BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016204
(393 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CFS|A Chain A, Crystal Structure Of Human Pyridoxal 5'-Phosphate
Phosphatase
pdb|2CFT|A Chain A, Crystal Structure Of Human Pyridoxal 5'-Phosphate
Phosphatase With Its Substrate
Length = 298
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTID-KLKSLGF 87
R + L D GVL +G++ PGA LE LA G + +SN+SRRA + + LGF
Sbjct: 20 RAQGVLFDCDGVLWNGERAVPGAPELLERLARAGKAALFVSNNSRRARPELALRFARLGF 79
Query: 88 D----PSLFAGAITSGELTHQYLLRRDDA 112
LF+ A+ + L Q L DA
Sbjct: 80 GGLRAEQLFSSALCAARLLRQRLPGPPDA 108
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 288 GTLASKFEKLGG-EVRWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQ 346
G+LA+ E G + +GKP +++ +D ++ VGD L DI + G+
Sbjct: 196 GSLAAAVETASGRQALVVGKPSPYMFECITENFSIDPARTLMVGDRLETDILFGHRCGMT 255
Query: 347 SVFIIGGIHATE 358
+V + G+ E
Sbjct: 256 TVLTLTGVSRLE 267
>pdb|2CFR|A Chain A, Crystal Structure Of Human Pyridoxal 5'-Phosphate
Phosphatase
Length = 298
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTID-KLKSLGF 87
R + L D GVL +G++ PGA LE LA G + +SN+SRRA + + LGF
Sbjct: 20 RAQGVLFDCDGVLWNGERAVPGAPELLERLARAGKAALFVSNNSRRARPELALRFARLGF 79
Query: 88 D----PSLFAGAITSGELTHQYLLRRDDA 112
LF+ A+ + L Q L DA
Sbjct: 80 GGLRAEQLFSSALCAARLLRQRLPGPPDA 108
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 288 GTLASKFEKLGG-EVRWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQ 346
G+LA+ E G + +GKP ++ +D ++ VGD L DI + G
Sbjct: 196 GSLAAAVETASGRQALVVGKPSPYXFECITENFSIDPARTLXVGDRLETDILFGHRCGXT 255
Query: 347 SVFIIGGIHATE 358
+V + G+ E
Sbjct: 256 TVLTLTGVSRLE 267
>pdb|2OYC|A Chain A, Crystal Structure Of Human Pyridoxal Phosphate Phosphatase
pdb|2P27|A Chain A, Crystal Structure Of Human Pyridoxal Phosphate Phosphatase
With Mg2+ At 1.9 A Resolution
pdb|2P69|A Chain A, Crystal Structure Of Human Pyridoxal Phosphate Phosphatase
With Plp
Length = 306
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTID-KLKSLGF 87
R + L D GVL +G++ PGA LE LA G + +SN+SRRA + + LGF
Sbjct: 20 RAQGVLFDCDGVLWNGERAVPGAPELLERLARAGKAALFVSNNSRRARPELALRFARLGF 79
Query: 88 D----PSLFAGAITSGELTHQYLLRRDDA 112
LF+ A+ + L Q L DA
Sbjct: 80 GGLRAEQLFSSALCAARLLRQRLPGPPDA 108
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 288 GTLASKFEKLGG-EVRWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQ 346
G+LA+ E G + +GKP ++ +D ++ VGD L DI + G
Sbjct: 196 GSLAAAVETASGRQALVVGKPSPYXFECITENFSIDPARTLXVGDRLETDILFGHRCGXT 255
Query: 347 SVFIIGGIHATE 358
+V + G+ E
Sbjct: 256 TVLTLTGVSRLE 267
>pdb|2HX1|A Chain A, Crystal Structure Of Possible Sugar Phosphatase, Had
Superfamily (Zp_00311070.1) From Cytophaga Hutchinsonii
Atcc 33406 At 2.10 A Resolution
pdb|2HX1|B Chain B, Crystal Structure Of Possible Sugar Phosphatase, Had
Superfamily (Zp_00311070.1) From Cytophaga Hutchinsonii
Atcc 33406 At 2.10 A Resolution
pdb|2HX1|C Chain C, Crystal Structure Of Possible Sugar Phosphatase, Had
Superfamily (Zp_00311070.1) From Cytophaga Hutchinsonii
Atcc 33406 At 2.10 A Resolution
