Query 016204
Match_columns 393
No_of_seqs 325 out of 2373
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 04:45:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016204.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016204hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0647 NagD Predicted sugar p 100.0 1.7E-43 3.8E-48 327.4 21.1 232 28-359 6-243 (269)
2 KOG2882 p-Nitrophenyl phosphat 100.0 3E-41 6.6E-46 308.7 19.8 283 8-392 3-297 (306)
3 PRK10444 UMP phosphatase; Prov 100.0 2.8E-38 6E-43 293.7 21.4 239 30-391 1-242 (248)
4 TIGR01457 HAD-SF-IIA-hyp2 HAD- 100.0 3.1E-37 6.8E-42 287.7 22.7 244 30-392 1-247 (249)
5 TIGR01452 PGP_euk phosphoglyco 100.0 4.2E-36 9.1E-41 284.9 22.4 255 29-392 1-277 (279)
6 PLN02645 phosphoglycolate phos 100.0 5.5E-36 1.2E-40 288.0 22.2 266 16-378 16-308 (311)
7 TIGR01458 HAD-SF-IIA-hyp3 HAD- 100.0 1.5E-32 3.3E-37 257.2 22.6 243 30-377 1-254 (257)
8 TIGR01459 HAD-SF-IIA-hyp4 HAD- 100.0 4.8E-31 1E-35 245.3 24.2 240 21-352 1-242 (242)
9 TIGR01460 HAD-SF-IIA Haloacid 100.0 5.4E-31 1.2E-35 243.8 19.4 224 33-353 1-236 (236)
10 TIGR01456 CECR5 HAD-superfamil 100.0 2.9E-31 6.3E-36 256.2 18.3 249 32-375 2-318 (321)
11 KOG3040 Predicted sugar phosph 100.0 2.8E-29 6E-34 217.0 21.1 246 27-377 4-256 (262)
12 PF13344 Hydrolase_6: Haloacid 99.8 2E-21 4.4E-26 155.6 7.7 99 33-140 1-101 (101)
13 PRK13226 phosphoglycolate phos 99.8 8.1E-20 1.8E-24 168.4 14.2 147 231-378 10-225 (229)
14 PRK13288 pyrophosphatase PpaX; 99.8 3E-19 6.4E-24 162.8 13.6 146 233-379 3-212 (214)
15 COG0546 Gph Predicted phosphat 99.8 1.6E-18 3.4E-23 158.9 15.3 147 232-379 3-219 (220)
16 PRK06769 hypothetical protein; 99.8 2E-18 4.3E-23 152.2 13.9 75 302-377 89-171 (173)
17 PLN03243 haloacid dehalogenase 99.8 1.9E-18 4E-23 162.0 14.4 144 233-378 24-235 (260)
18 COG0637 Predicted phosphatase/ 99.8 2.7E-18 5.8E-23 157.3 13.7 146 232-379 1-218 (221)
19 PLN02770 haloacid dehalogenase 99.8 2.9E-18 6.2E-23 160.0 13.7 76 298-374 156-232 (248)
20 TIGR01454 AHBA_synth_RP 3-amin 99.8 3.3E-18 7.1E-23 154.9 13.4 80 298-378 123-204 (205)
21 TIGR01449 PGP_bact 2-phosphogl 99.8 4.1E-18 8.9E-23 154.9 13.1 78 298-376 133-212 (213)
22 PRK13223 phosphoglycolate phos 99.8 5.8E-18 1.3E-22 160.0 14.2 148 231-379 11-231 (272)
23 TIGR03351 PhnX-like phosphonat 99.8 5.3E-18 1.1E-22 155.1 13.5 79 298-377 137-219 (220)
24 TIGR00213 GmhB_yaeD D,D-heptos 99.8 1.2E-17 2.7E-22 147.6 15.4 73 301-374 101-175 (176)
25 TIGR01422 phosphonatase phosph 99.8 7E-18 1.5E-22 157.8 12.7 79 298-377 148-252 (253)
26 PRK11587 putative phosphatase; 99.7 9.1E-18 2E-22 153.6 12.4 74 299-374 131-204 (218)
27 PRK08942 D,D-heptose 1,7-bisph 99.7 6.4E-17 1.4E-21 143.7 17.0 78 302-380 99-179 (181)
28 PLN02575 haloacid dehalogenase 99.7 1.9E-17 4E-22 161.2 14.5 144 230-375 125-339 (381)
29 KOG1618 Predicted phosphatase 99.7 1.4E-17 3.1E-22 153.0 12.4 235 30-356 35-345 (389)
30 PRK10826 2-deoxyglucose-6-phos 99.7 2.5E-17 5.4E-22 151.1 13.2 143 232-375 6-217 (222)
31 PRK13478 phosphonoacetaldehyde 99.7 4.3E-17 9.4E-22 153.7 13.6 81 298-379 150-256 (267)
32 PRK10563 6-phosphogluconate ph 99.7 4E-17 8.7E-22 149.5 12.5 148 233-381 4-216 (221)
33 PRK13225 phosphoglycolate phos 99.7 6.7E-17 1.4E-21 152.5 13.9 148 231-379 60-269 (273)
34 PRK10530 pyridoxal phosphate ( 99.7 1.4E-16 3.1E-21 150.3 15.6 59 28-88 1-60 (272)
35 PRK13222 phosphoglycolate phos 99.7 1.5E-16 3.3E-21 145.8 14.8 81 298-379 141-223 (226)
36 PRK10513 sugar phosphate phosp 99.7 8.8E-17 1.9E-21 151.7 13.2 251 28-368 1-253 (270)
37 PLN02940 riboflavin kinase 99.7 1.4E-16 3.1E-21 157.3 13.2 77 298-375 142-218 (382)
38 TIGR02253 CTE7 HAD superfamily 99.7 2.4E-16 5.2E-21 144.2 12.2 76 298-373 142-220 (221)
39 TIGR01656 Histidinol-ppas hist 99.7 6E-16 1.3E-20 132.8 13.9 50 303-353 98-147 (147)
40 TIGR02254 YjjG/YfnB HAD superf 99.7 1.2E-15 2.5E-20 139.7 14.2 79 298-376 144-223 (224)
41 PRK06698 bifunctional 5'-methy 99.7 9.2E-16 2E-20 155.5 13.9 73 305-380 384-456 (459)
42 PLN02779 haloacid dehalogenase 99.7 9.6E-16 2.1E-20 145.8 13.0 76 299-375 195-270 (286)
43 PRK10725 fructose-1-P/6-phosph 99.7 7.3E-16 1.6E-20 137.4 11.2 53 298-351 134-186 (188)
44 TIGR01662 HAD-SF-IIIA HAD-supe 99.6 1.9E-15 4.2E-20 127.0 12.7 47 304-351 83-131 (132)
45 PRK15126 thiamin pyrimidine py 99.6 9.5E-15 2.1E-19 138.1 16.0 109 30-197 2-111 (272)
46 PRK09449 dUMP phosphatase; Pro 99.6 4.6E-15 9.9E-20 136.1 12.9 81 298-378 142-223 (224)
47 PRK10748 flavin mononucleotide 99.6 4.8E-15 1E-19 137.5 12.6 79 298-376 155-237 (238)
48 PF13242 Hydrolase_like: HAD-h 99.6 3.9E-15 8.4E-20 112.7 9.0 72 304-392 2-73 (75)
49 TIGR01664 DNA-3'-Pase DNA 3'-p 99.6 9E-15 1.9E-19 127.9 12.2 46 304-349 106-160 (166)
50 TIGR01261 hisB_Nterm histidino 99.6 1.4E-14 3E-19 126.0 13.1 54 301-355 98-151 (161)
51 COG1011 Predicted hydrolase (H 99.6 2.2E-14 4.8E-19 131.6 15.3 82 298-379 146-228 (229)
52 PRK14988 GMP/IMP nucleotidase; 99.6 7.5E-15 1.6E-19 134.9 11.9 61 298-359 141-202 (224)
53 TIGR01668 YqeG_hyp_ppase HAD s 99.6 2E-14 4.3E-19 126.4 13.5 56 305-360 90-145 (170)
54 TIGR01990 bPGM beta-phosphoglu 99.6 9.9E-15 2.1E-19 129.6 10.9 53 298-351 133-185 (185)
55 COG0561 Cof Predicted hydrolas 99.6 5.5E-14 1.2E-18 132.3 16.0 225 28-348 1-229 (264)
56 PLN02887 hydrolase family prot 99.6 3.2E-14 6.9E-19 146.2 15.1 268 15-368 295-564 (580)
57 PRK10976 putative hydrolase; P 99.6 2.7E-14 6E-19 134.4 13.5 57 30-88 2-59 (266)
58 TIGR02009 PGMB-YQAB-SF beta-ph 99.6 1.9E-14 4.1E-19 127.8 10.9 51 299-350 135-185 (185)
59 PLN02919 haloacid dehalogenase 99.5 4.4E-14 9.6E-19 155.3 14.6 86 298-384 210-298 (1057)
60 PLN02811 hydrolase 99.5 6.4E-14 1.4E-18 128.3 11.6 74 301-375 132-208 (220)
61 TIGR00099 Cof-subfamily Cof su 99.5 1.4E-13 3.1E-18 128.9 14.1 108 32-198 1-109 (256)
62 PRK03669 mannosyl-3-phosphogly 99.5 6.6E-13 1.4E-17 125.5 18.0 60 27-88 4-64 (271)
63 PRK01158 phosphoglycolate phos 99.5 3.1E-13 6.7E-18 124.4 15.4 59 28-88 1-60 (230)
64 TIGR01993 Pyr-5-nucltdase pyri 99.5 9.9E-14 2.1E-18 123.4 10.6 45 305-350 140-184 (184)
65 COG2179 Predicted hydrolase of 99.5 1.3E-13 2.8E-18 116.6 10.4 50 305-354 92-141 (175)
66 PF08282 Hydrolase_3: haloacid 99.5 7.8E-13 1.7E-17 122.3 16.1 110 33-201 1-111 (254)
67 TIGR02252 DREG-2 REG-2-like, H 99.5 1.4E-13 3E-18 124.3 9.7 52 298-349 152-203 (203)
68 TIGR01428 HAD_type_II 2-haloal 99.5 1.7E-13 3.7E-18 123.2 10.0 55 298-353 140-194 (198)
69 PHA02597 30.2 hypothetical pro 99.5 1.9E-13 4E-18 123.0 10.2 65 305-374 129-195 (197)
70 PRK00192 mannosyl-3-phosphogly 99.5 1.3E-12 2.7E-17 123.7 14.7 59 28-88 2-61 (273)
71 TIGR01685 MDP-1 magnesium-depe 99.5 3.5E-13 7.5E-18 118.2 9.9 51 305-356 110-162 (174)
72 TIGR01509 HAD-SF-IA-v3 haloaci 99.4 1E-12 2.2E-17 116.2 12.0 50 300-350 134-183 (183)
73 TIGR01548 HAD-SF-IA-hyp1 haloa 99.4 7.5E-13 1.6E-17 119.1 10.7 42 300-343 156-197 (197)
74 cd01427 HAD_like Haloacid deha 99.4 1.8E-12 3.9E-17 107.9 11.6 49 301-350 91-139 (139)
75 PRK09456 ?-D-glucose-1-phospha 99.4 1.3E-12 2.7E-17 117.8 11.2 57 299-356 134-190 (199)
76 PF13419 HAD_2: Haloacid dehal 99.4 1.2E-12 2.6E-17 114.0 10.1 52 298-350 125-176 (176)
77 PRK05446 imidazole glycerol-ph 99.4 4.5E-12 9.7E-17 123.0 14.7 50 302-352 100-149 (354)
78 TIGR02247 HAD-1A3-hyp Epoxide 99.4 1.4E-12 3E-17 118.5 10.3 54 300-354 146-199 (211)
79 PLN02954 phosphoserine phospha 99.4 1.1E-11 2.4E-16 113.6 16.2 71 304-377 152-223 (224)
80 KOG2914 Predicted haloacid-hal 99.4 4E-12 8.7E-17 115.1 12.7 118 233-352 10-197 (222)
81 PHA02530 pseT polynucleotide k 99.4 4.3E-12 9.4E-17 121.6 13.8 49 305-354 250-299 (300)
82 TIGR02461 osmo_MPG_phos mannos 99.4 4.6E-12 9.9E-17 116.4 12.8 55 32-88 1-55 (225)
83 TIGR01482 SPP-subfamily Sucros 99.4 6.2E-12 1.3E-16 115.2 13.5 53 33-87 1-54 (225)
84 COG0241 HisB Histidinol phosph 99.4 2.7E-11 5.9E-16 105.9 16.5 73 302-375 101-174 (181)
85 TIGR01487 SPP-like sucrose-pho 99.4 9.5E-12 2.1E-16 113.5 13.8 57 30-88 1-58 (215)
86 TIGR00338 serB phosphoserine p 99.4 1.2E-11 2.6E-16 112.9 14.5 67 305-376 150-218 (219)
87 TIGR02463 MPGP_rel mannosyl-3- 99.4 3.1E-11 6.8E-16 110.5 16.8 55 32-88 1-56 (221)
88 TIGR01549 HAD-SF-IA-v1 haloaci 99.4 6.8E-12 1.5E-16 108.1 11.2 44 298-344 111-154 (154)
89 TIGR01486 HAD-SF-IIB-MPGP mann 99.3 5.7E-12 1.2E-16 118.1 10.8 55 32-88 1-56 (256)
90 TIGR01670 YrbI-phosphatas 3-de 99.3 7.7E-12 1.7E-16 108.1 10.1 61 306-370 75-135 (154)
91 PTZ00174 phosphomannomutase; P 99.3 4.1E-11 8.8E-16 111.8 14.9 54 28-83 3-57 (247)
92 TIGR01493 HAD-SF-IA-v2 Haloaci 99.3 5.5E-12 1.2E-16 111.0 8.3 45 298-343 131-175 (175)
93 PRK09484 3-deoxy-D-manno-octul 99.3 1.1E-11 2.5E-16 110.2 9.5 66 308-377 97-168 (183)
94 TIGR01485 SPP_plant-cyano sucr 99.2 4.7E-10 1E-14 104.7 17.8 53 300-353 160-212 (249)
95 TIGR02726 phenyl_P_delta pheny 99.2 5.4E-11 1.2E-15 104.1 9.2 44 306-350 81-124 (169)
96 PRK11133 serB phosphoserine ph 99.2 2.7E-10 5.9E-15 109.8 14.6 71 303-378 244-316 (322)
97 PRK14502 bifunctional mannosyl 99.2 7.5E-10 1.6E-14 114.1 17.8 61 26-88 412-473 (694)
98 PRK12702 mannosyl-3-phosphogly 99.2 1.9E-09 4E-14 100.9 18.9 57 30-88 1-58 (302)
99 KOG3085 Predicted hydrolase (H 99.2 5.1E-11 1.1E-15 108.4 8.3 61 298-358 160-220 (237)
100 TIGR01681 HAD-SF-IIIC HAD-supe 99.1 2.1E-10 4.5E-15 96.0 9.0 42 31-72 1-55 (128)
101 TIGR01672 AphA HAD superfamily 99.1 2.5E-10 5.4E-15 105.1 10.2 53 298-358 166-218 (237)
102 TIGR02471 sucr_syn_bact_C sucr 99.1 1.3E-09 2.9E-14 100.8 14.5 65 32-101 1-65 (236)
103 PRK11009 aphA acid phosphatase 99.1 2.6E-09 5.6E-14 98.3 14.4 39 315-358 180-218 (237)
104 PRK10187 trehalose-6-phosphate 99.1 1E-08 2.3E-13 96.6 18.2 72 303-381 170-244 (266)
105 PF09419 PGP_phosphatase: Mito 99.0 1.6E-09 3.5E-14 94.0 10.8 44 29-72 40-87 (168)
106 TIGR01691 enolase-ppase 2,3-di 99.0 2E-09 4.3E-14 98.3 11.4 50 305-355 151-200 (220)
107 TIGR01484 HAD-SF-IIB HAD-super 99.0 1.4E-08 3.1E-13 91.6 16.8 48 300-348 156-203 (204)
108 PRK09552 mtnX 2-hydroxy-3-keto 99.0 2.5E-09 5.4E-14 97.8 11.7 64 314-380 151-215 (219)
109 TIGR01663 PNK-3'Pase polynucle 99.0 3.1E-09 6.6E-14 108.2 12.3 45 29-73 167-224 (526)
110 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.0 2E-09 4.3E-14 96.6 9.6 47 307-354 147-193 (201)
111 PLN02423 phosphomannomutase 99.0 1.3E-08 2.8E-13 94.7 14.5 52 29-83 5-58 (245)
112 TIGR01686 FkbH FkbH-like domai 98.9 4.6E-09 9.9E-14 101.7 10.7 41 305-346 85-125 (320)
113 TIGR00685 T6PP trehalose-phosp 98.9 8.6E-08 1.9E-12 89.2 17.5 66 309-379 169-241 (244)
114 PTZ00445 p36-lilke protein; Pr 98.8 3.5E-08 7.6E-13 87.7 11.7 52 301-353 152-207 (219)
115 smart00577 CPDc catalytic doma 98.8 1.2E-08 2.6E-13 87.5 8.2 42 303-348 98-139 (148)
116 PF08645 PNK3P: Polynucleotide 98.8 2.8E-08 6.2E-13 86.2 8.8 46 303-348 94-153 (159)
117 PLN02382 probable sucrose-phos 98.8 2.6E-07 5.7E-12 92.3 16.7 49 305-354 173-224 (413)
118 PRK13582 thrH phosphoserine ph 98.8 1.1E-08 2.4E-13 92.3 5.9 70 307-380 128-198 (205)
119 TIGR01489 DKMTPPase-SF 2,3-dik 98.6 6.6E-07 1.4E-11 79.2 12.8 40 303-346 145-184 (188)
120 PF05116 S6PP: Sucrose-6F-phos 98.6 6.9E-07 1.5E-11 83.3 12.9 46 303-352 163-208 (247)
121 TIGR01684 viral_ppase viral ph 98.6 1.4E-07 2.9E-12 88.4 8.0 70 29-101 125-198 (301)
122 COG0560 SerB Phosphoserine pho 98.5 9E-07 2E-11 80.5 11.7 42 307-349 144-185 (212)
123 KOG3109 Haloacid dehalogenase- 98.5 6.9E-07 1.5E-11 79.2 10.5 55 301-356 155-210 (244)
124 TIGR01490 HAD-SF-IB-hyp1 HAD-s 98.5 7.6E-07 1.7E-11 80.0 10.3 46 303-349 151-196 (202)
125 PRK14501 putative bifunctional 98.5 4.8E-06 1E-10 89.4 17.9 66 308-380 658-723 (726)
126 TIGR01488 HAD-SF-IB Haloacid D 98.4 2.2E-06 4.7E-11 75.2 11.4 39 304-343 139-177 (177)
127 TIGR01689 EcbF-BcbF capsule bi 98.4 1.1E-06 2.5E-11 72.7 7.8 41 31-71 2-49 (126)
128 TIGR02137 HSK-PSP phosphoserin 98.4 6.4E-06 1.4E-10 74.4 13.2 69 306-380 130-198 (203)
129 TIGR03333 salvage_mtnX 2-hydro 98.4 6.5E-07 1.4E-11 81.6 6.5 76 302-380 125-211 (214)
130 PHA03398 viral phosphatase sup 98.4 9.8E-07 2.1E-11 82.8 7.3 74 29-105 127-204 (303)
131 PRK11587 putative phosphatase; 98.3 1.5E-06 3.2E-11 79.4 7.8 49 46-98 83-131 (218)
132 smart00775 LNS2 LNS2 domain. T 98.3 1.4E-06 3E-11 75.4 6.7 69 32-101 1-85 (157)
133 PF00702 Hydrolase: haloacid d 98.3 1.8E-06 3.9E-11 77.9 7.2 39 305-344 177-215 (215)
134 PLN02205 alpha,alpha-trehalose 98.3 3.2E-05 7E-10 83.7 17.7 75 309-388 764-852 (854)
135 TIGR01533 lipo_e_P4 5'-nucleot 98.3 3E-06 6.4E-11 79.4 8.5 70 29-98 74-171 (266)
136 PLN02580 trehalose-phosphatase 98.3 9E-05 2E-09 72.8 18.7 66 309-379 303-375 (384)
137 PRK13288 pyrophosphatase PpaX; 98.2 2.8E-06 6E-11 77.2 7.6 51 46-99 82-132 (214)
138 PF12689 Acid_PPase: Acid Phos 98.2 1.1E-05 2.5E-10 70.2 10.7 51 307-358 108-158 (169)
139 PLN02770 haloacid dehalogenase 98.2 3.6E-06 7.8E-11 78.5 7.6 52 47-101 109-160 (248)
140 COG1778 Low specificity phosph 98.2 4E-07 8.6E-12 76.6 0.7 108 231-348 6-123 (170)
141 TIGR02244 HAD-IG-Ncltidse HAD 98.1 2.3E-05 5E-10 75.9 11.3 42 311-352 282-324 (343)
142 COG0637 Predicted phosphatase/ 98.1 5E-06 1.1E-10 76.2 6.2 53 46-101 86-138 (221)
143 PLN03017 trehalose-phosphatase 98.1 0.00034 7.3E-09 68.2 18.0 68 309-379 285-357 (366)
144 PLN02575 haloacid dehalogenase 98.0 1.1E-05 2.3E-10 79.3 7.2 86 11-101 114-268 (381)
145 PRK13478 phosphonoacetaldehyde 98.0 1.3E-05 2.7E-10 75.6 7.4 50 47-99 102-152 (267)
146 PRK13226 phosphoglycolate phos 98.0 1.5E-05 3.2E-10 73.4 7.5 50 46-98 95-144 (229)
147 KOG1615 Phosphoserine phosphat 98.0 2.4E-05 5.2E-10 68.3 8.2 33 305-342 159-191 (227)
148 COG0546 Gph Predicted phosphat 98.0 1.8E-05 4E-10 72.4 8.0 49 46-97 89-137 (220)
149 PRK10826 2-deoxyglucose-6-phos 98.0 2.1E-05 4.6E-10 71.9 8.0 51 46-99 92-142 (222)
150 TIGR01672 AphA HAD superfamily 98.0 2.4E-05 5.1E-10 72.3 8.2 66 32-98 65-167 (237)
151 TIGR02009 PGMB-YQAB-SF beta-ph 98.0 1.6E-05 3.4E-10 70.2 6.8 49 46-99 88-136 (185)
152 TIGR02253 CTE7 HAD superfamily 98.0 1.8E-05 3.9E-10 72.1 7.2 52 46-100 94-145 (221)
153 PRK13222 phosphoglycolate phos 98.0 2.7E-05 5.8E-10 71.1 8.2 51 46-99 93-143 (226)
154 TIGR03351 PhnX-like phosphonat 97.9 2.7E-05 5.8E-10 71.0 7.5 52 46-100 87-140 (220)
155 PLN03243 haloacid dehalogenase 97.9 2.9E-05 6.4E-10 72.9 7.6 51 47-100 110-160 (260)
156 TIGR01428 HAD_type_II 2-haloal 97.9 3.5E-05 7.5E-10 69.1 7.5 52 46-100 92-143 (198)
157 PRK08238 hypothetical protein; 97.9 0.0002 4.3E-09 72.9 13.4 35 317-355 135-169 (479)
158 PRK13223 phosphoglycolate phos 97.9 4.8E-05 1E-09 72.0 7.9 50 47-99 102-151 (272)
159 PRK14988 GMP/IMP nucleotidase; 97.8 4.1E-05 8.9E-10 70.3 7.0 51 47-100 94-144 (224)
160 PRK13225 phosphoglycolate phos 97.8 5.2E-05 1.1E-09 71.7 7.5 50 46-98 142-191 (273)
161 PRK09449 dUMP phosphatase; Pro 97.8 4.6E-05 1E-09 69.6 6.5 50 47-100 96-145 (224)
162 PLN02151 trehalose-phosphatase 97.8 0.0021 4.5E-08 62.6 17.4 66 309-379 271-343 (354)
163 TIGR01990 bPGM beta-phosphoglu 97.7 6.8E-05 1.5E-09 66.1 6.7 49 46-99 87-135 (185)
164 TIGR02247 HAD-1A3-hyp Epoxide 97.7 5.8E-05 1.3E-09 68.3 6.4 53 46-99 94-146 (211)
165 PF13419 HAD_2: Haloacid dehal 97.7 4.3E-05 9.3E-10 66.1 5.3 53 44-99 75-127 (176)
166 COG1778 Low specificity phosph 97.7 4.4E-05 9.4E-10 64.5 4.8 58 29-88 7-75 (170)
167 TIGR02251 HIF-SF_euk Dullard-l 97.7 8.6E-05 1.9E-09 64.6 6.9 39 313-352 102-140 (162)
168 TIGR01511 ATPase-IB1_Cu copper 97.7 0.00023 5E-09 74.2 11.0 45 29-73 384-432 (562)
169 TIGR01525 ATPase-IB_hvy heavy 97.7 0.00027 5.9E-09 73.7 11.3 57 29-87 363-424 (556)
170 TIGR01422 phosphonatase phosph 97.7 9.7E-05 2.1E-09 68.9 7.3 53 46-100 99-151 (253)
171 PRK10725 fructose-1-P/6-phosph 97.7 0.0001 2.2E-09 65.3 6.8 49 47-100 89-137 (188)
172 TIGR01512 ATPase-IB2_Cd heavy 97.7 0.00023 5E-09 73.9 10.1 56 319-378 421-479 (536)
173 PF03767 Acid_phosphat_B: HAD 97.7 3.8E-05 8.3E-10 70.7 3.9 61 29-89 71-159 (229)
174 TIGR01454 AHBA_synth_RP 3-amin 97.6 0.00011 2.4E-09 66.2 6.4 53 44-99 73-125 (205)
175 TIGR01675 plant-AP plant acid 97.6 0.00012 2.6E-09 66.9 6.6 62 29-90 76-165 (229)
176 COG4087 Soluble P-type ATPase 97.6 0.00093 2E-08 54.8 10.4 64 315-379 85-148 (152)
177 TIGR01449 PGP_bact 2-phosphogl 97.6 0.00015 3.2E-09 65.5 6.7 52 45-99 84-135 (213)
178 TIGR01491 HAD-SF-IB-PSPlk HAD- 97.6 0.00017 3.7E-09 64.4 6.9 41 46-88 80-120 (201)
179 KOG2961 Predicted hydrolase (H 97.6 0.00019 4.2E-09 60.1 6.4 61 299-359 110-175 (190)
180 PRK06698 bifunctional 5'-methy 97.6 0.00013 2.8E-09 74.3 6.4 51 47-100 331-381 (459)
181 PLN02940 riboflavin kinase 97.5 0.00015 3.3E-09 71.9 6.4 52 46-100 93-145 (382)
182 COG2503 Predicted secreted aci 97.5 0.00023 5.1E-09 64.3 6.8 63 29-91 78-169 (274)
183 TIGR01544 HAD-SF-IE haloacid d 97.5 0.001 2.2E-08 62.6 11.5 41 45-87 120-160 (277)
184 PHA02597 30.2 hypothetical pro 97.4 0.0003 6.5E-09 62.9 6.2 30 46-76 74-103 (197)
185 PF06437 ISN1: IMP-specific 5' 97.4 0.006 1.3E-07 59.0 14.9 56 29-84 146-205 (408)
186 TIGR01522 ATPase-IIA2_Ca golgi 97.4 0.0014 3.1E-08 72.0 12.3 62 313-378 607-671 (884)
187 TIGR01680 Veg_Stor_Prot vegeta 97.4 0.0004 8.6E-09 64.7 6.6 61 29-89 100-189 (275)
188 TIGR01549 HAD-SF-IA-v1 haloaci 97.4 0.00024 5.3E-09 60.7 4.8 29 47-75 65-93 (154)
189 PRK10748 flavin mononucleotide 97.4 0.0003 6.5E-09 65.1 5.7 42 49-99 116-157 (238)
190 TIGR02254 YjjG/YfnB HAD superf 97.3 0.00055 1.2E-08 62.2 6.9 51 46-100 97-147 (224)
191 PRK10563 6-phosphogluconate ph 97.3 0.00048 1E-08 62.8 6.3 40 46-90 88-127 (221)
192 COG3769 Predicted hydrolase (H 97.2 0.001 2.2E-08 59.4 6.4 58 29-89 6-64 (274)
193 PLN02919 haloacid dehalogenase 97.1 0.001 2.2E-08 74.3 7.9 52 47-100 162-213 (1057)
194 COG4229 Predicted enolase-phos 97.1 0.0079 1.7E-07 52.3 11.3 69 302-371 156-224 (229)
195 PF08235 LNS2: LNS2 (Lipin/Ned 97.1 0.0012 2.7E-08 56.6 6.1 41 32-74 1-53 (157)
196 PRK13582 thrH phosphoserine ph 97.0 0.0015 3.2E-08 58.7 6.6 39 47-88 69-107 (205)
197 PRK10671 copA copper exporting 96.9 0.0055 1.2E-07 67.1 10.9 60 315-378 704-765 (834)
198 PRK11590 hypothetical protein; 96.9 0.0015 3.3E-08 59.2 5.3 28 47-74 96-124 (211)
199 TIGR01993 Pyr-5-nucltdase pyri 96.8 0.0021 4.5E-08 56.8 5.1 47 47-99 85-131 (184)
200 TIGR01545 YfhB_g-proteo haloac 96.7 0.0025 5.4E-08 57.9 5.4 28 47-74 95-123 (210)
201 PF02358 Trehalose_PPase: Treh 96.7 0.023 5.1E-07 52.3 11.5 45 308-353 166-218 (235)
202 PF06941 NT5C: 5' nucleotidase 96.6 0.0029 6.3E-08 56.5 4.5 28 45-72 72-99 (191)
203 PRK11033 zntA zinc/cadmium/mer 96.5 0.0078 1.7E-07 64.9 8.0 57 29-87 547-607 (741)
204 TIGR01116 ATPase-IIA1_Ca sarco 96.5 0.027 5.9E-07 62.3 12.3 62 313-378 620-683 (917)
205 PLN03063 alpha,alpha-trehalose 96.4 0.25 5.5E-06 53.8 19.1 53 29-83 506-568 (797)
206 PLN02954 phosphoserine phospha 96.4 0.041 9E-07 50.0 11.3 49 231-282 10-58 (224)
207 TIGR03333 salvage_mtnX 2-hydro 96.3 0.0056 1.2E-07 55.6 5.1 28 46-73 70-97 (214)
208 KOG2914 Predicted haloacid-hal 96.3 0.0076 1.6E-07 54.9 5.8 30 46-75 92-121 (222)
209 COG4996 Predicted phosphatase 96.2 0.01 2.2E-07 48.8 5.0 58 31-90 1-83 (164)
210 COG1877 OtsB Trehalose-6-phosp 96.1 0.43 9.4E-06 44.8 16.6 52 29-82 17-75 (266)
211 TIGR02468 sucrsPsyn_pln sucros 96.0 0.13 2.7E-06 56.9 14.2 65 35-105 777-845 (1050)
212 TIGR01459 HAD-SF-IIA-hyp4 HAD- 96.0 0.0027 5.8E-08 58.9 1.3 35 310-345 82-116 (242)
213 PLN02645 phosphoglycolate phos 95.9 0.031 6.7E-07 53.9 8.1 38 311-349 99-136 (311)
214 TIGR01533 lipo_e_P4 5'-nucleot 95.8 0.034 7.5E-07 52.2 7.6 31 305-340 174-204 (266)
215 COG4359 Uncharacterized conser 95.7 0.23 5E-06 43.5 11.5 38 301-345 143-180 (220)
216 PF03031 NIF: NLI interacting 95.6 0.0077 1.7E-07 51.9 2.3 51 31-82 1-72 (159)
217 PF05761 5_nucleotid: 5' nucle 95.5 0.11 2.3E-06 52.6 10.4 42 312-353 284-326 (448)
218 TIGR02252 DREG-2 REG-2-like, H 95.4 0.025 5.5E-07 50.6 5.2 51 46-100 105-155 (203)
219 PF05152 DUF705: Protein of un 95.4 0.045 9.8E-07 51.1 6.8 74 29-105 121-198 (297)
220 PRK11590 hypothetical protein; 95.3 0.015 3.2E-07 52.8 3.4 44 233-278 6-52 (211)
221 TIGR02250 FCP1_euk FCP1-like p 95.2 0.033 7.2E-07 48.0 5.1 53 29-82 5-94 (156)
222 KOG3085 Predicted hydrolase (H 95.1 0.022 4.9E-07 52.2 3.8 50 48-101 115-164 (237)
223 TIGR00338 serB phosphoserine p 94.9 0.017 3.6E-07 52.4 2.5 19 231-249 12-30 (219)
224 PF06189 5-nucleotidase: 5'-nu 94.7 1.3 2.9E-05 41.0 14.1 47 62-110 36-83 (264)
225 smart00775 LNS2 LNS2 domain. T 94.0 0.32 7E-06 41.9 8.4 39 308-347 103-142 (157)
226 PF11019 DUF2608: Protein of u 93.2 0.67 1.4E-05 43.3 9.6 43 49-91 84-127 (252)
227 PF06888 Put_Phosphatase: Puta 93.2 0.42 9.1E-06 44.0 8.0 46 309-355 152-201 (234)
228 PF06888 Put_Phosphatase: Puta 93.1 0.32 7E-06 44.8 7.1 49 47-98 72-122 (234)
229 TIGR01452 PGP_euk phosphoglyco 92.8 0.17 3.7E-06 47.9 5.0 36 311-348 73-108 (279)
230 TIGR01517 ATPase-IIB_Ca plasma 92.7 1.2 2.6E-05 49.6 12.2 49 39-89 572-620 (941)
231 PRK05301 pyrroloquinoline quin 92.6 0.82 1.8E-05 45.3 9.9 120 42-193 68-190 (378)
232 PRK10444 UMP phosphatase; Prov 92.3 0.65 1.4E-05 43.3 8.1 119 233-354 1-145 (248)
233 PLN03064 alpha,alpha-trehalose 92.0 0.24 5.2E-06 54.4 5.5 54 29-84 590-659 (934)
234 TIGR01456 CECR5 HAD-superfamil 92.0 0.19 4.1E-06 48.7 4.3 21 235-255 2-22 (321)
235 TIGR01509 HAD-SF-IA-v3 haloaci 91.9 0.086 1.9E-06 45.9 1.7 19 235-253 1-19 (183)
236 PRK15126 thiamin pyrimidine py 91.9 0.087 1.9E-06 49.5 1.8 58 303-364 184-241 (272)
237 TIGR01548 HAD-SF-IA-hyp1 haloa 91.8 0.39 8.4E-06 42.7 5.9 52 46-100 106-157 (197)
238 PRK01158 phosphoglycolate phos 91.6 0.11 2.3E-06 47.4 2.0 45 302-347 152-196 (230)
239 TIGR02109 PQQ_syn_pqqE coenzym 91.3 1 2.2E-05 44.2 8.8 47 42-88 59-107 (358)
240 PRK10976 putative hydrolase; P 91.3 0.11 2.4E-06 48.6 1.8 47 304-352 187-233 (266)
241 PRK10517 magnesium-transportin 91.2 1.4 2.9E-05 48.9 10.4 46 41-88 545-590 (902)
242 PRK09552 mtnX 2-hydroxy-3-keto 91.1 0.13 2.8E-06 46.8 2.0 19 233-251 3-21 (219)
243 TIGR01106 ATPase-IIC_X-K sodiu 91.0 2.1 4.5E-05 48.1 11.7 43 44-88 566-608 (997)
244 TIGR02245 HAD_IIID1 HAD-superf 91.0 0.52 1.1E-05 42.2 5.7 57 29-88 20-84 (195)
245 TIGR01684 viral_ppase viral ph 90.7 0.36 7.9E-06 45.7 4.6 30 233-262 126-163 (301)
246 PTZ00174 phosphomannomutase; P 90.6 0.14 3E-06 47.6 1.8 39 308-351 189-231 (247)
247 COG3700 AphA Acid phosphatase 90.3 0.13 2.9E-06 44.6 1.2 29 325-354 186-214 (237)
248 PLN02811 hydrolase 90.0 0.42 9.1E-06 43.4 4.4 53 44-99 76-129 (220)
249 KOG2116 Protein involved in pl 89.9 0.93 2E-05 47.1 7.0 74 30-103 530-619 (738)
250 PRK10530 pyridoxal phosphate ( 89.8 0.18 3.9E-06 47.2 1.8 61 304-368 196-256 (272)
251 TIGR01647 ATPase-IIIA_H plasma 89.8 3.7 8.1E-05 44.6 12.1 48 39-88 435-482 (755)
252 PRK15122 magnesium-transportin 89.6 2.5 5.3E-05 47.0 10.7 48 39-88 543-590 (903)
253 COG1011 Predicted hydrolase (H 89.5 0.26 5.6E-06 44.7 2.6 22 232-253 3-24 (229)
254 COG0647 NagD Predicted sugar p 89.4 0.64 1.4E-05 43.8 5.1 30 233-262 8-41 (269)
255 PRK10513 sugar phosphate phosp 89.1 0.21 4.6E-06 46.7 1.8 18 233-250 3-20 (270)
256 PF06941 NT5C: 5' nucleotidase 89.0 0.96 2.1E-05 40.1 5.8 47 327-377 139-185 (191)
257 PF00702 Hydrolase: haloacid d 88.9 0.24 5.2E-06 44.2 1.9 32 30-61 1-34 (215)
258 TIGR01524 ATPase-IIIB_Mg magne 88.8 3.6 7.8E-05 45.5 11.3 48 39-88 508-555 (867)
259 PRK11133 serB phosphoserine ph 88.8 5.1 0.00011 38.8 11.1 14 233-246 110-123 (322)
260 TIGR01523 ATPase-IID_K-Na pota 88.8 3.9 8.4E-05 46.2 11.6 43 44-88 644-686 (1053)
261 PRK00192 mannosyl-3-phosphogly 88.4 0.24 5.2E-06 46.6 1.6 46 303-350 187-233 (273)
262 PHA03398 viral phosphatase sup 88.4 1.2 2.5E-05 42.4 6.1 17 233-249 128-144 (303)
263 PF13344 Hydrolase_6: Haloacid 88.1 0.28 6E-06 38.9 1.6 20 236-255 1-20 (101)
264 COG4359 Uncharacterized conser 88.0 1.2 2.5E-05 39.2 5.4 45 303-355 56-100 (220)
265 TIGR01487 SPP-like sucrose-pho 87.7 0.33 7.1E-06 43.9 2.0 45 303-348 143-187 (215)
266 TIGR01689 EcbF-BcbF capsule bi 87.7 0.33 7.1E-06 40.2 1.8 15 233-247 1-15 (126)
267 COG4850 Uncharacterized conser 87.6 1.2 2.5E-05 42.6 5.6 57 32-88 163-240 (373)
268 PLN02779 haloacid dehalogenase 87.6 0.58 1.3E-05 44.5 3.7 30 46-75 144-173 (286)
269 COG4996 Predicted phosphatase 87.1 0.89 1.9E-05 37.6 3.9 36 302-338 86-130 (164)
270 COG4229 Predicted enolase-phos 87.0 0.87 1.9E-05 39.9 4.0 30 46-75 103-132 (229)
271 TIGR01662 HAD-SF-IIIA HAD-supe 86.9 0.36 7.8E-06 39.9 1.7 14 234-247 1-14 (132)
272 COG3882 FkbH Predicted enzyme 86.8 0.73 1.6E-05 46.3 3.9 45 29-73 221-282 (574)
273 COG0561 Cof Predicted hydrolas 86.7 0.35 7.6E-06 45.1 1.6 24 232-255 2-25 (264)
274 TIGR01681 HAD-SF-IIIC HAD-supe 86.3 0.91 2E-05 37.5 3.8 37 305-342 88-126 (128)
275 TIGR01652 ATPase-Plipid phosph 86.3 5.4 0.00012 45.2 11.0 51 324-377 769-819 (1057)
276 TIGR01482 SPP-subfamily Sucros 86.2 0.46 9.9E-06 43.0 2.1 62 302-367 144-205 (225)
277 PLN03190 aminophospholipid tra 86.1 7.2 0.00016 44.5 11.8 54 324-380 872-925 (1178)
278 TIGR01489 DKMTPPase-SF 2,3-dik 86.0 0.42 9.1E-06 41.7 1.7 16 235-250 3-18 (188)
279 PRK08942 D,D-heptose 1,7-bisph 86.0 0.41 8.9E-06 42.0 1.6 17 231-247 1-17 (181)
280 COG3700 AphA Acid phosphatase 85.7 1.6 3.4E-05 38.1 4.9 41 50-91 118-159 (237)
281 TIGR01460 HAD-SF-IIA Haloacid 85.1 0.54 1.2E-05 43.3 2.0 20 236-255 1-20 (236)
282 KOG3189 Phosphomannomutase [Li 85.1 1.5 3.1E-05 39.1 4.5 38 31-69 12-50 (252)
283 TIGR01493 HAD-SF-IA-v2 Haloaci 85.1 0.31 6.8E-06 42.3 0.4 17 32-48 1-17 (175)
284 TIGR01670 YrbI-phosphatas 3-de 84.8 0.44 9.5E-06 40.8 1.2 14 233-246 1-14 (154)
285 PRK12702 mannosyl-3-phosphogly 84.1 0.56 1.2E-05 44.6 1.6 44 305-349 206-251 (302)
286 TIGR01545 YfhB_g-proteo haloac 83.8 0.6 1.3E-05 42.3 1.7 31 317-348 169-199 (210)
287 PLN02887 hydrolase family prot 82.9 0.72 1.6E-05 48.3 2.0 19 232-250 307-325 (580)
288 PRK09484 3-deoxy-D-manno-octul 82.7 0.62 1.4E-05 41.1 1.3 16 232-247 20-35 (183)
289 PRK08508 biotin synthase; Prov 82.5 44 0.00096 31.5 16.1 61 29-90 56-116 (279)
290 COG0560 SerB Phosphoserine pho 82.5 0.64 1.4E-05 42.2 1.3 52 309-360 104-176 (212)
291 KOG0207 Cation transport ATPas 82.4 17 0.00037 39.6 11.8 61 26-88 699-763 (951)
292 PRK03669 mannosyl-3-phosphogly 81.3 0.84 1.8E-05 42.9 1.7 48 303-352 183-233 (271)
293 TIGR01656 Histidinol-ppas hist 81.3 0.87 1.9E-05 38.5 1.6 15 234-248 1-15 (147)
294 PLN02423 phosphomannomutase 81.0 0.89 1.9E-05 42.2 1.7 30 322-352 199-232 (245)
295 COG0474 MgtA Cation transport 81.0 13 0.00029 41.4 11.1 45 44-90 545-589 (917)
296 TIGR02726 phenyl_P_delta pheny 80.6 0.82 1.8E-05 40.0 1.3 15 233-247 7-21 (169)
297 PF04312 DUF460: Protein of un 80.4 4.3 9.3E-05 33.9 5.3 51 32-83 45-96 (138)
298 KOG3109 Haloacid dehalogenase- 79.9 2.2 4.7E-05 38.6 3.7 15 29-43 14-28 (244)
299 COG2217 ZntA Cation transport 79.5 4 8.8E-05 43.8 6.2 54 32-88 519-577 (713)
300 TIGR01488 HAD-SF-IB Haloacid D 79.4 1.1 2.3E-05 38.8 1.6 14 236-249 2-15 (177)
301 PRK09456 ?-D-glucose-1-phospha 79.1 1.1 2.4E-05 39.8 1.7 15 235-249 2-16 (199)
302 PF12710 HAD: haloacid dehalog 79.0 2.5 5.3E-05 36.9 3.9 31 309-341 159-192 (192)
303 COG0731 Fe-S oxidoreductases [ 79.0 6.1 0.00013 37.7 6.6 63 29-104 79-142 (296)
304 TIGR01664 DNA-3'-Pase DNA 3'-p 78.7 1.1 2.5E-05 38.9 1.6 16 232-247 11-27 (166)
305 KOG2134 Polynucleotide kinase 78.5 2 4.4E-05 42.0 3.2 44 29-72 74-130 (422)
306 PF06189 5-nucleotidase: 5'-nu 77.6 4.3 9.3E-05 37.8 5.0 60 32-91 123-216 (264)
307 KOG2134 Polynucleotide kinase 77.4 2.3 4.9E-05 41.7 3.2 46 303-348 167-230 (422)
308 KOG4549 Magnesium-dependent ph 76.7 3.6 7.8E-05 33.9 3.7 26 47-72 45-70 (144)
309 PF12710 HAD: haloacid dehalog 76.5 3.4 7.4E-05 36.0 4.0 38 49-88 92-129 (192)
310 COG5083 SMP2 Uncharacterized p 76.3 5.6 0.00012 39.6 5.6 63 29-91 374-452 (580)
311 TIGR01490 HAD-SF-IB-hyp1 HAD-s 76.2 1.4 3E-05 39.1 1.4 15 236-250 2-16 (202)
312 TIGR02886 spore_II_AA anti-sig 76.2 9.4 0.0002 30.0 6.2 56 29-88 38-93 (106)
313 TIGR03470 HpnH hopanoid biosyn 75.9 19 0.00041 34.7 9.3 44 43-87 79-124 (318)
314 TIGR02461 osmo_MPG_phos mannos 75.8 1.5 3.2E-05 40.1 1.5 41 307-348 181-223 (225)
315 TIGR01457 HAD-SF-IIA-hyp2 HAD- 75.7 1.3 2.7E-05 41.2 1.1 30 233-262 1-34 (249)
316 TIGR01458 HAD-SF-IIA-hyp3 HAD- 75.1 1.3 2.7E-05 41.5 0.9 17 233-249 1-17 (257)
317 TIGR01497 kdpB K+-transporting 75.0 4.2 9.1E-05 43.5 4.8 57 30-88 426-486 (675)
318 TIGR02137 HSK-PSP phosphoserin 75.0 1.5 3.2E-05 39.5 1.3 14 234-247 2-15 (203)
319 cd01427 HAD_like Haloacid deha 74.7 1.3 2.9E-05 35.6 0.8 15 235-249 1-15 (139)
320 TIGR00685 T6PP trehalose-phosp 74.3 6.4 0.00014 36.3 5.4 13 234-246 4-16 (244)
321 PF03031 NIF: NLI interacting 74.0 1.5 3.4E-05 37.4 1.1 20 314-333 97-116 (159)
322 PF08645 PNK3P: Polynucleotide 73.6 1.8 4E-05 37.3 1.5 14 234-247 1-14 (159)
323 KOG3120 Predicted haloacid deh 72.8 4.4 9.6E-05 36.7 3.6 35 320-355 179-214 (256)
324 PRK01122 potassium-transportin 72.3 5.7 0.00012 42.5 5.0 57 30-88 425-485 (679)
325 TIGR00099 Cof-subfamily Cof su 72.2 11 0.00024 34.8 6.5 12 236-247 2-13 (256)
326 TIGR01658 EYA-cons_domain eyes 72.2 9.2 0.0002 35.3 5.6 51 302-355 211-261 (274)
327 PF08282 Hydrolase_3: haloacid 71.8 2.2 4.8E-05 38.6 1.7 47 303-351 182-228 (254)
328 KOG0202 Ca2+ transporting ATPa 71.7 45 0.00097 36.3 11.2 45 45-91 583-627 (972)
329 PRK14010 potassium-transportin 71.6 5.9 0.00013 42.4 4.9 48 39-88 434-481 (673)
330 PF01740 STAS: STAS domain; I 71.1 5.8 0.00013 31.7 3.8 55 30-88 48-102 (117)
331 COG1877 OtsB Trehalose-6-phosp 70.7 6.4 0.00014 37.0 4.4 14 233-246 18-31 (266)
332 KOG1615 Phosphoserine phosphat 69.9 13 0.00028 33.1 5.8 29 298-326 104-132 (227)
333 COG4030 Uncharacterized protei 69.6 12 0.00026 34.2 5.7 42 308-351 192-234 (315)
334 TIGR03470 HpnH hopanoid biosyn 69.3 9.1 0.0002 37.0 5.4 79 6-88 104-193 (318)
335 PF12689 Acid_PPase: Acid Phos 68.0 3.2 6.9E-05 36.3 1.7 15 233-247 3-17 (169)
336 TIGR02463 MPGP_rel mannosyl-3- 67.7 2.9 6.3E-05 37.7 1.5 43 305-348 177-219 (221)
337 TIGR01484 HAD-SF-IIB HAD-super 67.4 5 0.00011 35.6 3.0 13 236-248 2-14 (204)
338 COG4502 5'(3')-deoxyribonucleo 67.4 9.1 0.0002 32.2 4.1 26 46-72 68-93 (180)
339 PRK13361 molybdenum cofactor b 67.2 29 0.00063 33.6 8.5 48 40-88 65-116 (329)
340 cd07041 STAS_RsbR_RsbS_like Su 67.1 17 0.00036 28.6 5.7 57 29-89 40-96 (109)
341 TIGR01685 MDP-1 magnesium-depe 66.6 3.4 7.4E-05 36.2 1.7 15 232-246 1-15 (174)
342 cd06591 GH31_xylosidase_XylS X 66.5 14 0.0003 35.8 6.0 59 29-87 39-105 (319)
343 TIGR01486 HAD-SF-IIB-MPGP mann 66.0 3.4 7.3E-05 38.3 1.6 46 303-349 172-219 (256)
344 TIGR02666 moaA molybdenum cofa 65.2 31 0.00067 33.4 8.2 50 38-88 61-114 (334)
345 PRK11009 aphA acid phosphatase 65.1 3.1 6.7E-05 38.5 1.1 17 235-251 65-81 (237)
346 PLN02177 glycerol-3-phosphate 65.0 4.1 8.9E-05 41.9 2.1 20 30-49 22-41 (497)
347 KOG2630 Enolase-phosphatase E- 64.6 17 0.00037 33.2 5.7 70 304-374 178-249 (254)
348 PRK14502 bifunctional mannosyl 63.8 4.3 9.3E-05 43.1 2.0 44 305-349 611-656 (694)
349 COG5610 Predicted hydrolase (H 63.7 5.6 0.00012 39.9 2.6 53 300-352 151-203 (635)
350 KOG3120 Predicted haloacid deh 63.0 24 0.00052 32.2 6.2 39 48-88 86-125 (256)
351 TIGR02471 sucr_syn_bact_C sucr 62.9 5.1 0.00011 36.6 2.1 50 300-351 152-201 (236)
352 PRK08238 hypothetical protein; 62.0 8.4 0.00018 39.5 3.7 22 234-255 11-32 (479)
353 cd06844 STAS Sulphate Transpor 61.9 19 0.00041 28.0 5.0 56 29-88 38-93 (100)
354 cd06592 GH31_glucosidase_KIAA1 61.4 19 0.00041 34.5 5.9 59 29-87 45-109 (303)
355 TIGR02495 NrdG2 anaerobic ribo 61.0 15 0.00033 32.2 4.8 49 37-87 63-113 (191)
356 cd07043 STAS_anti-anti-sigma_f 61.0 24 0.00051 26.8 5.4 55 30-88 38-92 (99)
357 PF09419 PGP_phosphatase: Mito 60.2 4.9 0.00011 35.0 1.4 49 304-354 114-167 (168)
358 PRK10187 trehalose-6-phosphate 59.8 5.1 0.00011 37.6 1.6 14 234-247 15-28 (266)
359 TIGR00632 vsr DNA mismatch end 59.8 12 0.00027 30.5 3.5 42 29-71 55-116 (117)
360 COG3882 FkbH Predicted enzyme 59.7 24 0.00052 35.8 6.2 42 303-345 307-348 (574)
361 TIGR01657 P-ATPase-V P-type AT 58.7 20 0.00043 40.7 6.2 48 39-88 649-696 (1054)
362 TIGR01485 SPP_plant-cyano sucr 58.6 24 0.00052 32.4 5.9 12 235-246 3-14 (249)
363 PRK15452 putative protease; Pr 57.7 1.3E+02 0.0027 30.7 11.2 57 49-110 46-108 (443)
364 cd06598 GH31_transferase_CtsZ 57.3 27 0.00058 33.7 6.1 59 29-87 39-109 (317)
365 TIGR01370 cysRS possible cyste 56.9 44 0.00096 32.3 7.4 54 21-75 153-217 (315)
366 TIGR00377 ant_ant_sig anti-ant 56.4 30 0.00065 26.9 5.4 56 29-88 42-97 (108)
367 PF09587 PGA_cap: Bacterial ca 56.2 32 0.00069 31.8 6.3 70 17-88 26-107 (250)
368 TIGR00213 GmhB_yaeD D,D-heptos 55.6 6.6 0.00014 34.2 1.5 13 234-246 2-14 (176)
369 PRK13762 tRNA-modifying enzyme 55.5 41 0.00089 32.6 7.1 33 48-82 144-176 (322)
370 PRK10076 pyruvate formate lyas 54.8 14 0.00029 33.6 3.4 43 36-78 38-83 (213)
371 TIGR01494 ATPase_P-type ATPase 53.7 21 0.00046 36.7 5.1 56 29-87 326-386 (499)
372 KOG2470 Similar to IMP-GMP spe 53.0 12 0.00026 36.3 2.8 26 49-74 243-268 (510)
373 TIGR01261 hisB_Nterm histidino 51.3 9.4 0.0002 32.9 1.7 14 234-247 2-15 (161)
374 PF11019 DUF2608: Protein of u 50.7 40 0.00086 31.4 5.9 52 305-357 160-215 (252)
375 cd05008 SIS_GlmS_GlmD_1 SIS (S 50.4 18 0.0004 29.1 3.3 27 48-74 59-85 (126)
376 PRK06769 hypothetical protein; 50.1 9.5 0.00021 33.2 1.6 13 233-245 4-16 (173)
377 PRK14501 putative bifunctional 50.1 22 0.00048 38.5 4.7 14 233-246 492-505 (726)
378 cd05014 SIS_Kpsf KpsF-like pro 50.1 20 0.00043 29.0 3.4 28 47-74 59-86 (128)
379 PLN02205 alpha,alpha-trehalose 50.1 21 0.00045 39.4 4.5 16 231-246 594-609 (854)
380 cd01518 RHOD_YceA Member of th 49.9 50 0.0011 25.4 5.6 29 60-88 59-87 (101)
381 cd06595 GH31_xylosidase_XylS-l 49.5 25 0.00055 33.4 4.5 44 29-72 40-97 (292)
382 PF03767 Acid_phosphat_B: HAD 49.4 8.1 0.00018 35.5 1.1 18 233-250 72-89 (229)
383 cd01522 RHOD_1 Member of the R 49.3 41 0.00089 27.0 5.2 29 60-88 62-90 (117)
384 PRK13745 anaerobic sulfatase-m 47.2 48 0.001 33.2 6.4 79 6-88 105-196 (412)
385 TIGR01680 Veg_Stor_Prot vegeta 47.2 15 0.00032 34.6 2.5 19 234-252 102-120 (275)
386 TIGR02826 RNR_activ_nrdG3 anae 46.9 20 0.00044 30.4 3.1 51 16-71 46-97 (147)
387 COG2179 Predicted hydrolase of 46.8 11 0.00024 32.7 1.4 14 233-246 28-41 (175)
388 PF08235 LNS2: LNS2 (Lipin/Ned 46.5 11 0.00024 32.4 1.4 21 326-347 122-142 (157)
389 TIGR01663 PNK-3'Pase polynucle 46.5 12 0.00025 38.9 1.8 47 298-345 255-305 (526)
390 TIGR01686 FkbH FkbH-like domai 46.4 11 0.00024 36.3 1.6 15 233-247 3-17 (320)
391 COG0602 NrdG Organic radical a 45.9 19 0.0004 32.7 2.9 55 19-75 56-112 (212)
392 PF02358 Trehalose_PPase: Treh 45.8 18 0.00039 33.0 2.8 10 237-246 1-10 (235)
393 PF06014 DUF910: Bacterial pro 45.6 12 0.00026 26.8 1.2 25 312-341 7-31 (62)
394 COG1366 SpoIIAA Anti-anti-sigm 45.1 64 0.0014 25.8 5.7 56 29-88 43-98 (117)
395 PLN02177 glycerol-3-phosphate 45.1 12 0.00027 38.5 1.7 29 317-347 183-211 (497)
396 PLN03064 alpha,alpha-trehalose 44.9 32 0.0007 38.2 5.0 14 233-246 591-604 (934)
397 cd05710 SIS_1 A subgroup of th 43.2 30 0.00065 27.9 3.5 28 47-74 59-86 (120)
398 PLN02389 biotin synthase 42.9 3.5E+02 0.0076 26.9 14.5 42 47-90 151-192 (379)
399 COG5083 SMP2 Uncharacterized p 42.6 13 0.00029 37.1 1.4 48 300-350 468-520 (580)
400 cd06603 GH31_GANC_GANAB_alpha 41.7 55 0.0012 31.8 5.7 59 29-87 39-105 (339)
401 TIGR01691 enolase-ppase 2,3-di 41.7 22 0.00048 32.4 2.6 32 30-61 1-36 (220)
402 TIGR03278 methan_mark_10 putat 41.5 49 0.0011 33.1 5.3 53 36-88 73-130 (404)
403 smart00577 CPDc catalytic doma 39.7 18 0.00039 30.5 1.7 15 234-248 3-17 (148)
404 cd01523 RHOD_Lact_B Member of 39.1 46 0.00099 25.6 3.8 28 61-88 60-87 (100)
405 cd05017 SIS_PGI_PMI_1 The memb 38.7 35 0.00075 27.5 3.2 26 47-72 55-80 (119)
406 PF09547 Spore_IV_A: Stage IV 38.2 55 0.0012 33.0 4.9 58 31-88 147-211 (492)
407 PF12694 MoCo_carrier: Putativ 37.8 29 0.00062 29.4 2.5 35 34-68 61-96 (145)
408 TIGR03365 Bsubt_queE 7-cyano-7 37.7 35 0.00076 31.4 3.4 39 37-75 73-113 (238)
409 COG1180 PflA Pyruvate-formate 37.6 57 0.0012 30.5 4.8 45 31-75 77-125 (260)
410 COG3727 Vsr DNA G:T-mismatch r 37.6 51 0.0011 27.4 3.8 19 27-46 54-72 (150)
411 TIGR00524 eIF-2B_rel eIF-2B al 37.3 3.8E+02 0.0082 25.7 11.4 55 34-89 116-181 (303)
412 PF00072 Response_reg: Respons 37.3 1.2E+02 0.0027 23.0 6.2 61 19-88 33-95 (112)
413 PLN03017 trehalose-phosphatase 37.2 19 0.0004 35.6 1.5 12 234-245 112-123 (366)
414 KOG0203 Na+/K+ ATPase, alpha s 37.2 1.5E+02 0.0033 32.5 8.2 42 30-71 562-615 (1019)
415 COG5663 Uncharacterized conser 37.1 21 0.00045 31.1 1.6 40 315-358 129-168 (194)
416 cd07042 STAS_SulP_like_sulfate 37.0 77 0.0017 24.2 4.9 55 30-88 41-95 (107)
417 TIGR03127 RuMP_HxlB 6-phospho 36.9 39 0.00085 29.3 3.5 27 48-74 85-111 (179)
418 PF03537 Glyco_hydro_114: Glyc 36.5 58 0.0013 24.0 3.8 32 29-70 26-57 (74)
419 COG4483 Uncharacterized protei 36.4 36 0.00078 24.5 2.4 25 312-341 7-31 (68)
420 TIGR02668 moaA_archaeal probab 35.8 44 0.00096 31.7 3.9 48 40-88 60-110 (302)
421 PLN02499 glycerol-3-phosphate 35.7 23 0.00049 36.3 1.9 22 29-50 7-28 (498)
422 PTZ00445 p36-lilke protein; Pr 35.7 15 0.00033 33.2 0.6 14 233-246 43-56 (219)
423 PRK05320 rhodanese superfamily 35.6 1.8E+02 0.0039 27.1 7.8 28 61-88 174-201 (257)
424 cd05006 SIS_GmhA Phosphoheptos 35.4 43 0.00092 29.0 3.4 27 47-73 113-139 (177)
425 TIGR02251 HIF-SF_euk Dullard-l 35.2 23 0.00049 30.5 1.6 15 234-248 2-16 (162)
426 PLN02499 glycerol-3-phosphate 35.1 24 0.00053 36.1 2.0 17 233-249 8-24 (498)
427 PRK08335 translation initiatio 34.8 4E+02 0.0087 25.2 11.5 54 33-89 106-163 (275)
428 COG2185 Sbm Methylmalonyl-CoA 34.7 1.1E+02 0.0024 25.9 5.6 18 52-69 53-70 (143)
429 PRK05301 pyrroloquinoline quin 34.5 69 0.0015 31.5 5.1 68 20-88 106-184 (378)
430 cd06600 GH31_MGAM-like This fa 34.3 89 0.0019 30.1 5.7 44 29-72 39-87 (317)
431 cd06589 GH31 The enzymes of gl 34.1 63 0.0014 30.2 4.6 45 29-73 39-90 (265)
432 smart00729 Elp3 Elongator prot 34.0 3E+02 0.0065 23.5 9.9 53 36-88 51-112 (216)
433 COG0532 InfB Translation initi 33.3 75 0.0016 32.7 5.1 50 45-94 90-143 (509)
434 COG5663 Uncharacterized conser 33.2 43 0.00092 29.2 2.9 26 32-57 8-33 (194)
435 COG2216 KdpB High-affinity K+ 33.0 62 0.0013 33.4 4.4 80 7-88 404-487 (681)
436 TIGR02494 PFLE_PFLC glycyl-rad 32.5 68 0.0015 30.3 4.6 38 37-74 126-166 (295)
437 PLN03063 alpha,alpha-trehalose 32.5 64 0.0014 35.5 4.8 13 234-246 508-520 (797)
438 PLN02580 trehalose-phosphatase 32.4 25 0.00053 35.0 1.5 14 234-247 120-133 (384)
439 PRK06371 translation initiatio 32.4 4.8E+02 0.01 25.4 12.0 56 34-89 134-199 (329)
440 cd05013 SIS_RpiR RpiR-like pro 32.3 52 0.0011 26.5 3.3 25 49-73 74-98 (139)
441 PRK11145 pflA pyruvate formate 32.3 73 0.0016 29.2 4.6 38 37-74 71-111 (246)
442 PF06995 Phage_P2_GpU: Phage P 32.3 48 0.001 27.0 3.0 43 30-72 40-82 (121)
443 PF01380 SIS: SIS domain SIS d 32.2 51 0.0011 26.4 3.2 27 48-74 66-92 (131)
444 TIGR00441 gmhA phosphoheptose 32.2 53 0.0011 27.9 3.4 26 47-72 91-116 (154)
445 TIGR02245 HAD_IIID1 HAD-superf 32.1 26 0.00057 31.3 1.5 14 234-247 22-35 (195)
446 PRK11660 putative transporter; 32.0 97 0.0021 32.5 6.0 73 29-106 490-563 (568)
447 KOG2882 p-Nitrophenyl phosphat 31.6 25 0.00053 33.5 1.3 20 233-252 22-41 (306)
448 PLN02151 trehalose-phosphatase 31.5 26 0.00056 34.4 1.5 12 234-245 99-110 (354)
449 PRK13602 putative ribosomal pr 31.4 81 0.0018 23.8 3.9 46 43-88 8-55 (82)
450 PTZ00413 lipoate synthase; Pro 31.1 2.5E+02 0.0055 27.9 8.2 176 4-193 165-370 (398)
451 TIGR01668 YqeG_hyp_ppase HAD s 30.9 29 0.00063 30.0 1.6 15 233-247 25-39 (170)
452 COG1184 GCD2 Translation initi 30.9 4.9E+02 0.011 25.0 9.9 51 36-89 119-173 (301)
453 COG1911 RPL30 Ribosomal protei 30.7 53 0.0012 25.7 2.8 49 42-90 15-65 (100)
454 cd01444 GlpE_ST GlpE sulfurtra 30.7 1.1E+02 0.0023 23.0 4.7 58 30-88 15-82 (96)
455 cd06593 GH31_xylosidase_YicI Y 30.4 1.2E+02 0.0026 28.9 5.9 44 29-72 39-89 (308)
456 cd01037 Restriction_endonuclea 30.4 71 0.0015 22.4 3.5 39 31-69 38-79 (80)
457 PF05116 S6PP: Sucrose-6F-phos 30.2 54 0.0012 30.3 3.4 22 234-255 3-24 (247)
458 KOG3107 Predicted haloacid deh 30.1 91 0.002 30.8 4.8 47 302-352 406-452 (468)
459 cd06599 GH31_glycosidase_Aec37 29.8 1.3E+02 0.0028 28.9 6.1 72 14-87 31-112 (317)
460 cd05005 SIS_PHI Hexulose-6-pho 29.7 61 0.0013 28.1 3.4 27 48-74 88-114 (179)
461 cd03110 Fer4_NifH_child This p 29.7 1.9E+02 0.0041 24.7 6.6 14 28-41 91-104 (179)
462 PRK05772 translation initiatio 29.5 5.6E+02 0.012 25.3 12.1 58 33-90 163-231 (363)
463 PF04055 Radical_SAM: Radical 29.4 25 0.00054 29.1 0.9 40 49-88 60-102 (166)
464 TIGR01497 kdpB K+-transporting 29.1 83 0.0018 33.8 4.9 52 323-378 508-561 (675)
465 PRK13937 phosphoheptose isomer 29.1 62 0.0013 28.5 3.4 26 47-72 118-143 (188)
466 KOG0384 Chromodomain-helicase 29.0 1.1E+02 0.0025 34.8 5.9 40 51-90 688-727 (1373)
467 PF10740 DUF2529: Protein of u 28.9 30 0.00065 30.1 1.3 72 37-108 82-162 (172)
468 COG3457 Predicted amino acid r 28.8 3.9E+02 0.0084 25.9 8.6 59 46-109 12-70 (353)
469 cd06601 GH31_lyase_GLase GLase 28.8 97 0.0021 30.1 5.0 44 29-72 39-87 (332)
470 KOG0207 Cation transport ATPas 28.6 4.2E+02 0.0091 29.5 9.8 69 300-378 768-838 (951)
471 cd06594 GH31_glucosidase_YihQ 28.5 1E+02 0.0022 29.7 5.0 44 44-87 66-111 (317)
472 KOG2961 Predicted hydrolase (H 28.3 1.2E+02 0.0027 26.0 4.7 63 29-91 42-114 (190)
473 COG0826 Collagenase and relate 28.0 1.5E+02 0.0032 29.1 6.1 87 18-110 16-111 (347)
474 PRK10658 putative alpha-glucos 28.0 1.3E+02 0.0028 32.3 6.1 59 29-87 298-364 (665)
475 PF05240 APOBEC_C: APOBEC-like 28.0 62 0.0014 22.6 2.5 21 49-69 2-22 (55)
476 cd07018 S49_SppA_67K_type Sign 27.9 93 0.002 28.2 4.4 52 18-70 35-86 (222)
477 PRK07475 hypothetical protein; 27.7 1.8E+02 0.0039 26.8 6.4 72 13-88 63-146 (245)
478 COG1856 Uncharacterized homolo 27.6 3.7E+02 0.008 24.8 7.9 75 29-107 55-130 (275)
479 PF13394 Fer4_14: 4Fe-4S singl 27.5 8.1 0.00018 31.0 -2.4 37 39-75 50-93 (119)
480 COG1501 Alpha-glucosidases, fa 27.4 1.2E+02 0.0027 33.1 5.9 61 29-89 295-362 (772)
481 TIGR02250 FCP1_euk FCP1-like p 27.3 37 0.0008 29.1 1.6 17 234-250 7-23 (156)
482 TIGR02109 PQQ_syn_pqqE coenzym 27.2 1.1E+02 0.0023 29.8 5.1 80 6-88 85-175 (358)
483 cd06602 GH31_MGAM_SI_GAA This 27.1 90 0.0019 30.4 4.4 44 29-72 39-89 (339)
484 cd01335 Radical_SAM Radical SA 27.0 1.4E+02 0.0031 25.2 5.4 40 49-88 59-100 (204)
485 PRK14556 pyrH uridylate kinase 27.0 2.4E+02 0.0052 26.2 7.0 41 29-69 164-226 (249)
486 COG3769 Predicted hydrolase (H 26.9 36 0.00078 31.1 1.4 44 304-351 190-235 (274)
487 PF06434 Aconitase_2_N: Aconit 26.8 49 0.0011 29.4 2.2 41 46-87 37-82 (204)
488 TIGR02495 NrdG2 anaerobic ribo 26.7 1.4E+02 0.0031 25.9 5.3 50 20-69 104-160 (191)
489 PTZ00106 60S ribosomal protein 26.6 83 0.0018 25.2 3.4 48 41-88 20-69 (108)
490 smart00481 POLIIIAc DNA polyme 26.6 1.4E+02 0.0031 20.9 4.4 38 51-88 17-56 (67)
491 COG5610 Predicted hydrolase (H 26.5 1.5E+02 0.0032 30.2 5.7 50 50-100 103-152 (635)
492 PF11576 DUF3236: Protein of u 26.4 44 0.00095 28.1 1.7 39 50-88 23-61 (154)
493 TIGR03865 PQQ_CXXCW PQQ-depend 26.0 1.9E+02 0.0041 24.8 5.8 28 61-88 115-143 (162)
494 PLN02382 probable sucrose-phos 25.8 38 0.00082 34.0 1.6 13 235-247 11-23 (413)
495 PRK06186 hypothetical protein; 25.8 58 0.0013 29.9 2.6 33 34-66 51-86 (229)
496 TIGR03822 AblA_like_2 lysine-2 25.2 4.1E+02 0.0089 25.6 8.6 51 37-87 137-198 (321)
497 KOG2470 Similar to IMP-GMP spe 25.1 83 0.0018 30.7 3.6 42 312-353 335-377 (510)
498 COG4161 ArtP ABC-type arginine 24.8 87 0.0019 27.4 3.3 43 26-69 156-198 (242)
499 TIGR00705 SppA_67K signal pept 24.7 95 0.0021 32.8 4.3 55 17-71 81-135 (584)
500 PRK13938 phosphoheptose isomer 24.7 83 0.0018 28.1 3.4 27 47-73 125-151 (196)
No 1
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-43 Score=327.42 Aligned_cols=232 Identities=30% Similarity=0.557 Sum_probs=201.2
Q ss_pred cCCcEEEEeccccccCCCcCCccHHHHHHHHHHCCCeEEEEcCCCCCch-HHHHHHHh-CCCCCcccceEEeCchhHHHH
Q 016204 28 RRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRAS-TTIDKLKS-LGFDPSLFAGAITSGELTHQY 105 (393)
Q Consensus 28 ~~~k~i~~DlDGtL~~g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~~-~~~~~l~~-lG~~~~~~~~iits~~~~~~~ 105 (393)
++|++|+||+|||||+|+++||||.|+|+.|+++|++++|+|||+++++ .+.++|+. +|.+... ++|+||+.++++|
T Consensus 6 ~~y~~~l~DlDGvl~~G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~-~~i~TS~~at~~~ 84 (269)
T COG0647 6 DKYDGFLFDLDGVLYRGNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTP-DDIVTSGDATADY 84 (269)
T ss_pred hhcCEEEEcCcCceEeCCccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCH-HHeecHHHHHHHH
Confidence 3899999999999999999999999999999999999999999998885 59999999 5666776 9999999999999
Q ss_pred HHcccchhhhhcCCeEEEEccCCcccc-ccccCCceeeCCccC--cCEEEecCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 016204 106 LLRRDDAWFAALGRSCIHMTWSDRGAI-SLEGLGLKVVENVEE--ADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICA 182 (393)
Q Consensus 106 l~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (393)
+.++.. +++||+++ +.+.. +++++|+..+.+.+. +++|++ +.|+.++|+++.+++. +.
T Consensus 85 l~~~~~------~~kv~viG--~~~l~~~l~~~G~~~~~~~~~~~~d~Vv~----------g~d~~~~~e~l~~a~~-~i 145 (269)
T COG0647 85 LAKQKP------GKKVYVIG--EEGLKEELEGAGFELVDEEEPARVDAVVV----------GLDRTLTYEKLAEALL-AI 145 (269)
T ss_pred HHhhCC------CCEEEEEC--CcchHHHHHhCCcEEeccCCCCcccEEEE----------ecCCCCCHHHHHHHHH-HH
Confidence 998653 57888886 44444 899999998875444 578888 8899999999999986 55
Q ss_pred hCCCCEEeecCceeeeeCCceeecCCCcccccccccccchhhhhhhHHhcccEEEEecCCccccCHHHHHHHHHHHhcCC
Q 016204 183 SKKIPMVVANPDYVTVEARALRVMPGKDILVNEIFRPHNVAQEKYIISRMTDLILFDLKNFNLVSVDIIYSSHKLLSRNF 262 (393)
Q Consensus 183 ~~~~~~~~~n~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~M~k~iiFD~DGTL~ds~~~~~~~~~l~~~~~ 262 (393)
..|++|+++|||..+|.+++ ..||.|+
T Consensus 146 ~~g~~fI~tNpD~~~p~~~g--~~pgaGa--------------------------------------------------- 172 (269)
T COG0647 146 AAGAPFIATNPDLTVPTERG--LRPGAGA--------------------------------------------------- 172 (269)
T ss_pred HcCCcEEEeCCCccccCCCC--CccCcHH---------------------------------------------------
Confidence 66799999999999999887 5777554
Q ss_pred CCChHHHHHHHhCCCchHHHHHHHhhhhccccc-cccccccccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHH
Q 016204 263 SISKNFTFRNFIGLPFVYECVLIILGTLASKFE-KLGGEVRWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGAN 341 (393)
Q Consensus 263 ~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~ 341 (393)
+...++ .++.++...|||++.+|+.+++.++.++++++||||++.+||.+|+
T Consensus 173 ---------------------------i~~~~~~~tg~~~~~~GKP~~~i~~~al~~~~~~~~~~~mVGD~~~TDI~~a~ 225 (269)
T COG0647 173 ---------------------------IAALLEQATGREPTVIGKPSPAIYEAALEKLGLDRSEVLMVGDRLDTDILGAK 225 (269)
T ss_pred ---------------------------HHHHHHHhhCCcccccCCCCHHHHHHHHHHhCCCcccEEEEcCCchhhHHHHH
Confidence 233333 3456667999999999999999999999999999999999999999
Q ss_pred HcCCeEEEEcCCCCCccc
Q 016204 342 AAGIQSVFIIGGIHATEL 359 (393)
Q Consensus 342 ~aG~~~i~v~~G~~~~~~ 359 (393)
++|+.+++|.||.++.++
T Consensus 226 ~~G~~t~LV~TGv~~~~~ 243 (269)
T COG0647 226 AAGLDTLLVLTGVSSAED 243 (269)
T ss_pred HcCCCEEEEccCCCChhh
Confidence 999999999999997775
No 2
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-41 Score=308.74 Aligned_cols=283 Identities=22% Similarity=0.369 Sum_probs=225.2
Q ss_pred ccCCCchhhhhccHHHHhhhcCCcEEEEeccccccCCCcCCccHHHHHHHHHHCCCeEEEEcCCCCCc-hHHHHHHHhCC
Q 016204 8 QSNDPHLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRA-STTIDKLKSLG 86 (393)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~k~i~~DlDGtL~~g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~-~~~~~~l~~lG 86 (393)
|++.+++-+. +..+++++ ++++|+||+|||||.|..+|||+.|+++.|++.||+++|+|||+.++ +++.+|+.++|
T Consensus 3 ~~~~~~~~~~-~~~~e~l~--~~DtfifDcDGVlW~g~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG 79 (306)
T KOG2882|consen 3 QMMPRLISKS-EEARELLD--SFDTFIFDCDGVLWLGEKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLG 79 (306)
T ss_pred ccchHHHhhH-HHHHHHHh--hcCEEEEcCCcceeecCCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhC
Confidence 4444454444 88899999 99999999999999999999999999999999999999999999887 69999999999
Q ss_pred CC-CcccceEEeCchhHHHHHHcccchhhhhcCCeEEEEccCCcccc-ccccCCceeeCCcc-------CcCEEEecCC-
Q 016204 87 FD-PSLFAGAITSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAI-SLEGLGLKVVENVE-------EADFILAHGT- 156 (393)
Q Consensus 87 ~~-~~~~~~iits~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~g~~~~~~~~-------~~~~v~~~~~- 156 (393)
+. +.. ++|++|+.+++.||+++.. -+.++|+++ +.+.. +|++.|++...... ..+.+...++
T Consensus 80 ~~~v~e-~~i~ssa~~~a~ylk~~~~-----~~k~Vyvig--~~gi~~eL~~aG~~~~g~~~~~~~~~~~~~~~~~~~~d 151 (306)
T KOG2882|consen 80 FNSVKE-ENIFSSAYAIADYLKKRKP-----FGKKVYVIG--EEGIREELDEAGFEYFGGGPDGKDTDGAKSFVLSIGLD 151 (306)
T ss_pred ccccCc-ccccChHHHHHHHHHHhCc-----CCCeEEEec--chhhhHHHHHcCceeecCCCCcccccccccchhhcCCC
Confidence 98 666 9999999999999987762 167788775 34443 78888887654211 0111111111
Q ss_pred CCCC-CCCCCCCCCCHHHHHHHHHHHHhCCCCEEeecCceeeeeCCceeecCCCcccccccccccchhhhhhhHHhcccE
Q 016204 157 EGMG-LPSGDVRPMSLQDLEKILEICASKKIPMVVANPDYVTVEARALRVMPGKDILVNEIFRPHNVAQEKYIISRMTDL 235 (393)
Q Consensus 157 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~M~k~ 235 (393)
.+.| +.+++|..++|.++.+++.+++..++.|+++|.|.+.|-..+ ..+||.|.++
T Consensus 152 ~~VgAVvvg~D~hfsy~KL~kA~~yLqnP~clflatn~D~~~p~~~~-~~ipG~G~~v---------------------- 208 (306)
T KOG2882|consen 152 PDVGAVVVGYDEHFSYPKLMKALNYLQNPGCLFLATNRDATTPPTPG-VEIPGAGSFV---------------------- 208 (306)
T ss_pred CCCCEEEEecccccCHHHHHHHHHHhCCCCcEEEeccCccccCCCCC-eeccCCccHH----------------------
Confidence 1111 223889999999999999999999999999999999883222 4688876532
Q ss_pred EEEecCCccccCHHHHHHHHHHHhcCCCCChHHHHHHHhCCCchHHHHHHHhhhhccccccccccccccCCCcHHHHHHH
Q 016204 236 ILFDLKNFNLVSVDIIYSSHKLLSRNFSISKNFTFRNFIGLPFVYECVLIILGTLASKFEKLGGEVRWMGKPDKIIYKSA 315 (393)
Q Consensus 236 iiFD~DGTL~ds~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gKP~p~~~~~~ 315 (393)
.+....+++++...|||++.+++.+
T Consensus 209 -------------------------------------------------------~av~~~t~R~P~v~GKP~~~m~~~l 233 (306)
T KOG2882|consen 209 -------------------------------------------------------AAVKFATGRQPIVLGKPSTFMFEYL 233 (306)
T ss_pred -------------------------------------------------------HHHHHHhcCCCeecCCCCHHHHHHH
Confidence 2222346789999999999999999
Q ss_pred HHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCcccCCCCccccCChhHHHHHHHhcCCCCcEEecCcc
Q 016204 316 MAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATELGLDSYGEVADLSSVQTLVSKYDAYPSYVLPSFS 392 (393)
Q Consensus 316 ~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~~~~~~~~~i~~~~~l~~~l~~~~~~p~~~~~~l~ 392 (393)
+++++++|++++||||++.+||..++++|++|++|.||.++.++. ........+.|||++++++
T Consensus 234 ~~~~~i~psRt~mvGDRL~TDIlFG~~~G~~TLLvltGv~~led~-------------~~~~~~~~~~PDyy~~~l~ 297 (306)
T KOG2882|consen 234 LEKFNIDPSRTCMVGDRLDTDILFGKNCGFKTLLVLSGVTTLEDI-------------LEAQGDNKMVPDYYADSLG 297 (306)
T ss_pred HHHcCCCcceEEEEcccchhhhhHhhccCcceEEEecCcCcHHHH-------------HhcccccCCCCchHHhhHH
Confidence 999999999999999999999999999999999999999887743 2112355788888888775
No 3
>PRK10444 UMP phosphatase; Provisional
Probab=100.00 E-value=2.8e-38 Score=293.71 Aligned_cols=239 Identities=22% Similarity=0.388 Sum_probs=197.8
Q ss_pred CcEEEEeccccccCCCcCCccHHHHHHHHHHCCCeEEEEcCCCCCc-hHHHHHHHhCCCCCcccceEEeCchhHHHHHHc
Q 016204 30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRA-STTIDKLKSLGFDPSLFAGAITSGELTHQYLLR 108 (393)
Q Consensus 30 ~k~i~~DlDGtL~~g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~-~~~~~~l~~lG~~~~~~~~iits~~~~~~~l~~ 108 (393)
+|+|+||+|||||++++++||+.++|++|+++|++++|+|||++++ .++.++|+++|++... ++|+||+.+++.||++
T Consensus 1 ~~~v~~DlDGtL~~~~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~~~~-~~i~ts~~~~~~~L~~ 79 (248)
T PRK10444 1 IKNVICDIDGVLMHDNVAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPD-SVFYTSAMATADFLRR 79 (248)
T ss_pred CcEEEEeCCCceEeCCeeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCH-hhEecHHHHHHHHHHh
Confidence 5799999999999999999999999999999999999999999766 7899999999999988 9999999999999998
Q ss_pred ccchhhhhcCCeEEEEccCCcccc-ccccCCceeeCCccCcCEEEecCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCC
Q 016204 109 RDDAWFAALGRSCIHMTWSDRGAI-SLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKIP 187 (393)
Q Consensus 109 ~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (393)
+. +.++++++. .+.. ++++.|+++.. .++++|++ +.+..++|+++.++..++ +++++
T Consensus 80 ~~-------~~~v~~~g~--~~l~~~l~~~g~~~~~--~~~~~Vvv----------g~~~~~~~~~l~~a~~~l-~~g~~ 137 (248)
T PRK10444 80 QE-------GKKAYVIGE--GALIHELYKAGFTITD--INPDFVIV----------GETRSYNWDMMHKAAYFV-ANGAR 137 (248)
T ss_pred CC-------CCEEEEEcC--HHHHHHHHHCcCEecC--CCCCEEEE----------eCCCCCCHHHHHHHHHHH-HCCCE
Confidence 75 567777753 3333 77888887553 46778888 667889999999998755 67999
Q ss_pred EEeecCceeeeeCCceeecCCCcccccccccccchhhhhhhHHhcccEEEEecCCccccCHHHHHHHHHHHhcCCCCChH
Q 016204 188 MVVANPDYVTVEARALRVMPGKDILVNEIFRPHNVAQEKYIISRMTDLILFDLKNFNLVSVDIIYSSHKLLSRNFSISKN 267 (393)
Q Consensus 188 ~~~~n~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~M~k~iiFD~DGTL~ds~~~~~~~~~l~~~~~~~~~~ 267 (393)
++++|||...+ + ..|+.|
T Consensus 138 ~i~~n~D~~~~---g--~~~~~G--------------------------------------------------------- 155 (248)
T PRK10444 138 FIATNPDTHGR---G--FYPACG--------------------------------------------------------- 155 (248)
T ss_pred EEEECCCCCCC---C--CcCcHH---------------------------------------------------------
Confidence 99999999543 1 355533
Q ss_pred HHHHHHhCCCchHHHHHHHhhhhccccc-cccccccccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCe
Q 016204 268 FTFRNFIGLPFVYECVLIILGTLASKFE-KLGGEVRWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQ 346 (393)
Q Consensus 268 ~~~~~~~g~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~ 346 (393)
.+....+ ..+.++...|||+|.+|+.+++++++++++|+||||++.+||.+|+++|+.
