Query 016206
Match_columns 393
No_of_seqs 176 out of 1169
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 04:46:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016206.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016206hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK02944 OxaA-like protein pre 100.0 1.1E-44 2.3E-49 348.3 19.0 205 104-331 41-251 (255)
2 PRK00145 putative inner membra 100.0 4.3E-44 9.3E-49 338.0 18.5 193 115-329 24-218 (223)
3 PF02096 60KD_IMP: 60Kd inner 100.0 5E-42 1.1E-46 317.7 16.0 188 121-323 2-196 (198)
4 TIGR03592 yidC_oxa1_cterm memb 100.0 1E-41 2.2E-46 312.4 16.4 179 121-322 1-181 (181)
5 PRK01622 OxaA-like protein pre 100.0 2.2E-41 4.7E-46 325.6 19.3 199 104-324 42-251 (256)
6 PRK02463 OxaA-like protein pre 100.0 2E-41 4.3E-46 332.6 18.9 212 103-337 41-267 (307)
7 PRK01318 membrane protein inse 100.0 5.9E-41 1.3E-45 349.8 17.1 204 97-326 297-510 (521)
8 PRK01001 putative inner membra 100.0 1.9E-39 4.2E-44 342.2 16.2 199 107-323 562-777 (795)
9 PRK03449 putative inner membra 100.0 1.4E-38 2.9E-43 311.7 19.5 217 98-321 3-267 (304)
10 COG0706 YidC Preprotein transl 100.0 2.2E-37 4.7E-42 306.1 18.8 205 100-327 88-300 (314)
11 PRK01315 putative inner membra 100.0 8.9E-37 1.9E-41 301.6 19.3 214 100-321 11-255 (329)
12 PRK02201 putative inner membra 100.0 7.3E-37 1.6E-41 304.6 18.2 208 105-323 110-341 (357)
13 PRK00247 putative inner membra 100.0 1.8E-34 3.9E-39 292.6 20.3 224 100-333 5-281 (429)
14 KOG1239 Inner membrane protein 100.0 1.3E-31 2.8E-36 269.6 17.6 220 96-337 76-304 (372)
15 PRK02654 putative inner membra 99.9 5.1E-27 1.1E-31 228.9 17.4 109 98-214 2-119 (375)
16 PF11421 Synthase_beta: ATP sy 63.8 7 0.00015 28.3 2.4 15 1-15 1-15 (49)
17 PF01956 DUF106: Integral memb 58.2 22 0.00048 31.9 5.4 96 118-214 11-114 (168)
18 KOG1239 Inner membrane protein 45.8 69 0.0015 33.0 7.3 149 189-337 4-153 (372)
19 COG1422 Predicted membrane pro 39.1 49 0.0011 31.1 4.5 41 121-163 45-86 (201)
20 PF12794 MscS_TM: Mechanosensi 37.3 4.4E+02 0.0095 26.6 11.5 39 189-229 79-117 (340)
21 PLN02294 cytochrome c oxidase 35.6 95 0.0021 28.6 5.6 58 3-64 2-61 (174)
22 COG1422 Predicted membrane pro 31.0 64 0.0014 30.4 3.9 65 147-214 77-146 (201)
23 PF10225 DUF2215: Uncharacteri 24.1 5.3E+02 0.011 24.9 9.1 70 121-191 150-225 (249)
24 PF15050 SCIMP: SCIMP protein 22.7 70 0.0015 27.8 2.4 34 124-157 14-47 (133)
No 1
>PRK02944 OxaA-like protein precursor; Validated
Probab=100.00 E-value=1.1e-44 Score=348.26 Aligned_cols=205 Identities=21% Similarity=0.331 Sum_probs=178.4
Q ss_pred HHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCc------ccHHHHHHH
Q 016206 104 VRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSG------KRFVDQISL 177 (393)
Q Consensus 104 v~~i~~lLe~iH~~tGlpWw~aIil~Ti~vRl~llPl~i~q~r~~~km~~l~Pel~~i~~k~~~~------k~~~e~~~L 177 (393)
+.++.++|+++|.++|.|||++|+++|+++|++++|++++|+|+++||+++|||++++++|++++ +.++|++++
T Consensus 41 ~~p~~~~l~~i~~~~g~~wg~aIi~~TiivR~illPl~~~q~~~~~km~~iqPe~~~iq~kyk~~~~~~~~k~~~e~~~L 120 (255)
T PRK02944 41 VYPLSQLITYFANLFGSNYGLAIIVVTLLIRLLILPLMIKQTKSTKAMQALQPEMQKLKEKYSSKDQATQQKLQQEMMQL 120 (255)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999987643 235688899
Q ss_pred HHHhchhCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCccccccccccCCCCCCcchhHHHHHHHHHHHHHHH
Q 016206 178 FRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNV 257 (393)
Q Consensus 178 ~kk~~~~~Gc~~~~~~llp~LiQiPifi~~f~aLR~ma~~~~p~l~~~g~LWf~DLt~~Dpg~~~~ILPil~~~l~~l~~ 257 (393)
|||| ||+|+.. .+|+++|+|||+++|+++|++. ++.++||+|| ||+.+|| +++||++++++++++.
T Consensus 121 yk~~----gvnP~~g-~lp~liQ~Pifi~lf~~i~~~~-----~l~~~~flW~-dLs~~Dp---~~iLPil~~~~~~~~~ 186 (255)
T PRK02944 121 FQKN----GVNPLAG-CLPIFIQMPILIAFYHAIMRTS-----EISKHSFLWF-DLGQADP---YYILPIVAGITTFIQQ 186 (255)
T ss_pred HHHc----CCCchHH-HHHHHHHHHHHHHHHHHHHhhH-----HHhhcCCCcc-ccCcchH---HHHHHHHHHHHHHHHH
Confidence 9998 6777754 4899999999999999999985 6788999999 9999999 8999999999999998
Q ss_pred HHhcCcccCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHHHHHHHHHHccHHHHhHhCC
Q 016206 258 QLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGL 331 (393)
Q Consensus 258 ~~~~~~~~~~~~~g~~~~~~k~~k~~l~i~~lp~~~~~~~~Paal~LYWitS~~fsl~Q~~~lr~p~vRk~lgl 331 (393)
+.+.... +++ ...++.+++++|+.+++++.++|+|+++||++||+|+++|++++++|.+|+..+=
T Consensus 187 ~~~~~~~---~~~------~~~~~~m~~i~p~~~~~~~~~~Pagl~lYw~~s~~~~i~Q~~~l~~~~~~~~~~~ 251 (255)
T PRK02944 187 KLMMAGT---AGQ------NPQMAMMLWLMPIMILIFAINFPAALSLYWVVGNIFMIAQTYLIKGPEIKASKAG 251 (255)
T ss_pred HhcccCC---CCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccchhhcC
Confidence 8754321 111 1234667888999999999999999999999999999999999999999986653
No 2
>PRK00145 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=4.3e-44 Score=338.02 Aligned_cols=193 Identities=19% Similarity=0.273 Sum_probs=168.4
Q ss_pred hhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCc--ccHHHHHHHHHHhchhCCCCchhH
Q 016206 115 HDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSG--KRFVDQISLFRREKRAAGCPSLLW 192 (393)
Q Consensus 115 H~~tGlpWw~aIil~Ti~vRl~llPl~i~q~r~~~km~~l~Pel~~i~~k~~~~--k~~~e~~~L~kk~~~~~Gc~~~~~ 192 (393)
|..+|+|||++|+++|+++|++++|++++|+|+++||++++||++++++|++++ +.++|++++|||+ ||+|+..
T Consensus 24 ~~~~g~~w~~sIi~~tiivR~~l~Pl~~~q~~~~~km~~iqP~~~~i~~k~k~d~~~~~~e~~~Lyk~~----~inp~~~ 99 (223)
T PRK00145 24 ISNPNFSYGIAIILVTLIIRLLILPLNIKQTKSSLRMNEIQPEIKKLQAKYKNDPQKLQQEMMKLYKEK----GVNPLGG 99 (223)
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHHHHHHHHHHHHh----CCCchHH
Confidence 334689999999999999999999999999999999999999999999987765 3467899999998 6777754
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCCCccccccccccCCCCCCcchhHHHHHHHHHHHHHHHHHhcCcccCCccchh
Q 016206 193 FIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGL 272 (393)
Q Consensus 193 ~llp~LiQiPifi~~f~aLR~ma~~~~p~l~~~g~LWf~DLt~~Dpg~~~~ILPil~~~l~~l~~~~~~~~~~~~~~~g~ 272 (393)
.+|+++|+|+|+++|+++|+++ ++.++|++||+||+.+|| +++||++++++++++.+++.+. +. .