pdb|2HX1|D Chain D, Crystal Structure Of Possible Sugar Phosphatase, Had
Superfamily (Zp_00311070.1) From Cytophaga Hutchinsonii
Atcc 33406 At 2.10 A Resolution
Length = 284
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 72/171 (42%), Gaps = 18/171 (10%)
Query: 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTI-DKLKSLGF 87
++K D FGVL PG +T + L G +++N + R+ + D LG
Sbjct: 13 KYKCIFFDAFGVLKTYNGLLPGIENTFDYLKAQGQDYYIVTNDASRSPEQLADSYHKLGL 72
Query: 88 DPSLFAGAITSGELTHQYL-LRRDDAWFAALGRS-CIHMTWSDRGAISLEGLGLKVVE-- 143
I+SG +T +Y+ L+ D A LG + + SD ++ L + ++
Sbjct: 73 FSITADKIISSGXITKEYIDLKVDGGIVAYLGTANSANYLVSD----GIKXLPVSAIDDS 128
Query: 144 NVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKIPMVVANPD 194
N+ E + ++ EG DL K + + + IP +VAN D
Sbjct: 129 NIGEVNALVLLDDEGFNW---------FHDLNKTVNLLRKRTIPAIVANTD 170
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 277 PFVYECVLIILGTLASKFEK-LGGEVRWMGKPDK----IIYKSAMAMVGVDACDSIAVGD 331
P V I +G +A+ E LG GKPD Y + + + VGD
Sbjct: 174 PLTKTDVAIAIGGVATXIESILGRRFIRFGKPDSQXFXFAYDXLRQKXEISKREILXVGD 233
Query: 332 SLHHDIKGANAAGIQSVFIIGG 353
+LH DI G N G+ + ++ G
Sbjct: 234 TLHTDILGGNKFGLDTALVLTG 255
>pdb|3QGM|A Chain A, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
pdb|3QGM|B Chain B, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
pdb|3QGM|C Chain C, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
pdb|3QGM|D Chain D, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
Length = 268
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 304 MGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATELGLDS 363
+GKP ++I + A+ ++G+DA D VGD + D+ A G ++V ++ G+ E
Sbjct: 185 VGKPSEVIXREALDILGLDAKDVAVVGDQIDVDVAAGKAIGAETVLVLTGVTTRE----- 239
Query: 364 YGEVADLSSVQTLVSKYDAYPSYVLPSFS 392
++ + ++ P YV S
Sbjct: 240 --------NLDQXIERHGLKPDYVFNSLK 260
Score = 34.7 bits (78), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 38/185 (20%)
Query: 31 KAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTT-IDKLKSLGFDP 89
K +++D GV+ P P + ++ L G K++ +SN+S R+ +++L+S G +
Sbjct: 9 KGYIIDIDGVIGKSVTPIPEGVEGVKKLKELGKKIIFVSNNSTRSRRILLERLRSFGLE- 67
Query: 90 SLFAGAITSGE---LTHQYLLRRDDAWFAALGRSCIHMTWSDRGAI-SLEGLGLKVVENV 145
GE L Y R + A + T + G I L GL++V +
Sbjct: 68 --------VGEDEILVATYATAR---FIAREKPNAKVFTTGEEGLIEELRLAGLEIV-DY 115
Query: 146 EEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKIPMVVANPDYVTVEARALRV 205
+EA++++ G R ++ + K L C + I + NPD R+
Sbjct: 116 DEAEYLVV----------GSNRKINFELXTKALRACL-RGIRYIATNPD---------RI 155
Query: 206 MPGKD 210
P +D
Sbjct: 156 FPAED 160
>pdb|3IB6|A Chain A, Crystal Structure Of An Uncharacterized Protein From
Listeria Monocytogenes Serotype 4b
pdb|3IB6|B Chain B, Crystal Structure Of An Uncharacterized Protein From
Listeria Monocytogenes Serotype 4b
pdb|3IB6|C Chain C, Crystal Structure Of An Uncharacterized Protein From
Listeria Monocytogenes Serotype 4b
pdb|3IB6|D Chain D, Crystal Structure Of An Uncharacterized Protein From
Listeria Monocytogenes Serotype 4b
Length = 189