T Consensus 156 ---------------------~~~~~l~~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~v~IGD~~~tDi~~A~~~G~~ 214 (248)
T PRK10444 156 ---------------------ALCAGIEKISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLE 214 (248)
T ss_pred ---------------------HHHHHHHHHhCCCccccCCCCHHHHHHHHHHcCCCcccEEEECCCcHHHHHHHHHcCCC
Confidence 2222222 345667778999999999999999999999999999966999999999999
Q ss_pred EEEEcCCCCCcccCCCCccccCChhHHHHHHHhcCCCCcEEecCc
Q 016204 347 SVFIIGGIHATELGLDSYGEVADLSSVQTLVSKYDAYPSYVLPSF 391 (393)
Q Consensus 347 ~i~v~~G~~~~~~~~~~~~~i~~~~~l~~~l~~~~~~p~~~~~~l 391 (393)
+++|.||.++.+. ++....+|+|+++++
T Consensus 215 ~vlV~~G~~~~~~-----------------l~~~~~~pd~~~~sl 242 (248)
T PRK10444 215 TILVLSGVSTLDD-----------------IDSMPFRPSWIYPSV 242 (248)
T ss_pred EEEECCCCCCHHH-----------------HhcCCCCCCEEECCH
Confidence 9999999988664 233456677777765
No 4
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=100.00 E-value=3.1e-37 Score=287.65 Aligned_cols=244 Identities=22% Similarity=0.373 Sum_probs=200.4
Q ss_pred CcEEEEeccccccCCCcCCccHHHHHHHHHHCCCeEEEEcCCCCCc-hHHHHHHHhCCCCCcccceEEeCchhHHHHHHc
Q 016204 30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRA-STTIDKLKSLGFDPSLFAGAITSGELTHQYLLR 108 (393)
Q Consensus 30 ~k~i~~DlDGtL~~g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~-~~~~~~l~~lG~~~~~~~~iits~~~~~~~l~~ 108 (393)
||+|+||+|||||++++++|+|.++|++|+++|++++|+|||+.++ ..+.++|+++|++... ++|+||+.+++.|+++
T Consensus 1 ~~~~~~D~DGtl~~~~~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~~~-~~iit~~~~~~~~l~~ 79 (249)
T TIGR01457 1 YKGYLIDLDGTMYKGKERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPATL-ETVFTASMATADYMND 79 (249)
T ss_pred CCEEEEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCh-hhEeeHHHHHHHHHHh
Confidence 6899999999999999999999999999999999999999988554 7899999999999887 9999999999999998
Q ss_pred ccchhhhhcCCeEEEEccCCcccc-ccccCCceeeCCccCcCEEEecCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCC
Q 016204 109 RDDAWFAALGRSCIHMTWSDRGAI-SLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKIP 187 (393)
Q Consensus 109 ~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (393)
+.. ++++++++. .+.. +++++|++... +++++|++ +.+..++|+++.+++..+ +.|++
T Consensus 80 ~~~------~~~v~~lg~--~~l~~~l~~~g~~~~~--~~~~~Vvv----------g~~~~~~y~~l~~a~~~l-~~g~~ 138 (249)
T TIGR01457 80 LKL------EKTVYVIGE--EGLKEAIKEAGYVEDK--EKPDYVVV----------GLDRQIDYEKFATATLAI-RKGAH 138 (249)
T ss_pred cCC------CCEEEEEcC--hhHHHHHHHcCCEecC--CCCCEEEE----------eCCCCCCHHHHHHHHHHH-HCCCe
Confidence 752 466777653 3333 77888987542 46788888 667889999999988755 57999
Q ss_pred EEeecCceeeeeCCceeecCCCcccccccccccchhhhhhhHHhcccEEEEecCCccccCHHHHHHHHHHHhcCCCCChH
Q 016204 188 MVVANPDYVTVEARALRVMPGKDILVNEIFRPHNVAQEKYIISRMTDLILFDLKNFNLVSVDIIYSSHKLLSRNFSISKN 267 (393)
Q Consensus 188 ~~~~n~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~M~k~iiFD~DGTL~ds~~~~~~~~~l~~~~~~~~~~ 267 (393)
++++|||..+|..++ ..++.|.
T Consensus 139 ~i~tN~D~~~~~~~~--~~~~~G~-------------------------------------------------------- 160 (249)
T TIGR01457 139 FIGTNGDLAIPTERG--LLPGNGS-------------------------------------------------------- 160 (249)
T ss_pred EEEECCCCCCCCCCC--CCCCcHH--------------------------------------------------------
Confidence 999999999996554 3455432
Q ss_pred HHHHHHhCCCchHHHHHHHhhhhccccc-cccccccccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCe
Q 016204 268 FTFRNFIGLPFVYECVLIILGTLASKFE-KLGGEVRWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQ 346 (393)
Q Consensus 268 ~~~~~~~g~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~ 346 (393)
+....+ ..+.+....+||+|.+|+.+++++++++++++||||++.+||.+|+++|++
T Consensus 161 ----------------------~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~ 218 (249)
T TIGR01457 161 ----------------------LITVLEVATGVKPVYIGKPNAIIMEKAVEHLGTEREETLMVGDNYLTDIRAGIDAGID 218 (249)
T ss_pred ----------------------HHHHHHHHhCCCccccCCChHHHHHHHHHHcCCCcccEEEECCCchhhHHHHHHcCCc
Confidence 222222 246677888999999999999999999999999999965899999999999
Q ss_pred EEEEcCCCCCcccCCCCccccCChhHHHHHHHhcCCCCcEEecCcc
Q 016204 347 SVFIIGGIHATELGLDSYGEVADLSSVQTLVSKYDAYPSYVLPSFS 392 (393)
Q Consensus 347 ~i~v~~G~~~~~~~~~~~~~i~~~~~l~~~l~~~~~~p~~~~~~l~ 392 (393)
+++|.+|.+..+. +......|+|++++++
T Consensus 219 ~v~v~~G~~~~~~-----------------~~~~~~~pd~~v~~l~ 247 (249)
T TIGR01457 219 TLLVHTGVTKAEE-----------------VAGLPIAPTHVVSSLA 247 (249)
T ss_pred EEEEcCCCCCHHH-----------------HhcCCCCCCEEeCChh
Confidence 9999999876553 2234567888888764
No 5
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=100.00 E-value=4.2e-36 Score=284.91 Aligned_cols=255 Identities=22% Similarity=0.330 Sum_probs=201.9
Q ss_pred CCcEEEEeccccccCCCcCCccHHHHHHHHHHCCCeEEEEcCCCCCc-hHHHHHHHhCCCCCcccceEEeCchhHHHHHH
Q 016204 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRA-STTIDKLKSLGFDPSLFAGAITSGELTHQYLL 107 (393)
Q Consensus 29 ~~k~i~~DlDGtL~~g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~-~~~~~~l~~lG~~~~~~~~iits~~~~~~~l~ 107 (393)
+|++|+||+|||||++++++||+.|+|++|+++|++++++|||+..+ .++.++|+++|++... ++|+||+.+++.||+
T Consensus 1 ~~~~~~~D~DGtl~~~~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~~-~~i~ts~~~~~~~l~ 79 (279)
T TIGR01452 1 RAQGFIFDCDGVLWLGERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGLA-EQLFSSALCAARLLR 79 (279)
T ss_pred CccEEEEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCh-hhEecHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999998665 6888999999999887 999999999999999
Q ss_pred cccchhhhhcCCeEEEEccCCcccc-ccccCCceeeCCc------------------cCcCEEEecCCCCCCCCCCCCCC
Q 016204 108 RRDDAWFAALGRSCIHMTWSDRGAI-SLEGLGLKVVENV------------------EEADFILAHGTEGMGLPSGDVRP 168 (393)
Q Consensus 108 ~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~g~~~~~~~------------------~~~~~v~~~~~~~~~~~~~~~~~ 168 (393)
++... +.++++++. .+.. +++++|++.+... +++++|++ +.+..
T Consensus 80 ~~~~~-----~~~v~~iG~--~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvv----------~~d~~ 142 (279)
T TIGR01452 80 QPPDA-----PKAVYVIGE--EGLRAELDAAGIRLAGDPSAGDGAAPRGSGAFMKLEENVGAVVV----------GYDEH 142 (279)
T ss_pred hhCcC-----CCEEEEEcC--HHHHHHHHHCCCEEecCcccccccchhhcccccccCCCCCEEEE----------ecCCC
Confidence 85311 467777753 2333 7888898865321 34667777 67889
Q ss_pred CCHHHHHHHHHHHHhCCCCEEeecCceeeeeCCceeecCCCcccccccccccchhhhhhhHHhcccEEEEecCCccccCH
Q 016204 169 MSLQDLEKILEICASKKIPMVVANPDYVTVEARALRVMPGKDILVNEIFRPHNVAQEKYIISRMTDLILFDLKNFNLVSV 248 (393)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~M~k~iiFD~DGTL~ds~ 248 (393)
++|+.+.++++.++++|..++++|++..++..... ..++.+.
T Consensus 143 ~~y~~i~~~l~~L~~~g~~~i~Tn~d~~~~~~~~~-~~~~~g~------------------------------------- 184 (279)
T TIGR01452 143 FSYAKLREACAHLREPGCLFVATNRDPWHPLSDGS-RTPGTGS------------------------------------- 184 (279)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEeCCCCCCCCcCCC-cccChHH-------------------------------------
Confidence 99999999999888888889999999877643321 1223111
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHhCCCchHHHHHHHhhhhccccccccccccccCCCcHHHHHHHHHHhCCCCCcEEE
Q 016204 249 DIIYSSHKLLSRNFSISKNFTFRNFIGLPFVYECVLIILGTLASKFEKLGGEVRWMGKPDKIIYKSAMAMVGVDACDSIA 328 (393)
Q Consensus 249 ~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gKP~p~~~~~~~~~lgi~~~~~v~ 328 (393)
.+.......+.+....+||+|.+|+.+++++|++|++|+|
T Consensus 185 ----------------------------------------~~~~i~~~~g~~~~~~gKP~p~~~~~~~~~~~~~~~~~lm 224 (279)
T TIGR01452 185 ----------------------------------------LVAAIETASGRQPLVVGKPSPYMFECITENFSIDPARTLM 224 (279)
T ss_pred ----------------------------------------HHHHHHHHhCCceeccCCCCHHHHHHHHHHhCCChhhEEE
Confidence 0111111235566778999999999999999999999999
Q ss_pred EecCchhhHHHHHHcCCeEEEEcCCCCCcccCCCCccccCChhHHHHHH--HhcCCCCcEEecCcc
Q 016204 329 VGDSLHHDIKGANAAGIQSVFIIGGIHATELGLDSYGEVADLSSVQTLV--SKYDAYPSYVLPSFS 392 (393)
Q Consensus 329 VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~~~~~~~~~i~~~~~l~~~l--~~~~~~p~~~~~~l~ 392 (393)
|||++.+||++|+++|+.+|+|.||.++.+.+ .... ......|||+++++.
T Consensus 225 IGD~~~tDI~~A~~aGi~si~V~~G~~~~~~l-------------~~~~~~~~~~~~Pd~~~~~l~ 277 (279)
T TIGR01452 225 VGDRLETDILFGHRCGMTTVLVLSGVSRLEEA-------------QEYLAAGQHDLVPDYVVESLA 277 (279)
T ss_pred ECCChHHHHHHHHHcCCcEEEECCCCCCHHHH-------------HhhhcccccCCCCCEEecccc
Confidence 99996699999999999999999999876642 1111 134678999999875
No 6
>PLN02645 phosphoglycolate phosphatase
Probab=100.00 E-value=5.5e-36 Score=288.03 Aligned_cols=266 Identities=20% Similarity=0.276 Sum_probs=207.0
Q ss_pred hhhccHHHHhhhcCCcEEEEeccccccCCCcCCccHHHHHHHHHHCCCeEEEEcCCCCCc-hHHHHHHHhCCCCCcccce
Q 016204 16 QTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRA-STTIDKLKSLGFDPSLFAG 94 (393)
Q Consensus 16 ~~~~~~~~~~~~~~~k~i~~DlDGtL~~g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~-~~~~~~l~~lG~~~~~~~~ 94 (393)
++.++++++++ +||+|+||+|||||++++++||+.|+|++|+++|++++|+|||++.+ .++.++|+++|++... ++
T Consensus 16 ~~~~~~~~~~~--~~~~~~~D~DGtl~~~~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~~-~~ 92 (311)
T PLN02645 16 LTLENADELID--SVETFIFDCDGVIWKGDKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVTE-EE 92 (311)
T ss_pred CCHHHHHHHHH--hCCEEEEeCcCCeEeCCccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCCh-hh
Confidence 45567888888 99999999999999999999999999999999999999999998766 6889999999999887 99
Q ss_pred EEeCchhHHHHHHcccchhhhhcCCeEEEEccCCcccc-ccccCCceeeCC------------------ccCcCEEEecC
Q 016204 95 AITSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAI-SLEGLGLKVVEN------------------VEEADFILAHG 155 (393)
Q Consensus 95 iits~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~g~~~~~~------------------~~~~~~v~~~~ 155 (393)
|++|+.++..|++.++.. -+.++++++ ..+.. ++++.|++.+.. ..+.++|++
T Consensus 93 I~ts~~~~~~~l~~~~~~----~~~~V~viG--~~~~~~~l~~~Gi~~~~g~~~~~~~~~~~~~~~~~~~~~i~aVvv-- 164 (311)
T PLN02645 93 IFSSSFAAAAYLKSINFP----KDKKVYVIG--EEGILEELELAGFQYLGGPEDGDKKIELKPGFLMEHDKDVGAVVV-- 164 (311)
T ss_pred EeehHHHHHHHHHhhccC----CCCEEEEEc--CHHHHHHHHHCCCEEecCccccccccccccccccccCCCCCEEEE--
Confidence 999999999999875411 034566654 33333 778888876431 123356777
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHh-CCCCEEeecCceeeeeCCceeecCCCcccccccccccchhhhhhhHHhccc
Q 016204 156 TEGMGLPSGDVRPMSLQDLEKILEICAS-KKIPMVVANPDYVTVEARALRVMPGKDILVNEIFRPHNVAQEKYIISRMTD 234 (393)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~n~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~M~k 234 (393)
+.|..++|+++..+..+++. .|+.++++|+|..++..... ..+|.|.+
T Consensus 165 --------g~d~~~~~~~l~~a~~~l~~~~g~~~i~tn~d~~~~~~~~~-~~~g~g~~---------------------- 213 (311)
T PLN02645 165 --------GFDRYINYYKIQYATLCIRENPGCLFIATNRDAVTHLTDAQ-EWAGAGSM---------------------- 213 (311)
T ss_pred --------ecCCCCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCCCCCC-CccchHHH----------------------
Confidence 77899999999999877664 69999999999977543321 23443221
Q ss_pred EEEEecCCccccCHHHHHHHHHHHhcCCCCChHHHHHHHhCCCchHHHHHHHhhhhccccccccccccccCCCcHHHHHH
Q 016204 235 LILFDLKNFNLVSVDIIYSSHKLLSRNFSISKNFTFRNFIGLPFVYECVLIILGTLASKFEKLGGEVRWMGKPDKIIYKS 314 (393)
Q Consensus 235 ~iiFD~DGTL~ds~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gKP~p~~~~~ 314 (393)
+.......+..+...|||+|.+|+.
T Consensus 214 -------------------------------------------------------~~~i~~~~~~~~~~~gKP~p~~~~~ 238 (311)
T PLN02645 214 -------------------------------------------------------VGAIKGSTEREPLVVGKPSTFMMDY 238 (311)
T ss_pred -------------------------------------------------------HHHHHHHhCCCcccCCCChHHHHHH
Confidence 1111122344556679999999999
Q ss_pred HHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCcccC------CCCccccCChhHHHHHHH
Q 016204 315 AMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATELG------LDSYGEVADLSSVQTLVS 378 (393)
Q Consensus 315 ~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~~~------~~~~~~i~~~~~l~~~l~ 378 (393)
+++++++++++++||||++.+||.+|+++|+.+|+|.||.+..+.+ ..++++++++.+|.++++
T Consensus 239 a~~~~~~~~~~~~~VGD~~~~Di~~A~~aG~~~ilV~~G~~~~~~~~~~~~~~~pd~~~~~~~~l~~~~~ 308 (311)
T PLN02645 239 LANKFGIEKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSESMLLSPENKIQPDFYTSKISDFLTLKA 308 (311)
T ss_pred HHHHcCCCcccEEEEcCCcHHHHHHHHHcCCCEEEEcCCCCCHHHHHhccCCCCCCEEECCHHHHHHHhh
Confidence 9999999999999999996699999999999999999999876542 246677777777766543
No 7
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=100.00 E-value=1.5e-32 Score=257.22 Aligned_cols=243 Identities=18% Similarity=0.279 Sum_probs=185.7
Q ss_pred CcEEEEeccccccCCCc----CCccHHHHHHHHHHCCCeEEEEcCCCCCc-hHHHHHHHhCCCCCcccceEEeCchhHHH
Q 016204 30 FKAWLLDQFGVLHDGKK----PYPGAISTLEMLATTGAKMVVISNSSRRA-STTIDKLKSLGFDPSLFAGAITSGELTHQ 104 (393)
Q Consensus 30 ~k~i~~DlDGtL~~g~~----~ipga~eal~~L~~~G~~v~~~TN~~~~~-~~~~~~l~~lG~~~~~~~~iits~~~~~~ 104 (393)
+|+|+||+|||||++++ ++||+.++|++|+++|++++|+|||+.++ +++.++|+++|++... ++|+||+.+++.
T Consensus 1 ~k~i~~D~DGtl~~~~~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~~~-~~i~ts~~~~~~ 79 (257)
T TIGR01458 1 VKGVLLDISGVLYISDAKSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFDISE-DEVFTPAPAARQ 79 (257)
T ss_pred CCEEEEeCCCeEEeCCCcccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCCCCH-HHeEcHHHHHHH
Confidence 47999999999999988 99999999999999999999999999776 6899999999999887 999999999999
Q ss_pred HHHcccchhhhhcCCeEEEEccCCccccccccCCceeeCCccCcCEEEecCCCCCCCCCCCC-CCCCHHHHHHHHHHHHh
Q 016204 105 YLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDV-RPMSLQDLEKILEICAS 183 (393)
Q Consensus 105 ~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 183 (393)
||++++ .++++++.. .-..++. |+. ..++++|++ +.+ ..++|+++.++++.++.
T Consensus 80 ~l~~~~--------~~~~~~g~~-~~~~~~~--~~~----~~~~~~Vv~----------g~~~~~~~y~~l~~a~~~L~~ 134 (257)
T TIGR01458 80 LLEEKQ--------LRPMLLVDD-RVLPDFD--GID----TSDPNCVVM----------GLAPEHFSYQILNQAFRLLLD 134 (257)
T ss_pred HHHhcC--------CCeEEEECc-cHHHHhc--cCC----CCCCCEEEE----------ecccCccCHHHHHHHHHHHHc
Confidence 998764 456665532 1111333 332 245677777 453 47999999999987776
Q ss_pred CCCC-EEeecCceeeeeCCceeecCCCcccccccccccchhhhhhhHHhcccEEEEecCCccccCHHHHHHHHHHHhcCC
Q 016204 184 KKIP-MVVANPDYVTVEARALRVMPGKDILVNEIFRPHNVAQEKYIISRMTDLILFDLKNFNLVSVDIIYSSHKLLSRNF 262 (393)
Q Consensus 184 ~~~~-~~~~n~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~M~k~iiFD~DGTL~ds~~~~~~~~~l~~~~~ 262 (393)
.+.+ ++++|++..++.... ..+|.|.+
T Consensus 135 ~~~~~~iatn~~~~~~~~~~--~~~g~g~~-------------------------------------------------- 162 (257)
T TIGR01458 135 GAKPLLIAIGKGRYYKRKDG--LALDVGPF-------------------------------------------------- 162 (257)
T ss_pred CCCCEEEEeCCCCCCcCCCC--CCCCchHH--------------------------------------------------
Confidence 6554 556688888875433 12332211
Q ss_pred CCChHHHHHHHhCCCchHHHHHHHhhhhccccccccccccccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHH
Q 016204 263 SISKNFTFRNFIGLPFVYECVLIILGTLASKFEKLGGEVRWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANA 342 (393)
Q Consensus 263 ~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~ 342 (393)
+.......+..+...+||+|.+|+.++++++++|++++||||++.+||.+|++
T Consensus 163 ---------------------------~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~~~vGD~~~~Di~~a~~ 215 (257)
T TIGR01458 163 ---------------------------VTALEYATDTKATVVGKPSKTFFLEALRATGCEPEEAVMIGDDCRDDVGGAQD 215 (257)
T ss_pred ---------------------------HHHHHHHhCCCceeecCCCHHHHHHHHHHhCCChhhEEEECCCcHHHHHHHHH
Confidence 11111123445566799999999999999999999999999996599999999
Q ss_pred cCCeEEEEcCCCCCccc----CCCCccccCChhHHHHHH
Q 016204 343 AGIQSVFIIGGIHATEL----GLDSYGEVADLSSVQTLV 377 (393)
Q Consensus 343 aG~~~i~v~~G~~~~~~----~~~~~~~i~~~~~l~~~l 377 (393)
+|+.+++|.+|.+..+. ...++++++++.++.+++
T Consensus 216 ~G~~~i~v~~G~~~~~~~~~~~~~pd~~~~sl~el~~~l 254 (257)
T TIGR01458 216 CGMRGIQVRTGKYRPSDEEKINVPPDLTCDSLPHAVDLI 254 (257)
T ss_pred cCCeEEEECCCCCChHHhcccCCCCCEEECCHHHHHHHH
Confidence 99999999999754321 145777888888887654
No 8
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=100.00 E-value=4.8e-31 Score=245.26 Aligned_cols=240 Identities=27% Similarity=0.410 Sum_probs=181.8
Q ss_pred HHHHhhhcCCcEEEEeccccccCCCcCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCC-cccceEEeCc
Q 016204 21 LRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP-SLFAGAITSG 99 (393)
Q Consensus 21 ~~~~~~~~~~k~i~~DlDGtL~~g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~-~~~~~iits~ 99 (393)
+++|++ +|++|+||+|||||++.+++||+.|+|++|+++|++++|+||++++...+.++|+++|++. .. +.|++++
T Consensus 1 ~~~~~~--~~~~~~~D~dG~l~~~~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~~-~~Ii~s~ 77 (242)
T TIGR01459 1 IFDLIN--DYDVFLLDLWGVIIDGNHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADLP-EMIISSG 77 (242)
T ss_pred Chhhhh--cCCEEEEecccccccCCccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCcccc-ceEEccH
Confidence 357888 9999999999999999999999999999999999999999998877667778999999987 54 9999999
Q ss_pred hhHHHHHHcccchhhhhcCCeEEEEccCCccccccccCCceeeCCccCcCEEEecCCCCCCCCCCCCCCCCHHHHHHHHH
Q 016204 100 ELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILE 179 (393)
Q Consensus 100 ~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (393)
.++..++.....+ ...-++++++++.+......++..+........++++|++.+ ..+..++|+.+.++++
T Consensus 78 ~~~~~~l~~~~~~-~~~~~~~~~~vGd~~~d~~~~~~~~~~~~~~~~~~~~vvv~~--------~~~~~~~~~~~~~~l~ 148 (242)
T TIGR01459 78 EIAVQMILESKKR-FDIRNGIIYLLGHLENDIINLMQCYTTDDENKANASLITIYR--------SENEKLDLDEFDELFA 148 (242)
T ss_pred HHHHHHHHhhhhh-ccCCCceEEEeCCcccchhhhcCCCccccCCcccCcEEEEcC--------CCcccCCHHHHHHHHH
Confidence 9888877643110 001135677776443323355555654333334567777632 1235588999999998
Q ss_pred HHHhCCCCEEeecCceeeeeCCceeecCCCcccccccccccchhhhhhhHHhcccEEEEecCCccccCHHHHHHHHHHHh
Q 016204 180 ICASKKIPMVVANPDYVTVEARALRVMPGKDILVNEIFRPHNVAQEKYIISRMTDLILFDLKNFNLVSVDIIYSSHKLLS 259 (393)
Q Consensus 180 ~~~~~~~~~~~~n~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~M~k~iiFD~DGTL~ds~~~~~~~~~l~~ 259 (393)
.+.++|++++++|+|..++.... ..++.+.
T Consensus 149 ~l~~~g~~~i~tN~d~~~~~~~~--~~~~~g~------------------------------------------------ 178 (242)
T TIGR01459 149 PIVARKIPNICANPDRGINQHGI--YRYGAGY------------------------------------------------ 178 (242)
T ss_pred HHHhCCCcEEEECCCEeccCCCc--eEecccH------------------------------------------------
Confidence 77788999999999999986433 2233221
Q ss_pred cCCCCChHHHHHHHhCCCchHHHHHHHhhhhccccccccccccccCCCcHHHHHHHHHHhCCC-CCcEEEEecCchhhHH
Q 016204 260 RNFSISKNFTFRNFIGLPFVYECVLIILGTLASKFEKLGGEVRWMGKPDKIIYKSAMAMVGVD-ACDSIAVGDSLHHDIK 338 (393)
Q Consensus 260 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gKP~p~~~~~~~~~lgi~-~~~~v~VGDsl~~Di~ 338 (393)
+....+..+.++...+||+|.+|+.++++++.. +++|+||||++.+||.
T Consensus 179 ------------------------------~~~~i~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~~vGD~~~~Di~ 228 (242)
T TIGR01459 179 ------------------------------YAELIKQLGGKVIYSGKPYPAIFHKALKECSNIPKNRMLMVGDSFYTDIL 228 (242)
T ss_pred ------------------------------HHHHHHHhCCcEecCCCCCHHHHHHHHHHcCCCCcccEEEECCCcHHHHH
Confidence 111112234556678999999999999999975 6799999999669999
Q ss_pred HHHHcCCeEEEEcC
Q 016204 339 GANAAGIQSVFIIG 352 (393)
Q Consensus 339 ~a~~aG~~~i~v~~ 352 (393)
+|+++|+.+++|.|
T Consensus 229 ~a~~~G~~~i~v~t 242 (242)
T TIGR01459 229 GANRLGIDTALVLT 242 (242)
T ss_pred HHHHCCCeEEEEeC
Confidence 99999999999975
No 9
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=99.97 E-value=5.4e-31 Score=243.83 Aligned_cols=224 Identities=32% Similarity=0.494 Sum_probs=174.3
Q ss_pred EEEeccccccCCCcCCccHHHHHHHHHHCCCeEEEEcCCCCCc-hHHHHHHHh-CCCCCcccceEEeCchhHHHHHHccc
Q 016204 33 WLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRA-STTIDKLKS-LGFDPSLFAGAITSGELTHQYLLRRD 110 (393)
Q Consensus 33 i~~DlDGtL~~g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~-~~~~~~l~~-lG~~~~~~~~iits~~~~~~~l~~~~ 110 (393)
|+||+|||||++.+++|+|.++|+.|+++|++++|+|||+.++ .++.++|.+ +|++... ++++||+.+++.|++++.
T Consensus 1 ~lfD~DGvL~~~~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~~-~~iits~~~~~~~l~~~~ 79 (236)
T TIGR01460 1 FLFDIDGVLWLGHKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVSP-DQIITSGSVTKDLLRQRF 79 (236)
T ss_pred CEEeCcCccCcCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCH-HHeeeHHHHHHHHHHHhC
Confidence 5899999999999999999999999999999999999998555 789999999 7999887 999999999999998754
Q ss_pred chhhhhcCCeEEEEccCCcccc-ccccCCcee--eCC------ccCcCEEEecCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 016204 111 DAWFAALGRSCIHMTWSDRGAI-SLEGLGLKV--VEN------VEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEIC 181 (393)
Q Consensus 111 ~~~~~~~g~~~~~~~~~~~~~~-~~~~~g~~~--~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (393)
. ++++++++. .+.. +++++|+++ ... ...+++|++ +.+..++|.++..+...+
T Consensus 80 ~------~~~v~v~G~--~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~vv~----------~~~~~~~~~~~~~a~~~l 141 (236)
T TIGR01460 80 E------GEKVYVIGV--GELRESLEGLGFRNDFFDDIDHLAIEKIPAAVIV----------GEPSDFSYDELAKAAYLL 141 (236)
T ss_pred C------CCEEEEECC--HHHHHHHHHcCCcCcccCcccccccCCCCeEEEE----------CCCCCcCHHHHHHHHHHH
Confidence 2 456777653 2333 788888862 211 112456666 667889999998888655
Q ss_pred HhCCCCEEeecCceeeeeCCceeecCCCcccccccccccchhhhhhhHHhcccEEEEecCCccccCHHHHHHHHHHHhcC
Q 016204 182 ASKKIPMVVANPDYVTVEARALRVMPGKDILVNEIFRPHNVAQEKYIISRMTDLILFDLKNFNLVSVDIIYSSHKLLSRN 261 (393)
Q Consensus 182 ~~~~~~~~~~n~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~M~k~iiFD~DGTL~ds~~~~~~~~~l~~~~ 261 (393)
.+.+++++++|||.+++...+ ...++.|.+
T Consensus 142 ~~~~~~~i~tN~d~~~~~~~g-~~~~~~g~~------------------------------------------------- 171 (236)
T TIGR01460 142 AEGDVPFIAANRDDLVRLGDG-RFRPGAGAI------------------------------------------------- 171 (236)
T ss_pred hCCCCeEEEECCCCCCCCCCC-cEeecchHH-------------------------------------------------
Confidence 543399999999987665433 233443221
Q ss_pred CCCChHHHHHHHhCCCchHHHHHHHhhhhccccccccccccccCCCcHHHHHHHHHHhCCCCCcE-EEEecCchhhHHHH
Q 016204 262 FSISKNFTFRNFIGLPFVYECVLIILGTLASKFEKLGGEVRWMGKPDKIIYKSAMAMVGVDACDS-IAVGDSLHHDIKGA 340 (393)
Q Consensus 262 ~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gKP~p~~~~~~~~~lgi~~~~~-v~VGDsl~~Di~~a 340 (393)
+.......+......+||+|.+|+.++++++++++++ +||||++.+||.+|
T Consensus 172 ----------------------------~~~i~~~~g~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A 223 (236)
T TIGR01460 172 ----------------------------AAGIKELSGREPTVVGKPSPAIYRAALNLLQARPERRDVMVGDNLRTDILGA 223 (236)
T ss_pred ----------------------------HHHHHHHhCceeeeecCCCHHHHHHHHHHhCCCCccceEEECCCcHHHHHHH
Confidence 1111122344555689999999999999999998887 99999955899999
Q ss_pred HHcCCeEEEEcCC
Q 016204 341 NAAGIQSVFIIGG 353 (393)
Q Consensus 341 ~~aG~~~i~v~~G 353 (393)
+++|+++++|.||
T Consensus 224 ~~~G~~~i~v~~G 236 (236)
T TIGR01460 224 KNAGFDTLLVLTG 236 (236)
T ss_pred HHCCCcEEEEecC
Confidence 9999999999886
No 10
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=99.97 E-value=2.9e-31 Score=256.25 Aligned_cols=249 Identities=22% Similarity=0.242 Sum_probs=180.4
Q ss_pred EEEEeccccccCCCcCCccHHHHHHHHHHC----CCeEEEEcCCCCCc-hHHHHHH-HhCCCCCcccceEEeCchhHHHH
Q 016204 32 AWLLDQFGVLHDGKKPYPGAISTLEMLATT----GAKMVVISNSSRRA-STTIDKL-KSLGFDPSLFAGAITSGELTHQY 105 (393)
Q Consensus 32 ~i~~DlDGtL~~g~~~ipga~eal~~L~~~----G~~v~~~TN~~~~~-~~~~~~l-~~lG~~~~~~~~iits~~~~~~~ 105 (393)
+|+||+|||||++..++|||.|+++.|+++ |++++|+|||+..+ +++.++| +++|++... ++|+++..++..+
T Consensus 2 ~~ifD~DGvL~~g~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~~~~-~~i~~s~~~~~~l 80 (321)
T TIGR01456 2 GFAFDIDGVLFRGKKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVDVSP-LQVIQSHSPYKSL 80 (321)
T ss_pred EEEEeCcCceECCccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCCCCH-HHHHhhhHHHHHH
Confidence 689999999999999999999999999999 99999999998665 6778887 889999988 9999999888777
Q ss_pred HHcccchhhhhcCCeEEEEccCCccccccccCCceeeCC---------------------------------ccCcCEEE
Q 016204 106 LLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVEN---------------------------------VEEADFIL 152 (393)
Q Consensus 106 l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~---------------------------------~~~~~~v~ 152 (393)
+.... .++++++.+. -..+++..|++.+.. ..++++|+
T Consensus 81 l~~~~--------~~v~viG~~~-~~~~l~~~G~~~vv~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aVv 151 (321)
T TIGR01456 81 VNKYE--------KRILAVGTGS-VRGVAEGYGFQNVVHQDEIVRYFRDIDPFSGMSDEQVREYSRDIPDLTTKRFDAVL 151 (321)
T ss_pred HHHcC--------CceEEEeChH-HHHHHHHcCCcccccHHHHHhcCCCCCcccccCHHHhhcccccccccCCCceeEEE
Confidence 75432 3566655321 122677788774311 02456677
Q ss_pred ecCCCCCCCCCCCCCCCCHHHHHHHHHHHHhC----------CCCEEeecCceeeeeCCceeecCCCcccccccccccch
Q 016204 153 AHGTEGMGLPSGDVRPMSLQDLEKILEICASK----------KIPMVVANPDYVTVEARALRVMPGKDILVNEIFRPHNV 222 (393)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~n~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 222 (393)
+ +.+....+.+++.+..+++.. +++++++|||..+|.+.+. ..+|.|+++.
T Consensus 152 v----------~~d~~~~~~~l~~~~~~l~~~g~~g~~~~~~~~~~i~~n~D~~~p~~~g~-~~~g~Ga~~~-------- 212 (321)
T TIGR01456 152 V----------FNDPVDWAADIQIISDALNSEGLPGEKSGKPSIPIYFSNQDLLWANEYKL-NRFGQGAFRL-------- 212 (321)
T ss_pred E----------ecCchHHhhhHHHHHHHHhCCCCcCCCCCCCCCCEEEeCCCEeeccCCCC-ceechHHHHH--------
Confidence 6 344555566777877766543 2789999999999976552 2466554321
Q ss_pred hhhhhhHHhcccEEEEecCCccccCHHHHHHHHHHHhcCCCCChHHHHHHHhCCCchHHHHHHHhhhhccccc-cccccc
Q 016204 223 AQEKYIISRMTDLILFDLKNFNLVSVDIIYSSHKLLSRNFSISKNFTFRNFIGLPFVYECVLIILGTLASKFE-KLGGEV 301 (393)
Q Consensus 223 ~~~~~~~~~M~k~iiFD~DGTL~ds~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~-~~~~~~ 301 (393)
.+...+. .++..+
T Consensus 213 ------------------------------------------------------------------~l~~~~~~~tg~~~ 226 (321)
T TIGR01456 213 ------------------------------------------------------------------LLERIYLELNGKPL 226 (321)
T ss_pred ------------------------------------------------------------------HHHHHHHHhcCCCc
Confidence 1111111 133332
Q ss_pred --cccCCCcHHHHHHHHHHh--------CC-----CCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCcccC---CCC
Q 016204 302 --RWMGKPDKIIYKSAMAMV--------GV-----DACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATELG---LDS 363 (393)
Q Consensus 302 --~~~gKP~p~~~~~~~~~l--------gi-----~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~~~---~~~ 363 (393)
...|||+|.+|+.+++.+ +. ++++++||||++.+||.+|+++|+.+|+|.||.++.++. ..+
T Consensus 227 ~~~~~GKP~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~mIGD~~~tDI~ga~~~G~~silV~tG~~~~~~~~~~~~p 306 (321)
T TIGR01456 227 QYYTLGKPTKLTYDFAEDVLIDWEKRLSGTKPSTSPFHALYMVGDNPASDIIGAQNYGWFSCLVKTGVYNGGDDLKECKP 306 (321)
T ss_pred ceEEcCCCChHHHHHHHHHHHHHHhhhccccccCCChheEEEEcCChhhhhhhHHhCCceEEEecccccCCCCCCCCCCC
Confidence 577999999999999888 43 457999999998899999999999999999997765532 124
Q ss_pred ccccCChhHHHH
Q 016204 364 YGEVADLSSVQT 375 (393)
Q Consensus 364 ~~~i~~~~~l~~ 375 (393)
+++++|+.++..
T Consensus 307 ~~vv~~l~e~~~ 318 (321)
T TIGR01456 307 TLIVNDVFDAVT 318 (321)
T ss_pred CEEECCHHHHHH
Confidence 455555555443
No 11
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=99.97 E-value=2.8e-29 Score=216.96 Aligned_cols=246 Identities=24% Similarity=0.362 Sum_probs=194.0
Q ss_pred hcCCcEEEEeccccccCCCcCCccHHHHHHHHHHCCCeEEEEcCCCCCc-hHHHHHHHhCCCCCcccceEEeCchhHHHH
Q 016204 27 TRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRA-STTIDKLKSLGFDPSLFAGAITSGELTHQY 105 (393)
Q Consensus 27 ~~~~k~i~~DlDGtL~~g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~-~~~~~~l~~lG~~~~~~~~iits~~~~~~~ 105 (393)
++.++++++|+-||||+...++|||+||+++||+.+.+|.|+||.+..+ +.+.++|+++||++.. ++|+||..++++|
T Consensus 4 ~~~v~gvLlDlSGtLh~e~~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~v~e-eei~tsl~aa~~~ 82 (262)
T KOG3040|consen 4 GRAVKGVLLDLSGTLHIEDAAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFDVSE-EEIFTSLPAARQY 82 (262)
T ss_pred ccccceEEEeccceEecccccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCCccH-HHhcCccHHHHHH
Confidence 4578999999999999999999999999999999999999999999877 6899999999999998 9999999999999
Q ss_pred HHcccchhhhhcCCeEEEEccCCccccccccC-CceeeCCccCcCEEEecCCCCCCCCCCCCCCCCHHHHHHHHHHHHhC
Q 016204 106 LLRRDDAWFAALGRSCIHMTWSDRGAISLEGL-GLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASK 184 (393)
Q Consensus 106 l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (393)
+.+++. + .+++.. +. .+++. |+. ..++..|+.+ ...+.|+|+.+.++++.+.+.
T Consensus 83 ~~~~~l-------r-P~l~v~-d~---a~~dF~gid----Ts~pn~VVig---------lape~F~y~~ln~AFrvL~e~ 137 (262)
T KOG3040|consen 83 LEENQL-------R-PYLIVD-DD---ALEDFDGID----TSDPNCVVIG---------LAPEGFSYQRLNRAFRVLLEM 137 (262)
T ss_pred HHhcCC-------C-ceEEEc-cc---chhhCCCcc----CCCCCeEEEe---------cCcccccHHHHHHHHHHHHcC
Confidence 998862 2 222221 11 11111 231 1355566652 225889999999999988885
Q ss_pred -CCCEEeecCceeeeeCCceeecCCCcccccccccccchhhhhhhHHhcccEEEEecCCccccCHHHHHHHHHHHhcCCC
Q 016204 185 -KIPMVVANPDYVTVEARALRVMPGKDILVNEIFRPHNVAQEKYIISRMTDLILFDLKNFNLVSVDIIYSSHKLLSRNFS 263 (393)
Q Consensus 185 -~~~~~~~n~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~M~k~iiFD~DGTL~ds~~~~~~~~~l~~~~~~ 263 (393)
...++..+..+.|-...+...-|| .+
T Consensus 138 ~k~~LIai~kgryykr~~Gl~lgpG--~f--------------------------------------------------- 164 (262)
T KOG3040|consen 138 KKPLLIAIGKGRYYKRVDGLCLGPG--PF--------------------------------------------------- 164 (262)
T ss_pred CCCeEEEecCceeeeeccccccCch--HH---------------------------------------------------
Confidence 488889999999887766544444 11
Q ss_pred CChHHHHHHHhCCCchHHHHHHHhhhhccccccccccccccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHc
Q 016204 264 ISKNFTFRNFIGLPFVYECVLIILGTLASKFEKLGGEVRWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAA 343 (393)
Q Consensus 264 ~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~a 343 (393)
+....-+++++....|||+|..|+.+++.+|++|++++||||.+..|+-+|++.
T Consensus 165 --------------------------v~aLeyatg~~a~vvGKP~~~fFe~al~~~gv~p~~aVMIGDD~~dDvgGAq~~ 218 (262)
T KOG3040|consen 165 --------------------------VAALEYATGCEATVVGKPSPFFFESALQALGVDPEEAVMIGDDLNDDVGGAQAC 218 (262)
T ss_pred --------------------------HHHhhhccCceEEEecCCCHHHHHHHHHhcCCChHHheEEccccccchhhHhhh
Confidence 112222467888999999999999999999999999999999999999999999
Q ss_pred CCeEEEEcCCCCCcccC----CCCccccCChhHHHHHH
Q 016204 344 GIQSVFIIGGIHATELG----LDSYGEVADLSSVQTLV 377 (393)
Q Consensus 344 G~~~i~v~~G~~~~~~~----~~~~~~i~~~~~l~~~l 377 (393)
||+.|+|+||..++.+. ..++...++|.+--+++
T Consensus 219 GMrgilVkTGK~rpsDe~k~~~~p~~~~d~f~~AVd~I 256 (262)
T KOG3040|consen 219 GMRGILVKTGKFRPSDEEKPPVPPDLTADNFADAVDLI 256 (262)
T ss_pred cceeEEeeccccCCcccccCCCCcchhhhhHHHHHHHH
Confidence 99999999999988432 34555666666555444
No 12
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=99.85 E-value=2e-21 Score=155.59 Aligned_cols=99 Identities=32% Similarity=0.517 Sum_probs=82.1
Q ss_pred EEEeccccccCCCcCCccHHHHHHHHHHCCCeEEEEcCCCCCc-hHHHHHHHhCCCCCcccceEEeCchhHHHHHHcccc
Q 016204 33 WLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRA-STTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRDD 111 (393)
Q Consensus 33 i~~DlDGtL~~g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~-~~~~~~l~~lG~~~~~~~~iits~~~~~~~l~~~~~ 111 (393)
|+||+|||||+|++++|||.|+|++|+++|++++|+|||++++ +++.++|+++|++... ++|+||+.+++.|++++..
T Consensus 1 ~l~D~dGvl~~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~-~~i~ts~~~~~~~l~~~~~ 79 (101)
T PF13344_consen 1 FLFDLDGVLYNGNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDE-DEIITSGMAAAEYLKEHKG 79 (101)
T ss_dssp EEEESTTTSEETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--G-GGEEEHHHHHHHHHHHHTT
T ss_pred CEEeCccEeEeCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCc-CEEEChHHHHHHHHHhcCC
Confidence 7999999999999999999999999999999999999999777 7999999999999998 9999999999999998532
Q ss_pred hhhhhcCCeEEEEccCCcccc-ccccCCce
Q 016204 112 AWFAALGRSCIHMTWSDRGAI-SLEGLGLK 140 (393)
Q Consensus 112 ~~~~~~g~~~~~~~~~~~~~~-~~~~~g~~ 140 (393)
++++++++. .+.. ++++.|++
T Consensus 80 ------~~~v~vlG~--~~l~~~l~~~G~e 101 (101)
T PF13344_consen 80 ------GKKVYVLGS--DGLREELREAGFE 101 (101)
T ss_dssp ------SSEEEEES---HHHHHHHHHTTEE
T ss_pred ------CCEEEEEcC--HHHHHHHHHcCCC
Confidence 678888763 2333 67777763
No 13
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=99.83 E-value=8.1e-20 Score=168.43 Aligned_cols=147 Identities=24% Similarity=0.238 Sum_probs=107.3
Q ss_pred hcccEEEEecCCccccCHHHHHHHH--HHHhcCCCCChHHHHHHHhCCCc-----------hH---HH------------
Q 016204 231 RMTDLILFDLKNFNLVSVDIIYSSH--KLLSRNFSISKNFTFRNFIGLPF-----------VY---EC------------ 282 (393)
Q Consensus 231 ~M~k~iiFD~DGTL~ds~~~~~~~~--~l~~~~~~~~~~~~~~~~~g~~~-----------~~---~~------------ 282 (393)
+|+|+|||||||||+||.+.+..++ .+.+++.+..+.+.++...|.+. .. +.
T Consensus 10 ~~~k~viFD~DGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (229)
T PRK13226 10 RFPRAVLFDLDGTLLDSAPDMLATVNAMLAARGRAPITLAQLRPVVSKGARAMLAVAFPELDAAARDALIPEFLQRYEAL 89 (229)
T ss_pred ccCCEEEEcCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhhhHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh
Confidence 5889999999999999999999999 77788876555444444444321 00 00
Q ss_pred -------------HHHH-------hhhhccccc------------------cccccccccCCCcHHHHHHHHHHhCCCCC
Q 016204 283 -------------VLII-------LGTLASKFE------------------KLGGEVRWMGKPDKIIYKSAMAMVGVDAC 324 (393)
Q Consensus 283 -------------~~~~-------~g~~~~~~~------------------~~~~~~~~~gKP~p~~~~~~~~~lgi~~~ 324 (393)
+++. ++++++... ..+.+....+||+|++|..+++++|++|+
T Consensus 90 ~~~~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~~p~ 169 (229)
T PRK13226 90 IGTQSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQRCAVLIGGDTLAERKPHPLPLLVAAERIGVAPT 169 (229)
T ss_pred hhhcCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchhcccEEEecCcCCCCCCCHHHHHHHHHHhCCChh
Confidence 0000 122222111 01334456789999999999999999999
Q ss_pred cEEEEecCchhhHHHHHHcCCeEEEEcCCCCCcc-cC--CCCccccCChhHHHHHHH
Q 016204 325 DSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATE-LG--LDSYGEVADLSSVQTLVS 378 (393)
Q Consensus 325 ~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~-~~--~~~~~~i~~~~~l~~~l~ 378 (393)
+|+||||+ .+|+++|+++|+.+|+|.+|..... .. ..++++++++++|.+.+.
T Consensus 170 ~~l~IGDs-~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~i~~~~el~~~~~ 225 (229)
T PRK13226 170 DCVYVGDD-ERDILAARAAGMPSVAALWGYRLHDDDPLAWQADVLVEQPQLLWNPAT 225 (229)
T ss_pred hEEEeCCC-HHHHHHHHHCCCcEEEEeecCCCCCcChhhcCCCeeeCCHHHHHHHhc
Confidence 99999999 7999999999999999999986332 22 568999999999887653
No 14
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.81 E-value=3e-19 Score=162.85 Aligned_cols=146 Identities=24% Similarity=0.282 Sum_probs=108.8
Q ss_pred ccEEEEecCCccccCHHHHHHHH--HHHhcCCCCChHHHHHHHhCCCchH----------HH------------------
Q 016204 233 TDLILFDLKNFNLVSVDIIYSSH--KLLSRNFSISKNFTFRNFIGLPFVY----------EC------------------ 282 (393)
Q Consensus 233 ~k~iiFD~DGTL~ds~~~~~~~~--~l~~~~~~~~~~~~~~~~~g~~~~~----------~~------------------ 282 (393)
+|+||||+||||+||...+..++ .+.+++....+.+.+...+|.+... +.
T Consensus 3 ~~~viFD~DGTL~ds~~~~~~a~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (214)
T PRK13288 3 INTVLFDLDGTLINTNELIISSFLHTLKTYYPNQYKREDVLPFIGPSLHDTFSKIDESKVEEMITTYREFNHEHHDELVT 82 (214)
T ss_pred ccEEEEeCCCcCccCHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCcCHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 79999999999999999999999 5667666544555556666654311 00
Q ss_pred -------HHHH-------hhhhcccccc------------------ccccccccCCCcHHHHHHHHHHhCCCCCcEEEEe
Q 016204 283 -------VLII-------LGTLASKFEK------------------LGGEVRWMGKPDKIIYKSAMAMVGVDACDSIAVG 330 (393)
Q Consensus 283 -------~~~~-------~g~~~~~~~~------------------~~~~~~~~gKP~p~~~~~~~~~lgi~~~~~v~VG 330 (393)
++.. ++++++.... .+.+....+||+|++|..++++++++|++++|||
T Consensus 83 ~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~~iG 162 (214)
T PRK13288 83 EYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDEFFDVVITLDDVEHAKPDPEPVLKALELLGAKPEEALMVG 162 (214)
T ss_pred cCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhceeEEEecCcCCCCCCCcHHHHHHHHHcCCCHHHEEEEC
Confidence 0000 2222222211 1445566789999999999999999999999999
Q ss_pred cCchhhHHHHHHcCCeEEEEcCCCCCcccC--CCCccccCChhHHHHHHHh
Q 016204 331 DSLHHDIKGANAAGIQSVFIIGGIHATELG--LDSYGEVADLSSVQTLVSK 379 (393)
Q Consensus 331 Dsl~~Di~~a~~aG~~~i~v~~G~~~~~~~--~~~~~~i~~~~~l~~~l~~ 379 (393)
|+ .+|+++|+++|+.+|+|.+|....+.+ ..++++++++.++.+++.+
T Consensus 163 Ds-~~Di~aa~~aG~~~i~v~~g~~~~~~l~~~~~~~~i~~~~~l~~~i~~ 212 (214)
T PRK13288 163 DN-HHDILAGKNAGTKTAGVAWTIKGREYLEQYKPDFMLDKMSDLLAIVGD 212 (214)
T ss_pred CC-HHHHHHHHHCCCeEEEEcCCCCCHHHHhhcCcCEEECCHHHHHHHHhh
Confidence 99 699999999999999999997655433 4688899999999887754
No 15
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=99.79 E-value=1.6e-18 Score=158.85 Aligned_cols=147 Identities=28% Similarity=0.316 Sum_probs=112.1
Q ss_pred cccEEEEecCCccccCHHHHHHHH--HHHhcCCCCChHHHHHHHhCCCchH--H-------------H------------
Q 016204 232 MTDLILFDLKNFNLVSVDIIYSSH--KLLSRNFSISKNFTFRNFIGLPFVY--E-------------C------------ 282 (393)
Q Consensus 232 M~k~iiFD~DGTL~ds~~~~~~~~--~l~~~~~~~~~~~~~~~~~g~~~~~--~-------------~------------ 282 (393)
|++.|+||+||||+||...+..++ .+.+.+.+....+.++...|.+... . .
T Consensus 3 ~~~~iiFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (220)
T COG0546 3 MIKAILFDLDGTLVDSAEDILRAFNAALAELGLPPLDEEEIRQLIGLGLDELIERLLGEADEEAAAELVERLREEFLTAY 82 (220)
T ss_pred CCCEEEEeCCCccccChHHHHHHHHHHHHHcCCCCCCHHHHHHHhcCCHHHHHHHHhccccchhHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999 7777887766666665555544310 0 0
Q ss_pred -----------HHHH----------hhhhccccc------------------cccccccccCCCcHHHHHHHHHHhCCCC
Q 016204 283 -----------VLII----------LGTLASKFE------------------KLGGEVRWMGKPDKIIYKSAMAMVGVDA 323 (393)
Q Consensus 283 -----------~~~~----------~g~~~~~~~------------------~~~~~~~~~gKP~p~~~~~~~~~lgi~~ 323 (393)
+.+. ++++++..+ ..+.+.....||+|..+..+++++|++|
T Consensus 83 ~~~~~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~~~~~~~ 162 (220)
T COG0546 83 AELLESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLADYFDVIVGGDDVPPPKPDPEPLLLLLEKLGLDP 162 (220)
T ss_pred HhhccCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCccccceEEcCCCCCCCCcCHHHHHHHHHHhCCCh
Confidence 0000 222332222 1144667889999999999999999998
Q ss_pred CcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCcccC--CCCccccCChhHHHHHHHh
Q 016204 324 CDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATELG--LDSYGEVADLSSVQTLVSK 379 (393)
Q Consensus 324 ~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~~~--~~~~~~i~~~~~l~~~l~~ 379 (393)
++++||||+ .+|+++|++||+.+|+|.||+...+.+ .+++.+++++.+|...+..
T Consensus 163 ~~~l~VGDs-~~Di~aA~~Ag~~~v~v~~g~~~~~~l~~~~~d~vi~~~~el~~~l~~ 219 (220)
T COG0546 163 EEALMVGDS-LNDILAAKAAGVPAVGVTWGYNSREELAQAGADVVIDSLAELLALLAE 219 (220)
T ss_pred hheEEECCC-HHHHHHHHHcCCCEEEEECCCCCCcchhhcCCCEEECCHHHHHHHHhc
Confidence 899999999 799999999999999999998643333 6799999999999887653
No 16
>PRK06769 hypothetical protein; Validated
Probab=99.78 E-value=2e-18 Score=152.21 Aligned_cols=75 Identities=15% Similarity=0.182 Sum_probs=64.8
Q ss_pred cccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCc------ccC--CCCccccCChhHH
Q 016204 302 RWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHAT------ELG--LDSYGEVADLSSV 373 (393)
Q Consensus 302 ~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~------~~~--~~~~~~i~~~~~l 373 (393)
....||+|++|..++++++++|++|+||||+ .+|+++|+++|+.+|+|.+|.... +.+ ..++++++++.++
T Consensus 89 ~~~~KP~p~~~~~~~~~l~~~p~~~i~IGD~-~~Di~aA~~aGi~~i~v~~g~~~~~~~~~~~~l~~~~~~~~~~~~~el 167 (173)
T PRK06769 89 CECRKPSTGMLLQAAEKHGLDLTQCAVIGDR-WTDIVAAAKVNATTILVRTGAGYDALHTYRDKWAHIEPNYIAENFEDA 167 (173)
T ss_pred CCCCCCCHHHHHHHHHHcCCCHHHeEEEcCC-HHHHHHHHHCCCeEEEEecCCCchhhhhhhcccccCCCcchhhCHHHH
Confidence 4568999999999999999999999999999 699999999999999999987542 222 4678889999998
Q ss_pred HHHH
Q 016204 374 QTLV 377 (393)
Q Consensus 374 ~~~l 377 (393)
.+++
T Consensus 168 ~~~l 171 (173)
T PRK06769 168 VNWI 171 (173)
T ss_pred HHHH
Confidence 8765
No 17
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=99.78 E-value=1.9e-18 Score=162.03 Aligned_cols=144 Identities=14% Similarity=0.122 Sum_probs=105.6
Q ss_pred ccEEEEecCCccccCH-HHHHHHH--HHHhcCCCCChHHHHHHHhCCCchH------------H---HHHH---------
Q 016204 233 TDLILFDLKNFNLVSV-DIIYSSH--KLLSRNFSISKNFTFRNFIGLPFVY------------E---CVLI--------- 285 (393)
Q Consensus 233 ~k~iiFD~DGTL~ds~-~~~~~~~--~l~~~~~~~~~~~~~~~~~g~~~~~------------~---~~~~--------- 285 (393)
+|+|||||||||+||. ..+..+| .+.++|+.....+.++...|.+... + .+..
T Consensus 24 ~k~vIFDlDGTLvDS~~~~~~~a~~~~~~~~G~~~~~~e~~~~~~G~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 103 (260)
T PLN03243 24 WLGVVLEWEGVIVEDDSELERKAWRALAEEEGKRPPPAFLLKRAEGMKNEQAISEVLCWSRDFLQMKRLAIRKEDLYEYM 103 (260)
T ss_pred ceEEEEeCCCceeCCchHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 6899999999999996 5666788 6677887766555555566654310 0 0000
Q ss_pred -------------H----------hhhhccccc------------------cccccccccCCCcHHHHHHHHHHhCCCCC
Q 016204 286 -------------I----------LGTLASKFE------------------KLGGEVRWMGKPDKIIYKSAMAMVGVDAC 324 (393)
Q Consensus 286 -------------~----------~g~~~~~~~------------------~~~~~~~~~gKP~p~~~~~~~~~lgi~~~ 324 (393)
. ++++++... ..+++....+||+|++|..+++++|++|+
T Consensus 104 ~~~~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~ 183 (260)
T PLN03243 104 QGGLYRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEGFFSVVLAAEDVYRGKPDPEMFMYAAERLGFIPE 183 (260)
T ss_pred HccCcccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHhhCcEEEecccCCCCCCCHHHHHHHHHHhCCChH
Confidence 0 112222211 11455667799999999999999999999
Q ss_pred cEEEEecCchhhHHHHHHcCCeEEEEcCCCCCcccCCCCccccCChhHHHHHHH
Q 016204 325 DSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATELGLDSYGEVADLSSVQTLVS 378 (393)
Q Consensus 325 ~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~~~~~~~~~i~~~~~l~~~l~ 378 (393)
+|+||||+ .+|+++|+++|+.+|+|. |......+..++.+++++.++....-
T Consensus 184 ~~l~IgDs-~~Di~aA~~aG~~~i~v~-g~~~~~~l~~ad~vi~~~~el~~~~~ 235 (260)
T PLN03243 184 RCIVFGNS-NSSVEAAHDGCMKCVAVA-GKHPVYELSAGDLVVRRLDDLSVVDL 235 (260)
T ss_pred HeEEEcCC-HHHHHHHHHcCCEEEEEe-cCCchhhhccCCEEeCCHHHHHHHHH
Confidence 99999999 799999999999999997 65555555678899999999887543
No 18
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=99.78 E-value=2.7e-18 Score=157.33 Aligned_cols=146 Identities=24% Similarity=0.214 Sum_probs=101.8
Q ss_pred cccEEEEecCCccccCHHHHHHHH--HHHhcCCCCChHHHHHHHhCCCc-----------------hH---HH-------
Q 016204 232 MTDLILFDLKNFNLVSVDIIYSSH--KLLSRNFSISKNFTFRNFIGLPF-----------------VY---EC------- 282 (393)
Q Consensus 232 M~k~iiFD~DGTL~ds~~~~~~~~--~l~~~~~~~~~~~~~~~~~g~~~-----------------~~---~~------- 282 (393)
|+|++||||||||+||+..+..+| .+.++|+.......+.. .|... .. +.
T Consensus 1 ~~~avIFD~DGvLvDse~~~~~a~~~~~~~~g~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (221)
T COG0637 1 MIKAVIFDMDGTLVDSEPLHARAWLEALKEYGIEISDEEIREL-HGGGIARIIDLLRKLAAGEDPADLAELERLLYEAEA 79 (221)
T ss_pred CCcEEEEcCCCCcCcchHHHHHHHHHHHHHcCCCCCHHHHHHH-HCCChHHHHHHHHHHhcCCcccCHHHHHHHHHHHHH
Confidence 579999999999999999999999 67777766554433222 22110 00 00
Q ss_pred --------------HHHH-------------------------hhhhccccccccccccccCCCcHHHHHHHHHHhCCCC
Q 016204 283 --------------VLII-------------------------LGTLASKFEKLGGEVRWMGKPDKIIYKSAMAMVGVDA 323 (393)
Q Consensus 283 --------------~~~~-------------------------~g~~~~~~~~~~~~~~~~gKP~p~~~~~~~~~lgi~~ 323 (393)
++.. +|+...+....+++.+..+||+|++|..+++++|++|
T Consensus 80 ~~~~~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P 159 (221)
T COG0637 80 LELEGLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLDYFDVIVTADDVARGKPAPDIYLLAAERLGVDP 159 (221)
T ss_pred hhhcCCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChhhcchhccHHHHhcCCCCCHHHHHHHHHcCCCh
Confidence 0000 1111111111255677888999999999999999999
Q ss_pred CcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCc--c--cCCCCccccCChhHHHHHHHh
Q 016204 324 CDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHAT--E--LGLDSYGEVADLSSVQTLVSK 379 (393)
Q Consensus 324 ~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~--~--~~~~~~~~i~~~~~l~~~l~~ 379 (393)
++|++|+|+ .+++++|++|||.+|++..+.... + ....++....++.++...+..
T Consensus 160 ~~CvviEDs-~~Gi~Aa~aAGm~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 218 (221)
T COG0637 160 EECVVVEDS-PAGIQAAKAAGMRVVGVPAGHDRPHLDPLDAHGADTVLLDLAELPALLEA 218 (221)
T ss_pred HHeEEEecc-hhHHHHHHHCCCEEEEecCCCCccccchhhhhhcchhhccHHHHHHHHHh
Confidence 999999999 799999999999999999854421 1 224566667788887766554
No 19
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=99.77 E-value=2.9e-18 Score=160.03 Aligned_cols=76 Identities=21% Similarity=0.125 Sum_probs=65.1
Q ss_pred cccccccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCcccC-CCCccccCChhHHH
Q 016204 298 GGEVRWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATELG-LDSYGEVADLSSVQ 374 (393)
Q Consensus 298 ~~~~~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~~~-~~~~~~i~~~~~l~ 374 (393)
+.+....+||+|++|..+++++|++|++|+||||+ ..|+++|+++|+.+|+|.+|....+.. .+++++++++.++.
T Consensus 156 ~~~~~~~~KP~p~~~~~a~~~~~~~~~~~l~vgDs-~~Di~aA~~aGi~~i~v~~g~~~~~l~~~~a~~vi~~~~e~~ 232 (248)
T PLN02770 156 IGSECEHAKPHPDPYLKALEVLKVSKDHTFVFEDS-VSGIKAGVAAGMPVVGLTTRNPESLLMEAKPTFLIKDYEDPK 232 (248)
T ss_pred ecCcCCCCCCChHHHHHHHHHhCCChhHEEEEcCC-HHHHHHHHHCCCEEEEEeCCCCHHHHhhcCCCEEeccchhhH
Confidence 45666778999999999999999999999999999 699999999999999999986433332 57888999988833
No 20
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.77 E-value=3.3e-18 Score=154.92 Aligned_cols=80 Identities=24% Similarity=0.215 Sum_probs=70.5
Q ss_pred cccccccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCcccC--CCCccccCChhHHHH
Q 016204 298 GGEVRWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATELG--LDSYGEVADLSSVQT 375 (393)
Q Consensus 298 ~~~~~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~~~--~~~~~~i~~~~~l~~ 375 (393)
+.+....+||+|++|..+++++|++|++|+||||+ .+|+++|+++|+.+|+|.||.++.+.+ .+++++++++.+|..
T Consensus 123 ~~~~~~~~KP~~~~~~~~~~~~~~~~~~~l~igD~-~~Di~aA~~~Gi~~i~~~~g~~~~~~l~~~~~~~~~~~~~~l~~ 201 (205)
T TIGR01454 123 GSDEVPRPKPAPDIVREALRLLDVPPEDAVMVGDA-VTDLASARAAGTATVAALWGEGDAGELLAARPDFLLRKPQSLLA 201 (205)
T ss_pred ecCcCCCCCCChHHHHHHHHHcCCChhheEEEcCC-HHHHHHHHHcCCeEEEEEecCCChhhhhhcCCCeeeCCHHHHHH
Confidence 34445678999999999999999999999999999 699999999999999999998876654 468889999999988
Q ss_pred HHH
Q 016204 376 LVS 378 (393)
Q Consensus 376 ~l~ 378 (393)
+++
T Consensus 202 ~~~ 204 (205)
T TIGR01454 202 LCR 204 (205)
T ss_pred Hhh
Confidence 764
No 21
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.77 E-value=4.1e-18 Score=154.90 Aligned_cols=78 Identities=31% Similarity=0.290 Sum_probs=67.6
Q ss_pred cccccccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCcccC--CCCccccCChhHHHH
Q 016204 298 GGEVRWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATELG--LDSYGEVADLSSVQT 375 (393)
Q Consensus 298 ~~~~~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~~~--~~~~~~i~~~~~l~~ 375 (393)
+.+....+||+|++|..+++++|++|++|+||||+ .+|+++|+++|+.+|+|.+|.+..+.+ ..++++++++.++..
T Consensus 133 ~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~~igDs-~~d~~aa~~aG~~~i~v~~g~~~~~~l~~~~a~~~i~~~~~l~~ 211 (213)
T TIGR01449 133 GGDSLAQRKPHPDPLLLAAERLGVAPQQMVYVGDS-RVDIQAARAAGCPSVLLTYGYRYGEAIDLLPPDVLYDSLNELPP 211 (213)
T ss_pred ecCCCCCCCCChHHHHHHHHHcCCChhHeEEeCCC-HHHHHHHHHCCCeEEEEccCCCCCcchhhcCCCeEeCCHHHHHh
Confidence 44556678999999999999999999999999999 799999999999999999998765443 468888999988865
Q ss_pred H
Q 016204 376 L 376 (393)
Q Consensus 376 ~ 376 (393)
+
T Consensus 212 ~ 212 (213)
T TIGR01449 212 L 212 (213)
T ss_pred h
Confidence 4
No 22
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.76 E-value=5.8e-18 Score=159.98 Aligned_cols=148 Identities=26% Similarity=0.260 Sum_probs=109.1
Q ss_pred hcccEEEEecCCccccCHHHHHHHH--HHHhcCCCCChHHHHHHHhCCCc-----------------hHH---H------
Q 016204 231 RMTDLILFDLKNFNLVSVDIIYSSH--KLLSRNFSISKNFTFRNFIGLPF-----------------VYE---C------ 282 (393)
Q Consensus 231 ~M~k~iiFD~DGTL~ds~~~~~~~~--~l~~~~~~~~~~~~~~~~~g~~~-----------------~~~---~------ 282 (393)
+|+|+|||||||||+||.+.+..++ .+.+++......+.+..+.|.+. ..+ .
T Consensus 11 ~~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 90 (272)
T PRK13223 11 RLPRLVMFDLDGTLVDSVPDLAAAVDRMLLELGRPPAGLEAVRHWVGNGAPVLVRRALAGSIDHDGVDDELAEQALALFM 90 (272)
T ss_pred ccCCEEEEcCCCccccCHHHHHHHHHHHHHHcCCCCCCHHHHHHHhChhHHHHHHHHhcccccccCCCHHHHHHHHHHHH
Confidence 7899999999999999999999998 66777776554444444444321 000 0
Q ss_pred ---------------HHHH----------hhhhccccc------------------cccccccccCCCcHHHHHHHHHHh
Q 016204 283 ---------------VLII----------LGTLASKFE------------------KLGGEVRWMGKPDKIIYKSAMAMV 319 (393)
Q Consensus 283 ---------------~~~~----------~g~~~~~~~------------------~~~~~~~~~gKP~p~~~~~~~~~l 319 (393)
+.+. ++++++... ..+.+....+||+|++|+.+++++
T Consensus 91 ~~~~~~~~~~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~~f~~i~~~d~~~~~Kp~p~~~~~~~~~~ 170 (272)
T PRK13223 91 EAYADSHELTVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGRYFRWIIGGDTLPQKKPDPAALLFVMKMA 170 (272)
T ss_pred HHHHhcCcCCccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHhhCeEEEecCCCCCCCCCcHHHHHHHHHh
Confidence 0000 111221111 013344566899999999999999
Q ss_pred CCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCcccC--CCCccccCChhHHHHHHHh
Q 016204 320 GVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATELG--LDSYGEVADLSSVQTLVSK 379 (393)
Q Consensus 320 gi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~~~--~~~~~~i~~~~~l~~~l~~ 379 (393)
|+++++|++|||+ .+|+++|+++|+.+++|.+|....+.+ ..++.+++++.+|..++..
T Consensus 171 g~~~~~~l~IGD~-~~Di~aA~~aGi~~i~v~~G~~~~~~l~~~~~~~vi~~l~el~~~~~~ 231 (272)
T PRK13223 171 GVPPSQSLFVGDS-RSDVLAAKAAGVQCVALSYGYNHGRPIAEESPALVIDDLRALLPGCAD 231 (272)
T ss_pred CCChhHEEEECCC-HHHHHHHHHCCCeEEEEecCCCCchhhhhcCCCEEECCHHHHHHHHhc
Confidence 9999999999999 799999999999999999998765543 4788999999999887654
No 23
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.76 E-value=5.3e-18 Score=155.15 Aligned_cols=79 Identities=20% Similarity=0.260 Sum_probs=67.3
Q ss_pred cccccccCCCcHHHHHHHHHHhCCC-CCcEEEEecCchhhHHHHHHcCCeE-EEEcCCCCCcccC--CCCccccCChhHH
Q 016204 298 GGEVRWMGKPDKIIYKSAMAMVGVD-ACDSIAVGDSLHHDIKGANAAGIQS-VFIIGGIHATELG--LDSYGEVADLSSV 373 (393)
Q Consensus 298 ~~~~~~~gKP~p~~~~~~~~~lgi~-~~~~v~VGDsl~~Di~~a~~aG~~~-i~v~~G~~~~~~~--~~~~~~i~~~~~l 373 (393)
+.+....+||+|++|..+++++|+. |++|+||||+ .+|+++|+++|+.+ |++.+|....+.+ ..++.+++++.++
T Consensus 137 ~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~~~igD~-~~Di~aa~~aG~~~~i~~~~g~~~~~~~~~~~~~~~i~~~~~l 215 (220)
T TIGR03351 137 CPSDVAAGRPAPDLILRAMELTGVQDVQSVAVAGDT-PNDLEAGINAGAGAVVGVLTGAHDAEELSRHPHTHVLDSVADL 215 (220)
T ss_pred cCCcCCCCCCCHHHHHHHHHHcCCCChhHeEEeCCC-HHHHHHHHHCCCCeEEEEecCCCcHHHHhhcCCceeecCHHHH
Confidence 4455567899999999999999997 7999999999 69999999999999 9999987766544 4677788998888
Q ss_pred HHHH
Q 016204 374 QTLV 377 (393)
Q Consensus 374 ~~~l 377 (393)
..++
T Consensus 216 ~~~~ 219 (220)
T TIGR03351 216 PALL 219 (220)
T ss_pred HHhh
Confidence 7654
No 24
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=99.76 E-value=1.2e-17 Score=147.63 Aligned_cols=73 Identities=22% Similarity=0.192 Sum_probs=63.1
Q ss_pred ccccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeE-EEEcCCCCCcccC-CCCccccCChhHHH
Q 016204 301 VRWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQS-VFIIGGIHATELG-LDSYGEVADLSSVQ 374 (393)
Q Consensus 301 ~~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~-i~v~~G~~~~~~~-~~~~~~i~~~~~l~ 374 (393)
....+||+|++|..+++++|+++++|+||||+ .+|+++|+++|+.+ ++|.+|....... ..++.+++++.+|.
T Consensus 101 ~~~~~KP~p~~~~~a~~~~~~~~~~~v~VGDs-~~Di~aA~~aG~~~~i~v~~g~~~~~~~~~~ad~~i~~~~el~ 175 (176)
T TIGR00213 101 VCDCRKPKPGMLLQARKELHIDMAQSYMVGDK-LEDMQAGVAAKVKTNVLVRTGKPITPEAENIADWVLNSLADLP 175 (176)
T ss_pred CCCCCCCCHHHHHHHHHHcCcChhhEEEEcCC-HHHHHHHHHCCCcEEEEEecCCcccccccccCCEEeccHHHhh
Confidence 34568999999999999999999999999999 79999999999998 8999997654443 45788888888764
No 25
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=99.75 E-value=7e-18 Score=157.82 Aligned_cols=79 Identities=19% Similarity=0.201 Sum_probs=65.8
Q ss_pred cccccccCCCcHHHHHHHHHHhCCC-CCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCC--------------------
Q 016204 298 GGEVRWMGKPDKIIYKSAMAMVGVD-ACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHA-------------------- 356 (393)
Q Consensus 298 ~~~~~~~gKP~p~~~~~~~~~lgi~-~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~-------------------- 356 (393)
+.+....+||+|++|..+++++|+. |++|+||||+ .+|+++|+++|+.+|+|.+|.+.
T Consensus 148 ~~~~~~~~KP~p~~~~~a~~~l~~~~~~~~l~IGDs-~~Di~aA~~aGi~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~ 226 (253)
T TIGR01422 148 TTDDVPAGRPAPWMALKNAIELGVYDVAACVKVGDT-VPDIEEGRNAGMWTVGLILSSNELGLSEEEYRALDPAELEARR 226 (253)
T ss_pred ccccCCCCCCCHHHHHHHHHHcCCCCchheEEECCc-HHHHHHHHHCCCeEEEEecCCcccCCCHHHHHhCCHHHHHHHH
Confidence 4455667899999999999999995 9999999999 69999999999999999999863
Q ss_pred ---cccC--CCCccccCChhHHHHHH
Q 016204 357 ---TELG--LDSYGEVADLSSVQTLV 377 (393)
Q Consensus 357 ---~~~~--~~~~~~i~~~~~l~~~l 377 (393)
.+.+ .+++.+++++.++.+++
T Consensus 227 ~~~~~~l~~~~~~~v~~~~~el~~~~ 252 (253)
T TIGR01422 227 AEATARLKAAGAHYVIDTLAELPAVI 252 (253)
T ss_pred HHHHHHHHhcCCCEehhcHHHHHHhh
Confidence 1222 56778888888876654
No 26
>PRK11587 putative phosphatase; Provisional
Probab=99.75 E-value=9.1e-18 Score=153.59 Aligned_cols=74 Identities=16% Similarity=0.162 Sum_probs=63.1
Q ss_pred ccccccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCcccCCCCccccCChhHHH
Q 016204 299 GEVRWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATELGLDSYGEVADLSSVQ 374 (393)
Q Consensus 299 ~~~~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~~~~~~~~~i~~~~~l~ 374 (393)
.+.....||+|++|..+++++|++|++|+||||+ .+|+++|+++|+.+|+|.++.... ....++.+++++.+|.
T Consensus 131 ~~~~~~~KP~p~~~~~~~~~~g~~p~~~l~igDs-~~di~aA~~aG~~~i~v~~~~~~~-~~~~~~~~~~~~~el~ 204 (218)
T PRK11587 131 AERVKRGKPEPDAYLLGAQLLGLAPQECVVVEDA-PAGVLSGLAAGCHVIAVNAPADTP-RLDEVDLVLHSLEQLT 204 (218)
T ss_pred HHHhcCCCCCcHHHHHHHHHcCCCcccEEEEecc-hhhhHHHHHCCCEEEEECCCCchh-hhccCCEEecchhhee
Confidence 3445678999999999999999999999999999 799999999999999998875432 3356788888888864
No 27
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=99.75 E-value=6.4e-17 Score=143.69 Aligned_cols=78 Identities=26% Similarity=0.266 Sum_probs=67.3
Q ss_pred cccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCcccC-CCC--ccccCChhHHHHHHH
Q 016204 302 RWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATELG-LDS--YGEVADLSSVQTLVS 378 (393)
Q Consensus 302 ~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~~~-~~~--~~~i~~~~~l~~~l~ 378 (393)
...+||+|.+|..+++++|+++++|+||||+ .+|+++|+++|+.+|++.+|....... ..+ +.+++++.++.+++.
T Consensus 99 ~~~~KP~p~~~~~~~~~l~~~~~~~~~VgDs-~~Di~~A~~aG~~~i~v~~g~~~~~~~~~~~~~~~ii~~l~el~~~l~ 177 (181)
T PRK08942 99 CDCRKPKPGMLLSIAERLNIDLAGSPMVGDS-LRDLQAAAAAGVTPVLVRTGKGVTTLAEGAAPGTWVLDSLADLPQALK 177 (181)
T ss_pred CcCCCCCHHHHHHHHHHcCCChhhEEEEeCC-HHHHHHHHHCCCeEEEEcCCCCchhhhcccCCCceeecCHHHHHHHHH
Confidence 4568999999999999999999999999999 699999999999999999987644333 345 789999999988776
Q ss_pred hc
Q 016204 379 KY 380 (393)
Q Consensus 379 ~~ 380 (393)
..
T Consensus 178 ~~ 179 (181)
T PRK08942 178 KQ 179 (181)
T ss_pred hh
Confidence 43
No 28
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=99.74 E-value=1.9e-17 Score=161.22 Aligned_cols=144 Identities=15% Similarity=0.119 Sum_probs=104.6
Q ss_pred Hhc---ccEEEEecCCccccCHHH-HHHHH--HHHhcCCCCChHHHHHHHhCCCchH---------------HHH-----
Q 016204 230 SRM---TDLILFDLKNFNLVSVDI-IYSSH--KLLSRNFSISKNFTFRNFIGLPFVY---------------ECV----- 283 (393)
Q Consensus 230 ~~M---~k~iiFD~DGTL~ds~~~-~~~~~--~l~~~~~~~~~~~~~~~~~g~~~~~---------------~~~----- 283 (393)
.+| .++|||||||||+||... +..+| .+..+|......+.++...|.+... +.+
T Consensus 125 ~~~~~~~~~VIFDlDGTLIDS~~~i~~~a~~~l~~e~G~~~~~~e~~~~~~G~~~~~~l~~ll~~~~~~~~~e~l~~~~~ 204 (381)
T PLN02575 125 ERMGCGWLGAIFEWEGVIIEDNPDLENQAWLTLAQEEGKSPPPAFILRRVEGMKNEQAISEVLCWSRDPAELRRMATRKE 204 (381)
T ss_pred HhccCCCCEEEEcCcCcceeCHHHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence 467 799999999999999985 55677 4457777666665666666654311 000
Q ss_pred --------------------HHH-------hhhhccccc------------------cccccccccCCCcHHHHHHHHHH
Q 016204 284 --------------------LII-------LGTLASKFE------------------KLGGEVRWMGKPDKIIYKSAMAM 318 (393)
Q Consensus 284 --------------------~~~-------~g~~~~~~~------------------~~~~~~~~~gKP~p~~~~~~~~~ 318 (393)
+.. ++++++... ..+.+....+||+|++|..++++
T Consensus 205 ~~y~~~~~~~~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~yFd~Iv~sddv~~~KP~Peifl~A~~~ 284 (381)
T PLN02575 205 EIYQALQGGIYRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRGFFSVIVAAEDVYRGKPDPEMFIYAAQL 284 (381)
T ss_pred HHHHHHhccCCCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHHHceEEEecCcCCCCCCCHHHHHHHHHH
Confidence 000 122222211 11556667799999999999999
Q ss_pred hCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCcccCCCCccccCChhHHHH
Q 016204 319 VGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATELGLDSYGEVADLSSVQT 375 (393)
Q Consensus 319 lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~~~~~~~~~i~~~~~l~~ 375 (393)
+|++|++|+||||+ .+|+++|+++|+.+|+|.++... ..+..++++++++.+|.-
T Consensus 285 lgl~Peecl~IGDS-~~DIeAAk~AGm~~IgV~~~~~~-~~l~~Ad~iI~s~~EL~~ 339 (381)
T PLN02575 285 LNFIPERCIVFGNS-NQTVEAAHDARMKCVAVASKHPI-YELGAADLVVRRLDELSI 339 (381)
T ss_pred cCCCcccEEEEcCC-HHHHHHHHHcCCEEEEECCCCCh-hHhcCCCEEECCHHHHHH
Confidence 99999999999999 79999999999999999986533 334568889999999844
No 29
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=99.74 E-value=1.4e-17 Score=153.03 Aligned_cols=235 Identities=24% Similarity=0.325 Sum_probs=151.0
Q ss_pred CcEEEEeccccccCCCcCCccHHHHHHHHHHC----CCeEEEEcCCCCCch-HHHHHHH-hCCCCCcccceEEeCchhHH
Q 016204 30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATT----GAKMVVISNSSRRAS-TTIDKLK-SLGFDPSLFAGAITSGELTH 103 (393)
Q Consensus 30 ~k~i~~DlDGtL~~g~~~ipga~eal~~L~~~----G~~v~~~TN~~~~~~-~~~~~l~-~lG~~~~~~~~iits~~~~~ 103 (393)
-=+|+|||||||.+|++++||+.+|++.|.++ .++++|+||.+...+ .-++.|. .||+.++. ++|+.|.....
T Consensus 35 ~fgfafDIDGVL~RG~~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~rA~~lS~~Lgv~Vs~-dqviqSHsP~r 113 (389)
T KOG1618|consen 35 TFGFAFDIDGVLFRGHRPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSRAQELSALLGVEVSA-DQVIQSHSPFR 113 (389)
T ss_pred ceeEEEecccEEEecCCCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhHHHHHHHhhCCccCH-HHHHhhcChHH
Confidence 35899999999999999999999999999999 899999999875543 3344443 48999998 99999988877
Q ss_pred HHHHcccchhhhhcCCeEEEEccCCccccccccCCceeeCCccC--------------------------------cCEE
Q 016204 104 QYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEE--------------------------------ADFI 151 (393)
Q Consensus 104 ~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--------------------------------~~~v 151 (393)
.+...+. ..+++++.+ .-.-..+++||+.+.+.++ .++|
T Consensus 114 ~l~~~~~--------k~vLv~G~~-~vr~vAegyGFk~Vvt~D~l~k~f~~ldP~t~~~~~~k~~~~~R~~~~~r~ieAv 184 (389)
T KOG1618|consen 114 LLVEYHY--------KRVLVVGQG-SVREVAEGYGFKNVVTVDELAKYFPLLDPFTDLSRELKTTKLARDRELFRRIEAV 184 (389)
T ss_pred HHhhhhh--------ceEEEecCC-cHHHHhhccCccceeeHHHHHHhCCCcccccchhHhhhcccchhccccccceeEE
Confidence 7663332 233333311 1112678889887643211 1111
Q ss_pred EecCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCC--------------CCEEeecCceeeeeCCceeecCCCcccccccc
Q 016204 152 LAHGTEGMGLPSGDVRPMSLQDLEKILEICASKK--------------IPMVVANPDYVTVEARALRVMPGKDILVNEIF 217 (393)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~n~d~~~~~~~~~~~~~g~~~~~~~~~ 217 (393)
+.- .+..++.. +++-+++.....| ++++++|.|.+|+.+-..+. -|.|++..