T Consensus 100 -~lp~liQiPif~~l~~~i~~~~-----~~~~~~flW~~dLt~~Dp---~~iLPil~~~~~~l~~~~~~~~---~~---~ 164 (223)
T PRK00145 100 -CLPLLIQWPILIALYYVFNNLT-----GINGVSFLWIKDLAKPDI---TWILPILSGATTYLSGYLMTKA---DS---S 164 (223)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhh-----hccCCCccChhhccCcch---HHHHHHHHHHHHHHHHHHcCCC---Ch---h
Confidence 4888999999999999999996 688899999999999999 8999999999999999876543 11 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHHHHHHHHHHccHHHHhHh
Q 016206 273 LGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRTML 329 (393)
Q Consensus 273 ~~~~~k~~k~~l~i~~lp~~~~~~~~Paal~LYWitS~~fsl~Q~~~lr~p~vRk~l 329 (393)
..+.+|.+++++++.++++++++|+|+++||++||+|+++|++++|+...||..
T Consensus 165 ---~~~~~k~m~~~~~i~~~~~~~~~Pagl~lYW~~s~~~si~Q~~~l~~~~~~~~~ 218 (223)
T PRK00145 165 ---QAGQMKTMNIGMSIFMGVMSWKFKSALVLYWVIGNLIQIIQTYFIKKLELKKKV 218 (223)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhh
Confidence 134566778888999999999999999999999999999999999988777643
No 3
>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes. Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane
Probab=100.00 E-value=5e-42 Score=317.66 Aligned_cols=188 Identities=30% Similarity=0.494 Sum_probs=164.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCc--ccHHHHHHHHHHhchhCCCCchhHHHHHHH
Q 016206 121 PWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSG--KRFVDQISLFRREKRAAGCPSLLWFIASFA 198 (393)
Q Consensus 121 pWw~aIil~Ti~vRl~llPl~i~q~r~~~km~~l~Pel~~i~~k~~~~--k~~~e~~~L~kk~~~~~Gc~~~~~~llp~L 198 (393)
+||++|+++|+++|++++|++++|+|+++||++++||++++++|++++ +.++|++++|||| ||++++. ++|++
T Consensus 2 sW~~aIil~ti~vR~~~~Pl~i~~~~~~~k~~~~~P~l~~i~~k~~~~~~~~~~~~~~l~k~~----~~~p~~~-~~~~l 76 (198)
T PF02096_consen 2 SWGLAIILTTILVRLILLPLSIKQQRSSAKMQELQPELKEIQEKYKEDQQKMQQEMQKLYKKH----GVNPLKG-CLPPL 76 (198)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHc----CCCcHHH-HHHHH
Confidence 899999999999999999999999999999999999999999987654 3467888899987 8999865 47889
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCccccccccccCCCCC-----CcchhHHHHHHHHHHHHHHHHHhcCcccCCccchhh
Q 016206 199 IQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYP-----HGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLL 273 (393)
Q Consensus 199 iQiPifi~~f~aLR~ma~~~~p~l~~~g~LWf~DLt~~D-----pg~~~~ILPil~~~l~~l~~~~~~~~~~~~~~~g~~ 273 (393)
+|+|+|+++|+++|+|+. +|++.++|++||+||+.+| | +++||++++++++++.+++.+ ....+.+
T Consensus 77 iq~Pif~~~~~~lr~~~~--~~~~~~~g~lw~~dL~~~D~~~~~p---~~iLPil~~~~~~~~~~~~~~-~~~~~~~--- 147 (198)
T PF02096_consen 77 IQIPIFIGLFRALRRMAE--VPSLATGGFLWFPDLTAPDPTMGLP---YFILPILAGASMFLNQELSMK-NSKQKSP--- 147 (198)
T ss_pred HHHHHHHHHHHHHHHHHH--hcccccCceeChHhcCCCCccchhH---HHHHHHHHHHHHHHHHHHHHh-ccccCCc---
Confidence 999999999999999986 7899999999999999999 7 899999999999999999865 2111111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHHHHHHHHHHccH
Q 016206 274 GLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHP 323 (393)
Q Consensus 274 ~~~~k~~k~~l~i~~lp~~~~~~~~Paal~LYWitS~~fsl~Q~~~lr~p 323 (393)
...+.+|.+++++++.+++++.++|+|+++||++||+|+++|++++|++
T Consensus 148 -~~~~~~k~m~~~~~~~~~~~~~~~Paal~lYw~~s~~~~l~Q~~~l~~~ 196 (198)
T PF02096_consen 148 -QQAKMMKIMLYIMPLMFLFFTSFFPAALFLYWITSNLFSLLQTLILRRP 196 (198)
T ss_pred -cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1135566777788999999999999999999999999999999999875
No 4
>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain. This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.
Probab=100.00 E-value=1e-41 Score=312.41 Aligned_cols=179 Identities=26% Similarity=0.438 Sum_probs=158.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc--cHHHHHHHHHHhchhCCCCchhHHHHHHH
Q 016206 121 PWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGK--RFVDQISLFRREKRAAGCPSLLWFIASFA 198 (393)
Q Consensus 121 pWw~aIil~Ti~vRl~llPl~i~q~r~~~km~~l~Pel~~i~~k~~~~k--~~~e~~~L~kk~~~~~Gc~~~~~~llp~L 198 (393)
+||++|+++|+++|++++|++++|+|+++||++++||++++++|+++++ .++|++++|||| ||+|++. .+|++
T Consensus 1 ~w~~sIi~~ti~vR~~~~Pl~~~~~~~~~km~~i~P~~~~i~~k~k~~~~~~~~e~~~l~k~~----~~~p~~~-~lp~l 75 (181)
T TIGR03592 1 NWGLAIILLTIIVRLLLLPLTLKQYKSMRKMQELQPKLKEIQEKYKDDPQKLQQEMMKLYKEE----GVNPLGG-CLPLL 75 (181)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHh----CCCcHHH-HHHHH
Confidence 7999999999999999999999999999999999999999999877654 367889999998 7888765 47889
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCccccccccccCCCCCCcchhHHHHHHHHHHHHHHHHHhcCcccCCccchhhhHHHH
Q 016206 199 IQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAK 278 (393)
Q Consensus 199 iQiPifi~~f~aLR~ma~~~~p~l~~~g~LWf~DLt~~Dpg~~~~ILPil~~~l~~l~~~~~~~~~~~~~~~g~~~~~~k 278 (393)
+|+|+|+++|+++|++ +++.++|++||+||+.+|| +++||++++++++++.+++.... . + .+
T Consensus 76 iQ~Pif~~~~~~lr~~-----~~l~~~~flW~~dL~~~Dp---~~iLPii~~~~~~~~~~~~~~~~---~-~------~~ 137 (181)
T TIGR03592 76 IQMPIFIALYQVLRRS-----IELRHAPFLWIKDLSAPDP---YYILPILMGATMFLQQKLSPSGP---P-D------PA 137 (181)
T ss_pred HHHHHHHHHHHHHHhh-----HHhccCCCcCccccCcccH---HHHHHHHHHHHHHHHHHhcCCCC---C-C------HH
Confidence 9999999999999997 4789999999999999999 89999999999999999875531 1 1 12
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHHHHHHHHHHcc
Q 016206 279 YYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKH 322 (393)
Q Consensus 279 ~~k~~l~i~~lp~~~~~~~~Paal~LYWitS~~fsl~Q~~~lr~ 322 (393)
.+|.+++++|+.+++++.++|+|+++||++||+|+++|++++|.