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 30/47 (63%)
Query: 304 MGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFI 350
M KPDK I+ + + +D +++ VG++ DI GAN AGI ++++
Sbjct: 95 MEKPDKTIFDFTLNALQIDKTEAVMVGNTFESDIIGANRAGIHAIWL 141
>pdb|2HOQ|A Chain A, Crystal Structure Of The Probable Haloacid Dehalogenase
(Ph1655) From Pyrococcus Horikoshii Ot3
Length = 241
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 304 MGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHAT-ELGLD 362
+ KP I+K A+ V +++ VGD L+ DI GA G+++V+ G H+ EL
Sbjct: 148 VKKPHPKIFKKALKAFNVKPEEALMVGDRLYSDIYGAKRVGMKTVWFRYGKHSERELEYR 207
Query: 363 SYG--EVADLSSVQTLVSK 379
Y E+ +L S+ ++++
Sbjct: 208 KYADYEIDNLESLLEVLAR 226
>pdb|3PDW|A Chain A, Crystal Structure Of Putative P-Nitrophenyl Phosphatase
From Bacillus Subtilis
Length = 266
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 303 WMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATE 358
++GKP+ II + AM ++G D +++ VGD+ DI AG+ ++ + G+ E
Sbjct: 180 FIGKPESIIMEQAMRVLGTDVSETLMVGDNYATDIMAGINAGMDTLLVHTGVTKRE 235
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 15/128 (11%)
Query: 28 RRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAK-MVVISNSSRRASTTIDKLKSLG 86
+ +K +L+D G +++G + A + L G + V +NSSR DKL S
Sbjct: 4 KTYKGYLIDLDGTMYNGTEKIEEACEFVRTLKDRGVPYLFVTNNSSRTPKQVADKLVS-- 61
Query: 87 FD-PSLFAGAITSGELTHQYLL-RRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVEN 144
FD P+ T+ T Q++ ++ DA +G I R AI GL
Sbjct: 62 FDIPATEEQVFTTSMATAQHIAQQKKDASVYVIGEEGI------RQAIEENGLTF----G 111
Query: 145 VEEADFIL 152
E ADF++
Sbjct: 112 GENADFVV 119
>pdb|1YV9|A Chain A, Crystal Structure Of A Had-Like Phosphatase From
Enterococcus Faecalis V583
pdb|1YV9|B Chain B, Crystal Structure Of A Had-Like Phosphatase From
Enterococcus Faecalis V583
Length = 264
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 303 WMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGG 353
++GKP II + A+A +GV+ I VGD+ DI+ GI S+ + G
Sbjct: 180 YIGKPKAIIMERAIAHLGVEKEQVIMVGDNYETDIQSGIQNGIDSLLVTSG 230
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/59 (22%), Positives = 31/59 (52%)
Query: 30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88
++ +L+D G ++ GK+P P +E L + ++N++ ++ T+ + + FD
Sbjct: 5 YQGYLIDLDGTIYLGKEPIPAGKRFVERLQEKDLPFLFVTNNTTKSPETVAQRLANEFD 63
>pdb|3VAY|A Chain A, Crystal Structure Of 2-Haloacid Dehalogenase From
Pseudomonas Syringae Pv. Tomato Dc3000
pdb|3VAY|B Chain B, Crystal Structure Of 2-Haloacid Dehalogenase From
Pseudomonas Syringae Pv. Tomato Dc3000
Length = 230
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%)
Query: 304 MGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATELGLDS 363
+GKPD + A+ VDA ++ VGD DI GA AG+++++ A +
Sbjct: 153 IGKPDPAPFLEALRRAKVDASAAVHVGDHPSDDIAGAQQAGMRAIWYNPQGKAWDADRLP 212
Query: 364 YGEVADLSSVQTLVSKY 380
E+ +LS + +++++
Sbjct: 213 DAEIHNLSQLPEVLARW 229
>pdb|2C4N|A Chain A, Nagd From E.Coli K-12 Strain
Length = 250
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 288 GTLASKFEKLGG-EVRWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQ 346