T Consensus 185 ~~~-------~dPv~W~~---dlQli~D~l~snG~~gt~~~a~~~~Phipiy~sN~DLlW~~e~~lpR-~G~GaF~l--- 250 (389)
T KOG1618|consen 185 LLL-------GDPVRWET---DLQLIMDVLLSNGSPGTGRLATGPYPHIPIYASNMDLLWMAEYKLPR-FGHGAFRL--- 250 (389)
T ss_pred EEe-------cCchhhhh---hHHHHHHHHhcCCCCCcccccCCCCCCCceEEecccccccccCCCcc-ccchHHHH---
Confidence 110 01112222 3444444443333 46888888888876643211 12222110
Q ss_pred cccchhhhhhhHHhcccEEEEecCCccccCHHHHHHHHHHHhcCCCCChHHHHHHHhCCCchHHHHHHHhhhhccccccc
Q 016204 218 RPHNVAQEKYIISRMTDLILFDLKNFNLVSVDIIYSSHKLLSRNFSISKNFTFRNFIGLPFVYECVLIILGTLASKFEKL 297 (393)
Q Consensus 218 ~~~~~~~~~~~~~~M~k~iiFD~DGTL~ds~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~ 297 (393)
.-+..|.+..|.++
T Consensus 251 -----------------------------------------------~lesiy~kltGk~L------------------- 264 (389)
T KOG1618|consen 251 -----------------------------------------------CLESIYQKLTGKPL------------------- 264 (389)
T ss_pred -----------------------------------------------HHHHHHHHhcCCcc-------------------
Confidence 01122222222221
Q ss_pred cccccccCCCcHHHHHHHHHHh--------CC-CCCcEEEEecCchhhHHHHH---------------HcCCeEEEEcCC
Q 016204 298 GGEVRWMGKPDKIIYKSAMAMV--------GV-DACDSIAVGDSLHHDIKGAN---------------AAGIQSVFIIGG 353 (393)
Q Consensus 298 ~~~~~~~gKP~p~~~~~~~~~l--------gi-~~~~~v~VGDsl~~Di~~a~---------------~aG~~~i~v~~G 353 (393)
.....|||.+-.|.++...+ +. ++....||||++.+|+..|+ +-||.+|+|.||
T Consensus 265 --~~~t~GKPt~ltY~~A~~vl~~~ak~~~~~~~~k~lymvGDNP~sDv~GA~lf~~yap~~~~g~~~~~~w~SILV~TG 342 (389)
T KOG1618|consen 265 --RYTTLGKPTKLTYDYAEDVLRRQAKRRGGAAPIKKLYMVGDNPMSDVRGANLFHQYAPELGAGGSANYGWISILVRTG 342 (389)
T ss_pred --cccccCCCceehHHhHHHHHHHHHHhhcccCCcceeeeecCCCcccccccccccccccccccccccCCCceEEEEeee
Confidence 12367999999888865443 22 56789999999999999997 889999999999
Q ss_pred CCC
Q 016204 354 IHA 356 (393)
Q Consensus 354 ~~~ 356 (393)
.+.
T Consensus 343 V~~ 345 (389)
T KOG1618|consen 343 VYN 345 (389)
T ss_pred eec
Confidence 886
No 30
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=99.74 E-value=2.5e-17 Score=151.05 Aligned_cols=143 Identities=18% Similarity=0.188 Sum_probs=100.9
Q ss_pred cccEEEEecCCccccCHHHHHHHH--HHHhcCCCCChHHHHHHHhCCCc----------------hHHH-----------
Q 016204 232 MTDLILFDLKNFNLVSVDIIYSSH--KLLSRNFSISKNFTFRNFIGLPF----------------VYEC----------- 282 (393)
Q Consensus 232 M~k~iiFD~DGTL~ds~~~~~~~~--~l~~~~~~~~~~~~~~~~~g~~~----------------~~~~----------- 282 (393)
|+|+|+|||||||+||...+..++ .+..++......+.+...+|.+. ..+.
T Consensus 6 ~~k~iiFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (222)
T PRK10826 6 QILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRREELPDTLGLRIDQVVDLWYARQPWNGPSRQEVVQRIIARVIS 85 (222)
T ss_pred cCcEEEEcCCCCCCcCHHHHHHHHHHHHHHCCCCCCHHHHHHHhhCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 589999999999999999999988 66666665444333333333211 0000
Q ss_pred -----------HHHH----------hhhhccccc------------------cccccccccCCCcHHHHHHHHHHhCCCC
Q 016204 283 -----------VLII----------LGTLASKFE------------------KLGGEVRWMGKPDKIIYKSAMAMVGVDA 323 (393)
Q Consensus 283 -----------~~~~----------~g~~~~~~~------------------~~~~~~~~~gKP~p~~~~~~~~~lgi~~ 323 (393)
+.+. ++++++... ..+++....+||+|++|+.+++++|++|
T Consensus 86 ~~~~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~ 165 (222)
T PRK10826 86 LIEETRPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRDYFDALASAEKLPYSKPHPEVYLNCAAKLGVDP 165 (222)
T ss_pred HHhcCCCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchhcccEEEEcccCCCCCCCHHHHHHHHHHcCCCH
Confidence 0000 111211111 1144556679999999999999999999
Q ss_pred CcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCccc-CCCCccccCChhHHHH
Q 016204 324 CDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATEL-GLDSYGEVADLSSVQT 375 (393)
Q Consensus 324 ~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~~-~~~~~~~i~~~~~l~~ 375 (393)
++|++|||+ .+|+++|+++|+++|++.++....+. ...++.++.++.++..
T Consensus 166 ~~~~~igDs-~~Di~aA~~aG~~~i~v~~~~~~~~~~~~~~~~~~~~~~dl~~ 217 (222)
T PRK10826 166 LTCVALEDS-FNGMIAAKAARMRSIVVPAPEQQNDPRWALADVKLESLTELTA 217 (222)
T ss_pred HHeEEEcCC-hhhHHHHHHcCCEEEEecCCccCchhhhhhhheeccCHHHHhh
Confidence 999999999 69999999999999999988655432 2467888899988754
No 31
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.73 E-value=4.3e-17 Score=153.73 Aligned_cols=81 Identities=14% Similarity=0.108 Sum_probs=68.9
Q ss_pred cccccccCCCcHHHHHHHHHHhCCC-CCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCC--------------------
Q 016204 298 GGEVRWMGKPDKIIYKSAMAMVGVD-ACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHA-------------------- 356 (393)
Q Consensus 298 ~~~~~~~gKP~p~~~~~~~~~lgi~-~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~-------------------- 356 (393)
+.+....+||+|++|..+++++|+. +++|+||||+ .+|+++|+++|+.+|+|.+|.+.
T Consensus 150 ~~~~~~~~KP~p~~~~~a~~~l~~~~~~e~l~IGDs-~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~ 228 (267)
T PRK13478 150 TTDDVPAGRPYPWMALKNAIELGVYDVAACVKVDDT-VPGIEEGLNAGMWTVGVILSGNELGLSEEEYQALSAAELAARR 228 (267)
T ss_pred cCCcCCCCCCChHHHHHHHHHcCCCCCcceEEEcCc-HHHHHHHHHCCCEEEEEccCcccccCCHHHHHhcCHHHHHHHH
Confidence 4455667899999999999999996 6999999999 69999999999999999999863
Q ss_pred ---cccC--CCCccccCChhHHHHHHHh
Q 016204 357 ---TELG--LDSYGEVADLSSVQTLVSK 379 (393)
Q Consensus 357 ---~~~~--~~~~~~i~~~~~l~~~l~~ 379 (393)
.+.+ .+++++++|+.+|.+++..
T Consensus 229 ~~~~~~l~~~~a~~vi~~~~~l~~~l~~ 256 (267)
T PRK13478 229 ERARARLRAAGAHYVIDTIADLPAVIAD 256 (267)
T ss_pred HHHHHHHHHcCCCeehhhHHHHHHHHHH
Confidence 1222 6789999999999887753
No 32
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.72 E-value=4e-17 Score=149.49 Aligned_cols=148 Identities=18% Similarity=0.182 Sum_probs=103.0
Q ss_pred ccEEEEecCCccccCHHHHHHHH--HHHhcCCCCChHHHHHHHhCC---------------CchHHHH------------
Q 016204 233 TDLILFDLKNFNLVSVDIIYSSH--KLLSRNFSISKNFTFRNFIGL---------------PFVYECV------------ 283 (393)
Q Consensus 233 ~k~iiFD~DGTL~ds~~~~~~~~--~l~~~~~~~~~~~~~~~~~g~---------------~~~~~~~------------ 283 (393)
+|+|+||+||||+||...+..++ .+.++|......+.+....|. +...+.+
T Consensus 4 ~~~viFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (221)
T PRK10563 4 IEAVFFDCDGTLVDSEVICSRAYVTMFAEFGITLSLEEVFKRFKGVKLYEIIDIISKEHGVTLAKAELEPVYRAEVARLF 83 (221)
T ss_pred CCEEEECCCCCCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 68999999999999999988888 666777654443333333332 2211110
Q ss_pred -------------HHH----hhhhccccc-------------------cccccccccCCCcHHHHHHHHHHhCCCCCcEE
Q 016204 284 -------------LII----LGTLASKFE-------------------KLGGEVRWMGKPDKIIYKSAMAMVGVDACDSI 327 (393)
Q Consensus 284 -------------~~~----~g~~~~~~~-------------------~~~~~~~~~gKP~p~~~~~~~~~lgi~~~~~v 327 (393)
+.. ++++++... ..+++.....||+|++|..+++++|++|++|+
T Consensus 84 ~~~~~~~~gv~~~L~~L~~~~~ivTn~~~~~~~~~l~~~~l~~~F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~~p~~~l 163 (221)
T PRK10563 84 DSELEPIAGANALLESITVPMCVVSNGPVSKMQHSLGKTGMLHYFPDKLFSGYDIQRWKPDPALMFHAAEAMNVNVENCI 163 (221)
T ss_pred HccCCcCCCHHHHHHHcCCCEEEEeCCcHHHHHHHHHhcChHHhCcceEeeHHhcCCCCCChHHHHHHHHHcCCCHHHeE
Confidence 000 111222111 01233456789999999999999999999999
Q ss_pred EEecCchhhHHHHHHcCCeEEEEcCCCCCcccCCCCccccCChhHHHHHHHhcC
Q 016204 328 AVGDSLHHDIKGANAAGIQSVFIIGGIHATELGLDSYGEVADLSSVQTLVSKYD 381 (393)
Q Consensus 328 ~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~~~~~~~~~i~~~~~l~~~l~~~~ 381 (393)
||||+ .+|+++|+++|+.+|++.++.+..+....++.+++++.+|.+++...+
T Consensus 164 ~igDs-~~di~aA~~aG~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 216 (221)
T PRK10563 164 LVDDS-SAGAQSGIAAGMEVFYFCADPHNKPIDHPLVTTFTDLAQLPELWKARG 216 (221)
T ss_pred EEeCc-HhhHHHHHHCCCEEEEECCCCCCcchhhhhhHHHHHHHHHHHHHHHhc
Confidence 99999 799999999999999998765543333345567889999888777554
No 33
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.72 E-value=6.7e-17 Score=152.51 Aligned_cols=148 Identities=16% Similarity=0.125 Sum_probs=103.7
Q ss_pred hcccEEEEecCCccccCHHHHHHHH--HHHhcCCCCChHHHHHHHhCCCch------------HHHHH------------
Q 016204 231 RMTDLILFDLKNFNLVSVDIIYSSH--KLLSRNFSISKNFTFRNFIGLPFV------------YECVL------------ 284 (393)
Q Consensus 231 ~M~k~iiFD~DGTL~ds~~~~~~~~--~l~~~~~~~~~~~~~~~~~g~~~~------------~~~~~------------ 284 (393)
.++|++||||||||+||++.+..++ .+..++....+.+.+....|.+.. .+.+.
T Consensus 60 ~~~k~vIFDlDGTLiDS~~~~~~a~~~~~~~~G~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (273)
T PRK13225 60 QTLQAIIFDFDGTLVDSLPTVVAIANAHAPDFGYDPIDERDYAQLRQWSSRTIVRRAGLSPWQQARLLQRVQRQLGDCLP 139 (273)
T ss_pred hhcCEEEECCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhCccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcc
Confidence 4579999999999999999999998 666777765555445544443210 01000
Q ss_pred ------------HH-------hhhhcccccc--------cccc----cc---ccCCCcHHHHHHHHHHhCCCCCcEEEEe
Q 016204 285 ------------II-------LGTLASKFEK--------LGGE----VR---WMGKPDKIIYKSAMAMVGVDACDSIAVG 330 (393)
Q Consensus 285 ------------~~-------~g~~~~~~~~--------~~~~----~~---~~gKP~p~~~~~~~~~lgi~~~~~v~VG 330 (393)
+. ++++++.... .+.. .+ ...+++++.|..++++++++|++|+|||
T Consensus 140 ~~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~~F~~vi~~~~~~~k~~~~~~~l~~~~~~p~~~l~IG 219 (273)
T PRK13225 140 ALQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRSLFSVVQAGTPILSKRRALSQLVAREGWQPAAVMYVG 219 (273)
T ss_pred cCCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhheEEEEecCCCCCCHHHHHHHHHHhCcChhHEEEEC
Confidence 00 1222222111 0100 00 1123567899999999999999999999
Q ss_pred cCchhhHHHHHHcCCeEEEEcCCCCCcccC--CCCccccCChhHHHHHHHh
Q 016204 331 DSLHHDIKGANAAGIQSVFIIGGIHATELG--LDSYGEVADLSSVQTLVSK 379 (393)
Q Consensus 331 Dsl~~Di~~a~~aG~~~i~v~~G~~~~~~~--~~~~~~i~~~~~l~~~l~~ 379 (393)
|+ .+|+++|+++|+.+|+|.+|....+.+ ..++++++++.+|.+++..
T Consensus 220 Ds-~~Di~aA~~AG~~~I~v~~g~~~~~~l~~~~ad~~i~~~~eL~~~~~~ 269 (273)
T PRK13225 220 DE-TRDVEAARQVGLIAVAVTWGFNDRQSLVAACPDWLLETPSDLLQAVTQ 269 (273)
T ss_pred CC-HHHHHHHHHCCCeEEEEecCCCCHHHHHHCCCCEEECCHHHHHHHHHH
Confidence 99 799999999999999999998776533 5789999999999887754
No 34
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=99.72 E-value=1.4e-16 Score=150.26 Aligned_cols=59 Identities=22% Similarity=0.358 Sum_probs=50.0
Q ss_pred cCCcEEEEeccccccCCCcC-CccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCC
Q 016204 28 RRFKAWLLDQFGVLHDGKKP-YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (393)
Q Consensus 28 ~~~k~i~~DlDGtL~~g~~~-ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~ 88 (393)
|++|+|++|+||||++.++. .|.++++|++|+++|++++++| +|+.....+.+.++|++
T Consensus 1 M~~kli~~DlDGTLl~~~~~i~~~~~~ai~~~~~~G~~~~iaT--GR~~~~~~~~~~~l~~~ 60 (272)
T PRK10530 1 MTYRVIALDLDGTLLTPKKTILPESLEALARAREAGYKVIIVT--GRHHVAIHPFYQALALD 60 (272)
T ss_pred CCccEEEEeCCCceECCCCccCHHHHHHHHHHHHCCCEEEEEc--CCChHHHHHHHHhcCCC
Confidence 46899999999999997664 5889999999999999999999 77666666667777774
No 35
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.71 E-value=1.5e-16 Score=145.81 Aligned_cols=81 Identities=28% Similarity=0.295 Sum_probs=69.8
Q ss_pred cccccccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCcccC--CCCccccCChhHHHH
Q 016204 298 GGEVRWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATELG--LDSYGEVADLSSVQT 375 (393)
Q Consensus 298 ~~~~~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~~~--~~~~~~i~~~~~l~~ 375 (393)
+.+.....||+|++|+.+++++++++++|++|||+ .+|+++|+++|+.+|+|.+|....+.+ ..++++++++.+|..
T Consensus 141 ~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~igD~-~~Di~~a~~~g~~~i~v~~g~~~~~~~~~~~~~~~i~~~~~l~~ 219 (226)
T PRK13222 141 GGDSLPNKKPDPAPLLLACEKLGLDPEEMLFVGDS-RNDIQAARAAGCPSVGVTYGYNYGEPIALSEPDVVIDHFAELLP 219 (226)
T ss_pred cCCCCCCCCcChHHHHHHHHHcCCChhheEEECCC-HHHHHHHHHCCCcEEEECcCCCCccchhhcCCCEEECCHHHHHH
Confidence 33445678999999999999999999999999999 799999999999999999997654433 468889999999988
Q ss_pred HHHh
Q 016204 376 LVSK 379 (393)
Q Consensus 376 ~l~~ 379 (393)
++..
T Consensus 220 ~l~~ 223 (226)
T PRK13222 220 LLGL 223 (226)
T ss_pred HHHH
Confidence 7754
No 36
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=99.71 E-value=8.8e-17 Score=151.72 Aligned_cols=251 Identities=14% Similarity=0.089 Sum_probs=138.3
Q ss_pred cCCcEEEEeccccccCCCcCC-ccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCcccceEEeCchhHHHHH
Q 016204 28 RRFKAWLLDQFGVLHDGKKPY-PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYL 106 (393)
Q Consensus 28 ~~~k~i~~DlDGtL~~g~~~i-pga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~~~~~iits~~~~~~~l 106 (393)
|++|+|++|+||||++.++.+ |.+.++|++|+++|++++++| +|+.....+.+.++|++... ..+++.+
T Consensus 1 m~~kli~~DlDGTLl~~~~~i~~~~~~ai~~l~~~G~~~~iaT--GR~~~~~~~~~~~l~~~~~~-~~~I~~N------- 70 (270)
T PRK10513 1 MAIKLIAIDMDGTLLLPDHTISPAVKQAIAAARAKGVNVVLTT--GRPYAGVHRYLKELHMEQPG-DYCITNN------- 70 (270)
T ss_pred CceEEEEEecCCcCcCCCCccCHHHHHHHHHHHHCCCEEEEec--CCChHHHHHHHHHhCCCCCC-CeEEEcC-------
Confidence 468999999999999977655 789999999999999999999 77766666777778875432 3445443
Q ss_pred HcccchhhhhcCCeEEEEccCCccccccccCCceeeCCccCcCEEEecCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCC
Q 016204 107 LRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKI 186 (393)
Q Consensus 107 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (393)
|+.++.. .+...+.. ..++.+.+.++.+.+.+.+.
T Consensus 71 -----------Ga~i~~~---------------------~~~~~i~~-------------~~l~~~~~~~i~~~~~~~~~ 105 (270)
T PRK10513 71 -----------GALVQKA---------------------ADGETVAQ-------------TALSYDDYLYLEKLSREVGV 105 (270)
T ss_pred -----------CeEEEEC---------------------CCCCEEEe-------------cCCCHHHHHHHHHHHHHcCC
Confidence 2211110 00112333 67888888888888888888
Q ss_pred CEEeecCceeeeeCCceeecCCCcccccccccccchhhhhhhH-HhcccEEEEecCCccccCHHHHHHHHHHHhcCCCCC
Q 016204 187 PMVVANPDYVTVEARALRVMPGKDILVNEIFRPHNVAQEKYII-SRMTDLILFDLKNFNLVSVDIIYSSHKLLSRNFSIS 265 (393)
Q Consensus 187 ~~~~~n~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~M~k~iiFD~DGTL~ds~~~~~~~~~l~~~~~~~~ 265 (393)
.+...+.+.++................. .+............ ....|.++++ +........
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~k~~~~~-------~~~~~~~~~---------- 167 (270)
T PRK10513 106 HFHALDRNTLYTANRDISYYTVHESFLT-GIPLVFREVEKMDPNLQFPKVMMID-------EPEILDAAI---------- 167 (270)
T ss_pred cEEEEECCEEEEecCCcchhHHHhhhhc-cCCccccchhhccccCCceEEEEeC-------CHHHHHHHH----------
Confidence 7777777766643211000000000000 00000000000000 0112222221 000000000
Q ss_pred hHHHHHHHhCCCchHHHHHHHhhhhccccccccccccccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCC
Q 016204 266 KNFTFRNFIGLPFVYECVLIILGTLASKFEKLGGEVRWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGI 345 (393)
Q Consensus 266 ~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~ 345 (393)
+.+...++.. ..+..+. ....+....+-.+...++.+++++|++++++++|||+ .||++|.+.+|.
T Consensus 168 --~~~~~~~~~~---------~~~~~s~--~~~~eI~~~gvsKg~al~~l~~~~gi~~~~v~afGD~-~NDi~Ml~~ag~ 233 (270)
T PRK10513 168 --ARIPAEVKER---------YTVLKSA--PYFLEILDKRVNKGTGVKSLAEHLGIKPEEVMAIGDQ-ENDIAMIEYAGV 233 (270)
T ss_pred --HHhHHHhcCc---------EEEEEec--CeeEEEeCCCCChHHHHHHHHHHhCCCHHHEEEECCc-hhhHHHHHhCCc
Confidence 0000000000 0011111 1123444555566889999999999999999999999 799999999998
Q ss_pred eEEEEcCCCCCcccCCCCccccC
Q 016204 346 QSVFIIGGIHATELGLDSYGEVA 368 (393)
Q Consensus 346 ~~i~v~~G~~~~~~~~~~~~~i~ 368 (393)
.. .+. ...++....|+++..
T Consensus 234 ~v-Am~--NA~~~vK~~A~~vt~ 253 (270)
T PRK10513 234 GV-AMG--NAIPSVKEVAQFVTK 253 (270)
T ss_pred eE-Eec--CccHHHHHhcCeecc
Confidence 43 333 334444445555554
No 37
>PLN02940 riboflavin kinase
Probab=99.70 E-value=1.4e-16 Score=157.27 Aligned_cols=77 Identities=22% Similarity=0.292 Sum_probs=67.7
Q ss_pred cccccccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCcccCCCCccccCChhHHHH
Q 016204 298 GGEVRWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATELGLDSYGEVADLSSVQT 375 (393)
Q Consensus 298 ~~~~~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~~~~~~~~~i~~~~~l~~ 375 (393)
+.+.+..+||+|++|..+++++|++|++|+||||+ .+|+++|+++|+.+|+|.+|.........++.+++++.++..
T Consensus 142 ~~d~v~~~KP~p~~~~~a~~~lgv~p~~~l~VGDs-~~Di~aA~~aGi~~I~v~~g~~~~~~~~~ad~~i~sl~el~~ 218 (382)
T PLN02940 142 GGDEVEKGKPSPDIFLEAAKRLNVEPSNCLVIEDS-LPGVMAGKAAGMEVIAVPSIPKQTHLYSSADEVINSLLDLQP 218 (382)
T ss_pred ehhhcCCCCCCHHHHHHHHHHcCCChhHEEEEeCC-HHHHHHHHHcCCEEEEECCCCcchhhccCccEEeCCHhHcCH
Confidence 45566789999999999999999999999999999 699999999999999999987655455678889999988764
No 38
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.68 E-value=2.4e-16 Score=144.18 Aligned_cols=76 Identities=29% Similarity=0.405 Sum_probs=61.5
Q ss_pred cccccccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCccc---CCCCccccCChhHH
Q 016204 298 GGEVRWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATEL---GLDSYGEVADLSSV 373 (393)
Q Consensus 298 ~~~~~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~~---~~~~~~~i~~~~~l 373 (393)
+++.....||+|++|..+++++|++|++|+||||++.+|+++|+++|+.+|++.+|...... ...++++++++.++
T Consensus 142 ~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~igDs~~~di~~A~~aG~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~el 220 (221)
T TIGR02253 142 TSEEEGVEKPHPKIFYAALKRLGVKPEEAVMVGDRLDKDIKGAKNLGMKTVWINQGKSSKMEDDVYPYPDYEISSLREL 220 (221)
T ss_pred EeccCCCCCCCHHHHHHHHHHcCCChhhEEEECCChHHHHHHHHHCCCEEEEECCCCCcccccccccCCCeeeCcHHhh
Confidence 44556778999999999999999999999999999438999999999999999988764421 13456666666554
No 39
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=99.68 E-value=6e-16 Score=132.77 Aligned_cols=50 Identities=34% Similarity=0.560 Sum_probs=46.8
Q ss_pred ccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCC
Q 016204 303 WMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGG 353 (393)
Q Consensus 303 ~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G 353 (393)
...||+|++|+.+++++++++++|+||||+ ..|+++|+++|+++|++..|
T Consensus 98 ~~~KP~~~~~~~~~~~~~~~~~e~i~IGDs-~~Di~~A~~~Gi~~v~i~~~ 147 (147)
T TIGR01656 98 SCRKPKPGLILEALKRLGVDASRSLVVGDR-LRDLQAARNAGLAAVLLVDG 147 (147)
T ss_pred CCCCCCHHHHHHHHHHcCCChHHEEEEcCC-HHHHHHHHHCCCCEEEecCC
Confidence 346999999999999999999999999999 89999999999999999764
No 40
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.66 E-value=1.2e-15 Score=139.67 Aligned_cols=79 Identities=25% Similarity=0.384 Sum_probs=66.4
Q ss_pred cccccccCCCcHHHHHHHHHHh-CCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCcccCCCCccccCChhHHHHH
Q 016204 298 GGEVRWMGKPDKIIYKSAMAMV-GVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATELGLDSYGEVADLSSVQTL 376 (393)
Q Consensus 298 ~~~~~~~gKP~p~~~~~~~~~l-gi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~~~~~~~~~i~~~~~l~~~ 376 (393)
+++.....||+|.+|+.+++++ |++|++|++|||++.+|+++|+++|+.+|++.+|.........++++++++.+|.++
T Consensus 144 ~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~v~igD~~~~di~~A~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~el~~~ 223 (224)
T TIGR02254 144 VSEDAGIQKPDKEIFNYALERMPKFSKEEVLMIGDSLTADIKGGQNAGLDTCWMNPDMHPNPDDIIPTYEIRSLEELYEI 223 (224)
T ss_pred EcCccCCCCCCHHHHHHHHHHhcCCCchheEEECCCcHHHHHHHHHCCCcEEEECCCCCCCCCCCCCceEECCHHHHHhh
Confidence 4455677899999999999999 999999999999933799999999999999998755433335677889999988765
No 41
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.66 E-value=9.2e-16 Score=155.55 Aligned_cols=73 Identities=16% Similarity=0.126 Sum_probs=63.7
Q ss_pred CCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCcccCCCCccccCChhHHHHHHHhc
Q 016204 305 GKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATELGLDSYGEVADLSSVQTLVSKY 380 (393)
Q Consensus 305 gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~~~~~~~~~i~~~~~l~~~l~~~ 380 (393)
.||+|++|..++++++ |++|++|||+ .+|+++|+++|+.+|++.+|....+.+..++++++++.++.+++...
T Consensus 384 ~~~kP~~~~~al~~l~--~~~~v~VGDs-~~Di~aAk~AG~~~I~v~~~~~~~~~~~~~d~~i~~l~el~~~l~~~ 456 (459)
T PRK06698 384 SLNKSDLVKSILNKYD--IKEAAVVGDR-LSDINAAKDNGLIAIGCNFDFAQEDELAQADIVIDDLLELKGILSTV 456 (459)
T ss_pred CCCCcHHHHHHHHhcC--cceEEEEeCC-HHHHHHHHHCCCeEEEEeCCCCcccccCCCCEEeCCHHHHHHHHHHH
Confidence 4788899999999875 6899999999 69999999999999999998876655667899999999999887643
No 42
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=99.65 E-value=9.6e-16 Score=145.85 Aligned_cols=76 Identities=28% Similarity=0.281 Sum_probs=66.9
Q ss_pred ccccccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCcccCCCCccccCChhHHHH
Q 016204 299 GEVRWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATELGLDSYGEVADLSSVQT 375 (393)
Q Consensus 299 ~~~~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~~~~~~~~~i~~~~~l~~ 375 (393)
.++...+||+|++|..+++++|++|++|+||||+ .+|+++|+++|+.+|+|.+|.+..+.+..++.+++++.++..
T Consensus 195 ~~~~~~~KP~p~~~~~a~~~~~~~p~~~l~IGDs-~~Di~aA~~aG~~~i~v~~g~~~~~~l~~ad~vi~~~~~l~~ 270 (286)
T PLN02779 195 GDDVPKKKPDPDIYNLAAETLGVDPSRCVVVEDS-VIGLQAAKAAGMRCIVTKSSYTADEDFSGADAVFDCLGDVPL 270 (286)
T ss_pred ccccCCCCCCHHHHHHHHHHhCcChHHEEEEeCC-HHhHHHHHHcCCEEEEEccCCccccccCCCcEEECChhhcch
Confidence 3445678999999999999999999999999999 699999999999999999998877666678888888877653
No 43
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=99.65 E-value=7.3e-16 Score=137.39 Aligned_cols=53 Identities=21% Similarity=0.318 Sum_probs=49.1
Q ss_pred cccccccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEc
Q 016204 298 GGEVRWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFII 351 (393)
Q Consensus 298 ~~~~~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~ 351 (393)
+.+.....||+|++|+.+++++|++|++|+||||+ .+|+++|+++|+++|+|.
T Consensus 134 ~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l~igDs-~~di~aA~~aG~~~i~~~ 186 (188)
T PRK10725 134 AADDVQHHKPAPDTFLRCAQLMGVQPTQCVVFEDA-DFGIQAARAAGMDAVDVR 186 (188)
T ss_pred ehhhccCCCCChHHHHHHHHHcCCCHHHeEEEecc-HhhHHHHHHCCCEEEeec
Confidence 44566789999999999999999999999999999 799999999999999985
No 44
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=99.65 E-value=1.9e-15 Score=127.03 Aligned_cols=47 Identities=26% Similarity=0.459 Sum_probs=44.2
Q ss_pred cCCCcHHHHHHHHHHh-CCCCCcEEEEec-CchhhHHHHHHcCCeEEEEc
Q 016204 304 MGKPDKIIYKSAMAMV-GVDACDSIAVGD-SLHHDIKGANAAGIQSVFII 351 (393)
Q Consensus 304 ~gKP~p~~~~~~~~~l-gi~~~~~v~VGD-sl~~Di~~a~~aG~~~i~v~ 351 (393)
..||+|++|+.+++++ +++|++++|||| + .+|+++|+++|+.+|++.
T Consensus 83 ~~KP~~~~~~~~~~~~~~~~~~~~v~IGD~~-~~Di~~A~~~Gi~~i~~~ 131 (132)
T TIGR01662 83 CRKPKPGMFLEALKRFNEIDPEESVYVGDQD-LTDLQAAKRAGLAFILVA 131 (132)
T ss_pred CCCCChHHHHHHHHHcCCCChhheEEEcCCC-cccHHHHHHCCCeEEEee
Confidence 4799999999999999 599999999999 7 799999999999999985
No 45
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=99.62 E-value=9.5e-15 Score=138.12 Aligned_cols=109 Identities=19% Similarity=0.148 Sum_probs=77.7
Q ss_pred CcEEEEeccccccCCCcCC-ccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCcccceEEeCchhHHHHHHc
Q 016204 30 FKAWLLDQFGVLHDGKKPY-PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLR 108 (393)
Q Consensus 30 ~k~i~~DlDGtL~~g~~~i-pga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~~~~~iits~~~~~~~l~~ 108 (393)
+|++++|+||||++.++.+ +.++++|++|+++|++++++| +|+.....+.+.++|++. .+++++
T Consensus 2 ~kli~~DlDGTLl~~~~~i~~~~~~ai~~l~~~G~~~~iaT--GR~~~~~~~~~~~l~~~~----~~I~~N--------- 66 (272)
T PRK15126 2 ARLAAFDMDGTLLMPDHHLGEKTLSTLARLRERDITLTFAT--GRHVLEMQHILGALSLDA----YLITGN--------- 66 (272)
T ss_pred ccEEEEeCCCcCcCCCCcCCHHHHHHHHHHHHCCCEEEEEC--CCCHHHHHHHHHHcCCCC----cEEecC---------
Confidence 7899999999999976655 789999999999999999999 777766667777788742 234332
Q ss_pred ccchhhhhcCCeEEEEccCCccccccccCCceeeCCccCcCEEEecCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCE
Q 016204 109 RDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKIPM 188 (393)
Q Consensus 109 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (393)
|+.++. .+...+.. ..++.+.+.++++.+.+.+..+
T Consensus 67 ---------Ga~I~~----------------------~~~~~l~~-------------~~i~~~~~~~i~~~~~~~~~~~ 102 (272)
T PRK15126 67 ---------GTRVHS----------------------LEGELLHR-------------QDLPADVAELVLHQQWDTRASM 102 (272)
T ss_pred ---------CcEEEc----------------------CCCCEEEe-------------ecCCHHHHHHHHHHhhhcCcEE
Confidence 221110 00012333 6788889999888887777777
Q ss_pred EeecCceee
Q 016204 189 VVANPDYVT 197 (393)
Q Consensus 189 ~~~n~d~~~ 197 (393)
.....+..+
T Consensus 103 ~~~~~~~~~ 111 (272)
T PRK15126 103 HVFNDDGWF 111 (272)
T ss_pred EEEcCCeEE
Confidence 666666555
No 46
>PRK09449 dUMP phosphatase; Provisional
Probab=99.62 E-value=4.6e-15 Score=136.07 Aligned_cols=81 Identities=28% Similarity=0.403 Sum_probs=64.7
Q ss_pred cccccccCCCcHHHHHHHHHHhCCC-CCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCcccCCCCccccCChhHHHHH
Q 016204 298 GGEVRWMGKPDKIIYKSAMAMVGVD-ACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATELGLDSYGEVADLSSVQTL 376 (393)
Q Consensus 298 ~~~~~~~gKP~p~~~~~~~~~lgi~-~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~~~~~~~~~i~~~~~l~~~ 376 (393)
+++.....||+|++|+.+++++|+. +++|+||||++.+|+++|+++|+.+|++.++.........++++++++.+|..+
T Consensus 142 ~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~~vgD~~~~Di~~A~~aG~~~i~~~~~~~~~~~~~~~~~~i~~~~el~~~ 221 (224)
T PRK09449 142 ISEQVGVAKPDVAIFDYALEQMGNPDRSRVLMVGDNLHSDILGGINAGIDTCWLNAHGREQPEGIAPTYQVSSLSELEQL 221 (224)
T ss_pred EECccCCCCCCHHHHHHHHHHcCCCCcccEEEEcCCcHHHHHHHHHCCCcEEEECCCCCCCCCCCCCeEEECCHHHHHHH
Confidence 4456667899999999999999985 589999999943699999999999999985432221223578889999999887
Q ss_pred HH
Q 016204 377 VS 378 (393)
Q Consensus 377 l~ 378 (393)
+.
T Consensus 222 l~ 223 (224)
T PRK09449 222 LC 223 (224)
T ss_pred Hh
Confidence 64
No 47
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.61 E-value=4.8e-15 Score=137.48 Aligned_cols=79 Identities=25% Similarity=0.280 Sum_probs=64.3
Q ss_pred cccccccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCc----ccCCCCccccCChhHH
Q 016204 298 GGEVRWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHAT----ELGLDSYGEVADLSSV 373 (393)
Q Consensus 298 ~~~~~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~----~~~~~~~~~i~~~~~l 373 (393)
+.+.....||+|++|+.+++++|++|++|+||||++.+|+.+|+++|+.+|++..+.... .....++.++.++.+|
T Consensus 155 ~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~A~~aG~~~i~v~~~~~~~~~~~~~~~~p~~~i~~l~el 234 (238)
T PRK10748 155 RAGPHGRSKPFSDMYHLAAEKLNVPIGEILHVGDDLTTDVAGAIRCGMQACWINPENGDLMQTWDSRLLPHIEISRLASL 234 (238)
T ss_pred ecccCCcCCCcHHHHHHHHHHcCCChhHEEEEcCCcHHHHHHHHHCCCeEEEEcCCCccccccccccCCCCEEECCHHHH
Confidence 445566789999999999999999999999999995599999999999999998754321 1113577788888887
Q ss_pred HHH
Q 016204 374 QTL 376 (393)
Q Consensus 374 ~~~ 376 (393)
.++
T Consensus 235 ~~~ 237 (238)
T PRK10748 235 TSL 237 (238)
T ss_pred Hhh
Confidence 765
No 48
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=99.60 E-value=3.9e-15 Score=112.67 Aligned_cols=72 Identities=35% Similarity=0.623 Sum_probs=64.6
Q ss_pred cCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCcccCCCCccccCChhHHHHHHHhcCCC
Q 016204 304 MGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATELGLDSYGEVADLSSVQTLVSKYDAY 383 (393)
Q Consensus 304 ~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~~~~~~~~~i~~~~~l~~~l~~~~~~ 383 (393)
++||+|.+|+.+++++++++++++||||++.+||++|+++|+.+|+|.+|.++.+. +......
T Consensus 2 ~gKP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~tG~~~~~~-----------------~~~~~~~ 64 (75)
T PF13242_consen 2 CGKPSPGMLEQALKRLGVDPSRCVMVGDSLETDIEAAKAAGIDTILVLTGVYSPED-----------------LEKAEHK 64 (75)
T ss_dssp CSTTSHHHHHHHHHHHTSGGGGEEEEESSTTTHHHHHHHTTSEEEEESSSSSCCCG-----------------HHHSSST
T ss_pred CCCCcHHHHHHHHHHcCCCHHHEEEEcCCcHhHHHHHHHcCCcEEEECCCCCCHHH-----------------HhccCCC
Confidence 69999999999999999999999999999779999999999999999999988875 2345678
Q ss_pred CcEEecCcc
Q 016204 384 PSYVLPSFS 392 (393)
Q Consensus 384 p~~~~~~l~ 392 (393)
|||++++|.
T Consensus 65 pd~vv~~l~ 73 (75)
T PF13242_consen 65 PDYVVDDLK 73 (75)
T ss_dssp TSEEESSGG
T ss_pred CCEEECCHH
Confidence 888888764
No 49
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=99.60 E-value=9e-15 Score=127.90 Aligned_cols=46 Identities=24% Similarity=0.311 Sum_probs=41.8
Q ss_pred cCCCcHHHHHHHHHHhC--CCCCcEEEEecCc-------hhhHHHHHHcCCeEEE
Q 016204 304 MGKPDKIIYKSAMAMVG--VDACDSIAVGDSL-------HHDIKGANAAGIQSVF 349 (393)
Q Consensus 304 ~gKP~p~~~~~~~~~lg--i~~~~~v~VGDsl-------~~Di~~a~~aG~~~i~ 349 (393)
..||+|.+++.+++++| +++++++||||+. .+|+++|+++|+.+++
T Consensus 106 ~~KP~p~~~~~~~~~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi~~~~ 160 (166)
T TIGR01664 106 YRKPMTGMWEYLQSQYNSPIKMTRSFYVGDAAGRKLDFSDADIKFAKNLGLEFKY 160 (166)
T ss_pred CCCCccHHHHHHHHHcCCCCCchhcEEEECCCCCCCCCchhHHHHHHHCCCCcCC
Confidence 47999999999999999 9999999999992 2699999999999875
No 50
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=99.60 E-value=1.4e-14 Score=125.96 Aligned_cols=54 Identities=19% Similarity=0.151 Sum_probs=49.7
Q ss_pred ccccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCC
Q 016204 301 VRWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIH 355 (393)
Q Consensus 301 ~~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~ 355 (393)
.....||+|.+|+.+++++++++++|+||||+ .+|+++|+++|+.++++.++.-
T Consensus 98 ~~~~~KP~~~~~~~~~~~~~~~~~e~l~IGD~-~~Di~~A~~aGi~~i~~~~~~~ 151 (161)
T TIGR01261 98 NCDCRKPKIKLLEPYLKKNLIDKARSYVIGDR-ETDMQLAENLGIRGIQYDEEEL 151 (161)
T ss_pred CCCCCCCCHHHHHHHHHHcCCCHHHeEEEeCC-HHHHHHHHHCCCeEEEEChhhc
Confidence 34567999999999999999999999999999 7999999999999999998754
No 51
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.60 E-value=2.2e-14 Score=131.64 Aligned_cols=82 Identities=30% Similarity=0.410 Sum_probs=69.6
Q ss_pred cccccccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCc-ccCCCCccccCChhHHHHH
Q 016204 298 GGEVRWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHAT-ELGLDSYGEVADLSSVQTL 376 (393)
Q Consensus 298 ~~~~~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~-~~~~~~~~~i~~~~~l~~~ 376 (393)
.++.....||+|.+|+.+++++|++|++++||||++.|||.+|+++||++||+..+.... +....++..+.++.++..+
T Consensus 146 ~s~~~g~~KP~~~~f~~~~~~~g~~p~~~l~VgD~~~~di~gA~~~G~~~vwi~~~~~~~~~~~~~~~~~i~~l~~l~~~ 225 (229)
T COG1011 146 ISEDVGVAKPDPEIFEYALEKLGVPPEEALFVGDSLENDILGARALGMKTVWINRGGKPLPDALEAPDYEISSLAELLDL 225 (229)
T ss_pred EecccccCCCCcHHHHHHHHHcCCCcceEEEECCChhhhhHHHHhcCcEEEEECCCCCCCCCCccCCceEEcCHHHHHHH
Confidence 455667899999999999999999999999999999999999999999999999775532 1114677789999999887
Q ss_pred HHh
Q 016204 377 VSK 379 (393)
Q Consensus 377 l~~ 379 (393)
+..
T Consensus 226 ~~~ 228 (229)
T COG1011 226 LER 228 (229)
T ss_pred Hhh
Confidence 754
No 52
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.60 E-value=7.5e-15 Score=134.89 Aligned_cols=61 Identities=15% Similarity=0.139 Sum_probs=52.9
Q ss_pred cccccccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeE-EEEcCCCCCccc
Q 016204 298 GGEVRWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQS-VFIIGGIHATEL 359 (393)
Q Consensus 298 ~~~~~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~-i~v~~G~~~~~~ 359 (393)
+++....+||+|++|+.+++++|++|++|+||||+ .+|+++|+++|+.+ ++|.++.+....
T Consensus 141 ~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l~igDs-~~di~aA~~aG~~~~~~v~~~~~~~~~ 202 (224)
T PRK14988 141 STHTFGYPKEDQRLWQAVAEHTGLKAERTLFIDDS-EPILDAAAQFGIRYCLGVTNPDSGIAE 202 (224)
T ss_pred EeeeCCCCCCCHHHHHHHHHHcCCChHHEEEEcCC-HHHHHHHHHcCCeEEEEEeCCCCCccc
Confidence 44566789999999999999999999999999999 69999999999985 678887665443
No 53
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=99.59 E-value=2e-14 Score=126.40 Aligned_cols=56 Identities=23% Similarity=0.370 Sum_probs=51.7
Q ss_pred CCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCcccC
Q 016204 305 GKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATELG 360 (393)
Q Consensus 305 gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~~~ 360 (393)
.||+|++|..+++++++++++|+||||++.+|+++|+++|+.+|+|.+|.++.+.+
T Consensus 90 ~KP~p~~~~~~l~~~~~~~~~~l~IGDs~~~Di~aA~~aGi~~i~v~~g~~~~~~~ 145 (170)
T TIGR01668 90 VKPPGCAFRRAHPEMGLTSEQVAVVGDRLFTDVMGGNRNGSYTILVEPLVHPDQWF 145 (170)
T ss_pred CCCChHHHHHHHHHcCCCHHHEEEECCcchHHHHHHHHcCCeEEEEccCcCCcccc
Confidence 69999999999999999999999999994379999999999999999998877654
No 54
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.58 E-value=9.9e-15 Score=129.56 Aligned_cols=53 Identities=28% Similarity=0.365 Sum_probs=48.2
Q ss_pred cccccccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEc
Q 016204 298 GGEVRWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFII 351 (393)
Q Consensus 298 ~~~~~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~ 351 (393)
+.+.....||+|++|+.++++++++|++|+||||+ .+|+++|+++|+++|+|.
T Consensus 133 ~~~~~~~~kp~p~~~~~~~~~~~~~~~~~v~vgD~-~~di~aA~~aG~~~i~v~ 185 (185)
T TIGR01990 133 DPAEIKKGKPDPEIFLAAAEGLGVSPSECIGIEDA-QAGIEAIKAAGMFAVGVG 185 (185)
T ss_pred ehhhcCCCCCChHHHHHHHHHcCCCHHHeEEEecC-HHHHHHHHHcCCEEEecC
Confidence 34455678999999999999999999999999999 799999999999999873
No 55
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=99.57 E-value=5.5e-14 Score=132.29 Aligned_cols=225 Identities=21% Similarity=0.250 Sum_probs=128.0
Q ss_pred cCCcEEEEeccccccCCCcCC-ccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCcccceEEeCchhHHHHH
Q 016204 28 RRFKAWLLDQFGVLHDGKKPY-PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYL 106 (393)
Q Consensus 28 ~~~k~i~~DlDGtL~~g~~~i-pga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~~~~~iits~~~~~~~l 106 (393)
|++|++++|+||||++.+..+ +.++++|++++++|++++++| +|+.....+.+..+|++. .+++.+
T Consensus 1 ~~~kli~~DlDGTLl~~~~~i~~~~~~al~~~~~~g~~v~iaT--GR~~~~~~~~~~~l~~~~----~~I~~N------- 67 (264)
T COG0561 1 MMIKLLAFDLDGTLLDSNKTISPETKEALARLREKGVKVVLAT--GRPLPDVLSILEELGLDG----PLITFN------- 67 (264)
T ss_pred CCeeEEEEcCCCCccCCCCccCHHHHHHHHHHHHCCCEEEEEC--CCChHHHHHHHHHcCCCc----cEEEeC-------
Confidence 478999999999999988766 679999999999999999999 777777778888888853 234332
Q ss_pred HcccchhhhhcCCeEEEEccCCccccccccCCceeeCCccCcCEEEecCCCCCCCCCCCCCCCCHHHHHHHHHHHHhC-C
Q 016204 107 LRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASK-K 185 (393)
Q Consensus 107 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 185 (393)
|+.++.. -..+.. ..++.+.+.++.+...+. .
T Consensus 68 -----------Ga~i~~~-----------------------~~~i~~-------------~~l~~~~~~~i~~~~~~~~~ 100 (264)
T COG0561 68 -----------GALIYNG-----------------------GELLFQ-------------KPLSREDVEELLELLEDFQG 100 (264)
T ss_pred -----------CeEEecC-----------------------CcEEee-------------ecCCHHHHHHHHHHHHhccC
Confidence 3332211 012333 678888999998887665 4
Q ss_pred CCEEeecCceeeeeCCceeecCCCcccccccccccchhhhhhhHHhc--ccEEEEecCCccccCHHHHHHHHHHHhcCCC
Q 016204 186 IPMVVANPDYVTVEARALRVMPGKDILVNEIFRPHNVAQEKYIISRM--TDLILFDLKNFNLVSVDIIYSSHKLLSRNFS 263 (393)
Q Consensus 186 ~~~~~~n~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~M--~k~iiFD~DGTL~ds~~~~~~~~~l~~~~~~ 263 (393)
..+.....+..+...... ..... .+.+............. .+.+.++.+-...+....
T Consensus 101 ~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 160 (264)
T COG0561 101 IALVLYTDDGIYLTKKRG-TFAEA------RIGFANLSPVGREAAELEDNKIIALDKDHEILEELVE------------- 160 (264)
T ss_pred ceEEEEeccceeeccCCC-ccccc------ccccccccccccchhhcCcceEEEEecChHhHHHHHH-------------
Confidence 545544444333221110 00000 00000000000000000 222333322222220000
Q ss_pred CChHHHHHHHhCCCchHHHHHHHhhhhccccccccccccccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHc
Q 016204 264 ISKNFTFRNFIGLPFVYECVLIILGTLASKFEKLGGEVRWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAA 343 (393)
Q Consensus 264 ~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~a 343 (393)
.+...+... .-..++... ...+....+-.+...++.+++++|++++++++|||+ .||++|.+.+
T Consensus 161 -----~l~~~~~~~---------~~~~~~s~~-~~lei~~~g~~K~~al~~l~~~lgi~~~~v~afGD~-~ND~~Ml~~a 224 (264)
T COG0561 161 -----ALRKRFPDL---------GLTVSSSGP-ISLDITPKGVSKGYALQRLAKLLGIKLEEVIAFGDS-TNDIEMLEVA 224 (264)
T ss_pred -----HHhhhcccc---------ceEEEEcCC-ceEEEecCCCchHHHHHHHHHHhCCCHHHeEEeCCc-cccHHHHHhc
Confidence 000000000 000111111 113445556666889999999999999999999999 7999999998
Q ss_pred CCeEE
Q 016204 344 GIQSV 348 (393)
Q Consensus 344 G~~~i 348 (393)
|...+
T Consensus 225 g~gva 229 (264)
T COG0561 225 GLGVA 229 (264)
T ss_pred Ceeee
Confidence 87653
No 56
>PLN02887 hydrolase family protein
Probab=99.57 E-value=3.2e-14 Score=146.18 Aligned_cols=268 Identities=15% Similarity=0.114 Sum_probs=141.6
Q ss_pred hhhhccHHHHhhhcCCcEEEEeccccccCCCcCC-ccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCcccc
Q 016204 15 FQTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPY-PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFA 93 (393)
Q Consensus 15 ~~~~~~~~~~~~~~~~k~i~~DlDGtL~~g~~~i-pga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~~~~ 93 (393)
.+...+++..-. ++|+|++|+||||++.++.+ +.+++||++|+++|++|+++| +|....+.+.+..+|+... .
T Consensus 295 ~~~~~~~~~~~~--~iKLIa~DLDGTLLn~d~~Is~~t~eAI~kl~ekGi~~vIAT--GR~~~~i~~~l~~L~l~~~--~ 368 (580)
T PLN02887 295 RKKEGSLRFYKP--KFSYIFCDMDGTLLNSKSQISETNAKALKEALSRGVKVVIAT--GKARPAVIDILKMVDLAGK--D 368 (580)
T ss_pred hhhhcchhhhcc--CccEEEEeCCCCCCCCCCccCHHHHHHHHHHHHCCCeEEEEc--CCCHHHHHHHHHHhCcccc--c
Confidence 334445555444 79999999999999987655 789999999999999999999 7776666666777776422 2
Q ss_pred eEEeCchhHHHHHHcccchhhhhcCCeEEEEccCCccccccccCCceeeCCccCcCEEEecCCCCCCCCCCCCCCCCHHH
Q 016204 94 GAITSGELTHQYLLRRDDAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQD 173 (393)
Q Consensus 94 ~iits~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 173 (393)
.+++.+. +....+ |+-++- .+-..+.. ..++.+.
T Consensus 369 ~~I~~~~----p~I~~N-------GA~I~d----------------------~~g~~I~~-------------~~L~~e~ 402 (580)
T PLN02887 369 GIISESS----PGVFLQ-------GLLVYG----------------------RQGREIYR-------------SNLDQEV 402 (580)
T ss_pred ceEeecc----cEEeec-------CeEEEE----------------------CCCcEEEE-------------EeCCHHH
Confidence 2332110 000000 111110 00113333 6788899
Q ss_pred HHHHHHHHHhCCCCEEeecCceeeeeCCceeecCCCcccccc-cccccchhhhhhhHHhcccEEEEecCCccccCHHHHH
Q 016204 174 LEKILEICASKKIPMVVANPDYVTVEARALRVMPGKDILVNE-IFRPHNVAQEKYIISRMTDLILFDLKNFNLVSVDIIY 252 (393)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~M~k~iiFD~DGTL~ds~~~~~ 252 (393)
+.++++++.+.++.+.+...+..+...... ........... .+.....-.+........|.++++- .....
T Consensus 403 v~eIi~~~~~~~i~~~~~~~d~~y~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~~~~i~Ki~~~~~-------~e~~~ 474 (580)
T PLN02887 403 CREACLYSLEHKIPLIAFSQDRCLTLFDHP-LVDSLHTIYHEPKAEIMSSVDQLLAAADIQKVIFLDT-------AEGVS 474 (580)
T ss_pred HHHHHHHHHHcCCeEEEEECCeEEEecCch-HHHHHHHhhccccccccCCHHHhhcccCeeEEEEEcC-------hHHHH
Confidence 999998888888877777666655322110 00000000000 0000000000000001122222210 00000
Q ss_pred HHHHHHhcCCCCChHHHHHHHhCCCchHHHHHHHhhhhccccccccccccccCCCcHHHHHHHHHHhCCCCCcEEEEecC
Q 016204 253 SSHKLLSRNFSISKNFTFRNFIGLPFVYECVLIILGTLASKFEKLGGEVRWMGKPDKIIYKSAMAMVGVDACDSIAVGDS 332 (393)
Q Consensus 253 ~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDs 332 (393)
... .+.+.+.++.. +.+..+.. ...+....+-.+...++.+++++|++++++++|||+
T Consensus 475 ~~l-----------~~~l~~~~~~~---------~~v~~S~~--~~lEI~p~gvSKG~ALk~L~e~lGI~~eeviAFGDs 532 (580)
T PLN02887 475 SVL-----------RPYWSEATGDR---------ANVVQAQP--DMLEIVPPGTSKGNGVKMLLNHLGVSPDEIMAIGDG 532 (580)
T ss_pred HHH-----------HHHHHHHhcCc---------EEEEEecC--cEEEEecCCCCHHHHHHHHHHHcCCCHHHEEEEecc
Confidence 000 00000000000 00111111 123444455555889999999999999999999999
Q ss_pred chhhHHHHHHcCCeEEEEcCCCCCcccCCCCccccC
Q 016204 333 LHHDIKGANAAGIQSVFIIGGIHATELGLDSYGEVA 368 (393)
Q Consensus 333 l~~Di~~a~~aG~~~i~v~~G~~~~~~~~~~~~~i~ 368 (393)
.||++|.+.+|.. |.+. ...++....|+++..
T Consensus 533 -~NDIeMLe~AG~g-VAMg--NA~eeVK~~Ad~VT~ 564 (580)
T PLN02887 533 -ENDIEMLQLASLG-VALS--NGAEKTKAVADVIGV 564 (580)
T ss_pred -hhhHHHHHHCCCE-EEeC--CCCHHHHHhCCEEeC
Confidence 7999999999984 3333 344444444555543
No 57
>PRK10976 putative hydrolase; Provisional
Probab=99.57 E-value=2.7e-14 Score=134.45 Aligned_cols=57 Identities=21% Similarity=0.248 Sum_probs=48.8
Q ss_pred CcEEEEeccccccCCCcCC-ccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCC
Q 016204 30 FKAWLLDQFGVLHDGKKPY-PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (393)
Q Consensus 30 ~k~i~~DlDGtL~~g~~~i-pga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~ 88 (393)
+|+|++|+||||++.++.+ |.+.++|++|+++|++++++| +|+.....+.+..+|++
T Consensus 2 ikli~~DlDGTLl~~~~~is~~~~~ai~~l~~~G~~~~iaT--GR~~~~~~~~~~~l~~~ 59 (266)
T PRK10976 2 YQVVASDLDGTLLSPDHTLSPYAKETLKLLTARGIHFVFAT--GRHHVDVGQIRDNLEIK 59 (266)
T ss_pred ceEEEEeCCCCCcCCCCcCCHHHHHHHHHHHHCCCEEEEEc--CCChHHHHHHHHhcCCC
Confidence 7899999999999986655 789999999999999999999 77666666667777774
No 58
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.56 E-value=1.9e-14 Score=127.75 Aligned_cols=51 Identities=24% Similarity=0.373 Sum_probs=46.8
Q ss_pred ccccccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEE
Q 016204 299 GEVRWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFI 350 (393)
Q Consensus 299 ~~~~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v 350 (393)
.+.....||+|++|..++++++++|+++++|||+ .+|+++|+++|+.+|+|
T Consensus 135 ~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~IgD~-~~di~aA~~~G~~~i~v 185 (185)
T TIGR02009 135 ADEVKEGKPHPETFLLAAELLGVSPNECVVFEDA-LAGVQAARAAGMFAVAV 185 (185)
T ss_pred hhhCCCCCCChHHHHHHHHHcCCCHHHeEEEeCc-HhhHHHHHHCCCeEeeC
Confidence 3445678999999999999999999999999999 79999999999999976
No 59
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.55 E-value=4.4e-14 Score=155.30 Aligned_cols=86 Identities=15% Similarity=0.223 Sum_probs=69.1
Q ss_pred cccccccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCcccC-CCCccccCChhHH--H
Q 016204 298 GGEVRWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATELG-LDSYGEVADLSSV--Q 374 (393)
Q Consensus 298 ~~~~~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~~~-~~~~~~i~~~~~l--~ 374 (393)
+.+....+||+|++|+.+++++|++|++|+||||+ ..|+++|+++||.+|+|.++....+.. .+++.+++++.++ .
T Consensus 210 ~~~~~~~~KP~Pe~~~~a~~~lgv~p~e~v~IgDs-~~Di~AA~~aGm~~I~v~~~~~~~~L~~~~a~~vi~~l~el~~~ 288 (1057)
T PLN02919 210 SADAFENLKPAPDIFLAAAKILGVPTSECVVIEDA-LAGVQAARAAGMRCIAVTTTLSEEILKDAGPSLIRKDIGNISLS 288 (1057)
T ss_pred ECcccccCCCCHHHHHHHHHHcCcCcccEEEEcCC-HHHHHHHHHcCCEEEEECCCCCHHHHhhCCCCEEECChHHCCHH
Confidence 34456678999999999999999999999999999 699999999999999999986543333 6778899999885 3
Q ss_pred HHHHhcCCCC
Q 016204 375 TLVSKYDAYP 384 (393)
Q Consensus 375 ~~l~~~~~~p 384 (393)
.++...+..|
T Consensus 289 ~~~~~~~~~~ 298 (1057)
T PLN02919 289 DILTGGSDAT 298 (1057)
T ss_pred HHHhcCCCCC
Confidence 3444433333
No 60
>PLN02811 hydrolase
Probab=99.53 E-value=6.4e-14 Score=128.33 Aligned_cols=74 Identities=18% Similarity=0.186 Sum_probs=64.8
Q ss_pred ccccCCCcHHHHHHHHHHhC---CCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCcccCCCCccccCChhHHHH
Q 016204 301 VRWMGKPDKIIYKSAMAMVG---VDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATELGLDSYGEVADLSSVQT 375 (393)
Q Consensus 301 ~~~~gKP~p~~~~~~~~~lg---i~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~~~~~~~~~i~~~~~l~~ 375 (393)
.+..+||+|++|..++++++ ++|++|+||||+ ..|+++|+++|+.+|+|.+|.........++.+++++.++..
T Consensus 132 ~~~~~KP~p~~~~~a~~~~~~~~~~~~~~v~IgDs-~~di~aA~~aG~~~i~v~~~~~~~~~~~~~d~vi~~~~e~~~ 208 (220)
T PLN02811 132 EVKQGKPAPDIFLAAARRFEDGPVDPGKVLVFEDA-PSGVEAAKNAGMSVVMVPDPRLDKSYCKGADQVLSSLLDFKP 208 (220)
T ss_pred hccCCCCCcHHHHHHHHHhCCCCCCccceEEEecc-HhhHHHHHHCCCeEEEEeCCCCcHhhhhchhhHhcCHhhCCH
Confidence 45678999999999999997 999999999999 799999999999999999987665555678888998887543
No 61
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=99.53 E-value=1.4e-13 Score=128.90 Aligned_cols=108 Identities=23% Similarity=0.387 Sum_probs=75.5
Q ss_pred EEEEeccccccCCCcCC-ccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCcccceEEeCchhHHHHHHccc
Q 016204 32 AWLLDQFGVLHDGKKPY-PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRD 110 (393)
Q Consensus 32 ~i~~DlDGtL~~g~~~i-pga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~~~~~iits~~~~~~~l~~~~ 110 (393)
+|++|+||||++.+..+ +.+.++|++|+++|++++++| +|....+.+.+.++|++. .+++.+
T Consensus 1 li~~DlDGTLl~~~~~i~~~~~~~i~~l~~~G~~~~iaT--GR~~~~~~~~~~~~~~~~----~~I~~N----------- 63 (256)
T TIGR00099 1 LIFIDLDGTLLNDDHTISPSTKEALAKLREKGIKVVLAT--GRPYKEVKNILKELGLDT----PFITAN----------- 63 (256)
T ss_pred CEEEeCCCCCCCCCCccCHHHHHHHHHHHHCCCeEEEEe--CCCHHHHHHHHHHcCCCC----CEEEcC-----------
Confidence 47999999999987655 789999999999999999999 555556666677777742 233322
Q ss_pred chhhhhcCCeEEEEccCCccccccccCCceeeCCccCcCEEEecCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEe
Q 016204 111 DAWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKIPMVV 190 (393)
Q Consensus 111 ~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (393)
|+-++. ... ..+.. ..++.+.+.++++.+.+.++.+..
T Consensus 64 -------Ga~i~~---------------------~~~-~~i~~-------------~~i~~~~~~~i~~~~~~~~~~~~~ 101 (256)
T TIGR00099 64 -------GAAVID---------------------DQG-EILYK-------------KPLDLDLVEEILNFLKKHGLDVIL 101 (256)
T ss_pred -------CcEEEC---------------------CCC-CEEee-------------cCCCHHHHHHHHHHHHHcCcEEEE
Confidence 221110 000 13333 678889999999988888877766
Q ss_pred ecCceeee
Q 016204 191 ANPDYVTV 198 (393)
Q Consensus 191 ~n~d~~~~ 198 (393)
...+..+.
T Consensus 102 ~~~~~~~~ 109 (256)
T TIGR00099 102 YGDDSIYA 109 (256)
T ss_pred EeCCeEEe
Confidence 66665553
No 62
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.52 E-value=6.6e-13 Score=125.54 Aligned_cols=60 Identities=20% Similarity=0.170 Sum_probs=52.0
Q ss_pred hcCCcEEEEeccccccCCCcCC-ccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCC
Q 016204 27 TRRFKAWLLDQFGVLHDGKKPY-PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (393)
Q Consensus 27 ~~~~k~i~~DlDGtL~~g~~~i-pga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~ 88 (393)
+..+++|++|+||||++.++.+ +.++++|++|+++|++++++| +|+...+.+.+..+|++
T Consensus 4 ~~~~~lI~~DlDGTLL~~~~~i~~~~~~ai~~l~~~Gi~~viaT--GR~~~~i~~~~~~l~~~ 64 (271)
T PRK03669 4 LQDPLLIFTDLDGTLLDSHTYDWQPAAPWLTRLREAQVPVILCS--SKTAAEMLPLQQTLGLQ 64 (271)
T ss_pred cCCCeEEEEeCccCCcCCCCcCcHHHHHHHHHHHHcCCeEEEEc--CCCHHHHHHHHHHhCCC
Confidence 4478999999999999987766 679999999999999999999 77777777777788874
No 63
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=99.52 E-value=3.1e-13 Score=124.39 Aligned_cols=59 Identities=15% Similarity=0.205 Sum_probs=49.8
Q ss_pred cCCcEEEEeccccccCCCcCC-ccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCC
Q 016204 28 RRFKAWLLDQFGVLHDGKKPY-PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (393)
Q Consensus 28 ~~~k~i~~DlDGtL~~g~~~i-pga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~ 88 (393)
|++|++++|+||||++.++.+ |.+.++|++|+++|++++++| +|+.....+.++.+|++
T Consensus 1 m~~kli~~DlDGTLl~~~~~i~~~~~~al~~l~~~G~~~~iaT--GR~~~~~~~~~~~l~~~ 60 (230)
T PRK01158 1 MKIKAIAIDIDGTITDKDRRLSLKAVEAIRKAEKLGIPVILAT--GNVLCFARAAAKLIGTS 60 (230)
T ss_pred CceeEEEEecCCCcCCCCCccCHHHHHHHHHHHHCCCEEEEEc--CCchHHHHHHHHHhCCC
Confidence 458999999999999987766 789999999999999999999 77665555666677774
No 64
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=99.50 E-value=9.9e-14 Score=123.37 Aligned_cols=45 Identities=33% Similarity=0.526 Sum_probs=43.2
Q ss_pred CCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEE
Q 016204 305 GKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFI 350 (393)
Q Consensus 305 gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v 350 (393)
.||+|++|+.+++++|++|++|+||||+ ..|+++|+++|+.+|+|
T Consensus 140 ~KP~p~~~~~~~~~~~~~~~~~l~vgD~-~~di~aA~~~G~~~i~v 184 (184)
T TIGR01993 140 PKPSPQAYEKALREAGVDPERAIFFDDS-ARNIAAAKALGMKTVLV 184 (184)
T ss_pred CCCCHHHHHHHHHHhCCCccceEEEeCC-HHHHHHHHHcCCEEeeC
Confidence 5999999999999999999999999999 79999999999999975
No 65
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=99.50 E-value=1.3e-13 Score=116.64 Aligned_cols=50 Identities=24% Similarity=0.450 Sum_probs=47.4
Q ss_pred CCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCC
Q 016204 305 GKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGI 354 (393)
Q Consensus 305 gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~ 354 (393)
.||.+..|..+++++++++++|+||||.+.+|+.+|+.+|+.||+|..=.
T Consensus 92 ~KP~~~~fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr~G~~tIlV~Pl~ 141 (175)
T COG2179 92 KKPFGRAFRRALKEMNLPPEEVVMVGDQLFTDVLGGNRAGMRTILVEPLV 141 (175)
T ss_pred cCccHHHHHHHHHHcCCChhHEEEEcchhhhhhhcccccCcEEEEEEEec
Confidence 79999999999999999999999999999999999999999999997543
No 66
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=99.49 E-value=7.8e-13 Score=122.29 Aligned_cols=110 Identities=24% Similarity=0.307 Sum_probs=81.1
Q ss_pred EEEeccccccCCCcCC-ccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCcccceEEeCchhHHHHHHcccc
Q 016204 33 WLLDQFGVLHDGKKPY-PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRDD 111 (393)
Q Consensus 33 i~~DlDGtL~~g~~~i-pga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~~~~~iits~~~~~~~l~~~~~ 111 (393)
|++|+||||++.+..+ |.++++|++|+++|++++++| +|......+.+..+++. ..+++.+++.. +.
T Consensus 1 i~~DlDGTLl~~~~~i~~~~~~al~~l~~~g~~~~i~T--GR~~~~~~~~~~~~~~~----~~~I~~nGa~i-~~----- 68 (254)
T PF08282_consen 1 IFSDLDGTLLNSDGKISPETIEALKELQEKGIKLVIAT--GRSYSSIKRLLKELGID----DYFICSNGALI-DD----- 68 (254)
T ss_dssp EEEECCTTTCSTTSSSCHHHHHHHHHHHHTTCEEEEEC--SSTHHHHHHHHHHTTHC----SEEEEGGGTEE-EE-----
T ss_pred cEEEECCceecCCCeeCHHHHHHHHhhcccceEEEEEc--cCcccccccccccccch----hhhccccccee-ee-----
Confidence 6899999998865555 789999999999999999999 77776777777777775 34555433322 00
Q ss_pred hhhhhcCCeEEEEccCCccccccccCCceeeCCccCcCEEEecCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEee
Q 016204 112 AWFAALGRSCIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKIPMVVA 191 (393)
Q Consensus 112 ~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (393)
.+-..+.. ..++.+.+.++++.+.+.+..+...
T Consensus 69 ----------------------------------~~~~~l~~-------------~~i~~~~~~~i~~~~~~~~~~~~~~ 101 (254)
T PF08282_consen 69 ----------------------------------PKGKILYE-------------KPIDSDDVKKILKYLKEHNISFFFY 101 (254)
T ss_dssp ----------------------------------TTTEEEEE-------------ESB-HHHHHHHHHHHHHTTCEEEEE
T ss_pred ----------------------------------cccccchh-------------hheeccchhheeehhhhcccccccc
Confidence 00113333 5688899999999999999999888
Q ss_pred cCceeeeeCC
Q 016204 192 NPDYVTVEAR 201 (393)
Q Consensus 192 n~d~~~~~~~ 201 (393)
.++.++....
T Consensus 102 ~~~~~~~~~~ 111 (254)
T PF08282_consen 102 TDDDIYIYEN 111 (254)
T ss_dssp ESSEEEESST
T ss_pred cceeeecccc
Confidence 8888876544
No 67
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.48 E-value=1.4e-13 Score=124.27 Aligned_cols=52 Identities=31% Similarity=0.519 Sum_probs=46.4
Q ss_pred cccccccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEE
Q 016204 298 GGEVRWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVF 349 (393)
Q Consensus 298 ~~~~~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~ 349 (393)
+++....+||+|++|..+++++|++|++|+||||++.+|+++|+++|+.+|+
T Consensus 152 ~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~IgD~~~~Di~~A~~aG~~~i~ 203 (203)
T TIGR02252 152 TSYEVGAEKPDPKIFQEALERAGISPEEALHIGDSLRNDYQGARAAGWRALL 203 (203)
T ss_pred eecccCCCCCCHHHHHHHHHHcCCChhHEEEECCCchHHHHHHHHcCCeeeC
Confidence 3445667899999999999999999999999999944899999999999985
No 68
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.48 E-value=1.7e-13 Score=123.22 Aligned_cols=55 Identities=20% Similarity=0.350 Sum_probs=50.3
Q ss_pred cccccccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCC
Q 016204 298 GGEVRWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGG 353 (393)
Q Consensus 298 ~~~~~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G 353 (393)
+++.....||+|++|+.+++++|++|++|++|||+ .+|+++|+++|+.+|+|..+
T Consensus 140 ~s~~~~~~KP~~~~~~~~~~~~~~~p~~~~~vgD~-~~Di~~A~~~G~~~i~v~r~ 194 (198)
T TIGR01428 140 SADAVRAYKPAPQVYQLALEALGVPPDEVLFVASN-PWDLGGAKKFGFKTAWVNRP 194 (198)
T ss_pred ehhhcCCCCCCHHHHHHHHHHhCCChhhEEEEeCC-HHHHHHHHHCCCcEEEecCC
Confidence 44556778999999999999999999999999999 69999999999999999754
No 69
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.48 E-value=1.9e-13 Score=122.96 Aligned_cols=65 Identities=14% Similarity=0.189 Sum_probs=56.0
Q ss_pred CCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHc--CCeEEEEcCCCCCcccCCCCccccCChhHHH
Q 016204 305 GKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAA--GIQSVFIIGGIHATELGLDSYGEVADLSSVQ 374 (393)
Q Consensus 305 gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~a--G~~~i~v~~G~~~~~~~~~~~~~i~~~~~l~ 374 (393)
.||+|++|..+++++| |++++||||+ .+|+++|++| |+++|++.+|.. +....+++.+.|++++.
T Consensus 129 ~~~kp~~~~~a~~~~~--~~~~v~vgDs-~~di~aA~~a~~Gi~~i~~~~~~~--~~~~~~~~~~~~~~~~~ 195 (197)
T PHA02597 129 DESKEKLFIKAKEKYG--DRVVCFVDDL-AHNLDAAHEALSQLPVIHMLRGER--DHIPKLAHRVKSWNDIE 195 (197)
T ss_pred CcccHHHHHHHHHHhC--CCcEEEeCCC-HHHHHHHHHHHcCCcEEEecchhh--ccccchhhhhccHHHHh
Confidence 5788999999999999 8899999999 7999999999 999999999964 33335567888888875
No 70
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.45 E-value=1.3e-12 Score=123.75 Aligned_cols=59 Identities=24% Similarity=0.214 Sum_probs=49.8
Q ss_pred cCCcEEEEeccccccC-CCcCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCC
Q 016204 28 RRFKAWLLDQFGVLHD-GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (393)
Q Consensus 28 ~~~k~i~~DlDGtL~~-g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~ 88 (393)
|++|++++|+||||++ ++...+++.++|++|+++|++++++| +|+...+...+..+|+.
T Consensus 2 ~~~kli~~DlDGTLl~~~~~~~~~~~~ai~~l~~~Gi~~~iaT--gR~~~~~~~~~~~l~l~ 61 (273)
T PRK00192 2 MMKLLVFTDLDGTLLDHHTYSYEPAKPALKALKEKGIPVIPCT--SKTAAEVEVLRKELGLE 61 (273)
T ss_pred CcceEEEEcCcccCcCCCCcCcHHHHHHHHHHHHCCCEEEEEc--CCCHHHHHHHHHHcCCC
Confidence 3589999999999999 55677899999999999999999999 55555666667778874
No 71
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=99.45 E-value=3.5e-13 Score=118.19 Aligned_cols=51 Identities=12% Similarity=0.224 Sum_probs=45.3
Q ss_pred CCCcHHHHHHHHHHh--CCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCC
Q 016204 305 GKPDKIIYKSAMAMV--GVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHA 356 (393)
Q Consensus 305 gKP~p~~~~~~~~~l--gi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~ 356 (393)
.||.+.+++.+.+.+ |++|++|+||||+ ..|+++|+++|+.++++.+|...
T Consensus 110 ~kp~~~i~~~~~~~~~~gl~p~e~l~VgDs-~~di~aA~~aGi~~i~v~~g~~~ 162 (174)
T TIGR01685 110 AKQLEMILQKVNKVDPSVLKPAQILFFDDR-TDNVREVWGYGVTSCYCPSGMDK 162 (174)
T ss_pred HHHHHHHHHHhhhcccCCCCHHHeEEEcCh-hHhHHHHHHhCCEEEEcCCCccH
Confidence 577778888887877 8999999999999 79999999999999999998643
No 72
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=99.44 E-value=1e-12 Score=116.15 Aligned_cols=50 Identities=34% Similarity=0.476 Sum_probs=46.4
Q ss_pred cccccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEE
Q 016204 300 EVRWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFI 350 (393)
Q Consensus 300 ~~~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v 350 (393)
+....+||+|++|+.+++++|++|++|++|||+ ..|+++|+++|+.+|+|
T Consensus 134 ~~~~~~KP~~~~~~~~~~~~~~~~~~~~~vgD~-~~di~aA~~~G~~~i~v 183 (183)
T TIGR01509 134 GDVGRGKPDPDIYLLALKKLGLKPEECLFVDDS-PAGIEAAKAAGMHTVLV 183 (183)
T ss_pred CCCCCCCCCHHHHHHHHHHcCCCcceEEEEcCC-HHHHHHHHHcCCEEEeC
Confidence 445679999999999999999999999999999 69999999999999975
No 73
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=99.43 E-value=7.5e-13 Score=119.09 Aligned_cols=42 Identities=33% Similarity=0.366 Sum_probs=37.7
Q ss_pred cccccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHc
Q 016204 300 EVRWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAA 343 (393)
Q Consensus 300 ~~~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~a 343 (393)
+.... ||+|++|..+++++|+++++|+||||+ .+|+++|+++
T Consensus 156 ~~~~~-KP~p~~~~~~~~~~~~~~~~~i~vGD~-~~Di~aA~~a 197 (197)
T TIGR01548 156 EDCPP-KPNPEPLILAAKALGVEACHAAMVGDT-VDDIITGRKA 197 (197)
T ss_pred cCCCC-CcCHHHHHHHHHHhCcCcccEEEEeCC-HHHHHHHHhC
Confidence 33444 999999999999999999999999999 6999999875
No 74
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=99.42 E-value=1.8e-12 Score=107.89 Aligned_cols=49 Identities=37% Similarity=0.445 Sum_probs=45.1
Q ss_pred ccccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEE
Q 016204 301 VRWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFI 350 (393)
Q Consensus 301 ~~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v 350 (393)
....+||++..+..++++++.+++++++|||+ .+|+++++++|+.+++|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~igD~-~~d~~~~~~~g~~~i~v 139 (139)
T cd01427 91 PFDIGKPNPDKLLAALKLLGVDPEEVLMVGDS-LNDIEMAKAAGGLGVAV 139 (139)
T ss_pred ccccCCCCHHHHHHHHHHcCCChhhEEEeCCC-HHHHHHHHHcCCceeeC
Confidence 45668999999999999999999999999999 79999999999999875
No 75
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=99.42 E-value=1.3e-12 Score=117.85 Aligned_cols=57 Identities=28% Similarity=0.434 Sum_probs=51.0
Q ss_pred ccccccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCC
Q 016204 299 GEVRWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHA 356 (393)
Q Consensus 299 ~~~~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~ 356 (393)
++....+||+|++|+.+++++|++|++|++|||+ ..|+++|+++|+.+|++.++..-
T Consensus 134 s~~~~~~KP~p~~~~~~~~~~~~~p~~~l~vgD~-~~di~aA~~aG~~~i~~~~~~~~ 190 (199)
T PRK09456 134 SQDLGMRKPEARIYQHVLQAEGFSAADAVFFDDN-ADNIEAANALGITSILVTDKQTI 190 (199)
T ss_pred ecccCCCCCCHHHHHHHHHHcCCChhHeEEeCCC-HHHHHHHHHcCCEEEEecCCccH
Confidence 3455678999999999999999999999999999 79999999999999999876443
No 76
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.40 E-value=1.2e-12 Score=114.05 Aligned_cols=52 Identities=29% Similarity=0.515 Sum_probs=48.5
Q ss_pred cccccccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEE
Q 016204 298 GGEVRWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFI 350 (393)
Q Consensus 298 ~~~~~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v 350 (393)
+.+.....||+|++|+.+++++|++|++|++|||+ ..|+++|+++|+.+|+|
T Consensus 125 ~~~~~~~~Kp~~~~~~~~~~~~~~~p~~~~~vgD~-~~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 125 SSDDVGSRKPDPDAYRRALEKLGIPPEEILFVGDS-PSDVEAAKEAGIKTIWV 176 (176)
T ss_dssp EGGGSSSSTTSHHHHHHHHHHHTSSGGGEEEEESS-HHHHHHHHHTTSEEEEE
T ss_pred ccchhhhhhhHHHHHHHHHHHcCCCcceEEEEeCC-HHHHHHHHHcCCeEEeC
Confidence 45667779999999999999999999999999999 69999999999999986
No 77
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=99.40 E-value=4.5e-12 Score=122.96 Aligned_cols=50 Identities=22% Similarity=0.289 Sum_probs=46.9
Q ss_pred cccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcC
Q 016204 302 RWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIG 352 (393)
Q Consensus 302 ~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~ 352 (393)
...+||+|.++..+++++++++++++||||+ .+|+++|+++|+++|+|..
T Consensus 100 ~~~rKP~p~~l~~a~~~l~v~~~~svmIGDs-~sDi~aAk~aGi~~I~v~~ 149 (354)
T PRK05446 100 CSCRKPKTGLVEEYLAEGAIDLANSYVIGDR-ETDVQLAENMGIKGIRYAR 149 (354)
T ss_pred CCCCCCCHHHHHHHHHHcCCCcccEEEEcCC-HHHHHHHHHCCCeEEEEEC
Confidence 3568999999999999999999999999999 7999999999999999954
No 78
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.40 E-value=1.4e-12 Score=118.52 Aligned_cols=54 Identities=24% Similarity=0.348 Sum_probs=49.1
Q ss_pred cccccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCC
Q 016204 300 EVRWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGI 354 (393)
Q Consensus 300 ~~~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~ 354 (393)
+.....||+|.+|+.+++++|++|++|+||||+ ..|+++|+++|+.+|++.++.
T Consensus 146 ~~~~~~KP~p~~~~~~~~~~g~~~~~~l~i~D~-~~di~aA~~aG~~~i~v~~~~ 199 (211)
T TIGR02247 146 CLEGLRKPDPRIYQLMLERLGVAPEECVFLDDL-GSNLKPAAALGITTIKVSDEE 199 (211)
T ss_pred eecCCCCCCHHHHHHHHHHcCCCHHHeEEEcCC-HHHHHHHHHcCCEEEEECCHH
Confidence 344568999999999999999999999999999 799999999999999998653
No 79
>PLN02954 phosphoserine phosphatase
Probab=99.39 E-value=1.1e-11 Score=113.57 Aligned_cols=71 Identities=14% Similarity=0.202 Sum_probs=54.7
Q ss_pred cCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCcc-cCCCCccccCChhHHHHHH
Q 016204 304 MGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATE-LGLDSYGEVADLSSVQTLV 377 (393)
Q Consensus 304 ~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~-~~~~~~~~i~~~~~l~~~l 377 (393)
.++|+|..++.+++++|. ++|+||||+ .+|+.+|+++|+..+.+.++....+ ....++++++++.+|.+++
T Consensus 152 ~~~~K~~~i~~~~~~~~~--~~~i~iGDs-~~Di~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~el~~~~ 223 (224)
T PLN02954 152 RSGGKAEAVQHIKKKHGY--KTMVMIGDG-ATDLEARKPGGADLFIGYGGVQVREAVAAKADWFVTDFQDLIEVL 223 (224)
T ss_pred CCccHHHHHHHHHHHcCC--CceEEEeCC-HHHHHhhhcCCCCEEEecCCCccCHHHHhcCCEEECCHHHHHHhh
Confidence 456778899999999885 689999999 7999999998988765544433333 2256888999999887754
No 80
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=99.39 E-value=4e-12 Score=115.14 Aligned_cols=118 Identities=23% Similarity=0.158 Sum_probs=86.1
Q ss_pred ccEEEEecCCccccCHHHHHHHH--HHHhcCCCCChHHHHHHHhCC---------------CchHHHHHHH---------
Q 016204 233 TDLILFDLKNFNLVSVDIIYSSH--KLLSRNFSISKNFTFRNFIGL---------------PFVYECVLII--------- 286 (393)
Q Consensus 233 ~k~iiFD~DGTL~ds~~~~~~~~--~l~~~~~~~~~~~~~~~~~g~---------------~~~~~~~~~~--------- 286 (393)
+.+++|||||||+||+..+.+++ .+.+++. ..+.+......|. |...+++...
T Consensus 10 ~~~~lfD~dG~lvdte~~y~~~~~~~~~~ygk-~~~~~~~~~~mG~~~~eaa~~~~~~~~dp~s~ee~~~e~~~~~~~~~ 88 (222)
T KOG2914|consen 10 VSACLFDMDGTLVDTEDLYTEAWQELLDRYGK-PYPWDVKVKSMGKRTSEAARLFVKKLPDPVSREEFNKEEEEILDRLF 88 (222)
T ss_pred eeeEEEecCCcEEecHHHHHHHHHHHHHHcCC-CChHHHHHHHcCCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhc
Confidence 46899999999999999999999 5667776 5555444444443 2222220000
Q ss_pred ----------------------hhhhccccc-------------------c-c-cccccccCCCcHHHHHHHHHHhCCCC
Q 016204 287 ----------------------LGTLASKFE-------------------K-L-GGEVRWMGKPDKIIYKSAMAMVGVDA 323 (393)
Q Consensus 287 ----------------------~g~~~~~~~-------------------~-~-~~~~~~~gKP~p~~~~~~~~~lgi~~ 323 (393)
.++.++..+ . . ....+..|||+|++|..+++++|..|
T Consensus 89 ~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~~f~~~v~~d~~~v~~gKP~Pdi~l~A~~~l~~~~ 168 (222)
T KOG2914|consen 89 MNSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFKNFSHVVLGDDPEVKNGKPDPDIYLKAAKRLGVPP 168 (222)
T ss_pred cccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHHhcCCCeecCCccccCCCCCchHHHHHHHhcCCCC
Confidence 111111111 0 1 24457789999999999999999988
Q ss_pred -CcEEEEecCchhhHHHHHHcCCeEEEEcC
Q 016204 324 -CDSIAVGDSLHHDIKGANAAGIQSVFIIG 352 (393)
Q Consensus 324 -~~~v~VGDsl~~Di~~a~~aG~~~i~v~~ 352 (393)
+.|++|+|+ ..++++|++|||.+|+|.+
T Consensus 169 ~~k~lVfeds-~~Gv~aa~aagm~vi~v~~ 197 (222)
T KOG2914|consen 169 PSKCLVFEDS-PVGVQAAKAAGMQVVGVAT 197 (222)
T ss_pred ccceEEECCC-HHHHHHHHhcCCeEEEecC
Confidence 999999999 7999999999999999998
No 81
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.39 E-value=4.3e-12 Score=121.62 Aligned_cols=49 Identities=14% Similarity=0.110 Sum_probs=46.4
Q ss_pred CCCcHHHHHHHHHHhCC-CCCcEEEEecCchhhHHHHHHcCCeEEEEcCCC
Q 016204 305 GKPDKIIYKSAMAMVGV-DACDSIAVGDSLHHDIKGANAAGIQSVFIIGGI 354 (393)
Q Consensus 305 gKP~p~~~~~~~~~lgi-~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~ 354 (393)
+||+|++++.++++++. ++++|+||||+ .+|+++|+++|+.+++|.+|.