T Consensus 138 ~~k~m~~~~p~~~~~~~~~~pa~l~lYw~~s~~~sl~Q~~~l~~ 181 (181)
T TIGR03592 138 QQKIMMYIMPLMFLFFFLSFPAGLVLYWVVSNLFTIIQQLIINR 181 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35567778999999999999999999999999999999999873
No 5
>PRK01622 OxaA-like protein precursor; Validated
Probab=100.00 E-value=2.2e-41 Score=325.64 Aligned_cols=199 Identities=20% Similarity=0.294 Sum_probs=171.1
Q ss_pred HHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhCCCCCCCCCCCCCccc-------HH
Q 016206 104 VRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKK----IQRIAELLPRLPPPFPPPLSGKR-------FV 172 (393)
Q Consensus 104 v~~i~~lLe~iH~~tGlpWw~aIil~Ti~vRl~llPl~i~q~r~----~~km~~l~Pel~~i~~k~~~~k~-------~~ 172 (393)
+.++.++++++|+.+|.|||++|+++|+++|++++|++++|+|+ ++||+++|||++++++|++++++ ++
T Consensus 42 ~~p~~~ll~~l~~~~~~~wg~aIil~TiiiR~illPl~i~q~ks~~~~~~km~~iqP~l~~iq~kyk~~~d~~~~~~~~~ 121 (256)
T PRK01622 42 VYPFSFLIQFVAHHIGGSYGIAIIIVTLIIRSLMIPLAVSQYKSQRGMQEKMAVMKPELDKIQAKLKVTKDLEKQKEYQK 121 (256)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCHHHHHHHHHHhccCCHHHHHHHHH
Confidence 67788999999999999999999999999999999999999999 88999999999999998765332 45
Q ss_pred HHHHHHHHhchhCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCccccccccccCCCCCCcchhHHHHHHHHHH
Q 016206 173 DQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGL 252 (393)
Q Consensus 173 e~~~L~kk~~~~~Gc~~~~~~llp~LiQiPifi~~f~aLR~ma~~~~p~l~~~g~LWf~DLt~~Dpg~~~~ILPil~~~l 252 (393)
|++++|||+ ||+|+....+|+++|+|||+++|+++|++ |++.++|++|| ||+.+| +|||++++++
T Consensus 122 e~~~Lyk~~----gi~P~~~g~lp~liQ~Pif~~lf~~lr~~-----~~l~~~~flW~-dLs~~D-----~ILPil~~~~ 186 (256)
T PRK01622 122 EMMELYKSG----NINPLAMGCLPLLIQMPILSAFYYAIRRT-----EEIASHSFLWF-NLGHAD-----HILPIIAGLT 186 (256)
T ss_pred HHHHHHHHc----CCCCchhhHHHHHHHHHHHHHHHHHHHhC-----hhccCCCceee-CCcchh-----HHHHHHHHHH
Confidence 677888887 67777634599999999999999999987 47889999999 999998 6999999999
Q ss_pred HHHHHHHhcCcccCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHHHHHHHHHHccHH
Q 016206 253 HYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPA 324 (393)
Q Consensus 253 ~~l~~~~~~~~~~~~~~~g~~~~~~k~~k~~l~i~~lp~~~~~~~~Paal~LYWitS~~fsl~Q~~~lr~p~ 324 (393)
++++.+++... ..++.+ .+.+|.|++++|+.+++++.++|+|+++||++||+|+++|++++|+..
T Consensus 187 ~~~~~~~~~~~----~~~~~q---~~~~k~m~~~~pi~~~~~~~~~Psgl~lYW~~snl~si~Q~~~l~~~~ 251 (256)
T PRK01622 187 YFIQMKVSQSN----GTSPEQ---VQMLKIQGIMMPAMILFMSFAAPSALVLYWITGGLFLMGQTIVLRKVM 251 (256)
T ss_pred HHHHHHHcCCC----CCChHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999876532 111111 345677788899999999999999999999999999999999998653
No 6
>PRK02463 OxaA-like protein precursor; Provisional
Probab=100.00 E-value=2e-41 Score=332.55 Aligned_cols=212 Identities=20% Similarity=0.253 Sum_probs=175.8
Q ss_pred cHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhCCCCCCCCCCCCCcc-------cH
Q 016206 103 PVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKK----IQRIAELLPRLPPPFPPPLSGK-------RF 171 (393)
Q Consensus 103 Pv~~i~~lLe~iH~~tGlpWw~aIil~Ti~vRl~llPl~i~q~r~----~~km~~l~Pel~~i~~k~~~~k-------~~ 171 (393)
-+.++.++++++|..+|++||++|+++|+++|++++|++++|+++ ++||++++||+++|++|+++++ .+
T Consensus 41 l~~p~~~~l~~i~~~~g~~~GlaII~~TiivRlillPL~i~q~~ka~~~~~KM~~lqPe~~~Iq~Kyk~~~~~~~~~~~q 120 (307)
T PRK02463 41 LGAPMSYFIDYFANNLGLGFGLAIIIVTIIVRLIILPLGLYQSWKATYQSEKMAYLKPVFEPINERLKNATTQEEKMAAQ 120 (307)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHhcCCChHHHHHHH
Confidence 467788999999999999999999999999999999999998875 6899999999999999876542 25
Q ss_pred HHHHHHHHHhchhCCCCchhH-HHHHHHHHHHHHHHHHHHHhhhccCCCCCCccccccccccCCCCCCcchhHHHHHHHH
Q 016206 172 VDQISLFRREKRAAGCPSLLW-FIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMA 250 (393)
Q Consensus 172 ~e~~~L~kk~~~~~Gc~~~~~-~llp~LiQiPifi~~f~aLR~ma~~~~p~l~~~g~LWf~DLt~~Dpg~~~~ILPil~~ 250 (393)
+|++++|||++ ++|+.. ..+|+|+|+|||+++|+++|. +|++.+++|+|| ||+.+ +++||++++
T Consensus 121 ~em~~lyke~g----inp~~~~GCLP~LIQ~PIf~aly~ai~~-----~~~l~~~~flwi-dL~~p-----~~iLpii~~ 185 (307)
T PRK02463 121 TELMAAQRENG----ISMLGGIGCLPLLIQMPFFSALYFAAQY-----TKGVSTSTFLGI-DLGSP-----SLVLTAIIG 185 (307)
T ss_pred HHHHHHHHHcC----CCCccccchHHHHHHHHHHHHHHHHHhc-----chhhccCCeeee-ecCch-----hHHHHHHHH
Confidence 67889999985 333221 129999999999999999995 378999999999 99865 479999999
Q ss_pred HHHHHHHHHhcCcccCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHHHHHHHHHHc---cHHHHh
Q 016206 251 GLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALK---HPASRT 327 (393)
Q Consensus 251 ~l~~l~~~~~~~~~~~~~~~g~~~~~~k~~k~~l~i~~lp~~~~~~~~Paal~LYWitS~~fsl~Q~~~lr---~p~vRk 327 (393)
++++++.+++.... .++ ..+.||.|++++|++++++++++|+|+.+||++||+|+++|+++++ +|++|+
T Consensus 186 v~~~~q~~~~~~~~--~~~------q~~~mk~m~~~~Pim~~~~~~~~PagL~lYW~~snlfsi~Q~~i~~~~~~pk~~~ 257 (307)
T PRK02463 186 VLYFFQSWLSMMGV--PEE------QREQMKAMMYMMPIMMVVFSFSSPAGVGLYWLVGGFFSIIQQLITTYILKPRLRK 257 (307)
T ss_pred HHHHHHHHHhccCC--Chh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999988764321 111 1356778899999999999999999999999999999999999976 788887
Q ss_pred HhCCCCCCCC
Q 016206 328 MLGLPDKVVP 337 (393)
Q Consensus 328 ~lglp~~~~~ 337 (393)
...=..+.+|
T Consensus 258 ~i~~e~~~~p 267 (307)
T PRK02463 258 QIAEEFAKNP 267 (307)
T ss_pred HHHHHhhcCC
Confidence 7654444444
No 7
>PRK01318 membrane protein insertase; Provisional
Probab=100.00 E-value=5.9e-41 Score=349.78 Aligned_cols=204 Identities=20% Similarity=0.326 Sum_probs=174.3
Q ss_pred CCCCccc--HHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc--cHH
Q 016206 97 GEESSLP--VRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGK--RFV 172 (393)
Q Consensus 97 ~~~~~~P--v~~i~~lLe~iH~~tGlpWw~aIil~Ti~vRl~llPl~i~q~r~~~km~~l~Pel~~i~~k~~~~k--~~~ 172 (393)
.++||.. +.++.++|+++|.++| |||++|+++|+++|++++|++++|.|+++||++++|+|+++++|+++++ .++
T Consensus 297 ~~~G~~~~~~~pl~~~L~~i~~~~g-~wg~aIillTiiiR~il~Pl~~~s~~s~~km~~lqP~~~~i~~kyk~d~~k~~~ 375 (521)
T PRK01318 297 VDYGWLWFITKPLFWLLDFLHSFVG-NWGWAIILLTIIVKLLLFPLTYKSYVSMAKMKVLQPKMQELKEKYKDDPQKMQQ 375 (521)
T ss_pred cccCcHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhHhhHHHHHH
Confidence 3778864 7899999999999999 9999999999999999999999999999999999999999999877664 578
Q ss_pred HHHHHHHHhchhCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccc-ccccCCCCCCcchhHHH-----H