G L + EK+ G + ++GKP I ++A+ + + +++ VGD+L DI AG++
Sbjct: 157 GALCAGIEKISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLE 216
Query: 347 SVFIIGGIHATE 358
++ ++ G+ + +
Sbjct: 217 TILVLSGVSSLD 228
>pdb|2X4D|A Chain A, Crystal Structure Of Human Phospholysine Phosphohistidine
Inorganic Pyrophosphate Phosphatase Lhpp
pdb|2X4D|B Chain B, Crystal Structure Of Human Phospholysine Phosphohistidine
Inorganic Pyrophosphate Phosphatase Lhpp
Length = 271
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 304 MGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGI------HAT 357
+GKP +KSA+ +GV+A ++ +GD + D+ GA G++++ + G H
Sbjct: 188 VGKPSPEFFKSALQAIGVEAHQAVMIGDDIVGDVGGAQRCGMRALQVRTGKFRPSDEHHP 247
Query: 358 ELGLDSY 364
E+ D Y
Sbjct: 248 EVKADGY 254
>pdb|1VJR|A Chain A, Crystal Structure Of 4-nitrophenylphosphatase (tm1742)
From Thermotoga Maritima At 2.40 A Resolution
Length = 271
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 11/125 (8%)
Query: 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVIS-NSSRRASTTIDKLKSLGF 87
+ + ++LD G + PG++ LE L + V + NSS A + KL++ G
Sbjct: 16 KIELFILDXDGTFYLDDSLLPGSLEFLETLKEKNKRFVFFTNNSSLGAQDYVRKLRNXGV 75
Query: 88 DPSLFAGAITSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEE 147
D A +TSGE+T ++ L+R GR I + + + E G + E E
Sbjct: 76 DVPDDA-VVTSGEITAEHXLKR-------FGRCRIFLLGTPQLKKVFEAYGHVIDE--EN 125
Query: 148 ADFIL 152
DF++
Sbjct: 126 PDFVV 130
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 305 GKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATE 358
GKP+ ++ GV VGD L+ D+K AGI S+ ++ G E
Sbjct: 194 GKPNPLVVDVISEKFGVPKERXAXVGDRLYTDVKLGKNAGIVSILVLTGETTPE 247
>pdb|1PW5|A Chain A, Putative Nagd Protein
Length = 253
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 11/125 (8%)
Query: 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVIS-NSSRRASTTIDKLKSLGF 87
+ + ++LD G + PG++ LE L + V + NSS A + KL++ G
Sbjct: 4 KIELFILDXDGTFYLDDSLLPGSLEFLETLKEKNKRFVFFTNNSSLGAQDYVRKLRNXGV 63
Query: 88 DPSLFAGAITSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEE 147
D A +TSGE+T ++ L+R GR I + + + E G + E E
Sbjct: 64 DVPDDA-VVTSGEITAEHXLKR-------FGRCRIFLLGTPQLKKVFEAYGHVIDE--EN 113
Query: 148 ADFIL 152
DF++
Sbjct: 114 PDFVV 118
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 305 GKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATE 358
GKP+ ++ GV VGD L+ D+K AGI S+ ++ G E
Sbjct: 182 GKPNPLVVDVISEKFGVPKERXAXVGDRLYTDVKLGKNAGIVSILVLTGETTPE 235
>pdb|2W4M|A Chain A, The Crystal Structure Of Human N-Acetylneuraminic Acid
Phosphatase, Nanp
Length = 270
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 297 LGGEVRWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFII 351
+GGE R KP I+ ++GV D + VGD+L DI+G AG+++ I
Sbjct: 178 VGGEQR-EEKPAPSIFYYCCNLLGVQPGDCVMVGDTLETDIQGGLNAGLKATVWI 231
>pdb|2HO4|A Chain A, Crystal Structure Of Protein From Mouse Mm.236127
pdb|2HO4|B Chain B, Crystal Structure Of Protein From Mouse Mm.236127
Length = 259
