BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016206
         (393 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic
           Asymmetry Of Eukaryotic Cytosolic Chaperonins
 pdb|3P9D|K Chain K, The Crystal Structure Of Yeast Cct Reveals Intrinsic
           Asymmetry Of Eukaryotic Cytosolic Chaperonins
 pdb|3P9E|CC Chain c, The Crystal Structure Of Yeast Cct Reveals Intrinsic
           Asymmetry Of Eukaryotic Cytosolic Chaperonins
 pdb|3P9E|KK Chain k, The Crystal Structure Of Yeast Cct Reveals Intrinsic
           Asymmetry Of Eukaryotic Cytosolic Chaperonins
 pdb|4D8Q|C Chain C, Molecular Architecture Of The Eukaryotic Chaperonin
           TricCCT DERIVED By A Combination Of Chemical
           Crosslinking And Mass-Spectrometry, Xl- Ms
 pdb|4D8Q|K Chain K, Molecular Architecture Of The Eukaryotic Chaperonin
           TricCCT DERIVED By A Combination Of Chemical
           Crosslinking And Mass-Spectrometry, Xl- Ms
 pdb|4D8R|CC Chain c, Molecular Architecture Of The Eukaryotic Chaperonin
           TricCCT DERIVED By A Combination Of Chemical
           Crosslinking And Mass-Spectrometry, Xl- Ms
 pdb|4D8R|KK Chain k, Molecular Architecture Of The Eukaryotic Chaperonin
           TricCCT DERIVED By A Combination Of Chemical
           Crosslinking And Mass-Spectrometry, Xl- Ms
          Length = 590

 Score = 29.3 bits (64), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 2/33 (6%)

Query: 299 PQGSLVYWVTNSSFSIVQQLALKHPASRTMLGL 331
           P G LV  +TN   +I++++ + HPA+++ML L
Sbjct: 51  PMGGLV--LTNDGHAILREIDVAHPAAKSMLEL 81


>pdb|1XLY|A Chain A, X-Ray Structure Of The Rna-Binding Protein She2p
 pdb|1XLY|B Chain B, X-Ray Structure Of The Rna-Binding Protein She2p
          Length = 234

 Score = 28.9 bits (63), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 7/63 (11%)

Query: 84  TVNLSERVIESIAGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIA--LLPLI 141
           T +L + ++     E+ +L   ++++  DTY+ F  F  W I      +LRI   LL L 
Sbjct: 113 TQSLQKEILSKTLNEDLTLTAESILAIDDTYNHFVKFSQWMI-----ESLRIGSNLLDLE 167

Query: 142 VLQ 144
           V+Q
Sbjct: 168 VVQ 170


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.139    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,858,711
Number of Sequences: 62578
Number of extensions: 365229
Number of successful extensions: 948
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 947
Number of HSP's gapped (non-prelim): 3
length of query: 393
length of database: 14,973,337
effective HSP length: 101
effective length of query: 292
effective length of database: 8,652,959
effective search space: 2526664028
effective search space used: 2526664028
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)