Q 016206 173 DQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIW-WFQNLTEYPHGVLGSIF-----P 246 (393)
Q Consensus 173 e~~~L~kk~~~~~Gc~~~~~~llp~LiQiPifi~~f~aLR~ma~~~~p~l~~~g~L-Wf~DLt~~Dpg~~~~IL-----P 246 (393)
|+|++|||++ |+|+.. .+|+|+|+||||++|+++|++. .+..++|+ ||+||+.+|| ++|| |
T Consensus 376 e~~~LYKk~~----vnPl~g-clp~liQiPifialy~~l~~~~-----el~~~~fl~Wi~DLs~~Dp---~~il~~~~lP 442 (521)
T PRK01318 376 EMMELYKKEK----VNPLGG-CLPILIQIPIFFALYKVLLVSI-----ELRHAPFIGWIHDLSAPDP---YFILHIGLLP 442 (521)
T ss_pred HHHHHHHHcC----CCccch-hHHHHHHHHHHHHHHHHHHHHH-----HhccCchheeecccccccc---chhHHHHHHH
Confidence 9999999995 444332 2999999999999999999986 46677887 9999999999 7888 9
Q ss_pred HHHHHHHHHHHHHhcCcccCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHHHHHHHHHHccHHHH
Q 016206 247 VLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASR 326 (393)
Q Consensus 247 il~~~l~~l~~~~~~~~~~~~~~~g~~~~~~k~~k~~l~i~~lp~~~~~~~~Paal~LYWitS~~fsl~Q~~~lr~p~vR 326 (393)
++++++++++.+++... . . . .+++++.+||++++++++++|+|+++||++||+++++|++++++...+
T Consensus 443 il~~~~~~~~~~l~~~~--~---~----~---~q~kim~~mpi~~~~~~~~~PagL~lYW~~sn~~si~Q~~~l~~~~~~ 510 (521)
T PRK01318 443 ILMGITMFLQQKLNPTP--T---D----P---MQAKIMKFMPLIFTFFFLSFPAGLVLYWIVNNLLTIIQQYLINRRLEK 510 (521)
T ss_pred HHHHHHHHHHHHhcCCC--C---C----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 99999999999887432 1 1 1 112344568988888999999999999999999999999999865433
No 8
>PRK01001 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=1.9e-39 Score=342.19 Aligned_cols=199 Identities=20% Similarity=0.360 Sum_probs=165.2
Q ss_pred HHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc--cHHHHHHHHHHhc--
Q 016206 107 LISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGK--RFVDQISLFRREK-- 182 (393)
Q Consensus 107 i~~lLe~iH~~tGlpWw~aIil~Ti~vRl~llPl~i~q~r~~~km~~l~Pel~~i~~k~~~~k--~~~e~~~L~kk~~-- 182 (393)
+.++++++|..+| |||++|+++|+++|++++|++++|.|+++||+++||+|++|++|+++++ .++|+|++|||++
T Consensus 562 L~~ll~~fh~l~G-nwGlAIILlTIIVRLlLlPLtiKS~kSmaKMq~LQPemqeIQeKYKdD~qK~QqEmMkLYKe~GVN 640 (795)
T PRK01001 562 LFIIMKFFKFLTG-SWGISIILLTVFLKLLLYPLNAWSIRSMRRMQKLSPYIQEIQQKYKKEPKRAQMEIMALYKTNKVN 640 (795)
T ss_pred HHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhHHHHHHHHHhHhHHHHHHHHHHHHHHHcCCC
Confidence 4566688999999 9999999999999999999999999999999999999999999887664 5789999999995
Q ss_pred hhCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccc--ccccCCCCCCcc-----------hhHHHHHHH
Q 016206 183 RAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIW--WFQNLTEYPHGV-----------LGSIFPVLM 249 (393)
Q Consensus 183 ~~~Gc~~~~~~llp~LiQiPifi~~f~aLR~ma~~~~p~l~~~g~L--Wf~DLt~~Dpg~-----------~~~ILPil~ 249 (393)
+..|| +|+|+|+|||+++|+++|++. ++..++|+ |++||+.+||.+ .++|||+++
T Consensus 641 Pl~GC-------LPmLIQmPIFfALY~vL~~si-----eLRgasFLpgWI~DLSapDplf~~~~~i~FiGd~i~ILPILm 708 (795)
T PRK01001 641 PITGC-------LPLLIQLPFLIAMFDLLKSSF-----LLRGASFIPGWIDNLTAPDVLFSWETPIWFIGNEFHLLPILL 708 (795)
T ss_pred chHHH-------HHHHHHHHHHHHHHHHHHHhH-----HhcCCchhhhhHhhccCCCccccccccccccccchhHHHHHH
Confidence 44555 999999999999999999986 45556676 999999999832 134999999
Q ss_pred HHHHHHHHHHhcCcccCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHHHHHHHHHHccH
Q 016206 250 AGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHP 323 (393)
Q Consensus 250 ~~l~~l~~~~~~~~~~~~~~~g~~~~~~k~~k~~l~i~~lp~~~~~~~~Paal~LYWitS~~fsl~Q~~~lr~p 323 (393)
+++++++++++..... +..++. ++..+.|+.+||+++++++.++|+|+++||++||+++++|++++++.
T Consensus 709 gvtmflqqkls~~~~~-dp~t~q----q~Qqk~M~~iMPImf~f~f~~fPSGL~LYW~tSNl~SI~QQ~iI~k~ 777 (795)
T PRK01001 709 GVVMFAQQKISSLKRK-GPVTDQ----QRQQEAMGTMMALLFTFMFYNFPSGLNIYWLSSMLLGVIQQWVTNKI 777 (795)
T ss_pred HHHHHHHHHhcccCCC-Cccchh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 9999999998754321 111111 12233455678998888999999999999999999999999999853
No 9
>PRK03449 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=1.4e-38 Score=311.72 Aligned_cols=217 Identities=20% Similarity=0.265 Sum_probs=169.5
Q ss_pred CCCcccHHHHHHHHHHHh-----hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc--c
Q 016206 98 EESSLPVRALISFLDTYH-----DFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGK--R 170 (393)
Q Consensus 98 ~~~~~Pv~~i~~lLe~iH-----~~tGlpWw~aIil~Ti~vRl~llPl~i~q~r~~~km~~l~Pel~~i~~k~~~~k--~ 170 (393)
|++|+|++.+.++++++| ..+|+|||++|+++|+++|++++|++++|.|+++||++++|+++++++|+++++ .
T Consensus 3 ~~~~~P~~~~l~~~~~~~~~~l~~~~Gl~w~~aIil~TiivR~~l~Pl~i~q~ks~~km~~lqP~l~~iq~kyk~~~~~~ 82 (304)
T PRK03449 3 DFIYYPVSAILWFWHKLFSFVLGPDNGFAWALSVMFLVFTLRALLYKPFVRQIRTTRKMQELQPQIKALQKKYGNDRQKM 82 (304)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHhhhhHHHH
Confidence 678999999999988765 458999999999999999999999999999999999999999999999877653 4
Q ss_pred HHHHHHHHHHhchhCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccCCC----CCCc----------------ccccc--
Q 016206 171 FVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGH----PGFD----------------CGGIW-- 228 (393)
Q Consensus 171 ~~e~~~L~kk~~~~~Gc~~~~~~llp~LiQiPifi~~f~aLR~ma~~~~----p~l~----------------~~g~L-- 228 (393)
++|++++|||+ ||+|+.. .+|+|+|+|||+++|++||+|+.... ++++ .++|+
T Consensus 83 ~~e~~~Lyk~~----gvnP~~g-clP~liQlPi~~~ly~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sFl~~ 157 (304)
T PRK03449 83 ALEMQKLQKEH----GFNPILG-CLPMLAQIPVFLGLFHVLRSFNRTGTGFGQLGMSVEENRNTPNYVFSAEDVQSFLDA 157 (304)
T ss_pred HHHHHHHHHHc----CCCchHH-HHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhccccccccccHHHHHHHhhh
Confidence 67899999998 6766643 49999999999999999999954211 1110 01344
Q ss_pred ---------ccc----------cCCCCCCcchhHHHHHHHHHHHHHHHHHhcCcccCCccchhhhHHHHHHHHHHHHHHH
Q 016206 229 ---------WFQ----------NLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTL 289 (393)
Q Consensus 229 ---------Wf~----------DLt~~Dpg~~~~ILPil~~~l~~l~~~~~~~~~~~~~~~g~~~~~~k~~k~~l~i~~l 289 (393)
|+. |++..|......++|++++++++++.+++....... ++....+..++|.|++++|+
T Consensus 158 ~~~g~pL~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Ila~v~t~~~~~~s~~~~~~~--~~~~~~~~~m~k~M~~~mP~ 235 (304)
T PRK03449 158 RLFGAPLSAYITMPRSGLDAFVDFTRTNIILVGVPLMIIAGVATHFNSRASVARQSAE--AAANPQTAMMNKLALWVFPL 235 (304)