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 25 AETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTT-IDKLK 83
A R KA L+D G LH PGA L+ L T + ++N+++ +++LK
Sbjct: 2 AARRALKAVLVDLNGTLHIEDAAVPGAQEALKRLRATSVXVRFVTNTTKETKKDLLERLK 61
Query: 84 SLGFDPS---LFAGAITSGELTHQYLLR 108
L F+ S +F + L Q +R
Sbjct: 62 KLEFEISEDEIFTSLTAARNLIEQKQVR 89
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 23/50 (46%)
Query: 304 MGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGG 353
+GKP+K + A+ +++ +GD D+ GA G + + G
Sbjct: 177 VGKPEKTFFLEALRDADCAPEEAVXIGDDCRDDVDGAQNIGXLGILVKTG 226
>pdb|1YDF|A Chain A, Crystal Structure Of A Had-like Phosphatase From
Streptococcus Pneumoniae
Length = 257
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 303 WMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATE 358
++GKP+ II A+ +G++ + I VGD+ DI+ GI ++ + G E
Sbjct: 178 YIGKPNAIIMDKAVEHLGLEREELIMVGDNYLTDIRAGIDNGIPTLLVTTGFTKAE 233
>pdb|2GFH|A Chain A, Crystal Structure Of A N-acetylneuraminic Acid Phosphatase
(nanp) From Mus Musculus At 1.90 A Resolution
Length = 260
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 297 LGGEVRWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFII 351
+GGE + KP I+ ++GV D + VGD+L DI+G AG+++ I
Sbjct: 168 IGGEQK-EEKPAPSIFYHCCDLLGVQPGDCVMVGDTLETDIQGGLNAGLKATVWI 221
>pdb|3HLT|A Chain A, The Crystal Structure Of Human Haloacid Dehalogenase-Like
Hydrolase Domain Containing 2 (Hdhd2)
pdb|3HLT|C Chain C, The Crystal Structure Of Human Haloacid Dehalogenase-Like
Hydrolase Domain Containing 2 (Hdhd2)
Length = 266
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 304 MGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGG 353
+GKP+K + A+ G + +++ +GD D+ GA G+ + + G
Sbjct: 177 VGKPEKTFFLEALRGTGCEPEEAVMIGDDCRDDVGGAQDVGMLGILVKTG 226
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 24 IAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTT-IDKL 82
+A R KA L+D G LH PGA L+ L + ++N+++ + +++L
Sbjct: 1 MAACRALKAVLVDLSGTLHIEDAAVPGAQEALKRLRGASVIIRFVTNTTKESKQDLLERL 60
Query: 83 KSLGFDPS 90
+ L FD S
Sbjct: 61 RKLEFDIS 68
>pdb|3M9L|A Chain A, Crystal Structure Of Probable Had Family Hydrolase From
Pseudomonas Fluorescens Pf-5
pdb|2YBD|A Chain A, Crystal Structure Of Probable Had Family Hydrolase From
Pseudomonas Fluorescens Pf-5 With Bound Phosphate
pdb|3R09|A Chain A, Crystal Structure Of Probable Had Family Hydrolase From
Pseudomonas Fluorescens Pf-5 With Bound Mg
Length = 205
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 26 ETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSR 73
E+ AWLL+ L G +P PGA+ + LA G ++ +++ ++R
Sbjct: 50 ESAAKHAWLLEHERDLAQGSRPAPGAVELVRELAGRGYRLGILTRNAR 97
>pdb|2C07|A Chain A, Oxoacyl-Acp Reductase Of Plasmodium Falciparum
Length = 285
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 29/45 (64%)
Query: 56 EMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100
+MLA + + ++ IS + + + +D++KS G++ S +AG ++ E
Sbjct: 62 KMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKE 106
>pdb|1ZJJ|A Chain A, Crystal Structure Of Hypothetical Protein Ph1952 From