T Consensus 250 ~kp~p~~~~~~l~~~~~~~~~~~~~vgD~-~~d~~~a~~~Gi~~i~v~~g~ 299 (300)
T PHA02530 250 KRPDDVVKEEIFWEKIAPKYDVLLAVDDR-DQVVDMWRRIGLECWQVAPGD 299 (300)
T ss_pred CCCcHHHHHHHHHHHhccCceEEEEEcCc-HHHHHHHHHhCCeEEEecCCC
Confidence 79999999999999988 67999999999 799999999999999999884
No 82
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=99.38 E-value=4.6e-12 Score=116.42 Aligned_cols=55 Identities=24% Similarity=0.170 Sum_probs=48.4
Q ss_pred EEEEeccccccCCCcCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCC
Q 016204 32 AWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (393)
Q Consensus 32 ~i~~DlDGtL~~g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~ 88 (393)
+|+||+||||++.+..++++.++|++|+++|++++++| +|+...+.+.+.++|+.
T Consensus 1 li~~DlDGTLl~~~~~~~~~~~ai~~l~~~G~~~vi~T--gR~~~~~~~~~~~lg~~ 55 (225)
T TIGR02461 1 VIFTDLDGTLLPPGYEPGPAREALEELKDLGFPIVFVS--SKTRAEQEYYREELGVE 55 (225)
T ss_pred CEEEeCCCCCcCCCCCchHHHHHHHHHHHCCCEEEEEe--CCCHHHHHHHHHHcCCC
Confidence 48999999999987888899999999999999999999 66666677778888874
No 83
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=99.38 E-value=6.2e-12 Score=115.24 Aligned_cols=53 Identities=17% Similarity=0.227 Sum_probs=44.3
Q ss_pred EEEeccccccCCCcCC-ccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCC
Q 016204 33 WLLDQFGVLHDGKKPY-PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGF 87 (393)
Q Consensus 33 i~~DlDGtL~~g~~~i-pga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~ 87 (393)
|++|+||||++....+ |.+.++|++|+++|++++++| +|......+.++.+|+
T Consensus 1 i~~DlDGTLl~~~~~i~~~~~~al~~l~~~Gi~~~~aT--GR~~~~~~~~~~~l~~ 54 (225)
T TIGR01482 1 IASDIDGTLTDPNRAINESALEAIRKAESVGIPVVLVT--GNSVQFARALAKLIGT 54 (225)
T ss_pred CeEeccCccCCCCcccCHHHHHHHHHHHHCCCEEEEEc--CCchHHHHHHHHHhCC
Confidence 5899999999987655 789999999999999999999 6666555566667775
No 84
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=99.38 E-value=2.7e-11 Score=105.91 Aligned_cols=73 Identities=27% Similarity=0.313 Sum_probs=60.6
Q ss_pred cccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCcccC-CCCccccCChhHHHH
Q 016204 302 RWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATELG-LDSYGEVADLSSVQT 375 (393)
Q Consensus 302 ~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~~~-~~~~~~i~~~~~l~~ 375 (393)
..+.||++-+++.+++++++++++.++|||+ .+|+++|.++|+..+.+.+|......- ...+...+++.++..
T Consensus 101 c~cRKP~~gm~~~~~~~~~iD~~~s~~VGD~-~~Dlq~a~n~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (181)
T COG0241 101 CDCRKPKPGMLLSALKEYNIDLSRSYVVGDR-LTDLQAAENAGIKGVLVLTGIGVTTDGAGRAKWVFDSLAEFAN 174 (181)
T ss_pred CcccCCChHHHHHHHHHhCCCccceEEecCc-HHHHHHHHHCCCCceEEEcCcccccccccccccccccHHHHHH
Confidence 5679999999999999999999999999999 699999999999999999997765432 133455666666553
No 85
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=99.37 E-value=9.5e-12 Score=113.47 Aligned_cols=57 Identities=14% Similarity=0.166 Sum_probs=46.0
Q ss_pred CcEEEEeccccccCCCcCC-ccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCC
Q 016204 30 FKAWLLDQFGVLHDGKKPY-PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (393)
Q Consensus 30 ~k~i~~DlDGtL~~g~~~i-pga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~ 88 (393)
+|+|++|+||||++.+..+ |.+.++|++|+++|++++++| +|....+.+.+..++++
T Consensus 1 ik~v~~DlDGTLl~~~~~i~~~~~~~i~~l~~~g~~~~~~T--GR~~~~~~~~~~~l~~~ 58 (215)
T TIGR01487 1 IKLVAIDIDGTLTEPNRMISERAIEAIRKAEKKGIPVSLVT--GNTVPFARALAVLIGTS 58 (215)
T ss_pred CcEEEEecCCCcCCCCcccCHHHHHHHHHHHHCCCEEEEEc--CCcchhHHHHHHHhCCC
Confidence 5799999999999876655 799999999999999999999 55544454555566664
No 86
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.37 E-value=1.2e-11 Score=112.90 Aligned_cols=67 Identities=19% Similarity=0.237 Sum_probs=51.5
Q ss_pred CCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCcccCCCCccccC--ChhHHHHH
Q 016204 305 GKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATELGLDSYGEVA--DLSSVQTL 376 (393)
Q Consensus 305 gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~~~~~~~~~i~--~~~~l~~~ 376 (393)
++|+|.+|+.+++++++++++|+||||+ .+|+++|+++|+..+ +. + +......+++++. ++.++..+
T Consensus 150 ~~~k~~~~~~~~~~~~~~~~~~i~iGDs-~~Di~aa~~ag~~i~-~~-~--~~~~~~~a~~~i~~~~~~~~~~~ 218 (219)
T TIGR00338 150 ASYKGKTLLILLRKEGISPENTVAVGDG-ANDLSMIKAAGLGIA-FN-A--KPKLQQKADICINKKDLTDILPL 218 (219)
T ss_pred CcccHHHHHHHHHHcCCCHHHEEEEECC-HHHHHHHHhCCCeEE-eC-C--CHHHHHhchhccCCCCHHHHHhh
Confidence 4677999999999999999999999999 799999999999753 32 2 2222245666665 66776654
No 87
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=99.36 E-value=3.1e-11 Score=110.45 Aligned_cols=55 Identities=24% Similarity=0.252 Sum_probs=44.2
Q ss_pred EEEEeccccccCCCc-CCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCC
Q 016204 32 AWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (393)
Q Consensus 32 ~i~~DlDGtL~~g~~-~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~ 88 (393)
.|++|+||||++.++ .++.+.++|++|+++|++++++| +|+.....+.++.+|++
T Consensus 1 ~i~~DlDGTLL~~~~~~~~~~~~~l~~l~~~gi~~~i~T--gR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 1 WVFSDLDGTLLDSHSYDWQPAAPWLTRLQEAGIPVILCT--SKTAAEVEYLQKALGLT 56 (221)
T ss_pred CEEEeCCCCCcCCCCCCcHHHHHHHHHHHHCCCeEEEEc--CCCHHHHHHHHHHcCCC
Confidence 479999999999776 55669999999999999999999 55555555556667764
No 88
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=99.35 E-value=6.8e-12 Score=108.08 Aligned_cols=44 Identities=34% Similarity=0.603 Sum_probs=39.6
Q ss_pred cccccccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcC
Q 016204 298 GGEVRWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAG 344 (393)
Q Consensus 298 ~~~~~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG 344 (393)
+.+... +||+|++|..+++++|+++ +|++|||+ ..|+++|+++|
T Consensus 111 ~~~~~~-~Kp~~~~~~~~~~~~~~~~-~~l~iGDs-~~Di~aa~~aG 154 (154)
T TIGR01549 111 GSDEFG-AKPEPEIFLAALESLGLPP-EVLHVGDN-LNDIEGARNAG 154 (154)
T ss_pred ecCCCC-CCcCHHHHHHHHHHcCCCC-CEEEEeCC-HHHHHHHHHcc
Confidence 334455 8999999999999999999 99999999 79999999987
No 89
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=99.34 E-value=5.7e-12 Score=118.10 Aligned_cols=55 Identities=25% Similarity=0.242 Sum_probs=48.9
Q ss_pred EEEEeccccccCCCc-CCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCC
Q 016204 32 AWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (393)
Q Consensus 32 ~i~~DlDGtL~~g~~-~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~ 88 (393)
++++|+||||++..+ .++.+.++|++|+++|++++++| +|....+.+.++++|++
T Consensus 1 li~~DlDGTll~~~~~~~~~~~~~i~~l~~~g~~~~~~T--gR~~~~~~~~~~~~~~~ 56 (256)
T TIGR01486 1 WIFTDLDGTLLDPHGYDWGPAKEVLERLQELGIPVIPCT--SKTAAEVEYLRKELGLE 56 (256)
T ss_pred CEEEcCCCCCcCCCCcCchHHHHHHHHHHHCCCeEEEEc--CCCHHHHHHHHHHcCCC
Confidence 479999999999887 77889999999999999999999 77777777888888874
No 90
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=99.33 E-value=7.7e-12 Score=108.10 Aligned_cols=61 Identities=11% Similarity=0.042 Sum_probs=48.9
Q ss_pred CCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCcccCCCCccccCCh
Q 016204 306 KPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATELGLDSYGEVADL 370 (393)
Q Consensus 306 KP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~~~~~~~~~i~~~ 370 (393)
||+|+++..+++++|+++++|+||||+ .+|+++++++|+. +++.++.. .....+++++++.
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~~~~vGDs-~~D~~~~~~ag~~-~~v~~~~~--~~~~~a~~i~~~~ 135 (154)
T TIGR01670 75 SNKLIAFSDILEKLALAPENVAYIGDD-LIDWPVMEKVGLS-VAVADAHP--LLIPRADYVTRIA 135 (154)
T ss_pred cchHHHHHHHHHHcCCCHHHEEEECCC-HHHHHHHHHCCCe-EecCCcCH--HHHHhCCEEecCC
Confidence 566889999999999999999999999 7999999999997 77776643 2223456565543
No 91
>PTZ00174 phosphomannomutase; Provisional
Probab=99.31 E-value=4.1e-11 Score=111.76 Aligned_cols=54 Identities=22% Similarity=0.272 Sum_probs=46.2
Q ss_pred cCCcEEEEeccccccCCCcCC-ccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHH
Q 016204 28 RRFKAWLLDQFGVLHDGKKPY-PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLK 83 (393)
Q Consensus 28 ~~~k~i~~DlDGtL~~g~~~i-pga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~ 83 (393)
|++|+|++|+||||++.++.+ |.+.++|++|+++|++++++| +|+...+.+.+.
T Consensus 3 ~~~klia~DlDGTLL~~~~~is~~~~~ai~~l~~~Gi~~viaT--GR~~~~i~~~l~ 57 (247)
T PTZ00174 3 MKKTILLFDVDGTLTKPRNPITQEMKDTLAKLKSKGFKIGVVG--GSDYPKIKEQLG 57 (247)
T ss_pred CCCeEEEEECcCCCcCCCCCCCHHHHHHHHHHHHCCCEEEEEc--CCCHHHHHHHHh
Confidence 579999999999999987755 789999999999999999999 676666655553
No 92
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=99.31 E-value=5.5e-12 Score=111.04 Aligned_cols=45 Identities=22% Similarity=0.336 Sum_probs=40.9
Q ss_pred cccccccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHc
Q 016204 298 GGEVRWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAA 343 (393)
Q Consensus 298 ~~~~~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~a 343 (393)
+.+.+..+||+|++|+.+++++|++|++|+||||+ ..|+++|+++
T Consensus 131 ~~~~~~~~KP~p~~f~~~~~~~~~~p~~~l~vgD~-~~Di~~A~~~ 175 (175)
T TIGR01493 131 SVDTVRAYKPDPVVYELVFDTVGLPPDRVLMVAAH-QWDLIGARKF 175 (175)
T ss_pred cHhhcCCCCCCHHHHHHHHHHHCCCHHHeEeEecC-hhhHHHHhcC
Confidence 45566789999999999999999999999999999 7999999864
No 93
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=99.29 E-value=1.1e-11 Score=110.16 Aligned_cols=66 Identities=12% Similarity=0.100 Sum_probs=51.0
Q ss_pred cHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCcccCCCCccccC------ChhHHHHHH
Q 016204 308 DKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATELGLDSYGEVA------DLSSVQTLV 377 (393)
Q Consensus 308 ~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~~~~~~~~~i~------~~~~l~~~l 377 (393)
++..+..+++++|+++++++||||+ .+|+++++++|+.. .+.++ .......++++++ .+.++.+++
T Consensus 97 k~~~l~~~~~~~gl~~~ev~~VGDs-~~D~~~a~~aG~~~-~v~~~--~~~~~~~a~~v~~~~~g~g~~~el~~~i 168 (183)
T PRK09484 97 KLIAFSDLLEKLAIAPEQVAYIGDD-LIDWPVMEKVGLSV-AVADA--HPLLLPRADYVTRIAGGRGAVREVCDLL 168 (183)
T ss_pred HHHHHHHHHHHhCCCHHHEEEECCC-HHHHHHHHHCCCeE-ecCCh--hHHHHHhCCEEecCCCCCCHHHHHHHHH
Confidence 4679999999999999999999999 79999999999984 45422 2222245677775 578877754
No 94
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=99.24 E-value=4.7e-10 Score=104.72 Aligned_cols=53 Identities=13% Similarity=0.256 Sum_probs=46.8
Q ss_pred cccccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCC
Q 016204 300 EVRWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGG 353 (393)
Q Consensus 300 ~~~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G 353 (393)
+....+.++...++.+++++|++++++++|||+ .||++|++.++..++++..+
T Consensus 160 di~~~~~~K~~al~~l~~~~~i~~~~~i~~GD~-~ND~~ml~~~~~~~va~~na 212 (249)
T TIGR01485 160 DILPQGSGKGQALQYLLQKLAMEPSQTLVCGDS-GNDIELFEIGSVRGVIVSNA 212 (249)
T ss_pred EEEeCCCChHHHHHHHHHHcCCCccCEEEEECC-hhHHHHHHccCCcEEEECCC
Confidence 445667788999999999999999999999999 79999999988888888654
No 95
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=99.21 E-value=5.4e-11 Score=104.07 Aligned_cols=44 Identities=16% Similarity=0.219 Sum_probs=40.3
Q ss_pred CCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEE
Q 016204 306 KPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFI 350 (393)
Q Consensus 306 KP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v 350 (393)
||+|+.++.+++++++++++|++|||+ .||+++++.+|+..+.-
T Consensus 81 kpkp~~~~~~~~~l~~~~~ev~~iGD~-~nDi~~~~~ag~~~am~ 124 (169)
T TIGR02726 81 KKKTEPYAQMLEEMNISDAEVCYVGDD-LVDLSMMKRVGLAVAVG 124 (169)
T ss_pred CCCHHHHHHHHHHcCcCHHHEEEECCC-HHHHHHHHHCCCeEECc
Confidence 688999999999999999999999999 79999999999876543
No 96
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.21 E-value=2.7e-10 Score=109.80 Aligned_cols=71 Identities=15% Similarity=0.191 Sum_probs=55.7
Q ss_pred ccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCcccCCCCccccC--ChhHHHHHHH
Q 016204 303 WMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATELGLDSYGEVA--DLSSVQTLVS 378 (393)
Q Consensus 303 ~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~~~~~~~~~i~--~~~~l~~~l~ 378 (393)
..+||+++.++.+++++|+++++|++|||+ .||+.|++.||+..++ ...+.....++..++ ++..+.-++.
T Consensus 244 v~~k~K~~~L~~la~~lgi~~~qtIaVGDg-~NDl~m~~~AGlgiA~----nAkp~Vk~~Ad~~i~~~~l~~~l~~~~ 316 (322)
T PRK11133 244 VDAQYKADTLTRLAQEYEIPLAQTVAIGDG-ANDLPMIKAAGLGIAY----HAKPKVNEQAQVTIRHADLMGVLCILS 316 (322)
T ss_pred CCcccHHHHHHHHHHHcCCChhhEEEEECC-HHHHHHHHHCCCeEEe----CCCHHHHhhCCEEecCcCHHHHHHHhc
Confidence 346889999999999999999999999999 7999999999997765 233444456777776 5555555443
No 97
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=99.19 E-value=7.5e-10 Score=114.14 Aligned_cols=61 Identities=20% Similarity=0.178 Sum_probs=50.6
Q ss_pred hhcCCcEEEEeccccccCCCc-CCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCC
Q 016204 26 ETRRFKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (393)
Q Consensus 26 ~~~~~k~i~~DlDGtL~~g~~-~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~ 88 (393)
++|..|+|++|+||||++.+. ..+.+.++|++|+++|++++++| +|....+.+.++.+|++
T Consensus 412 ~~~~~KLIfsDLDGTLLd~d~~i~~~t~eAL~~L~ekGI~~VIAT--GRs~~~i~~l~~~Lgl~ 473 (694)
T PRK14502 412 SGQFKKIVYTDLDGTLLNPLTYSYSTALDALRLLKDKELPLVFCS--AKTMGEQDLYRNELGIK 473 (694)
T ss_pred cCceeeEEEEECcCCCcCCCCccCHHHHHHHHHHHHcCCeEEEEe--CCCHHHHHHHHHHcCCC
Confidence 356789999999999999655 55789999999999999999999 76666666666777774
No 98
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.19 E-value=1.9e-09 Score=100.93 Aligned_cols=57 Identities=21% Similarity=0.191 Sum_probs=48.8
Q ss_pred CcEEEEeccccccCCCc-CCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCC
Q 016204 30 FKAWLLDQFGVLHDGKK-PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (393)
Q Consensus 30 ~k~i~~DlDGtL~~g~~-~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~ 88 (393)
+|+|++|+||||++.+. ..+.+.++|++|+++|++|+++| +|...++...++++|++
T Consensus 1 ~KLIftDLDGTLLd~~~~~~~~a~~aL~~Lk~~GI~vVlaT--GRt~~ev~~l~~~Lgl~ 58 (302)
T PRK12702 1 MRLVLSSLDGSLLDLEFNSYGAARQALAALERRSIPLVLYS--LRTRAQLEHLCRQLRLE 58 (302)
T ss_pred CcEEEEeCCCCCcCCCCcCCHHHHHHHHHHHHCCCEEEEEc--CCCHHHHHHHHHHhCCC
Confidence 47999999999999655 55789999999999999999999 77777777777788875
No 99
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.19 E-value=5.1e-11 Score=108.45 Aligned_cols=61 Identities=26% Similarity=0.433 Sum_probs=54.4
Q ss_pred cccccccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCcc
Q 016204 298 GGEVRWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATE 358 (393)
Q Consensus 298 ~~~~~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~ 358 (393)
.+......||+|.+|+.+++++++.|++|++|||++.||+++|+++||.+++|........
T Consensus 160 ~S~e~g~~KPDp~If~~al~~l~v~Pee~vhIgD~l~nD~~gA~~~G~~ailv~~~~~~~~ 220 (237)
T KOG3085|consen 160 ESCEVGLEKPDPRIFQLALERLGVKPEECVHIGDLLENDYEGARNLGWHAILVDNSITALK 220 (237)
T ss_pred hhhhhccCCCChHHHHHHHHHhCCChHHeEEecCccccccHhHHHcCCEEEEEccccchhh
Confidence 3455778999999999999999999999999999999999999999999999986655433
No 100
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=99.14 E-value=2.1e-10 Score=95.99 Aligned_cols=42 Identities=19% Similarity=0.213 Sum_probs=37.7
Q ss_pred cEEEEeccccccCCC-------------cCCccHHHHHHHHHHCCCeEEEEcCCC
Q 016204 31 KAWLLDQFGVLHDGK-------------KPYPGAISTLEMLATTGAKMVVISNSS 72 (393)
Q Consensus 31 k~i~~DlDGtL~~g~-------------~~ipga~eal~~L~~~G~~v~~~TN~~ 72 (393)
|+++||+|||||.+. +++||+.++|+.|+++|++++++||++
T Consensus 1 kli~~DlD~Tl~~~~~~~~~~~~~~~~~~~~~gv~e~L~~Lk~~g~~l~i~Sn~~ 55 (128)
T TIGR01681 1 KVIVFDLDNTLWTGENIVVGEDPIIDLEVTIKEIRDKLQTLKKNGFLLALASYND 55 (128)
T ss_pred CEEEEeCCCCCCCCCcccccCCcchhhHHHHHHHHHHHHHHHHCCeEEEEEeCCC
Confidence 589999999999983 258999999999999999999999873
No 101
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=99.14 E-value=2.5e-10 Score=105.13 Aligned_cols=53 Identities=25% Similarity=0.272 Sum_probs=41.8
Q ss_pred cccccccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCcc
Q 016204 298 GGEVRWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATE 358 (393)
Q Consensus 298 ~~~~~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~ 358 (393)
+.+.....||++. .+++++++ ++||||+ .+|+.+|++||+++|.|.+|.++.-
T Consensus 166 ~~d~~~~~Kp~~~---~~l~~~~i----~i~vGDs-~~DI~aAk~AGi~~I~V~~g~~s~~ 218 (237)
T TIGR01672 166 AGDKPGQYQYTKT---QWIQDKNI----RIHYGDS-DNDITAAKEAGARGIRILRASNSTY 218 (237)
T ss_pred CCCCCCCCCCCHH---HHHHhCCC----eEEEeCC-HHHHHHHHHCCCCEEEEEecCCCCC
Confidence 4444445677764 35567776 8999999 7999999999999999999988654
No 102
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=99.12 E-value=1.3e-09 Score=100.81 Aligned_cols=65 Identities=11% Similarity=0.053 Sum_probs=52.4
Q ss_pred EEEEeccccccCCCcCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCcccceEEeCchh
Q 016204 32 AWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (393)
Q Consensus 32 ~i~~DlDGtL~~g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~~~~~iits~~~ 101 (393)
++++|+||||++.+..++...++++ ++++|++++++| +|+...+.+.+..+++. .. +.+++.+++
T Consensus 1 li~~DlDgTLl~~~~~~~~~~~~~~-~~~~gi~~viaT--GR~~~~v~~~~~~l~l~-~~-~~~I~~nGa 65 (236)
T TIGR02471 1 LIITDLDNTLLGDDEGLASFVELLR-GSGDAVGFGIAT--GRSVESAKSRYAKLNLP-SP-DVLIARVGT 65 (236)
T ss_pred CeEEeccccccCCHHHHHHHHHHHH-hcCCCceEEEEe--CCCHHHHHHHHHhCCCC-CC-CEEEECCCc
Confidence 4789999999998877776667777 699999999999 88888888888888886 22 456666554
No 103
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=99.08 E-value=2.6e-09 Score=98.35 Aligned_cols=39 Identities=28% Similarity=0.380 Sum_probs=33.3
Q ss_pred HHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCcc
Q 016204 315 AMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATE 358 (393)
Q Consensus 315 ~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~ 358 (393)
.++++++ ++||||+ .+|+++|++||+++|.|.+|.++.-
T Consensus 180 ~l~~~~i----~I~IGDs-~~Di~aA~~AGi~~I~v~~G~~~~~ 218 (237)
T PRK11009 180 WLKKKNI----RIFYGDS-DNDITAAREAGARGIRILRAANSTY 218 (237)
T ss_pred HHHhcCC----eEEEcCC-HHHHHHHHHcCCcEEEEecCCCCCC
Confidence 4456665 9999999 7999999999999999999987543
No 104
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=99.07 E-value=1e-08 Score=96.57 Aligned_cols=72 Identities=18% Similarity=0.099 Sum_probs=56.2
Q ss_pred ccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHc---CCeEEEEcCCCCCcccCCCCccccCChhHHHHHHHh
Q 016204 303 WMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAA---GIQSVFIIGGIHATELGLDSYGEVADLSSVQTLVSK 379 (393)
Q Consensus 303 ~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~a---G~~~i~v~~G~~~~~~~~~~~~~i~~~~~l~~~l~~ 379 (393)
..+-.+...++.+++++|++.+++++|||+ .||+.|.+.+ +-.+|.|..+. ..|.+.++++.++..+|..
T Consensus 170 p~g~~Kg~al~~ll~~~~~~~~~v~~~GD~-~nD~~mf~~~~~~~g~~vavg~a~------~~A~~~l~~~~~v~~~L~~ 242 (266)
T PRK10187 170 PRGTNKGEAIAAFMQEAPFAGRTPVFVGDD-LTDEAGFAVVNRLGGISVKVGTGA------TQASWRLAGVPDVWSWLEM 242 (266)
T ss_pred CCCCCHHHHHHHHHHhcCCCCCeEEEEcCC-ccHHHHHHHHHhcCCeEEEECCCC------CcCeEeCCCHHHHHHHHHH
Confidence 334445889999999999999999999999 7999999988 34555664332 2366789999999988876
Q ss_pred cC
Q 016204 380 YD 381 (393)
Q Consensus 380 ~~ 381 (393)
..
T Consensus 243 l~ 244 (266)
T PRK10187 243 IT 244 (266)
T ss_pred HH
Confidence 53
No 105
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=99.05 E-value=1.6e-09 Score=93.96 Aligned_cols=44 Identities=23% Similarity=0.243 Sum_probs=38.9
Q ss_pred CCcEEEEecccccc--CCCcCCccHHHHHHHHHHCCC--eEEEEcCCC
Q 016204 29 RFKAWLLDQFGVLH--DGKKPYPGAISTLEMLATTGA--KMVVISNSS 72 (393)
Q Consensus 29 ~~k~i~~DlDGtL~--~g~~~ipga~eal~~L~~~G~--~v~~~TN~~ 72 (393)
.||+++||.|.||. +..++.|...++++++++.+. +++++|||.
T Consensus 40 Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsa 87 (168)
T PF09419_consen 40 GIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSA 87 (168)
T ss_pred CceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 79999999999994 566777999999999999876 599999984
No 106
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=99.03 E-value=2e-09 Score=98.27 Aligned_cols=50 Identities=14% Similarity=0.198 Sum_probs=46.9
Q ss_pred CCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCC
Q 016204 305 GKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIH 355 (393)
Q Consensus 305 gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~ 355 (393)
.||+|++|..+++++|++|++|++|||+ ..|+++|+++|+.+|++..+.+
T Consensus 151 ~KP~p~~y~~i~~~lgv~p~e~lfVgDs-~~Di~AA~~AG~~ti~v~r~g~ 200 (220)
T TIGR01691 151 LKTEAQSYVKIAGQLGSPPREILFLSDI-INELDAARKAGLHTGQLVRPGN 200 (220)
T ss_pred cCCCHHHHHHHHHHhCcChhHEEEEeCC-HHHHHHHHHcCCEEEEEECCCC
Confidence 5999999999999999999999999999 7999999999999999976543
No 107
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=99.03 E-value=1.4e-08 Score=91.60 Aligned_cols=48 Identities=21% Similarity=0.183 Sum_probs=42.0
Q ss_pred cccccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEE
Q 016204 300 EVRWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSV 348 (393)
Q Consensus 300 ~~~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i 348 (393)
+..+.+.+++..++.++++++++++++++|||+ .||+.|++.+|+..+
T Consensus 156 ev~p~~~~K~~~~~~~~~~~~~~~~~~~~~GD~-~nD~~~~~~~~~~va 203 (204)
T TIGR01484 156 EVLPAGVDKGSALQALLKELNGKRDEILAFGDS-GNDEEMFEVAGLAVA 203 (204)
T ss_pred EEecCCCChHHHHHHHHHHhCCCHHHEEEEcCC-HHHHHHHHHcCCceE
Confidence 334557777899999999999999999999999 799999999998753
No 108
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.02 E-value=2.5e-09 Score=97.83 Aligned_cols=64 Identities=20% Similarity=0.099 Sum_probs=47.3
Q ss_pred HHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCc-ccCCCCccccCChhHHHHHHHhc
Q 016204 314 SAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHAT-ELGLDSYGEVADLSSVQTLVSKY 380 (393)
Q Consensus 314 ~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~-~~~~~~~~~i~~~~~l~~~l~~~ 380 (393)
.++++++.++++|+||||+ .+|+.+|++||+..+ ....... +....+...++++.++...++..
T Consensus 151 ~~l~~~~~~~~~~i~iGDs-~~Di~aa~~Ag~~~a--~~~l~~~~~~~~~~~~~~~~f~ei~~~l~~~ 215 (219)
T PRK09552 151 SLIRKLSDTNDFHIVIGDS-ITDLEAAKQADKVFA--RDFLITKCEELGIPYTPFETFHDVQTELKHL 215 (219)
T ss_pred HHHHHhccCCCCEEEEeCC-HHHHHHHHHCCccee--HHHHHHHHHHcCCCccccCCHHHHHHHHHHH
Confidence 5778889999999999999 799999999999433 3211110 12244667789999998887654
No 109
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.00 E-value=3.1e-09 Score=108.23 Aligned_cols=45 Identities=22% Similarity=0.248 Sum_probs=39.7
Q ss_pred CCcEEEEeccccccCCC-------------cCCccHHHHHHHHHHCCCeEEEEcCCCC
Q 016204 29 RFKAWLLDQFGVLHDGK-------------KPYPGAISTLEMLATTGAKMVVISNSSR 73 (393)
Q Consensus 29 ~~k~i~~DlDGtL~~g~-------------~~ipga~eal~~L~~~G~~v~~~TN~~~ 73 (393)
+.|+++||+||||+... -++||+.++|++|++.|++++|+||.+.
T Consensus 167 ~~Kia~fD~DGTLi~t~sg~~~~~~~~d~~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~g 224 (526)
T TIGR01663 167 QEKIAGFDLDGTIIKTKSGKVFPKGPDDWQIIFPEIPEKLKELEADGFKICIFTNQGG 224 (526)
T ss_pred cCcEEEEECCCCccccCCCccCCCCHHHeeecccCHHHHHHHHHHCCCEEEEEECCcc
Confidence 67999999999999742 1579999999999999999999999764
No 110
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=98.99 E-value=2e-09 Score=96.63 Aligned_cols=47 Identities=19% Similarity=0.148 Sum_probs=39.6
Q ss_pred CcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCC
Q 016204 307 PDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGI 354 (393)
Q Consensus 307 P~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~ 354 (393)
+++..++.+++++|+++++++||||+ .+|+++|+++|+..+.-..+.
T Consensus 147 ~k~~~~~~~~~~~~~~~~~~i~iGDs-~~D~~~a~~ag~~~a~~~~~~ 193 (201)
T TIGR01491 147 NKGEAVERLKRELNPSLTETVAVGDS-KNDLPMFEVADISISLGDEGH 193 (201)
T ss_pred cHHHHHHHHHHHhCCCHHHEEEEcCC-HhHHHHHHhcCCeEEECCCcc
Confidence 34468889999999999999999999 799999999999776544443
No 111
>PLN02423 phosphomannomutase
Probab=98.97 E-value=1.3e-08 Score=94.75 Aligned_cols=52 Identities=17% Similarity=0.199 Sum_probs=41.8
Q ss_pred CCcEEE-EeccccccCCCcCC-ccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHH
Q 016204 29 RFKAWL-LDQFGVLHDGKKPY-PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLK 83 (393)
Q Consensus 29 ~~k~i~-~DlDGtL~~g~~~i-pga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~ 83 (393)
+++.++ ||+||||+++++.+ |.+.++|++|+++ ++++++| +|....+.+.+.
T Consensus 5 ~~~~i~~~D~DGTLl~~~~~i~~~~~~ai~~l~~~-i~fviaT--GR~~~~~~~~~~ 58 (245)
T PLN02423 5 KPGVIALFDVDGTLTAPRKEATPEMLEFMKELRKV-VTVGVVG--GSDLSKISEQLG 58 (245)
T ss_pred ccceEEEEeccCCCcCCCCcCCHHHHHHHHHHHhC-CEEEEEC--CcCHHHHHHHhc
Confidence 566555 99999999988766 6899999999977 9999999 665556655553
No 112
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=98.94 E-value=4.6e-09 Score=101.72 Aligned_cols=41 Identities=5% Similarity=-0.020 Sum_probs=38.0
Q ss_pred CCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCe
Q 016204 305 GKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQ 346 (393)
Q Consensus 305 gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~ 346 (393)
.||+|+.+..+++++|+.+++++||||+ ..|+.++++++-.
T Consensus 85 ~~pk~~~i~~~~~~l~i~~~~~vfidD~-~~d~~~~~~~lp~ 125 (320)
T TIGR01686 85 WGPKSESLRKIAKKLNLGTDSFLFIDDN-PAERANVKITLPV 125 (320)
T ss_pred cCchHHHHHHHHHHhCCCcCcEEEECCC-HHHHHHHHHHCCC
Confidence 5799999999999999999999999999 7999999997754
No 113
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=98.91 E-value=8.6e-08 Score=89.22 Aligned_cols=66 Identities=15% Similarity=0.044 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHc-------CCeEEEEcCCCCCcccCCCCccccCChhHHHHHHHh
Q 016204 309 KIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAA-------GIQSVFIIGGIHATELGLDSYGEVADLSSVQTLVSK 379 (393)
Q Consensus 309 p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~a-------G~~~i~v~~G~~~~~~~~~~~~~i~~~~~l~~~l~~ 379 (393)
...++.++++++.+++++++|||+ .||+.|++.+ |..++.|..|. ....+++++++++++..+|+.
T Consensus 169 g~a~~~~~~~~~~~~~~~i~iGD~-~~D~~~~~~~~~~~~~~g~~~v~v~~g~----~~~~A~~~~~~~~~v~~~L~~ 241 (244)
T TIGR00685 169 GEIVKRLLWHQPGSGISPVYLGDD-ITDEDAFRVVNNQWGNYGFYPVPIGSGS----KKTVAKFHLTGPQQVLEFLGL 241 (244)
T ss_pred HHHHHHHHHhcccCCCceEEEcCC-CcHHHHHHHHhcccCCCCeEEEEEecCC----cCCCceEeCCCHHHHHHHHHH
Confidence 679999999999999999999999 7999999999 77788887552 224578899999999988864
No 114
>PTZ00445 p36-lilke protein; Provisional
Probab=98.84 E-value=3.5e-08 Score=87.68 Aligned_cols=52 Identities=17% Similarity=0.251 Sum_probs=47.7
Q ss_pred ccccCCCcHHH--H--HHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCC
Q 016204 301 VRWMGKPDKII--Y--KSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGG 353 (393)
Q Consensus 301 ~~~~gKP~p~~--~--~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G 353 (393)
+...-||.|.+ | +.+++++|++|++|++|-|+ ...+++|++.|+.++.+.++
T Consensus 152 ~~gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~-~~NVeaA~~lGi~ai~f~~~ 207 (219)
T PTZ00445 152 PLGLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDD-MNNCKNALKEGYIALHVTGN 207 (219)
T ss_pred hhcccCCCccchHHHHHHHHHHcCCCHHHeEeecCC-HHHHHHHHHCCCEEEEcCCh
Confidence 34668999999 8 99999999999999999999 79999999999999999754
No 115
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=98.83 E-value=1.2e-08 Score=87.55 Aligned_cols=42 Identities=19% Similarity=0.169 Sum_probs=36.3
Q ss_pred ccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEE
Q 016204 303 WMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSV 348 (393)
Q Consensus 303 ~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i 348 (393)
..+||+ |.++++++|.+|++|+||||+ .+|+++++++|+..-
T Consensus 98 ~~~KP~---~~k~l~~l~~~p~~~i~i~Ds-~~~~~aa~~ngI~i~ 139 (148)
T smart00577 98 VFVKGK---YVKDLSLLGRDLSNVIIIDDS-PDSWPFHPENLIPIK 139 (148)
T ss_pred cccCCe---EeecHHHcCCChhcEEEEECC-HHHhhcCccCEEEec
Confidence 346775 888999999999999999999 799999999987653
No 116
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=98.78 E-value=2.8e-08 Score=86.17 Aligned_cols=46 Identities=28% Similarity=0.250 Sum_probs=35.9
Q ss_pred ccCCCcHHHHHHHHHHhCC----CCCcEEEEecCc----------hhhHHHHHHcCCeEE
Q 016204 303 WMGKPDKIIYKSAMAMVGV----DACDSIAVGDSL----------HHDIKGANAAGIQSV 348 (393)
Q Consensus 303 ~~gKP~p~~~~~~~~~lgi----~~~~~v~VGDsl----------~~Di~~a~~aG~~~i 348 (393)
...||.+-|++.++++++. +.++++||||+. ..|.+.|.++|++..
T Consensus 94 ~~RKP~~GM~~~~~~~~~~~~~id~~~Sf~VGDaagr~~~~~d~s~~D~~fA~N~gi~f~ 153 (159)
T PF08645_consen 94 PCRKPNPGMWEFALKDYNDGVEIDLANSFYVGDAAGRSKKKKDFSDSDRKFALNCGIKFY 153 (159)
T ss_dssp TTSTTSSHHHHHHCCCTSTT--S-CCC-EEEESSCHCTB-S--S--HHHHHHHHHT--EE
T ss_pred CCCCCchhHHHHHHHhccccccccccceEEEeccCCCCCcccccChhHHHHHHHcCCccc
Confidence 6799999999999999874 899999999941 478999999999753
No 117
>PLN02382 probable sucrose-phosphatase
Probab=98.77 E-value=2.6e-07 Score=92.28 Aligned_cols=49 Identities=14% Similarity=0.222 Sum_probs=41.9
Q ss_pred CCCcHHHHHHHHHHh---CCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCC
Q 016204 305 GKPDKIIYKSAMAMV---GVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGI 354 (393)
Q Consensus 305 gKP~p~~~~~~~~~l---gi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~ 354 (393)
+-.+...++++++++ |++++++++|||+ .||++|.+.+|..+|.+..+.
T Consensus 173 g~sKg~Al~~L~~~~~~~gi~~~~~iafGDs-~NDleMl~~ag~~gvam~NA~ 224 (413)
T PLN02382 173 GAGKGQALAYLLKKLKAEGKAPVNTLVCGDS-GNDAELFSVPDVYGVMVSNAQ 224 (413)
T ss_pred CCCHHHHHHHHHHHhhhcCCChhcEEEEeCC-HHHHHHHhcCCCCEEEEcCCc
Confidence 333478999999999 9999999999999 899999999998777775543
No 118
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=98.76 E-value=1.1e-08 Score=92.31 Aligned_cols=70 Identities=16% Similarity=0.016 Sum_probs=49.6
Q ss_pred CcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCcccCCCCcc-ccCChhHHHHHHHhc
Q 016204 307 PDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATELGLDSYG-EVADLSSVQTLVSKY 380 (393)
Q Consensus 307 P~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~~~~~~~~-~i~~~~~l~~~l~~~ 380 (393)
|.|.....++++++..+++|+||||+ .+|+++++++|+.. .+.. ........++. +++++.+|..++...
T Consensus 128 ~~p~~k~~~l~~~~~~~~~~v~iGDs-~~D~~~~~aa~~~v-~~~~--~~~~~~~~~~~~~~~~~~el~~~l~~~ 198 (205)
T PRK13582 128 RQPDGKRQAVKALKSLGYRVIAAGDS-YNDTTMLGEADAGI-LFRP--PANVIAEFPQFPAVHTYDELLAAIDKA 198 (205)
T ss_pred cccchHHHHHHHHHHhCCeEEEEeCC-HHHHHHHHhCCCCE-EECC--CHHHHHhCCcccccCCHHHHHHHHHHH
Confidence 34455667777777778999999999 79999999999854 3322 21111123444 799999998887754
No 119
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=98.61 E-value=6.6e-07 Score=79.23 Aligned_cols=40 Identities=15% Similarity=0.044 Sum_probs=32.4
Q ss_pred ccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCe
Q 016204 303 WMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQ 346 (393)
Q Consensus 303 ~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~ 346 (393)
..+.+++.+++.+.++. ++++++|||+ .+|+++|+++++.
T Consensus 145 ~~g~~K~~~~~~~~~~~---~~~~i~iGD~-~~D~~aa~~~d~~ 184 (188)
T TIGR01489 145 PCGCCKGKVIHKLSEPK---YQHIIYIGDG-VTDVCPAKLSDVV 184 (188)
T ss_pred CCCCCHHHHHHHHHhhc---CceEEEECCC-cchhchHhcCCcc
Confidence 34445588998888765 7899999999 7999999998654
No 120
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=98.59 E-value=6.9e-07 Score=83.28 Aligned_cols=46 Identities=20% Similarity=0.217 Sum_probs=37.5
Q ss_pred ccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcC
Q 016204 303 WMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIG 352 (393)
Q Consensus 303 ~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~ 352 (393)
..+| ...++++++++++++++++++||| .||+.|. ..+..+|.|..
T Consensus 163 ~a~K--~~Al~~L~~~~~~~~~~vl~aGDS-gND~~mL-~~~~~~vvV~N 208 (247)
T PF05116_consen 163 GASK--GAALRYLMERWGIPPEQVLVAGDS-GNDLEML-EGGDHGVVVGN 208 (247)
T ss_dssp T-SH--HHHHHHHHHHHT--GGGEEEEESS-GGGHHHH-CCSSEEEE-TT
T ss_pred CCCH--HHHHHHHHHHhCCCHHHEEEEeCC-CCcHHHH-cCcCCEEEEcC
Confidence 3455 779999999999999999999999 7999999 77888888876
No 121
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=98.59 E-value=1.4e-07 Score=88.37 Aligned_cols=70 Identities=19% Similarity=0.276 Sum_probs=57.9
Q ss_pred CCcEEEEeccccccCCCcC----CccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCcccceEEeCchh
Q 016204 29 RFKAWLLDQFGVLHDGKKP----YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (393)
Q Consensus 29 ~~k~i~~DlDGtL~~g~~~----ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~~~~~iits~~~ 101 (393)
-++.|+||+||||+++.+. -||+.|+|++|+++|++++++||+++.. ..+.|+.+|++..- +.|++++..
T Consensus 125 ~~kvIvFDLDgTLi~~~~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~--v~~~L~~lGLd~YF-dvIIs~Gdv 198 (301)
T TIGR01684 125 PPHVVVFDLDSTLITDEEPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDH--VVESMRKVKLDRYF-DIIISGGHK 198 (301)
T ss_pred cceEEEEecCCCCcCCCCccccCCHHHHHHHHHHHHCCCEEEEEECCCHHH--HHHHHHHcCCCccc-CEEEECCcc
Confidence 4689999999999998875 3899999999999999999999776543 34678889997653 777777665
No 122
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.54 E-value=9e-07 Score=80.46 Aligned_cols=42 Identities=24% Similarity=0.332 Sum_probs=37.7
Q ss_pred CcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEE
Q 016204 307 PDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVF 349 (393)
Q Consensus 307 P~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~ 349 (393)
-+...+..+++++|+++++++++||+ .||+.|.+.+|...+.
T Consensus 144 ~K~~~l~~~~~~~g~~~~~~~a~gDs-~nDlpml~~ag~~ia~ 185 (212)
T COG0560 144 GKAKALRELAAELGIPLEETVAYGDS-ANDLPMLEAAGLPIAV 185 (212)
T ss_pred hHHHHHHHHHHHcCCCHHHeEEEcCc-hhhHHHHHhCCCCeEe
Confidence 34778999999999999999999999 7999999999998654
No 123
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=98.54 E-value=6.9e-07 Score=79.21 Aligned_cols=55 Identities=22% Similarity=0.376 Sum_probs=50.0
Q ss_pred ccccCCCcHHHHHHHHHHhCCC-CCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCC
Q 016204 301 VRWMGKPDKIIYKSAMAMVGVD-ACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHA 356 (393)
Q Consensus 301 ~~~~gKP~p~~~~~~~~~lgi~-~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~ 356 (393)
...+.||.+..|+.+++..|++ |.++++|.|| .+.|+.|++.|+.+++|......
T Consensus 155 ~~~vcKP~~~afE~a~k~agi~~p~~t~FfDDS-~~NI~~ak~vGl~tvlv~~~~~~ 210 (244)
T KOG3109|consen 155 KTVVCKPSEEAFEKAMKVAGIDSPRNTYFFDDS-ERNIQTAKEVGLKTVLVGREHKI 210 (244)
T ss_pred CceeecCCHHHHHHHHHHhCCCCcCceEEEcCc-hhhHHHHHhccceeEEEEeeecc
Confidence 4567899999999999999997 9999999999 89999999999999999865543
No 124
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=98.51 E-value=7.6e-07 Score=80.04 Aligned_cols=46 Identities=26% Similarity=0.203 Sum_probs=40.5
Q ss_pred ccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEE
Q 016204 303 WMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVF 349 (393)
Q Consensus 303 ~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~ 349 (393)
..++++...++.++++.++++++|+++||+ .+|+++++.+|...+.
T Consensus 151 ~~g~~K~~~l~~~~~~~~~~~~~~~~~gDs-~~D~~~~~~a~~~~~v 196 (202)
T TIGR01490 151 CKGEGKVHALAELLAEEQIDLKDSYAYGDS-ISDLPLLSLVGHPYVV 196 (202)
T ss_pred CCChHHHHHHHHHHHHcCCCHHHcEeeeCC-cccHHHHHhCCCcEEe
Confidence 346777889999999999999999999999 7999999999987653
No 125
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=98.50 E-value=4.8e-06 Score=89.43 Aligned_cols=66 Identities=12% Similarity=0.042 Sum_probs=50.9
Q ss_pred cHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCcccCCCCccccCChhHHHHHHHhc
Q 016204 308 DKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATELGLDSYGEVADLSSVQTLVSKY 380 (393)
Q Consensus 308 ~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~~~~~~~~~i~~~~~l~~~l~~~ 380 (393)
|...++.+++ +++++.+++|||+ .||..|.+.++...+.|.-|... ..|.+++++.+++.++|+..
T Consensus 658 KG~al~~ll~--~~~~d~vl~~GD~-~nDe~Mf~~~~~~~~~v~vG~~~----s~A~~~l~~~~eV~~~L~~l 723 (726)
T PRK14501 658 KGRAVRRLLE--AGPYDFVLAIGDD-TTDEDMFRALPETAITVKVGPGE----SRARYRLPSQREVRELLRRL 723 (726)
T ss_pred HHHHHHHHHh--cCCCCEEEEECCC-CChHHHHHhcccCceEEEECCCC----CcceEeCCCHHHHHHHHHHH
Confidence 3778888888 7788999999999 79999999986444455545422 35778899999998888753
No 126
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=98.44 E-value=2.2e-06 Score=75.25 Aligned_cols=39 Identities=26% Similarity=0.245 Sum_probs=33.5
Q ss_pred cCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHc
Q 016204 304 MGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAA 343 (393)
Q Consensus 304 ~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~a 343 (393)
.+..++..+...++.++++++++++|||+ .+|+.+++.|
T Consensus 139 ~~~~K~~~l~~~~~~~~~~~~~~~~iGDs-~~D~~~~~~a 177 (177)
T TIGR01488 139 EGECKGKVLKELLEESKITLKKIIAVGDS-VNDLPMLKLA 177 (177)
T ss_pred CcchHHHHHHHHHHHhCCCHHHEEEEeCC-HHHHHHHhcC
Confidence 34555779999999999999999999999 7999999864
No 127
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=98.40 E-value=1.1e-06 Score=72.72 Aligned_cols=41 Identities=20% Similarity=0.252 Sum_probs=35.3
Q ss_pred cEEEEeccccccCCC-------cCCccHHHHHHHHHHCCCeEEEEcCC
Q 016204 31 KAWLLDQFGVLHDGK-------KPYPGAISTLEMLATTGAKMVVISNS 71 (393)
Q Consensus 31 k~i~~DlDGtL~~g~-------~~ipga~eal~~L~~~G~~v~~~TN~ 71 (393)
|+|+||+||||.+.+ .+.++++++|++|+++|+.++++|..
T Consensus 2 K~i~~DiDGTL~~~~~~~y~~~~~~~~~ie~L~~l~~~G~~IiiaTGR 49 (126)
T TIGR01689 2 KRLVMDLDNTITLTENGDYANVAPILAVIEKLRHYKALGFEIVISSSR 49 (126)
T ss_pred CEEEEeCCCCcccCCCCcccccccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 699999999999743 24578999999999999999999943
No 128
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=98.39 E-value=6.4e-06 Score=74.42 Aligned_cols=69 Identities=20% Similarity=0.092 Sum_probs=46.4
Q ss_pred CCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCcccCCCCccccCChhHHHHHHHhc
Q 016204 306 KPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATELGLDSYGEVADLSSVQTLVSKY 380 (393)
Q Consensus 306 KP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~~~~~~~~~i~~~~~l~~~l~~~ 380 (393)
||.+......+++.+. ++++|||+ .||+.+++.||...+......-..+ +..-.+..++.+|.+.+...
T Consensus 130 ~~~K~~~l~~l~~~~~---~~v~vGDs-~nDl~ml~~Ag~~ia~~ak~~~~~~--~~~~~~~~~~~~~~~~~~~~ 198 (203)
T TIGR02137 130 KDPKRQSVIAFKSLYY---RVIAAGDS-YNDTTMLSEAHAGILFHAPENVIRE--FPQFPAVHTYEDLKREFLKA 198 (203)
T ss_pred cchHHHHHHHHHhhCC---CEEEEeCC-HHHHHHHHhCCCCEEecCCHHHHHh--CCCCCcccCHHHHHHHHHHH
Confidence 4444444444466653 79999999 7999999999999876654322211 22234567888888877654
No 129
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=98.38 E-value=6.5e-07 Score=81.59 Aligned_cols=76 Identities=16% Similarity=0.086 Sum_probs=54.4
Q ss_pred cccCCCcHHHH----------HHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCC-cccCCCCccccCCh
Q 016204 302 RWMGKPDKIIY----------KSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHA-TELGLDSYGEVADL 370 (393)
Q Consensus 302 ~~~gKP~p~~~----------~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~-~~~~~~~~~~i~~~ 370 (393)
....||+|..+ ..++++++..+++++||||+ .+|+.+|+.||+ +.++..-.. .+....+...++++
T Consensus 125 ~~~~~p~~~~~~~~~~cg~~K~~~l~~~~~~~~~~i~iGDg-~~D~~~a~~Ad~--~~ar~~l~~~~~~~~~~~~~~~~f 201 (214)
T TIGR03333 125 IHIDWPHPCDGTCQNQCGCCKPSLIRKLSEPNDYHIVIGDS-VTDVEAAKQSDL--CFARDYLLNECEELGLNHAPFQDF 201 (214)
T ss_pred eEEeCCCCCccccccCCCCCHHHHHHHHhhcCCcEEEEeCC-HHHHHHHHhCCe--eEehHHHHHHHHHcCCCccCcCCH
Confidence 45567887775 36778888888999999999 799999999998 444431101 11223356668899
Q ss_pred hHHHHHHHhc
Q 016204 371 SSVQTLVSKY 380 (393)
Q Consensus 371 ~~l~~~l~~~ 380 (393)
.++.+.|...
T Consensus 202 ~di~~~l~~~ 211 (214)
T TIGR03333 202 YDVRKELENV 211 (214)
T ss_pred HHHHHHHHHH
Confidence 9998888653
No 130
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=98.36 E-value=9.8e-07 Score=82.76 Aligned_cols=74 Identities=20% Similarity=0.271 Sum_probs=59.9
Q ss_pred CCcEEEEeccccccCCCcCC----ccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCcccceEEeCchhHHH
Q 016204 29 RFKAWLLDQFGVLHDGKKPY----PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQ 104 (393)
Q Consensus 29 ~~k~i~~DlDGtL~~g~~~i----pga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~~~~~iits~~~~~~ 104 (393)
-++.++||+||||++..+.+ |++.++|++|+++|++++++||+++.. ....|..+|++..- +.|++++....+
T Consensus 127 ~~~~i~~D~D~TL~~~~~~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~--v~~~Le~lgL~~yF-DvII~~g~i~~k 203 (303)
T PHA03398 127 IPHVIVFDLDSTLITDEEPVRIRDPFVYDSLDELKERGCVLVLWSYGNREH--VVHSLKETKLEGYF-DIIICGGRKAGE 203 (303)
T ss_pred eccEEEEecCCCccCCCCccccCChhHHHHHHHHHHCCCEEEEEcCCChHH--HHHHHHHcCCCccc-cEEEECCCcccc
Confidence 46899999999999987764 899999999999999999999876553 34567778887553 778888776666
Q ss_pred H
Q 016204 105 Y 105 (393)
Q Consensus 105 ~ 105 (393)
+
T Consensus 204 ~ 204 (303)
T PHA03398 204 Y 204 (303)
T ss_pred c
Confidence 5
No 131
>PRK11587 putative phosphatase; Provisional
Probab=98.33 E-value=1.5e-06 Score=79.41 Aligned_cols=49 Identities=22% Similarity=0.325 Sum_probs=36.0
Q ss_pred cCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCcccceEEeC
Q 016204 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITS 98 (393)
Q Consensus 46 ~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~~~~~iits 98 (393)
.++||+.++|+.|+++|+++.++||+++.. ....+...|+.. ++.++++
T Consensus 83 ~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~--~~~~l~~~~l~~--~~~i~~~ 131 (218)
T PRK11587 83 TALPGAIALLNHLNKLGIPWAIVTSGSVPV--ASARHKAAGLPA--PEVFVTA 131 (218)
T ss_pred eeCcCHHHHHHHHHHcCCcEEEEcCCCchH--HHHHHHhcCCCC--ccEEEEH
Confidence 357999999999999999999999987543 234455667742 2556654
No 132
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=98.31 E-value=1.4e-06 Score=75.42 Aligned_cols=69 Identities=14% Similarity=0.154 Sum_probs=47.2
Q ss_pred EEEEeccccccCCC------------cCCccHHHHHHHHHHCCCeEEEEcCCCCCch-HHHHHHHh---CCCCCcccceE
Q 016204 32 AWLLDQFGVLHDGK------------KPYPGAISTLEMLATTGAKMVVISNSSRRAS-TTIDKLKS---LGFDPSLFAGA 95 (393)
Q Consensus 32 ~i~~DlDGtL~~g~------------~~ipga~eal~~L~~~G~~v~~~TN~~~~~~-~~~~~l~~---lG~~~~~~~~i 95 (393)
.|++|+||||++.+ ...|++.+++++|+++|++++++|+.+.... ...+.|.. .|..... ..+
T Consensus 1 iVisDIDGTL~~sd~~~~~~~~~~~~~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp~-g~l 79 (157)
T smart00775 1 IVISDIDGTITKSDVLGHVVPIIGKDWTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQIKQDGHNLPH-GPV 79 (157)
T ss_pred CEEEecCCCCcccccccccccccccCcCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHhhhccccCCC-ceE
Confidence 48999999999876 5569999999999999999999994432222 22344444 3433333 455
Q ss_pred EeCchh
Q 016204 96 ITSGEL 101 (393)
Q Consensus 96 its~~~ 101 (393)
++++..
T Consensus 80 i~~~g~ 85 (157)
T smart00775 80 LLSPDR 85 (157)
T ss_pred EEcCCc
Confidence 655444
No 133
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=98.28 E-value=1.8e-06 Score=77.88 Aligned_cols=39 Identities=31% Similarity=0.478 Sum_probs=37.4
Q ss_pred CCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcC
Q 016204 305 GKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAG 344 (393)
Q Consensus 305 gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG 344 (393)
+||.+.+|..+++.+++++++|+||||+ .||+.|+++||
T Consensus 177 ~kP~~k~~~~~i~~l~~~~~~v~~vGDg-~nD~~al~~Ag 215 (215)
T PF00702_consen 177 GKPEPKIFLRIIKELQVKPGEVAMVGDG-VNDAPALKAAG 215 (215)
T ss_dssp TTTHHHHHHHHHHHHTCTGGGEEEEESS-GGHHHHHHHSS
T ss_pred ccccchhHHHHHHHHhcCCCEEEEEccC-HHHHHHHHhCc
Confidence 8999999999999999999999999999 59999999997
No 134
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=98.28 E-value=3.2e-05 Score=83.74 Aligned_cols=75 Identities=12% Similarity=0.078 Sum_probs=54.0
Q ss_pred HHHHHHHHH---HhCCCCCcEEEEecCchhhHHHHHHcCCe-----------EEEEcCCCCCcccCCCCccccCChhHHH
Q 016204 309 KIIYKSAMA---MVGVDACDSIAVGDSLHHDIKGANAAGIQ-----------SVFIIGGIHATELGLDSYGEVADLSSVQ 374 (393)
Q Consensus 309 p~~~~~~~~---~lgi~~~~~v~VGDsl~~Di~~a~~aG~~-----------~i~v~~G~~~~~~~~~~~~~i~~~~~l~ 374 (393)
...++.+++ .+|++++.+++|||+ .||..|.+.++-. .+.|.-|.. -..|.+.+++..++.
T Consensus 764 G~Al~~Ll~~~~~~g~~~d~vl~~GDD-~nDedMF~~~~~~~~g~~~~~~~~~~~v~VG~~----~S~A~y~L~d~~eV~ 838 (854)
T PLN02205 764 GLVAKRLLSIMQERGMLPDFVLCIGDD-RSDEDMFEVITSSMAGPSIAPRAEVFACTVGQK----PSKAKYYLDDTAEIV 838 (854)
T ss_pred HHHHHHHHHHHHhcCCCcccEEEEcCC-ccHHHHHHHhhhhccCCcccccccceeEEECCC----CccCeEecCCHHHHH
Confidence 668888764 468999999999999 7999999988621 233333422 135668899999999
Q ss_pred HHHHhcCCCCcEEe
Q 016204 375 TLVSKYDAYPSYVL 388 (393)
Q Consensus 375 ~~l~~~~~~p~~~~ 388 (393)
++|+.....++.+.
T Consensus 839 ~lL~~L~~~~~~~~ 852 (854)
T PLN02205 839 RLMQGLASVSEQIL 852 (854)
T ss_pred HHHHHHHhcchhhc
Confidence 99987655554443
No 135
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=98.27 E-value=3e-06 Score=79.42 Aligned_cols=70 Identities=27% Similarity=0.370 Sum_probs=56.7
Q ss_pred CCcEEEEeccccccC---------------------------CCcCCccHHHHHHHHHHCCCeEEEEcCCCCCc-hHHHH
Q 016204 29 RFKAWLLDQFGVLHD---------------------------GKKPYPGAISTLEMLATTGAKMVVISNSSRRA-STTID 80 (393)
Q Consensus 29 ~~k~i~~DlDGtL~~---------------------------g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~-~~~~~ 80 (393)
+..+|+||||+|+++ ...++||+.++|+.|+++|++++|+||++... .....
T Consensus 74 kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~~wv~~~~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~ 153 (266)
T TIGR01533 74 KKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWDKWVQAAQAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLK 153 (266)
T ss_pred CCCEEEEeCccccccChHHHHHHhcCCCcCCHHHHHHHHHcCCCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHH
Confidence 567999999999974 22568999999999999999999999987655 46778
Q ss_pred HHHhCCCCCcccceEEeC
Q 016204 81 KLKSLGFDPSLFAGAITS 98 (393)
Q Consensus 81 ~l~~lG~~~~~~~~iits 98 (393)
.|..+|++....+.++.-
T Consensus 154 ~Lkk~Gi~~~~~d~lllr 171 (266)
T TIGR01533 154 NLKRFGFPQADEEHLLLK 171 (266)
T ss_pred HHHHcCcCCCCcceEEeC
Confidence 888999975433666654
No 136
>PLN02580 trehalose-phosphatase
Probab=98.25 E-value=9e-05 Score=72.77 Aligned_cols=66 Identities=17% Similarity=0.257 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhCCCCCc---EEEEecCchhhHHHHHHcC----CeEEEEcCCCCCcccCCCCccccCChhHHHHHHHh
Q 016204 309 KIIYKSAMAMVGVDACD---SIAVGDSLHHDIKGANAAG----IQSVFIIGGIHATELGLDSYGEVADLSSVQTLVSK 379 (393)
Q Consensus 309 p~~~~~~~~~lgi~~~~---~v~VGDsl~~Di~~a~~aG----~~~i~v~~G~~~~~~~~~~~~~i~~~~~l~~~l~~ 379 (393)
...++.++++++++..+ .++|||+ .||..|.+... -.+|.|..+. .+ ..|.+.+++..++..+|+.
T Consensus 303 G~Av~~Ll~~~g~~~~d~~~pi~iGDD-~TDedmF~~L~~~~~G~~I~Vgn~~--~~--t~A~y~L~dp~eV~~~L~~ 375 (384)
T PLN02580 303 GKAVEFLLESLGLSNCDDVLPIYIGDD-RTDEDAFKVLREGNRGYGILVSSVP--KE--SNAFYSLRDPSEVMEFLKS 375 (384)
T ss_pred HHHHHHHHHhcCCCcccceeEEEECCC-chHHHHHHhhhccCCceEEEEecCC--CC--ccceEEcCCHHHHHHHHHH
Confidence 67999999999987653 3899999 79999998631 2345555432 22 3567889999999998875
No 137
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=98.25 E-value=2.8e-06 Score=77.23 Aligned_cols=51 Identities=27% Similarity=0.315 Sum_probs=39.5
Q ss_pred cCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCcccceEEeCc
Q 016204 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSG 99 (393)
Q Consensus 46 ~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~~~~~iits~ 99 (393)
.++||+.++|+.|+++|++++++||+.+ ..+...+..+|+.... +.++++.
T Consensus 82 ~~~~g~~~~l~~L~~~g~~~~i~S~~~~--~~~~~~l~~~gl~~~f-~~i~~~~ 132 (214)
T PRK13288 82 TEYETVYETLKTLKKQGYKLGIVTTKMR--DTVEMGLKLTGLDEFF-DVVITLD 132 (214)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCCH--HHHHHHHHHcCChhce-eEEEecC
Confidence 3579999999999999999999998764 3444566778887553 7777754
No 138
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=98.24 E-value=1.1e-05 Score=70.25 Aligned_cols=51 Identities=14% Similarity=0.271 Sum_probs=37.7
Q ss_pred CcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCcc
Q 016204 307 PDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATE 358 (393)
Q Consensus 307 P~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~ 358 (393)
++...|+.+.++.|++.+++++|-|. ...++..+..|+.+++|..|.+...
T Consensus 108 sK~~Hf~~i~~~tgI~y~eMlFFDDe-~~N~~~v~~lGV~~v~v~~Glt~~~ 158 (169)
T PF12689_consen 108 SKTTHFRRIHRKTGIPYEEMLFFDDE-SRNIEVVSKLGVTCVLVPDGLTWDE 158 (169)
T ss_dssp -HHHHHHHHHHHH---GGGEEEEES--HHHHHHHHTTT-EEEE-SSS--HHH
T ss_pred chHHHHHHHHHhcCCChhHEEEecCc-hhcceeeEecCcEEEEeCCCCCHHH
Confidence 34779999999999999999999999 7999999999999999999876543
No 139
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=98.21 E-value=3.6e-06 Score=78.51 Aligned_cols=52 Identities=19% Similarity=0.286 Sum_probs=40.1
Q ss_pred CCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCcccceEEeCchh
Q 016204 47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (393)
Q Consensus 47 ~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~~~~~iits~~~ 101 (393)
++||+.++|+.|+++|++++++||+++.. ....|+.+|+...- +.++++...
T Consensus 109 l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~--~~~~l~~~gl~~~F-d~iv~~~~~ 160 (248)
T PLN02770 109 PLNGLYKLKKWIEDRGLKRAAVTNAPREN--AELMISLLGLSDFF-QAVIIGSEC 160 (248)
T ss_pred cCccHHHHHHHHHHcCCeEEEEeCCCHHH--HHHHHHHcCChhhC-cEEEecCcC
Confidence 47899999999999999999999876443 34456677886553 788887643
No 140
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=98.19 E-value=4e-07 Score=76.62 Aligned_cols=108 Identities=12% Similarity=0.162 Sum_probs=69.4
Q ss_pred hcccEEEEecCCccccCHHHHHHHH-HHHhcCCCCChHHHHHHHhCCCchHHHHHHHhhhhcccc--------ccccccc
Q 016204 231 RMTDLILFDLKNFNLVSVDIIYSSH-KLLSRNFSISKNFTFRNFIGLPFVYECVLIILGTLASKF--------EKLGGEV 301 (393)
Q Consensus 231 ~M~k~iiFD~DGTL~ds~~~~~~~~-~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~--------~~~~~~~ 301 (393)
.|+|.+|||.||||+|..-.+.+.. .+..++......-......|.. .++++... ..++...
T Consensus 6 ~~IkLli~DVDGvLTDG~ly~~~~Gee~KaFnv~DG~Gik~l~~~Gi~---------vAIITGr~s~ive~Ra~~LGI~~ 76 (170)
T COG1778 6 KNIKLLILDVDGVLTDGKLYYDENGEEIKAFNVRDGHGIKLLLKSGIK---------VAIITGRDSPIVEKRAKDLGIKH 76 (170)
T ss_pred hhceEEEEeccceeecCeEEEcCCCceeeeeeccCcHHHHHHHHcCCe---------EEEEeCCCCHHHHHHHHHcCCce
Confidence 4689999999999999533322222 3333333333333333333332 12222222 1234444
Q ss_pred cccCC-CcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEE
Q 016204 302 RWMGK-PDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSV 348 (393)
Q Consensus 302 ~~~gK-P~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i 348 (393)
..-|. -+...|+.+++++++.+++|.+|||. .+|+...++.|+.++
T Consensus 77 ~~qG~~dK~~a~~~L~~~~~l~~e~~ayiGDD-~~Dlpvm~~vGls~a 123 (170)
T COG1778 77 LYQGISDKLAAFEELLKKLNLDPEEVAYVGDD-LVDLPVMEKVGLSVA 123 (170)
T ss_pred eeechHhHHHHHHHHHHHhCCCHHHhhhhcCc-cccHHHHHHcCCccc
Confidence 44443 34689999999999999999999999 599999999999764
No 141
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=98.12 E-value=2.3e-05 Score=75.91 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=37.9
Q ss_pred HHHHHHHHhCCCCCcEEEEecCchhhHHHHH-HcCCeEEEEcC
Q 016204 311 IYKSAMAMVGVDACDSIAVGDSLHHDIKGAN-AAGIQSVFIIG 352 (393)
Q Consensus 311 ~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~-~aG~~~i~v~~ 352 (393)
.+..+.+.+|+++++++||||++.+||..++ .+||.|++|.-
T Consensus 282 n~~~~~~~l~~~~~~vlYvGD~i~~Di~~~kk~~Gw~TvlI~p 324 (343)
T TIGR02244 282 SLKQFHELLKWRGKEVLYFGDHIYGDLLRSKKKRGWRTAAIIP 324 (343)
T ss_pred CHHHHHHHHCCCCCcEEEECCcchHHHHhhHHhcCcEEEEEch
Confidence 4566778889999999999999999999998 99999999975
No 142
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=98.11 E-value=5e-06 Score=76.21 Aligned_cols=53 Identities=34% Similarity=0.500 Sum_probs=38.9
Q ss_pred cCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCcccceEEeCchh
Q 016204 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (393)
Q Consensus 46 ~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~~~~~iits~~~ 101 (393)
.++||+.++|+.|+++|++++++||+.+.. ....|..+|+.... +.++++...
T Consensus 86 ~~~pGv~~~l~~L~~~~i~~avaS~s~~~~--~~~~L~~~gl~~~f-~~~v~~~dv 138 (221)
T COG0637 86 KPIPGVVELLEQLKARGIPLAVASSSPRRA--AERVLARLGLLDYF-DVIVTADDV 138 (221)
T ss_pred CCCccHHHHHHHHHhcCCcEEEecCChHHH--HHHHHHHccChhhc-chhccHHHH
Confidence 578999999999999999999999765443 33345567776553 666665443
No 143
>PLN03017 trehalose-phosphatase
Probab=98.06 E-value=0.00034 Score=68.24 Aligned_cols=68 Identities=13% Similarity=0.140 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhCCCC---CcEEEEecCchhhHHHHHHcC-C-eEEEEcCCCCCcccCCCCccccCChhHHHHHHHh
Q 016204 309 KIIYKSAMAMVGVDA---CDSIAVGDSLHHDIKGANAAG-I-QSVFIIGGIHATELGLDSYGEVADLSSVQTLVSK 379 (393)
Q Consensus 309 p~~~~~~~~~lgi~~---~~~v~VGDsl~~Di~~a~~aG-~-~~i~v~~G~~~~~~~~~~~~~i~~~~~l~~~l~~ 379 (393)
...++.+++.++... .-.+|+||. .+|-.+.+... . ..+.|.-|....+ ..|.+.++++.++..+|..
T Consensus 285 G~Av~~LL~~l~~~~~~~~~pvyiGDD-~TDEDaF~~L~~~~~G~gI~VG~~~k~--T~A~y~L~dp~eV~~fL~~ 357 (366)
T PLN03017 285 GKALEFLLESLGFGNTNNVFPVYIGDD-RTDEDAFKMLRDRGEGFGILVSKFPKD--TDASYSLQDPSEVMDFLAR 357 (366)
T ss_pred HHHHHHHHHhcccccCCCceEEEeCCC-CccHHHHHHHhhcCCceEEEECCCCCC--CcceEeCCCHHHHHHHHHH
Confidence 568999999988753 248999999 79999888663 1 1233333322212 3577889999999998875
No 144
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=98.04 E-value=1.1e-05 Score=79.28 Aligned_cols=86 Identities=14% Similarity=0.234 Sum_probs=65.5
Q ss_pred CCchhhhhccHHHHhhhcCCcEEEEeccccccC-----------------------------------------------
Q 016204 11 DPHLFQTLNGLRHIAETRRFKAWLLDQFGVLHD----------------------------------------------- 43 (393)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~k~i~~DlDGtL~~----------------------------------------------- 43 (393)
++.+-+.+..++.+.. ..++|+||+||||.+
T Consensus 114 ~~~~~~~~~~~~~~~~--~~~~VIFDlDGTLIDS~~~i~~~a~~~l~~e~G~~~~~~e~~~~~~G~~~~~~l~~ll~~~~ 191 (381)
T PLN02575 114 NPSLHNPLLRQERMGC--GWLGAIFEWEGVIIEDNPDLENQAWLTLAQEEGKSPPPAFILRRVEGMKNEQAISEVLCWSR 191 (381)
T ss_pred cccccCHHHHHHhccC--CCCEEEEcCcCcceeCHHHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCHHHHHHHHhhccC
Confidence 4455667777777776 899999999999986
Q ss_pred ----------------------CCcCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCcccceEEeCchh
Q 016204 44 ----------------------GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (393)
Q Consensus 44 ----------------------g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~~~~~iits~~~ 101 (393)
...++||+.++|+.|+++|+++.++||+++.. +...+..+|+.... +.|+++...
T Consensus 192 ~~~~~e~l~~~~~~~y~~~~~~~~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~--~~~~L~~lgL~~yF-d~Iv~sddv 268 (381)
T PLN02575 192 DPAELRRMATRKEEIYQALQGGIYRLRTGSQEFVNVLMNYKIPMALVSTRPRKT--LENAIGSIGIRGFF-SVIVAAEDV 268 (381)
T ss_pred CHHHHHHHHHHHHHHHHHHhccCCCcCcCHHHHHHHHHHCCCeEEEEeCCCHHH--HHHHHHHcCCHHHc-eEEEecCcC
Confidence 11357999999999999999999999876433 33446667886554 788877543
No 145
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=98.02 E-value=1.3e-05 Score=75.62 Aligned_cols=50 Identities=16% Similarity=0.251 Sum_probs=33.8
Q ss_pred CCccHHHHHHHHHHCCCeEEEEcCCCCCc-hHHHHHHHhCCCCCcccceEEeCc
Q 016204 47 PYPGAISTLEMLATTGAKMVVISNSSRRA-STTIDKLKSLGFDPSLFAGAITSG 99 (393)
Q Consensus 47 ~ipga~eal~~L~~~G~~v~~~TN~~~~~-~~~~~~l~~lG~~~~~~~~iits~ 99 (393)
++||+.++|+.|+++|+++.++||+++.. ....+ .+|+....++.|+++.
T Consensus 102 ~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~---~~~l~~~~~d~i~~~~ 152 (267)
T PRK13478 102 PIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVP---LAAAQGYRPDHVVTTD 152 (267)
T ss_pred CCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHH---HHhhcCCCceEEEcCC
Confidence 46899999999999999999999876543 23333 3343222125666664
No 146
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=98.02 E-value=1.5e-05 Score=73.41 Aligned_cols=50 Identities=20% Similarity=0.254 Sum_probs=36.8
Q ss_pred cCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCcccceEEeC
Q 016204 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITS 98 (393)
Q Consensus 46 ~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~~~~~iits 98 (393)
.++||+.++|++|+++|+++.++||+++.. ....+..+|+.... +.++++
T Consensus 95 ~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~--~~~~l~~~~l~~~f-~~i~~~ 144 (229)
T PRK13226 95 QLFDGVEGMLQRLECAGCVWGIVTNKPEYL--ARLILPQLGWEQRC-AVLIGG 144 (229)
T ss_pred eeCCCHHHHHHHHHHCCCeEEEECCCCHHH--HHHHHHHcCchhcc-cEEEec
Confidence 357999999999999999999999986533 23345667775443 555554
No 147
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.02 E-value=2.4e-05 Score=68.29 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=27.6
Q ss_pred CCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHH
Q 016204 305 GKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANA 342 (393)
Q Consensus 305 gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~ 342 (393)
+| ++.+..+.+ +.+-+.++||||. .||+++..-
T Consensus 159 gK--a~~i~~lrk--~~~~~~~~mvGDG-atDlea~~p 191 (227)
T KOG1615|consen 159 GK--AEVIALLRK--NYNYKTIVMVGDG-ATDLEAMPP 191 (227)
T ss_pred cc--HHHHHHHHh--CCChheeEEecCC-ccccccCCc
Confidence 56 668888877 7778999999999 899998765
No 148
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=98.01 E-value=1.8e-05 Score=72.37 Aligned_cols=49 Identities=24% Similarity=0.385 Sum_probs=37.3
Q ss_pred cCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCcccceEEe
Q 016204 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAIT 97 (393)
Q Consensus 46 ~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~~~~~iit 97 (393)
.++||+.++|..|+++|+++.++||+++.. ....|+.+|+.... +.+++
T Consensus 89 ~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~--~~~~l~~~gl~~~F-~~i~g 137 (220)
T COG0546 89 RLFPGVKELLAALKSAGYKLGIVTNKPERE--LDILLKALGLADYF-DVIVG 137 (220)
T ss_pred ccCCCHHHHHHHHHhCCCeEEEEeCCcHHH--HHHHHHHhCCcccc-ceEEc
Confidence 468999999999999999999999876554 22334457776554 66666
No 149
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=97.99 E-value=2.1e-05 Score=71.87 Aligned_cols=51 Identities=16% Similarity=0.173 Sum_probs=38.6
Q ss_pred cCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCcccceEEeCc
Q 016204 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSG 99 (393)
Q Consensus 46 ~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~~~~~iits~ 99 (393)
.++||+.++|+.|+++|++++++||+++.. ....++.+|+.... +.++++.
T Consensus 92 ~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~--~~~~l~~~~l~~~f-~~~~~~~ 142 (222)
T PRK10826 92 PLLPGVREALALCKAQGLKIGLASASPLHM--LEAVLTMFDLRDYF-DALASAE 142 (222)
T ss_pred CCCCCHHHHHHHHHHCCCeEEEEeCCcHHH--HHHHHHhCcchhcc-cEEEEcc
Confidence 467999999999999999999999876543 33345567776554 7777764
No 150
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=97.99 E-value=2.4e-05 Score=72.25 Aligned_cols=66 Identities=12% Similarity=0.093 Sum_probs=48.0
Q ss_pred EEEEeccccccCCC---------------------------------cCCcc--HHHHHHHHHHCCCeEEEEcCCCCC-c
Q 016204 32 AWLLDQFGVLHDGK---------------------------------KPYPG--AISTLEMLATTGAKMVVISNSSRR-A 75 (393)
Q Consensus 32 ~i~~DlDGtL~~g~---------------------------------~~ipg--a~eal~~L~~~G~~v~~~TN~~~~-~ 75 (393)
+|+||+||||++.. ..+|+ +.|+|++|+++|++++++||++.. .
T Consensus 65 aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~ 144 (237)
T TIGR01672 65 AVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIFFVTGRTPGKT 144 (237)
T ss_pred EEEEeCCCccccCcHHHhCCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHHHHHHHHCCCEEEEEeCCCCCcC
Confidence 99999999998722 12444 999999999999999999987543 3
Q ss_pred hHHHHHHH-hCCCCCcccceEEeC
Q 016204 76 STTIDKLK-SLGFDPSLFAGAITS 98 (393)
Q Consensus 76 ~~~~~~l~-~lG~~~~~~~~iits 98 (393)
+...+.+. .+|++... +.++++
T Consensus 145 ~~~a~~ll~~lGi~~~f-~~i~~~ 167 (237)
T TIGR01672 145 DTVSKTLAKNFHIPAMN-PVIFAG 167 (237)
T ss_pred HHHHHHHHHHhCCchhe-eEEECC
Confidence 44444444 58997543 455553
No 151
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=97.98 E-value=1.6e-05 Score=70.22 Aligned_cols=49 Identities=20% Similarity=0.252 Sum_probs=37.6
Q ss_pred cCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCcccceEEeCc
Q 016204 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSG 99 (393)
Q Consensus 46 ~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~~~~~iits~ 99 (393)
.++||+.++|+.|+++|++++++||+ ......|+.+|+.... +.++++.
T Consensus 88 ~~~~g~~~~l~~l~~~g~~i~i~S~~----~~~~~~l~~~~l~~~f-~~v~~~~ 136 (185)
T TIGR02009 88 EVLPGIENFLKRLKKKGIAVGLGSSS----KNADRILAKLGLTDYF-DAIVDAD 136 (185)
T ss_pred CCCcCHHHHHHHHHHcCCeEEEEeCc----hhHHHHHHHcChHHHC-CEeeehh
Confidence 56799999999999999999999987 2234456677876553 7777653
No 152
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=97.98 E-value=1.8e-05 Score=72.11 Aligned_cols=52 Identities=31% Similarity=0.454 Sum_probs=39.6
Q ss_pred cCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCcccceEEeCch
Q 016204 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (393)
Q Consensus 46 ~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~~~~~iits~~ 100 (393)
.++||+.++|++|+++|++++++||+.+.. ...+++.+|+...- +.++++..
T Consensus 94 ~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~--~~~~l~~~~l~~~f-~~i~~~~~ 145 (221)
T TIGR02253 94 RVYPGVRDTLMELRESGYRLGIITDGLPVK--QWEKLERLGVRDFF-DAVITSEE 145 (221)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEeCCchHH--HHHHHHhCChHHhc-cEEEEecc
Confidence 457899999999999999999999876433 33456778886553 77887643
No 153
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=97.97 E-value=2.7e-05 Score=71.09 Aligned_cols=51 Identities=25% Similarity=0.404 Sum_probs=37.7
Q ss_pred cCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCcccceEEeCc
Q 016204 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSG 99 (393)
Q Consensus 46 ~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~~~~~iits~ 99 (393)
.++||+.++|+.|+++|++++++||+... .....++.+|+.... +.++++.
T Consensus 93 ~~~~g~~~~l~~l~~~g~~~~i~S~~~~~--~~~~~l~~~~l~~~f-~~~~~~~ 143 (226)
T PRK13222 93 RLYPGVKETLAALKAAGYPLAVVTNKPTP--FVAPLLEALGIADYF-SVVIGGD 143 (226)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEEeCCCHH--HHHHHHHHcCCccCc-cEEEcCC
Confidence 36799999999999999999999987543 333455667776443 6666553
No 154
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=97.93 E-value=2.7e-05 Score=70.96 Aligned_cols=52 Identities=19% Similarity=0.376 Sum_probs=38.7
Q ss_pred cCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCC--CcccceEEeCch
Q 016204 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD--PSLFAGAITSGE 100 (393)
Q Consensus 46 ~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~--~~~~~~iits~~ 100 (393)
+++||+.++|+.|+++|+++.++||+.+.. ....|+.+|+. .. ++.++++..
T Consensus 87 ~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~--~~~~l~~~~l~~~~~-f~~i~~~~~ 140 (220)
T TIGR03351 87 VALPGAEEAFRSLRSSGIKVALTTGFDRDT--AERLLEKLGWTVGDD-VDAVVCPSD 140 (220)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEeCCchHH--HHHHHHHhhhhhhcc-CCEEEcCCc
Confidence 467999999999999999999999876544 23345556765 33 377777754
No 155
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=97.91 E-value=2.9e-05 Score=72.90 Aligned_cols=51 Identities=16% Similarity=0.270 Sum_probs=39.3
Q ss_pred CCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCcccceEEeCch
Q 016204 47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (393)
Q Consensus 47 ~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~~~~~iits~~ 100 (393)
++||+.++|+.|+++|++++++||+++.. ....+..+|+.... +.++++..
T Consensus 110 l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~--~~~~l~~~gl~~~F-d~ii~~~d 160 (260)
T PLN03243 110 LRPGSREFVQALKKHEIPIAVASTRPRRY--LERAIEAVGMEGFF-SVVLAAED 160 (260)
T ss_pred cCCCHHHHHHHHHHCCCEEEEEeCcCHHH--HHHHHHHcCCHhhC-cEEEeccc
Confidence 57999999999999999999999876543 33445567876553 78887753
No 156
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=97.90 E-value=3.5e-05 Score=69.08 Aligned_cols=52 Identities=21% Similarity=0.378 Sum_probs=40.3
Q ss_pred cCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCcccceEEeCch
Q 016204 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (393)
Q Consensus 46 ~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~~~~~iits~~ 100 (393)
.++||+.++|++|+++|++++++||++.. .....++.+|+.... +.++++..
T Consensus 92 ~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~--~~~~~l~~~gl~~~f-d~i~~s~~ 143 (198)
T TIGR01428 92 PPHPDVPAGLRALKERGYRLAILSNGSPA--MLKSLVKHAGLDDPF-DAVLSADA 143 (198)
T ss_pred CCCCCHHHHHHHHHHCCCeEEEEeCCCHH--HHHHHHHHCCChhhh-heeEehhh
Confidence 56799999999999999999999997643 344556678876553 78887753
No 157
>PRK08238 hypothetical protein; Validated
Probab=97.88 E-value=0.0002 Score=72.91 Aligned_cols=35 Identities=17% Similarity=0.092 Sum_probs=28.2
Q ss_pred HHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCC
Q 016204 317 AMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIH 355 (393)
Q Consensus 317 ~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~ 355 (393)
+.++ .++++|+||+ .+|+.+++.+| ..+.|..+..