T ss_pred hhcCCChHhhhcccchhhchhcccccchhHHHHHHHHHHHHHHHHHHHHHHhhccccc--cccCcchHHHHHHHHHHhHH
Confidence 332 555555322235688999999999998876542211 11111223344678899999
Q ss_pred HHHHHhhhhhhHhHHHHHHhhHHHHHHHHHHc
Q 016206 290 PLFFLGYYIPQGSLVYWVTNSSFSIVQQLALK 321 (393)
Q Consensus 290 p~~~~~~~~Paal~LYWitS~~fsl~Q~~~lr 321 (393)
++++++.++|+|+.|||++||+|+++|+++++
T Consensus 236 m~~~~~~~~Pagl~LYW~~snl~~i~Qq~~i~ 267 (304)
T PRK03449 236 GVLVGGPFLPLAILLYWVSNNIWTFGQQHYVF 267 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999986
No 10
>COG0706 YidC Preprotein translocase subunit YidC [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.2e-37 Score=306.06 Aligned_cols=205 Identities=22% Similarity=0.397 Sum_probs=176.9
Q ss_pred CcccHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCC-Ccc--cHHHHHH
Q 016206 100 SSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPL-SGK--RFVDQIS 176 (393)
Q Consensus 100 ~~~Pv~~i~~lLe~iH~~tGlpWw~aIil~Ti~vRl~llPl~i~q~r~~~km~~l~Pel~~i~~k~~-~~k--~~~e~~~ 176 (393)
.|++...+..+++++|.+.|++||++|+++|+++|++++|++.++.++++||+++||+++++++|++ +++ .++|+|+
T Consensus 88 f~~~~~~~~~~~~~~~~~~g~n~G~sIi~~ti~vRl~i~Pl~~~~~~s~~km~~lqP~~~~i~~kyk~~~~~~~q~e~~~ 167 (314)
T COG0706 88 FWNILAPLFPLLLFIDSFSGLNWGLSIILLTIIVRLLIFPLSQKSTRSMAKMQELQPKIKEIQEKYKGTDKQKQQQEMMK 167 (314)
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHhCCCCHHHHHHHHHH
Confidence 3455555788999999999999999999999999999999999999999999999999999999888 453 3679999
Q ss_pred HHHHhc--hhCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccc-ccccCCCCCCcchhH--HHHHHHHH
Q 016206 177 LFRREK--RAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIW-WFQNLTEYPHGVLGS--IFPVLMAG 251 (393)
Q Consensus 177 L~kk~~--~~~Gc~~~~~~llp~LiQiPifi~~f~aLR~ma~~~~p~l~~~g~L-Wf~DLt~~Dpg~~~~--ILPil~~~ 251 (393)
+||||+ +..|| +|+++|+|+|+++|++++++. .+..++|+ |++||+.+|| ++ ++|+++++
T Consensus 168 Lyk~~~vnPl~gc-------lP~liQ~Pifialy~~l~~~~-----~l~~~~f~~w~~dl~~~dp---~~~~~~pii~gv 232 (314)
T COG0706 168 LYKKHKVNPLAGC-------LPLLIQMPIFIALYYVLRSTV-----ELRGAPFLGWITDLSLPDP---DYILLLPILAGV 232 (314)
T ss_pred HHHHhCCCchhhH-------HHHHHHHHHHHHHHHHHHhcc-----cccccchhhhhhcccCCCC---chhhHHHHHHHH
Confidence 999996 45677 999999999999999999986 44455555 9999999999 55 55999999
Q ss_pred HHHHHHHHhcCcccCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHHHHHHHHHHccHHHHh
Q 016206 252 LHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASRT 327 (393)
Q Consensus 252 l~~l~~~~~~~~~~~~~~~g~~~~~~k~~k~~l~i~~lp~~~~~~~~Paal~LYWitS~~fsl~Q~~~lr~p~vRk 327 (393)
+++.+.+++..... .+ + .+.+++++.+||+.++++++++|+||.+||++||+|+++|+++++++..++
T Consensus 233 ~~f~q~~ls~~~~~-~~----q---~~~~~~~~~impi~f~~~~~~~PaGL~LYW~~~n~fsi~Qq~ii~~~~~~~ 300 (314)
T COG0706 233 TMFLQQKLSPRNLS-TP----Q---DPQQKKMMYIMPIIFTFFFFNFPAGLVLYWIVSNLFSILQQYILNKPLEKK 300 (314)
T ss_pred HHHHHHHhccccCC-cc----c---CHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHhhhhhhh
Confidence 99999998866422 11 1 234567888999999999999999999999999999999999999998876
No 11
>PRK01315 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=8.9e-37 Score=301.60 Aligned_cols=214 Identities=21% Similarity=0.342 Sum_probs=163.4
Q ss_pred CcccHHHHH-HHHHHHhh--------hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-
Q 016206 100 SSLPVRALI-SFLDTYHD--------FTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGK- 169 (393)
Q Consensus 100 ~~~Pv~~i~-~lLe~iH~--------~tGlpWw~aIil~Ti~vRl~llPl~i~q~r~~~km~~l~Pel~~i~~k~~~~k- 169 (393)
..+|+.++. .++.++|. .+|+|||++|+++|+++|++++|++++|+|+++||++++||+++|++|+++++
T Consensus 11 i~~P~~~~l~~il~~~h~ll~~~~~~~tGl~w~~aIi~~Ti~vR~~l~Pl~i~q~~~~~km~~lqPe~~~iq~kyk~~~~ 90 (329)
T PRK01315 11 IMTPLYWVISGILVLFHTLLGFLFGPDSGLTWVLSIVGLVIVIRALLIPLFVKQIKSQRNMQEIQPKMKKIQEKYKGDRE 90 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhHHH
Confidence 357766543 44455553 47899999999999999999999999999999999999999999999877653
Q ss_pred -cHHHHHHHHHHhchhCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccCC----------CCCCccccccccccCCCC--
Q 016206 170 -RFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDG----------HPGFDCGGIWWFQNLTEY-- 236 (393)
Q Consensus 170 -~~~e~~~L~kk~~~~~Gc~~~~~~llp~LiQiPifi~~f~aLR~ma~~~----------~p~l~~~g~LWf~DLt~~-- 236 (393)
.++|++++|||+ ||+|+.. .+|+|+|+|||+++|++||+++... .+++..+.++|+ +|+..
T Consensus 91 ~~~~e~~~Lykk~----ginp~~g-clp~liQ~Pif~alf~~l~~~~~~~~~~~~~~~~~~~s~~~~~~fg~-~L~~~f~ 164 (329)
T PRK01315 91 RMSQEMMKLYKET----GTNPLSS-CLPLLLQMPIFFALYRVLDSAASRGDGIGPINPPLLESFRHAHIFGA-PLAATFL 164 (329)
T ss_pred HHHHHHHHHHHHc----CCCchHH-HHHHHHHHHHHHHHHHHHHHHHhccccccchhhhHHHhhhccccccc-ccccccc
Confidence 467899999998 6777654 4899999999999999999876421 234555666665 33322
Q ss_pred --------CCcchhHHHHHHHHHHHHHHHHHhcCcccCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHH
Q 016206 237 --------PHGVLGSIFPVLMAGLHYTNVQLSFGASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVT 308 (393)
Q Consensus 237 --------Dpg~~~~ILPil~~~l~~l~~~~~~~~~~~~~~~g~~~~~~k~~k~~l~i~~lp~~~~~~~~Paal~LYWit 308 (393)
|....+.|||+++++++|++......+...+ ++ ..+++.+.+|.|+++||+++++++.++|+|+.+||++
T Consensus 165 ~~~~~~~~~~~ii~~iL~il~~~~~~~~q~~~~~k~~~~-~~-~~~~~~~~~K~M~~imPim~~~~~~~fPaGL~LYW~~ 242 (329)
T PRK01315 165 QALNAGNTAVQVVAAVLIILMSASQFITQLQLMTKNMPP-EA-KTGPMAQQQKMLLYLFPLMFLVSGIAFPVGVLFYWLT 242 (329)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-cc-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2112346899999999998865433322111 11 1123456677889999999999999999999999999
Q ss_pred hhHHHHHHHHHHc
Q 016206 309 NSSFSIVQQLALK 321 (393)
Q Consensus 309 S~~fsl~Q~~~lr 321 (393)
||+|+++|++++.
T Consensus 243 snl~si~Qq~~v~ 255 (329)
T PRK01315 243 SNVWTMGQQFYVI 255 (329)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999864
No 12
>PRK02201 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=7.3e-37 Score=304.63 Aligned_cols=208 Identities=10% Similarity=0.147 Sum_probs=162.0
Q ss_pred HHHHHHHHHH------hhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCc--------cc
Q 016206 105 RALISFLDTY------HDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSG--------KR 170 (393)
Q Consensus 105 ~~i~~lLe~i------H~~tGlpWw~aIil~Ti~vRl~llPl~i~q~r~~~km~~l~Pel~~i~~k~~~~--------k~ 170 (393)
.++.+++.++ |...|++||++|+++|+++|++++|++++|.++++||+++|||++++++|++++ +.