Pyrococcus Horikoshii Ot3
pdb|1ZJJ|B Chain B, Crystal Structure Of Hypothetical Protein Ph1952 From
Pyrococcus Horikoshii Ot3
Length = 263
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 32 AWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTI-DKLKSLGFDPS 90
A + D GVL+ G + PG +E L G ++N+S + +KL +G D S
Sbjct: 3 AIIFDMDGVLYRGNRAIPGVRELIEFLKERGIPFAFLTNNSTKTPEMYREKLLKMGIDVS 62
Query: 91 LFAGAITSGELTHQYLLRRDD 111
+ ITSG T Y+ + D
Sbjct: 63 -SSIIITSGLATRLYMSKHLD 82
>pdb|2NYV|A Chain A, X-Ray Crystal Structure Of A Phosphoglycolate Phosphatase
From Aquifex Aeolicus
Length = 222
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 26/55 (47%)
Query: 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100
KPYP TLE L + G K+ V+SN S I + +L L G T GE
Sbjct: 83 KPYPEIPYTLEALKSKGFKLAVVSNKLEELSKKILDILNLSGYFDLIVGGDTFGE 137
>pdb|3EPR|A Chain A, Crystal Structure Of Putative Had Superfamily Hydrolase
From Streptococcus Agalactiae
Length = 264
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 18/92 (19%)
Query: 303 WMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATELGLD 362
++GKP+ II A+ ++ + ++ VGD+ DI I ++ + G E
Sbjct: 179 FIGKPNAIIMNKALEILNIPRNQAVMVGDNYLTDIMAGINNDIDTLLVTTGFTTVE---- 234
Query: 363 SYGEVADLSSVQTLVSKYDAYPSYVLPSF-SW 393
EV DL +Q PSYVL S W
Sbjct: 235 ---EVPDL-PIQ---------PSYVLASLDEW 253
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/53 (22%), Positives = 28/53 (52%)
Query: 30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKL 82
+K +L+D G ++ GK P +E L G ++++N++ R ++ ++
Sbjct: 5 YKGYLIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEM 57
>pdb|1YS9|A Chain A, Crystal Sructure Of Phosphatase Spy1043 From Streptococcus
Pyogenes
Length = 254
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 29/56 (51%)
Query: 303 WMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATE 358
++GKP+ II ++ ++G+ +++ VGD+ DI I ++ + G E
Sbjct: 178 FIGKPNAIIMNKSLEVLGIQRSEAVMVGDNYLTDIMAGIQNDIATILVTTGFTRPE 233
>pdb|2YY6|A Chain A, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
pdb|2YY6|B Chain B, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
Length = 213
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 26/55 (47%)
Query: 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100
KPYP TLE L + G K+ V+SN S I + +L L G T GE
Sbjct: 81 KPYPEIPYTLEALKSKGFKLAVVSNKLEELSKKILDILNLSGYFDLIVGGDTFGE 135
>pdb|3K1Z|A Chain A, Crystal Structure Of Human Haloacid Dehalogenase-like
Hydrolase Domain Containing 3 (hdhd3)
Length = 263
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 306 KPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIG 352
KPD I++ A+ + + + VGD+ D +G A G S ++G
Sbjct: 161 KPDPRIFQEALRLAHXEPVVAAHVGDNYLCDYQGPRAVGXHSFLVVG 207
>pdb|1WVI|A Chain A, Crystal Structure Of Putative Phosphatase From
Streptococcus Mutans Ua159
pdb|1WVI|B Chain B, Crystal Structure Of Putative Phosphatase From
Streptococcus Mutans Ua159
pdb|1WVI|C Chain C, Crystal Structure Of Putative Phosphatase From
Streptococcus Mutans Ua159