T Consensus 135 ~~l~--~~~~~yvGDS-~~Dlp~~~~A~-~av~Vn~~~~ 169 (479)
T PRK08238 135 EAFG--ERGFDYAGNS-AADLPVWAAAR-RAIVVGASPG 169 (479)
T ss_pred HHhC--ccCeeEecCC-HHHHHHHHhCC-CeEEECCCHH
Confidence 4454 3568999999 79999999999 7888887654
No 158
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=97.85 E-value=4.8e-05 Score=71.98 Aligned_cols=50 Identities=26% Similarity=0.379 Sum_probs=36.9
Q ss_pred CCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCcccceEEeCc
Q 016204 47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSG 99 (393)
Q Consensus 47 ~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~~~~~iits~ 99 (393)
++||+.++|+.|+++|++++++||++... ....+..+|+.... +.++++.
T Consensus 102 ~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~--~~~~l~~~~i~~~f-~~i~~~d 151 (272)
T PRK13223 102 VYPGVRDTLKWLKKQGVEMALITNKPERF--VAPLLDQMKIGRYF-RWIIGGD 151 (272)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEECCcHHH--HHHHHHHcCcHhhC-eEEEecC
Confidence 47999999999999999999999876542 33445567775443 6666654
No 159
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=97.83 E-value=4.1e-05 Score=70.26 Aligned_cols=51 Identities=20% Similarity=0.316 Sum_probs=38.6
Q ss_pred CCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCcccceEEeCch
Q 016204 47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (393)
Q Consensus 47 ~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~~~~~iits~~ 100 (393)
++||+.+.|+.|+++|++++++||+++.. ...++..+|+...- +.++++..
T Consensus 94 ~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~--~~~~l~~~~l~~~f-d~iv~s~~ 144 (224)
T PRK14988 94 LREDTVPFLEALKASGKRRILLTNAHPHN--LAVKLEHTGLDAHL-DLLLSTHT 144 (224)
T ss_pred cCCCHHHHHHHHHhCCCeEEEEeCcCHHH--HHHHHHHCCcHHHC-CEEEEeee
Confidence 46899999999999999999999876443 33346667876553 77887653
No 160
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=97.82 E-value=5.2e-05 Score=71.72 Aligned_cols=50 Identities=18% Similarity=0.275 Sum_probs=37.4
Q ss_pred cCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCcccceEEeC
Q 016204 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITS 98 (393)
Q Consensus 46 ~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~~~~~iits 98 (393)
+++||+.++|+.|+++|+++.++||+++.. +...++.+|+...- +.+++.
T Consensus 142 ~l~pg~~e~L~~L~~~gi~laIvSn~~~~~--~~~~L~~~gl~~~F-~~vi~~ 191 (273)
T PRK13225 142 QLFPGVADLLAQLRSRSLCLGILSSNSRQN--IEAFLQRQGLRSLF-SVVQAG 191 (273)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEeCCCHHH--HHHHHHHcCChhhe-EEEEec
Confidence 457999999999999999999999876443 34446677876443 556554
No 161
>PRK09449 dUMP phosphatase; Provisional
Probab=97.79 E-value=4.6e-05 Score=69.60 Aligned_cols=50 Identities=26% Similarity=0.361 Sum_probs=37.0
Q ss_pred CCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCcccceEEeCch
Q 016204 47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (393)
Q Consensus 47 ~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~~~~~iits~~ 100 (393)
++||+.++|+.|+ +|+++.++||+++.. ....+..+|+...- +.++++..
T Consensus 96 ~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~--~~~~l~~~~l~~~f-d~v~~~~~ 145 (224)
T PRK09449 96 PLPGAVELLNALR-GKVKMGIITNGFTEL--QQVRLERTGLRDYF-DLLVISEQ 145 (224)
T ss_pred cCccHHHHHHHHH-hCCeEEEEeCCcHHH--HHHHHHhCChHHHc-CEEEEECc
Confidence 5689999999999 689999999976432 33456677876553 77887743
No 162
>PLN02151 trehalose-phosphatase
Probab=97.75 E-value=0.0021 Score=62.58 Aligned_cols=66 Identities=14% Similarity=0.173 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhCCCCC---cEEEEecCchhhHHHHHHcC----CeEEEEcCCCCCcccCCCCccccCChhHHHHHHHh
Q 016204 309 KIIYKSAMAMVGVDAC---DSIAVGDSLHHDIKGANAAG----IQSVFIIGGIHATELGLDSYGEVADLSSVQTLVSK 379 (393)
Q Consensus 309 p~~~~~~~~~lgi~~~---~~v~VGDsl~~Di~~a~~aG----~~~i~v~~G~~~~~~~~~~~~~i~~~~~l~~~l~~ 379 (393)
...++.+++.++..-. -++|+||. .+|-.+.+... --+|.|..+ ..+ ..|.+.++++.++..+|+.
T Consensus 271 G~Av~~Ll~~~~~~~~~~~~pvyiGDD-~TDEDaF~~L~~~~~G~gI~Vg~~--~k~--T~A~y~L~dp~eV~~~L~~ 343 (354)
T PLN02151 271 GKALEFLLESLGYANCTDVFPIYIGDD-RTDEDAFKILRDKKQGLGILVSKY--AKE--TNASYSLQEPDEVMEFLER 343 (354)
T ss_pred HHHHHHHHHhcccccCCCCeEEEEcCC-CcHHHHHHHHhhcCCCccEEeccC--CCC--CcceEeCCCHHHHHHHHHH
Confidence 5688999998876432 28999999 79999887652 123455432 111 3577899999999998875
No 163
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=97.75 E-value=6.8e-05 Score=66.15 Aligned_cols=49 Identities=20% Similarity=0.285 Sum_probs=38.1
Q ss_pred cCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCcccceEEeCc
Q 016204 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSG 99 (393)
Q Consensus 46 ~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~~~~~iits~ 99 (393)
.++||+.++|+.|+++|+++.++||+.. ....++.+|+.... +.++++.
T Consensus 87 ~~~pg~~~~L~~L~~~g~~~~i~s~~~~----~~~~l~~~~l~~~f-~~~~~~~ 135 (185)
T TIGR01990 87 DVLPGIKNLLDDLKKNNIKIALASASKN----APTVLEKLGLIDYF-DAIVDPA 135 (185)
T ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCcc----HHHHHHhcCcHhhC-cEEEehh
Confidence 5789999999999999999999998532 12457778887554 7777764
No 164
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=97.74 E-value=5.8e-05 Score=68.32 Aligned_cols=53 Identities=19% Similarity=0.236 Sum_probs=36.8
Q ss_pred cCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCcccceEEeCc
Q 016204 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSG 99 (393)
Q Consensus 46 ~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~~~~~iits~ 99 (393)
.++||+.++|+.|+++|++++++||+..........+...++... ++.+++|.
T Consensus 94 ~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~-fd~v~~s~ 146 (211)
T TIGR02247 94 KLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIMAL-FDAVVESC 146 (211)
T ss_pred ccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhHhh-CCEEEEee
Confidence 467999999999999999999999987544222222333455333 37777663
No 165
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=97.74 E-value=4.3e-05 Score=66.07 Aligned_cols=53 Identities=34% Similarity=0.520 Sum_probs=42.0
Q ss_pred CCcCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCcccceEEeCc
Q 016204 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSG 99 (393)
Q Consensus 44 g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~~~~~iits~ 99 (393)
..++.||+.++|+.|+++|++++++||++ .......++.+|+.... +.++++.
T Consensus 75 ~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~--~~~~~~~l~~~~~~~~f-~~i~~~~ 127 (176)
T PF13419_consen 75 KLQPYPGVRELLERLKAKGIPLVIVSNGS--RERIERVLERLGLDDYF-DEIISSD 127 (176)
T ss_dssp GEEESTTHHHHHHHHHHTTSEEEEEESSE--HHHHHHHHHHTTHGGGC-SEEEEGG
T ss_pred ccchhhhhhhhhhhcccccceeEEeecCC--ccccccccccccccccc-ccccccc
Confidence 33678999999999999999999999885 34455677778887444 7888775
No 166
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=97.73 E-value=4.4e-05 Score=64.49 Aligned_cols=58 Identities=31% Similarity=0.476 Sum_probs=47.5
Q ss_pred CCcEEEEeccccccCCCcCCcc-----------HHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCC
Q 016204 29 RFKAWLLDQFGVLHDGKKPYPG-----------AISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (393)
Q Consensus 29 ~~k~i~~DlDGtL~~g~~~ipg-----------a~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~ 88 (393)
++|++++|+||||++|.--+.. ---.|+.|.+.|+++.++| +|.+.-+..+..+||+.
T Consensus 7 ~IkLli~DVDGvLTDG~ly~~~~Gee~KaFnv~DG~Gik~l~~~Gi~vAIIT--Gr~s~ive~Ra~~LGI~ 75 (170)
T COG1778 7 NIKLLILDVDGVLTDGKLYYDENGEEIKAFNVRDGHGIKLLLKSGIKVAIIT--GRDSPIVEKRAKDLGIK 75 (170)
T ss_pred hceEEEEeccceeecCeEEEcCCCceeeeeeccCcHHHHHHHHcCCeEEEEe--CCCCHHHHHHHHHcCCc
Confidence 8999999999999997632211 1237889999999999999 88888888889999995
No 167
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=97.73 E-value=8.6e-05 Score=64.61 Aligned_cols=39 Identities=18% Similarity=0.184 Sum_probs=32.1
Q ss_pred HHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcC
Q 016204 313 KSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIG 352 (393)
Q Consensus 313 ~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~ 352 (393)
.+.+..+|.+++++++|||+ +.|+.++..+|+.......
T Consensus 102 ~K~L~~l~~~~~~vIiVDD~-~~~~~~~~~NgI~i~~f~~ 140 (162)
T TIGR02251 102 VKDLSLVGKDLSKVIIIDNS-PYSYSLQPDNAIPIKSWFG 140 (162)
T ss_pred EeEchhcCCChhhEEEEeCC-hhhhccCccCEeecCCCCC
Confidence 34456667788999999999 7999999999998776664
No 168
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=97.71 E-value=0.00023 Score=74.24 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=37.2
Q ss_pred CCcEEEEecccccc----CCCcCCccHHHHHHHHHHCCCeEEEEcCCCC
Q 016204 29 RFKAWLLDQFGVLH----DGKKPYPGAISTLEMLATTGAKMVVISNSSR 73 (393)
Q Consensus 29 ~~k~i~~DlDGtL~----~g~~~ipga~eal~~L~~~G~~v~~~TN~~~ 73 (393)
....+.++.||++. -.+++.||+.++|++|+++|++++++||..+
T Consensus 384 g~~~~~~~~~~~~~g~~~~~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~ 432 (562)
T TIGR01511 384 GSTSVLVAVNGELAGVFALEDQLRPEAKEVIQALKRRGIEPVMLTGDNR 432 (562)
T ss_pred CCEEEEEEECCEEEEEEEecccccHHHHHHHHHHHHcCCeEEEEcCCCH
Confidence 35678888888753 3677889999999999999999999997643
No 169
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=97.70 E-value=0.00027 Score=73.71 Aligned_cols=57 Identities=21% Similarity=0.238 Sum_probs=42.4
Q ss_pred CCcEEEEecccccc----CCCcCCccHHHHHHHHHHCC-CeEEEEcCCCCCchHHHHHHHhCCC
Q 016204 29 RFKAWLLDQFGVLH----DGKKPYPGAISTLEMLATTG-AKMVVISNSSRRASTTIDKLKSLGF 87 (393)
Q Consensus 29 ~~k~i~~DlDGtL~----~g~~~ipga~eal~~L~~~G-~~v~~~TN~~~~~~~~~~~l~~lG~ 87 (393)
.+..+.+..||++. ....+.||+.++|++|+++| +++.++||..+.. ....++++|+
T Consensus 363 g~~~~~v~~~~~~~g~i~~~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~--a~~i~~~lgi 424 (556)
T TIGR01525 363 GKTVVFVAVDGELLGVIALRDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSA--AEAVAAELGI 424 (556)
T ss_pred CcEEEEEEECCEEEEEEEecccchHhHHHHHHHHHHcCCCeEEEEeCCCHHH--HHHHHHHhCC
Confidence 45778888888754 36788899999999999999 9999999765433 2223344555
No 170
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=97.69 E-value=9.7e-05 Score=68.92 Aligned_cols=53 Identities=17% Similarity=0.202 Sum_probs=36.3
Q ss_pred cCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCcccceEEeCch
Q 016204 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (393)
Q Consensus 46 ~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~~~~~iits~~ 100 (393)
+++||+.++|+.|+++|+++.++||+++.. ....++.+|+....++.|+++..
T Consensus 99 ~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~--~~~~l~~~gl~~~f~d~ii~~~~ 151 (253)
T TIGR01422 99 SPIPGVIEVIAYLRARGIKIGSTTGYTREM--MDVVAPEAALQGYRPDYNVTTDD 151 (253)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEECCCcHHH--HHHHHHHHHhcCCCCceEEcccc
Confidence 457899999999999999999999876443 22334445554331266776643
No 171
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=97.68 E-value=0.0001 Score=65.33 Aligned_cols=49 Identities=18% Similarity=0.279 Sum_probs=33.2
Q ss_pred CCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCcccceEEeCch
Q 016204 47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (393)
Q Consensus 47 ~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~~~~~iits~~ 100 (393)
++| +.+.|+.|++. ++++++||+++.. ....|..+|+...- +.|+++..
T Consensus 89 ~~~-~~e~L~~L~~~-~~l~I~T~~~~~~--~~~~l~~~~l~~~f-d~i~~~~~ 137 (188)
T PRK10725 89 PLP-LIEVVKAWHGR-RPMAVGTGSESAI--AEALLAHLGLRRYF-DAVVAADD 137 (188)
T ss_pred Ccc-HHHHHHHHHhC-CCEEEEcCCchHH--HHHHHHhCCcHhHc-eEEEehhh
Confidence 355 46888888765 8999999765443 33456677876553 77887643
No 172
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=97.66 E-value=0.00023 Score=73.88 Aligned_cols=56 Identities=20% Similarity=0.089 Sum_probs=41.8
Q ss_pred hCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCC-CCcccCCCCcccc--CChhHHHHHHH
Q 016204 319 VGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGI-HATELGLDSYGEV--ADLSSVQTLVS 378 (393)
Q Consensus 319 lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~-~~~~~~~~~~~~i--~~~~~l~~~l~ 378 (393)
++.+.++++||||+ .||+.++++||+ .+.+|. ........++.++ +++.++.+++.
T Consensus 421 l~~~~~~v~~vGDg-~nD~~al~~A~v---gia~g~~~~~~~~~~ad~vl~~~~l~~l~~~i~ 479 (536)
T TIGR01512 421 LREKYGPVAMVGDG-INDAPALAAADV---GIAMGASGSDVAIETADVVLLNDDLSRLPQAIR 479 (536)
T ss_pred HHhcCCEEEEEeCC-HHHHHHHHhCCE---EEEeCCCccHHHHHhCCEEEECCCHHHHHHHHH
Confidence 33344799999999 799999999994 777774 3333335678887 79999887665
No 173
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=97.66 E-value=3.8e-05 Score=70.66 Aligned_cols=61 Identities=21% Similarity=0.291 Sum_probs=51.5
Q ss_pred CCcEEEEeccccccC---------------------------CCcCCccHHHHHHHHHHCCCeEEEEcCCCCCc-hHHHH
Q 016204 29 RFKAWLLDQFGVLHD---------------------------GKKPYPGAISTLEMLATTGAKMVVISNSSRRA-STTID 80 (393)
Q Consensus 29 ~~k~i~~DlDGtL~~---------------------------g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~-~~~~~ 80 (393)
+..+|+||||+|+++ ...++||+.+++++++++|.+|+|+||.+... ....+
T Consensus 71 ~~~avv~DIDeTvLsn~~y~~~~~~~~~~~~~~~w~~wv~~~~~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~ 150 (229)
T PF03767_consen 71 KPPAVVFDIDETVLSNSPYYAYLIFGGESFSPEDWDEWVASGKAPAIPGALELYNYARSRGVKVFFITGRPESQREATEK 150 (229)
T ss_dssp SEEEEEEESBTTTEEHHHHHHHHHHHTHHH-CCHHHHHHHCTGGEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHH
T ss_pred CCcEEEEECCcccccCHHHHHHHhhccCCCChHHHHHHHhcccCcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHH
Confidence 689999999999875 22678999999999999999999999865444 46677
Q ss_pred HHHhCCCCC
Q 016204 81 KLKSLGFDP 89 (393)
Q Consensus 81 ~l~~lG~~~ 89 (393)
-|.+.|++.
T Consensus 151 nL~~~G~~~ 159 (229)
T PF03767_consen 151 NLKKAGFPG 159 (229)
T ss_dssp HHHHHTTST
T ss_pred HHHHcCCCc
Confidence 888999874
No 174
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=97.63 E-value=0.00011 Score=66.23 Aligned_cols=53 Identities=23% Similarity=0.318 Sum_probs=40.4
Q ss_pred CCcCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCcccceEEeCc
Q 016204 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSG 99 (393)
Q Consensus 44 g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~~~~~iits~ 99 (393)
.-.++||+.++|++|+++|++++++||+++.. ....+..+|+.... +.++++.
T Consensus 73 ~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~--~~~~l~~~~l~~~f-~~i~~~~ 125 (205)
T TIGR01454 73 EVEVFPGVPELLAELRADGVGTAIATGKSGPR--ARSLLEALGLLPLF-DHVIGSD 125 (205)
T ss_pred ccccCCCHHHHHHHHHHCCCeEEEEeCCchHH--HHHHHHHcCChhhe-eeEEecC
Confidence 34678999999999999999999999876543 33456677886543 6777764
No 175
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=97.63 E-value=0.00012 Score=66.90 Aligned_cols=62 Identities=21% Similarity=0.383 Sum_probs=50.6
Q ss_pred CCcEEEEeccccccC---------------------------CCcCCccHHHHHHHHHHCCCeEEEEcCCCCCc-hHHHH
Q 016204 29 RFKAWLLDQFGVLHD---------------------------GKKPYPGAISTLEMLATTGAKMVVISNSSRRA-STTID 80 (393)
Q Consensus 29 ~~k~i~~DlDGtL~~---------------------------g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~-~~~~~ 80 (393)
..++++||+|-|++. ...++|++++++++|+++|++|+|+||.+... ....+
T Consensus 76 g~~A~V~DIDET~LsN~py~~~~~~g~~~~~~~~~~~wv~~~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~ 155 (229)
T TIGR01675 76 GMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPTAFWLWLGKGAAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLD 155 (229)
T ss_pred CCcEEEEccccccccCHHHHHHhccCCCcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHH
Confidence 679999999999876 22578999999999999999999999655433 34667
Q ss_pred HHHhCCCCCc
Q 016204 81 KLKSLGFDPS 90 (393)
Q Consensus 81 ~l~~lG~~~~ 90 (393)
-|.+.|++..
T Consensus 156 nL~~~G~~~~ 165 (229)
T TIGR01675 156 NLINAGFTGW 165 (229)
T ss_pred HHHHcCCCCc
Confidence 8889999753
No 176
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=97.59 E-value=0.00093 Score=54.77 Aligned_cols=64 Identities=14% Similarity=0.113 Sum_probs=49.5
Q ss_pred HHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCcccCCCCccccCChhHHHHHHHh
Q 016204 315 AMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATELGLDSYGEVADLSSVQTLVSK 379 (393)
Q Consensus 315 ~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~~~~~~~~~i~~~~~l~~~l~~ 379 (393)
++..++-+-+.|+||||. .||+.+.++|-+..+-+..+.-....+..++.++.++.++.+++..
T Consensus 85 ii~eLkk~~~k~vmVGnG-aND~laLr~ADlGI~tiq~e~v~~r~l~~ADvvik~i~e~ldl~~~ 148 (152)
T COG4087 85 IIRELKKRYEKVVMVGNG-ANDILALREADLGICTIQQEGVPERLLLTADVVLKEIAEILDLLKD 148 (152)
T ss_pred HHHHhcCCCcEEEEecCC-cchHHHhhhcccceEEeccCCcchHHHhhchhhhhhHHHHHHHhhc
Confidence 333444344789999999 7999999999999888876555555557889999999998887654
No 177
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=97.59 E-value=0.00015 Score=65.55 Aligned_cols=52 Identities=21% Similarity=0.332 Sum_probs=39.0
Q ss_pred CcCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCcccceEEeCc
Q 016204 45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSG 99 (393)
Q Consensus 45 ~~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~~~~~iits~ 99 (393)
..++||+.++|+.|+++|++++++||+++. .....++.+|+.... +.++++.
T Consensus 84 ~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~--~~~~~l~~~~l~~~f-~~~~~~~ 135 (213)
T TIGR01449 84 TSVFPGVEATLGALRAKGLRLGLVTNKPTP--LARPLLELLGLAKYF-SVLIGGD 135 (213)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHH--HHHHHHHHcCcHhhC-cEEEecC
Confidence 367899999999999999999999987543 334456667876543 6676654
No 178
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=97.58 E-value=0.00017 Score=64.38 Aligned_cols=41 Identities=17% Similarity=0.066 Sum_probs=30.5
Q ss_pred cCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCC
Q 016204 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (393)
Q Consensus 46 ~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~ 88 (393)
.+.||+.++|+.|+++|++++++||+.+.. +...++.+|+.
T Consensus 80 ~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~--~~~~l~~~g~~ 120 (201)
T TIGR01491 80 SLRDYAEELVRWLKEKGLKTAIVSGGIMCL--AKKVAEKLNPD 120 (201)
T ss_pred CCCccHHHHHHHHHHCCCEEEEEeCCcHHH--HHHHHHHhCCC
Confidence 357899999999999999999999765433 23334556764
No 179
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.57 E-value=0.00019 Score=60.14 Aligned_cols=61 Identities=26% Similarity=0.238 Sum_probs=46.2
Q ss_pred ccccccCCCcHHHHHHHHHHh-C----CCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCccc
Q 016204 299 GEVRWMGKPDKIIYKSAMAMV-G----VDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATEL 359 (393)
Q Consensus 299 ~~~~~~gKP~p~~~~~~~~~l-g----i~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~~ 359 (393)
......++-+|..-....+++ | ..+++++||||++.+||.+|+..|...+|...|....+.
T Consensus 110 IpVlRHs~kKP~ct~E~~~y~~~Nshv~~~se~~~vGDRlfTDI~~aN~mGs~gVw~~~gv~~~~n 175 (190)
T KOG2961|consen 110 IPVLRHSVKKPACTAEEVEYHFGNSHVCTSSELIMVGDRLFTDIVYANRMGSLGVWTEPGVRAEEN 175 (190)
T ss_pred CceEeecccCCCccHHHHHHHhCCcccCChhHeEEEccchhhhHhhhhhccceeEEecccccccch
Confidence 333344444555555555543 4 578999999999999999999999999999999876653
No 180
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=97.56 E-value=0.00013 Score=74.29 Aligned_cols=51 Identities=10% Similarity=0.156 Sum_probs=38.6
Q ss_pred CCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCcccceEEeCch
Q 016204 47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (393)
Q Consensus 47 ~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~~~~~iits~~ 100 (393)
++||+.+.|+.|+++|+++.++||+++.. ....+..+|+.... +.++++..
T Consensus 331 l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~--~~~~l~~~~l~~~f-~~i~~~d~ 381 (459)
T PRK06698 331 LYPNVKEIFTYIKENNCSIYIASNGLTEY--LRAIVSYYDLDQWV-TETFSIEQ 381 (459)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEeCCchHH--HHHHHHHCCcHhhc-ceeEecCC
Confidence 47999999999999999999999865443 34456667876543 67777653
No 181
>PLN02940 riboflavin kinase
Probab=97.54 E-value=0.00015 Score=71.87 Aligned_cols=52 Identities=29% Similarity=0.420 Sum_probs=38.2
Q ss_pred cCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHH-hCCCCCcccceEEeCch
Q 016204 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLK-SLGFDPSLFAGAITSGE 100 (393)
Q Consensus 46 ~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~-~lG~~~~~~~~iits~~ 100 (393)
.++||+.++|++|+++|+++.++||+++.. ....+. ..|+...- +.++++..
T Consensus 93 ~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~--~~~~l~~~~gl~~~F-d~ii~~d~ 145 (382)
T PLN02940 93 KALPGANRLIKHLKSHGVPMALASNSPRAN--IEAKISCHQGWKESF-SVIVGGDE 145 (382)
T ss_pred CCCcCHHHHHHHHHHCCCcEEEEeCCcHHH--HHHHHHhccChHhhC-CEEEehhh
Confidence 357999999999999999999999986543 223444 46775443 77777654
No 182
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=97.53 E-value=0.00023 Score=64.33 Aligned_cols=63 Identities=35% Similarity=0.468 Sum_probs=54.3
Q ss_pred CCcEEEEeccccccC---------------------------CCcCCccHHHHHHHHHHCCCeEEEEcCCCCCc--hHHH
Q 016204 29 RFKAWLLDQFGVLHD---------------------------GKKPYPGAISTLEMLATTGAKMVVISNSSRRA--STTI 79 (393)
Q Consensus 29 ~~k~i~~DlDGtL~~---------------------------g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~--~~~~ 79 (393)
+.++|++|||-|+++ ..+++|||+|++++..++|..|+++||..+.. ....
T Consensus 78 K~~aVvlDlDETvLdNs~Yqgy~v~nnk~f~pe~Wd~wV~a~~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~ 157 (274)
T COG2503 78 KKKAVVLDLDETVLDNSAYQGYQVLNNKGFTPETWDKWVQAKKSKAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTI 157 (274)
T ss_pred CCceEEEecchHhhcCccccchhhhcCCCCCccchHHHHhhcccccCccHHHHHHHHHhcCcEEEEEeccchhcccchhH
Confidence 556999999999987 22689999999999999999999999987665 4778
Q ss_pred HHHHhCCCCCcc
Q 016204 80 DKLKSLGFDPSL 91 (393)
Q Consensus 80 ~~l~~lG~~~~~ 91 (393)
+-|.+.|++...
T Consensus 158 ~nLk~~g~~~~~ 169 (274)
T COG2503 158 ENLKSEGLPQVL 169 (274)
T ss_pred HHHHHcCccccc
Confidence 889999998655
No 183
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=97.53 E-value=0.001 Score=62.56 Aligned_cols=41 Identities=12% Similarity=0.113 Sum_probs=30.9
Q ss_pred CcCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCC
Q 016204 45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGF 87 (393)
Q Consensus 45 ~~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~ 87 (393)
-.+.||+.++++.|+++|++++++|++.+ .-+...|+.+|+
T Consensus 120 l~l~pG~~efl~~L~~~GIpv~IvS~G~~--~~Ie~vL~~lgl 160 (277)
T TIGR01544 120 VMLKDGYENFFDKLQQHSIPVFIFSAGIG--NVLEEVLRQAGV 160 (277)
T ss_pred CccCcCHHHHHHHHHHCCCcEEEEeCCcH--HHHHHHHHHcCC
Confidence 46679999999999999999999996544 333334445665
No 184
>PHA02597 30.2 hypothetical protein; Provisional
Probab=97.41 E-value=0.0003 Score=62.93 Aligned_cols=30 Identities=13% Similarity=0.252 Sum_probs=23.5
Q ss_pred cCCccHHHHHHHHHHCCCeEEEEcCCCCCch
Q 016204 46 KPYPGAISTLEMLATTGAKMVVISNSSRRAS 76 (393)
Q Consensus 46 ~~ipga~eal~~L~~~G~~v~~~TN~~~~~~ 76 (393)
.++||+.++|++|++++ +++++||.+....
T Consensus 74 ~~~pG~~e~L~~L~~~~-~~~i~Tn~~~~~~ 103 (197)
T PHA02597 74 SAYDDALDVINKLKEDY-DFVAVTALGDSID 103 (197)
T ss_pred cCCCCHHHHHHHHHhcC-CEEEEeCCccchh
Confidence 46899999999999875 5778887655443
No 185
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=97.40 E-value=0.006 Score=58.97 Aligned_cols=56 Identities=16% Similarity=0.198 Sum_probs=43.6
Q ss_pred CCcEEEEeccccccCCCcCC-c--cHHHHHHHHHHCCCeEEEEcCCCCCc-hHHHHHHHh
Q 016204 29 RFKAWLLDQFGVLHDGKKPY-P--GAISTLEMLATTGAKMVVISNSSRRA-STTIDKLKS 84 (393)
Q Consensus 29 ~~k~i~~DlDGtL~~g~~~i-p--ga~eal~~L~~~G~~v~~~TN~~~~~-~~~~~~l~~ 84 (393)
..+++-||-|+|||.++.-+ + -.+.-|-+|-++|++|.+||..+.+. ..+.++|..
T Consensus 146 ~L~LvTFDgDvTLY~DG~sl~~d~pvi~~ii~LL~~gv~VgIVTAAGY~~a~kY~~RL~G 205 (408)
T PF06437_consen 146 GLKLVTFDGDVTLYEDGASLEPDNPVIPRIIKLLRRGVKVGIVTAAGYPGAEKYEERLHG 205 (408)
T ss_pred CceEEEEcCCcccccCCCCCCCCchHHHHHHHHHhcCCeEEEEeCCCCCChHHHHHHHHH
Confidence 47899999999999977665 2 25555666778899999999988655 577777754
No 186
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=97.39 E-value=0.0014 Score=71.98 Aligned_cols=62 Identities=13% Similarity=0.083 Sum_probs=43.4
Q ss_pred HHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCcc-cCCCCcccc--CChhHHHHHHH
Q 016204 313 KSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATE-LGLDSYGEV--ADLSSVQTLVS 378 (393)
Q Consensus 313 ~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~-~~~~~~~~i--~~~~~l~~~l~ 378 (393)
..+.+.++...+.+.|+||+ .||+.++++|++ ++..|....+ ....++.++ +++..+...+.
T Consensus 607 ~~iv~~lq~~g~~v~mvGDG-vND~pAl~~AdV---Gia~g~~g~~va~~aaDivl~dd~~~~i~~~i~ 671 (884)
T TIGR01522 607 MKIVKALQKRGDVVAMTGDG-VNDAPALKLADI---GVAMGQTGTDVAKEAADMILTDDDFATILSAIE 671 (884)
T ss_pred HHHHHHHHHCCCEEEEECCC-cccHHHHHhCCe---eEecCCCcCHHHHHhcCEEEcCCCHHHHHHHHH
Confidence 44444444445789999999 799999999994 6666643333 224678887 56988887665
No 187
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=97.38 E-value=0.0004 Score=64.73 Aligned_cols=61 Identities=18% Similarity=0.322 Sum_probs=49.7
Q ss_pred CCcEEEEeccccccC----------------------------CCcCCccHHHHHHHHHHCCCeEEEEcCCCCCc-hHHH
Q 016204 29 RFKAWLLDQFGVLHD----------------------------GKKPYPGAISTLEMLATTGAKMVVISNSSRRA-STTI 79 (393)
Q Consensus 29 ~~k~i~~DlDGtL~~----------------------------g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~-~~~~ 79 (393)
..++++||||+|+++ .-.++|++.++.++|+++|.+|+++||.+... ....
T Consensus 100 ~~dA~V~DIDET~LsN~pY~~~~~~g~e~~~~~~w~~~Wv~~~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~ 179 (275)
T TIGR01680 100 EKDTFLFNIDGTALSNIPYYKKHGYGSEKFDSELYDEEFVNKGEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTE 179 (275)
T ss_pred CCCEEEEECccccccCHHHHHHhcCCCCcCChhhhhHHHHhcccCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHH
Confidence 459999999999873 12458999999999999999999999765433 3566
Q ss_pred HHHHhCCCCC
Q 016204 80 DKLKSLGFDP 89 (393)
Q Consensus 80 ~~l~~lG~~~ 89 (393)
+-|.+.|++.
T Consensus 180 ~NL~kaGy~~ 189 (275)
T TIGR01680 180 ANLKKAGYHT 189 (275)
T ss_pred HHHHHcCCCC
Confidence 7788899974
No 188
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=97.37 E-value=0.00024 Score=60.75 Aligned_cols=29 Identities=41% Similarity=0.454 Sum_probs=25.9
Q ss_pred CCccHHHHHHHHHHCCCeEEEEcCCCCCc
Q 016204 47 PYPGAISTLEMLATTGAKMVVISNSSRRA 75 (393)
Q Consensus 47 ~ipga~eal~~L~~~G~~v~~~TN~~~~~ 75 (393)
.+||+.++|+.|+++|+++.++||+.+..
T Consensus 65 ~~~g~~e~l~~L~~~g~~~~i~T~~~~~~ 93 (154)
T TIGR01549 65 YIRGAADLLKRLKEAGIKLGIISNGSLRA 93 (154)
T ss_pred eccCHHHHHHHHHHCcCeEEEEeCCchHH
Confidence 46899999999999999999999887655
No 189
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=97.36 E-value=0.0003 Score=65.10 Aligned_cols=42 Identities=21% Similarity=0.305 Sum_probs=26.9
Q ss_pred ccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCcccceEEeCc
Q 016204 49 PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSG 99 (393)
Q Consensus 49 pga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~~~~~iits~ 99 (393)
||+.++|+.|++. ++++++||++.. +...|+...- +.|+++.
T Consensus 116 ~gv~~~L~~L~~~-~~l~i~Tn~~~~-------~~~~gl~~~f-d~i~~~~ 157 (238)
T PRK10748 116 QATHDTLKQLAKK-WPLVAITNGNAQ-------PELFGLGDYF-EFVLRAG 157 (238)
T ss_pred ccHHHHHHHHHcC-CCEEEEECCCch-------HHHCCcHHhh-ceeEecc
Confidence 6777788888764 788888885533 2445664443 6666654
No 190
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=97.33 E-value=0.00055 Score=62.22 Aligned_cols=51 Identities=24% Similarity=0.436 Sum_probs=39.6
Q ss_pred cCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCcccceEEeCch
Q 016204 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (393)
Q Consensus 46 ~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~~~~~iits~~ 100 (393)
+++||+.++|++|+++ ++++++||+.+. .....++.+|+...- +.++++..
T Consensus 97 ~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~--~~~~~l~~~~l~~~f-d~i~~~~~ 147 (224)
T TIGR02254 97 QLLPGAFELMENLQQK-FRLYIVTNGVRE--TQYKRLRKSGLFPFF-DDIFVSED 147 (224)
T ss_pred eeCccHHHHHHHHHhc-CcEEEEeCCchH--HHHHHHHHCCcHhhc-CEEEEcCc
Confidence 5679999999999999 999999987643 334456778887664 88887754
No 191
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=97.31 E-value=0.00048 Score=62.78 Aligned_cols=40 Identities=28% Similarity=0.320 Sum_probs=26.8
Q ss_pred cCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCc
Q 016204 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (393)
Q Consensus 46 ~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~ 90 (393)
.++||+.++|+.| ++++.++||+++. .....|..+|+...
T Consensus 88 ~~~~gv~~~L~~L---~~~~~ivTn~~~~--~~~~~l~~~~l~~~ 127 (221)
T PRK10563 88 EPIAGANALLESI---TVPMCVVSNGPVS--KMQHSLGKTGMLHY 127 (221)
T ss_pred CcCCCHHHHHHHc---CCCEEEEeCCcHH--HHHHHHHhcChHHh
Confidence 3567888888887 4899999986543 23345666677543
No 192
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.16 E-value=0.001 Score=59.43 Aligned_cols=58 Identities=22% Similarity=0.144 Sum_probs=44.8
Q ss_pred CCcEEEEeccccccC-CCcCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCC
Q 016204 29 RFKAWLLDQFGVLHD-GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (393)
Q Consensus 29 ~~k~i~~DlDGtL~~-g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~ 89 (393)
.+.+||.|+||||+. +-.+ .-|...+.+|++.|.+|+++| |....+....-..+|++.
T Consensus 6 ~~~lIFtDlD~TLl~~~ye~-~pA~pv~~el~d~G~~Vi~~S--SKT~aE~~~l~~~l~v~~ 64 (274)
T COG3769 6 MPLLIFTDLDGTLLPHSYEW-QPAAPVLLELKDAGVPVILCS--SKTRAEMLYLQKSLGVQG 64 (274)
T ss_pred cceEEEEcccCcccCCCCCC-CccchHHHHHHHcCCeEEEec--cchHHHHHHHHHhcCCCC
Confidence 578999999999998 2222 238899999999999999999 665555554445678764
No 193
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.15 E-value=0.001 Score=74.25 Aligned_cols=52 Identities=23% Similarity=0.416 Sum_probs=38.5
Q ss_pred CCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCcccceEEeCch
Q 016204 47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (393)
Q Consensus 47 ~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~~~~~iits~~ 100 (393)
++||+.++|+.|+++|++++++||+.+.. ....|+.+|+....++.++++..
T Consensus 162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~--~~~~L~~~gl~~~~Fd~iv~~~~ 213 (1057)
T PLN02919 162 GFPGALELITQCKNKGLKVAVASSADRIK--VDANLAAAGLPLSMFDAIVSADA 213 (1057)
T ss_pred cCccHHHHHHHHHhCCCeEEEEeCCcHHH--HHHHHHHcCCChhHCCEEEECcc
Confidence 47899999999999999999999875433 33446677875322477887754
No 194
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=97.13 E-value=0.0079 Score=52.26 Aligned_cols=69 Identities=12% Similarity=0.154 Sum_probs=52.4
Q ss_pred cccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCcccCCCCccccCChh
Q 016204 302 RWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATELGLDSYGEVADLS 371 (393)
Q Consensus 302 ~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~~~~~~~~~i~~~~ 371 (393)
..-+|-....|..++...|++|.+++++-|+ ...+.+|+.+|+.++++.-....+-...+...+++|++
T Consensus 156 tiG~KrE~~SY~kIa~~iGl~p~eilFLSDn-~~EL~AA~~vGl~t~l~~R~g~~P~~d~~~~~~~~sf~ 224 (229)
T COG4229 156 TIGKKRESQSYAKIAGDIGLPPAEILFLSDN-PEELKAAAGVGLATGLAVRPGNAPVPDGQGFLVYKSFE 224 (229)
T ss_pred cccccccchhHHHHHHhcCCCchheEEecCC-HHHHHHHHhcchheeeeecCCCCCCCCCcCceeeechh
Confidence 4456778889999999999999999999999 69999999999999987643222221123344555655
No 195
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=97.08 E-value=0.0012 Score=56.56 Aligned_cols=41 Identities=22% Similarity=0.325 Sum_probs=35.7
Q ss_pred EEEEeccccccCCC------------cCCccHHHHHHHHHHCCCeEEEEcCCCCC
Q 016204 32 AWLLDQFGVLHDGK------------KPYPGAISTLEMLATTGAKMVVISNSSRR 74 (393)
Q Consensus 32 ~i~~DlDGtL~~g~------------~~ipga~eal~~L~~~G~~v~~~TN~~~~ 74 (393)
.|++|+||||+..+ ..-||+.++.++++++|++++.+| +|+
T Consensus 1 VVvsDIDGTiT~SD~~G~i~~~~G~d~~h~g~~~l~~~i~~~GY~ilYlT--aRp 53 (157)
T PF08235_consen 1 VVVSDIDGTITKSDVLGHILPILGKDWTHPGAAELYRKIADNGYKILYLT--ARP 53 (157)
T ss_pred CEEEeccCCcCccchhhhhhhccCchhhhhcHHHHHHHHHHCCeEEEEEC--cCc
Confidence 37999999999864 355999999999999999999999 554
No 196
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=97.04 E-value=0.0015 Score=58.68 Aligned_cols=39 Identities=26% Similarity=0.480 Sum_probs=29.5
Q ss_pred CCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCC
Q 016204 47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (393)
Q Consensus 47 ~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~ 88 (393)
++||+.++|+.|+++ ++++++||+.+.. ....+..+|++
T Consensus 69 ~~pg~~e~L~~L~~~-~~~~IvS~~~~~~--~~~~l~~~gl~ 107 (205)
T PRK13582 69 PLPGAVEFLDWLRER-FQVVILSDTFYEF--AGPLMRQLGWP 107 (205)
T ss_pred CCCCHHHHHHHHHhc-CCEEEEeCCcHHH--HHHHHHHcCCc
Confidence 469999999999999 9999999876543 22344556764
No 197
>PRK10671 copA copper exporting ATPase; Provisional
Probab=96.92 E-value=0.0055 Score=67.09 Aligned_cols=60 Identities=17% Similarity=0.035 Sum_probs=42.8
Q ss_pred HHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCcccCCCCcc--ccCChhHHHHHHH
Q 016204 315 AMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATELGLDSYG--EVADLSSVQTLVS 378 (393)
Q Consensus 315 ~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~~~~~~~~--~i~~~~~l~~~l~ 378 (393)
++++++..+++++||||+ .||+.++++||+ ++.+|.++......++. ..+++..+..+++
T Consensus 704 ~i~~l~~~~~~v~~vGDg-~nD~~al~~Agv---gia~g~g~~~a~~~ad~vl~~~~~~~i~~~i~ 765 (834)
T PRK10671 704 AIKRLQSQGRQVAMVGDG-INDAPALAQADV---GIAMGGGSDVAIETAAITLMRHSLMGVADALA 765 (834)
T ss_pred HHHHHhhcCCEEEEEeCC-HHHHHHHHhCCe---eEEecCCCHHHHHhCCEEEecCCHHHHHHHHH
Confidence 334445557799999999 799999999999 55566555444434444 4568888888775
No 198
>PRK11590 hypothetical protein; Provisional
Probab=96.89 E-value=0.0015 Score=59.22 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=21.1
Q ss_pred CCccHHHHH-HHHHHCCCeEEEEcCCCCC
Q 016204 47 PYPGAISTL-EMLATTGAKMVVISNSSRR 74 (393)
Q Consensus 47 ~ipga~eal-~~L~~~G~~v~~~TN~~~~ 74 (393)
++||+.+.| ++|++.|++++++||+.+.
T Consensus 96 ~~pga~e~L~~~l~~~G~~l~IvSas~~~ 124 (211)
T PRK11590 96 AFPVVQERLTTYLLSSDADVWLITGSPQP 124 (211)
T ss_pred CCccHHHHHHHHHHhCCCEEEEEeCCcHH
Confidence 368888888 5677788888888866543
No 199
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=96.77 E-value=0.0021 Score=56.80 Aligned_cols=47 Identities=23% Similarity=0.402 Sum_probs=26.7
Q ss_pred CCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCcccceEEeCc
Q 016204 47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSG 99 (393)
Q Consensus 47 ~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~~~~~iits~ 99 (393)
+.||+.++|++|+ .+++++||+++. .....+..+|+... ++.++++.
T Consensus 85 ~~~g~~~~L~~L~---~~~~i~Tn~~~~--~~~~~l~~~gl~~~-fd~i~~~~ 131 (184)
T TIGR01993 85 PDPELRNLLLRLP---GRKIIFTNGDRA--HARRALNRLGIEDC-FDGIFCFD 131 (184)
T ss_pred CCHHHHHHHHhCC---CCEEEEeCCCHH--HHHHHHHHcCcHhh-hCeEEEee
Confidence 4567777777765 367777766543 23344455666433 35666553
No 200
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=96.74 E-value=0.0025 Score=57.90 Aligned_cols=28 Identities=21% Similarity=0.393 Sum_probs=23.5
Q ss_pred CCccHHHHHH-HHHHCCCeEEEEcCCCCC
Q 016204 47 PYPGAISTLE-MLATTGAKMVVISNSSRR 74 (393)
Q Consensus 47 ~ipga~eal~-~L~~~G~~v~~~TN~~~~ 74 (393)
+.||+.+.|+ +++++|++++++||+.+.
T Consensus 95 l~pga~e~L~~~l~~~G~~v~IvSas~~~ 123 (210)
T TIGR01545 95 AFPLVAERLRQYLESSDADIWLITGSPQP 123 (210)
T ss_pred CCccHHHHHHHHHHhCCCEEEEEcCCcHH
Confidence 4699999995 888899999999977544
No 201
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=96.66 E-value=0.023 Score=52.33 Aligned_cols=45 Identities=9% Similarity=-0.012 Sum_probs=30.1
Q ss_pred cHHHHHHHHHHhCCC---CCcEEEEecCchhhHHHHHHcCCe-----EEEEcCC
Q 016204 308 DKIIYKSAMAMVGVD---ACDSIAVGDSLHHDIKGANAAGIQ-----SVFIIGG 353 (393)
Q Consensus 308 ~p~~~~~~~~~lgi~---~~~~v~VGDsl~~Di~~a~~aG~~-----~i~v~~G 353 (393)
+....+.++++++.. +.-++++||. .+|-.+.+.+.-. ++.|.++
T Consensus 166 KG~av~~ll~~~~~~~~~~~~~l~~GDD-~tDE~~f~~~~~~~~~~~~i~V~~~ 218 (235)
T PF02358_consen 166 KGSAVRRLLEELPFAGPKPDFVLYIGDD-RTDEDAFRALRELEEGGFGIKVGSV 218 (235)
T ss_dssp HHHHHHHHHTTS---------EEEEESS-HHHHHHHHTTTTS----EEEEES--
T ss_pred hHHHHHHHHHhcCccccccceeEEecCC-CCCHHHHHHHHhcccCCCCeEEEee
Confidence 467888888888765 7789999999 7999999887654 5566554
No 202
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=96.55 E-value=0.0029 Score=56.45 Aligned_cols=28 Identities=32% Similarity=0.636 Sum_probs=21.6
Q ss_pred CcCCccHHHHHHHHHHCCCeEEEEcCCC
Q 016204 45 KKPYPGAISTLEMLATTGAKMVVISNSS 72 (393)
Q Consensus 45 ~~~ipga~eal~~L~~~G~~v~~~TN~~ 72 (393)
-.++|||+|+|++|.+.|..++++|..+
T Consensus 72 l~p~~gA~e~l~~L~~~g~~~~~Itar~ 99 (191)
T PF06941_consen 72 LPPIPGAVEALKKLRDKGHEIVIITARP 99 (191)
T ss_dssp --B-TTHHHHHHHHHTSTTEEEEEEE-S
T ss_pred CCccHHHHHHHHHHHHcCCcEEEEEecC
Confidence 3678999999999999998888888543
No 203
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=96.48 E-value=0.0078 Score=64.90 Aligned_cols=57 Identities=18% Similarity=0.113 Sum_probs=39.6
Q ss_pred CCcEEEEecccc----ccCCCcCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCC
Q 016204 29 RFKAWLLDQFGV----LHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGF 87 (393)
Q Consensus 29 ~~k~i~~DlDGt----L~~g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~ 87 (393)
....+.+=.||+ +.-.+++.|++.++|++|+++|++++++|+..... .....+++|+
T Consensus 547 g~~~v~va~~~~~~g~i~l~d~~r~~a~~~i~~L~~~gi~~~llTGd~~~~--a~~ia~~lgi 607 (741)
T PRK11033 547 GKTVVLVLRNDDVLGLIALQDTLRADARQAISELKALGIKGVMLTGDNPRA--AAAIAGELGI 607 (741)
T ss_pred CCEEEEEEECCEEEEEEEEecCCchhHHHHHHHHHHCCCEEEEEcCCCHHH--HHHHHHHcCC
Confidence 345666666665 44577888999999999999999999999643332 2233344565
No 204
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=96.47 E-value=0.027 Score=62.30 Aligned_cols=62 Identities=18% Similarity=0.100 Sum_probs=41.9
Q ss_pred HHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCcccCCCCccccCC--hhHHHHHHH
Q 016204 313 KSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATELGLDSYGEVAD--LSSVQTLVS 378 (393)
Q Consensus 313 ~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~~~~~~~~~i~~--~~~l~~~l~ 378 (393)
..+++.++-..+.+.|+||+ .||+.|.+.|++ ++..|.+.......++.++.+ |..+.+++.
T Consensus 620 ~~iV~~lq~~g~~va~iGDG-~ND~~alk~AdV---Gia~g~g~~~ak~aAD~vl~dd~f~~i~~~i~ 683 (917)
T TIGR01116 620 SELVELLQEQGEIVAMTGDG-VNDAPALKKADI---GIAMGSGTEVAKEASDMVLADDNFATIVAAVE 683 (917)
T ss_pred HHHHHHHHhcCCeEEEecCC-cchHHHHHhCCe---eEECCCCcHHHHHhcCeEEccCCHHHHHHHHH
Confidence 33444444445678899999 799999999999 333443333333467888865 888887654
No 205
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=96.43 E-value=0.25 Score=53.80 Aligned_cols=53 Identities=19% Similarity=0.228 Sum_probs=40.0
Q ss_pred CCcEEEEeccccccCC---------CcCCccHHHHHHHHHHC-CCeEEEEcCCCCCchHHHHHHH
Q 016204 29 RFKAWLLDQFGVLHDG---------KKPYPGAISTLEMLATT-GAKMVVISNSSRRASTTIDKLK 83 (393)
Q Consensus 29 ~~k~i~~DlDGtL~~g---------~~~ipga~eal~~L~~~-G~~v~~~TN~~~~~~~~~~~l~ 83 (393)
+-++++||.||||..- -.+.|+..++|+.|.+. +-.|+++| +|..+.+.+.|.
T Consensus 506 ~~rll~LDyDGTL~~~~~~~~~p~~a~p~~~l~~~L~~L~~d~~~~V~IvS--GR~~~~L~~~~~ 568 (797)
T PLN03063 506 NNRLLILGFYGTLTEPRNSQIKEMDLGLHPELKETLKALCSDPKTTVVVLS--RSGKDILDKNFG 568 (797)
T ss_pred cCeEEEEecCccccCCCCCccccccCCCCHHHHHHHHHHHcCCCCEEEEEe--CCCHHHHHHHhC
Confidence 3489999999999853 12457899999999875 67899999 666666655553
No 206
>PLN02954 phosphoserine phosphatase
Probab=96.41 E-value=0.041 Score=50.00 Aligned_cols=49 Identities=16% Similarity=0.015 Sum_probs=29.1
Q ss_pred hcccEEEEecCCccccCHHHHHHHHHHHhcCCCCChHHHHHHHhCCCchHHH
Q 016204 231 RMTDLILFDLKNFNLVSVDIIYSSHKLLSRNFSISKNFTFRNFIGLPFVYEC 282 (393)
Q Consensus 231 ~M~k~iiFD~DGTL~ds~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~ 282 (393)
..+|+|+|||||||+|+.... ..+..++......+......+.++...+
T Consensus 10 ~~~k~viFDfDGTL~~~~~~~---~~~~~~g~~~~~~~~~~~~~~g~~~~~~ 58 (224)
T PLN02954 10 RSADAVCFDVDSTVCVDEGID---ELAEFCGAGEAVAEWTAKAMGGSVPFEE 58 (224)
T ss_pred ccCCEEEEeCCCcccchHHHH---HHHHHcCChHHHHHHHHHHHCCCCCHHH
Confidence 348999999999999984431 1334444443334445555554444433
No 207
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=96.34 E-value=0.0056 Score=55.61 Aligned_cols=28 Identities=18% Similarity=0.194 Sum_probs=25.1
Q ss_pred cCCccHHHHHHHHHHCCCeEEEEcCCCC
Q 016204 46 KPYPGAISTLEMLATTGAKMVVISNSSR 73 (393)
Q Consensus 46 ~~ipga~eal~~L~~~G~~v~~~TN~~~ 73 (393)
.+.||+.++|+.|+++|++++++||+.+
T Consensus 70 ~l~pg~~e~l~~l~~~g~~~~IvS~~~~ 97 (214)
T TIGR03333 70 EIREGFREFVAFINEHGIPFYVISGGMD 97 (214)
T ss_pred cccccHHHHHHHHHHCCCeEEEECCCcH
Confidence 5679999999999999999999998754
No 208
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=96.32 E-value=0.0076 Score=54.94 Aligned_cols=30 Identities=20% Similarity=0.317 Sum_probs=26.7
Q ss_pred cCCccHHHHHHHHHHCCCeEEEEcCCCCCc
Q 016204 46 KPYPGAISTLEMLATTGAKMVVISNSSRRA 75 (393)
Q Consensus 46 ~~ipga~eal~~L~~~G~~v~~~TN~~~~~ 75 (393)
...|||.+.++.|+.+|+++.++|+.++.+
T Consensus 92 ~~~PGa~kLv~~L~~~gip~alat~s~~~~ 121 (222)
T KOG2914|consen 92 ILMPGAEKLVNHLKNNGIPVALATSSTSAS 121 (222)
T ss_pred ccCCcHHHHHHHHHhCCCCeeEEecCCccc
Confidence 457999999999999999999999876655
No 209
>COG4996 Predicted phosphatase [General function prediction only]
Probab=96.15 E-value=0.01 Score=48.76 Aligned_cols=58 Identities=21% Similarity=0.240 Sum_probs=44.4
Q ss_pred cEEEEeccccccCCC-------------------------cCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhC
Q 016204 31 KAWLLDQFGVLHDGK-------------------------KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSL 85 (393)
Q Consensus 31 k~i~~DlDGtL~~g~-------------------------~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~l 85 (393)
++++||+|||||+-. ++.|..+++++.+|..|.-+-.+|=| ......+.|+.+
T Consensus 1 ~~i~~d~d~t~wdhh~iSsl~pPf~rVs~n~i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN--~~~kA~~aLral 78 (164)
T COG4996 1 RAIVFDADKTLWDHHNISSLEPPFRRVSSNTIEDSKGREVHLFPDVKETLKWARNSGYILGLASWN--FEDKAIKALRAL 78 (164)
T ss_pred CcEEEeCCCcccccccchhcCCcceecCccceecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecC--chHHHHHHHHHh
Confidence 378999999999821 45799999999999999888777744 334556667777
Q ss_pred CCCCc
Q 016204 86 GFDPS 90 (393)
Q Consensus 86 G~~~~ 90 (393)
|+...
T Consensus 79 ~~~~y 83 (164)
T COG4996 79 DLLQY 83 (164)
T ss_pred chhhh
Confidence 77544
No 210
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=96.14 E-value=0.43 Score=44.78 Aligned_cols=52 Identities=25% Similarity=0.237 Sum_probs=38.6
Q ss_pred CCcEEEEeccccccCC------CcCCccHHHHHHHHHHCCC-eEEEEcCCCCCchHHHHHH
Q 016204 29 RFKAWLLDQFGVLHDG------KKPYPGAISTLEMLATTGA-KMVVISNSSRRASTTIDKL 82 (393)
Q Consensus 29 ~~k~i~~DlDGtL~~g------~~~ipga~eal~~L~~~G~-~v~~~TN~~~~~~~~~~~l 82 (393)
+.+++++|.||||... ..+.++..++|++|.+... .++++| +|+.+.+...+
T Consensus 17 ~~~~~~lDyDGTl~~i~~~p~~a~~~~~l~~lL~~Las~~~~~v~iiS--GR~~~~l~~~~ 75 (266)
T COG1877 17 RKRLLFLDYDGTLTEIVPHPEAAVPDDRLLSLLQDLASDPRNVVAIIS--GRSLAELERLF 75 (266)
T ss_pred cceEEEEeccccccccccCccccCCCHHHHHHHHHHHhcCCCeEEEEe--CCCHHHHHHhc
Confidence 5689999999999873 2345689999999999854 578888 66655544433
No 211
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=96.02 E-value=0.13 Score=56.91 Aligned_cols=65 Identities=18% Similarity=0.197 Sum_probs=44.1
Q ss_pred EeccccccCCCcCCccHHHHHHHHH----HCCCeEEEEcCCCCCchHHHHHHHhCCCCCcccceEEeCchhHHHH
Q 016204 35 LDQFGVLHDGKKPYPGAISTLEMLA----TTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQY 105 (393)
Q Consensus 35 ~DlDGtL~~g~~~ipga~eal~~L~----~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~~~~~iits~~~~~~~ 105 (393)
+|+|.| .| ..+..++.++.++ +..+-++++| +|....+.+.|++.|++...++.+|++.+.-..|
T Consensus 777 ~D~d~~--~~--~~~~l~~~~~~~~~~~~~~~igfv~aT--GR~l~~~~~~l~~~~lp~~~PD~lI~~vGTeIyy 845 (1050)
T TIGR02468 777 VDCYDD--KD--LLQIIKNIFEAVRKERMEGSSGFILST--SMTISEIQSFLKSGGLNPTDFDALICNSGSELYY 845 (1050)
T ss_pred eccCCC--CC--hHHHHHHHHHHHhccccCCceEEEEEc--CCCHHHHHHHHHhCCCCCCCCCEEEeCCCcceec
Confidence 799999 22 2233445555665 2236778888 8888888899999999853348888876544444
No 212
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=96.01 E-value=0.0027 Score=58.91 Aligned_cols=35 Identities=9% Similarity=-0.032 Sum_probs=28.0
Q ss_pred HHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCC
Q 016204 310 IIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGI 345 (393)
Q Consensus 310 ~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~ 345 (393)
..+..++++++++++++++|||+ ..|++.....|.
T Consensus 82 ~~l~~~~~~~~~~~~~~~~vGd~-~~d~~~~~~~~~ 116 (242)
T TIGR01459 82 QMILESKKRFDIRNGIIYLLGHL-ENDIINLMQCYT 116 (242)
T ss_pred HHHHhhhhhccCCCceEEEeCCc-ccchhhhcCCCc
Confidence 46667778888999999999999 789987765554
No 213
>PLN02645 phosphoglycolate phosphatase
Probab=95.90 E-value=0.031 Score=53.92 Aligned_cols=38 Identities=11% Similarity=0.010 Sum_probs=28.2
Q ss_pred HHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEE
Q 016204 311 IYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVF 349 (393)
Q Consensus 311 ~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~ 349 (393)
.....++..+....+.++++++ ..+.+.++.+|+.++.
T Consensus 99 ~~~~~l~~~~~~~~~~V~viG~-~~~~~~l~~~Gi~~~~ 136 (311)
T PLN02645 99 AAAAYLKSINFPKDKKVYVIGE-EGILEELELAGFQYLG 136 (311)
T ss_pred HHHHHHHhhccCCCCEEEEEcC-HHHHHHHHHCCCEEec
Confidence 4455556556554556888888 7999999999998764
No 214
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=95.78 E-value=0.034 Score=52.22 Aligned_cols=31 Identities=10% Similarity=0.074 Sum_probs=25.0
Q ss_pred CCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHH
Q 016204 305 GKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGA 340 (393)
Q Consensus 305 gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a 340 (393)
.++++.-++.+.+.+++ +++|||+ .+|+...
T Consensus 174 ~~~K~~rr~~I~~~y~I----vl~vGD~-~~Df~~~ 204 (266)
T TIGR01533 174 KSSKESRRQKVQKDYEI----VLLFGDN-LLDFDDF 204 (266)
T ss_pred CCCcHHHHHHHHhcCCE----EEEECCC-HHHhhhh
Confidence 35667888888887777 9999999 6999754
No 215
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=95.65 E-value=0.23 Score=43.48 Aligned_cols=38 Identities=16% Similarity=0.148 Sum_probs=26.7
Q ss_pred ccccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCC
Q 016204 301 VRWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGI 345 (393)
Q Consensus 301 ~~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~ 345 (393)
..+.-||. .+.. +.-+++.++|.||+ ..|+.+|+....
T Consensus 143 ~fG~dK~~--vI~~----l~e~~e~~fy~GDs-vsDlsaaklsDl 180 (220)
T COG4359 143 QFGHDKSS--VIHE----LSEPNESIFYCGDS-VSDLSAAKLSDL 180 (220)
T ss_pred ccCCCcch--hHHH----hhcCCceEEEecCC-cccccHhhhhhh
Confidence 34555654 4444 34455779999999 799999987654
No 216
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=95.56 E-value=0.0077 Score=51.88 Aligned_cols=51 Identities=27% Similarity=0.339 Sum_probs=36.1
Q ss_pred cEEEEeccccccCCCc--------------------CCccHHHHHHHHHHCCCeEEEEcCCCCCc-hHHHHHH
Q 016204 31 KAWLLDQFGVLHDGKK--------------------PYPGAISTLEMLATTGAKMVVISNSSRRA-STTIDKL 82 (393)
Q Consensus 31 k~i~~DlDGtL~~g~~--------------------~ipga~eal~~L~~~G~~v~~~TN~~~~~-~~~~~~l 82 (393)
|+++||+||||+.... .=||+.++|+.|.+. ..+++.|.+++.. ..+.+.+
T Consensus 1 k~LVlDLD~TLv~~~~~~~~~~~~~~~~~~~~~~v~~RP~l~~FL~~l~~~-~ev~i~T~~~~~ya~~v~~~l 72 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPLPYDFKIIDQRGGYYVKLRPGLDEFLEELSKH-YEVVIWTSASEEYAEPVLDAL 72 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCTT-SEEEETEEEEEEEEE-TTHHHHHHHHHHH-CEEEEE-SS-HHHHHHHHHHH
T ss_pred CEEEEeCCCcEEEEeecCCCCcccceeccccceeEeeCchHHHHHHHHHHh-ceEEEEEeehhhhhhHHHHhh
Confidence 5899999999997432 239999999999555 9999999776444 4555555
No 217
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=95.49 E-value=0.11 Score=52.58 Aligned_cols=42 Identities=19% Similarity=0.305 Sum_probs=31.7
Q ss_pred HHHHHHHhCCCCCcEEEEecCchhhHHHHHHc-CCeEEEEcCC
Q 016204 312 YKSAMAMVGVDACDSIAVGDSLHHDIKGANAA-GIQSVFIIGG 353 (393)
Q Consensus 312 ~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~a-G~~~i~v~~G 353 (393)
+..+.+.+|...+++++|||++..||...+.. ||+|++|-..
T Consensus 284 ~~~l~~ll~~~g~~VLY~GDhi~~Di~~~k~~~gWrT~~Ii~E 326 (448)
T PF05761_consen 284 WDQLHKLLGWRGKEVLYFGDHIYGDILKSKKRHGWRTAAIIPE 326 (448)
T ss_dssp HHHHHHHCT--GGGEEEEESSTTTTHHHHHHHH-SEEEEE-TT
T ss_pred HHHHHHHHccCCCeEEEECCchhhhhhhhccccceEEEEEehh
Confidence 44556667888889999999999999988776 9999999754
No 218
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=95.42 E-value=0.025 Score=50.57 Aligned_cols=51 Identities=35% Similarity=0.360 Sum_probs=40.0
Q ss_pred cCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCcccceEEeCch
Q 016204 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (393)
Q Consensus 46 ~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~~~~~iits~~ 100 (393)
.++||+.++|++|+++|++++++||+.+. ....+..+|+.... +.++++..
T Consensus 105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~---~~~~l~~~~l~~~f-d~i~~s~~ 155 (203)
T TIGR02252 105 QVYPDAIKLLKDLRERGLILGVISNFDSR---LRGLLEALGLLEYF-DFVVTSYE 155 (203)
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEeCCchh---HHHHHHHCCcHHhc-ceEEeecc
Confidence 57899999999999999999999987543 34556778886554 77877643
No 219
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=95.40 E-value=0.045 Score=51.13 Aligned_cols=74 Identities=20% Similarity=0.228 Sum_probs=57.4
Q ss_pred CCcEEEEeccccccCCCc----CCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCcccceEEeCchhHHH
Q 016204 29 RFKAWLLDQFGVLHDGKK----PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQ 104 (393)
Q Consensus 29 ~~k~i~~DlDGtL~~g~~----~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~~~~~iits~~~~~~ 104 (393)
....|+||+|-||.+... ..|...+.|.+|++.|.-+++=| ....+-+.+-|++++++.. ++.|++.|..+..
T Consensus 121 ~phVIVfDlD~TLItd~~~v~Ir~~~v~~sL~~Lk~~g~vLvLWS--yG~~eHV~~sl~~~~L~~~-Fd~ii~~G~~~~~ 197 (297)
T PF05152_consen 121 PPHVIVFDLDSTLITDEGDVRIRDPAVYDSLRELKEQGCVLVLWS--YGNREHVRHSLKELKLEGY-FDIIICGGNKAGE 197 (297)
T ss_pred CCcEEEEECCCcccccCCccccCChHHHHHHHHHHHcCCEEEEec--CCCHHHHHHHHHHhCCccc-cEEEEeCCccCCc
Confidence 678999999999997543 33789999999999999888888 5555566677778888855 5888877665554
Q ss_pred H
Q 016204 105 Y 105 (393)
Q Consensus 105 ~ 105 (393)
+
T Consensus 198 ~ 198 (297)
T PF05152_consen 198 Y 198 (297)
T ss_pred C
Confidence 3
No 220
>PRK11590 hypothetical protein; Provisional
Probab=95.35 E-value=0.015 Score=52.80 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=27.3
Q ss_pred ccEEEEecCCccccCHHHHHHHH--HH-HhcCCCCChHHHHHHHhCCCc
Q 016204 233 TDLILFDLKNFNLVSVDIIYSSH--KL-LSRNFSISKNFTFRNFIGLPF 278 (393)
Q Consensus 233 ~k~iiFD~DGTL~ds~~~~~~~~--~l-~~~~~~~~~~~~~~~~~g~~~ 278 (393)
.|+++||+||||++. .+..++ .+ .+.+........++..+|.++
T Consensus 6 ~k~~iFD~DGTL~~~--d~~~~~~~~~~~~~g~~~~~~~~~~~~ig~~l 52 (211)
T PRK11590 6 RRVVFFDLDGTLHQQ--DMFGSFLRYLLRRQPLNLLLVLPLLPVIGLGL 52 (211)
T ss_pred ceEEEEecCCCCccc--chHHHHHHHHHHhcchhhHHHhHHHHHhccCc
Confidence 378999999999933 344444 33 566655555455555555443
No 221
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=95.23 E-value=0.033 Score=48.04 Aligned_cols=53 Identities=17% Similarity=0.041 Sum_probs=39.8
Q ss_pred CCcEEEEeccccccCCC------------------------------------cCCccHHHHHHHHHHCCCeEEEEcCCC
Q 016204 29 RFKAWLLDQFGVLHDGK------------------------------------KPYPGAISTLEMLATTGAKMVVISNSS 72 (393)
Q Consensus 29 ~~k~i~~DlDGtL~~g~------------------------------------~~ipga~eal~~L~~~G~~v~~~TN~~ 72 (393)
+...+++|+|.||++.. ++.||+.++|+.|++. +.++++||++
T Consensus 5 ~kl~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~~-yel~I~T~~~ 83 (156)
T TIGR02250 5 KKLHLVLDLDQTLIHTTKDPTLSEWEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASKL-YEMHVYTMGT 83 (156)
T ss_pred CceEEEEeCCCCcccccccCccchhhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHhh-cEEEEEeCCc
Confidence 45678999999998721 1368999999999855 9999999887
Q ss_pred CCc-hHHHHHH
Q 016204 73 RRA-STTIDKL 82 (393)
Q Consensus 73 ~~~-~~~~~~l 82 (393)
+.. ..+++.+
T Consensus 84 ~~yA~~vl~~l 94 (156)
T TIGR02250 84 RAYAQAIAKLI 94 (156)
T ss_pred HHHHHHHHHHh
Confidence 665 3444443
No 222
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=95.10 E-value=0.022 Score=52.25 Aligned_cols=50 Identities=28% Similarity=0.311 Sum_probs=35.8
Q ss_pred CccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCcccceEEeCchh
Q 016204 48 YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGEL 101 (393)
Q Consensus 48 ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~~~~~iits~~~ 101 (393)
.++.++++++||++|..+.++||-.++.+ ..+..+|+... ++.++.|..+
T Consensus 115 ~~~~~~~lq~lR~~g~~l~iisN~d~r~~---~~l~~~~l~~~-fD~vv~S~e~ 164 (237)
T KOG3085|consen 115 LDGMQELLQKLRKKGTILGIISNFDDRLR---LLLLPLGLSAY-FDFVVESCEV 164 (237)
T ss_pred ccHHHHHHHHHHhCCeEEEEecCCcHHHH---HHhhccCHHHh-hhhhhhhhhh
Confidence 46888999999999988888888665554 33445666633 4777777533
No 223
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=94.92 E-value=0.017 Score=52.42 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=16.6
Q ss_pred hcccEEEEecCCccccCHH
Q 016204 231 RMTDLILFDLKNFNLVSVD 249 (393)
Q Consensus 231 ~M~k~iiFD~DGTL~ds~~ 249 (393)
.|+|+++|||||||+++..
T Consensus 12 ~~~k~iiFD~DGTL~~~~~ 30 (219)
T TIGR00338 12 RSKKLVVFDMDSTLINAET 30 (219)
T ss_pred ccCCEEEEeCcccCCCchH
Confidence 4689999999999999853
No 224
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=94.70 E-value=1.3 Score=41.04 Aligned_cols=47 Identities=23% Similarity=0.357 Sum_probs=36.7
Q ss_pred CCeEEEEcCCCCCc-hHHHHHHHhCCCCCcccceEEeCchhHHHHHHccc
Q 016204 62 GAKMVVISNSSRRA-STTIDKLKSLGFDPSLFAGAITSGELTHQYLLRRD 110 (393)
Q Consensus 62 G~~v~~~TN~~~~~-~~~~~~l~~lG~~~~~~~~iits~~~~~~~l~~~~ 110 (393)
-+.|+++|+|+..+ -.+..-++..|+++. -.++|++.....|+...+
T Consensus 36 ~VEVVllSRNspdTGlRv~nSI~hygL~It--R~~ft~G~~~~~Yl~af~ 83 (264)
T PF06189_consen 36 LVEVVLLSRNSPDTGLRVFNSIRHYGLDIT--RAAFTGGESPYPYLKAFN 83 (264)
T ss_pred ceEEEEEecCCHHHHHHHHHhHHHhCCcce--eeeecCCCCHHHHHHHhC
Confidence 45679999987655 466667778898877 489999999999998764
No 225
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=94.05 E-value=0.32 Score=41.92 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=25.9
Q ss_pred cHHHHHHHHHHhCCCCCcEE-EEecCchhhHHHHHHcCCeE
Q 016204 308 DKIIYKSAMAMVGVDACDSI-AVGDSLHHDIKGANAAGIQS 347 (393)
Q Consensus 308 ~p~~~~~~~~~lgi~~~~~v-~VGDsl~~Di~~a~~aG~~~ 347 (393)
+.+.+..+.+.+.-.....+ .+||+ .+|+++=+++|+..
T Consensus 103 K~~~l~~i~~~~~~~~~~f~~~~gn~-~~D~~~y~~~gi~~ 142 (157)
T smart00775 103 KIACLRDIKSLFPPQGNPFYAGFGNR-ITDVISYSAVGIPP 142 (157)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCC-chhHHHHHHcCCCh
Confidence 34455555555432222344 59999 79999999999864
No 226
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=93.21 E-value=0.67 Score=43.28 Aligned_cols=43 Identities=23% Similarity=0.336 Sum_probs=34.4
Q ss_pred ccHHHHHHHHHHCCCeEEEEcCCCCCc-hHHHHHHHhCCCCCcc
Q 016204 49 PGAISTLEMLATTGAKMVVISNSSRRA-STTIDKLKSLGFDPSL 91 (393)
Q Consensus 49 pga~eal~~L~~~G~~v~~~TN~~~~~-~~~~~~l~~lG~~~~~ 91 (393)
+..++.|+.|+.+|++++-+|..+... ....+.|.++|++...
T Consensus 84 ~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~ 127 (252)
T PF11019_consen 84 SDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGIDFSS 127 (252)
T ss_pred hhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCCccc
Confidence 578899999999999999999655444 3567888899987554
No 227
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=93.20 E-value=0.42 Score=44.03 Aligned_cols=46 Identities=24% Similarity=0.183 Sum_probs=36.1
Q ss_pred HHHHHHHHHHh---CCCCCcEEEEecCchhhHHHHHHcCC-eEEEEcCCCC
Q 016204 309 KIIYKSAMAMV---GVDACDSIAVGDSLHHDIKGANAAGI-QSVFIIGGIH 355 (393)
Q Consensus 309 p~~~~~~~~~l---gi~~~~~v~VGDsl~~Di~~a~~aG~-~~i~v~~G~~ 355 (393)
...++..++.. |..-++++||||. .||+=.+.+.+- ..++.+-|+.
T Consensus 152 ~~il~~~~~~~~~~g~~~~rviYiGDG-~nD~Cp~~~L~~~D~v~~R~~~~ 201 (234)
T PF06888_consen 152 GKILERLLQEQAQRGVPYDRVIYIGDG-RNDFCPALRLRPRDVVFPRKGYP 201 (234)
T ss_pred HHHHHHHHHHHhhcCCCcceEEEECCC-CCCcCcccccCCCCEEecCCCCh
Confidence 45777777663 6778999999999 899999988664 5777887765
No 228
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=93.08 E-value=0.32 Score=44.79 Aligned_cols=49 Identities=20% Similarity=0.314 Sum_probs=33.6
Q ss_pred CCccHHHHHHHH--HHCCCeEEEEcCCCCCchHHHHHHHhCCCCCcccceEEeC
Q 016204 47 PYPGAISTLEML--ATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITS 98 (393)
Q Consensus 47 ~ipga~eal~~L--~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~~~~~iits 98 (393)
+.||.+++++.+ ++.|..++++|++- +--+-..|+..|+.... ..|+|.
T Consensus 72 ~~pgm~~~l~~l~~~~~~~~~~IiSDaN--s~fI~~iL~~~gl~~~f-~~I~TN 122 (234)
T PF06888_consen 72 IDPGMKELLRFLAKNQRGFDLIIISDAN--SFFIETILEHHGLRDCF-SEIFTN 122 (234)
T ss_pred CCccHHHHHHHHHhcCCCceEEEEeCCc--HhHHHHHHHhCCCcccc-ceEEeC
Confidence 458999999999 45799999999632 22334456677886543 666654
No 229
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=92.78 E-value=0.17 Score=47.93 Aligned_cols=36 Identities=14% Similarity=0.045 Sum_probs=22.6
Q ss_pred HHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEE
Q 016204 311 IYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSV 348 (393)
Q Consensus 311 ~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i 348 (393)
.....+++......+++++|+. ...+..+.+|+..+
T Consensus 73 ~~~~~l~~~~~~~~~v~~iG~~--~~~~~l~~~g~~~~ 108 (279)
T TIGR01452 73 CAARLLRQPPDAPKAVYVIGEE--GLRAELDAAGIRLA 108 (279)
T ss_pred HHHHHHHhhCcCCCEEEEEcCH--HHHHHHHHCCCEEe
Confidence 3333444443445679999986 44566777888754
No 230
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=92.69 E-value=1.2 Score=49.61 Aligned_cols=49 Identities=12% Similarity=0.181 Sum_probs=35.3
Q ss_pred ccccCCCcCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCC
Q 016204 39 GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (393)
Q Consensus 39 GtL~~g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~ 89 (393)
|.+.-.+.+-|+++++|++|++.|++++++|+....+ ....-+++|+..
T Consensus 572 Gli~~~Dplr~~~~~aI~~l~~aGI~v~miTGD~~~t--A~~iA~~~GI~~ 620 (941)
T TIGR01517 572 GVVGIKDPLRPGVREAVQECQRAGITVRMVTGDNIDT--AKAIARNCGILT 620 (941)
T ss_pred EEeeccCCCchhHHHHHHHHHHCCCEEEEECCCChHH--HHHHHHHcCCCC
Confidence 4444566777999999999999999999999644333 223334578753
No 231
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=92.63 E-value=0.82 Score=45.25 Aligned_cols=120 Identities=13% Similarity=0.107 Sum_probs=69.4
Q ss_pred cCCCcCC--ccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCcccceEEeC-chhHHHHHHcccchhhhhcC
Q 016204 42 HDGKKPY--PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITS-GELTHQYLLRRDDAWFAALG 118 (393)
Q Consensus 42 ~~g~~~i--pga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~~~~~iits-~~~~~~~l~~~~~~~~~~~g 118 (393)
+.|.+++ |...+.++++++.|+.+.+.||...-+.+.++.|.+.|++... --+-+ .....+.+.... ..|..+
T Consensus 68 ~~GGEPll~~~~~~il~~~~~~g~~~~i~TNG~ll~~~~~~~L~~~g~~~v~--iSldg~~~e~~d~irg~~-g~f~~~- 143 (378)
T PRK05301 68 FSGGEPLLRKDLEELVAHARELGLYTNLITSGVGLTEARLAALKDAGLDHIQ--LSFQDSDPELNDRLAGTK-GAFAKK- 143 (378)
T ss_pred EECCccCCchhHHHHHHHHHHcCCcEEEECCCccCCHHHHHHHHHcCCCEEE--EEecCCCHHHHHHHcCCC-chHHHH-
Confidence 3345554 7899999999999999999999877777788888888874111 11111 112222222111 001000
Q ss_pred CeEEEEccCCccccccccCCceeeCCccCcCEEEecCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEeecC
Q 016204 119 RSCIHMTWSDRGAISLEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKIPMVVANP 193 (393)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 193 (393)
-+....+++.|+.+.. ..++ ...+.+++.++++++.+.|+..+...+
T Consensus 144 ---------~~~i~~l~~~g~~v~i------~~vv-------------~~~N~~~i~~~~~~~~~lgv~~i~~~~ 190 (378)
T PRK05301 144 ---------LAVARLVKAHGYPLTL------NAVI-------------HRHNIDQIPRIIELAVELGADRLELAN 190 (378)
T ss_pred ---------HHHHHHHHHCCCceEE------EEEe-------------ecCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 0000135566664331 1122 345778999999999999988775543
No 232
>PRK10444 UMP phosphatase; Provisional
Probab=92.26 E-value=0.65 Score=43.26 Aligned_cols=119 Identities=10% Similarity=0.093 Sum_probs=58.2
Q ss_pred ccEEEEecCCccccCHHHHHHH---H-HHHhcCCC--------CChHHHHH---HHhCCCchHHHHHHHhhhhccccccc
Q 016204 233 TDLILFDLKNFNLVSVDIIYSS---H-KLLSRNFS--------ISKNFTFR---NFIGLPFVYECVLIILGTLASKFEKL 297 (393)
Q Consensus 233 ~k~iiFD~DGTL~ds~~~~~~~---~-~l~~~~~~--------~~~~~~~~---~~~g~~~~~~~~~~~~g~~~~~~~~~ 297 (393)
||.++||+||||+++...+-.+ . .+.+.|.+ ....+.+. ..+|.+...+++.-............
T Consensus 1 ~~~v~~DlDGtL~~~~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~~~~~~i~ts~~~~~~~L~~~ 80 (248)
T PRK10444 1 IKNVICDIDGVLMHDNVAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDSVFYTSAMATADFLRRQ 80 (248)
T ss_pred CcEEEEeCCCceEeCCeeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCHhhEecHHHHHHHHHHhC
Confidence 5789999999999996554333 3 55555432 22222222 23566555544221111111111110
Q ss_pred -cccccccCCCcHHHHHHHHHHhCCC----CCcEEEEecCchhhHHHHH------HcCCeEEEEcCCC
Q 016204 298 -GGEVRWMGKPDKIIYKSAMAMVGVD----ACDSIAVGDSLHHDIKGAN------AAGIQSVFIIGGI 354 (393)
Q Consensus 298 -~~~~~~~gKP~p~~~~~~~~~lgi~----~~~~v~VGDsl~~Di~~a~------~aG~~~i~v~~G~ 354 (393)
+......|. ..+...++..|+. ..+.|++|.....+..... ..|...+......
T Consensus 81 ~~~~v~~~g~---~~l~~~l~~~g~~~~~~~~~~Vvvg~~~~~~~~~l~~a~~~l~~g~~~i~~n~D~ 145 (248)
T PRK10444 81 EGKKAYVIGE---GALIHELYKAGFTITDINPDFVIVGETRSYNWDMMHKAAYFVANGARFIATNPDT 145 (248)
T ss_pred CCCEEEEEcC---HHHHHHHHHCcCEecCCCCCEEEEeCCCCCCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 112233443 2344444555553 2367888887444433322 3488877766443
No 233
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=91.99 E-value=0.24 Score=54.40 Aligned_cols=54 Identities=17% Similarity=0.181 Sum_probs=39.8
Q ss_pred CCcEEEEeccccccCC---------------CcCCccHHHHHHHHHHC-CCeEEEEcCCCCCchHHHHHHHh
Q 016204 29 RFKAWLLDQFGVLHDG---------------KKPYPGAISTLEMLATT-GAKMVVISNSSRRASTTIDKLKS 84 (393)
Q Consensus 29 ~~k~i~~DlDGtL~~g---------------~~~ipga~eal~~L~~~-G~~v~~~TN~~~~~~~~~~~l~~ 84 (393)
+-++++||.||||..- -.+-|+..++|+.|.+. +-.|+++| +|..+.+-+.|..
T Consensus 590 ~~RLlfLDyDGTLap~~~~P~~~~~~~~~~~a~p~p~l~~~L~~L~~dp~n~VaIVS--GR~~~~Le~~fg~ 659 (934)
T PLN03064 590 NNRLLILGFNATLTEPVDTPGRRGDQIKEMELRLHPELKEPLRALCSDPKTTIVVLS--GSDRSVLDENFGE 659 (934)
T ss_pred cceEEEEecCceeccCCCCcccccccccccccCCCHHHHHHHHHHHhCCCCeEEEEe--CCCHHHHHHHhCC
Confidence 3479999999999852 12347789999999885 66899999 6666665555543
No 234
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=91.99 E-value=0.19 Score=48.72 Aligned_cols=21 Identities=14% Similarity=0.123 Sum_probs=18.4
Q ss_pred EEEEecCCccccCHHHHHHHH
Q 016204 235 LILFDLKNFNLVSVDIIYSSH 255 (393)
Q Consensus 235 ~iiFD~DGTL~ds~~~~~~~~ 255 (393)
+++|||||||+++...+..+.
T Consensus 2 ~~ifD~DGvL~~g~~~i~ga~ 22 (321)
T TIGR01456 2 GFAFDIDGVLFRGKKPIAGAS 22 (321)
T ss_pred EEEEeCcCceECCccccHHHH
Confidence 589999999999999876666
No 235
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=91.93 E-value=0.086 Score=45.90 Aligned_cols=19 Identities=32% Similarity=0.370 Sum_probs=16.5
Q ss_pred EEEEecCCccccCHHHHHH
Q 016204 235 LILFDLKNFNLVSVDIIYS 253 (393)
Q Consensus 235 ~iiFD~DGTL~ds~~~~~~ 253 (393)
+++|||||||+++...+..
T Consensus 1 ~vlFDlDgtLv~~~~~~~~ 19 (183)
T TIGR01509 1 AILFDLDGVLVDTSSAIEK 19 (183)
T ss_pred CeeeccCCceechHHHHHH
Confidence 4899999999999888664
No 236
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=91.85 E-value=0.087 Score=49.54 Aligned_cols=58 Identities=16% Similarity=0.163 Sum_probs=44.1
Q ss_pred ccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCcccCCCCc
Q 016204 303 WMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATELGLDSY 364 (393)
Q Consensus 303 ~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~~~~~~~ 364 (393)
..+-.+...++.+++++|++++++++|||+ .||++|.+.+|. ++.+.. ..++....|+
T Consensus 184 ~~g~sKg~al~~l~~~~gi~~~~v~afGD~-~NDi~Ml~~ag~-~vAm~N--a~~~vK~~A~ 241 (272)
T PRK15126 184 PVGCNKGAALAVLSQHLGLSLADCMAFGDA-MNDREMLGSVGR-GFIMGN--AMPQLRAELP 241 (272)
T ss_pred cCCCChHHHHHHHHHHhCCCHHHeEEecCC-HHHHHHHHHcCC-ceeccC--ChHHHHHhCC
Confidence 334455889999999999999999999999 899999999997 344443 4444433444
No 237
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=91.82 E-value=0.39 Score=42.73 Aligned_cols=52 Identities=15% Similarity=0.166 Sum_probs=39.0
Q ss_pred cCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCcccceEEeCch
Q 016204 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (393)
Q Consensus 46 ~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~~~~~iits~~ 100 (393)
.+.+++.++|+.|+++|+++.++||+++. .....|+.+|+.... +.++++..