T Consensus 110 ~P~~~il~~i~~~~~~~~~~G~~w~laII~~TiivRlillPl~~k~~~s~~km~~lqPel~~Iq~Kyk~~~~d~~~~~k~ 189 (357)
T PRK02201 110 YPIAQIILSIMASQSLSELYGWSTILAIIVVVLIIRLISFLITFKSTFNQEKQEELQGKKAKIDAKYKDYKKDKQMKQRK 189 (357)
T ss_pred HHHHHHHHHHHHhccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHH
Confidence 3444555554 467899999999999999999999999999999999999999999999987654 23
Q ss_pred HHHHHHHHHHhchhCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCccccccccccCCCCCC------cchhHH
Q 016206 171 FVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPH------GVLGSI 244 (393)
Q Consensus 171 ~~e~~~L~kk~~~~~Gc~~~~~~llp~LiQiPifi~~f~aLR~ma~~~~p~l~~~g~LWf~DLt~~Dp------g~~~~I 244 (393)
++|++++|||+ ||+|+.. .+|+|+|+|||+++|+++|.+. ++..+.++|+ ||+.+|+ .+.+.+
T Consensus 190 q~e~~~Lykk~----ginP~~g-clP~LiQ~Pif~aly~vl~~~~-----~l~~~~flgi-dLs~~~~~~~~~~~~~~l~ 258 (357)
T PRK02201 190 QQEIQELYKKH----NISPFSP-FVQMFVTLPIFIAVYRVVQSLP-----SIKVTTWLGI-DLSATSWQEIFAGNWIYLP 258 (357)
T ss_pred HHHHHHHHHHc----CCCcHHH-HHHHHHHHHHHHHHHHHHHhhH-----hhccCCCccc-ccCCCChhhhccccchHHH
Confidence 57889999998 6766643 4999999999999999999885 6777889999 9999883 122455
Q ss_pred HHHHHHHHHHHHHHHhc----CcccCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHHHHHHHHHH
Q 016206 245 FPVLMAGLHYTNVQLSF----GASSLGKENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLAL 320 (393)
Q Consensus 245 LPil~~~l~~l~~~~~~----~~~~~~~~~g~~~~~~k~~k~~l~i~~lp~~~~~~~~Paal~LYWitS~~fsl~Q~~~l 320 (393)
++++++++++++..+.. ++.+....+..+.+..+.++.|+.+||+.+++++.++|+|+.|||++||+|+++|++++
T Consensus 259 l~ii~~~~~~ls~~l~~~l~~kk~~~~~~~~~~~~~~k~~~~m~~impi~~~~~~~~~PaGL~LYW~~snl~tI~Qq~~i 338 (357)
T PRK02201 259 ILIIVVPVQALSQLLPQILNKKKNKERTLNVKEKEALKKQNKTQNIISIVFIFFGVIFAAGVQIYWIIGGIWTILQTLGI 338 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777777765543 21110000111122345567788899999999999999999999999999999999999
Q ss_pred ccH
Q 016206 321 KHP 323 (393)
Q Consensus 321 r~p 323 (393)
++-
T Consensus 339 ~~~ 341 (357)
T PRK02201 339 HYF 341 (357)
T ss_pred HHH
Confidence 864
No 13
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=100.00 E-value=1.8e-34 Score=292.65 Aligned_cols=224 Identities=19% Similarity=0.263 Sum_probs=160.9
Q ss_pred CcccHHHHHHHHHH-Hhhhc----CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc-----
Q 016206 100 SSLPVRALISFLDT-YHDFT----GFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGK----- 169 (393)
Q Consensus 100 ~~~Pv~~i~~lLe~-iH~~t----GlpWw~aIil~Ti~vRl~llPl~i~q~r~~~km~~l~Pel~~i~~k~~~~k----- 169 (393)
..+|++.+.+++.+ +++.. |+|||++|+++|++||++++|++++|.|+++||++++|++++|++++++++
T Consensus 5 ~~~Pvs~vm~~~h~~~~~~~G~~~~l~W~isIi~ltiiVRliLlPL~~~q~ks~~km~~lqPel~~iq~kyk~~~d~e~~ 84 (429)
T PRK00247 5 FIYPVSGVMKLWHLLLHNVLGLDDSLAWFASLFGLVITVRAIIAPFTWQQYKSGRTAAHIRPKRKALREEYKGKTDEASI 84 (429)
T ss_pred HHHHHHHHHHHHHHHHhccccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCCHHHH
Confidence 35788777766553 45333 689999999999999999999999999999999999999999999876543
Q ss_pred --cHHHHHHHHHHhchhCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcc-----------------------
Q 016206 170 --RFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDC----------------------- 224 (393)
Q Consensus 170 --~~~e~~~L~kk~~~~~Gc~~~~~~llp~LiQiPifi~~f~aLR~ma~~~~p~l~~----------------------- 224 (393)
.++|++++||++ ||+|+. ..+|+|+|+|||+++|++||+|+. +.+|+.+
T Consensus 85 ~~~qqe~~~LyKe~----ginP~~-gcLP~LIQiPIfigLy~vir~ma~-~~~Gl~~~~~~~ig~l~~~~v~sfl~a~~f 158 (429)
T PRK00247 85 RELQQKQKDLNKEY----GYNPLA-GCVPALIQIPVFLGLYQVLLRMAR-PEGGLENPVHQPIGFLTSEEVESFLQGRVF 158 (429)
T ss_pred HHHHHHHHHHHHHc----CCCchH-HHHHHHHHHHHHHHHHHHHHhccc-cCCccccccccccccCCHHHHHHHHhcccc
Confidence 246788889988 666664 349999999999999999999983 3344332
Q ss_pred ------------ccccccccCCCCCCcchhHHHHHHHH--HHHHHHHHHhcCcccC--CccchhhhHHHHHHHHHHHHHH
Q 016206 225 ------------GGIWWFQNLTEYPHGVLGSIFPVLMA--GLHYTNVQLSFGASSL--GKENGLLGLLAKYYKSYLNLMT 288 (393)
Q Consensus 225 ------------~g~LWf~DLt~~Dpg~~~~ILPil~~--~l~~l~~~~~~~~~~~--~~~~g~~~~~~k~~k~~l~i~~ 288 (393)
++++|+ +.+.+|. .+++||++++ ++++++..++...+.. ..+++....+.|+|..|++++|
T Consensus 159 GvpL~~~~sm~~e~~~~~-~~~~~~v--~~~ilPlii~a~vft~i~~~~s~~r~~~~~~~~~~~~~~~~k~m~~m~~~~P 235 (429)
T PRK00247 159 NVPLPAYVSMPAEQLAYL-GTTQATV--LAFVLPLFIAAAVFTAINMAMSTYRSFQTNDHDSGFAVGMLKFLIVMAILAP 235 (429)
T ss_pred CCCcccccccchhhhhhc-cCCccch--HHHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHhH
Confidence 223333 2333442 2478885544 4455676666543211 1223323345677777788899
Q ss_pred HHHHHHhhh--hhhHhHHHHHHhhHHHHHHHHHHccHHHHhHhCCCC
Q 016206 289 LPLFFLGYY--IPQGSLVYWVTNSSFSIVQQLALKHPASRTMLGLPD 333 (393)
Q Consensus 289 lp~~~~~~~--~Paal~LYWitS~~fsl~Q~~~lr~p~vRk~lglp~ 333 (393)
+++++++++ ||+||+|||++||+|+++|++++. ..++++..+++
T Consensus 236 im~~~~g~~~~~PaallLYWv~snlwtl~Qq~i~~-~~l~~~~P~~~ 281 (429)
T PRK00247 236 IFPLSLGLTGPFPTAIALYWVANNLWTLIQNIIMY-LILERKYPLTD 281 (429)
T ss_pred HHHHHHHHhccchHHHHHHHHHhhHHHHHHHHHHH-HHHHHhcCCCc
Confidence 888876665 799999999999999999999765 22444444433
No 14
>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.3e-31 Score=269.57 Aligned_cols=220 Identities=28% Similarity=0.449 Sum_probs=187.9
Q ss_pred hCCCCcccHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCcc------
Q 016206 96 AGEESSLPVRALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLPPPFPPPLSGK------ 169 (393)
Q Consensus 96 ~~~~~~~Pv~~i~~lLe~iH~~tGlpWw~aIil~Ti~vRl~llPl~i~q~r~~~km~~l~Pel~~i~~k~~~~k------ 169 (393)
....+|.|+..+|+.|+.+|+++|+|||++|+.+|+.+|..++|+.++++|+.+|++++.|+++++.++....+
T Consensus 76 ~~~~~~~p~~~lq~~l~~~h~~~g~pww~~i~~~t~~ir~~i~~~~~~~~~~~akls~~~~~mp~~~~~l~~a~~~~~~~ 155 (372)
T KOG1239|consen 76 LALSSWRPVATLQNELERLHVYSGLPWWASIVATTVLIRSLITPLLTNSQKNEAKLSKIFPEMPSLGEELGEAAQDNNAL 155 (372)
T ss_pred HHhcccCchhHHHHHHHHHHHHhCCcchHHHHHhHhhHhhhhhhHHHhhhhHHHHHhhcCcccHHHHHHHHhhhccccch
Confidence 35778999999999999999999999999999999999999999999999999999999999998876533211
Q ss_pred --cHHHHHHHHHHhchhCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCccccccccccCCCCCCcchhHHHHH
Q 016206 170 --RFVDQISLFRREKRAAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPV 247 (393)
Q Consensus 170 --~~~e~~~L~kk~~~~~Gc~~~~~~llp~LiQiPifi~~f~aLR~ma~~~~p~l~~~g~LWf~DLt~~Dpg~~~~ILPi 247 (393)