pdb|1WVI|D Chain D, Crystal Structure Of Putative Phosphatase From
Streptococcus Mutans Ua159
Length = 257
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 304 MGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATE 358
+GKP+ +I A+ +GV ++I VGD+ DI I ++ + G E
Sbjct: 179 IGKPEAVIMNKALDRLGVKRHEAIMVGDNYLTDITAGIKNDIATLLVTTGFTKPE 233
>pdb|3KC2|A Chain A, Crystal Structure Of Mitochondrial Had-Like Phosphatase
From Saccharomyces Cerevisiae
pdb|3KC2|B Chain B, Crystal Structure Of Mitochondrial Had-Like Phosphatase
From Saccharomyces Cerevisiae
Length = 352
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 20 GLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNS---SRRAS 76
G R T + A+ D GVL GKKP GA L++L ++++N S RA
Sbjct: 3 GKRFFQTTSKKIAFAFDIDGVLFRGKKPIAGASDALKLLNRNKIPYILLTNGGGFSERAR 62
Query: 77 T 77
T
Sbjct: 63 T 63
>pdb|3QNM|A Chain A, Haloalkane Dehalogenase Family Member From Bacteroides
Thetaiotaomicron Of Unknown Function
Length = 240
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 306 KPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVF 349
KP I+ A++ + +S+ +GDS DI GA+ G F
Sbjct: 162 KPRPEIFHFALSATQSELRESLXIGDSWEADITGAHGVGXHQAF 205
>pdb|2FDR|A Chain A, Crystal Structure Of Conserved Haloacid Dehalogenase-like
Protein Of Unknown Function Atu0790 From Agrobacterium
Tumefaciens Str. C58
Length = 229
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Query: 306 KPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATELGLDSYG 365
KP I+ A GV + V DS+H I GA AAG + + G H S+
Sbjct: 143 KPKPDIFLHGAAQFGVSPDRVVVVEDSVH-GIHGARAAGXRVIGFTGASHT----YPSHA 197
Query: 366 EVADLSSVQTLVSKYDAYPSYVLPSFSW 393
+ + +T++S+ P+ + W
Sbjct: 198 DRLTDAGAETVISRXQDLPAVIAAXAEW 225
>pdb|1YUD|A Chain A, X-ray Crystal Structure Of Protein So0799 From Shewanella
Oneidensis. Northeast Structural Genomics Consortium
Target Sor12.
pdb|1YUD|B Chain B, X-ray Crystal Structure Of Protein So0799 From Shewanella
Oneidensis. Northeast Structural Genomics Consortium
Target Sor12.
pdb|1YUD|C Chain C, X-ray Crystal Structure Of Protein So0799 From Shewanella
Oneidensis. Northeast Structural Genomics Consortium
Target Sor12.
pdb|1YUD|D Chain D, X-ray Crystal Structure Of Protein So0799 From Shewanella
Oneidensis. Northeast Structural Genomics Consortium
Target Sor12.
pdb|1YUD|E Chain E, X-ray Crystal Structure Of Protein So0799 From Shewanella
Oneidensis. Northeast Structural Genomics Consortium
Target Sor12.
pdb|1YUD|F Chain F, X-ray Crystal Structure Of Protein So0799 From Shewanella
Oneidensis. Northeast Structural Genomics Consortium
Target Sor12.
pdb|1YUD|G Chain G, X-ray Crystal Structure Of Protein So0799 From Shewanella
Oneidensis. Northeast Structural Genomics Consortium
Target Sor12.
pdb|1YUD|H Chain H, X-ray Crystal Structure Of Protein So0799 From Shewanella
Oneidensis. Northeast Structural Genomics Consortium
Target Sor12.
pdb|1YUD|I Chain I, X-ray Crystal Structure Of Protein So0799 From Shewanella
Oneidensis. Northeast Structural Genomics Consortium
Target Sor12.