T Consensus 106 ~~~~~~~~~L~~l~~~g~~~~i~T~~~~~--~~~~~l~~~gl~~~f-~~~~~~~~ 157 (197)
T TIGR01548 106 ETLLTPKGLLRELHRAPKGMAVVTGRPRK--DAAKFLTTHGLEILF-PVQIWMED 157 (197)
T ss_pred ccccCHHHHHHHHHHcCCcEEEECCCCHH--HHHHHHHHcCchhhC-CEEEeecC
Confidence 45567899999999999999999987543 344456778887554 77777654
No 238
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=91.56 E-value=0.11 Score=47.42 Aligned_cols=45 Identities=24% Similarity=0.344 Sum_probs=40.2
Q ss_pred cccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeE
Q 016204 302 RWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQS 347 (393)
Q Consensus 302 ~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~ 347 (393)
...+.+++..++.+++++|++++++++|||+ .||++|++.+|+..
T Consensus 152 ~~~~~~Kg~al~~l~~~~~i~~~~~i~~GD~-~NDi~m~~~ag~~v 196 (230)
T PRK01158 152 KSPGVNKGTGLKKLAELMGIDPEEVAAIGDS-ENDLEMFEVAGFGV 196 (230)
T ss_pred eeCCCChHHHHHHHHHHhCCCHHHEEEECCc-hhhHHHHHhcCceE
Confidence 3456667889999999999999999999999 79999999999864
No 239
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=91.35 E-value=1 Score=44.19 Aligned_cols=47 Identities=19% Similarity=0.355 Sum_probs=38.2
Q ss_pred cCCCcCC--ccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCC
Q 016204 42 HDGKKPY--PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (393)
Q Consensus 42 ~~g~~~i--pga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~ 88 (393)
+.|.+++ |+..+.++++++.|+.+.+.||...-+++.++.|.+.|++
T Consensus 59 ~~GGEPll~~~~~~ii~~~~~~g~~~~l~TNG~ll~~e~~~~L~~~g~~ 107 (358)
T TIGR02109 59 FSGGEPLARPDLVELVAHARRLGLYTNLITSGVGLTEARLDALADAGLD 107 (358)
T ss_pred EeCccccccccHHHHHHHHHHcCCeEEEEeCCccCCHHHHHHHHhCCCC
Confidence 4455544 7899999999999999999999877777888888887774
No 240
>PRK10976 putative hydrolase; Provisional
Probab=91.26 E-value=0.11 Score=48.61 Aligned_cols=47 Identities=21% Similarity=0.220 Sum_probs=39.7
Q ss_pred cCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcC
Q 016204 304 MGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIG 352 (393)
Q Consensus 304 ~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~ 352 (393)
.+-.+...++.+++++|++++++++|||+ .||++|.+.+|.. +.+..
T Consensus 187 ~gvsKg~al~~l~~~lgi~~~~viafGD~-~NDi~Ml~~ag~~-vAm~N 233 (266)
T PRK10976 187 GGVSKGHALEAVAKKLGYSLKDCIAFGDG-MNDAEMLSMAGKG-CIMGN 233 (266)
T ss_pred CCCChHHHHHHHHHHcCCCHHHeEEEcCC-cccHHHHHHcCCC-eeecC
Confidence 34455889999999999999999999999 7999999999984 34443
No 241
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=91.25 E-value=1.4 Score=48.91 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=33.2
Q ss_pred ccCCCcCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCC
Q 016204 41 LHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (393)
Q Consensus 41 L~~g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~ 88 (393)
+.-.+.+=|+++++|++|++.|++++++|+....+ .....+++|+.
T Consensus 545 i~~~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~t--A~~IA~~lGI~ 590 (902)
T PRK10517 545 IAFLDPPKETTAPALKALKASGVTVKILTGDSELV--AAKVCHEVGLD 590 (902)
T ss_pred HhhhCcchhhHHHHHHHHHHCCCEEEEEcCCCHHH--HHHHHHHcCCC
Confidence 33356677999999999999999999999643333 22333457874
No 242
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=91.07 E-value=0.13 Score=46.80 Aligned_cols=19 Identities=21% Similarity=0.153 Sum_probs=16.7
Q ss_pred ccEEEEecCCccccCHHHH
Q 016204 233 TDLILFDLKNFNLVSVDII 251 (393)
Q Consensus 233 ~k~iiFD~DGTL~ds~~~~ 251 (393)
-++++||+||||+++...+
T Consensus 3 ~~~vifDfDgTi~~~d~~~ 21 (219)
T PRK09552 3 SIQIFCDFDGTITNNDNII 21 (219)
T ss_pred CcEEEEcCCCCCCcchhhH
Confidence 4589999999999998876
No 243
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=91.00 E-value=2.1 Score=48.10 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=34.2
Q ss_pred CCcCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCC
Q 016204 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (393)
Q Consensus 44 g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~ 88 (393)
.+.+-|+++++|++|+++|++++++| ++.........+++|+-
T Consensus 566 ~Dplr~~v~~aI~~l~~~Gi~v~~~T--Gd~~~ta~~ia~~~gi~ 608 (997)
T TIGR01106 566 IDPPRAAVPDAVGKCRSAGIKVIMVT--GDHPITAKAIAKGVGII 608 (997)
T ss_pred cCCChHHHHHHHHHHHHCCCeEEEEC--CCCHHHHHHHHHHcCCC
Confidence 44566899999999999999999999 66555555566677874
No 244
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=90.98 E-value=0.52 Score=42.16 Aligned_cols=57 Identities=23% Similarity=0.100 Sum_probs=40.8
Q ss_pred CCcEEEEeccccccCCCc------CC--ccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCC
Q 016204 29 RFKAWLLDQFGVLHDGKK------PY--PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (393)
Q Consensus 29 ~~k~i~~DlDGtL~~g~~------~i--pga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~ 88 (393)
..+++++|+|+||++... .+ |+..++|+.+-+ ...+++-|.++ ..-+...+..+|+.
T Consensus 20 ~kklLVLDLDeTLvh~~~~~~~~~~~kRP~l~eFL~~~~~-~feIvVwTAa~--~~ya~~~l~~l~~~ 84 (195)
T TIGR02245 20 GKKLLVLDIDYTLFDHRSPAETGEELMRPYLHEFLTSAYE-DYDIVIWSATS--MKWIEIKMTELGVL 84 (195)
T ss_pred CCcEEEEeCCCceEcccccCCCceEEeCCCHHHHHHHHHh-CCEEEEEecCC--HHHHHHHHHHhccc
Confidence 558999999999998531 22 899999999988 68999999433 32233445556653
No 245
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=90.71 E-value=0.36 Score=45.74 Aligned_cols=30 Identities=27% Similarity=0.453 Sum_probs=21.6
Q ss_pred ccEEEEecCCccccCHHH-------HHHHH-HHHhcCC
Q 016204 233 TDLILFDLKNFNLVSVDI-------IYSSH-KLLSRNF 262 (393)
Q Consensus 233 ~k~iiFD~DGTL~ds~~~-------~~~~~-~l~~~~~ 262 (393)
.+.|+||+||||++.+.. ..++. .+.+.|.
T Consensus 126 ~kvIvFDLDgTLi~~~~~v~irdPgV~EaL~~LkekGi 163 (301)
T TIGR01684 126 PHVVVFDLDSTLITDEEPVRIRDPRIYDSLTELKKRGC 163 (301)
T ss_pred ceEEEEecCCCCcCCCCccccCCHHHHHHHHHHHHCCC
Confidence 689999999999998753 22334 6666654
No 246
>PTZ00174 phosphomannomutase; Provisional
Probab=90.60 E-value=0.14 Score=47.60 Aligned_cols=39 Identities=10% Similarity=-0.056 Sum_probs=31.8
Q ss_pred cHHHHHHHHHHhCCCCCcEEEEec----CchhhHHHHHHcCCeEEEEc
Q 016204 308 DKIIYKSAMAMVGVDACDSIAVGD----SLHHDIKGANAAGIQSVFII 351 (393)
Q Consensus 308 ~p~~~~~~~~~lgi~~~~~v~VGD----sl~~Di~~a~~aG~~~i~v~ 351 (393)
+...++.++++ ++++++||| + .||++|.+.++..++.|.
T Consensus 189 Kg~al~~L~~~----~~eviafGD~~~~~-~NDieMl~~~~~~g~~v~ 231 (247)
T PTZ00174 189 KTYCLRHLEND----FKEIHFFGDKTFEG-GNDYEIYNDPRTIGHSVK 231 (247)
T ss_pred HHHHHHHHHhh----hhhEEEEcccCCCC-CCcHhhhhcCCCceEEeC
Confidence 35556666665 589999999 8 799999999999888887
No 247
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=90.33 E-value=0.13 Score=44.64 Aligned_cols=29 Identities=34% Similarity=0.475 Sum_probs=24.8
Q ss_pred cEEEEecCchhhHHHHHHcCCeEEEEcCCC
Q 016204 325 DSIAVGDSLHHDIKGANAAGIQSVFIIGGI 354 (393)
Q Consensus 325 ~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~ 354 (393)
--+.-||+ .+||.+|+.+|++.|-+.-..
T Consensus 186 ~~IhYGDS-D~Di~AAkeaG~RgIRilRAa 214 (237)
T COG3700 186 IRIHYGDS-DNDITAAKEAGARGIRILRAA 214 (237)
T ss_pred ceEEecCC-chhhhHHHhcCccceeEEecC
Confidence 36889999 999999999999999876443
No 248
>PLN02811 hydrolase
Probab=89.97 E-value=0.42 Score=43.38 Aligned_cols=53 Identities=17% Similarity=0.150 Sum_probs=36.1
Q ss_pred CCcCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHh-CCCCCcccceEEeCc
Q 016204 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKS-LGFDPSLFAGAITSG 99 (393)
Q Consensus 44 g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~-lG~~~~~~~~iits~ 99 (393)
...++||+.++|+.|+++|+++.++||+++... ..++.+ .++... ++.++++.
T Consensus 76 ~~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~--~~~~~~~~~l~~~-f~~i~~~~ 129 (220)
T PLN02811 76 TSDLMPGAERLVRHLHAKGIPIAIATGSHKRHF--DLKTQRHGELFSL-MHHVVTGD 129 (220)
T ss_pred hCCCCccHHHHHHHHHHCCCcEEEEeCCchhhH--HHHHcccHHHHhh-CCEEEECC
Confidence 446789999999999999999999998765431 112222 234322 36677665
No 249
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=89.92 E-value=0.93 Score=47.06 Aligned_cols=74 Identities=12% Similarity=0.068 Sum_probs=49.6
Q ss_pred CcEEEEeccccccCCC-----------cC-CccHHHHHHHHHHCCCeEEEEcCCCC----CchHHHHHHHhCCCCCcccc
Q 016204 30 FKAWLLDQFGVLHDGK-----------KP-YPGAISTLEMLATTGAKMVVISNSSR----RASTTIDKLKSLGFDPSLFA 93 (393)
Q Consensus 30 ~k~i~~DlDGtL~~g~-----------~~-ipga~eal~~L~~~G~~v~~~TN~~~----~~~~~~~~l~~lG~~~~~~~ 93 (393)
-+.|+.|||||++..+ .- -.|+.+...+.+++|++++++|..+- .+++++.-+.+-|-..+.--
T Consensus 530 ~kIVISDIDGTITKSDvLGh~lp~iGkDWTh~GVAkLyt~Ik~NGYk~lyLSARaIgQA~~TR~yL~nv~QdG~~LPdGP 609 (738)
T KOG2116|consen 530 DKIVISDIDGTITKSDVLGHVLPMIGKDWTHTGVAKLYTKIKENGYKILYLSARAIGQADSTRQYLKNVEQDGKKLPDGP 609 (738)
T ss_pred CcEEEecCCCceEhhhhhhhhhhhhcCcchhhhHHHHHHHHHhCCeeEEEEehhhhhhhHHHHHHHHHHhhcCccCCCCC
Confidence 4789999999999843 22 25899999999999999999995321 12455555555565433312
Q ss_pred eEEeCchhHH
Q 016204 94 GAITSGELTH 103 (393)
Q Consensus 94 ~iits~~~~~ 103 (393)
.|++|....+
T Consensus 610 ViLSPd~lf~ 619 (738)
T KOG2116|consen 610 VILSPDSLFA 619 (738)
T ss_pred EEeCCCcchH
Confidence 4566554433
No 250
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=89.80 E-value=0.18 Score=47.18 Aligned_cols=61 Identities=18% Similarity=0.159 Sum_probs=46.8
Q ss_pred cCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCcccCCCCccccC
Q 016204 304 MGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATELGLDSYGEVA 368 (393)
Q Consensus 304 ~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~~~~~~~~~i~ 368 (393)
.+-.++.+++.+++++|++++++++|||+ .||++|++.+|+ .|..|...++....|+.+.+
T Consensus 196 ~~~~K~~~l~~l~~~~gi~~~e~i~~GD~-~NDi~m~~~ag~---~vamgna~~~lk~~Ad~v~~ 256 (272)
T PRK10530 196 KGNSKGKRLTQWVEAQGWSMKNVVAFGDN-FNDISMLEAAGL---GVAMGNADDAVKARADLVIG 256 (272)
T ss_pred CCCChHHHHHHHHHHcCCCHHHeEEeCCC-hhhHHHHHhcCc---eEEecCchHHHHHhCCEEEe
Confidence 34456789999999999999999999999 799999999997 44455444443345555554
No 251
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=89.75 E-value=3.7 Score=44.61 Aligned_cols=48 Identities=17% Similarity=0.250 Sum_probs=35.0
Q ss_pred ccccCCCcCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCC
Q 016204 39 GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (393)
Q Consensus 39 GtL~~g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~ 88 (393)
|.+.-.+.+-|+++++|++|++.|++++++|+....+ ....-+++|+.
T Consensus 435 Gli~l~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~t--A~~IA~~lGI~ 482 (755)
T TIGR01647 435 GLLPLFDPPRHDTKETIERARHLGVEVKMVTGDHLAI--AKETARRLGLG 482 (755)
T ss_pred EEeeccCCChhhHHHHHHHHHHCCCeEEEECCCCHHH--HHHHHHHcCCC
Confidence 4444566777999999999999999999999654433 22233457884
No 252
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=89.64 E-value=2.5 Score=46.96 Aligned_cols=48 Identities=19% Similarity=0.296 Sum_probs=33.8
Q ss_pred ccccCCCcCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCC
Q 016204 39 GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (393)
Q Consensus 39 GtL~~g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~ 88 (393)
|.+.-.+.+=|+++++|++|++.|++++++|+....+ ....-+++|+.
T Consensus 543 Gli~l~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~t--A~aIA~~lGI~ 590 (903)
T PRK15122 543 GFLTFLDPPKESAAPAIAALRENGVAVKVLTGDNPIV--TAKICREVGLE 590 (903)
T ss_pred EEEeccCccHHHHHHHHHHHHHCCCeEEEECCCCHHH--HHHHHHHcCCC
Confidence 3334456677999999999999999999999644333 22223457874
No 253
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=89.46 E-value=0.26 Score=44.68 Aligned_cols=22 Identities=32% Similarity=0.300 Sum_probs=18.4
Q ss_pred cccEEEEecCCccccCHHHHHH
Q 016204 232 MTDLILFDLKNFNLVSVDIIYS 253 (393)
Q Consensus 232 M~k~iiFD~DGTL~ds~~~~~~ 253 (393)
|+|+|+||+||||+|.......
T Consensus 3 ~~k~i~FD~d~TL~d~~~~~~~ 24 (229)
T COG1011 3 MIKAILFDLDGTLLDFDSAEFR 24 (229)
T ss_pred ceeEEEEecCCcccccchHHhH
Confidence 5899999999999998775443
No 254
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=89.37 E-value=0.64 Score=43.77 Aligned_cols=30 Identities=23% Similarity=0.213 Sum_probs=23.5
Q ss_pred ccEEEEecCCccccCHHHHHHHH----HHHhcCC
Q 016204 233 TDLILFDLKNFNLVSVDIIYSSH----KLLSRNF 262 (393)
Q Consensus 233 ~k~iiFD~DGTL~ds~~~~~~~~----~l~~~~~ 262 (393)
+++++||+||||+.....+..+. .+.+.+.
T Consensus 8 y~~~l~DlDGvl~~G~~~ipga~e~l~~L~~~g~ 41 (269)
T COG0647 8 YDGFLFDLDGVLYRGNEAIPGAAEALKRLKAAGK 41 (269)
T ss_pred cCEEEEcCcCceEeCCccCchHHHHHHHHHHcCC
Confidence 78999999999999988877665 4445544
No 255
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=89.12 E-value=0.21 Score=46.70 Aligned_cols=18 Identities=22% Similarity=0.261 Sum_probs=15.7
Q ss_pred ccEEEEecCCccccCHHH
Q 016204 233 TDLILFDLKNFNLVSVDI 250 (393)
Q Consensus 233 ~k~iiFD~DGTL~ds~~~ 250 (393)
+|.|+||+||||+++...
T Consensus 3 ~kli~~DlDGTLl~~~~~ 20 (270)
T PRK10513 3 IKLIAIDMDGTLLLPDHT 20 (270)
T ss_pred eEEEEEecCCcCcCCCCc
Confidence 799999999999997543
No 256
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=88.99 E-value=0.96 Score=40.14 Aligned_cols=47 Identities=17% Similarity=0.366 Sum_probs=31.4
Q ss_pred EEEecCchhhHHHHHHcCCeEEEEcCCCCCcccCCCCccccCChhHHHHHH
Q 016204 327 IAVGDSLHHDIKGANAAGIQSVFIIGGIHATELGLDSYGEVADLSSVQTLV 377 (393)
Q Consensus 327 v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~~~~~~~~~i~~~~~l~~~l 377 (393)
++|.|+ ..-+..+...|+.+|+.....++... ....+.+-+|+.+.+
T Consensus 139 vlIDD~-~~n~~~~~~~g~~~iLfd~p~Nr~~~---~~~Rv~~W~ei~~~i 185 (191)
T PF06941_consen 139 VLIDDR-PHNLEQFANAGIPVILFDQPYNRDES---NFPRVNNWEEIEDLI 185 (191)
T ss_dssp EEEESS-SHHHSS-SSESSEEEEE--GGGTT-----TSEEE-STTSHHHHH
T ss_pred EEecCC-hHHHHhccCCCceEEEEcCCCCCCCC---CCccCCCHHHHHHHH
Confidence 789999 57799899999999999876665443 345667777776654
No 257
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=88.93 E-value=0.24 Score=44.19 Aligned_cols=32 Identities=28% Similarity=0.409 Sum_probs=25.2
Q ss_pred CcEEEEeccccccCCCcCC--ccHHHHHHHHHHC
Q 016204 30 FKAWLLDQFGVLHDGKKPY--PGAISTLEMLATT 61 (393)
Q Consensus 30 ~k~i~~DlDGtL~~g~~~i--pga~eal~~L~~~ 61 (393)
+++|+||.||||+++...+ ++..++++.+++.
T Consensus 1 i~~i~fDktGTLt~~~~~v~~~~~~~~~~~~~~~ 34 (215)
T PF00702_consen 1 IDAICFDKTGTLTQGKMSVAPPSNEAALAIAAAL 34 (215)
T ss_dssp ESEEEEECCTTTBESHHEEESCSHHHHHHHHHHH
T ss_pred CeEEEEecCCCcccCeEEEEeccHHHHHHHHHHh
Confidence 4799999999999998888 6666666666553
No 258
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=88.83 E-value=3.6 Score=45.47 Aligned_cols=48 Identities=19% Similarity=0.259 Sum_probs=34.1
Q ss_pred ccccCCCcCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCC
Q 016204 39 GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (393)
Q Consensus 39 GtL~~g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~ 88 (393)
|.+.-.+.+=|+++++|++|++.|++++++|+....+ ....-+++|+.
T Consensus 508 Gli~l~Dp~R~~~~~aI~~l~~aGI~vvmiTGD~~~t--A~aIA~~lGI~ 555 (867)
T TIGR01524 508 GFLGFLDPPKESTKEAIAALFKNGINVKVLTGDNEIV--TARICQEVGID 555 (867)
T ss_pred EEEEeeCCCchhHHHHHHHHHHCCCEEEEEcCCCHHH--HHHHHHHcCCC
Confidence 3344456777999999999999999999999643333 23333457874
No 259
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=88.82 E-value=5.1 Score=38.84 Aligned_cols=14 Identities=14% Similarity=0.432 Sum_probs=12.6
Q ss_pred ccEEEEecCCcccc
Q 016204 233 TDLILFDLKNFNLV 246 (393)
Q Consensus 233 ~k~iiFD~DGTL~d 246 (393)
++.++|||||||+.
T Consensus 110 ~~LvvfDmDGTLI~ 123 (322)
T PRK11133 110 PGLLVMDMDSTAIQ 123 (322)
T ss_pred CCEEEEECCCCCcc
Confidence 58999999999994
No 260
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=88.80 E-value=3.9 Score=46.18 Aligned_cols=43 Identities=12% Similarity=0.149 Sum_probs=31.9
Q ss_pred CCcCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCC
Q 016204 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (393)
Q Consensus 44 g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~ 88 (393)
.+.+-|+++++|+.|++.|++++++|+.. ........+++|+.
T Consensus 644 ~Dp~r~~v~~aI~~l~~aGIkv~MiTGD~--~~tA~~iA~~~Gi~ 686 (1053)
T TIGR01523 644 YDPPRNESAGAVEKCHQAGINVHMLTGDF--PETAKAIAQEVGII 686 (1053)
T ss_pred ecCCchhHHHHHHHHHHCCCEEEEECCCC--HHHHHHHHHHcCCC
Confidence 45666999999999999999999999543 33333334467874
No 261
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=88.38 E-value=0.24 Score=46.64 Aligned_cols=46 Identities=24% Similarity=0.202 Sum_probs=39.8
Q ss_pred ccCCCcHHHHHHHHHHhCCCC-CcEEEEecCchhhHHHHHHcCCeEEEE
Q 016204 303 WMGKPDKIIYKSAMAMVGVDA-CDSIAVGDSLHHDIKGANAAGIQSVFI 350 (393)
Q Consensus 303 ~~gKP~p~~~~~~~~~lgi~~-~~~v~VGDsl~~Di~~a~~aG~~~i~v 350 (393)
..+ .+...++.+++++|+++ +++++|||+ .||++|++.+|+..+.-
T Consensus 187 ~~~-~Kg~al~~l~~~~~i~~~~~v~~~GDs-~NDi~m~~~ag~~vam~ 233 (273)
T PRK00192 187 GGG-DKGKAVRWLKELYRRQDGVETIALGDS-PNDLPMLEAADIAVVVP 233 (273)
T ss_pred CCC-CHHHHHHHHHHHHhccCCceEEEEcCC-hhhHHHHHhCCeeEEeC
Confidence 345 66789999999999999 999999999 79999999999765543
No 262
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=88.37 E-value=1.2 Score=42.41 Aligned_cols=17 Identities=24% Similarity=0.473 Sum_probs=14.9
Q ss_pred ccEEEEecCCccccCHH
Q 016204 233 TDLILFDLKNFNLVSVD 249 (393)
Q Consensus 233 ~k~iiFD~DGTL~ds~~ 249 (393)
.|.|+||+||||+++..
T Consensus 128 ~~~i~~D~D~TL~~~~~ 144 (303)
T PHA03398 128 PHVIVFDLDSTLITDEE 144 (303)
T ss_pred ccEEEEecCCCccCCCC
Confidence 68999999999999744
No 263
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=88.15 E-value=0.28 Score=38.94 Aligned_cols=20 Identities=25% Similarity=0.255 Sum_probs=14.4
Q ss_pred EEEecCCccccCHHHHHHHH
Q 016204 236 ILFDLKNFNLVSVDIIYSSH 255 (393)
Q Consensus 236 iiFD~DGTL~ds~~~~~~~~ 255 (393)
++||+||||++....+-.+.
T Consensus 1 ~l~D~dGvl~~g~~~ipga~ 20 (101)
T PF13344_consen 1 FLFDLDGVLYNGNEPIPGAV 20 (101)
T ss_dssp EEEESTTTSEETTEE-TTHH
T ss_pred CEEeCccEeEeCCCcCcCHH
Confidence 68999999999665544433
No 264
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=88.01 E-value=1.2 Score=39.18 Aligned_cols=45 Identities=9% Similarity=0.116 Sum_probs=32.8
Q ss_pred ccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCC
Q 016204 303 WMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIH 355 (393)
Q Consensus 303 ~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~ 355 (393)
..+.|.+++++.+++...++|. |=+- ++-++..+++.+.|++|-.
T Consensus 56 ~i~~s~~Eile~llk~i~Idp~----fKef----~e~ike~di~fiVvSsGm~ 100 (220)
T COG4359 56 SIHSSLEEILEFLLKDIKIDPG----FKEF----VEWIKEHDIPFIVVSSGMD 100 (220)
T ss_pred hcCCCHHHHHHHHHhhcccCcc----HHHH----HHHHHHcCCCEEEEeCCCc
Confidence 4466668888888888877762 2333 6888888999888888753
No 265
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=87.71 E-value=0.33 Score=43.86 Aligned_cols=45 Identities=20% Similarity=0.296 Sum_probs=39.4
Q ss_pred ccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEE
Q 016204 303 WMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSV 348 (393)
Q Consensus 303 ~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i 348 (393)
..+..+...++.+++++|++++++++|||+ .||++|++.+|+...
T Consensus 143 ~~~~~K~~~i~~l~~~~~i~~~~~i~iGDs-~ND~~ml~~ag~~va 187 (215)
T TIGR01487 143 KKGVDKGVGVEKLKELLGIKPEEVAAIGDS-ENDIDLFRVVGFKVA 187 (215)
T ss_pred cCCCChHHHHHHHHHHhCCCHHHEEEECCC-HHHHHHHHhCCCeEE
Confidence 345566889999999999999999999999 799999999997644
No 266
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=87.71 E-value=0.33 Score=40.24 Aligned_cols=15 Identities=20% Similarity=0.310 Sum_probs=13.2
Q ss_pred ccEEEEecCCccccC
Q 016204 233 TDLILFDLKNFNLVS 247 (393)
Q Consensus 233 ~k~iiFD~DGTL~ds 247 (393)
+|+|+||+||||++.
T Consensus 1 ~K~i~~DiDGTL~~~ 15 (126)
T TIGR01689 1 MKRLVMDLDNTITLT 15 (126)
T ss_pred CCEEEEeCCCCcccC
Confidence 389999999999974
No 267
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=87.62 E-value=1.2 Score=42.57 Aligned_cols=57 Identities=19% Similarity=0.226 Sum_probs=45.5
Q ss_pred EEEEeccccccC-------------------CCcCCccHHHHHHHHHHCC-CeEEEEcCCCCCc-hHHHHHHHhCCCC
Q 016204 32 AWLLDQFGVLHD-------------------GKKPYPGAISTLEMLATTG-AKMVVISNSSRRA-STTIDKLKSLGFD 88 (393)
Q Consensus 32 ~i~~DlDGtL~~-------------------g~~~ipga~eal~~L~~~G-~~v~~~TN~~~~~-~~~~~~l~~lG~~ 88 (393)
+++.|||-|+.. ...++||+..+.+.|.+.| .+++++||++-.. ..+.+.+..-+|+
T Consensus 163 giISDiDDTV~~T~V~~~~r~~~~s~~l~~~tr~~ipGV~~~yr~l~~~~~apvfYvSnSPw~~f~~L~efi~~~~~P 240 (373)
T COG4850 163 GIISDIDDTVKVTGVTEGPRKAGRSLLLHALTRQVIPGVSAWYRALTNLGDAPVFYVSNSPWQLFPTLQEFITNRNFP 240 (373)
T ss_pred eeeeccccceEecccccchHHHHHHhhhcccccCCCCCHHHHHHHHHhcCCCCeEEecCChhHhHHHHHHHHhcCCCC
Confidence 678999999865 3478999999999999998 8999999988655 4555555555565
No 268
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=87.61 E-value=0.58 Score=44.52 Aligned_cols=30 Identities=27% Similarity=0.418 Sum_probs=26.1
Q ss_pred cCCccHHHHHHHHHHCCCeEEEEcCCCCCc
Q 016204 46 KPYPGAISTLEMLATTGAKMVVISNSSRRA 75 (393)
Q Consensus 46 ~~ipga~eal~~L~~~G~~v~~~TN~~~~~ 75 (393)
.++||+.++|+.|+++|++++++||+++..
T Consensus 144 ~l~pGv~elL~~L~~~g~~l~IvTn~~~~~ 173 (286)
T PLN02779 144 PLRPGVLRLMDEALAAGIKVAVCSTSNEKA 173 (286)
T ss_pred CchhhHHHHHHHHHHCCCeEEEEeCCCHHH
Confidence 467999999999999999999999875443
No 269
>COG4996 Predicted phosphatase [General function prediction only]
Probab=87.05 E-value=0.89 Score=37.63 Aligned_cols=36 Identities=6% Similarity=0.135 Sum_probs=22.7
Q ss_pred cccCCCcHHHHH---HHHHHh------CCCCCcEEEEecCchhhHH
Q 016204 302 RWMGKPDKIIYK---SAMAMV------GVDACDSIAVGDSLHHDIK 338 (393)
Q Consensus 302 ~~~gKP~p~~~~---~~~~~l------gi~~~~~v~VGDsl~~Di~ 338 (393)
..+-+|+|.-+. +++..+ .+.|++++++.|+ ..-+.
T Consensus 86 y~ViePhP~K~~ML~~llr~i~~er~~~ikP~~Ivy~DDR-~iH~~ 130 (164)
T COG4996 86 YIVIEPHPYKFLMLSQLLREINTERNQKIKPSEIVYLDDR-RIHFG 130 (164)
T ss_pred EEEecCCChhHHHHHHHHHHHHHhhccccCcceEEEEecc-cccHH
Confidence 345566665443 344433 4689999999999 54443
No 270
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=86.97 E-value=0.87 Score=39.88 Aligned_cols=30 Identities=23% Similarity=0.455 Sum_probs=24.3
Q ss_pred cCCccHHHHHHHHHHCCCeEEEEcCCCCCc
Q 016204 46 KPYPGAISTLEMLATTGAKMVVISNSSRRA 75 (393)
Q Consensus 46 ~~ipga~eal~~L~~~G~~v~~~TN~~~~~ 75 (393)
+++|.|+++|++.+++|.++++-|..|.+.
T Consensus 103 hlypDav~~ik~wk~~g~~vyiYSSGSV~A 132 (229)
T COG4229 103 HLYPDAVQAIKRWKALGMRVYIYSSGSVKA 132 (229)
T ss_pred ccCHhHHHHHHHHHHcCCcEEEEcCCCchh
Confidence 578999999999999999999988544443
No 271
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=86.92 E-value=0.36 Score=39.85 Aligned_cols=14 Identities=14% Similarity=0.090 Sum_probs=12.4
Q ss_pred cEEEEecCCccccC
Q 016204 234 DLILFDLKNFNLVS 247 (393)
Q Consensus 234 k~iiFD~DGTL~ds 247 (393)
|+++||+||||+++
T Consensus 1 k~~~~D~dgtL~~~ 14 (132)
T TIGR01662 1 KGVVLDLDGTLTDD 14 (132)
T ss_pred CEEEEeCCCceecC
Confidence 68999999999973
No 272
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=86.75 E-value=0.73 Score=46.26 Aligned_cols=45 Identities=22% Similarity=0.251 Sum_probs=35.4
Q ss_pred CCcEEEEeccccccCCC-----------------cCCccHHHHHHHHHHCCCeEEEEcCCCC
Q 016204 29 RFKAWLLDQFGVLHDGK-----------------KPYPGAISTLEMLATTGAKMVVISNSSR 73 (393)
Q Consensus 29 ~~k~i~~DlDGtL~~g~-----------------~~ipga~eal~~L~~~G~~v~~~TN~~~ 73 (393)
..|+.++|+|+|||-|- .++-.-++.|..|+++|+-++++|-|.-
T Consensus 221 ~kK~LVLDLDNTLWGGVIGedGv~GI~Ls~~~~G~~fk~fQ~~Ik~l~kqGVlLav~SKN~~ 282 (574)
T COG3882 221 SKKALVLDLDNTLWGGVIGEDGVDGIRLSNSAEGEAFKTFQNFIKGLKKQGVLLAVCSKNTE 282 (574)
T ss_pred ccceEEEecCCcccccccccccccceeecCCCCchhHHHHHHHHHHHHhccEEEEEecCCch
Confidence 56999999999999732 2223357789999999999999997653
No 273
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=86.69 E-value=0.35 Score=45.14 Aligned_cols=24 Identities=33% Similarity=0.343 Sum_probs=19.7
Q ss_pred cccEEEEecCCccccCHHHHHHHH
Q 016204 232 MTDLILFDLKNFNLVSVDIIYSSH 255 (393)
Q Consensus 232 M~k~iiFD~DGTL~ds~~~~~~~~ 255 (393)
|+|.|+||+||||+++...+....
T Consensus 2 ~~kli~~DlDGTLl~~~~~i~~~~ 25 (264)
T COG0561 2 MIKLLAFDLDGTLLDSNKTISPET 25 (264)
T ss_pred CeeEEEEcCCCCccCCCCccCHHH
Confidence 589999999999999987655444
No 274
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=86.34 E-value=0.91 Score=37.55 Aligned_cols=37 Identities=8% Similarity=0.002 Sum_probs=33.0
Q ss_pred CCCcHHHHHHHHHHhC--CCCCcEEEEecCchhhHHHHHH
Q 016204 305 GKPDKIIYKSAMAMVG--VDACDSIAVGDSLHHDIKGANA 342 (393)
Q Consensus 305 gKP~p~~~~~~~~~lg--i~~~~~v~VGDsl~~Di~~a~~ 342 (393)
.+|+|++|..+++++| ++|++|+||||+ ..+++..++
T Consensus 88 ~~pkp~~~~~a~~~lg~~~~p~~~l~igDs-~~n~~~~~~ 126 (128)
T TIGR01681 88 WLPKSPRLVEIALKLNGVLKPKSILFVDDR-PDNNEEVDY 126 (128)
T ss_pred CCcHHHHHHHHHHHhcCCCCcceEEEECCC-HhHHHHHHh
Confidence 4688999999999999 999999999999 699876654
No 275
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=86.33 E-value=5.4 Score=45.15 Aligned_cols=51 Identities=18% Similarity=0.230 Sum_probs=37.4
Q ss_pred CcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCcccCCCCccccCChhHHHHHH
Q 016204 324 CDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATELGLDSYGEVADLSSVQTLV 377 (393)
Q Consensus 324 ~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~~~~~~~~~i~~~~~l~~~l 377 (393)
.-+.|+||+ .||+.|.+.|.+.. ++... ...+....+|.++.++..|.+++
T Consensus 769 ~~vl~iGDG-~ND~~mlk~AdVGI-gi~g~-eg~qA~~aaD~~i~~F~~L~~ll 819 (1057)
T TIGR01652 769 KTTLAIGDG-ANDVSMIQEADVGV-GISGK-EGMQAVMASDFAIGQFRFLTKLL 819 (1057)
T ss_pred CeEEEEeCC-CccHHHHhhcCeee-EecCh-HHHHHHHhhhhhhhhHHHHHHHH
Confidence 579999999 79999999998765 44322 11122246888899998888876
No 276
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=86.21 E-value=0.46 Score=43.01 Aligned_cols=62 Identities=19% Similarity=0.176 Sum_probs=47.0
Q ss_pred cccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCcccCCCCcccc
Q 016204 302 RWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATELGLDSYGEV 367 (393)
Q Consensus 302 ~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~~~~~~~~~i 367 (393)
...+.++...++.+++++|++++++++|||+ .||++|++.+|+. +.+.. ..++....++.+.
T Consensus 144 ~~~~~~K~~~i~~l~~~~~i~~~~~i~~GD~-~NDi~m~~~ag~~-vam~N--a~~~~k~~A~~vt 205 (225)
T TIGR01482 144 LPQGVNKGVAVKKLKEKLGIKPGETLVCGDS-ENDIDLFEVPGFG-VAVAN--AQPELKEWADYVT 205 (225)
T ss_pred eeCCCCHHHHHHHHHHHhCCCHHHEEEECCC-HhhHHHHHhcCce-EEcCC--hhHHHHHhcCeec
Confidence 3456677889999999999999999999999 8999999999985 34443 3333333444443
No 277
>PLN03190 aminophospholipid translocase; Provisional
Probab=86.14 E-value=7.2 Score=44.55 Aligned_cols=54 Identities=17% Similarity=0.134 Sum_probs=39.3
Q ss_pred CcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCcccCCCCccccCChhHHHHHHHhc
Q 016204 324 CDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATELGLDSYGEVADLSSVQTLVSKY 380 (393)
Q Consensus 324 ~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~~~~~~~~~i~~~~~l~~~l~~~ 380 (393)
.-++||||. .||+.|.++|.+.. ++. |.--.+....+|+.|..|.-|.++|--.
T Consensus 872 ~vtlaIGDG-aNDv~mIq~AdVGI-GIs-G~EG~qA~~aSDfaI~~Fr~L~rLLlvH 925 (1178)
T PLN03190 872 DMTLAIGDG-ANDVSMIQMADVGV-GIS-GQEGRQAVMASDFAMGQFRFLVPLLLVH 925 (1178)
T ss_pred cEEEEECCC-cchHHHHHhcCeee-eec-CchhHHHHHhhccchhhhHHHHHHHHHh
Confidence 458999999 79999999997765 443 3222233346888999999988876533
No 278
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=86.03 E-value=0.42 Score=41.74 Aligned_cols=16 Identities=6% Similarity=0.038 Sum_probs=13.6
Q ss_pred EEEEecCCccccCHHH
Q 016204 235 LILFDLKNFNLVSVDI 250 (393)
Q Consensus 235 ~iiFD~DGTL~ds~~~ 250 (393)
.++|||||||+++...
T Consensus 3 ~iiFD~dgTL~~~~~~ 18 (188)
T TIGR01489 3 VVVSDFDGTITLNDSD 18 (188)
T ss_pred EEEEeCCCcccCCCch
Confidence 5899999999998554
No 279
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=85.96 E-value=0.41 Score=42.02 Aligned_cols=17 Identities=18% Similarity=0.190 Sum_probs=14.9
Q ss_pred hcccEEEEecCCccccC
Q 016204 231 RMTDLILFDLKNFNLVS 247 (393)
Q Consensus 231 ~M~k~iiFD~DGTL~ds 247 (393)
+|+|.++||+||||+-.
T Consensus 1 ~~~~~~~~d~~~t~~~~ 17 (181)
T PRK08942 1 KSMKAIFLDRDGVINVD 17 (181)
T ss_pred CCccEEEEECCCCcccC
Confidence 48899999999999764
No 280
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=85.72 E-value=1.6 Score=38.13 Aligned_cols=41 Identities=15% Similarity=0.201 Sum_probs=29.3
Q ss_pred cHHHHHHHHHHCCCeEEEEcCCCCC-chHHHHHHHhCCCCCcc
Q 016204 50 GAISTLEMLATTGAKMVVISNSSRR-ASTTIDKLKSLGFDPSL 91 (393)
Q Consensus 50 ga~eal~~L~~~G~~v~~~TN~~~~-~~~~~~~l~~lG~~~~~ 91 (393)
-|++.|++-+++|-+++|+|+.++. .+...+.|.+ .|++..
T Consensus 118 vA~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak-~F~i~~ 159 (237)
T COG3700 118 VARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAK-NFHITN 159 (237)
T ss_pred HHHHHHHHHHhcCCeEEEEecCCCCcccccchhHHh-hcccCC
Confidence 3889999999999999999976643 3556665543 344443
No 281
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=85.09 E-value=0.54 Score=43.31 Aligned_cols=20 Identities=20% Similarity=0.277 Sum_probs=16.1
Q ss_pred EEEecCCccccCHHHHHHHH
Q 016204 236 ILFDLKNFNLVSVDIIYSSH 255 (393)
Q Consensus 236 iiFD~DGTL~ds~~~~~~~~ 255 (393)
++||+||||+++...+..+.
T Consensus 1 ~lfD~DGvL~~~~~~~~~a~ 20 (236)
T TIGR01460 1 FLFDIDGVLWLGHKPIPGAA 20 (236)
T ss_pred CEEeCcCccCcCCccCcCHH
Confidence 58999999999987755444
No 282
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=85.08 E-value=1.5 Score=39.08 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=30.6
Q ss_pred cEEEEeccccccCCCcCC-ccHHHHHHHHHHCCCeEEEEc
Q 016204 31 KAWLLDQFGVLHDGKKPY-PGAISTLEMLATTGAKMVVIS 69 (393)
Q Consensus 31 k~i~~DlDGtL~~g~~~i-pga~eal~~L~~~G~~v~~~T 69 (393)
-+++||.||||.-.+..+ |...+.|+.||+. ..+-++-
T Consensus 12 ~l~lfdvdgtLt~~r~~~~~e~~~~l~~lr~~-v~ig~Vg 50 (252)
T KOG3189|consen 12 TLCLFDVDGTLTPPRQKVTPEMLEFLQKLRKK-VTIGFVG 50 (252)
T ss_pred eEEEEecCCccccccccCCHHHHHHHHHHhhh-eEEEEee
Confidence 388999999999866555 8899999998775 6666666
No 283
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=85.05 E-value=0.31 Score=42.25 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=13.9
Q ss_pred EEEEeccccccCCCcCC
Q 016204 32 AWLLDQFGVLHDGKKPY 48 (393)
Q Consensus 32 ~i~~DlDGtL~~g~~~i 48 (393)
+++||+||||++....+
T Consensus 1 ~viFD~DGTL~D~~~~~ 17 (175)
T TIGR01493 1 AMVFDVYGTLVDVHGGV 17 (175)
T ss_pred CeEEecCCcCcccHHHH
Confidence 47999999999977544
No 284
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=84.75 E-value=0.44 Score=40.84 Aligned_cols=14 Identities=14% Similarity=0.263 Sum_probs=13.0
Q ss_pred ccEEEEecCCcccc
Q 016204 233 TDLILFDLKNFNLV 246 (393)
Q Consensus 233 ~k~iiFD~DGTL~d 246 (393)
+|+++||+||||++
T Consensus 1 ~~~~~~D~Dgtl~~ 14 (154)
T TIGR01670 1 IRLLILDVDGVLTD 14 (154)
T ss_pred CeEEEEeCceeEEc
Confidence 58899999999998
No 285
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=84.09 E-value=0.56 Score=44.56 Aligned_cols=44 Identities=11% Similarity=0.092 Sum_probs=35.1
Q ss_pred CCCcHHHHHHHHHHhCCC--CCcEEEEecCchhhHHHHHHcCCeEEE
Q 016204 305 GKPDKIIYKSAMAMVGVD--ACDSIAVGDSLHHDIKGANAAGIQSVF 349 (393)
Q Consensus 305 gKP~p~~~~~~~~~lgi~--~~~~v~VGDsl~~Di~~a~~aG~~~i~ 349 (393)
+-++......+.+.+.-. +-.++.+||+ +||+.|.+.+-+..|.
T Consensus 206 ~~dKg~A~~~L~~~y~~~~~~~~tiaLGDs-pND~~mLe~~D~~vvi 251 (302)
T PRK12702 206 SLPGEQAVQLLLDCYQRHLGPIKALGIGCS-PPDLAFLRWSEQKVVL 251 (302)
T ss_pred CCCHHHHHHHHHHHHHhccCCceEEEecCC-hhhHHHHHhCCeeEEe
Confidence 335577888888877653 4489999999 7999999999998765
No 286
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=83.80 E-value=0.6 Score=42.30 Aligned_cols=31 Identities=13% Similarity=-0.105 Sum_probs=22.7
Q ss_pred HHhCCCCCcEEEEecCchhhHHHHHHcCCeEE
Q 016204 317 AMVGVDACDSIAVGDSLHHDIKGANAAGIQSV 348 (393)
Q Consensus 317 ~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i 348 (393)
+.++.+.+.+.+.||| .+|+.|...+|-+.+
T Consensus 169 ~~~~~~~~~~~aYsDS-~~D~pmL~~a~~~~~ 199 (210)
T TIGR01545 169 QKIGSPLKLYSGYSDS-KQDNPLLAFCEHRWR 199 (210)
T ss_pred HHhCCChhheEEecCC-cccHHHHHhCCCcEE
Confidence 3445556677888999 689988888887653
No 287
>PLN02887 hydrolase family protein
Probab=82.89 E-value=0.72 Score=48.31 Aligned_cols=19 Identities=21% Similarity=0.111 Sum_probs=16.5
Q ss_pred cccEEEEecCCccccCHHH
Q 016204 232 MTDLILFDLKNFNLVSVDI 250 (393)
Q Consensus 232 M~k~iiFD~DGTL~ds~~~ 250 (393)
|+|.|+||+||||+++...
T Consensus 307 ~iKLIa~DLDGTLLn~d~~ 325 (580)
T PLN02887 307 KFSYIFCDMDGTLLNSKSQ 325 (580)
T ss_pred CccEEEEeCCCCCCCCCCc
Confidence 5899999999999997543
No 288
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=82.69 E-value=0.62 Score=41.12 Aligned_cols=16 Identities=13% Similarity=0.117 Sum_probs=14.3
Q ss_pred cccEEEEecCCccccC
Q 016204 232 MTDLILFDLKNFNLVS 247 (393)
Q Consensus 232 M~k~iiFD~DGTL~ds 247 (393)
.+|+|+||+||||++.
T Consensus 20 ~ikli~~D~Dgtl~~~ 35 (183)
T PRK09484 20 NIRLLICDVDGVFSDG 35 (183)
T ss_pred CceEEEEcCCeeeecC
Confidence 3899999999999984
No 289
>PRK08508 biotin synthase; Provisional
Probab=82.55 E-value=44 Score=31.53 Aligned_cols=61 Identities=10% Similarity=0.008 Sum_probs=39.0
Q ss_pred CCcEEEEeccccccCCCcCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCc
Q 016204 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (393)
Q Consensus 29 ~~k~i~~DlDGtL~~g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~ 90 (393)
..+.|.+ +++........++...+.++.+++.+..+.+.++++..+.+.+++|++.|++..
T Consensus 56 g~~~~~l-v~sg~~~~~~~~e~~~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~~ 116 (279)
T PRK08508 56 GALGFCL-VTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSY 116 (279)
T ss_pred CCCEEEE-EeccCCCCcccHHHHHHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCEE
Confidence 3455555 332222223345667899999998875555555556667888888988888643
No 290
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=82.51 E-value=0.64 Score=42.22 Aligned_cols=52 Identities=13% Similarity=0.164 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhCCCC--CcEEEEecCchhh----------------HHHHHHcCCe---EEEEcCCCCCcccC
Q 016204 309 KIIYKSAMAMVGVDA--CDSIAVGDSLHHD----------------IKGANAAGIQ---SVFIIGGIHATELG 360 (393)
Q Consensus 309 p~~~~~~~~~lgi~~--~~~v~VGDsl~~D----------------i~~a~~aG~~---~i~v~~G~~~~~~~ 360 (393)
....+.+++++|++. .+.+.+.|...++ .+.++..|+. ++.|..|.++...+
T Consensus 104 ~~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~~~~~g~~~~~~~a~gDs~nDlpml 176 (212)
T COG0560 104 TFLVEPIAERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALRELAAELGIPLEETVAYGDSANDLPML 176 (212)
T ss_pred HHHHHHHHHHhCCchheeeEEEEeCCEEeceeeeeecCcchHHHHHHHHHHHcCCCHHHeEEEcCchhhHHHH
Confidence 367777888888743 3455555421111 1455566776 77777777665544
No 291
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=82.35 E-value=17 Score=39.63 Aligned_cols=61 Identities=20% Similarity=0.268 Sum_probs=45.4
Q ss_pred hhcCCcEEEEeccccccC----CCcCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCC
Q 016204 26 ETRRFKAWLLDQFGVLHD----GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (393)
Q Consensus 26 ~~~~~k~i~~DlDGtL~~----g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~ 88 (393)
+.+..-.+.+=+||+|.- .+++-|+|..+++.|++.|++++++|+.-+.+ .....+++|++
T Consensus 699 e~~g~tvv~v~vn~~l~gv~~l~D~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~a--A~svA~~VGi~ 763 (951)
T KOG0207|consen 699 ERKGQTVVYVAVNGQLVGVFALEDQVRPDAALAVAELKSMGIKVVMLTGDNDAA--ARSVAQQVGID 763 (951)
T ss_pred hhcCceEEEEEECCEEEEEEEeccccchhHHHHHHHHHhcCceEEEEcCCCHHH--HHHHHHhhCcc
Confidence 344677888888988653 77888999999999999999999999643333 22223457764
No 292
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=81.35 E-value=0.84 Score=42.89 Aligned_cols=48 Identities=13% Similarity=0.071 Sum_probs=39.9
Q ss_pred ccCCCcHHHHHHHHHHhCC---CCCcEEEEecCchhhHHHHHHcCCeEEEEcC
Q 016204 303 WMGKPDKIIYKSAMAMVGV---DACDSIAVGDSLHHDIKGANAAGIQSVFIIG 352 (393)
Q Consensus 303 ~~gKP~p~~~~~~~~~lgi---~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~ 352 (393)
..+-.+...++.+++++|+ +++++++|||+ .||++|.+.+|.. |.+..
T Consensus 183 ~~g~sKg~al~~l~~~lgi~~~~~~~viafGDs-~NDi~Ml~~ag~g-vAM~~ 233 (271)
T PRK03669 183 DASAGKDQAANWLIATYQQLSGTRPTTLGLGDG-PNDAPLLDVMDYA-VVVKG 233 (271)
T ss_pred cCCCCHHHHHHHHHHHHHhhcCCCceEEEEcCC-HHHHHHHHhCCEE-EEecC
Confidence 3445568899999999999 99999999999 8999999999964 34443
No 293
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=81.31 E-value=0.87 Score=38.54 Aligned_cols=15 Identities=7% Similarity=0.029 Sum_probs=13.1
Q ss_pred cEEEEecCCccccCH
Q 016204 234 DLILFDLKNFNLVSV 248 (393)
Q Consensus 234 k~iiFD~DGTL~ds~ 248 (393)
++++||+||||+++.
T Consensus 1 ~~~~~d~dgtl~~~~ 15 (147)
T TIGR01656 1 PALFLDRDGVINEDT 15 (147)
T ss_pred CeEEEeCCCceeccC
Confidence 578999999999964
No 294
>PLN02423 phosphomannomutase
Probab=81.01 E-value=0.89 Score=42.20 Aligned_cols=30 Identities=13% Similarity=0.021 Sum_probs=27.5
Q ss_pred CCCcEEEEec----CchhhHHHHHHcCCeEEEEcC
Q 016204 322 DACDSIAVGD----SLHHDIKGANAAGIQSVFIIG 352 (393)
Q Consensus 322 ~~~~~v~VGD----sl~~Di~~a~~aG~~~i~v~~ 352 (393)
+++++++||| + .||++|.+.-|+.++-|.+
T Consensus 199 ~~~e~~aFGD~~~~~-~ND~eMl~~~~~~~~~~~~ 232 (245)
T PLN02423 199 DFDEIHFFGDKTYEG-GNDHEIFESERTIGHTVTS 232 (245)
T ss_pred CcCeEEEEeccCCCC-CCcHHHHhCCCcceEEeCC
Confidence 8899999999 7 6999999999999999875
No 295
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=81.01 E-value=13 Score=41.36 Aligned_cols=45 Identities=22% Similarity=0.327 Sum_probs=32.5
Q ss_pred CCcCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCc
Q 016204 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (393)
Q Consensus 44 g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~ 90 (393)
-+.+=|+++++|+.|+++|+++..+|+.. .......-+++|+...
T Consensus 545 ~Dppr~~v~~aI~~l~~AGI~v~MiTGD~--~~TA~aIa~~~Gi~~~ 589 (917)
T COG0474 545 EDPPREDVKEAIEELREAGIKVWMITGDH--VETAIAIAKECGIEAE 589 (917)
T ss_pred cCCCCccHHHHHHHHHHCCCcEEEECCCC--HHHHHHHHHHcCCCCC
Confidence 45666899999999999999999999543 3333333446776533
No 296
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=80.64 E-value=0.82 Score=39.95 Aligned_cols=15 Identities=13% Similarity=0.297 Sum_probs=13.9
Q ss_pred ccEEEEecCCccccC
Q 016204 233 TDLILFDLKNFNLVS 247 (393)
Q Consensus 233 ~k~iiFD~DGTL~ds 247 (393)
+|+++||+||||+|.
T Consensus 7 i~~~v~d~dGv~tdg 21 (169)
T TIGR02726 7 IKLVILDVDGVMTDG 21 (169)
T ss_pred CeEEEEeCceeeECC
Confidence 699999999999994
No 297
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=80.43 E-value=4.3 Score=33.93 Aligned_cols=51 Identities=24% Similarity=0.264 Sum_probs=34.9
Q ss_pred EEEEeccccccCCC-cCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHH
Q 016204 32 AWLLDQFGVLHDGK-KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLK 83 (393)
Q Consensus 32 ~i~~DlDGtL~~g~-~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~ 83 (393)
.-++|+||.++.-. .--..-.+.++.+.+.|++++++|.-+.. ....++++
T Consensus 45 iAildL~G~~l~l~S~R~~~~~evi~~I~~~G~PviVAtDV~p~-P~~V~Kia 96 (138)
T PF04312_consen 45 IAILDLDGELLDLKSSRNMSRSEVIEWISEYGKPVIVATDVSPP-PETVKKIA 96 (138)
T ss_pred EEEEecCCcEEEEEeecCCCHHHHHHHHHHcCCEEEEEecCCCC-cHHHHHHH
Confidence 45799999987622 11234678889999999999999953322 34455554
No 298
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=79.94 E-value=2.2 Score=38.63 Aligned_cols=15 Identities=20% Similarity=0.266 Sum_probs=14.0
Q ss_pred CCcEEEEeccccccC
Q 016204 29 RFKAWLLDQFGVLHD 43 (393)
Q Consensus 29 ~~k~i~~DlDGtL~~ 43 (393)
+++.++||+|-||+.
T Consensus 14 ~~~~l~FDiDdtLYp 28 (244)
T KOG3109|consen 14 NYKCLFFDIDDTLYP 28 (244)
T ss_pred cceEEEEeccccccc
Confidence 689999999999996
No 299
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=79.54 E-value=4 Score=43.80 Aligned_cols=54 Identities=24% Similarity=0.375 Sum_probs=41.7
Q ss_pred EEEEecccc----ccCCCcCCccHHHHHHHHHHCCCeEEEEcCCCCCc-hHHHHHHHhCCCC
Q 016204 32 AWLLDQFGV----LHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRA-STTIDKLKSLGFD 88 (393)
Q Consensus 32 ~i~~DlDGt----L~~g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~-~~~~~~l~~lG~~ 88 (393)
.+++=.||. +.-.+++=|+++++|++|+++|++++++|+..+.. +.++ +++|++
T Consensus 519 ~v~va~dg~~~g~i~~~D~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA---~~lGId 577 (713)
T COG2217 519 VVFVAVDGKLVGVIALADELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIA---KELGID 577 (713)
T ss_pred EEEEEECCEEEEEEEEeCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH---HHcChH
Confidence 578888885 34477888999999999999999999999754444 3444 457884
No 300
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=79.36 E-value=1.1 Score=38.77 Aligned_cols=14 Identities=14% Similarity=0.142 Sum_probs=12.2
Q ss_pred EEEecCCccccCHH
Q 016204 236 ILFDLKNFNLVSVD 249 (393)
Q Consensus 236 iiFD~DGTL~ds~~ 249 (393)
++|||||||++...
T Consensus 2 ~~fD~DgTl~~~~s 15 (177)
T TIGR01488 2 AIFDFDGTLTRQDS 15 (177)
T ss_pred EEecCccccccchh
Confidence 79999999998655
No 301
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=79.12 E-value=1.1 Score=39.85 Aligned_cols=15 Identities=33% Similarity=0.257 Sum_probs=13.3
Q ss_pred EEEEecCCccccCHH
Q 016204 235 LILFDLKNFNLVSVD 249 (393)
Q Consensus 235 ~iiFD~DGTL~ds~~ 249 (393)
+||||+||||+|+..
T Consensus 2 ~viFDldgvL~d~~~ 16 (199)
T PRK09456 2 LYIFDLGNVIVDIDF 16 (199)
T ss_pred EEEEeCCCccccCcH
Confidence 689999999999854
No 302
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=79.04 E-value=2.5 Score=36.91 Aligned_cols=31 Identities=26% Similarity=0.233 Sum_probs=25.7
Q ss_pred HHHHHHH---HHHhCCCCCcEEEEecCchhhHHHHH
Q 016204 309 KIIYKSA---MAMVGVDACDSIAVGDSLHHDIKGAN 341 (393)
Q Consensus 309 p~~~~~~---~~~lgi~~~~~v~VGDsl~~Di~~a~ 341 (393)
...++.+ ... +.+...+++|||+ .+|+.+++
T Consensus 159 ~~~l~~~~~~~~~-~~~~~~~~~iGDs-~~D~~~lr 192 (192)
T PF12710_consen 159 AEALKELYIRDEE-DIDPDRVIAIGDS-INDLPMLR 192 (192)
T ss_dssp HHHHHHHHHHHHH-THTCCEEEEEESS-GGGHHHHH
T ss_pred HHHHHHHHHHhhc-CCCCCeEEEEECC-HHHHHHhC
Confidence 5677777 445 7888999999999 79999985
No 303
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=78.99 E-value=6.1 Score=37.66 Aligned_cols=63 Identities=14% Similarity=0.184 Sum_probs=46.2
Q ss_pred CCcEEEEeccccccCCCcCCccHHHHHHHHHHCC-CeEEEEcCCCCCchHHHHHHHhCCCCCcccceEEeCchhHHH
Q 016204 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTG-AKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQ 104 (393)
Q Consensus 29 ~~k~i~~DlDGtL~~g~~~ipga~eal~~L~~~G-~~v~~~TN~~~~~~~~~~~l~~lG~~~~~~~~iits~~~~~~ 104 (393)
.++.+.|=++| ..+++|.--|.|+.+++.| ++++++||++. ..+.+.| .. . ++++-|-.+.-.
T Consensus 79 ~pd~vtis~~G----EPTLy~~L~elI~~~k~~g~~~tflvTNgsl--pdv~~~L---~~---~-dql~~sLdA~~~ 142 (296)
T COG0731 79 EPDHVTISLSG----EPTLYPNLGELIEEIKKRGKKTTFLVTNGSL--PDVLEEL---KL---P-DQLYVSLDAPDE 142 (296)
T ss_pred CCCEEEEeCCC----CcccccCHHHHHHHHHhcCCceEEEEeCCCh--HHHHHHh---cc---C-CEEEEEeccCCH
Confidence 56777777777 6677799999999999999 79999999987 4444444 22 2 666666555443
No 304
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=78.73 E-value=1.1 Score=38.85 Aligned_cols=16 Identities=19% Similarity=0.316 Sum_probs=14.2
Q ss_pred c-ccEEEEecCCccccC
Q 016204 232 M-TDLILFDLKNFNLVS 247 (393)
Q Consensus 232 M-~k~iiFD~DGTL~ds 247 (393)
| .|.++||+||||+++
T Consensus 11 ~~~k~~~~D~Dgtl~~~ 27 (166)
T TIGR01664 11 PQSKVAAFDLDGTLITT 27 (166)
T ss_pred CcCcEEEEeCCCceEec
Confidence 5 689999999999984
No 305
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=78.51 E-value=2 Score=42.03 Aligned_cols=44 Identities=30% Similarity=0.391 Sum_probs=36.9
Q ss_pred CCcEEEEeccccccCCC-------------cCCccHHHHHHHHHHCCCeEEEEcCCC
Q 016204 29 RFKAWLLDQFGVLHDGK-------------KPYPGAISTLEMLATTGAKMVVISNSS 72 (393)
Q Consensus 29 ~~k~i~~DlDGtL~~g~-------------~~ipga~eal~~L~~~G~~v~~~TN~~ 72 (393)
..|.+.||+||||++.. -..|....=|+.|...|+.++|.||..
T Consensus 74 ~~K~i~FD~dgtlI~t~sg~vf~~~~~dw~~l~~~vp~Klktl~~~g~~l~iftnq~ 130 (422)
T KOG2134|consen 74 GSKIIMFDYDGTLIDTKSGKVFPKGSMDWRILFPEVPSKLKTLYQDGIKLFIFTNQN 130 (422)
T ss_pred CcceEEEecCCceeecCCcceeeccCccceeeccccchhhhhhccCCeEEEEEeccc
Confidence 56899999999998732 345788889999999999999999953
No 306
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=77.62 E-value=4.3 Score=37.75 Aligned_cols=60 Identities=22% Similarity=0.269 Sum_probs=41.4
Q ss_pred EEEEeccccccCCC----------------------cCC-----ccHHHHHHHHHHC------CCeEEEEcCCCCCc-hH
Q 016204 32 AWLLDQFGVLHDGK----------------------KPY-----PGAISTLEMLATT------GAKMVVISNSSRRA-ST 77 (393)
Q Consensus 32 ~i~~DlDGtL~~g~----------------------~~i-----pga~eal~~L~~~------G~~v~~~TN~~~~~-~~ 77 (393)
-|+||-|+||..+. .++ -.-.++|.+|+++ -++++++|-.+.++ +.
T Consensus 123 RIAFDgDaVLfsDesE~vy~~~GL~~F~~~E~~~a~~Pl~~GP~~~fl~~L~~lQ~~~~~~~~piRtalVTAR~apah~R 202 (264)
T PF06189_consen 123 RIAFDGDAVLFSDESERVYQEQGLEAFHEHEKENADKPLPEGPFKDFLKKLSKLQKKFPPENSPIRTALVTARSAPAHER 202 (264)
T ss_pred EEEEcCCeEeecCcchHhHHhccHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHhcCCCCCceEEEEEEcCCCchhHH
Confidence 37999999998722 223 3345566666654 46789999655444 57
Q ss_pred HHHHHHhCCCCCcc
Q 016204 78 TIDKLKSLGFDPSL 91 (393)
Q Consensus 78 ~~~~l~~lG~~~~~ 91 (393)
..+-|+.+|+.+..
T Consensus 203 vI~TLr~Wgv~vDE 216 (264)
T PF06189_consen 203 VIRTLRSWGVRVDE 216 (264)
T ss_pred HHHHHHHcCCcHhH
Confidence 88899999998664
No 307
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=77.37 E-value=2.3 Score=41.68 Aligned_cols=46 Identities=26% Similarity=0.252 Sum_probs=34.5
Q ss_pred ccCCCcHHHHHHHHHHhC----CCCCcEEEEecCc--------------hhhHHHHHHcCCeEE
Q 016204 303 WMGKPDKIIYKSAMAMVG----VDACDSIAVGDSL--------------HHDIKGANAAGIQSV 348 (393)
Q Consensus 303 ~~gKP~p~~~~~~~~~lg----i~~~~~v~VGDsl--------------~~Di~~a~~aG~~~i 348 (393)
...||.-.+++...+..+ +....++++||.. ..|+..|.++|+...
T Consensus 167 ~yRKP~tGMwe~~~~~~nd~~~Isek~s~fvgdaagr~~~~~~~kkd~S~~D~~FAaN~gvkF~ 230 (422)
T KOG2134|consen 167 KYRKPSTGMWEFLKRLENDSVEISEKASIFVGDAAGRPLDALRRKKDHSSADRKFAANAGVKFK 230 (422)
T ss_pred cccCcchhHHHHHHHHhhccceeeechhhhhhhhccCccccccCcccccHHHHHHHHhcCCccC
Confidence 578999999999997775 3444556777631 468999999998754
No 308
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=76.73 E-value=3.6 Score=33.85 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=23.1
Q ss_pred CCccHHHHHHHHHHCCCeEEEEcCCC
Q 016204 47 PYPGAISTLEMLATTGAKMVVISNSS 72 (393)
Q Consensus 47 ~ipga~eal~~L~~~G~~v~~~TN~~ 72 (393)
.++.+...|..|+++|+.++.+||.-
T Consensus 45 fY~Di~rIL~dLk~~GVtl~~ASRt~ 70 (144)
T KOG4549|consen 45 FYDDIRRILVDLKKLGVTLIHASRTM 70 (144)
T ss_pred eccchhHHHHHHHhcCcEEEEecCCC
Confidence 46899999999999999999999754
No 309
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=76.53 E-value=3.4 Score=36.00 Aligned_cols=38 Identities=29% Similarity=0.453 Sum_probs=27.7
Q ss_pred ccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCC
Q 016204 49 PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (393)
Q Consensus 49 pga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~ 88 (393)
|++.+.|+.++++|++++++|.+. ..-+...++.+|++
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~--~~~i~~~~~~~~i~ 129 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSP--DEIIEPIAERLGID 129 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEE--HHHHHHHHHHTTSS
T ss_pred hhHHHHHHHHHHCCCEEEEECCCc--HHHHHHHHHHcCCC
Confidence 666699999999999999999543 22333334467886
No 310
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=76.34 E-value=5.6 Score=39.59 Aligned_cols=63 Identities=13% Similarity=0.127 Sum_probs=43.3
Q ss_pred CCcEEEEeccccccCCCc-----------C-CccHHHHHHHHHHCCCeEEEEcCCCCC----chHHHHHHHhCCCCCcc
Q 016204 29 RFKAWLLDQFGVLHDGKK-----------P-YPGAISTLEMLATTGAKMVVISNSSRR----ASTTIDKLKSLGFDPSL 91 (393)
Q Consensus 29 ~~k~i~~DlDGtL~~g~~-----------~-ipga~eal~~L~~~G~~v~~~TN~~~~----~~~~~~~l~~lG~~~~~ 91 (393)
+.+.|++||||||+..+- . -.|+...--...++|+++..+|..+.. ++.+..-..+-|.....
T Consensus 374 n~kiVVsDiDGTITkSD~~Ghv~~miGkdwth~gVAkLYtdI~rNGYkI~YltsR~~Gqa~sTrsylrnieQngykLpd 452 (580)
T COG5083 374 NKKIVVSDIDGTITKSDALGHVKQMIGKDWTHNGVAKLYTDIDRNGYKIKYLTSRSYGQADSTRSYLRNIEQNGYKLPD 452 (580)
T ss_pred CCcEEEEecCCcEEehhhHHHHHHHhccchhhcchhhhhhhhccCceEEEEEecccccchhhhhhHHHhhhhcCccCCC
Confidence 568999999999987432 2 257888888888999999999954321 23344444455655444
No 311
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=76.23 E-value=1.4 Score=39.14 Aligned_cols=15 Identities=13% Similarity=0.211 Sum_probs=12.6
Q ss_pred EEEecCCccccCHHH
Q 016204 236 ILFDLKNFNLVSVDI 250 (393)
Q Consensus 236 iiFD~DGTL~ds~~~ 250 (393)
++||+||||+++...
T Consensus 2 a~FD~DgTL~~~~s~ 16 (202)
T TIGR01490 2 AFFDFDGTLTAKDTL 16 (202)
T ss_pred eEEccCCCCCCCchH
Confidence 689999999997543
No 312
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=76.18 E-value=9.4 Score=29.96 Aligned_cols=56 Identities=11% Similarity=0.120 Sum_probs=43.9
Q ss_pred CCcEEEEeccccccCCCcCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCC
Q 016204 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (393)
Q Consensus 29 ~~k~i~~DlDGtL~~g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~ 88 (393)
..+.+++|+-||=+-+..-+---.+..++++++|+++.++. . ...+.+.|...|+.
T Consensus 38 ~~~~vilDls~v~~iDssgi~~L~~~~~~~~~~g~~l~l~~--~--~~~v~~~l~~~gl~ 93 (106)
T TIGR02886 38 PIKHLILNLKNVTFMDSSGLGVILGRYKKIKNEGGEVIVCN--V--SPAVKRLFELSGLF 93 (106)
T ss_pred CCCEEEEECCCCcEecchHHHHHHHHHHHHHHcCCEEEEEe--C--CHHHHHHHHHhCCc
Confidence 56899999999988877777667788999999999999877 2 24556667677774
No 313
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=75.87 E-value=19 Score=34.75 Aligned_cols=44 Identities=16% Similarity=0.235 Sum_probs=31.8
Q ss_pred CCCcCC--ccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCC
Q 016204 43 DGKKPY--PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGF 87 (393)
Q Consensus 43 ~g~~~i--pga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~ 87 (393)
.|++|+ |...+.++.++++|+.+.+.||.....+. +..+...|.
T Consensus 79 ~GGEPLL~pdl~eiv~~~~~~g~~v~l~TNG~ll~~~-~~~l~~~~~ 124 (318)
T TIGR03470 79 PGGEPLLHPEIDEIVRGLVARKKFVYLCTNALLLEKK-LDKFEPSPY 124 (318)
T ss_pred eCccccccccHHHHHHHHHHcCCeEEEecCceehHHH-HHHHHhCCC
Confidence 355554 88999999999999999999997654433 444544443
No 314
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=75.85 E-value=1.5 Score=40.13 Aligned_cols=41 Identities=17% Similarity=0.251 Sum_probs=34.4
Q ss_pred CcHHHHHHHHHHhCC--CCCcEEEEecCchhhHHHHHHcCCeEE
Q 016204 307 PDKIIYKSAMAMVGV--DACDSIAVGDSLHHDIKGANAAGIQSV 348 (393)
Q Consensus 307 P~p~~~~~~~~~lgi--~~~~~v~VGDsl~~Di~~a~~aG~~~i 348 (393)
.++...+.+++.+++ +++++++|||+ .||++|.+.+|+..+
T Consensus 181 sK~~al~~l~~~~~~~~~~~~~i~~GD~-~nD~~ml~~ag~~v~ 223 (225)
T TIGR02461 181 DKGKAIKRLLDLYKLRPGAIESVGLGDS-ENDFPMFEVVDLAFL 223 (225)
T ss_pred CHHHHHHHHHHHhccccCcccEEEEcCC-HHHHHHHHhCCCcEe
Confidence 346688888888866 77799999999 799999999998654
No 315
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=75.69 E-value=1.3 Score=41.24 Aligned_cols=30 Identities=20% Similarity=0.171 Sum_probs=21.4
Q ss_pred ccEEEEecCCccccCHHHHHHHH----HHHhcCC
Q 016204 233 TDLILFDLKNFNLVSVDIIYSSH----KLLSRNF 262 (393)
Q Consensus 233 ~k~iiFD~DGTL~ds~~~~~~~~----~l~~~~~ 262 (393)
+|.++||+||||+++...+..+. .+.+.|.
T Consensus 1 ~~~~~~D~DGtl~~~~~~i~~a~~~l~~l~~~g~ 34 (249)
T TIGR01457 1 YKGYLIDLDGTMYKGKERIPEAETFVHELQKRDI 34 (249)
T ss_pred CCEEEEeCCCceEcCCeeCcCHHHHHHHHHHCCC
Confidence 37899999999999877655444 4444443
No 316
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=75.15 E-value=1.3 Score=41.47 Aligned_cols=17 Identities=18% Similarity=0.245 Sum_probs=14.8
Q ss_pred ccEEEEecCCccccCHH
Q 016204 233 TDLILFDLKNFNLVSVD 249 (393)
Q Consensus 233 ~k~iiFD~DGTL~ds~~ 249 (393)
+|+++||+||||++...
T Consensus 1 ~k~i~~D~DGtl~~~~~ 17 (257)
T TIGR01458 1 VKGVLLDISGVLYISDA 17 (257)
T ss_pred CCEEEEeCCCeEEeCCC
Confidence 47899999999999765
No 317
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=75.01 E-value=4.2 Score=43.45 Aligned_cols=57 Identities=18% Similarity=0.142 Sum_probs=40.7
Q ss_pred CcEEEEecc----ccccCCCcCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCC
Q 016204 30 FKAWLLDQF----GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (393)
Q Consensus 30 ~k~i~~DlD----GtL~~g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~ 88 (393)
.+.+++-.| |++.-.+.+=|++++++++||+.|++++++|+. .........+++|++
T Consensus 426 ~r~l~va~~~~~lG~i~l~D~~Rp~a~eaI~~l~~~Gi~v~miTGD--~~~ta~~iA~~lGI~ 486 (675)
T TIGR01497 426 GTPLVVCEDNRIYGVIYLKDIVKGGIKERFAQLRKMGIKTIMITGD--NRLTAAAIAAEAGVD 486 (675)
T ss_pred CeEEEEEECCEEEEEEEecccchhHHHHHHHHHHHCCCEEEEEcCC--CHHHHHHHHHHcCCC
Confidence 455665444 445556777799999999999999999999953 333344444567884
No 318
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=75.00 E-value=1.5 Score=39.49 Aligned_cols=14 Identities=14% Similarity=0.306 Sum_probs=11.8
Q ss_pred cEEEEecCCccccC
Q 016204 234 DLILFDLKNFNLVS 247 (393)
Q Consensus 234 k~iiFD~DGTL~ds 247 (393)
..++|||||||++.
T Consensus 2 ~la~FDlD~TLi~~ 15 (203)
T TIGR02137 2 EIACLDLEGVLVPE 15 (203)
T ss_pred eEEEEeCCcccHHH
Confidence 35899999999974
No 319
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=74.75 E-value=1.3 Score=35.61 Aligned_cols=15 Identities=40% Similarity=0.401 Sum_probs=12.5
Q ss_pred EEEEecCCccccCHH
Q 016204 235 LILFDLKNFNLVSVD 249 (393)
Q Consensus 235 ~iiFD~DGTL~ds~~ 249 (393)
+++||+||||+.+..
T Consensus 1 ~~vfD~D~tl~~~~~ 15 (139)
T cd01427 1 AVLFDLDGTLLDSEP 15 (139)
T ss_pred CeEEccCCceEccCc
Confidence 379999999998654
No 320
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=74.33 E-value=6.4 Score=36.31 Aligned_cols=13 Identities=15% Similarity=0.128 Sum_probs=11.5
Q ss_pred cEEEEecCCcccc
Q 016204 234 DLILFDLKNFNLV 246 (393)
Q Consensus 234 k~iiFD~DGTL~d 246 (393)
.+++||+||||+.
T Consensus 4 ~~l~lD~DGTL~~ 16 (244)
T TIGR00685 4 RAFFFDYDGTLSE 16 (244)
T ss_pred EEEEEecCccccC
Confidence 4789999999997
No 321
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=74.05 E-value=1.5 Score=37.37 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=12.9
Q ss_pred HHHHHhCCCCCcEEEEecCc
Q 016204 314 SAMAMVGVDACDSIAVGDSL 333 (393)
Q Consensus 314 ~~~~~lgi~~~~~v~VGDsl 333 (393)
+-++.+|.+.+++|+|.|++
T Consensus 97 KdL~~l~~~~~~vvivDD~~ 116 (159)
T PF03031_consen 97 KDLSKLGRDLDNVVIVDDSP 116 (159)
T ss_dssp --GGGSSS-GGGEEEEES-G
T ss_pred cchHHHhhccccEEEEeCCH
Confidence 44555677889999999994
No 322
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=73.63 E-value=1.8 Score=37.28 Aligned_cols=14 Identities=21% Similarity=0.441 Sum_probs=10.8
Q ss_pred cEEEEecCCccccC
Q 016204 234 DLILFDLKNFNLVS 247 (393)
Q Consensus 234 k~iiFD~DGTL~ds 247 (393)
|.+.||+||||+.+
T Consensus 1 Kia~fD~DgTLi~~ 14 (159)
T PF08645_consen 1 KIAFFDLDGTLIKT 14 (159)
T ss_dssp SEEEE-SCTTTEE-
T ss_pred CEEEEeCCCCccCC
Confidence 57899999999985
No 323
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=72.76 E-value=4.4 Score=36.74 Aligned_cols=35 Identities=23% Similarity=0.171 Sum_probs=27.5
Q ss_pred CCCCCcEEEEecCchhhHH-HHHHcCCeEEEEcCCCC
Q 016204 320 GVDACDSIAVGDSLHHDIK-GANAAGIQSVFIIGGIH 355 (393)
Q Consensus 320 gi~~~~~v~VGDsl~~Di~-~a~~aG~~~i~v~~G~~ 355 (393)
|+.-++.+||||+ .||+= ..+-.+...+..+.|+.
T Consensus 179 gv~yer~iYvGDG-~nD~CP~l~Lr~~D~ampRkgfp 214 (256)
T KOG3120|consen 179 GVRYERLIYVGDG-ANDFCPVLRLRACDVAMPRKGFP 214 (256)
T ss_pred CCceeeEEEEcCC-CCCcCcchhcccCceecccCCCc
Confidence 6777899999999 89985 45555667777788776
No 324
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=72.27 E-value=5.7 Score=42.50 Aligned_cols=57 Identities=19% Similarity=0.198 Sum_probs=40.1
Q ss_pred CcEEEEecc----ccccCCCcCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCC
Q 016204 30 FKAWLLDQF----GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (393)
Q Consensus 30 ~k~i~~DlD----GtL~~g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~ 88 (393)
.+.+.+=.| |.+.-.+.+=||++|++++||+.|++++.+|+....+ ....-+++|++
T Consensus 425 ~~~l~va~~~~~lG~i~l~D~~R~~~~eai~~Lr~~GI~vvMiTGDn~~T--A~aIA~elGId 485 (679)
T PRK01122 425 GTPLVVAEDNRVLGVIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLT--AAAIAAEAGVD 485 (679)
T ss_pred CcEEEEEECCeEEEEEEEeccCchhHHHHHHHHHHCCCeEEEECCCCHHH--HHHHHHHcCCc
Confidence 455555444 4455577788999999999999999999999644333 22333467884
No 325
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=72.24 E-value=11 Score=34.76 Aligned_cols=12 Identities=33% Similarity=0.382 Sum_probs=10.9
Q ss_pred EEEecCCccccC
Q 016204 236 ILFDLKNFNLVS 247 (393)
Q Consensus 236 iiFD~DGTL~ds 247 (393)
++||+||||++.
T Consensus 2 i~~DlDGTLl~~ 13 (256)
T TIGR00099 2 IFIDLDGTLLND 13 (256)
T ss_pred EEEeCCCCCCCC
Confidence 789999999985
No 326
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=72.20 E-value=9.2 Score=35.30 Aligned_cols=51 Identities=22% Similarity=0.085 Sum_probs=44.3
Q ss_pred cccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCC
Q 016204 302 RWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIH 355 (393)
Q Consensus 302 ~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~ 355 (393)
...|| ...|+.+.+++|-+....++|||. ..--++|+..+++++-+.+...
T Consensus 211 ~kvGK--~~cFe~I~~Rfg~p~~~f~~IGDG-~eEe~aAk~l~wPFw~I~~h~D 261 (274)
T TIGR01658 211 IKVGK--LQCFKWIKERFGHPKVRFCAIGDG-WEECTAAQAMNWPFVKIDLHPD 261 (274)
T ss_pred hhcch--HHHHHHHHHHhCCCCceEEEeCCC-hhHHHHHHhcCCCeEEeecCCC
Confidence 34688 779999999999988899999999 6888999999999999887543
No 327
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=71.77 E-value=2.2 Score=38.58 Aligned_cols=47 Identities=30% Similarity=0.313 Sum_probs=39.8
Q ss_pred ccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEc
Q 016204 303 WMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFII 351 (393)
Q Consensus 303 ~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~ 351 (393)
..+-.+..+++.+++.+|++++++++|||+ .||++|.+.+|.. +.+.
T Consensus 182 ~~~vsK~~ai~~l~~~~~i~~~~~~~~GD~-~ND~~Ml~~~~~~-~am~ 228 (254)
T PF08282_consen 182 PKGVSKGSAIKYLLEYLGISPEDIIAFGDS-ENDIEMLELAGYS-VAMG 228 (254)
T ss_dssp ETTSSHHHHHHHHHHHHTTSGGGEEEEESS-GGGHHHHHHSSEE-EEET
T ss_pred eCCCCHHHHHHHHhhhcccccceeEEeecc-cccHhHHhhcCeE-EEEc
Confidence 334445889999999999999999999999 7999999999876 3444
No 328
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=71.66 E-value=45 Score=36.34 Aligned_cols=45 Identities=13% Similarity=0.347 Sum_probs=33.1
Q ss_pred CcCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCcc
Q 016204 45 KKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSL 91 (393)
Q Consensus 45 ~~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~~ 91 (393)
+.|-|++.+|++.+++.|++|..+|+....++ ...-+++|+....
T Consensus 583 DPPR~ev~~ai~~c~~aGIrV~mITGD~~~TA--~AI~r~iGi~~~~ 627 (972)
T KOG0202|consen 583 DPPRPEVADAIELCRQAGIRVIMITGDNKETA--EAIAREIGIFSED 627 (972)
T ss_pred CCCchhHHHHHHHHHHcCCEEEEEcCCCHHHH--HHHHHHhCCCcCC
Confidence 35668999999999999999999996554443 2233467875444
No 329
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=71.65 E-value=5.9 Score=42.37 Aligned_cols=48 Identities=19% Similarity=0.231 Sum_probs=35.2
Q ss_pred ccccCCCcCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCC
Q 016204 39 GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (393)
Q Consensus 39 GtL~~g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~ 88 (393)
|.+.-.+.+=|++++++++||+.|++++.+|+....+ ....-+++|++
T Consensus 434 G~i~l~Dp~R~~a~e~I~~Lr~~GI~vvMiTGDn~~T--A~aIA~elGI~ 481 (673)
T PRK14010 434 GVIYLKDVIKDGLVERFRELREMGIETVMCTGDNELT--AATIAKEAGVD 481 (673)
T ss_pred EEEEeecCCcHHHHHHHHHHHHCCCeEEEECCCCHHH--HHHHHHHcCCc
Confidence 4445567778999999999999999999999643333 33334467884
No 330
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=71.05 E-value=5.8 Score=31.75 Aligned_cols=55 Identities=18% Similarity=0.236 Sum_probs=44.7
Q ss_pred CcEEEEeccccccCCCcCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCC
Q 016204 30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (393)
Q Consensus 30 ~k~i~~DlDGtL~~g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~ 88 (393)
++.+++|+-++=+-+...+.--.+..+.++++|++++|+. . .....+.|...|+.
