=37.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhhhhCCCCCC-CCChhHHHHH
Q 016203 341 KKKWSLEEEDALRKGVEQFGKGNWKLILKSNPGAFD-ERTEVDLKDK 386 (393)
Q Consensus 341 R~~WT~EEDe~L~~gVekyG~G~Wk~Ia~~~~~~f~-gRT~vqlKDR 386 (393)
-..||.-+=..++.++++||..+-..|+.. +. +.|..+++.-
T Consensus 123 F~~WnrrDF~~FI~a~~kyGR~d~~~IA~e----v~~~Kt~eEV~~Y 165 (374)
T 2y9y_A 123 FTNWNKLEFRKFITVSGKYGRNSIQAIARE----LAPGKTLEEVRAY 165 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHCTTCHHHHHSS----CCCSSSHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHhHHHHHHHH----HccCCCHHHHHHH
Confidence 567999999999999999999999999997 55 8999999843
Done!