pdb|1YUD|J Chain J, X-ray Crystal Structure Of Protein So0799 From Shewanella
Oneidensis. Northeast Structural Genomics Consortium
Target Sor12
Length = 170
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 70 NSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRDDAWFAALGRSCIHMTWSDR 129
SS R+ T D + L S + +GE++H + L D+ W+ G+S S
Sbjct: 33 RSSYRSETAFDPSRQLW---SSIYFLLRTGEVSHFHRLTADEXWYFHAGQSLTIYXISPE 89
Query: 130 GAISLEGLGLKVVENVEEADFILAHG 155
G ++ LGL + E F++ G
Sbjct: 90 GELTTAQLGLDLAAG-ERPQFLVPKG 114
>pdb|3SMV|A Chain A, X-Ray Crystal Structure Of L-Azetidine-2-Carboxylate
Hydrolase
Length = 240
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 307 PDKIIYK-SAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFI 350
P+ Y A+A G++ D + +SL+HD AN AG+ S +I
Sbjct: 155 PNNFTYMIDALAKAGIEKKDILHTAESLYHDHIPANDAGLVSAWI 199
>pdb|2YL8|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 434
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 12/116 (10%)
Query: 100 ELTHQYLLRRDDAWFAALGRSCIHMTWS--DRGAISLEGLGLKVVENVEEADFILAHG-- 155
E HQ +L +DAW+ LGR+ W D+G ++ + V E AD + G
Sbjct: 276 EKGHQ-ILNTNDAWYYVLGRNADGQGWYNLDQGLNGIKNTPITSVPKTEGADIPIIGGMV 334
Query: 156 TEGMGLPSGDVRPMSLQDLEKILEICASKKIPMVVANPDYVTVEARALRVMPGKDI 211
PS P L K++ A+ A DY + E +AL +P KD+
Sbjct: 335 AAWADTPSARYSPSRLF---KLMRHFANANAEYFAA--DYESAE-QALNEVP-KDL 383
>pdb|2YL6|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 434
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 12/116 (10%)
Query: 100 ELTHQYLLRRDDAWFAALGRSCIHMTWS--DRGAISLEGLGLKVVENVEEADFILAHG-- 155
E HQ +L +DAW+ LGR+ W D+G ++ + V E AD + G
Sbjct: 276 EKGHQ-ILNTNDAWYYVLGRNADGQGWYNLDQGLNGIKNTPITSVPKTEGADIPIIGGMV 334
Query: 156 TEGMGLPSGDVRPMSLQDLEKILEICASKKIPMVVANPDYVTVEARALRVMPGKDI 211
PS P L K++ A+ A DY + E +AL +P KD+
Sbjct: 335 AAWADTPSARYSPSRLF---KLMRHFANANAEYFAA--DYESAE-QALNEVP-KDL 383
>pdb|2YLL|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 454
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 100 ELTHQYLLRRDDAWFAALGRSCIHMTWS--DRGAISLEGLGLKVVENVEEADFILAHG 155
E HQ +L +DAW+ LGR+ W D+G ++ + V E AD + G
Sbjct: 296 EKGHQ-ILNTNDAWYYVLGRNADGQGWYNLDQGLNGIKNTPITSVPKTEGADIPIIGG 352
>pdb|1C8B|A Chain A, Crystal Structure Of A Novel Germination Protease From
Spores Of Bacillus Megaterium: Structural Rearrangements
And Zymogen Activation
pdb|1C8B|B Chain B, Crystal Structure Of A Novel Germination Protease From
Spores Of Bacillus Megaterium: Structural Rearrangements
And Zymogen Activation
Length = 371
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 274 IGLPFVYECVLIILGTLASKFEKLGGEVRWMGKPDKIIYKSAMA 317
IG+P V + V I T+ + G E++ GKP K + S M
Sbjct: 240 IGIPTVVDAVSITSDTIDFILKHFGREMKEQGKPSKSLLPSGMT 283
>pdb|3RF6|A Chain A, Crystal Structure Of Glycerol-3 Phosphate Bound Had-Like
Phosphatase From Saccharomyces Cerevisiae
pdb|3RF6|B Chain B, Crystal Structure Of Glycerol-3 Phosphate Bound Had-Like
Phosphatase From Saccharomyces Cerevisiae
Length = 355
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 20 GLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNS---SRRAS 76
G R T + A+ GVL GKKP GA L++L ++++N S RA
Sbjct: 6 GKRFFQTTSKKIAFAFAIDGVLFRGKKPIAGASDALKLLNRNKIPYILLTNGGGFSERAR 65
Query: 77 T 77
T
Sbjct: 66 T 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,448,174
Number of Sequences: 62578
Number of extensions: 460441
Number of successful extensions: 1300
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1247
Number of HSP's gapped (non-prelim): 58
length of query: 393
length of database: 14,973,337
effective HSP length: 101
effective length of query: 292
effective length of database: 8,652,959
effective search space: 2526664028
effective search space used: 2526664028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)