T Consensus 48 ~~~vIlD~s~v~~iDssgi~~L~~~~~~~~~~g~~~~l~~--~--~~~v~~~l~~~~~~ 102 (117)
T PF01740_consen 48 IKNVILDMSGVSFIDSSGIQALVDIIKELRRRGVQLVLVG--L--NPDVRRILERSGLI 102 (117)
T ss_dssp SSEEEEEETTESEESHHHHHHHHHHHHHHHHTTCEEEEES--H--HHHHHHHHHHTTGH
T ss_pred ceEEEEEEEeCCcCCHHHHHHHHHHHHHHHHCCCEEEEEE--C--CHHHHHHHHHcCCC
Confidence 5899999999988777777778889999999999999987 1 24566667778874
No 331
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=70.67 E-value=6.4 Score=37.02 Aligned_cols=14 Identities=14% Similarity=0.187 Sum_probs=12.5
Q ss_pred ccEEEEecCCcccc
Q 016204 233 TDLILFDLKNFNLV 246 (393)
Q Consensus 233 ~k~iiFD~DGTL~d 246 (393)
.++++||+||||++
T Consensus 18 ~~~~~lDyDGTl~~ 31 (266)
T COG1877 18 KRLLFLDYDGTLTE 31 (266)
T ss_pred ceEEEEeccccccc
Confidence 36899999999998
No 332
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=69.88 E-value=13 Score=33.13 Aligned_cols=29 Identities=10% Similarity=0.204 Sum_probs=21.3
Q ss_pred cccccccCCCcHHHHHHHHHHhCCCCCcE
Q 016204 298 GGEVRWMGKPDKIIYKSAMAMVGVDACDS 326 (393)
Q Consensus 298 ~~~~~~~gKP~p~~~~~~~~~lgi~~~~~ 326 (393)
+...+..+--...+++.+...||++.++|
T Consensus 104 ~~~v~liSGGF~~~i~~Va~~Lgi~~~n~ 132 (227)
T KOG1615|consen 104 GTQVYLISGGFRQLIEPVAEQLGIPKSNI 132 (227)
T ss_pred CCeEEEEcCChHHHHHHHHHHhCCcHhhh
Confidence 45555556666788999999999988654
No 333
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=69.64 E-value=12 Score=34.16 Aligned_cols=42 Identities=26% Similarity=0.337 Sum_probs=30.4
Q ss_pred cHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeE-EEEc
Q 016204 308 DKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQS-VFII 351 (393)
Q Consensus 308 ~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~-i~v~ 351 (393)
+..+++..++.-+++.+ +++|||| .+|++|.+.+.-.. +.|.
T Consensus 192 ka~i~e~~~ele~~d~s-a~~VGDS-ItDv~ml~~~rgrGglAva 234 (315)
T COG4030 192 KAKIMEGYCELEGIDFS-AVVVGDS-ITDVKMLEAARGRGGLAVA 234 (315)
T ss_pred hhHHHHHHHhhcCCCcc-eeEecCc-ccchHHHHHhhccCceEEE
Confidence 34577777776666554 9999999 69999998875433 5554
No 334
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=69.33 E-value=9.1 Score=36.97 Aligned_cols=79 Identities=18% Similarity=0.272 Sum_probs=50.0
Q ss_pred ccccCCCchhhhhccHHHHhhhcCCcEEEEeccccc--cC----CCcCCccHHHHHHHHHHCCCeEEEEc---CC--CCC
Q 016204 6 SVQSNDPHLFQTLNGLRHIAETRRFKAWLLDQFGVL--HD----GKKPYPGAISTLEMLATTGAKMVVIS---NS--SRR 74 (393)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~DlDGtL--~~----g~~~ipga~eal~~L~~~G~~v~~~T---N~--~~~ 74 (393)
+..||...+-.. +.++.. ..+..|.+.+||.= ++ +...+..+.++|+.|++.|+++.+.| ++ ...
T Consensus 104 ~l~TNG~ll~~~---~~~l~~-~~~~~i~VSLDG~~e~hd~~~~~~g~f~~~l~~I~~l~~~G~~v~v~~tv~~~~n~~e 179 (318)
T TIGR03470 104 YLCTNALLLEKK---LDKFEP-SPYLTFSVHLDGLREHHDASVCREGVFDRAVEAIREAKARGFRVTTNTTLFNDTDPEE 179 (318)
T ss_pred EEecCceehHHH---HHHHHh-CCCcEEEEEEecCchhhchhhcCCCcHHHHHHHHHHHHHCCCcEEEEEEEeCCCCHHH
Confidence 455666554333 344433 13567889999952 22 33455679999999999999887633 21 122
Q ss_pred chHHHHHHHhCCCC
Q 016204 75 ASTTIDKLKSLGFD 88 (393)
Q Consensus 75 ~~~~~~~l~~lG~~ 88 (393)
..++.+.+.++|++
T Consensus 180 i~~~~~~~~~lGv~ 193 (318)
T TIGR03470 180 VAEFFDYLTDLGVD 193 (318)
T ss_pred HHHHHHHHHHcCCC
Confidence 34667777788874
No 335
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=68.03 E-value=3.2 Score=36.27 Aligned_cols=15 Identities=27% Similarity=0.379 Sum_probs=11.9
Q ss_pred ccEEEEecCCccccC
Q 016204 233 TDLILFDLKNFNLVS 247 (393)
Q Consensus 233 ~k~iiFD~DGTL~ds 247 (393)
.|.|+||+|+||++-
T Consensus 3 PklvvFDLD~TlW~~ 17 (169)
T PF12689_consen 3 PKLVVFDLDYTLWPP 17 (169)
T ss_dssp -SEEEE-STTTSSSS
T ss_pred CcEEEEcCcCCCCch
Confidence 589999999999983
No 336
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=67.74 E-value=2.9 Score=37.70 Aligned_cols=43 Identities=14% Similarity=0.110 Sum_probs=37.8
Q ss_pred CCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEE
Q 016204 305 GKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSV 348 (393)
Q Consensus 305 gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i 348 (393)
+-.++..++.+++++|++++++++|||+ .||++|.+.+|...+
T Consensus 177 ~~~Kg~al~~l~~~lgi~~~~vi~~GD~-~NDi~ml~~ag~~va 219 (221)
T TIGR02463 177 SSSKGKAANWLKATYNQPDVKTLGLGDG-PNDLPLLEVADYAVV 219 (221)
T ss_pred CCCHHHHHHHHHHHhCCCCCcEEEECCC-HHHHHHHHhCCceEE
Confidence 3345668999999999999999999999 799999999997654
No 337
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=67.43 E-value=5 Score=35.58 Aligned_cols=13 Identities=31% Similarity=0.398 Sum_probs=11.6
Q ss_pred EEEecCCccccCH
Q 016204 236 ILFDLKNFNLVSV 248 (393)
Q Consensus 236 iiFD~DGTL~ds~ 248 (393)
++||+||||+++.
T Consensus 2 i~~D~DgTL~~~~ 14 (204)
T TIGR01484 2 LFFDLDGTLLDPN 14 (204)
T ss_pred EEEeCcCCCcCCC
Confidence 7899999999865
No 338
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=67.43 E-value=9.1 Score=32.20 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=21.2
Q ss_pred cCCccHHHHHHHHHHCCCeEEEEcCCC
Q 016204 46 KPYPGAISTLEMLATTGAKMVVISNSS 72 (393)
Q Consensus 46 ~~ipga~eal~~L~~~G~~v~~~TN~~ 72 (393)
.++|+|.+++++|-+. ..|+++|...
T Consensus 68 ~V~p~aq~v~keLt~~-y~vYivtaam 93 (180)
T COG4502 68 GVQPFAQTVLKELTSI-YNVYIVTAAM 93 (180)
T ss_pred CccccHHHHHHHHHhh-heEEEEEecc
Confidence 5689999999999776 7888988653
No 339
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=67.20 E-value=29 Score=33.57 Aligned_cols=48 Identities=19% Similarity=0.295 Sum_probs=34.1
Q ss_pred cccCCCcCC--ccHHHHHHHHHHCCC--eEEEEcCCCCCchHHHHHHHhCCCC
Q 016204 40 VLHDGKKPY--PGAISTLEMLATTGA--KMVVISNSSRRASTTIDKLKSLGFD 88 (393)
Q Consensus 40 tL~~g~~~i--pga~eal~~L~~~G~--~v~~~TN~~~~~~~~~~~l~~lG~~ 88 (393)
+-+.|.+|+ ++..+.++++++.+. .+.+.||.... ...++.|.+.|++
T Consensus 65 I~~tGGEPllr~dl~~li~~i~~~~~l~~i~itTNG~ll-~~~~~~L~~aGl~ 116 (329)
T PRK13361 65 IRLTGGEPLVRRGCDQLVARLGKLPGLEELSLTTNGSRL-ARFAAELADAGLK 116 (329)
T ss_pred EEEECcCCCccccHHHHHHHHHhCCCCceEEEEeChhHH-HHHHHHHHHcCCC
Confidence 333455555 788899999998764 68888986543 3567788888874
No 340
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=67.14 E-value=17 Score=28.63 Aligned_cols=57 Identities=19% Similarity=0.205 Sum_probs=44.0
Q ss_pred CCcEEEEeccccccCCCcCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCC
Q 016204 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP 89 (393)
Q Consensus 29 ~~k~i~~DlDGtL~~g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~ 89 (393)
..+.+++|+-|+=+-+..-+.--.+..++++++|++++++- . ..+..+.|...|+..
T Consensus 40 ~~~~vvlDls~v~~iDssg~~~l~~~~~~~~~~g~~l~l~g--~--~~~v~~~l~~~gl~~ 96 (109)
T cd07041 40 RARGVIIDLTGVPVIDSAVARHLLRLARALRLLGARTILTG--I--RPEVAQTLVELGIDL 96 (109)
T ss_pred CCCEEEEECCCCchhcHHHHHHHHHHHHHHHHcCCeEEEEe--C--CHHHHHHHHHhCCCh
Confidence 57899999999988777666667778888999999988886 1 245566677778754
No 341
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=66.59 E-value=3.4 Score=36.23 Aligned_cols=15 Identities=27% Similarity=0.401 Sum_probs=13.5
Q ss_pred cccEEEEecCCcccc
Q 016204 232 MTDLILFDLKNFNLV 246 (393)
Q Consensus 232 M~k~iiFD~DGTL~d 246 (393)
|++.++||+|+|+++
T Consensus 1 ~~~~~~~~~~~~~~~ 15 (174)
T TIGR01685 1 LPRVIVFDLDGTLWD 15 (174)
T ss_pred CCcEEEEeCCCCCcC
Confidence 468899999999998
No 342
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=66.52 E-value=14 Score=35.76 Aligned_cols=59 Identities=12% Similarity=0.236 Sum_probs=42.2
Q ss_pred CCcEEEEecc-----c--cccCCCcCCccHHHHHHHHHHCCCeEEEEcCCCCCc-hHHHHHHHhCCC
Q 016204 29 RFKAWLLDQF-----G--VLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRA-STTIDKLKSLGF 87 (393)
Q Consensus 29 ~~k~i~~DlD-----G--tL~~g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~-~~~~~~l~~lG~ 87 (393)
..+.+.+|+| | .+.-..+.+|...+.+++|+++|+++++..+..-.. ....+.+.+.|+
T Consensus 39 P~d~i~lD~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g~ 105 (319)
T cd06591 39 PLDVIVQDWFYWPKQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKGY 105 (319)
T ss_pred CccEEEEechhhcCCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCCE
Confidence 5789999986 3 443355678999999999999999999887654322 334444555554
No 343
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=65.96 E-value=3.4 Score=38.35 Aligned_cols=46 Identities=15% Similarity=0.153 Sum_probs=39.9
Q ss_pred ccCCCcHHHHHHHHHHhCCC--CCcEEEEecCchhhHHHHHHcCCeEEE
Q 016204 303 WMGKPDKIIYKSAMAMVGVD--ACDSIAVGDSLHHDIKGANAAGIQSVF 349 (393)
Q Consensus 303 ~~gKP~p~~~~~~~~~lgi~--~~~~v~VGDsl~~Di~~a~~aG~~~i~ 349 (393)
..+-.+...++.+++++|++ ++++++|||+ .||++|.+.+|...+.
T Consensus 172 ~~~~~Kg~ai~~l~~~~~i~~~~~~~~a~GD~-~ND~~Ml~~ag~~vam 219 (256)
T TIGR01486 172 GAGSDKGKAANALKQFYNQPGGAIKVVGLGDS-PNDLPLLEVVDLAVVV 219 (256)
T ss_pred cCCCCHHHHHHHHHHHHhhcCCCceEEEEcCC-HhhHHHHHHCCEEEEe
Confidence 34556678999999999999 9999999999 7999999999976544
No 344
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=65.25 E-value=31 Score=33.38 Aligned_cols=50 Identities=20% Similarity=0.283 Sum_probs=34.6
Q ss_pred cccccCCCcCC--ccHHHHHHHHHH-CCC-eEEEEcCCCCCchHHHHHHHhCCCC
Q 016204 38 FGVLHDGKKPY--PGAISTLEMLAT-TGA-KMVVISNSSRRASTTIDKLKSLGFD 88 (393)
Q Consensus 38 DGtL~~g~~~i--pga~eal~~L~~-~G~-~v~~~TN~~~~~~~~~~~l~~lG~~ 88 (393)
..+-+.|.+++ ++..+.++++++ .|+ .+.+.||.... .+.++.|.+.|+.
T Consensus 61 ~~V~ltGGEPll~~~l~~li~~i~~~~gi~~v~itTNG~ll-~~~~~~L~~~gl~ 114 (334)
T TIGR02666 61 RKVRLTGGEPLLRKDLVELVARLAALPGIEDIALTTNGLLL-ARHAKDLKEAGLK 114 (334)
T ss_pred CEEEEECccccccCCHHHHHHHHHhcCCCCeEEEEeCchhH-HHHHHHHHHcCCC
Confidence 33444455554 689999999988 578 78888976533 4467778777763
No 345
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=65.10 E-value=3.1 Score=38.46 Aligned_cols=17 Identities=24% Similarity=0.225 Sum_probs=14.8
Q ss_pred EEEEecCCccccCHHHH
Q 016204 235 LILFDLKNFNLVSVDII 251 (393)
Q Consensus 235 ~iiFD~DGTL~ds~~~~ 251 (393)
+|+||+|+|++||.+..
T Consensus 65 av~~DIDeTvldnsp~~ 81 (237)
T PRK11009 65 AVGFDIDDTVLFSSPGF 81 (237)
T ss_pred EEEEECcCccccCCchh
Confidence 89999999999986653
No 346
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=65.05 E-value=4.1 Score=41.92 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=16.8
Q ss_pred CcEEEEeccccccCCCcCCc
Q 016204 30 FKAWLLDQFGVLHDGKKPYP 49 (393)
Q Consensus 30 ~k~i~~DlDGtL~~g~~~ip 49 (393)
-++++||+||||++.+..+|
T Consensus 22 ~~~~~FDfDGTLt~~~s~f~ 41 (497)
T PLN02177 22 NQTVAADLDGTLLISRSAFP 41 (497)
T ss_pred ccEEEEecCCcccCCCCccH
Confidence 46899999999999776655
No 347
>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]
Probab=64.58 E-value=17 Score=33.21 Aligned_cols=70 Identities=16% Similarity=0.160 Sum_probs=53.8
Q ss_pred cCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcC-CCCCcc-cCCCCccccCChhHHH
Q 016204 304 MGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIG-GIHATE-LGLDSYGEVADLSSVQ 374 (393)
Q Consensus 304 ~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~-G~~~~~-~~~~~~~~i~~~~~l~ 374 (393)
-.|-....|..+.+.+|.++.|+++.-|- ..-..+|+.+|+.+.++.. |..... +......++.+|..|.
T Consensus 178 G~K~e~~sy~~I~~~Ig~s~~eiLfLTd~-~~Ea~aa~~aGl~a~l~~rPgna~l~dd~~~~y~~i~~F~~l~ 249 (254)
T KOG2630|consen 178 GLKVESQSYKKIGHLIGKSPREILFLTDV-PREAAAARKAGLQAGLVSRPGNAPLPDDAKVEYCVIWSFEILE 249 (254)
T ss_pred cceehhHHHHHHHHHhCCChhheEEeccC-hHHHHHHHhcccceeeeecCCCCCCCcccccceeeeccchhhh
Confidence 35666789999999999999999999999 7999999999998887754 433322 2223456777877754
No 348
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=63.80 E-value=4.3 Score=43.12 Aligned_cols=44 Identities=14% Similarity=0.118 Sum_probs=38.6
Q ss_pred CCCcHHHHHHHHHHhCCCCCcEEEE--ecCchhhHHHHHHcCCeEEE
Q 016204 305 GKPDKIIYKSAMAMVGVDACDSIAV--GDSLHHDIKGANAAGIQSVF 349 (393)
Q Consensus 305 gKP~p~~~~~~~~~lgi~~~~~v~V--GDsl~~Di~~a~~aG~~~i~ 349 (393)
+-.+...++.+++.++++.+++++| ||+ .||+.|.+.+|...+.
T Consensus 611 gvdKG~AL~~L~e~~gI~~~eViafalGDs-~NDisMLe~Ag~gVAM 656 (694)
T PRK14502 611 GNDKGKAIKILNELFRLNFGNIHTFGLGDS-ENDYSMLETVDSPILV 656 (694)
T ss_pred CCCHHHHHHHHHHHhCCCccceEEEEcCCc-HhhHHHHHhCCceEEE
Confidence 4455789999999999999999999 999 7999999999996554
No 349
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=63.70 E-value=5.6 Score=39.89 Aligned_cols=53 Identities=23% Similarity=0.316 Sum_probs=46.5
Q ss_pred cccccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcC
Q 016204 300 EVRWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIG 352 (393)
Q Consensus 300 ~~~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~ 352 (393)
......|-+...|..+++.-++++..++.+||+...|+.++++.|+.|...-+
T Consensus 151 ~e~rl~KnSg~LFk~Vlk~EnVd~~~w~H~GDN~~aD~l~pk~LgI~Tlf~~s 203 (635)
T COG5610 151 SEFRLKKNSGNLFKAVLKLENVDPKKWIHCGDNWVADYLKPKNLGISTLFYIS 203 (635)
T ss_pred ceeehhcccchHHHHHHhhcCCChhheEEecCchhhhhcCccccchhHHHHHH
Confidence 34456778888999999999999999999999999999999999999876643
No 350
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=63.01 E-value=24 Score=32.16 Aligned_cols=39 Identities=18% Similarity=0.428 Sum_probs=24.7
Q ss_pred CccHHHHHHHHHHCCC-eEEEEcCCCCCchHHHHHHHhCCCC
Q 016204 48 YPGAISTLEMLATTGA-KMVVISNSSRRASTTIDKLKSLGFD 88 (393)
Q Consensus 48 ipga~eal~~L~~~G~-~v~~~TN~~~~~~~~~~~l~~lG~~ 88 (393)
.||.+++|+.+++.|. -++++|.+- +--+-+.|+.+|+.
T Consensus 86 ~Pgmv~lik~~ak~g~~eliIVSDaN--sfFIe~~Lea~~~~ 125 (256)
T KOG3120|consen 86 VPGMVRLIKSAAKLGCFELIIVSDAN--SFFIEEILEAAGIH 125 (256)
T ss_pred CccHHHHHHHHHhCCCceEEEEecCc--hhHHHHHHHHccHH
Confidence 4888888888888886 778888522 22223334445553
No 351
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=62.86 E-value=5.1 Score=36.62 Aligned_cols=50 Identities=12% Similarity=0.064 Sum_probs=42.3
Q ss_pred cccccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEc
Q 016204 300 EVRWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFII 351 (393)
Q Consensus 300 ~~~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~ 351 (393)
+....+++++..++.+++++|++++++++|||+ .||++|++.+|... .+.
T Consensus 152 ei~~~~~~K~~al~~l~~~~g~~~~~~i~~GD~-~nD~~ml~~~~~~i-av~ 201 (236)
T TIGR02471 152 DVLPLRASKGLALRYLSYRWGLPLEQILVAGDS-GNDEEMLRGLTLGV-VVG 201 (236)
T ss_pred EEeeCCCChHHHHHHHHHHhCCCHHHEEEEcCC-ccHHHHHcCCCcEE-EEc
Confidence 345567788999999999999999999999999 79999999987544 444
No 352
>PRK08238 hypothetical protein; Validated
Probab=61.98 E-value=8.4 Score=39.52 Aligned_cols=22 Identities=14% Similarity=-0.052 Sum_probs=18.2
Q ss_pred cEEEEecCCccccCHHHHHHHH
Q 016204 234 DLILFDLKNFNLVSVDIIYSSH 255 (393)
Q Consensus 234 k~iiFD~DGTL~ds~~~~~~~~ 255 (393)
+.++||+||||+.|...+...+
T Consensus 11 ~pl~~DlDgTLi~td~l~e~~~ 32 (479)
T PRK08238 11 LPLVVDLDGTLIRTDLLHESIF 32 (479)
T ss_pred CCEEEeCCCCccccchHHHHHH
Confidence 4689999999999877766666
No 353
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=61.88 E-value=19 Score=27.95 Aligned_cols=56 Identities=13% Similarity=0.098 Sum_probs=44.3
Q ss_pred CCcEEEEeccccccCCCcCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCC
Q 016204 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (393)
Q Consensus 29 ~~k~i~~DlDGtL~~g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~ 88 (393)
..+.+++|+-|+=+-+..-+---.++.++++++|.++.++. . ..+..+.|+..|+.
T Consensus 38 ~~~~vilDls~v~~iDssgl~~L~~l~~~~~~~g~~l~l~~--~--~~~v~~~l~~~gl~ 93 (100)
T cd06844 38 AGKTIVIDISALEFMDSSGTGVLLERSRLAEAVGGQFVLTG--I--SPAVRITLTESGLD 93 (100)
T ss_pred CCCEEEEECCCCcEEcHHHHHHHHHHHHHHHHcCCEEEEEC--C--CHHHHHHHHHhCch
Confidence 47899999999988887777778888999999999988886 2 24555666667764
No 354
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=61.38 E-value=19 Score=34.49 Aligned_cols=59 Identities=12% Similarity=0.169 Sum_probs=42.8
Q ss_pred CCcEEEEecc-----ccccCCCcCCccHHHHHHHHHHCCCeEEEEcCCCCCc-hHHHHHHHhCCC
Q 016204 29 RFKAWLLDQF-----GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRA-STTIDKLKSLGF 87 (393)
Q Consensus 29 ~~k~i~~DlD-----GtL~~g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~-~~~~~~l~~lG~ 87 (393)
.++.|.+|.+ |...-..+.+|+-++.+++|+++|.++++..+..-.. ....+.+.+.|+
T Consensus 45 P~d~i~iD~~w~~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~~~g~ 109 (303)
T cd06592 45 PNGQIEIDDNWETCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDSENFREAVEKGY 109 (303)
T ss_pred CCCeEEeCCCccccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhhhCCe
Confidence 4789999975 6655566788999999999999999999988764332 233333444443
No 355
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=61.04 E-value=15 Score=32.18 Aligned_cols=49 Identities=22% Similarity=0.316 Sum_probs=35.3
Q ss_pred ccccccCCCcCC--ccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCC
Q 016204 37 QFGVLHDGKKPY--PGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGF 87 (393)
Q Consensus 37 lDGtL~~g~~~i--pga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~ 87 (393)
+.++.+.|+.+. |...+.++++++.|+.+.+.||... ....+++.+.|+
T Consensus 63 ~~~i~~sGGEPll~~~l~~li~~~~~~g~~v~i~TNg~~--~~~l~~l~~~g~ 113 (191)
T TIGR02495 63 IDGVVITGGEPTLQAGLPDFLRKVRELGFEVKLDTNGSN--PRVLEELLEEGL 113 (191)
T ss_pred CCeEEEECCcccCcHhHHHHHHHHHHCCCeEEEEeCCCC--HHHHHHHHhcCC
Confidence 345555566665 5688999999999999999998763 345555656563
No 356
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=61.01 E-value=24 Score=26.78 Aligned_cols=55 Identities=16% Similarity=0.221 Sum_probs=41.9
Q ss_pred CcEEEEeccccccCCCcCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCC
Q 016204 30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (393)
Q Consensus 30 ~k~i~~DlDGtL~~g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~ 88 (393)
.+.+++|+.++=+-+...+---.++.+.++++|+.+.+..- +..+.+.|+.+|+.
T Consensus 38 ~~~viid~~~v~~iDs~g~~~L~~l~~~~~~~g~~v~i~~~----~~~~~~~l~~~gl~ 92 (99)
T cd07043 38 PRRLVLDLSGVTFIDSSGLGVLLGAYKRARAAGGRLVLVNV----SPAVRRVLELTGLD 92 (99)
T ss_pred CCEEEEECCCCCEEcchhHHHHHHHHHHHHHcCCeEEEEcC----CHHHHHHHHHhCcc
Confidence 58999999998777777777778888899999999777651 23566666677764
No 357
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=60.15 E-value=4.9 Score=35.03 Aligned_cols=49 Identities=18% Similarity=0.395 Sum_probs=42.8
Q ss_pred cCCCcHHHHHHHHHHhCC-----CCCcEEEEecCchhhHHHHHHcCCeEEEEcCCC
Q 016204 304 MGKPDKIIYKSAMAMVGV-----DACDSIAVGDSLHHDIKGANAAGIQSVFIIGGI 354 (393)
Q Consensus 304 ~gKP~p~~~~~~~~~lgi-----~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~ 354 (393)
..|| ..+..+++.++. .|++++||||++.+|+.+|+..|+.+|+|..|.
T Consensus 114 ~kKP--~~~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~gN~~G~~tilv~~gv 167 (168)
T PF09419_consen 114 AKKP--GCFREILKYFKCQKVVTSPSEIAVIGDRLFTDVLMGNRMGSYTILVTDGV 167 (168)
T ss_pred CCCC--ccHHHHHHHHhhccCCCCchhEEEEcchHHHHHHHhhccCceEEEEecCc
Confidence 3565 678888888864 499999999999999999999999999999885
No 358
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=59.85 E-value=5.1 Score=37.60 Aligned_cols=14 Identities=21% Similarity=0.067 Sum_probs=12.1
Q ss_pred cEEEEecCCccccC
Q 016204 234 DLILFDLKNFNLVS 247 (393)
Q Consensus 234 k~iiFD~DGTL~ds 247 (393)
.+|+||+||||++.
T Consensus 15 ~li~~D~DGTLl~~ 28 (266)
T PRK10187 15 YAWFFDLDGTLAEI 28 (266)
T ss_pred EEEEEecCCCCCCC
Confidence 47899999999983
No 359
>TIGR00632 vsr DNA mismatch endonuclease Vsr. All proteins in this family for which functions are known are G:T mismatch endonucleases that function in a specialized mismatch repair process used usually to repair G:T mismatches in specific sections of the genome. This family was based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Members of this family typically are found near to a DNA cytosine methyltransferase.
Probab=59.77 E-value=12 Score=30.47 Aligned_cols=42 Identities=10% Similarity=0.180 Sum_probs=30.5
Q ss_pred CCcEEEEeccccccCCCcC----------------Ccc----HHHHHHHHHHCCCeEEEEcCC
Q 016204 29 RFKAWLLDQFGVLHDGKKP----------------YPG----AISTLEMLATTGAKMVVISNS 71 (393)
Q Consensus 29 ~~k~i~~DlDGtL~~g~~~----------------ipg----a~eal~~L~~~G~~v~~~TN~ 71 (393)
++++++| +||..|+|..- ++. -.+..+.|++.|.+|+-+.|.
T Consensus 55 ~~klaIf-VDGcfWHgh~c~~~~~pk~n~~fW~~Ki~~n~~rD~~~~~~L~~~Gw~Vlr~We~ 116 (117)
T TIGR00632 55 EYRCVIF-IHGCFWHGHHCYLGKVPKTRTDFWSPKIEKNVERDRRVNSRLQELGWRVLRVWEC 116 (117)
T ss_pred CCCEEEE-EcccccccCCcccccCCCccHHHHHHHHHHHHHHHHHHHHHHHHCcCEEEEEeCC
Confidence 6788877 99999997431 222 344777888899998888764
No 360
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=59.66 E-value=24 Score=35.85 Aligned_cols=42 Identities=5% Similarity=-0.073 Sum_probs=35.8
Q ss_pred ccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCC
Q 016204 303 WMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGI 345 (393)
Q Consensus 303 ~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~ 345 (393)
...-|+.+.++.+++++|+..+..+++.|+ +...+--++.+=
T Consensus 307 iNW~~K~eNirkIAkklNlg~dSmvFiDD~-p~ErE~vk~~~~ 348 (574)
T COG3882 307 INWDPKAENIRKIAKKLNLGLDSMVFIDDN-PAERELVKRELP 348 (574)
T ss_pred ecCCcchhhHHHHHHHhCCCccceEEecCC-HHHHHHHHhcCc
Confidence 456788999999999999999999999999 587777776663
No 361
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=58.68 E-value=20 Score=40.70 Aligned_cols=48 Identities=15% Similarity=0.223 Sum_probs=34.6
Q ss_pred ccccCCCcCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCC
Q 016204 39 GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (393)
Q Consensus 39 GtL~~g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~ 88 (393)
|-+.-.+.+-|+++++|++|++.|++++++|+. .........+++|+-
T Consensus 649 Gli~~~d~lr~~~~~~I~~l~~agi~v~miTGD--~~~TA~~iA~~~gii 696 (1054)
T TIGR01657 649 GFIVFENPLKPDTKEVIKELKRASIRTVMITGD--NPLTAVHVARECGIV 696 (1054)
T ss_pred EEEEEecCCCccHHHHHHHHHHCCCeEEEECCC--CHHHHHHHHHHcCCC
Confidence 434445567799999999999999999999953 333333344567874
No 362
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=58.57 E-value=24 Score=32.45 Aligned_cols=12 Identities=33% Similarity=0.348 Sum_probs=10.5
Q ss_pred EEEEecCCcccc
Q 016204 235 LILFDLKNFNLV 246 (393)
Q Consensus 235 ~iiFD~DGTL~d 246 (393)
.|+.||||||++
T Consensus 3 li~tDlDGTLl~ 14 (249)
T TIGR01485 3 LLVSDLDNTLVD 14 (249)
T ss_pred EEEEcCCCcCcC
Confidence 577899999996
No 363
>PRK15452 putative protease; Provisional
Probab=57.69 E-value=1.3e+02 Score=30.70 Aligned_cols=57 Identities=12% Similarity=0.048 Sum_probs=40.8
Q ss_pred ccHHHHHHHHHHCCCeEEEEcCCCCCch---HH---HHHHHhCCCCCcccceEEeCchhHHHHHHccc
Q 016204 49 PGAISTLEMLATTGAKMVVISNSSRRAS---TT---IDKLKSLGFDPSLFAGAITSGELTHQYLLRRD 110 (393)
Q Consensus 49 pga~eal~~L~~~G~~v~~~TN~~~~~~---~~---~~~l~~lG~~~~~~~~iits~~~~~~~l~~~~ 110 (393)
+.-.++++..+++|+++++.+|.-.... .+ .+.+.++|+ +.|+-+......++++..
T Consensus 46 edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~l~~~gv-----DgvIV~d~G~l~~~ke~~ 108 (443)
T PRK15452 46 ENLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLEPVIAMKP-----DALIMSDPGLIMMVREHF 108 (443)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHHHHHhCCC-----CEEEEcCHHHHHHHHHhC
Confidence 5588899999999999999998543222 22 344445555 778888888888887653
No 364
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=57.26 E-value=27 Score=33.71 Aligned_cols=59 Identities=25% Similarity=0.349 Sum_probs=43.4
Q ss_pred CCcEEEEecc-----------ccccCCCcCCccHHHHHHHHHHCCCeEEEEcCCCCCc-hHHHHHHHhCCC
Q 016204 29 RFKAWLLDQF-----------GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRA-STTIDKLKSLGF 87 (393)
Q Consensus 29 ~~k~i~~DlD-----------GtL~~g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~-~~~~~~l~~lG~ 87 (393)
..+.|.+|+| |...=..+.+|.-.+.+++|+++|+++++..+..-.. ....+.+.+.|+
T Consensus 39 P~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~~~g~ 109 (317)
T cd06598 39 PLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAVKAGA 109 (317)
T ss_pred CceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHHhCCC
Confidence 5789999975 2343356788999999999999999999999865332 244455656665
No 365
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=56.91 E-value=44 Score=32.26 Aligned_cols=54 Identities=15% Similarity=0.179 Sum_probs=35.1
Q ss_pred HHHHhhhcCCcEEEEe-ccccccCCC--c--CC--ccHHHHHHHH----HHCCCeEEEEcCCCCCc
Q 016204 21 LRHIAETRRFKAWLLD-QFGVLHDGK--K--PY--PGAISTLEML----ATTGAKMVVISNSSRRA 75 (393)
Q Consensus 21 ~~~~~~~~~~k~i~~D-lDGtL~~g~--~--~i--pga~eal~~L----~~~G~~v~~~TN~~~~~ 75 (393)
++.+.+ +.|++|++| +|+--+... . +. .+-.++++.| |+++..+.|+.||+...
T Consensus 153 l~~l~~-kGfDGvfLD~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P~~~II~NnG~ei 217 (315)
T TIGR01370 153 LDRVIA-QGFDGVYLDLIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQNPQFVIIPQNGEEL 217 (315)
T ss_pred HHHHHH-cCCCeEeeccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHCCCEEEEecCchhh
Confidence 444444 379999999 688654211 1 11 2334556555 89999999999998643
No 366
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=56.36 E-value=30 Score=26.93 Aligned_cols=56 Identities=13% Similarity=0.109 Sum_probs=41.4
Q ss_pred CCcEEEEeccccccCCCcCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCC
Q 016204 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (393)
Q Consensus 29 ~~k~i~~DlDGtL~~g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~ 88 (393)
..+.+++|+.++=.-+...+---.++.++++++|.++.++.- .....+.|...|+.
T Consensus 42 ~~~~vvidls~v~~iDssgl~~L~~~~~~~~~~~~~~~l~~~----~~~~~~~l~~~~l~ 97 (108)
T TIGR00377 42 GPRPIVLDLEDLEFMDSSGLGVLLGRYKQVRRVGGQLVLVSV----SPRVARLLDITGLL 97 (108)
T ss_pred CCCeEEEECCCCeEEccccHHHHHHHHHHHHhcCCEEEEEeC----CHHHHHHHHHhChh
Confidence 578999999999777776666677888888999998877762 23445555556664
No 367
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=56.16 E-value=32 Score=31.80 Aligned_cols=70 Identities=16% Similarity=0.256 Sum_probs=52.0
Q ss_pred hhccHHHHhhhcCCcEEEEeccccccCCCcCCcc------HHHHHHHHHHCCCeEEEEcCCC-C--Cc---hHHHHHHHh
Q 016204 17 TLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPG------AISTLEMLATTGAKMVVISNSS-R--RA---STTIDKLKS 84 (393)
Q Consensus 17 ~~~~~~~~~~~~~~k~i~~DlDGtL~~g~~~ipg------a~eal~~L~~~G~~v~~~TN~~-~--~~---~~~~~~l~~ 84 (393)
....+++++. +-|..+..+++++.+.....++ -.+.++.|+..|..++-+.||- . .. ....+.|++
T Consensus 26 ~~~~v~~~l~--~aD~~~~NlE~~v~~~~~~~~~~~~f~~~~~~~~~L~~~G~d~vslANNH~~D~G~~gl~~Tl~~L~~ 103 (250)
T PF09587_consen 26 IFEDVKPLLQ--SADLVVANLETPVTDSGQPASGYPHFNAPPEILDALKDAGFDVVSLANNHIFDYGEEGLLDTLEALDK 103 (250)
T ss_pred HHHHHHHHHh--hCCEEEEEeeecCcCCCCcCCCcceecCCHHHHHHHHHcCCCEEEecCCCCccccHHHHHHHHHHHHH
Confidence 4466777777 8899999999999876654443 6788999999999999888873 1 22 345566777
Q ss_pred CCCC
Q 016204 85 LGFD 88 (393)
Q Consensus 85 lG~~ 88 (393)
.|+.
T Consensus 104 ~gi~ 107 (250)
T PF09587_consen 104 AGIP 107 (250)
T ss_pred CCCc
Confidence 7764
No 368
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=55.61 E-value=6.6 Score=34.17 Aligned_cols=13 Identities=15% Similarity=0.151 Sum_probs=11.8
Q ss_pred cEEEEecCCcccc
Q 016204 234 DLILFDLKNFNLV 246 (393)
Q Consensus 234 k~iiFD~DGTL~d 246 (393)
|+++||.||||+.
T Consensus 2 ~~~~~D~Dgtl~~ 14 (176)
T TIGR00213 2 KAIFLDRDGTINI 14 (176)
T ss_pred CEEEEeCCCCEeC
Confidence 6899999999995
No 369
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=55.49 E-value=41 Score=32.56 Aligned_cols=33 Identities=24% Similarity=0.464 Sum_probs=26.5
Q ss_pred CccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHH
Q 016204 48 YPGAISTLEMLATTGAKMVVISNSSRRASTTIDKL 82 (393)
Q Consensus 48 ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l 82 (393)
.|...+.++.++++|+.+.+.||.+. .+.++.|
T Consensus 144 ~p~l~eli~~~k~~Gi~~~L~TNG~~--~e~l~~L 176 (322)
T PRK13762 144 YPYLPELIEEFHKRGFTTFLVTNGTR--PDVLEKL 176 (322)
T ss_pred hhhHHHHHHHHHHcCCCEEEECCCCC--HHHHHHH
Confidence 37899999999999999999999864 2344545
No 370
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=54.83 E-value=14 Score=33.61 Aligned_cols=43 Identities=21% Similarity=0.145 Sum_probs=34.4
Q ss_pred eccccccCCCcCC--cc-HHHHHHHHHHCCCeEEEEcCCCCCchHH
Q 016204 36 DQFGVLHDGKKPY--PG-AISTLEMLATTGAKMVVISNSSRRASTT 78 (393)
Q Consensus 36 DlDGtL~~g~~~i--pg-a~eal~~L~~~G~~v~~~TN~~~~~~~~ 78 (393)
.-.||-+.|+++. ++ +.+++++++++|+++++-||...+.+.+
T Consensus 38 sggGVt~SGGEPllq~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~ 83 (213)
T PRK10076 38 SGGGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETAGDAPASKL 83 (213)
T ss_pred CCCEEEEeCchHHcCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHH
Confidence 3479999998886 44 6899999999999999999976554333
No 371
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=53.71 E-value=21 Score=36.66 Aligned_cols=56 Identities=14% Similarity=0.262 Sum_probs=39.6
Q ss_pred CCcEEEEec----cccccCCCcCCccHHHHHHHHHHCCCeEEEEcCCCCCc-hHHHHHHHhCCC
Q 016204 29 RFKAWLLDQ----FGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRA-STTIDKLKSLGF 87 (393)
Q Consensus 29 ~~k~i~~Dl----DGtL~~g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~-~~~~~~l~~lG~ 87 (393)
.++.+.+=. =|.+.-.+.+-|++.+++++|++.|++++++|+....+ ..+.+ .+|+
T Consensus 326 g~~~~~~a~~~~~~g~i~l~d~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~a~~ia~---~lgi 386 (499)
T TIGR01494 326 GLRVLAVASKETLLGLLGLEDPLRDDAKETISELREAGIRVIMLTGDNVLTAKAIAK---ELGI 386 (499)
T ss_pred CCEEEEEEECCeEEEEEEecCCCchhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHH---HcCc
Confidence 345555533 35566688899999999999999999999999654443 34443 3465
No 372
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=52.97 E-value=12 Score=36.27 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=22.5
Q ss_pred ccHHHHHHHHHHCCCeEEEEcCCCCC
Q 016204 49 PGAISTLEMLATTGAKMVVISNSSRR 74 (393)
Q Consensus 49 pga~eal~~L~~~G~~v~~~TN~~~~ 74 (393)
|....++++|+++||+++++||++.+
T Consensus 243 ~ql~~fl~kL~~~GKklFLiTNSPys 268 (510)
T KOG2470|consen 243 PQLLAFLRKLKDHGKKLFLITNSPYS 268 (510)
T ss_pred HHHHHHHHHHHHhcCcEEEEeCCchh
Confidence 45678999999999999999998754
No 373
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=51.35 E-value=9.4 Score=32.91 Aligned_cols=14 Identities=7% Similarity=0.202 Sum_probs=12.7
Q ss_pred cEEEEecCCccccC
Q 016204 234 DLILFDLKNFNLVS 247 (393)
Q Consensus 234 k~iiFD~DGTL~ds 247 (393)
|+++||.||||+++
T Consensus 2 ~~~~~d~dg~l~~~ 15 (161)
T TIGR01261 2 KILFIDRDGTLIEE 15 (161)
T ss_pred CEEEEeCCCCcccc
Confidence 68999999999994
No 374
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=50.65 E-value=40 Score=31.44 Aligned_cols=52 Identities=13% Similarity=0.150 Sum_probs=41.9
Q ss_pred CCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHH----HHHHcCCeEEEEcCCCCCc
Q 016204 305 GKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIK----GANAAGIQSVFIIGGIHAT 357 (393)
Q Consensus 305 gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~----~a~~aG~~~i~v~~G~~~~ 357 (393)
+-++..++..++.+.|..|+.+|+|.|+ ...++ +++..|+..+++.+.....
T Consensus 160 ~~~KG~~L~~fL~~~~~~pk~IIfIDD~-~~nl~sv~~a~k~~~I~f~G~~Yt~~~~ 215 (252)
T PF11019_consen 160 GQDKGEVLKYFLDKINQSPKKIIFIDDN-KENLKSVEKACKKSGIDFIGFHYTGAEE 215 (252)
T ss_pred CCccHHHHHHHHHHcCCCCCeEEEEeCC-HHHHHHHHHHHhhCCCcEEEEEEcchhh
Confidence 3445789999999999999999999999 67775 4566799999998764433
No 375
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=50.41 E-value=18 Score=29.13 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=22.9
Q ss_pred CccHHHHHHHHHHCCCeEEEEcCCCCC
Q 016204 48 YPGAISTLEMLATTGAKMVVISNSSRR 74 (393)
Q Consensus 48 ipga~eal~~L~~~G~~v~~~TN~~~~ 74 (393)
-+...++++.++++|.+++.+||+...
T Consensus 59 t~e~~~~~~~a~~~g~~vi~iT~~~~s 85 (126)
T cd05008 59 TADTLAALRLAKEKGAKTVAITNVVGS 85 (126)
T ss_pred CHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 356899999999999999999987543
No 376
>PRK06769 hypothetical protein; Validated
Probab=50.12 E-value=9.5 Score=33.19 Aligned_cols=13 Identities=15% Similarity=0.005 Sum_probs=12.0
Q ss_pred ccEEEEecCCccc
Q 016204 233 TDLILFDLKNFNL 245 (393)
Q Consensus 233 ~k~iiFD~DGTL~ 245 (393)
+|+++||.||||.
T Consensus 4 ~~~~~~d~d~~~~ 16 (173)
T PRK06769 4 IQAIFIDRDGTIG 16 (173)
T ss_pred CcEEEEeCCCccc
Confidence 6899999999994
No 377
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=50.12 E-value=22 Score=38.50 Aligned_cols=14 Identities=21% Similarity=0.304 Sum_probs=12.9
Q ss_pred ccEEEEecCCcccc
Q 016204 233 TDLILFDLKNFNLV 246 (393)
Q Consensus 233 ~k~iiFD~DGTL~d 246 (393)
.+.++||+||||++
T Consensus 492 ~rLi~~D~DGTL~~ 505 (726)
T PRK14501 492 RRLLLLDYDGTLVP 505 (726)
T ss_pred ceEEEEecCccccC
Confidence 58999999999997
No 378
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=50.10 E-value=20 Score=29.02 Aligned_cols=28 Identities=18% Similarity=0.288 Sum_probs=23.1
Q ss_pred CCccHHHHHHHHHHCCCeEEEEcCCCCC
Q 016204 47 PYPGAISTLEMLATTGAKMVVISNSSRR 74 (393)
Q Consensus 47 ~ipga~eal~~L~~~G~~v~~~TN~~~~ 74 (393)
--+...++++.+|++|.+++.+|++...
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~~~s 86 (128)
T cd05014 59 ETDELLNLLPHLKRRGAPIIAITGNPNS 86 (128)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 3467899999999999999999986543
No 379
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=50.09 E-value=21 Score=39.44 Aligned_cols=16 Identities=25% Similarity=0.243 Sum_probs=14.3
Q ss_pred hcccEEEEecCCcccc
Q 016204 231 RMTDLILFDLKNFNLV 246 (393)
Q Consensus 231 ~M~k~iiFD~DGTL~d 246 (393)
.+.++|++|+||||++
T Consensus 594 ~~~rlI~LDyDGTLlp 609 (854)
T PLN02205 594 TTTRAILLDYDGTLMP 609 (854)
T ss_pred hcCeEEEEecCCcccC
Confidence 4689999999999997
No 380
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=49.94 E-value=50 Score=25.43 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=21.8
Q ss_pred HCCCeEEEEcCCCCCchHHHHHHHhCCCC
Q 016204 60 TTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (393)
Q Consensus 60 ~~G~~v~~~TN~~~~~~~~~~~l~~lG~~ 88 (393)
..+.++++.-+++.++...+..|..+|+.
T Consensus 59 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~ 87 (101)
T cd01518 59 LKGKKVLMYCTGGIRCEKASAYLKERGFK 87 (101)
T ss_pred cCCCEEEEECCCchhHHHHHHHHHHhCCc
Confidence 36678888887776666667788889984
No 381
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=49.53 E-value=25 Score=33.44 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=35.4
Q ss_pred CCcEEEEeccc--------------cccCCCcCCccHHHHHHHHHHCCCeEEEEcCCC
Q 016204 29 RFKAWLLDQFG--------------VLHDGKKPYPGAISTLEMLATTGAKMVVISNSS 72 (393)
Q Consensus 29 ~~k~i~~DlDG--------------tL~~g~~~ipga~eal~~L~~~G~~v~~~TN~~ 72 (393)
..++|.+|+|= ...=..+.+|...+.+++|+++|.++++..+..
T Consensus 40 P~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~ 97 (292)
T cd06595 40 PLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPA 97 (292)
T ss_pred CccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCC
Confidence 57999999871 222245678999999999999999999988754
No 382
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=49.40 E-value=8.1 Score=35.46 Aligned_cols=18 Identities=17% Similarity=0.300 Sum_probs=15.0
Q ss_pred ccEEEEecCCccccCHHH
Q 016204 233 TDLILFDLKNFNLVSVDI 250 (393)
Q Consensus 233 ~k~iiFD~DGTL~ds~~~ 250 (393)
..+|+||+|+|++++...
T Consensus 72 ~~avv~DIDeTvLsn~~y 89 (229)
T PF03767_consen 72 PPAVVFDIDETVLSNSPY 89 (229)
T ss_dssp EEEEEEESBTTTEEHHHH
T ss_pred CcEEEEECCcccccCHHH
Confidence 468999999999987554
No 383
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=49.30 E-value=41 Score=26.96 Aligned_cols=29 Identities=14% Similarity=0.311 Sum_probs=22.4
Q ss_pred HCCCeEEEEcCCCCCchHHHHHHHhCCCC
Q 016204 60 TTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (393)
Q Consensus 60 ~~G~~v~~~TN~~~~~~~~~~~l~~lG~~ 88 (393)
...++++++.+++.++......|+.+|+.
T Consensus 62 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~ 90 (117)
T cd01522 62 GKDRPVLLLCRSGNRSIAAAEAAAQAGFT 90 (117)
T ss_pred CCCCeEEEEcCCCccHHHHHHHHHHCCCC
Confidence 35788888887776666778888899984
No 384
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=47.23 E-value=48 Score=33.18 Aligned_cols=79 Identities=18% Similarity=0.255 Sum_probs=50.8
Q ss_pred ccccCCCchhhhhccHHHHhhhcCCcEEEEecccc--ccC-------CCcCCccHHHHHHHHHHCCCeEEEEc---C-CC
Q 016204 6 SVQSNDPHLFQTLNGLRHIAETRRFKAWLLDQFGV--LHD-------GKKPYPGAISTLEMLATTGAKMVVIS---N-SS 72 (393)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~DlDGt--L~~-------g~~~ipga~eal~~L~~~G~~v~~~T---N-~~ 72 (393)
+.|||...+-. +-.+.+.+ ..+ .|-+-+||. +++ |...+..+.++|+.|++.|+++-+.| . |.
T Consensus 105 ~i~TNG~ll~~--e~~~~l~~-~~~-~v~ISlDG~~~~hD~~R~~~~g~gsf~~v~~~i~~l~~~gi~~~i~~vv~~~n~ 180 (412)
T PRK13745 105 CIQTNGTLLTD--EWCEFFRE-NNF-LVGVSIDGPQEFHDEYRKNKMGKPSFVKVMKGINLLKKHGVEWNAMAVVNDFNA 180 (412)
T ss_pred EEeecCEeCCH--HHHHHHHH-cCe-EEEEEecCCHHHhhhhcCCCCCCccHHHHHHHHHHHHHcCCCEEEEEEEcCCcc
Confidence 46777765532 22333333 133 677889998 333 33456678999999999999875543 3 22
Q ss_pred CCchHHHHHHHhCCCC
Q 016204 73 RRASTTIDKLKSLGFD 88 (393)
Q Consensus 73 ~~~~~~~~~l~~lG~~ 88 (393)
....++.+.+.++|+.
T Consensus 181 ~~~~e~~~~~~~lg~~ 196 (412)
T PRK13745 181 DYPLDFYHFFKELDCH 196 (412)
T ss_pred ccHHHHHHHHHHcCCC
Confidence 3345778888889986
No 385
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=47.21 E-value=15 Score=34.61 Aligned_cols=19 Identities=21% Similarity=0.380 Sum_probs=15.8
Q ss_pred cEEEEecCCccccCHHHHH
Q 016204 234 DLILFDLKNFNLVSVDIIY 252 (393)
Q Consensus 234 k~iiFD~DGTL~ds~~~~~ 252 (393)
.++|||+|+|++++.+.+.
T Consensus 102 dA~V~DIDET~LsN~pY~~ 120 (275)
T TIGR01680 102 DTFLFNIDGTALSNIPYYK 120 (275)
T ss_pred CEEEEECccccccCHHHHH
Confidence 6899999999999877443
No 386
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=46.89 E-value=20 Score=30.41 Aligned_cols=51 Identities=18% Similarity=0.172 Sum_probs=36.3
Q ss_pred hhhccHHHHhhhcCCcEEEEeccccccCCCcCC-ccHHHHHHHHHHCCCeEEEEcCC
Q 016204 16 QTLNGLRHIAETRRFKAWLLDQFGVLHDGKKPY-PGAISTLEMLATTGAKMVVISNS 71 (393)
Q Consensus 16 ~~~~~~~~~~~~~~~k~i~~DlDGtL~~g~~~i-pga~eal~~L~~~G~~v~~~TN~ 71 (393)
.+.+.+.+.++ ++.. .+.|+...|.+.. +...+.+++++++|+++.+-||.
T Consensus 46 lt~eel~~~I~--~~~~---~~~gVt~SGGEl~~~~l~~ll~~lk~~Gl~i~l~Tg~ 97 (147)
T TIGR02826 46 LTPEYLTKTLD--KYRS---LISCVLFLGGEWNREALLSLLKIFKEKGLKTCLYTGL 97 (147)
T ss_pred CCHHHHHHHHH--HhCC---CCCEEEEechhcCHHHHHHHHHHHHHCCCCEEEECCC
Confidence 44555555554 3331 2579988888744 45889999999999999999973
No 387
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=46.79 E-value=11 Score=32.68 Aligned_cols=14 Identities=21% Similarity=0.268 Sum_probs=13.0
Q ss_pred ccEEEEecCCcccc
Q 016204 233 TDLILFDLKNFNLV 246 (393)
Q Consensus 233 ~k~iiFD~DGTL~d 246 (393)
+|++++|+|+||+-
T Consensus 28 ikgvi~DlDNTLv~ 41 (175)
T COG2179 28 IKGVILDLDNTLVP 41 (175)
T ss_pred CcEEEEeccCceec
Confidence 79999999999985
No 388
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=46.52 E-value=11 Score=32.40 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=18.3
Q ss_pred EEEEecCchhhHHHHHHcCCeE
Q 016204 326 SIAVGDSLHHDIKGANAAGIQS 347 (393)
Q Consensus 326 ~v~VGDsl~~Di~~a~~aG~~~ 347 (393)
...+|.+ .+|+.+=+++|+..
T Consensus 122 ~agfGN~-~tDv~aY~~vGip~ 142 (157)
T PF08235_consen 122 YAGFGNR-STDVIAYKAVGIPK 142 (157)
T ss_pred EEecCCc-HHHHHHHHHcCCCh
Confidence 5679999 79999999999863
No 389
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=46.47 E-value=12 Score=38.92 Aligned_cols=47 Identities=19% Similarity=0.197 Sum_probs=39.9
Q ss_pred cccccccCCCcHHHHHHHHHHhC----CCCCcEEEEecCchhhHHHHHHcCC
Q 016204 298 GGEVRWMGKPDKIIYKSAMAMVG----VDACDSIAVGDSLHHDIKGANAAGI 345 (393)
Q Consensus 298 ~~~~~~~gKP~p~~~~~~~~~lg----i~~~~~v~VGDsl~~Di~~a~~aG~ 345 (393)
+.+.....||+|.++..++++++ +++++++||||+ ..|+++|+++|-
T Consensus 255 a~~~~~~RKP~pGm~~~a~~~~~~~~~Id~~~S~~VGDa-agr~~~g~~ag~ 305 (526)
T TIGR01663 255 AIGAGFYRKPLTGMWDHLKEEANDGTEIQEDDCFFVGDA-AGRPANGKAAGK 305 (526)
T ss_pred eCCCCCCCCCCHHHHHHHHHhcCcccCCCHHHeEEeCCc-ccchHHHHhcCC
Confidence 34455678999999999999985 899999999999 788888777765
No 390
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=46.40 E-value=11 Score=36.34 Aligned_cols=15 Identities=20% Similarity=0.264 Sum_probs=13.7
Q ss_pred ccEEEEecCCccccC
Q 016204 233 TDLILFDLKNFNLVS 247 (393)
Q Consensus 233 ~k~iiFD~DGTL~ds 247 (393)
+|+|+||+|+||+..
T Consensus 3 ~k~~v~DlDnTlw~g 17 (320)
T TIGR01686 3 LKVLVLDLDNTLWGG 17 (320)
T ss_pred eEEEEEcCCCCCCCC
Confidence 589999999999876
No 391
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=45.89 E-value=19 Score=32.67 Aligned_cols=55 Identities=22% Similarity=0.310 Sum_probs=41.5
Q ss_pred ccHHHHhhhcCCcEEEEeccccccCCCcCC--ccHHHHHHHHHHCCCeEEEEcCCCCCc
Q 016204 19 NGLRHIAETRRFKAWLLDQFGVLHDGKKPY--PGAISTLEMLATTGAKMVVISNSSRRA 75 (393)
Q Consensus 19 ~~~~~~~~~~~~k~i~~DlDGtL~~g~~~i--pga~eal~~L~~~G~~v~~~TN~~~~~ 75 (393)
.+.++|++ .++..-...-||.+.|.+|. +...+.++.|+++|+++.+=||.+-..
T Consensus 56 ~~~~~I~~--~i~~~~~~~~~V~lTGGEP~~~~~l~~Ll~~l~~~g~~~~lETngti~~ 112 (212)
T COG0602 56 MSADEILA--DIKSLGYKARGVSLTGGEPLLQPNLLELLELLKRLGFRIALETNGTIPV 112 (212)
T ss_pred cCHHHHHH--HHHhcCCCcceEEEeCCcCCCcccHHHHHHHHHhCCceEEecCCCCccc
Confidence 34556666 55554444558888888884 589999999999999999999987544
No 392
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=45.85 E-value=18 Score=33.01 Aligned_cols=10 Identities=10% Similarity=0.049 Sum_probs=7.3
Q ss_pred EEecCCcccc
Q 016204 237 LFDLKNFNLV 246 (393)
Q Consensus 237 iFD~DGTL~d 246 (393)
+||+||||..
T Consensus 1 ~lDyDGTL~p 10 (235)
T PF02358_consen 1 FLDYDGTLAP 10 (235)
T ss_dssp EEE-TTTSS-
T ss_pred CcccCCccCC
Confidence 5899999997
No 393
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=45.62 E-value=12 Score=26.78 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=14.9
Q ss_pred HHHHHHHhCCCCCcEEEEecCchhhHHHHH
Q 016204 312 YKSAMAMVGVDACDSIAVGDSLHHDIKGAN 341 (393)
Q Consensus 312 ~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~ 341 (393)
...+++++|+ +|++||+ ..|+++..
T Consensus 7 VqQLLK~fG~----~IY~gdr-~~DielM~ 31 (62)
T PF06014_consen 7 VQQLLKKFGI----IIYVGDR-LWDIELME 31 (62)
T ss_dssp HHHHHHTTS---------S-H-HHHHHHHH
T ss_pred HHHHHHHCCE----EEEeCCh-HHHHHHHH
Confidence 3567888887 9999999 69999764
No 394
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=45.15 E-value=64 Score=25.83 Aligned_cols=56 Identities=16% Similarity=0.202 Sum_probs=41.9
Q ss_pred CCcEEEEeccccccCCCcCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCC
Q 016204 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (393)
Q Consensus 29 ~~k~i~~DlDGtL~~g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~ 88 (393)
+.+.+++|+-||=+-+...+---..+++.++..|.+++++..+ .++.+.+...|++
T Consensus 43 ~~~~ivIDls~v~~~dS~gl~~L~~~~~~~~~~g~~~~l~~i~----p~v~~~~~~~gl~ 98 (117)
T COG1366 43 GARGLVIDLSGVDFMDSAGLGVLVALLKSARLRGVELVLVGIQ----PEVARTLELTGLD 98 (117)
T ss_pred CCcEEEEECCCCceechHHHHHHHHHHHHHHhcCCeEEEEeCC----HHHHHHHHHhCch
Confidence 4566999999998877666655677889999999998888733 3455556667775
No 395
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=45.11 E-value=12 Score=38.49 Aligned_cols=29 Identities=17% Similarity=0.103 Sum_probs=22.2
Q ss_pred HHhCCCCCcEEEEecCchhhHHHHHHcCCeE
Q 016204 317 AMVGVDACDSIAVGDSLHHDIKGANAAGIQS 347 (393)
Q Consensus 317 ~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~ 347 (393)
+.+|.+... ++.||+ .+|..+...++-..
T Consensus 183 ~~~g~~~~~-~aYgDS-~sD~plL~~a~e~y 211 (497)
T PLN02177 183 KEFGDALPD-LGLGDR-ETDHDFMSICKEGY 211 (497)
T ss_pred HHhCCCCce-EEEECC-ccHHHHHHhCCccE
Confidence 456654444 899999 79999999988654
No 396
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=44.91 E-value=32 Score=38.24 Aligned_cols=14 Identities=7% Similarity=0.145 Sum_probs=12.1
Q ss_pred ccEEEEecCCcccc
Q 016204 233 TDLILFDLKNFNLV 246 (393)
Q Consensus 233 ~k~iiFD~DGTL~d 246 (393)
-..++||+||||+.
T Consensus 591 ~RLlfLDyDGTLap 604 (934)
T PLN03064 591 NRLLILGFNATLTE 604 (934)
T ss_pred ceEEEEecCceecc
Confidence 35889999999997
No 397
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=43.24 E-value=30 Score=27.95 Aligned_cols=28 Identities=7% Similarity=0.221 Sum_probs=23.6
Q ss_pred CCccHHHHHHHHHHCCCeEEEEcCCCCC
Q 016204 47 PYPGAISTLEMLATTGAKMVVISNSSRR 74 (393)
Q Consensus 47 ~ipga~eal~~L~~~G~~v~~~TN~~~~ 74 (393)
--+...++++.++++|.+++.+||+...
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~~~s 86 (120)
T cd05710 59 NTKETVAAAKFAKEKGATVIGLTDDEDS 86 (120)
T ss_pred CChHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 3467999999999999999999986543
No 398
>PLN02389 biotin synthase
Probab=42.92 E-value=3.5e+02 Score=26.86 Aligned_cols=42 Identities=10% Similarity=0.172 Sum_probs=31.4
Q ss_pred CCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCc
Q 016204 47 PYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (393)
Q Consensus 47 ~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~ 90 (393)
.++...++++.+++.|..++ .+++....+.+++|++.|++..
T Consensus 151 ~~e~i~eiir~ik~~~l~i~--~s~G~l~~E~l~~LkeAGld~~ 192 (379)
T PLN02389 151 NFNQILEYVKEIRGMGMEVC--CTLGMLEKEQAAQLKEAGLTAY 192 (379)
T ss_pred HHHHHHHHHHHHhcCCcEEE--ECCCCCCHHHHHHHHHcCCCEE
Confidence 35788999999998776643 4445566788889999998743
No 399
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=42.57 E-value=13 Score=37.06 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=31.8
Q ss_pred cccccCCCcHHHHHHHH----HHhCCCCCcEE-EEecCchhhHHHHHHcCCeEEEE
Q 016204 300 EVRWMGKPDKIIYKSAM----AMVGVDACDSI-AVGDSLHHDIKGANAAGIQSVFI 350 (393)
Q Consensus 300 ~~~~~gKP~p~~~~~~~----~~lgi~~~~~v-~VGDsl~~Di~~a~~aG~~~i~v 350 (393)
..+...| |+.|..++ +.+.+.++-.+ =||.. .+|+..=++.|++.--+
T Consensus 468 relIlrk--pE~FKiayLndl~slf~e~~PFyAGFGNr-iTDvisY~~vgIp~SrI 520 (580)
T COG5083 468 RELILRK--PEVFKIAYLNDLKSLFIEFDPFYAGFGNR-ITDVISYSNVGIPKSRI 520 (580)
T ss_pred hhhhhcC--hHHHHHHHHHHHHHhhCcCChhhcccccc-chhheeeccccCChhhe
Confidence 4455566 44666543 44556555444 69999 69999999999864433
No 400
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=41.74 E-value=55 Score=31.82 Aligned_cols=59 Identities=24% Similarity=0.305 Sum_probs=41.4
Q ss_pred CCcEEEEecc-----ccccCCCcCCccHHHHHHHHHHCCCeEEEEcCCCCCc---hHHHHHHHhCCC
Q 016204 29 RFKAWLLDQF-----GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRA---STTIDKLKSLGF 87 (393)
Q Consensus 29 ~~k~i~~DlD-----GtL~~g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~---~~~~~~l~~lG~ 87 (393)
..+.+.+|+| |...-..+.+|...+.+++|+++|+++++..+..-.. ....+.+.+.|+
T Consensus 39 P~d~i~lD~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~~~g~ 105 (339)
T cd06603 39 PYDVIWLDIEHTDGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAKDKGY 105 (339)
T ss_pred CceEEEEChHHhCCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHHHCCe
Confidence 5789999987 2222245678999999999999999999888754321 233444556665
No 401
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=41.66 E-value=22 Score=32.40 Aligned_cols=32 Identities=31% Similarity=0.301 Sum_probs=26.2
Q ss_pred CcEEEEeccccccC----CCcCCccHHHHHHHHHHC
Q 016204 30 FKAWLLDQFGVLHD----GKKPYPGAISTLEMLATT 61 (393)
Q Consensus 30 ~k~i~~DlDGtL~~----g~~~ipga~eal~~L~~~ 61 (393)
+++|++||.||... -+.++|-|.+.+..+-+.
T Consensus 1 ~~~~l~diegt~~~isfv~~~lfpy~~~~~~~~l~~ 36 (220)
T TIGR01691 1 IKNVLLDIEGTTGSISFVHDVLFPYAASRLESFVND 36 (220)
T ss_pred CCEEEEecCCCcccHHHHHhhhhHHHHHHHHHHHHH
Confidence 47899999999876 457789999999886653
No 402
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=41.55 E-value=49 Score=33.13 Aligned_cols=53 Identities=15% Similarity=0.112 Sum_probs=40.3
Q ss_pred eccccccCCC-cC--CccHHHHHHHHHHCCCeEEEE-cCCC-CCchHHHHHHHhCCCC
Q 016204 36 DQFGVLHDGK-KP--YPGAISTLEMLATTGAKMVVI-SNSS-RRASTTIDKLKSLGFD 88 (393)
Q Consensus 36 DlDGtL~~g~-~~--ipga~eal~~L~~~G~~v~~~-TN~~-~~~~~~~~~l~~lG~~ 88 (393)
+.+|+.+.|. .+ .|...+.++.+++.|+++.+. ||.+ -...+..+++.++|++
T Consensus 73 ~~ggVtisGGGepl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~gld 130 (404)
T TIGR03278 73 RDTKVTISGGGDVSCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDNGVR 130 (404)
T ss_pred CCCEEEEECCcccccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHcCCC
Confidence 4566666655 33 378999999999999999986 9865 3456778888888874
No 403
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=39.68 E-value=18 Score=30.46 Aligned_cols=15 Identities=20% Similarity=0.284 Sum_probs=13.1
Q ss_pred cEEEEecCCccccCH
Q 016204 234 DLILFDLKNFNLVSV 248 (393)
Q Consensus 234 k~iiFD~DGTL~ds~ 248 (393)
+.+++|+||||+.+.
T Consensus 3 ~~lvldld~tl~~~~ 17 (148)
T smart00577 3 KTLVLDLDETLVHST 17 (148)
T ss_pred cEEEEeCCCCeECCC
Confidence 578999999999974
No 404
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=39.14 E-value=46 Score=25.56 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=22.6
Q ss_pred CCCeEEEEcCCCCCchHHHHHHHhCCCC
Q 016204 61 TGAKMVVISNSSRRASTTIDKLKSLGFD 88 (393)
Q Consensus 61 ~G~~v~~~TN~~~~~~~~~~~l~~lG~~ 88 (393)
.+.++++..+++.++......|+++|+.
T Consensus 60 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~ 87 (100)
T cd01523 60 DDQEVTVICAKEGSSQFVAELLAERGYD 87 (100)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHcCce
Confidence 5678888887777777788889999996
No 405
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=38.68 E-value=35 Score=27.48 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=21.9
Q ss_pred CCccHHHHHHHHHHCCCeEEEEcCCC
Q 016204 47 PYPGAISTLEMLATTGAKMVVISNSS 72 (393)
Q Consensus 47 ~ipga~eal~~L~~~G~~v~~~TN~~ 72 (393)
--+...++++.++++|.+++.+|+++
T Consensus 55 ~t~e~i~~~~~a~~~g~~iI~IT~~~ 80 (119)
T cd05017 55 NTEETLSAVEQAKERGAKIVAITSGG 80 (119)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 34578899999999999999999654
No 406
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=38.18 E-value=55 Score=33.01 Aligned_cols=58 Identities=19% Similarity=0.267 Sum_probs=39.7
Q ss_pred cEEEEeccccccCCC-cCC-ccHHHHHHHHHHCCCeEEEEcCCCCCch----HHHHHHH-hCCCC
Q 016204 31 KAWLLDQFGVLHDGK-KPY-PGAISTLEMLATTGAKMVVISNSSRRAS----TTIDKLK-SLGFD 88 (393)
Q Consensus 31 k~i~~DlDGtL~~g~-~~i-pga~eal~~L~~~G~~v~~~TN~~~~~~----~~~~~l~-~lG~~ 88 (393)
=++++=-||++.+=. .-+ +--.+.+++|++-||||+++=|+.++.. ++++.|. +.+.+
T Consensus 147 IGiVVTTDGSi~dipRe~Y~eAEervI~ELk~igKPFvillNs~~P~s~et~~L~~eL~ekY~vp 211 (492)
T PF09547_consen 147 IGIVVTTDGSITDIPRENYVEAEERVIEELKEIGKPFVILLNSTKPYSEETQELAEELEEKYDVP 211 (492)
T ss_pred eeEEEecCCCccCCChHHHHHHHHHHHHHHHHhCCCEEEEEeCCCCCCHHHHHHHHHHHHHhCCc
Confidence 356777899988732 223 4456689999999999999999876642 3444443 34444
No 407
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices. The structure is similar to that of a molybdenum cofactor carrier protein.; PDB: 3IMK_A.
Probab=37.81 E-value=29 Score=29.37 Aligned_cols=35 Identities=23% Similarity=0.217 Sum_probs=27.0
Q ss_pred EEeccccccCCCcCC-ccHHHHHHHHHHCCCeEEEE
Q 016204 34 LLDQFGVLHDGKKPY-PGAISTLEMLATTGAKMVVI 68 (393)
Q Consensus 34 ~~DlDGtL~~g~~~i-pga~eal~~L~~~G~~v~~~ 68 (393)
+.|-||||+-....+ -|+.-..+..++.+|++.++
T Consensus 61 V~DsDgTlI~~~g~l~GGt~lT~~~a~~~~KP~l~i 96 (145)
T PF12694_consen 61 VRDSDGTLIFTRGELTGGTALTVEFARKHGKPCLHI 96 (145)
T ss_dssp HHTSSEEEEEESSS--HHHHHHHHHHHHTT--EEEE
T ss_pred hhhcCeEEEEecCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 458899988766555 47999999999999999998
No 408
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=37.66 E-value=35 Score=31.42 Aligned_cols=39 Identities=13% Similarity=0.140 Sum_probs=31.3
Q ss_pred ccccccCCCcCC--ccHHHHHHHHHHCCCeEEEEcCCCCCc
Q 016204 37 QFGVLHDGKKPY--PGAISTLEMLATTGAKMVVISNSSRRA 75 (393)
Q Consensus 37 lDGtL~~g~~~i--pga~eal~~L~~~G~~v~~~TN~~~~~ 75 (393)
...+.+.|.+|+ +...+.+++|++.|+++.+-||.+...
T Consensus 73 ~~~V~lTGGEPll~~~l~~li~~l~~~g~~v~leTNGtl~~ 113 (238)
T TIGR03365 73 PLHVSLSGGNPALQKPLGELIDLGKAKGYRFALETQGSVWQ 113 (238)
T ss_pred CCeEEEeCCchhhhHhHHHHHHHHHHCCCCEEEECCCCCcH
Confidence 345666677765 678999999999999999999987654
No 409
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=37.65 E-value=57 Score=30.54 Aligned_cols=45 Identities=22% Similarity=0.218 Sum_probs=37.3
Q ss_pred cEEEE-eccccccCCCcCC---ccHHHHHHHHHHCCCeEEEEcCCCCCc
Q 016204 31 KAWLL-DQFGVLHDGKKPY---PGAISTLEMLATTGAKMVVISNSSRRA 75 (393)
Q Consensus 31 k~i~~-DlDGtL~~g~~~i---pga~eal~~L~~~G~~v~~~TN~~~~~ 75 (393)
+.+.. .++|+-+.|+.+. +.+.+.++.+|+.|.++++.||..-..
T Consensus 77 ~~~~~~~~~gvt~SGGEP~~q~e~~~~~~~~ake~Gl~~~l~TnG~~~~ 125 (260)
T COG1180 77 KAFYSESGGGVTFSGGEPTLQAEFALDLLRAAKERGLHVALDTNGFLPP 125 (260)
T ss_pred HhhhcCCCCEEEEECCcchhhHHHHHHHHHHHHHCCCcEEEEcCCCCCH
Confidence 34444 7999999999885 679999999999999999999976443
No 410
>COG3727 Vsr DNA G:T-mismatch repair endonuclease [DNA replication, recombination, and repair]
Probab=37.59 E-value=51 Score=27.44 Aligned_cols=19 Identities=11% Similarity=0.447 Sum_probs=15.6
Q ss_pred hcCCcEEEEeccccccCCCc
Q 016204 27 TRRFKAWLLDQFGVLHDGKK 46 (393)
Q Consensus 27 ~~~~k~i~~DlDGtL~~g~~ 46 (393)
|.+|++++| +-|+.|+++.
T Consensus 54 l~~y~~viF-vHGCFWh~H~ 72 (150)
T COG3727 54 LPKYRCVIF-VHGCFWHGHH 72 (150)
T ss_pred ecCceEEEE-EeeeeccCCc
Confidence 348999999 8999999763
No 411
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=37.33 E-value=3.8e+02 Score=25.68 Aligned_cols=55 Identities=18% Similarity=0.166 Sum_probs=35.5
Q ss_pred EEeccccccCCCc-CC-----ccHHHHHHHHHHCCCeEE-EEcCCCCCc----hHHHHHHHhCCCCC
Q 016204 34 LLDQFGVLHDGKK-PY-----PGAISTLEMLATTGAKMV-VISNSSRRA----STTIDKLKSLGFDP 89 (393)
Q Consensus 34 ~~DlDGtL~~g~~-~i-----pga~eal~~L~~~G~~v~-~~TN~~~~~----~~~~~~l~~lG~~~ 89 (393)
+.|-|.+|+.++. .+ .-+..+|+.+.++|+++. +++ -+|+. +..++.|.+.|++.
T Consensus 116 I~~g~~ILT~~~Sg~lat~~~~tv~~~l~~A~~~g~~~~V~v~-EsrP~~~G~~~~a~~L~~~gI~v 181 (303)
T TIGR00524 116 IKDGDTVLTHCNAGALATSDYGTALGVIRSAWEDGKRIRVIAC-ETRPRNQGSRLTAWELMQDGIDV 181 (303)
T ss_pred ccCCCEEEEecCCccccccCcchHHHHHHHHHHcCCceEEEEC-CCCCccchHHHHHHHHHHCCCCE
Confidence 4476767887754 22 225678888888888773 444 33443 34578898999863
No 412
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=37.28 E-value=1.2e+02 Score=23.02 Aligned_cols=61 Identities=11% Similarity=0.156 Sum_probs=35.9
Q ss_pred ccHHHHhhhcCCcEEEEeccccccCCCcCCccHHHHHHHHHHC--CCeEEEEcCCCCCchHHHHHHHhCCCC
Q 016204 19 NGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATT--GAKMVVISNSSRRASTTIDKLKSLGFD 88 (393)
Q Consensus 19 ~~~~~~~~~~~~k~i~~DlDGtL~~g~~~ipga~eal~~L~~~--G~~v~~~TN~~~~~~~~~~~l~~lG~~ 88 (393)
+.+.+.+.-..++++++|++=. . -...+.++.|++. +.+++++|++. .........+.|..
T Consensus 33 ~~~~~~~~~~~~d~iiid~~~~----~---~~~~~~~~~i~~~~~~~~ii~~t~~~--~~~~~~~~~~~g~~ 95 (112)
T PF00072_consen 33 EEALELLKKHPPDLIIIDLELP----D---GDGLELLEQIRQINPSIPIIVVTDED--DSDEVQEALRAGAD 95 (112)
T ss_dssp HHHHHHHHHSTESEEEEESSSS----S---SBHHHHHHHHHHHTTTSEEEEEESST--SHHHHHHHHHTTES
T ss_pred HHHHHHhcccCceEEEEEeeec----c---ccccccccccccccccccEEEecCCC--CHHHHHHHHHCCCC
Confidence 3334444445789999984311 0 2366777777774 58999999443 33333344467763
No 413
>PLN03017 trehalose-phosphatase
Probab=37.16 E-value=19 Score=35.55 Aligned_cols=12 Identities=8% Similarity=0.080 Sum_probs=10.4
Q ss_pred cEEEEecCCccc
Q 016204 234 DLILFDLKNFNL 245 (393)
Q Consensus 234 k~iiFD~DGTL~ 245 (393)
.++++|+||||+
T Consensus 112 ~llflD~DGTL~ 123 (366)
T PLN03017 112 IVMFLDYDGTLS 123 (366)
T ss_pred eEEEEecCCcCc
Confidence 467889999999
No 414
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=37.15 E-value=1.5e+02 Score=32.48 Aligned_cols=42 Identities=12% Similarity=0.195 Sum_probs=29.2
Q ss_pred CcEEEEeccccccC------------CCcCCccHHHHHHHHHHCCCeEEEEcCC
Q 016204 30 FKAWLLDQFGVLHD------------GKKPYPGAISTLEMLATTGAKMVVISNS 71 (393)
Q Consensus 30 ~k~i~~DlDGtL~~------------g~~~ipga~eal~~L~~~G~~v~~~TN~ 71 (393)
.+.+.||+|-.=.. =+.+-...++|+.+.|+.|++++.+|..
T Consensus 562 p~~~~f~~d~~n~p~~nl~FlGl~s~idPPR~~vP~Av~~CrsAGIkvimVTgd 615 (1019)
T KOG0203|consen 562 PRGFQFDTDDVNFPTDNLRFLGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGD 615 (1019)
T ss_pred CCceEeecCCCCCcchhccccchhhccCCCcccCchhhhhhhhhCceEEEEecC
Confidence 46777888654221 1123345788999999999999999943
No 415
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=37.07 E-value=21 Score=31.06 Aligned_cols=40 Identities=20% Similarity=0.191 Sum_probs=32.6
Q ss_pred HHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCcc
Q 016204 315 AMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATE 358 (393)
Q Consensus 315 ~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~ 358 (393)
+.+.+++ -++++|+..|-++.|+++|++.+++.+-+++..
T Consensus 129 ~vrth~i----dlf~ed~~~na~~iAk~~~~~vilins~ynRkp 168 (194)
T COG5663 129 AVRTHNI----DLFFEDSHDNAGQIAKNAGIPVILINSPYNRKP 168 (194)
T ss_pred hhHhhcc----CccccccCchHHHHHHhcCCcEEEecCcccccc
Confidence 3445555 368999988999999999999999999887765
No 416
>cd07042 STAS_SulP_like_sulfate_transporter Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function. The SulP family is a large and diverse family of anion transporters, with members from eubacteria, plants, fungi, and mammals. They contain 10 to 14 transmembrane helices which form the catalytic core of the protein and a C-terminal extension, the STAS (Sulphate Transporter and AntiSigma factor antagonist) domain which plays a role in the function and regulation of the transport activity. The STAS domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.
Probab=37.04 E-value=77 Score=24.22 Aligned_cols=55 Identities=15% Similarity=0.122 Sum_probs=38.4
Q ss_pred CcEEEEeccccccCCCcCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCC
Q 016204 30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (393)
Q Consensus 30 ~k~i~~DlDGtL~~g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~ 88 (393)
.+.+++|+-++=.-+...+.--.++.+.++++|+++.|.. .+ ..+.+.+...|+.
T Consensus 41 ~~~lilD~~~v~~iDss~~~~L~~~~~~~~~~~~~~~l~~--~~--~~~~~~l~~~g~~ 95 (107)
T cd07042 41 LKVVILDLSAVNFIDSTAAEALEELVKDLRKRGVELYLAG--LN--PQVRELLERAGLL 95 (107)
T ss_pred ceEEEEECCCCchhhHHHHHHHHHHHHHHHHCCCEEEEec--CC--HHHHHHHHHcCcH
Confidence 3788999999866555555556677888889998888875 22 2555666667764
No 417
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=36.86 E-value=39 Score=29.25 Aligned_cols=27 Identities=11% Similarity=0.201 Sum_probs=22.4
Q ss_pred CccHHHHHHHHHHCCCeEEEEcCCCCC
Q 016204 48 YPGAISTLEMLATTGAKMVVISNSSRR 74 (393)
Q Consensus 48 ipga~eal~~L~~~G~~v~~~TN~~~~ 74 (393)
-+...++++.++++|.+++.+|++...
T Consensus 85 t~~~i~~~~~ak~~g~~ii~IT~~~~s 111 (179)
T TIGR03127 85 TESLVTVAKKAKEIGATVAAITTNPES 111 (179)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 456889999999999999999987643
No 418
>PF03537 Glyco_hydro_114: Glycoside-hydrolase family GH114; InterPro: IPR004352 Eighty-one archaeal-like genes, ranging in size from 4-20kb, are clustered in 15 regions of the Thermotoga maritima genome []. Conservation of gene order between T. maritima and Archaea in many of these regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea []. One of the T. maritima sequences (hypothetical protein TM1410) shares similarity with Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1477 and with hypothetical protein DR0705 from Deinococcus radiodurans. The sequences are characterised by relatively variable N- and C-terminal domains, and a more conserved central domain. They share no similarity with any other known, functionally or structurally characterised proteins. ; PDB: 2AAM_F.
Probab=36.52 E-value=58 Score=24.03 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=21.6
Q ss_pred CCcEEEEeccccccCCCcCCccHHHHHHHHHHCCCeEEEEcC
Q 016204 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISN 70 (393)
Q Consensus 29 ~~k~i~~DlDGtL~~g~~~ipga~eal~~L~~~G~~v~~~TN 70 (393)
.++++.+|+.- -..+.|+.|+++|++++.-=|
T Consensus 26 ~~~v~~iD~~~----------~~~~~I~~L~~~G~~vicY~s 57 (74)
T PF03537_consen 26 DVDVVVIDLFD----------FSKEEIARLKAQGKKVICYFS 57 (74)
T ss_dssp S-SEEEE-SBS------------HHHHHHHHHTT-EEEEEEE
T ss_pred CCCEEEECCcc----------CCHHHHHHHHHCCCEEEEEEe
Confidence 78888888775 468899999999988755444
No 419
>COG4483 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.43 E-value=36 Score=24.50 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=21.0
Q ss_pred HHHHHHHhCCCCCcEEEEecCchhhHHHHH
Q 016204 312 YKSAMAMVGVDACDSIAVGDSLHHDIKGAN 341 (393)
Q Consensus 312 ~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~ 341 (393)
.+.+++++|+ ++++||+ ..||++.+
T Consensus 7 VqQlLK~~G~----ivyfg~r-~~~iemm~ 31 (68)
T COG4483 7 VQQLLKKFGI----IVYFGKR-LYDIEMMQ 31 (68)
T ss_pred HHHHHHHCCe----eeecCCH-HHHHHHHH
Confidence 3567888887 9999999 79999875
No 420
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=35.77 E-value=44 Score=31.71 Aligned_cols=48 Identities=23% Similarity=0.322 Sum_probs=34.0
Q ss_pred cccCCCcCC--ccHHHHHHHHHHCCC-eEEEEcCCCCCchHHHHHHHhCCCC
Q 016204 40 VLHDGKKPY--PGAISTLEMLATTGA-KMVVISNSSRRASTTIDKLKSLGFD 88 (393)
Q Consensus 40 tL~~g~~~i--pga~eal~~L~~~G~-~v~~~TN~~~~~~~~~~~l~~lG~~ 88 (393)
+.+.|.+|. +...+.++.+++.|. .+.+.||.... .+.++.|.+.|+.
T Consensus 60 I~~tGGEPll~~~l~~iv~~l~~~g~~~v~i~TNG~ll-~~~~~~l~~~g~~ 110 (302)
T TIGR02668 60 VKITGGEPLLRKDLIEIIRRIKDYGIKDVSMTTNGILL-EKLAKKLKEAGLD 110 (302)
T ss_pred EEEECcccccccCHHHHHHHHHhCCCceEEEEcCchHH-HHHHHHHHHCCCC
Confidence 334455554 678899999999998 88888886433 4566677777763
No 421
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=35.75 E-value=23 Score=36.32 Aligned_cols=22 Identities=14% Similarity=0.135 Sum_probs=17.6
Q ss_pred CCcEEEEeccccccCCCcCCcc
Q 016204 29 RFKAWLLDQFGVLHDGKKPYPG 50 (393)
Q Consensus 29 ~~k~i~~DlDGtL~~g~~~ipg 50 (393)
+.++++||+||||+.+...+|.