.++|+.+++++| |+++ +...+| ++|.|+|+++|.+||.|+ .+++++.++|.+||+||+.+|| ++++|+
T Consensus 156 ~~~q~~~~~l~~~~----~v~~-~~l~~~-v~q~~l~~sff~air~ma-~~v~~f~t~g~~wf~dLt~~dp---~~ilp~ 225 (372)
T KOG1239|consen 156 LSWQEEQKLLVKKY----GVKP-KQLALP-VVQGPLFISFFMAIRVMA-VPVPSFTTGGLLWFPDLTGPDP---LYILPG 225 (372)
T ss_pred HHHHHHHHhhhhhc----CCCc-chhhhh-hhcchhHHHHHHHHHHhh-ccccccchhhHHhcccccccCc---chhhHH
Confidence 134667777777 7876 555454 999999999999999999 8999999999999999999999 899999
Q ss_pred HHHHHHHHHHHHhcCcccCCccchhhh-HHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhhHHHHHHHHHHccHHHH
Q 016206 248 LMAGLHYTNVQLSFGASSLGKENGLLG-LLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNSSFSIVQQLALKHPASR 326 (393)
Q Consensus 248 l~~~l~~l~~~~~~~~~~~~~~~g~~~-~~~k~~k~~l~i~~lp~~~~~~~~Paal~LYWitS~~fsl~Q~~~lr~p~vR 326 (393)
++++++..+++.+... |..+ .+...|+.+..++++..+.++.++|.|+++||+ |+++|..++|. .+|
T Consensus 226 it~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ll~~~~t~~~~~a~~~ywl----~s~~~~~vlr~-~vr 293 (372)
T KOG1239|consen 226 ITLATLTLFIELGAET-------GLSSSKLLPAMKSFIRILPLLSLASTMQFPSAIFVYWL----FSLVQGLVLRS-EVR 293 (372)
T ss_pred HHHHHHHHHHHHHHHh-------hhhcccccchhHHHHHHhhhhhhhhhhhhhhhHHhhhh----hHHHHHHHhHH-HHH
Confidence 9999999999886543 2211 223345566666677766677899999999999 99999999999 999
Q ss_pred hHhCCCCCCCC
Q 016206 327 TMLGLPDKVVP 337 (393)
Q Consensus 327 k~lglp~~~~~ 337 (393)
+.+|+|+.+++
T Consensus 294 ~~l~~~~~~~~ 304 (372)
T KOG1239|consen 294 KKLGIPDVPSI 304 (372)
T ss_pred HhcCCCCCCCC
Confidence 99999999886
No 15
>PRK02654 putative inner membrane protein translocase component YidC; Provisional
Probab=99.95 E-value=5.1e-27 Score=228.92 Aligned_cols=109 Identities=18% Similarity=0.269 Sum_probs=95.6
Q ss_pred CCCcccH--HHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CCCCCCCCc--c
Q 016206 98 EESSLPV--RALISFLDTYHDFTGFPWWTIIVSSTVALRIALLPLIVLQLKKIQRIAELLPRLP----PPFPPPLSG--K 169 (393)
Q Consensus 98 ~~~~~Pv--~~i~~lLe~iH~~tGlpWw~aIil~Ti~vRl~llPl~i~q~r~~~km~~l~Pel~----~i~~k~~~~--k 169 (393)
|+||+-. .++..+++++|..+| +||++|+++|+++|++++|++++|+|+++||+.+||+|+ +|++||+++ +
T Consensus 2 dfG~g~i~~~il~~iL~f~y~~vg-swGlAIIllTIIVRlIL~PLsikQ~KS~~KM~~LQPemqkk~~eIqeKYKdDpqk 80 (375)
T PRK02654 2 DFGIGFISNNVMLPILDFFYGIVP-SYGLAIVALTLVIRFALYPLSAGSIRNMRRMKIAQPVMQKRQAEIQERYKNDPQK 80 (375)
T ss_pred CcchHHHHHhHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCchhhhHHHHHHHHhcCCHHH
Confidence 5566554 467889999999999 999999999999999999999999999999999999996 588877765 3
Q ss_pred cHHHHHHHHHHhc-hhCCCCchhHHHHHHHHHHHHHHHHHHHHhhh
Q 016206 170 RFVDQISLFRREK-RAAGCPSLLWFIASFAIQVPCFLVGVTSIRRM 214 (393)
Q Consensus 170 ~~~e~~~L~kk~~-~~~Gc~~~~~~llp~LiQiPifi~~f~aLR~m 214 (393)
.++|++++|||++ +..|| +|+++|+|||+++|++||..
T Consensus 81 ~QqEmmkLYKE~GNPlaGC-------LP~LIQmPIF~aLY~~LR~s 119 (375)
T PRK02654 81 QQEEMGKLMKEFGNPLAGC-------LPLLVQMPILFALFATLRGS 119 (375)
T ss_pred HHHHHHHHHHHcCCChhhH-------HHHHHHHHHHHHHHHHHHhC
Confidence 5789999999996 44677 99999999999999999984
No 16
>PF11421 Synthase_beta: ATP synthase F1 beta subunit; InterPro: IPR020971 F-type ATPases have 2 components, CF1 - the catalytic core - and CF0 - the membrane proton channel. CF1 has five subunits: alpha3, beta3, gamma1, delta1, epsilon1. CF0 has three main subunits: a, b and c. This entry represents the beta subunit of the F1 component. The NMR solution structure of the protein in SDS micelles was found to contain two helices, an N-terminal amphipathic alpha-helix and a C-terminal alpha-helix separated by a large unstructured internal domain. The N-terminal alpha-helix is the Tom20 receptor binding site whereas the C-terminal alpha-helix is located upstream of the mitochondrial processing peptidase cleavage site [].; GO: 0005524 ATP binding, 0016887 ATPase activity, 0006200 ATP catabolic process, 0006754 ATP biosynthetic process, 0000275 mitochondrial proton-transporting ATP synthase complex, catalytic core F(1); PDB: 1PYV_A.
Probab=63.84 E-value=7 Score=28.30 Aligned_cols=15 Identities=47% Similarity=0.518 Sum_probs=10.2
Q ss_pred ChhHHHHHHHHhhhh
Q 016206 1 MATAKLLLLQLRRCS 15 (393)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (393)
||+||+|-|.||-++
T Consensus 1 MASRR~lSSlLRSss 15 (49)
T PF11421_consen 1 MASRRLLSSLLRSSS 15 (49)
T ss_dssp ---SHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHh
Confidence 899999999988765
No 17
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=58.22 E-value=22 Score=31.92 Aligned_cols=96 Identities=13% Similarity=0.024 Sum_probs=42.9
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhCCCCCCCCCCCC--Cccc-HHHHHHHHHHhchhCCCCc
Q 016206 118 TGFPWWTIIVSSTVALRIALLPLI-----VLQLKKIQRIAELLPRLPPPFPPPL--SGKR-FVDQISLFRREKRAAGCPS 189 (393)
Q Consensus 118 tGlpWw~aIil~Ti~vRl~llPl~-----i~q~r~~~km~~l~Pel~~i~~k~~--~~k~-~~e~~~L~kk~~~~~Gc~~ 189 (393)
.-+|..++|+++.++.-++.-=+. -+..+..+++++++-+.++++++.. +.++ ++++.++.++..... -..
T Consensus 11 ~~~P~~i~v~~~~~~~~~~s~l~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~ 89 (168)
T PF01956_consen 11 VLLPITIVVFLIAILRGLISELLQKFLIDRKMDKYQKRMKEFQKRYRELRKNGDFKKPKKLEKRQMELMEKQQEMM-MMM 89 (168)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHHHH-HHH
Confidence 345777777777766666531111 1113344445555555544443211 1111 222233333322110 012
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhh
Q 016206 190 LLWFIASFAIQVPCFLVGVTSIRRM 214 (393)
Q Consensus 190 ~~~~llp~LiQiPifi~~f~aLR~m 214 (393)
++..+.-+++++++|..+++-....
T Consensus 90 mK~~~~~~v~~i~i~~wi~~~f~g~ 114 (168)
T PF01956_consen 90 MKPMFVTMVPQIPIFYWINYFFSGF 114 (168)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhhhc
Confidence 2333344566778777666666543
No 18
>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.85 E-value=69 Score=32.97 Aligned_cols=149 Identities=16% Similarity=0.036 Sum_probs=79.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCccccccccccCCCCCCcchhHHHHHHHHHHHHHHHHHhcCcccCCc
Q 016206 189 SLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWWFQNLTEYPHGVLGSIFPVLMAGLHYTNVQLSFGASSLGK 268 (393)
Q Consensus 189 ~~~~~llp~LiQiPifi~~f~aLR~ma~~~~p~l~~~g~LWf~DLt~~Dpg~~~~ILPil~~~l~~l~~~~~~~~~~~~~ 268 (393)
+..|+....-+|-..|...-.++|.+.....++++-++-.|+.+++...-...-.--.......+..+..+.........