T Consensus 7 ~~~~~~fD~DGTLlrs~ssFpy 28 (498)
T PLN02499 7 TSYSVVSELEGTLLKDADPFSY 28 (498)
T ss_pred ccceEEEecccceecCCCccHH
Confidence 4578999999999997766553
No 422
>PTZ00445 p36-lilke protein; Provisional
Probab=35.68 E-value=15 Score=33.24 Aligned_cols=14 Identities=14% Similarity=0.105 Sum_probs=13.4
Q ss_pred ccEEEEecCCcccc
Q 016204 233 TDLILFDLKNFNLV 246 (393)
Q Consensus 233 ~k~iiFD~DGTL~d 246 (393)
||+|++|+|.||+.
T Consensus 43 Ik~Va~D~DnTlI~ 56 (219)
T PTZ00445 43 IKVIASDFDLTMIT 56 (219)
T ss_pred CeEEEecchhhhhh
Confidence 79999999999998
No 423
>PRK05320 rhodanese superfamily protein; Provisional
Probab=35.59 E-value=1.8e+02 Score=27.10 Aligned_cols=28 Identities=18% Similarity=0.378 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCCchHHHHHHHhCCCC
Q 016204 61 TGAKMVVISNSSRRASTTIDKLKSLGFD 88 (393)
Q Consensus 61 ~G~~v~~~TN~~~~~~~~~~~l~~lG~~ 88 (393)
+++++++.-.++.++......|++.|+.
T Consensus 174 kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~ 201 (257)
T PRK05320 174 AGKTVVSFCTGGIRCEKAAIHMQEVGID 201 (257)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCc
Confidence 4678887777777777788889999994
No 424
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=35.45 E-value=43 Score=29.03 Aligned_cols=27 Identities=19% Similarity=0.366 Sum_probs=20.6
Q ss_pred CCccHHHHHHHHHHCCCeEEEEcCCCC
Q 016204 47 PYPGAISTLEMLATTGAKMVVISNSSR 73 (393)
Q Consensus 47 ~ipga~eal~~L~~~G~~v~~~TN~~~ 73 (393)
--+.+.++++.++++|.+++.+||++.
T Consensus 113 ~t~~~i~~~~~ak~~Ga~vI~IT~~~~ 139 (177)
T cd05006 113 NSPNVLKALEAAKERGMKTIALTGRDG 139 (177)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 346688888888888888888887643
No 425
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=35.16 E-value=23 Score=30.50 Aligned_cols=15 Identities=20% Similarity=0.284 Sum_probs=13.1
Q ss_pred cEEEEecCCccccCH
Q 016204 234 DLILFDLKNFNLVSV 248 (393)
Q Consensus 234 k~iiFD~DGTL~ds~ 248 (393)
+.+++|+|+||+.|.
T Consensus 2 ~~lvlDLDeTLi~~~ 16 (162)
T TIGR02251 2 KTLVLDLDETLVHST 16 (162)
T ss_pred cEEEEcCCCCcCCCC
Confidence 578999999999873
No 426
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=35.07 E-value=24 Score=36.09 Aligned_cols=17 Identities=18% Similarity=0.186 Sum_probs=14.1
Q ss_pred ccEEEEecCCccccCHH
Q 016204 233 TDLILFDLKNFNLVSVD 249 (393)
Q Consensus 233 ~k~iiFD~DGTL~ds~~ 249 (393)
.+.++||+||||+-|.+
T Consensus 8 ~~~~~fD~DGTLlrs~s 24 (498)
T PLN02499 8 SYSVVSELEGTLLKDAD 24 (498)
T ss_pred cceEEEecccceecCCC
Confidence 35799999999998654
No 427
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=34.82 E-value=4e+02 Score=25.20 Aligned_cols=54 Identities=13% Similarity=0.206 Sum_probs=36.2
Q ss_pred EEEeccccccCCCcCCccHHHHHHHHHHCCCeEE-EEcCCCCCc---hHHHHHHHhCCCCC
Q 016204 33 WLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMV-VISNSSRRA---STTIDKLKSLGFDP 89 (393)
Q Consensus 33 i~~DlDGtL~~g~~~ipga~eal~~L~~~G~~v~-~~TN~~~~~---~~~~~~l~~lG~~~ 89 (393)
++-|-|.+|++++. .-+..+|..+.++|+++- +++ -+|+. ..+++.|.+.|++.
T Consensus 106 ~I~~g~~ILTh~~S--~tv~~~l~~A~~~gk~~~V~v~-EsrP~~qG~~la~eL~~~GI~v 163 (275)
T PRK08335 106 LIDDGDVIITHSFS--SAVLEILKTAKRKGKRFKVILT-ESAPDYEGLALANELEFLGIEF 163 (275)
T ss_pred HcCCCCEEEEECCc--HHHHHHHHHHHHcCCceEEEEe-cCCCchhHHHHHHHHHHCCCCE
Confidence 34466667777765 237788899999998653 333 24443 35788898999863
No 428
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=34.73 E-value=1.1e+02 Score=25.87 Aligned_cols=18 Identities=6% Similarity=0.108 Sum_probs=7.9
Q ss_pred HHHHHHHHHCCCeEEEEc
Q 016204 52 ISTLEMLATTGAKMVVIS 69 (393)
Q Consensus 52 ~eal~~L~~~G~~v~~~T 69 (393)
.|+++.+.+....++.+|
T Consensus 53 ~e~v~aA~~~dv~vIgvS 70 (143)
T COG2185 53 EEAVRAAVEEDVDVIGVS 70 (143)
T ss_pred HHHHHHHHhcCCCEEEEE
Confidence 344444444444444444
No 429
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=34.51 E-value=69 Score=31.54 Aligned_cols=68 Identities=15% Similarity=0.236 Sum_probs=43.9
Q ss_pred cHHHHhhhcCCcEEEEecccc---cc---CCC-cCCccHHHHHHHHHHCCCeEEEEcCCCC----CchHHHHHHHhCCCC
Q 016204 20 GLRHIAETRRFKAWLLDQFGV---LH---DGK-KPYPGAISTLEMLATTGAKMVVISNSSR----RASTTIDKLKSLGFD 88 (393)
Q Consensus 20 ~~~~~~~~~~~k~i~~DlDGt---L~---~g~-~~ipga~eal~~L~~~G~~v~~~TN~~~----~~~~~~~~l~~lG~~ 88 (393)
.++.|.+. .++.|.+.+||. .+ .|. ..+..+.++++.|++.|+++.+.+-=++ ...++.+.+.++|++
T Consensus 106 ~~~~L~~~-g~~~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~v~i~~vv~~~N~~~i~~~~~~~~~lgv~ 184 (378)
T PRK05301 106 RLAALKDA-GLDHIQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAHGYPLTLNAVIHRHNIDQIPRIIELAVELGAD 184 (378)
T ss_pred HHHHHHHc-CCCEEEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHCCCceEEEEEeecCCHHHHHHHHHHHHHcCCC
Confidence 34455441 367899999995 22 233 3667789999999999998866542111 223556666677774
No 430
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=34.26 E-value=89 Score=30.07 Aligned_cols=44 Identities=16% Similarity=0.275 Sum_probs=34.9
Q ss_pred CCcEEEEecc-----ccccCCCcCCccHHHHHHHHHHCCCeEEEEcCCC
Q 016204 29 RFKAWLLDQF-----GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS 72 (393)
Q Consensus 29 ~~k~i~~DlD-----GtL~~g~~~ipga~eal~~L~~~G~~v~~~TN~~ 72 (393)
..+.+.+|+| +...-..+.+|...+.++.|+++|+++++..+..
T Consensus 39 P~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~ 87 (317)
T cd06600 39 PYDVVFLDIHYMDSYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPG 87 (317)
T ss_pred CcceEEEChhhhCCCCceeechhcCCCHHHHHHHHHHCCCEEEEEeecc
Confidence 5689999976 3333345678999999999999999998887654
No 431
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=34.09 E-value=63 Score=30.15 Aligned_cols=45 Identities=20% Similarity=0.329 Sum_probs=35.4
Q ss_pred CCcEEEEecc-----ccc--cCCCcCCccHHHHHHHHHHCCCeEEEEcCCCC
Q 016204 29 RFKAWLLDQF-----GVL--HDGKKPYPGAISTLEMLATTGAKMVVISNSSR 73 (393)
Q Consensus 29 ~~k~i~~DlD-----GtL--~~g~~~ipga~eal~~L~~~G~~v~~~TN~~~ 73 (393)
..+.+.+|.+ |.. .-+.+.+|..++.+++|+++|+++++.++..-
T Consensus 39 P~d~~~lD~~~~~~~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 39 PLDGFVLDDDYTDGYGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred CccEEEECcccccCCceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 5689999976 334 22456789999999999999999999997653
No 432
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=33.97 E-value=3e+02 Score=23.48 Aligned_cols=53 Identities=15% Similarity=0.161 Sum_probs=36.5
Q ss_pred eccccccCCCcCC--c--cHHHHHHHHHHCC-----CeEEEEcCCCCCchHHHHHHHhCCCC
Q 016204 36 DQFGVLHDGKKPY--P--GAISTLEMLATTG-----AKMVVISNSSRRASTTIDKLKSLGFD 88 (393)
Q Consensus 36 DlDGtL~~g~~~i--p--ga~eal~~L~~~G-----~~v~~~TN~~~~~~~~~~~l~~lG~~ 88 (393)
+++.+.+-|..+. + ...+.++.+++.+ ..+.+.||.+.......+.|.+.|+.
T Consensus 51 ~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tn~~~~~~~~~~~l~~~~~~ 112 (216)
T smart00729 51 LVGTVFIGGGTPTLLSPEQLEELLEAIREILGLADDVEITIETRPGTLTEELLEALKEAGVN 112 (216)
T ss_pred ceeEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCcccCCHHHHHHHHHcCCC
Confidence 4556655555444 3 3577888888874 56778887555567888889888874
No 433
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=33.35 E-value=75 Score=32.71 Aligned_cols=50 Identities=20% Similarity=0.375 Sum_probs=39.5
Q ss_pred CcCCccHHHHHHHHHHCCCeEEEEcCCC-CC---chHHHHHHHhCCCCCcccce
Q 016204 45 KKPYPGAISTLEMLATTGAKMVVISNSS-RR---ASTTIDKLKSLGFDPSLFAG 94 (393)
Q Consensus 45 ~~~ipga~eal~~L~~~G~~v~~~TN~~-~~---~~~~~~~l~~lG~~~~~~~~ 94 (393)
+...|-+.|||+++|+.|.|++++-|.- ++ .......|++.|+....|.+
T Consensus 90 DGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg 143 (509)
T COG0532 90 DGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGG 143 (509)
T ss_pred CCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCC
Confidence 4567899999999999999999999964 32 24667778889997665554
No 434
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=33.22 E-value=43 Score=29.21 Aligned_cols=26 Identities=19% Similarity=0.133 Sum_probs=20.0
Q ss_pred EEEEeccccccCCCcCCccHHHHHHH
Q 016204 32 AWLLDQFGVLHDGKKPYPGAISTLEM 57 (393)
Q Consensus 32 ~i~~DlDGtL~~g~~~ipga~eal~~ 57 (393)
-+.+|||||+.+....+|.--.+.+.
T Consensus 8 ~~ciDIDGtit~~~t~~~~~n~~f~k 33 (194)
T COG5663 8 RCCIDIDGTITDDPTFAPYLNPAFEK 33 (194)
T ss_pred heeeccCCceecCcccchhccHHHHh
Confidence 46899999999998888765555553
No 435
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=33.02 E-value=62 Score=33.37 Aligned_cols=80 Identities=19% Similarity=0.265 Sum_probs=52.1
Q ss_pred cccCCCchhhhhccHH-HHhhhcCCcEEEEe---ccccccCCCcCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHH
Q 016204 7 VQSNDPHLFQTLNGLR-HIAETRRFKAWLLD---QFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKL 82 (393)
Q Consensus 7 ~~~~~~~~~~~~~~~~-~~~~~~~~k~i~~D---lDGtL~~g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l 82 (393)
+++...|.|..++..- +++....--+++.. +-||++-.+..-||.+|-+.+||+.|++-+.+|+..+.+.... -
T Consensus 404 v~~~~g~~p~~l~~~~~~vs~~GGTPL~V~~~~~~~GVI~LkDivK~Gi~ERf~elR~MgIkTvM~TGDN~~TAa~I--A 481 (681)
T COG2216 404 VRERGGHIPEDLDAAVDEVSRLGGTPLVVVENGRILGVIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAI--A 481 (681)
T ss_pred HHhcCCCCCHHHHHHHHHHHhcCCCceEEEECCEEEEEEEehhhcchhHHHHHHHHHhcCCeEEEEeCCCHHHHHHH--H
Confidence 3445555666555433 44443333444443 5588888888889999999999999999999997444343222 2
Q ss_pred HhCCCC
Q 016204 83 KSLGFD 88 (393)
Q Consensus 83 ~~lG~~ 88 (393)
++.|.+
T Consensus 482 ~EAGVD 487 (681)
T COG2216 482 AEAGVD 487 (681)
T ss_pred HHhCch
Confidence 356764
No 436
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=32.52 E-value=68 Score=30.30 Aligned_cols=38 Identities=21% Similarity=0.268 Sum_probs=30.8
Q ss_pred ccccccCCCcCC--ccH-HHHHHHHHHCCCeEEEEcCCCCC
Q 016204 37 QFGVLHDGKKPY--PGA-ISTLEMLATTGAKMVVISNSSRR 74 (393)
Q Consensus 37 lDGtL~~g~~~i--pga-~eal~~L~~~G~~v~~~TN~~~~ 74 (393)
..|+.+.|++++ +.. .+.++++++.|+++.+.||....
T Consensus 126 ~~~V~~sGGEPll~~~~l~~l~~~~k~~g~~~~i~TnG~~~ 166 (295)
T TIGR02494 126 GGGVTLSGGEPLLQPEFALALLQACHERGIHTAVETSGFTP 166 (295)
T ss_pred CCcEEeeCcchhchHHHHHHHHHHHHHcCCcEeeeCCCCCC
Confidence 467888888776 553 68999999999999999997643
No 437
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=32.49 E-value=64 Score=35.45 Aligned_cols=13 Identities=8% Similarity=0.087 Sum_probs=11.7
Q ss_pred cEEEEecCCcccc
Q 016204 234 DLILFDLKNFNLV 246 (393)
Q Consensus 234 k~iiFD~DGTL~d 246 (393)
.+++||+||||+.
T Consensus 508 rll~LDyDGTL~~ 520 (797)
T PLN03063 508 RLLILGFYGTLTE 520 (797)
T ss_pred eEEEEecCccccC
Confidence 5899999999986
No 438
>PLN02580 trehalose-phosphatase
Probab=32.44 E-value=25 Score=34.98 Aligned_cols=14 Identities=7% Similarity=-0.081 Sum_probs=11.2
Q ss_pred cEEEEecCCccccC
Q 016204 234 DLILFDLKNFNLVS 247 (393)
Q Consensus 234 k~iiFD~DGTL~ds 247 (393)
.+++||+||||..-
T Consensus 120 ~~LfLDyDGTLaPI 133 (384)
T PLN02580 120 IALFLDYDGTLSPI 133 (384)
T ss_pred eEEEEecCCccCCC
Confidence 46788999999753
No 439
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=32.42 E-value=4.8e+02 Score=25.39 Aligned_cols=56 Identities=18% Similarity=0.272 Sum_probs=36.3
Q ss_pred EEeccccccCCCc-C--C--cc-HHHHHHHHHHCCCeEEEEcCCCCCc-h--H-HHHHHHhCCCCC
Q 016204 34 LLDQFGVLHDGKK-P--Y--PG-AISTLEMLATTGAKMVVISNSSRRA-S--T-TIDKLKSLGFDP 89 (393)
Q Consensus 34 ~~DlDGtL~~g~~-~--i--pg-a~eal~~L~~~G~~v~~~TN~~~~~-~--~-~~~~l~~lG~~~ 89 (393)
+-|-|-+|++++. . . -| |...|+.++++|+++.+.---+|+. + . .+..|.+.|++.
T Consensus 134 I~~g~~ILThcnsg~la~~~~gTal~~l~~A~~~gk~f~V~v~EsRP~~qG~rlta~eL~~~GI~v 199 (329)
T PRK06371 134 IKNGARILTHCNAGALAVVDWGTALAPIRIAHRNGKNIFVFVDETRPRLQGARLTAWELAQEGIDH 199 (329)
T ss_pred cCCCCEEEEeCCCCcceeccchhHHHHHHHHHHcCCeeEEEECCCCCcchHHHHHHHHHHHCCCCE
Confidence 3365657777643 1 1 23 5688899999999876555456664 3 2 367888899863
No 440
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=32.35 E-value=52 Score=26.46 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=19.2
Q ss_pred ccHHHHHHHHHHCCCeEEEEcCCCC
Q 016204 49 PGAISTLEMLATTGAKMVVISNSSR 73 (393)
Q Consensus 49 pga~eal~~L~~~G~~v~~~TN~~~ 73 (393)
+...++++.++++|.+++.+|++..
T Consensus 74 ~~~~~~~~~a~~~g~~iv~iT~~~~ 98 (139)
T cd05013 74 KETVEAAEIAKERGAKVIAITDSAN 98 (139)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCC
Confidence 4577788888888888888887643
No 441
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=32.35 E-value=73 Score=29.18 Aligned_cols=38 Identities=16% Similarity=0.107 Sum_probs=30.1
Q ss_pred ccccccCCCcCC--cc-HHHHHHHHHHCCCeEEEEcCCCCC
Q 016204 37 QFGVLHDGKKPY--PG-AISTLEMLATTGAKMVVISNSSRR 74 (393)
Q Consensus 37 lDGtL~~g~~~i--pg-a~eal~~L~~~G~~v~~~TN~~~~ 74 (393)
.+|+-+.|++|. +. ..++++.+++.|.++.+.||....
T Consensus 71 ~~~V~~sGGEPll~~~~~~~l~~~~k~~g~~i~l~TNG~~~ 111 (246)
T PRK11145 71 GGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVR 111 (246)
T ss_pred CCeEEEeCccHhcCHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 357767777776 45 458999999999999999998753
No 442
>PF06995 Phage_P2_GpU: Phage P2 GpU; InterPro: IPR009734 This family consists of several bacterial and phage proteins of around 130 residues in length which seem to be related to the bacteriophage P2 GpU protein (O64315 from SWISSPROT) which is thought to be involved in tail assembly [].
Probab=32.28 E-value=48 Score=26.97 Aligned_cols=43 Identities=16% Similarity=0.103 Sum_probs=33.2
Q ss_pred CcEEEEeccccccCCCcCCccHHHHHHHHHHCCCeEEEEcCCC
Q 016204 30 FKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS 72 (393)
Q Consensus 30 ~k~i~~DlDGtL~~g~~~ipga~eal~~L~~~G~~v~~~TN~~ 72 (393)
.+.=-+-+.|+|+....-.....+.|+++.+.|.+..++.+++
T Consensus 40 ~~~~~itl~g~l~~~~~~~~~~l~~Lr~~~~~g~p~~Lv~G~G 82 (121)
T PF06995_consen 40 PGLDTITLSGVLFPEFGGGRKELDKLRAMAESGEPLPLVIGSG 82 (121)
T ss_pred CCCceEEEEEEEehHHCCCHHHHHHHHHHHHcCCceEEEECCC
Confidence 3444456788888765555678999999999999999999654
No 443
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=32.16 E-value=51 Score=26.42 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=22.5
Q ss_pred CccHHHHHHHHHHCCCeEEEEcCCCCC
Q 016204 48 YPGAISTLEMLATTGAKMVVISNSSRR 74 (393)
Q Consensus 48 ipga~eal~~L~~~G~~v~~~TN~~~~ 74 (393)
-....+.++.++++|.+++.+|++...
T Consensus 66 ~~~~~~~~~~ak~~g~~vi~iT~~~~~ 92 (131)
T PF01380_consen 66 TRELIELLRFAKERGAPVILITSNSES 92 (131)
T ss_dssp THHHHHHHHHHHHTTSEEEEEESSTTS
T ss_pred chhhhhhhHHHHhcCCeEEEEeCCCCC
Confidence 366889999999999999999976543
No 444
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=32.15 E-value=53 Score=27.86 Aligned_cols=26 Identities=12% Similarity=0.275 Sum_probs=18.5
Q ss_pred CCccHHHHHHHHHHCCCeEEEEcCCC
Q 016204 47 PYPGAISTLEMLATTGAKMVVISNSS 72 (393)
Q Consensus 47 ~ipga~eal~~L~~~G~~v~~~TN~~ 72 (393)
--+...++++.++++|.+++.+|+++
T Consensus 91 ~t~~~~~~~~~a~~~g~~ii~iT~~~ 116 (154)
T TIGR00441 91 NSKNVLKAIEAAKDKGMKTITLAGKD 116 (154)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 34567777777777777777777654
No 445
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=32.15 E-value=26 Score=31.29 Aligned_cols=14 Identities=14% Similarity=0.273 Sum_probs=13.0
Q ss_pred cEEEEecCCccccC
Q 016204 234 DLILFDLKNFNLVS 247 (393)
Q Consensus 234 k~iiFD~DGTL~ds 247 (393)
|+++.|+|+||+++
T Consensus 22 klLVLDLDeTLvh~ 35 (195)
T TIGR02245 22 KLLVLDIDYTLFDH 35 (195)
T ss_pred cEEEEeCCCceEcc
Confidence 79999999999986
No 446
>PRK11660 putative transporter; Provisional
Probab=32.02 E-value=97 Score=32.53 Aligned_cols=73 Identities=11% Similarity=-0.010 Sum_probs=49.3
Q ss_pred CCcEEEEeccccccCCCcCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCC-cccceEEeCchhHHHHH
Q 016204 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDP-SLFAGAITSGELTHQYL 106 (393)
Q Consensus 29 ~~k~i~~DlDGtL~~g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~-~~~~~iits~~~~~~~l 106 (393)
..+.+++|+.++=.-+...+.--.+..+++++ |++++++. - .....+.|++.|+.. .....++.+...+.+.+
T Consensus 490 ~~~~VVlD~~~V~~iDssg~~~L~~l~~~l~~-g~~l~l~~--l--~~~v~~~l~~~gl~~~~~~~~if~~~~~Al~~~ 563 (568)
T PRK11660 490 GKRIVVLQWDAVPVLDAGGLDAFQRFVKRLPE-GCELRICN--L--QFQPLRTLARAGIQPIPGRLAFYPTLREALADL 563 (568)
T ss_pred CCCEEEEEcCCCCcccHHHHHHHHHHHHHHHC-CCEEEEec--C--ChHHHHHHHHCCChhhcCcccccCCHHHHHHHH
Confidence 68899999999888777777778888999999 99888776 2 234666677777642 11134454443333333
No 447
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=31.55 E-value=25 Score=33.53 Aligned_cols=20 Identities=20% Similarity=0.195 Sum_probs=16.1
Q ss_pred ccEEEEecCCccccCHHHHH
Q 016204 233 TDLILFDLKNFNLVSVDIIY 252 (393)
Q Consensus 233 ~k~iiFD~DGTL~ds~~~~~ 252 (393)
+..+|||+||+|+.-...+-
T Consensus 22 ~DtfifDcDGVlW~g~~~ip 41 (306)
T KOG2882|consen 22 FDTFIFDCDGVLWLGEKPIP 41 (306)
T ss_pred cCEEEEcCCcceeecCCCCC
Confidence 67899999999998655533
No 448
>PLN02151 trehalose-phosphatase
Probab=31.47 E-value=26 Score=34.40 Aligned_cols=12 Identities=8% Similarity=0.080 Sum_probs=10.6
Q ss_pred cEEEEecCCccc
Q 016204 234 DLILFDLKNFNL 245 (393)
Q Consensus 234 k~iiFD~DGTL~ 245 (393)
.++++|+||||+
T Consensus 99 ~ll~lDyDGTL~ 110 (354)
T PLN02151 99 IVMFLDYDGTLS 110 (354)
T ss_pred eEEEEecCccCC
Confidence 468889999999
No 449
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=31.44 E-value=81 Score=23.80 Aligned_cols=46 Identities=17% Similarity=0.165 Sum_probs=31.2
Q ss_pred CCCcCCccHHHHHHHHHHCCCeEEEEcCCCCC-c-hHHHHHHHhCCCC
Q 016204 43 DGKKPYPGAISTLEMLATTGAKMVVISNSSRR-A-STTIDKLKSLGFD 88 (393)
Q Consensus 43 ~g~~~ipga~eal~~L~~~G~~v~~~TN~~~~-~-~~~~~~l~~lG~~ 88 (393)
+.++...|..+.++.+++...+++|+.++..+ . ..+...-...+++
T Consensus 8 ragkl~~G~~~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp 55 (82)
T PRK13602 8 QAKSIVIGTKQTVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVP 55 (82)
T ss_pred hcCCEEEcHHHHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCC
Confidence 45677889999999999877777777766543 3 2344434455665
No 450
>PTZ00413 lipoate synthase; Provisional
Probab=31.13 E-value=2.5e+02 Score=27.95 Aligned_cols=176 Identities=13% Similarity=0.088 Sum_probs=87.9
Q ss_pred ccccccCCCchhhhhccHHHHhhhcCCcEEEEeccccccCCCc--CC----ccHHHHHHHHHHC--CCeEEEEcCCCCCc
Q 016204 4 KCSVQSNDPHLFQTLNGLRHIAETRRFKAWLLDQFGVLHDGKK--PY----PGAISTLEMLATT--GAKMVVISNSSRRA 75 (393)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~DlDGtL~~g~~--~i----pga~eal~~L~~~--G~~v~~~TN~~~~~ 75 (393)
-|+|.+..++.+...+...+.+. ..+..-+. ..|++.+++ +- ....++++.+++. +..+.+++.--.-.
T Consensus 165 FCaqstg~~p~~lD~eEp~~vA~--av~~~Gl~-~~VVTSv~RDDL~D~ga~~~a~~I~~Ir~~~p~~~IevligDf~g~ 241 (398)
T PTZ00413 165 FCSVKTSRKPPPLDPNEPEKVAK--AVAEMGVD-YIVMTMVDRDDLPDGGASHVARCVELIKESNPELLLEALVGDFHGD 241 (398)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHH--HHHHcCCC-EEEEEEEcCCCCChhhHHHHHHHHHHHHccCCCCeEEEcCCccccC
Confidence 47777655344444444444433 11111111 335555443 22 2356778888874 57777777211335
Q ss_pred hHHHHHHHhCCCCCcccceEEeCchhHHH----------HHHcccchhh-hh--cC---CeEEEEccCCcccc------c
Q 016204 76 STTIDKLKSLGFDPSLFAGAITSGELTHQ----------YLLRRDDAWF-AA--LG---RSCIHMTWSDRGAI------S 133 (393)
Q Consensus 76 ~~~~~~l~~lG~~~~~~~~iits~~~~~~----------~l~~~~~~~~-~~--~g---~~~~~~~~~~~~~~------~ 133 (393)
.+.+++|.+.|.+... .++=|+-..... .+.... .. .. -| ...+.+|.|+...- .
T Consensus 242 ~e~l~~L~eAG~dvyn-HNLETv~rLyp~VRt~~atYe~sLe~Lr--~AKe~f~~gi~tcSGiIVGLGET~eEvie~m~d 318 (398)
T PTZ00413 242 LKSVEKLANSPLSVYA-HNIECVERITPYVRDRRASYRQSLKVLE--HVKEFTNGAMLTKSSIMLGLGETEEEVRQTLRD 318 (398)
T ss_pred HHHHHHHHhcCCCEEe-cccccCHhHHHHHccCcCCHHHHHHHHH--HHHHHhcCCceEeeeeEecCCCCHHHHHHHHHH
Confidence 5677888888887554 443333222111 111100 00 01 02 12345666665331 4
Q ss_pred cccCCceeeCCccCcCEEEecCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEeecC
Q 016204 134 LEGLGLKVVENVEEADFILAHGTEGMGLPSGDVRPMSLQDLEKILEICASKKIPMVVANP 193 (393)
Q Consensus 134 ~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 193 (393)
|.+.|+..+.- .+ + +......+ ...+.++.+.+...-+.+.+.|+..+...|
T Consensus 319 LrelGVDivtI-GQ--Y-L~Ps~~h~----~V~~yv~P~~F~~~~~~a~~~Gf~~v~sgP 370 (398)
T PTZ00413 319 LRTAGVSAVTL-GQ--Y-LQPTKTRL----KVSRYAHPKEFEMWEEEAMKMGFLYCASGP 370 (398)
T ss_pred HHHcCCcEEee-cc--c-cCCCcccC----CceeccCHHHHHHHHHHHHHcCCceEEecC
Confidence 66667654320 00 0 00000111 124667788888888889999999988776
No 451
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=30.93 E-value=29 Score=29.99 Aligned_cols=15 Identities=13% Similarity=0.118 Sum_probs=13.5
Q ss_pred ccEEEEecCCccccC
Q 016204 233 TDLILFDLKNFNLVS 247 (393)
Q Consensus 233 ~k~iiFD~DGTL~ds 247 (393)
++++++|+||||+..
T Consensus 25 v~~vv~D~Dgtl~~~ 39 (170)
T TIGR01668 25 IKGVVLDKDNTLVYP 39 (170)
T ss_pred CCEEEEecCCccccC
Confidence 799999999999963
No 452
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=30.90 E-value=4.9e+02 Score=25.00 Aligned_cols=51 Identities=20% Similarity=0.277 Sum_probs=33.8
Q ss_pred eccccccCCCcCCccHHHHHHHHHHCCCeE-EEEcCCCCCc---hHHHHHHHhCCCCC
Q 016204 36 DQFGVLHDGKKPYPGAISTLEMLATTGAKM-VVISNSSRRA---STTIDKLKSLGFDP 89 (393)
Q Consensus 36 DlDGtL~~g~~~ipga~eal~~L~~~G~~v-~~~TN~~~~~---~~~~~~l~~lG~~~ 89 (393)
|-|=.|+.+ --..+.++|..+++.|+++ +++|- ||+. ...++.|++.|++.
T Consensus 119 dg~~IlTh~--~S~~v~~~l~~A~~~~k~~~V~VtE-SRP~~eG~~~ak~L~~~gI~~ 173 (301)
T COG1184 119 DGDVILTHS--FSKTVLEVLKTAADRGKRFKVIVTE-SRPRGEGRIMAKELRQSGIPV 173 (301)
T ss_pred CCCEEEEec--CcHHHHHHHHHhhhcCCceEEEEEc-CCCcchHHHHHHHHHHcCCce
Confidence 444445544 2345889999999999865 45553 3333 46788999999853
No 453
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=30.71 E-value=53 Score=25.70 Aligned_cols=49 Identities=16% Similarity=0.166 Sum_probs=29.3
Q ss_pred cCCCcCCccHHHHHHHHHHCC-CeEEEEcCCCCCchHHHHHHHhC-CCCCc
Q 016204 42 HDGKKPYPGAISTLEMLATTG-AKMVVISNSSRRASTTIDKLKSL-GFDPS 90 (393)
Q Consensus 42 ~~g~~~ipga~eal~~L~~~G-~~v~~~TN~~~~~~~~~~~l~~l-G~~~~ 90 (393)
.+....+-|.+++|+.|+.-. |-+++++|.+...++-.+....| ++++.
T Consensus 15 vkTGkvilG~k~tiK~lk~gkaKliiiAsN~P~~~k~~ieyYAkLs~ipV~ 65 (100)
T COG1911 15 VKTGKVILGSKRTIKSLKLGKAKLIIIASNCPKELKEDIEYYAKLSDIPVY 65 (100)
T ss_pred HhcCCEEEehHHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHcCCcEE
Confidence 345567789999999998754 45566666554443333333322 55543
No 454
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=30.66 E-value=1.1e+02 Score=22.99 Aligned_cols=58 Identities=22% Similarity=0.183 Sum_probs=35.1
Q ss_pred CcEEEEecccc-ccCCC-cCCccH--------HHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCC
Q 016204 30 FKAWLLDQFGV-LHDGK-KPYPGA--------ISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (393)
Q Consensus 30 ~k~i~~DlDGt-L~~g~-~~ipga--------~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~ 88 (393)
-+.+++|+=-. -+... ..+||| .+.+..+ ..+.++++..+++.++......|+.+|+.
T Consensus 15 ~~~~ivDvR~~~e~~~~~~hi~ga~~ip~~~~~~~~~~~-~~~~~ivv~c~~g~~s~~a~~~l~~~G~~ 82 (96)
T cd01444 15 EAPVLLDVRDPASYAALPDHIPGAIHLDEDSLDDWLGDL-DRDRPVVVYCYHGNSSAQLAQALREAGFT 82 (96)
T ss_pred CCcEEEECCCHHHHhcccCCCCCCeeCCHHHHHHHHhhc-CCCCCEEEEeCCCChHHHHHHHHHHcCCc
Confidence 35788887654 22220 334442 2233333 24678888887776777777888888884
No 455
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=30.44 E-value=1.2e+02 Score=28.91 Aligned_cols=44 Identities=20% Similarity=0.187 Sum_probs=34.6
Q ss_pred CCcEEEEeccc-------cccCCCcCCccHHHHHHHHHHCCCeEEEEcCCC
Q 016204 29 RFKAWLLDQFG-------VLHDGKKPYPGAISTLEMLATTGAKMVVISNSS 72 (393)
Q Consensus 29 ~~k~i~~DlDG-------tL~~g~~~ipga~eal~~L~~~G~~v~~~TN~~ 72 (393)
.++.+.+|+|= ...-..+.+|...+.+++|+++|+++++..+..
T Consensus 39 P~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~ 89 (308)
T cd06593 39 PCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPY 89 (308)
T ss_pred CeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCC
Confidence 47889999742 333355788999999999999999999988744
No 456
>cd01037 Restriction_endonuclease_like Superfamily of nucleases including Short Patch Repair (Vsr) Endonucleases, archaeal Holliday junction resolvases, MutH methy-directed DNA mismatch-repair endonucleases, and catalytic domains of many restriction endonucleases, such as EcoRI, BamHI, and FokI
Probab=30.43 E-value=71 Score=22.39 Aligned_cols=39 Identities=18% Similarity=0.280 Sum_probs=29.1
Q ss_pred cEEEEeccccccCCCcCCccHH---HHHHHHHHCCCeEEEEc
Q 016204 31 KAWLLDQFGVLHDGKKPYPGAI---STLEMLATTGAKMVVIS 69 (393)
Q Consensus 31 k~i~~DlDGtL~~g~~~ipga~---eal~~L~~~G~~v~~~T 69 (393)
..+++++||+-+++...-.... +-...++..|.++.++.
T Consensus 38 ~~~~ie~kg~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 79 (80)
T cd01037 38 AKLVIELKGTFHDGLLRKLRTSEKQERIAFLEADGKKVLRFW 79 (80)
T ss_pred CCEEEEEECccccCchhhhhhcchHHHHHHHHHCCCEEEEEe
Confidence 4667899999998665443333 67788889999988876
No 457
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=30.18 E-value=54 Score=30.29 Aligned_cols=22 Identities=18% Similarity=0.070 Sum_probs=16.1
Q ss_pred cEEEEecCCccccCHHHHHHHH
Q 016204 234 DLILFDLKNFNLVSVDIIYSSH 255 (393)
Q Consensus 234 k~iiFD~DGTL~ds~~~~~~~~ 255 (393)
+.++.|+||||++........+
T Consensus 3 ~ll~sDlD~Tl~~~~~~~~~~l 24 (247)
T PF05116_consen 3 RLLASDLDGTLIDGDDEALARL 24 (247)
T ss_dssp EEEEEETBTTTBHCHHHHHHHH
T ss_pred EEEEEECCCCCcCCCHHHHHHH
Confidence 4688999999996555545544
No 458
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=30.07 E-value=91 Score=30.80 Aligned_cols=47 Identities=17% Similarity=0.212 Sum_probs=39.7
Q ss_pred cccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcC
Q 016204 302 RWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIG 352 (393)
Q Consensus 302 ~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~ 352 (393)
...|| ...|+.+.+++|- +-.-++|||. .---.+|++..|++.-+..
T Consensus 406 ~kiGK--escFerI~~RFg~-K~~yvvIgdG-~eee~aAK~ln~PfwrI~~ 452 (468)
T KOG3107|consen 406 TKIGK--ESCFERIQSRFGR-KVVYVVIGDG-VEEEQAAKALNMPFWRISS 452 (468)
T ss_pred hhccH--HHHHHHHHHHhCC-ceEEEEecCc-HHHHHHHHhhCCceEeecc
Confidence 45577 7799999999997 6678999999 5778899999999887764
No 459
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=29.79 E-value=1.3e+02 Score=28.89 Aligned_cols=72 Identities=13% Similarity=0.149 Sum_probs=45.8
Q ss_pred hhhhhccHHHHhhhcCCcEEEEecccc---------ccCCCcCCccHHHHHHHHHHCCCeEEEEcCCCCCc-hHHHHHHH
Q 016204 14 LFQTLNGLRHIAETRRFKAWLLDQFGV---------LHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRA-STTIDKLK 83 (393)
Q Consensus 14 ~~~~~~~~~~~~~~~~~k~i~~DlDGt---------L~~g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~-~~~~~~l~ 83 (393)
+...++.+++.== .+++|.+|++=+ ..-+.+.+|...+.+++|+++|+++++..+..-.. ....+.+.
T Consensus 31 v~~~~~~~r~~~i--P~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~ 108 (317)
T cd06599 31 LLEFIDKCREHDI--PCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELK 108 (317)
T ss_pred HHHHHHHHHHcCC--CeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHH
Confidence 3444444443321 578999985422 11134678999999999999999999888765332 24445555
Q ss_pred hCCC
Q 016204 84 SLGF 87 (393)
Q Consensus 84 ~lG~ 87 (393)
+.|+
T Consensus 109 ~~g~ 112 (317)
T cd06599 109 EAGA 112 (317)
T ss_pred HCCc
Confidence 5554
No 460
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=29.69 E-value=61 Score=28.11 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=22.1
Q ss_pred CccHHHHHHHHHHCCCeEEEEcCCCCC
Q 016204 48 YPGAISTLEMLATTGAKMVVISNSSRR 74 (393)
Q Consensus 48 ipga~eal~~L~~~G~~v~~~TN~~~~ 74 (393)
.+...++++.++++|.+++.+|++...
T Consensus 88 t~~~i~~~~~ak~~g~~iI~IT~~~~s 114 (179)
T cd05005 88 TSSVVNAAEKAKKAGAKVVLITSNPDS 114 (179)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 456888999999999999999986543
No 461
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=29.67 E-value=1.9e+02 Score=24.70 Aligned_cols=14 Identities=7% Similarity=-0.028 Sum_probs=11.3
Q ss_pred cCCcEEEEeccccc
Q 016204 28 RRFKAWLLDQFGVL 41 (393)
Q Consensus 28 ~~~k~i~~DlDGtL 41 (393)
.+|+.+++|.=+.+
T Consensus 91 ~~~d~viiDtpp~~ 104 (179)
T cd03110 91 EGAELIIIDGPPGI 104 (179)
T ss_pred cCCCEEEEECcCCC
Confidence 38999999987654
No 462
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=29.47 E-value=5.6e+02 Score=25.29 Aligned_cols=58 Identities=21% Similarity=0.201 Sum_probs=37.7
Q ss_pred EEEeccccccCCCc-CC------ccHHHHHHHHHHCCCeEEEEcCCCCCc-hH---HHHHHHhCCCCCc
Q 016204 33 WLLDQFGVLHDGKK-PY------PGAISTLEMLATTGAKMVVISNSSRRA-ST---TIDKLKSLGFDPS 90 (393)
Q Consensus 33 i~~DlDGtL~~g~~-~i------pga~eal~~L~~~G~~v~~~TN~~~~~-~~---~~~~l~~lG~~~~ 90 (393)
++-|-|.+|++++. .+ --+...|..++++|+++.+.---+|+. +. .+..|.+.|++..
T Consensus 163 ~I~dg~~ILThcnsg~Lat~~g~gtal~~i~~a~~~gk~f~V~v~EsRP~~qG~rlta~eL~~~GIpvt 231 (363)
T PRK05772 163 KLNDGDTVLTQCNAGGLATGTGLGTALAPVKLAKALGMSVSVIAPETRPWLQGSRLTVYELMEEGIKVT 231 (363)
T ss_pred hcCCCCEEEEecCCcchhhccccccHHHHHHHHHHCCCeEEEEECCCCccchhHHHHHHHHHHCCCCEE
Confidence 34466667887754 22 226777899999999885555445654 32 2567888998633
No 463
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=29.44 E-value=25 Score=29.11 Aligned_cols=40 Identities=33% Similarity=0.539 Sum_probs=32.3
Q ss_pred ccHHHHHHHHHHC---CCeEEEEcCCCCCchHHHHHHHhCCCC
Q 016204 49 PGAISTLEMLATT---GAKMVVISNSSRRASTTIDKLKSLGFD 88 (393)
Q Consensus 49 pga~eal~~L~~~---G~~v~~~TN~~~~~~~~~~~l~~lG~~ 88 (393)
|...+.+..+.+. ++++.+.||.+....+.++.+.+.|..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~l~~l~~~~~~ 102 (166)
T PF04055_consen 60 PDFIELLELLRKIKKRGIRISINTNGTLLDEELLDELKKLGVD 102 (166)
T ss_dssp CHHHHHHHHHHHCTCTTEEEEEEEESTTHCHHHHHHHHHTTCS
T ss_pred hhHHHHHHHHHHhhccccceeeeccccchhHHHHHHHHhcCcc
Confidence 6677888888776 999999998877667888888888853
No 464
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=29.12 E-value=83 Score=33.81 Aligned_cols=52 Identities=13% Similarity=0.077 Sum_probs=33.7
Q ss_pred CCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCcccCCCCcccc--CChhHHHHHHH
Q 016204 323 ACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATELGLDSYGEV--ADLSSVQTLVS 378 (393)
Q Consensus 323 ~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~~~~~~~~~i--~~~~~l~~~l~ 378 (393)
...+.|+||. .||..+.+.|++... +.+|. ......++.++ ++|..+...++
T Consensus 508 g~~VamvGDG-~NDapAL~~AdvGiA-m~~gt--~~akeaadivLldd~~s~Iv~av~ 561 (675)
T TIGR01497 508 GKLVAMTGDG-TNDAPALAQADVGVA-MNSGT--QAAKEAANMVDLDSDPTKLIEVVH 561 (675)
T ss_pred CCeEEEECCC-cchHHHHHhCCEeEE-eCCCC--HHHHHhCCEEECCCCHHHHHHHHH
Confidence 3479999999 799999999987643 33432 22222344443 36777766554
No 465
>PRK13937 phosphoheptose isomerase; Provisional
Probab=29.08 E-value=62 Score=28.51 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=17.9
Q ss_pred CCccHHHHHHHHHHCCCeEEEEcCCC
Q 016204 47 PYPGAISTLEMLATTGAKMVVISNSS 72 (393)
Q Consensus 47 ~ipga~eal~~L~~~G~~v~~~TN~~ 72 (393)
--+...++++.++++|.+++.+|++.
T Consensus 118 ~t~~~~~~~~~ak~~g~~~I~iT~~~ 143 (188)
T PRK13937 118 NSPNVLAALEKARELGMKTIGLTGRD 143 (188)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 34567777777777777777777654
No 466
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=28.97 E-value=1.1e+02 Score=34.76 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=30.9
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCc
Q 016204 51 AISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPS 90 (393)
Q Consensus 51 a~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~ 90 (393)
--..|-+|++.|++|.|.|-.-|...-+.++|...|++-.
T Consensus 688 LDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQ 727 (1373)
T KOG0384|consen 688 LDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQ 727 (1373)
T ss_pred HHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcce
Confidence 3468889999999999999655555666778877888733
No 467
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=28.91 E-value=30 Score=30.14 Aligned_cols=72 Identities=14% Similarity=-0.014 Sum_probs=35.9
Q ss_pred ccccccCCCcCC-ccHHHHHHHHHHCCCeEEEEc-CCCCC-c-hHHHHHHHh----CCC-CCcccceEEeCchhHHHHHH
Q 016204 37 QFGVLHDGKKPY-PGAISTLEMLATTGAKMVVIS-NSSRR-A-STTIDKLKS----LGF-DPSLFAGAITSGELTHQYLL 107 (393)
Q Consensus 37 lDGtL~~g~~~i-pga~eal~~L~~~G~~v~~~T-N~~~~-~-~~~~~~l~~----lG~-~~~~~~~iits~~~~~~~l~ 107 (393)
.|=||+-.+..- +.+.+..++|.++|++++.+| |.... . ...+..+-. .|+ +....+.+..|+..++.|+.
T Consensus 82 ~DRVllfs~~~~~~e~~~~a~~L~~~gi~~v~Vs~~~~~~~~l~~~~~~~Idl~~~~~LvP~EdG~Rig~P~~~a~lyiY 161 (172)
T PF10740_consen 82 TDRVLLFSPFSTDEEAVALAKQLIEQGIPFVGVSPNKPDEEDLEDLADVHIDLKLPKPLVPTEDGDRIGFPHLMAALYIY 161 (172)
T ss_dssp T-EEEEEES-S--HHHHHHHHHHHHHT--EEEEE-SS---TTGGG-SSS-EE----S-SEE-TTS-EE---HHHHHHHHH
T ss_pred cceEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEEecCCCCCchhhhhhheeecccCCCcccCCCCCEecchHHHHHHHHH
Confidence 455555444444 478999999999999999999 43321 1 232222212 233 23334778888888888775
Q ss_pred c
Q 016204 108 R 108 (393)
Q Consensus 108 ~ 108 (393)
.
T Consensus 162 y 162 (172)
T PF10740_consen 162 Y 162 (172)
T ss_dssp H
T ss_pred H
Confidence 3
No 468
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism]
Probab=28.81 E-value=3.9e+02 Score=25.94 Aligned_cols=59 Identities=19% Similarity=0.090 Sum_probs=40.6
Q ss_pred cCCccHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCcccceEEeCchhHHHHHHcc
Q 016204 46 KPYPGAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLLRR 109 (393)
Q Consensus 46 ~~ipga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~~~~~iits~~~~~~~l~~~ 109 (393)
+.-..|+-..+.++..|+.++.+|----....+++.+.++|+. .+.-|..-.+.-+++.
T Consensus 12 ~ieeNak~~~~~a~~~gI~~~~vtK~~~g~~~iae~l~~~Gi~-----~iaesr~~n~~~lr~~ 70 (353)
T COG3457 12 KIEENAKVLQETAARYGIELYGVTKQFGGDPFIAEALLALGIE-----GIAESRIDNAIRLREA 70 (353)
T ss_pred HHHHhHHHHHHHHHHcCCEEEEEEeeccCChHHHHHHHhcCcc-----eeeehhHHHHHHHHHc
Confidence 3335577788888999999999996545556788889899984 3444444444445444
No 469
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=28.80 E-value=97 Score=30.15 Aligned_cols=44 Identities=11% Similarity=0.127 Sum_probs=36.0
Q ss_pred CCcEEEEecc-----ccccCCCcCCccHHHHHHHHHHCCCeEEEEcCCC
Q 016204 29 RFKAWLLDQF-----GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSS 72 (393)
Q Consensus 29 ~~k~i~~DlD-----GtL~~g~~~ipga~eal~~L~~~G~~v~~~TN~~ 72 (393)
-++++.+|+| +...-..+.+|...+.+++|+++|.++++.++..
T Consensus 39 P~D~i~lDidy~~~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~ 87 (332)
T cd06601 39 PLDGLHVDVDFQDNYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPV 87 (332)
T ss_pred CCceEEEcCchhcCCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCc
Confidence 5799999996 4444456778999999999999999998888644
No 470
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=28.64 E-value=4.2e+02 Score=29.48 Aligned_cols=69 Identities=20% Similarity=0.046 Sum_probs=37.9
Q ss_pred cccccCCCcHHHHHHHHHHhCCCCCcEEEEecCchhhHHHHHHcCCeEEEEcCCCCCcccCCCCccc--cCChhHHHHHH
Q 016204 300 EVRWMGKPDKIIYKSAMAMVGVDACDSIAVGDSLHHDIKGANAAGIQSVFIIGGIHATELGLDSYGE--VADLSSVQTLV 377 (393)
Q Consensus 300 ~~~~~gKP~p~~~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~~aG~~~i~v~~G~~~~~~~~~~~~~--i~~~~~l~~~l 377 (393)
+..+..| .+.++.+.+ ....+.||||. .||-.+...|.+. +.-|.++.-....++.+ -+++..+...+
T Consensus 768 ev~P~~K--~~~Ik~lq~----~~~~VaMVGDG-INDaPALA~AdVG---Iaig~gs~vAieaADIVLmrn~L~~v~~ai 837 (951)
T KOG0207|consen 768 EVLPEQK--AEKIKEIQK----NGGPVAMVGDG-INDAPALAQADVG---IAIGAGSDVAIEAADIVLMRNDLRDVPFAI 837 (951)
T ss_pred ccCchhh--HHHHHHHHh----cCCcEEEEeCC-CCccHHHHhhccc---eeeccccHHHHhhCCEEEEccchhhhHHHH
Confidence 3334444 335544443 33679999999 6999988777653 22222222222234444 34666666655
Q ss_pred H
Q 016204 378 S 378 (393)
Q Consensus 378 ~ 378 (393)
+
T Consensus 838 ~ 838 (951)
T KOG0207|consen 838 D 838 (951)
T ss_pred H
Confidence 4
No 471
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=28.46 E-value=1e+02 Score=29.73 Aligned_cols=44 Identities=20% Similarity=0.351 Sum_probs=31.5
Q ss_pred CCcCCccHHHHHHHHHHCCCeEEEEcCCCCCc--hHHHHHHHhCCC
Q 016204 44 GKKPYPGAISTLEMLATTGAKMVVISNSSRRA--STTIDKLKSLGF 87 (393)
Q Consensus 44 g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~--~~~~~~l~~lG~ 87 (393)
..+.+|..++.+++|+++|.++++..+..-.. ..+.+.+.+.|+
T Consensus 66 d~~~FPdp~~mi~~Lh~~G~~~~~~i~P~v~~~~~~~y~~~~~~g~ 111 (317)
T cd06594 66 DPERYPGLDELIEELKARGIRVLTYINPYLADDGPLYYEEAKDAGY 111 (317)
T ss_pred ChhhCCCHHHHHHHHHHCCCEEEEEecCceecCCchhHHHHHHCCe
Confidence 34578999999999999999999888765322 232345555554
No 472
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=28.33 E-value=1.2e+02 Score=26.03 Aligned_cols=63 Identities=21% Similarity=0.291 Sum_probs=44.1
Q ss_pred CCcEEEEeccccccCC--CcCCccHHHHHHHHHHC-C-CeEEEEcCCC--CCc---hHHHHHHH-hCCCCCcc
Q 016204 29 RFKAWLLDQFGVLHDG--KKPYPGAISTLEMLATT-G-AKMVVISNSS--RRA---STTIDKLK-SLGFDPSL 91 (393)
Q Consensus 29 ~~k~i~~DlDGtL~~g--~~~ipga~eal~~L~~~-G-~~v~~~TN~~--~~~---~~~~~~l~-~lG~~~~~ 91 (393)
.+|+++||=|.++.-- ...-|.-..-+++++.. | +.+.++||+. +.. .+.++.|+ +.|+++..
T Consensus 42 ~ikavVlDKDNcit~P~~~~Iwp~~l~~ie~~~~vygek~i~v~SNsaG~~~~D~d~s~Ak~le~k~gIpVlR 114 (190)
T KOG2961|consen 42 GIKAVVLDKDNCITAPYSLAIWPPLLPSIERCKAVYGEKDIAVFSNSAGLTEYDHDDSKAKALEAKIGIPVLR 114 (190)
T ss_pred CceEEEEcCCCeeeCCcccccCchhHHHHHHHHHHhCcccEEEEecCcCccccCCchHHHHHHHHhhCCceEe
Confidence 6999999999998763 33446677778888764 4 8999999964 232 24455554 57887654
No 473
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=28.04 E-value=1.5e+02 Score=29.11 Aligned_cols=87 Identities=16% Similarity=0.146 Sum_probs=56.5
Q ss_pred hccHHHHhhhcCCcEEEEeccccccCCC---cCCccHHHHHHHHHHCCCeEEEEcCCCCCc------hHHHHHHHhCCCC
Q 016204 18 LNGLRHIAETRRFKAWLLDQFGVLHDGK---KPYPGAISTLEMLATTGAKMVVISNSSRRA------STTIDKLKSLGFD 88 (393)
Q Consensus 18 ~~~~~~~~~~~~~k~i~~DlDGtL~~g~---~~ipga~eal~~L~~~G~~v~~~TN~~~~~------~~~~~~l~~lG~~ 88 (393)
++.++..++- ..++|.+=...+=.+.. -..+...|+++.+++.|+++++++|..-.. ..+.+.|.++|.
T Consensus 16 l~~l~~ai~~-GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~Gv- 93 (347)
T COG0826 16 LEDLKAAIAA-GADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVELGV- 93 (347)
T ss_pred HHHHHHHHHc-CCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHcCC-
Confidence 4444444441 24566665442222222 233569999999999999999999964221 245666777777
Q ss_pred CcccceEEeCchhHHHHHHccc
Q 016204 89 PSLFAGAITSGELTHQYLLRRD 110 (393)
Q Consensus 89 ~~~~~~iits~~~~~~~l~~~~ 110 (393)
+.|+-+-..+..++++..
T Consensus 94 ----Daviv~Dpg~i~l~~e~~ 111 (347)
T COG0826 94 ----DAVIVADPGLIMLARERG 111 (347)
T ss_pred ----CEEEEcCHHHHHHHHHhC
Confidence 677888888888887765
No 474
>PRK10658 putative alpha-glucosidase; Provisional
Probab=28.02 E-value=1.3e+02 Score=32.34 Aligned_cols=59 Identities=20% Similarity=0.282 Sum_probs=41.7
Q ss_pred CCcEEEEecc-------ccccCCCcCCccHHHHHHHHHHCCCeEEEEcCCCCCc-hHHHHHHHhCCC
Q 016204 29 RFKAWLLDQF-------GVLHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRA-STTIDKLKSLGF 87 (393)
Q Consensus 29 ~~k~i~~DlD-------GtL~~g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~-~~~~~~l~~lG~ 87 (393)
..++|.+|++ +...=+.+.+|.-.+.+++|+++|+++++..|..-.. ....+...+.|+
T Consensus 298 P~d~i~lD~~w~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~~s~~f~e~~~~gy 364 (665)
T PRK10658 298 PLHVFHFDCFWMKEFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIAQKSPLFKEGKEKGY 364 (665)
T ss_pred CceEEEEchhhhcCCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcCCCchHHHHHHHCCe
Confidence 4689999985 2332245678999999999999999999998865332 233444555565
No 475
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2NYT_D.
Probab=27.97 E-value=62 Score=22.58 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=15.7
Q ss_pred ccHHHHHHHHHHCCCeEEEEc
Q 016204 49 PGAISTLEMLATTGAKMVVIS 69 (393)
Q Consensus 49 pga~eal~~L~~~G~~v~~~T 69 (393)
|.-.++|+.|.+.|.+|-+.|
T Consensus 2 ~~~qegLr~L~~aG~~v~iM~ 22 (55)
T PF05240_consen 2 PDYQEGLRRLCQAGAQVSIMT 22 (55)
T ss_dssp HHHHHHHHHHHHTT-EEEE--
T ss_pred cHHHHHHHHHHHCCCeEEecC
Confidence 456799999999999999988
No 476
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=27.87 E-value=93 Score=28.17 Aligned_cols=52 Identities=25% Similarity=0.347 Sum_probs=33.5
Q ss_pred hccHHHHhhhcCCcEEEEeccccccCCCcCCccHHHHHHHHHHCCCeEEEEcC
Q 016204 18 LNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISN 70 (393)
Q Consensus 18 ~~~~~~~~~~~~~k~i~~DlDGtL~~g~~~ipga~eal~~L~~~G~~v~~~TN 70 (393)
...++++..-.++++|++++|+-=. +........++|+++++.||+++-.-+
T Consensus 35 ~~~l~~a~~d~~ik~vvL~~~s~gg-~~~~~~el~~~i~~~~~~~kpVia~~~ 86 (222)
T cd07018 35 LEALEKAAEDDRIKGIVLDLDGLSG-GLAKLEELRQALERFRASGKPVIAYAD 86 (222)
T ss_pred HHHHHHHhcCCCeEEEEEECCCCCC-CHHHHHHHHHHHHHHHHhCCeEEEEeC
Confidence 3344455543368999999987322 223334567788888888899866554
No 477
>PRK07475 hypothetical protein; Provisional
Probab=27.70 E-value=1.8e+02 Score=26.82 Aligned_cols=72 Identities=17% Similarity=0.211 Sum_probs=44.0
Q ss_pred chhhhhccHHHHhhhcCCcEEEEeccccccC---------CCcCCccHHHHHHHHHHC---CCeEEEEcCCCCCchHHHH
Q 016204 13 HLFQTLNGLRHIAETRRFKAWLLDQFGVLHD---------GKKPYPGAISTLEMLATT---GAKMVVISNSSRRASTTID 80 (393)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~k~i~~DlDGtL~~---------g~~~ipga~eal~~L~~~---G~~v~~~TN~~~~~~~~~~ 80 (393)
.+..-.+..+.|.+ ...+.+++-+ ||++. +-..+..+.+.+..+++. ++++.++| +..+.-+.+
T Consensus 63 ~~~~l~~aa~~L~~-~G~d~I~~~C-gt~~~~~~~l~~~~~VPv~~ss~~~v~~l~~~~~~~~kIGILt--t~~t~l~~~ 138 (245)
T PRK07475 63 LLDAFVAAARELEA-EGVRAITTSC-GFLALFQRELAAALGVPVATSSLLQVPLIQALLPAGQKVGILT--ADASSLTPA 138 (245)
T ss_pred HHHHHHHHHHHHHH-cCCCEEEech-HHHHHHHHHHHHHcCCCEeccHHHHHHHHHHhccCCCeEEEEe--CCchhhhHH
Confidence 34444445455444 3578999988 87643 223344566666666654 68898888 443334456
Q ss_pred HHHhCCCC
Q 016204 81 KLKSLGFD 88 (393)
Q Consensus 81 ~l~~lG~~ 88 (393)
.|.+.|++
T Consensus 139 ~l~~~Gi~ 146 (245)
T PRK07475 139 HLLAVGVP 146 (245)
T ss_pred HHHhCCCC
Confidence 67788885
No 478
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=27.57 E-value=3.7e+02 Score=24.78 Aligned_cols=75 Identities=17% Similarity=0.150 Sum_probs=49.1
Q ss_pred CCcEEEEeccccccCCCcCCccHHHHHHHHHHC-CCeEEEEcCCCCCchHHHHHHHhCCCCCcccceEEeCchhHHHHHH
Q 016204 29 RFKAWLLDQFGVLHDGKKPYPGAISTLEMLATT-GAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGELTHQYLL 107 (393)
Q Consensus 29 ~~k~i~~DlDGtL~~g~~~ipga~eal~~L~~~-G~~v~~~TN~~~~~~~~~~~l~~lG~~~~~~~~iits~~~~~~~l~ 107 (393)
.|.++++- -|-.-+|.-++..-.+.|++|+++ |..+-.-+ +---++.+++|..-+.++.. -.++.-+.+..+-..
T Consensus 55 Gy~g~llS-GGm~srg~VPl~kf~d~lK~lke~~~l~inaHv--GfvdE~~~eklk~~~vdvvs-LDfvgDn~vIk~vy~ 130 (275)
T COG1856 55 GYEGCLLS-GGMDSRGKVPLWKFKDELKALKERTGLLINAHV--GFVDESDLEKLKEELVDVVS-LDFVGDNDVIKRVYK 130 (275)
T ss_pred CceeEEEe-CCcCCCCCccHHHHHHHHHHHHHhhCeEEEEEe--eeccHHHHHHHHHhcCcEEE-EeecCChHHHHHHHc
Confidence 45666552 344556677888889999999986 54444444 43337888899887777665 566666666555443
No 479
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=27.45 E-value=8.1 Score=31.00 Aligned_cols=37 Identities=24% Similarity=0.395 Sum_probs=23.0
Q ss_pred ccccCCCcCC-----ccHHHHHHHHHHCC--CeEEEEcCCCCCc
Q 016204 39 GVLHDGKKPY-----PGAISTLEMLATTG--AKMVVISNSSRRA 75 (393)
Q Consensus 39 GtL~~g~~~i-----pga~eal~~L~~~G--~~v~~~TN~~~~~ 75 (393)
++.+.|++|. +...+.++++++.+ +.+.+.||.....
T Consensus 50 ~v~~~GGEPll~~~~~~l~~~i~~~~~~~~~~~i~i~TNg~~~~ 93 (119)
T PF13394_consen 50 TVVFTGGEPLLYLNPEDLIELIEYLKERGPEIKIRIETNGTLPT 93 (119)
T ss_dssp EEEEESSSGGGSTTHHHHHHHHCTSTT-----EEEEEE-STTHH
T ss_pred EEEEECCCCccccCHHHHHHHHHHHHhhCCCceEEEEeCCeecc
Confidence 3455566666 34678888888888 9999999866554
No 480
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=27.38 E-value=1.2e+02 Score=33.08 Aligned_cols=61 Identities=18% Similarity=0.242 Sum_probs=46.1
Q ss_pred CCcEEEEecc-cc-----ccCCCcCCccHHHHHHHHHHCCCeEEEEcCCCCCc-hHHHHHHHhCCCCC
Q 016204 29 RFKAWLLDQF-GV-----LHDGKKPYPGAISTLEMLATTGAKMVVISNSSRRA-STTIDKLKSLGFDP 89 (393)
Q Consensus 29 ~~k~i~~DlD-Gt-----L~~g~~~ipga~eal~~L~~~G~~v~~~TN~~~~~-~~~~~~l~~lG~~~ 89 (393)
-.+.|.||+| .. ..=...-+|..++.+++|+++|++++..-|..-.. ..+.+.+.+.|+-.
T Consensus 295 P~d~~~lD~~~~~~~~~~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~ 362 (772)
T COG1501 295 PLDVFVLDIDFWMDNWGDFTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFV 362 (772)
T ss_pred cceEEEEeehhhhccccceEECcccCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEE
Confidence 4689999998 22 11145678999999999999999999999876444 36666777777643
No 481
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=27.34 E-value=37 Score=29.08 Aligned_cols=17 Identities=12% Similarity=0.088 Sum_probs=14.5
Q ss_pred cEEEEecCCccccCHHH
Q 016204 234 DLILFDLKNFNLVSVDI 250 (393)
Q Consensus 234 k~iiFD~DGTL~ds~~~ 250 (393)
+.+++|+|.||+.|...
T Consensus 7 l~LVLDLDeTLihs~~~ 23 (156)
T TIGR02250 7 LHLVLDLDQTLIHTTKD 23 (156)
T ss_pred eEEEEeCCCCccccccc
Confidence 57899999999998654
No 482
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=27.21 E-value=1.1e+02 Score=29.83 Aligned_cols=80 Identities=19% Similarity=0.219 Sum_probs=47.4
Q ss_pred ccccCCCchhhhhccHHHHhhhcCCcEEEEeccccc---cC---CC-cCCccHHHHHHHHHHCCCeEEEEcCCCC----C
Q 016204 6 SVQSNDPHLFQTLNGLRHIAETRRFKAWLLDQFGVL---HD---GK-KPYPGAISTLEMLATTGAKMVVISNSSR----R 74 (393)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~DlDGtL---~~---g~-~~ipga~eal~~L~~~G~~v~~~TN~~~----~ 74 (393)
..+||...+ +-+-++.|.+. .++.|-+.+||.- ++ |. ..+..+.++++.|++.|+++.+.+.-++ .
T Consensus 85 ~l~TNG~ll--~~e~~~~L~~~-g~~~v~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~~v~v~~vv~~~N~~~ 161 (358)
T TIGR02109 85 NLITSGVGL--TEARLDALADA-GLDHVQLSFQGVDEALADRIAGYKNAFEQKLAMARAVKAAGLPLTLNFVIHRHNIDQ 161 (358)
T ss_pred EEEeCCccC--CHHHHHHHHhC-CCCEEEEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhCCCceEEEEEeccCCHHH
Confidence 345554332 22333444441 4678999999972 22 32 3456788999999999988765442122 2
Q ss_pred chHHHHHHHhCCCC
Q 016204 75 ASTTIDKLKSLGFD 88 (393)
Q Consensus 75 ~~~~~~~l~~lG~~ 88 (393)
..++.+.+.++|++
T Consensus 162 l~~~~~~~~~lg~~ 175 (358)
T TIGR02109 162 IPEIIELAIELGAD 175 (358)
T ss_pred HHHHHHHHHHcCCC
Confidence 23556666777764
No 483
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=27.07 E-value=90 Score=30.41 Aligned_cols=44 Identities=16% Similarity=0.143 Sum_probs=34.4
Q ss_pred CCcEEEEecc-----ccccCCCcCCccH--HHHHHHHHHCCCeEEEEcCCC
Q 016204 29 RFKAWLLDQF-----GVLHDGKKPYPGA--ISTLEMLATTGAKMVVISNSS 72 (393)
Q Consensus 29 ~~k~i~~DlD-----GtL~~g~~~ipga--~eal~~L~~~G~~v~~~TN~~ 72 (393)
.++.+.+|+| |...=..+.+|.- .+.+++|+++|+++++..+..
T Consensus 39 P~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~ 89 (339)
T cd06602 39 PLDVQWNDIDYMDRRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPA 89 (339)
T ss_pred CcceEEECcccccCccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCc
Confidence 5789999976 3332345578888 999999999999999888754
No 484
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=27.04 E-value=1.4e+02 Score=25.16 Aligned_cols=40 Identities=25% Similarity=0.408 Sum_probs=32.1
Q ss_pred ccHHHHHHHHHHC--CCeEEEEcCCCCCchHHHHHHHhCCCC
Q 016204 49 PGAISTLEMLATT--GAKMVVISNSSRRASTTIDKLKSLGFD 88 (393)
Q Consensus 49 pga~eal~~L~~~--G~~v~~~TN~~~~~~~~~~~l~~lG~~ 88 (393)
+...+.++++++. +.++.+.||......+.++.|.+.|+.
T Consensus 59 ~~~~~~i~~~~~~~~~~~~~i~T~~~~~~~~~~~~l~~~g~~ 100 (204)
T cd01335 59 PELAELLRRLKKELPGFEISIETNGTLLTEELLKELKELGLD 100 (204)
T ss_pred HhHHHHHHHHHhhCCCceEEEEcCcccCCHHHHHHHHhCCCc
Confidence 3788999999998 899999998766566777888777663
No 485
>PRK14556 pyrH uridylate kinase; Provisional
Probab=27.02 E-value=2.4e+02 Score=26.24 Aligned_cols=41 Identities=20% Similarity=0.241 Sum_probs=25.2
Q ss_pred CCcEEEE--eccccccCCCcCCccH--------------------HHHHHHHHHCCCeEEEEc
Q 016204 29 RFKAWLL--DQFGVLHDGKKPYPGA--------------------ISTLEMLATTGAKMVVIS 69 (393)
Q Consensus 29 ~~k~i~~--DlDGtL~~g~~~ipga--------------------~eal~~L~~~G~~v~~~T 69 (393)
+-+.+++ |+||+.....+..|+| ..|++.+++.|++++++.
T Consensus 164 ~Ad~Lii~TdVDGVYd~DP~~~p~A~~i~~I~~~e~~~~~l~vmd~~A~~~a~~~gIpi~I~n 226 (249)
T PRK14556 164 GADALLKATTVNGVYDKDPNKYSDAKRFDKVTFSEVVSKELNVMDLGAFTQCRDFGIPIYVFD 226 (249)
T ss_pred CCCEEEEEeCCCccCCCCCCCCCCceEeeEEchhhhcccchHhHHHHHHHHHHHCCCcEEEEC
Confidence 4555554 9999776555444443 245666667777776665
No 486
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=26.90 E-value=36 Score=31.07 Aligned_cols=44 Identities=11% Similarity=0.121 Sum_probs=26.6
Q ss_pred cCCCcHHHHHHHHHHhC-CCCCc-EEEEecCchhhHHHHHHcCCeEEEEc
Q 016204 304 MGKPDKIIYKSAMAMVG-VDACD-SIAVGDSLHHDIKGANAAGIQSVFII 351 (393)
Q Consensus 304 ~gKP~p~~~~~~~~~lg-i~~~~-~v~VGDsl~~Di~~a~~aG~~~i~v~ 351 (393)
.||-. ....+++.+. ....+ ++.+||+ .||+.+... +...+.|.
T Consensus 190 ~gKg~--Aa~~ll~~y~rl~~~r~t~~~GDg-~nD~Pl~ev-~d~AfiV~ 235 (274)
T COG3769 190 AGKGQ--AANWLLETYRRLGGARTTLGLGDG-PNDAPLLEV-MDYAFIVK 235 (274)
T ss_pred cCccH--HHHHHHHHHHhcCceeEEEecCCC-CCcccHHHh-hhhheeec
Confidence 35533 4455554432 23344 9999999 799998854 45555554
No 487
>PF06434 Aconitase_2_N: Aconitate hydratase 2 N-terminus; InterPro: IPR015929 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal region of bacterial aconitase B (AcnB), which consists of both a HEAT-like domain and a 'swivel' domain. HEAT-like domains are usually implicated in protein-protein interactions, while the 'swivel' domain is usually a mobile unit in proteins that carry it. In AcnB, this N-terminal region was shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=26.76 E-value=49 Score=29.38 Aligned_cols=41 Identities=27% Similarity=0.466 Sum_probs=24.7
Q ss_pred cCCccHHHHHHHHHHCCCeEEEE-----cCCCCCchHHHHHHHhCCC
Q 016204 46 KPYPGAISTLEMLATTGAKMVVI-----SNSSRRASTTIDKLKSLGF 87 (393)
Q Consensus 46 ~~ipga~eal~~L~~~G~~v~~~-----TN~~~~~~~~~~~l~~lG~ 87 (393)
...++..+.|++|+++|++++++ |++||.+... .-|.-+|-
T Consensus 37 ~~~~~~l~~i~~lk~kg~~la~vGdvvGtGSSRKSa~N-SvlW~~G~ 82 (204)
T PF06434_consen 37 NRRPGPLEQIEELKEKGHPLAYVGDVVGTGSSRKSATN-SVLWHMGE 82 (204)
T ss_dssp S-BTTSHHHHHHHHTTSS-EEEEEEEEEES---THHHH-HHHHHHSE
T ss_pred cccccHHHHHHHHHHcCCcEEEecCccccCcccchhhh-hhhhhccC
Confidence 34567899999999999999766 6667766422 22444553
No 488
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=26.68 E-value=1.4e+02 Score=25.87 Aligned_cols=50 Identities=18% Similarity=0.141 Sum_probs=31.0
Q ss_pred cHHHHhhhcCCcEEEEecccc------ccCCCcCCc-cHHHHHHHHHHCCCeEEEEc
Q 016204 20 GLRHIAETRRFKAWLLDQFGV------LHDGKKPYP-GAISTLEMLATTGAKMVVIS 69 (393)
Q Consensus 20 ~~~~~~~~~~~k~i~~DlDGt------L~~g~~~ip-ga~eal~~L~~~G~~v~~~T 69 (393)
.++++++.+..+.+.+|+||. ++......+ ...++++.|++.|+++.+.|
T Consensus 104 ~l~~l~~~g~~~~v~isl~~~~~~~~~~~g~~~~~~~~~~~~i~~l~~~gi~~~i~~ 160 (191)
T TIGR02495 104 VLEELLEEGLVDYVAMDVKAPPEKYPELYGLEKNGSNNILKSLEILLRSGIPFELRT 160 (191)
T ss_pred HHHHHHhcCCCcEEEEeccCChHHHHHHHCCCCchHHHHHHHHHHHHHcCCCEEEEE
Confidence 344555432356788999974 111122233 67888999999988776654
No 489
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=26.61 E-value=83 Score=25.20 Aligned_cols=48 Identities=27% Similarity=0.128 Sum_probs=32.5
Q ss_pred ccCCCcCCccHHHHHHHHHHCCCeEEEEcCCCC-Cc-hHHHHHHHhCCCC
Q 016204 41 LHDGKKPYPGAISTLEMLATTGAKMVVISNSSR-RA-STTIDKLKSLGFD 88 (393)
Q Consensus 41 L~~g~~~ipga~eal~~L~~~G~~v~~~TN~~~-~~-~~~~~~l~~lG~~ 88 (393)
-.+.++.+-|..++++.+++...+++|+.++.. .+ ..+...-...+++
T Consensus 20 a~raGKlv~G~~~vlkalk~gkaklViiA~D~~~~~kkki~~~~~~~~Vp 69 (108)
T PTZ00106 20 VMKSGKYTLGTKSTLKALRNGKAKLVIISNNCPPIRRSEIEYYAMLSKTG 69 (108)
T ss_pred HHHhCCeeecHHHHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHhhcCCC
Confidence 345678889999999999987777777776543 33 3444444445665
No 490
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=26.58 E-value=1.4e+02 Score=20.92 Aligned_cols=38 Identities=13% Similarity=0.125 Sum_probs=26.5
Q ss_pred HHHHHHHHHHCCCeEEEEcCCC-CCc-hHHHHHHHhCCCC
Q 016204 51 AISTLEMLATTGAKMVVISNSS-RRA-STTIDKLKSLGFD 88 (393)
Q Consensus 51 a~eal~~L~~~G~~v~~~TN~~-~~~-~~~~~~l~~lG~~ 88 (393)
..+.++.++++|.+.+.+|+-. ... ....+..++.|+.
T Consensus 17 ~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~ 56 (67)
T smart00481 17 PEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIK 56 (67)
T ss_pred HHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCe
Confidence 6689999999999999999844 222 3444545555554
No 491
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=26.53 E-value=1.5e+02 Score=30.19 Aligned_cols=50 Identities=22% Similarity=0.145 Sum_probs=40.6
Q ss_pred cHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCCCcccceEEeCch
Q 016204 50 GAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFDPSLFAGAITSGE 100 (393)
Q Consensus 50 ga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~~~~~~~iits~~ 100 (393)
...|..+.+.+.|++|+++|...-+++-+.+.|.+.|++... .-++.|+.
T Consensus 103 ~~~eL~e~ai~n~krVIlISDMYlps~Il~~~L~s~g~d~~n-ipiY~S~e 152 (635)
T COG5610 103 KNIELVEEAIKNEKRVILISDMYLPSSILRTFLNSFGPDFNN-IPIYMSSE 152 (635)
T ss_pred cchHHHHHHHhCCCeEEEEecccCcHHHHHHHHHhcCCCccC-ceeeecce
Confidence 467899999999999999998777777777888899998765 55666653
No 492
>PF11576 DUF3236: Protein of unknown function (DUF3236); InterPro: IPR012019 This family of proteins with unknown function appears to be restricted to Methanobacteria. ; PDB: 3BRC_B.
Probab=26.43 E-value=44 Score=28.12 Aligned_cols=39 Identities=15% Similarity=0.268 Sum_probs=24.4
Q ss_pred cHHHHHHHHHHCCCeEEEEcCCCCCchHHHHHHHhCCCC
Q 016204 50 GAISTLEMLATTGAKMVVISNSSRRASTTIDKLKSLGFD 88 (393)
Q Consensus 50 ga~eal~~L~~~G~~v~~~TN~~~~~~~~~~~l~~lG~~ 88 (393)
+=.++|+.--.+.++++++|||......+.+.+.+++.+
T Consensus 23 EEv~~Ir~~I~nakkIvV~t~N~kKf~vi~~il~~~~~~ 61 (154)
T PF11576_consen 23 EEVEAIREYILNAKKIVVATNNEKKFKVINDILSKFNLP 61 (154)
T ss_dssp HHHHHHHHHHHH-S-EEE----HHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHhcCceEEEecCCchHhHHHHHHHHHhcCC
Confidence 346777777778899999999988877777888887765
No 493
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=25.99 E-value=1.9e+02 Score=24.79 Aligned_cols=28 Identities=7% Similarity=0.129 Sum_probs=19.1
Q ss_pred CCCeEEEEcCCCC-CchHHHHHHHhCCCC
Q 016204 61 TGAKMVVISNSSR-RASTTIDKLKSLGFD 88 (393)
Q Consensus 61 ~G~~v~~~TN~~~-~~~~~~~~l~~lG~~ 88 (393)
++.++++.-+++. .+......|..+|+.
T Consensus 115 ~d~~IVvYC~~G~~~S~~aa~~L~~~G~~ 143 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWNAAKRALAYGYS 143 (162)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhcCCc
Confidence 4567777776654 455667777888884
No 494
>PLN02382 probable sucrose-phosphatase
Probab=25.78 E-value=38 Score=34.05 Aligned_cols=13 Identities=23% Similarity=0.271 Sum_probs=11.0
Q ss_pred EEEEecCCccccC
Q 016204 235 LILFDLKNFNLVS 247 (393)
Q Consensus 235 ~iiFD~DGTL~ds 247 (393)
.|+-||||||+++
T Consensus 11 lI~sDLDGTLL~~ 23 (413)
T PLN02382 11 MIVSDLDHTMVDH 23 (413)
T ss_pred EEEEcCCCcCcCC
Confidence 4667999999987
No 495
>PRK06186 hypothetical protein; Validated
Probab=25.76 E-value=58 Score=29.91 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=27.1
Q ss_pred EEeccccccCC---CcCCccHHHHHHHHHHCCCeEE
Q 016204 34 LLDQFGVLHDG---KKPYPGAISTLEMLATTGAKMV 66 (393)
Q Consensus 34 ~~DlDGtL~~g---~~~ipga~eal~~L~~~G~~v~ 66 (393)
+-++||+|.-| .+=++|...|+++.|++++|+.
T Consensus 51 l~~~dgilvpgGfg~rg~~Gki~ai~~Are~~iP~L 86 (229)
T PRK06186 51 LAGFDGIWCVPGSPYRNDDGALTAIRFARENGIPFL 86 (229)
T ss_pred HhhCCeeEeCCCCCcccHhHHHHHHHHHHHcCCCeE
Confidence 44678888764 4667899999999999999974
No 496
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=25.16 E-value=4.1e+02 Score=25.56 Aligned_cols=51 Identities=20% Similarity=0.216 Sum_probs=31.3
Q ss_pred ccccccCCCcCC----ccHHHHHHHHHHCCC--eEEEEcC-----CCCCchHHHHHHHhCCC
Q 016204 37 QFGVLHDGKKPY----PGAISTLEMLATTGA--KMVVISN-----SSRRASTTIDKLKSLGF 87 (393)
Q Consensus 37 lDGtL~~g~~~i----pga~eal~~L~~~G~--~v~~~TN-----~~~~~~~~~~~l~~lG~ 87 (393)
+..|++.|+.++ +...+.+++|++.++ .+.+-|+ ..+.+.+.++.|.+.|.
T Consensus 137 I~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~ 198 (321)
T TIGR03822 137 IWEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGK 198 (321)
T ss_pred ccEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCC
Confidence 445666666654 245677888887763 2456563 23445677777877764
No 497
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=25.11 E-value=83 Score=30.74 Aligned_cols=42 Identities=24% Similarity=0.279 Sum_probs=33.8
Q ss_pred HHHHHHHhCCCCCcEEEEecCchhhHHHHH-HcCCeEEEEcCC
Q 016204 312 YKSAMAMVGVDACDSIAVGDSLHHDIKGAN-AAGIQSVFIIGG 353 (393)
Q Consensus 312 ~~~~~~~lgi~~~~~v~VGDsl~~Di~~a~-~aG~~~i~v~~G 353 (393)
+...++.-|+.-.++++|||.+..|+.... .+|++|-++...
T Consensus 335 l~~flelt~WrG~~VlYFGDHlySDLad~tlkhgWRTgAII~E 377 (510)
T KOG2470|consen 335 LKSFLELTGWRGPRVLYFGDHLYSDLADLTLKHGWRTGAIIPE 377 (510)
T ss_pred HHHHHHHhccCCCeeEEecCcchhhhhhhHhhcccccccchHH
Confidence 334566667878899999999999999877 999998777654
No 498
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=24.81 E-value=87 Score=27.37 Aligned_cols=43 Identities=19% Similarity=0.183 Sum_probs=28.4
Q ss_pred hhcCCcEEEEeccccccCCCcCCccHHHHHHHHHHCCCeEEEEc
Q 016204 26 ETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVIS 69 (393)
Q Consensus 26 ~~~~~k~i~~DlDGtL~~g~~~ipga~eal~~L~~~G~~v~~~T 69 (393)
-||+.+..+||= -|---+.+...-.+..|++|...|+.-+++|
T Consensus 156 lmmkpqvllfde-ptaaldpeitaqvv~iikel~~tgitqvivt 198 (242)
T COG4161 156 LMMEPQVLLFDE-PTAALDPEITAQIVSIIKELAETGITQVIVT 198 (242)
T ss_pred HhcCCcEEeecC-cccccCHHHHHHHHHHHHHHHhcCceEEEEE
Confidence 367788888873 2222233334457778888888888888888
No 499
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=24.70 E-value=95 Score=32.79 Aligned_cols=55 Identities=16% Similarity=0.195 Sum_probs=36.0
Q ss_pred hhccHHHHhhhcCCcEEEEeccccccCCCcCCccHHHHHHHHHHCCCeEEEEcCC
Q 016204 17 TLNGLRHIAETRRFKAWLLDQFGVLHDGKKPYPGAISTLEMLATTGAKMVVISNS 71 (393)
Q Consensus 17 ~~~~~~~~~~~~~~k~i~~DlDGtL~~g~~~ipga~eal~~L~~~G~~v~~~TN~ 71 (393)
.++.+++..+=.++++|++|+|+-=--+-..+....++|+++|+.||+|+...++
T Consensus 81 i~~~i~~A~~D~~IkgIvL~i~~~~g~~~~~~~ei~~ai~~fk~sgKpVvA~~~~ 135 (584)
T TIGR00705 81 IVNAIRQAADDRRIEGLVFDLSNFSGWDSPHLVEIGSALSEFKDSGKPVYAYGTN 135 (584)
T ss_pred HHHHHHHHhcCCCceEEEEEccCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 3334444444447999999999521011123456888999999999998876654
No 500
>PRK13938 phosphoheptose isomerase; Provisional
Probab=24.65 E-value=83 Score=28.09 Aligned_cols=27 Identities=11% Similarity=0.155 Sum_probs=20.3
Q ss_pred CCccHHHHHHHHHHCCCeEEEEcCCCC
Q 016204 47 PYPGAISTLEMLATTGAKMVVISNSSR 73 (393)
Q Consensus 47 ~ipga~eal~~L~~~G~~v~~~TN~~~ 73 (393)
--+...++++.++++|.+++.+|+++.
T Consensus 125 ~t~~vi~a~~~Ak~~G~~vI~iT~~~~ 151 (196)
T PRK13938 125 NSMSVLRAAKTARELGVTVVAMTGESG 151 (196)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 345678888888888888888887653
Done!