T Consensus 4 ~~~~~~~~~~~~~~~l~l~~~~~r~~s~~~~~~~~~~~~t~~~~~~~~p~~~~~~~s~~v~~~~~~~~~~~~~~~~~~~p 83 (372)
T KOG1239|consen 4 SNLWFFAISSLQEMRLFLLRPSCRSVSSPGFSGFSVFLRTILVKLTNSPLSQPEASSTSVVATVSPIIEGILLALSSWRP 83 (372)
T ss_pred cccCchhhhhhhhHHHhhhcccccccccCCcccccccceeeccccccCCCCcCcccchHHHHhhchhHHHHHHHhcccCc
Confidence 44444455567778888888888888877777887777778877765422100000001111111111111111111111
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHhh-HHHHHHHHHHccHHHHhHhCCCCCCCC
Q 016206 269 ENGLLGLLAKYYKSYLNLMTLPLFFLGYYIPQGSLVYWVTNS-SFSIVQQLALKHPASRTMLGLPDKVVP 337 (393)
Q Consensus 269 ~~g~~~~~~k~~k~~l~i~~lp~~~~~~~~Paal~LYWitS~-~fsl~Q~~~lr~p~vRk~lglp~~~~~ 337 (393)
....+....+..+.....-...++..+..++..++.||+.++ .-..++.....+|.++..++.-..+..
T Consensus 84 ~~~lq~~l~~~h~~~g~pww~~i~~~t~~ir~~i~~~~~~~~~~~akls~~~~~mp~~~~~l~~a~~~~~ 153 (372)
T KOG1239|consen 84 VATLQNELERLHVYSGLPWWASIVATTVLIRSLITPLLTNSQKNEAKLSKIFPEMPSLGEELGEAAQDNN 153 (372)
T ss_pred hhHHHHHHHHHHHHhCCcchHHHHHhHhhHhhhhhhHHHhhhhHHHHHhhcCcccHHHHHHHHhhhcccc
Confidence 112233333332222111124455667889999999999994 555566666778888887776555443
No 19
>COG1422 Predicted membrane protein [Function unknown]
Probab=39.11 E-value=49 Score=31.14 Aligned_cols=41 Identities=15% Similarity=0.119 Sum_probs=20.4
Q ss_pred chHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCCCCCC
Q 016206 121 PWWTIIVSSTVALRIAL-LPLIVLQLKKIQRIAELLPRLPPPFP 163 (393)
Q Consensus 121 pWw~aIil~Ti~vRl~l-lPl~i~q~r~~~km~~l~Pel~~i~~ 163 (393)
|--++|.++++++-+.+ ++= +-.-...||+++|-++++.|+
T Consensus 45 ~p~lvilV~avi~gl~~~i~~--~~liD~ekm~~~qk~m~efq~ 86 (201)
T COG1422 45 PPHLVILVAAVITGLYITILQ--KLLIDQEKMKELQKMMKEFQK 86 (201)
T ss_pred ccHHHHHHHHHHHHHHHHHHH--HHhccHHHHHHHHHHHHHHHH
Confidence 44456666666655542 221 112244556666666665554
No 20
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=37.28 E-value=4.4e+02 Score=26.57 Aligned_cols=39 Identities=13% Similarity=0.196 Sum_probs=28.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCccccccc
Q 016206 189 SLLWFIASFAIQVPCFLVGVTSIRRMSLDGHPGFDCGGIWW 229 (393)
Q Consensus 189 ~~~~~llp~LiQiPifi~~f~aLR~ma~~~~p~l~~~g~LW 229 (393)
++...+...+.++.++..+|..+|.++.. .|+...+|-|
T Consensus 79 ~~~~~l~~~l~~~a~~~~~~~~~~~l~rp--~Gl~~~HF~w 117 (340)
T PF12794_consen 79 PFSVALGAALLAMALFWLVFEFFRRLLRP--NGLAERHFGW 117 (340)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCeEeccCCC
Confidence 33334455678899999999999999853 3777777766
No 21
>PLN02294 cytochrome c oxidase subunit Vb
Probab=35.57 E-value=95 Score=28.58 Aligned_cols=58 Identities=14% Similarity=0.094 Sum_probs=27.7
Q ss_pred hHHHHHHHHhhhhcCCCCcccCCCCCCC-CCCCCCCCCCCCCc-cccccCcccccccCCCCCCC
Q 016206 3 TAKLLLLQLRRCSYYSHPLSRAPLCHLF-NAPIPTLTQTQTPQ-RAFYFRPHVHLYHSGSADDS 64 (393)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~r~~st~~~~~~ 64 (393)
-||++.||||+-.-. .+..|..+.. .++.| +..+..+. .--.+++-+|.|++.+++.+
T Consensus 2 wRr~~ss~L~~la~~---~~~~s~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 61 (174)
T PLN02294 2 WRRIVSSHLKTLAAS---VVAASPRRTVVATTRP-LYLSRSRSSISASSSVFSRYFSSESADTA 61 (174)
T ss_pred hhhHHHHHHHHHHHh---hcccCccccccccccc-ccccccccccCchhhhhhhcccccccccc
Confidence 378888999993311 1222222222 22111 21111111 00145667899998876554
No 22
>COG1422 Predicted membrane protein [Function unknown]
Probab=30.98 E-value=64 Score=30.39 Aligned_cols=65 Identities=9% Similarity=0.038 Sum_probs=29.2
Q ss_pred HHHHHHHhCCCCCCCCCCCCC---cccHHHHHHHHHHhchhC--CCCchhHHHHHHHHHHHHHHHHHHHHhhh
Q 016206 147 KIQRIAELLPRLPPPFPPPLS---GKRFVDQISLFRREKRAA--GCPSLLWFIASFAIQVPCFLVGVTSIRRM 214 (393)
Q Consensus 147 ~~~km~~l~Pel~~i~~k~~~---~k~~~e~~~L~kk~~~~~--Gc~~~~~~llp~LiQiPifi~~f~aLR~m 214 (393)
-+++|++.|-+.++.+++.-. +|-++++++..+..+... -.+|+.+ -..+.+|+|.-++.-++..
T Consensus 77 ~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~elmk~qfkPM~~---~~v~tI~~F~Wl~~~~~~~ 146 (201)
T COG1422 77 LQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRELMKMQFKPMLY---ISVLTIPFFAWLRWFVGTG 146 (201)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH---HHHHHHHHHHHHHHHHccC
Confidence 334456677766665542111 123455555555544221 1223221 1234555565555555543
No 23
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=24.09 E-value=5.3e+02 Score=24.93 Aligned_cols=70 Identities=9% Similarity=0.052 Sum_probs=36.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--CCCCCCCCCCCCCcccHHHHHH---HHHHhchhCCCCchh
Q 016206 121 PWWTIIVSSTVALRIALLPLIVLQLKKIQRIA-EL--LPRLPPPFPPPLSGKRFVDQIS---LFRREKRAAGCPSLL 191 (393)
Q Consensus 121 pWw~aIil~Ti~vRl~llPl~i~q~r~~~km~-~l--~Pel~~i~~k~~~~k~~~e~~~---L~kk~~~~~Gc~~~~ 191 (393)
.-..+++++.++.+....|........ ++.+ .. .|+-..+.++-+++....|+.+ -.|++.+.-+|++|+
T Consensus 150 ~~a~~~i~~~l~~~~l~~~~~~~~~~~-~~~~~~~~~p~~rr~LteeEy~~q~~~eT~kaL~eLr~~c~sp~~~~W~ 225 (249)
T PF10225_consen 150 EFAFAAIILLLLWKSLYYPISWLKRVR-RKYRRRFTSPPKRRLLTEEEYEEQGERETRKALEELREYCNSPDCNSWK 225 (249)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHH-HHHhheecCCCccccccccchhhcchHhHHHHHHHHHHHhCCCCCCcch
Confidence 334555566666666666666543222 2222 22 4556666665554433444444 444444445787775
No 24
>PF15050 SCIMP: SCIMP protein
Probab=22.75 E-value=70 Score=27.78 Aligned_cols=34 Identities=21% Similarity=0.201 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 016206 124 TIIVSSTVALRIALLPLIVLQLKKIQRIAELLPR 157 (393)
Q Consensus 124 ~aIil~Ti~vRl~llPl~i~q~r~~~km~~l~Pe 157 (393)
.+||++.+.+-++++-+.-++.|..+|-...+|.
T Consensus 14 VaII~vS~~lglIlyCvcR~~lRqGkkweiakp~ 47 (133)
T PF15050_consen 14 VAIILVSVVLGLILYCVCRWQLRQGKKWEIAKPL 47 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccceeccch
Confidence 5677777777778887777888877776655554
Done!