Query 016206
Match_columns 393
No_of_seqs 176 out of 1169
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 09:41:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016206.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016206hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pyv_A ATP synthase beta chain 25.4 24 0.00081 24.2 1.0 30 1-32 1-30 (54)
2 1z65_A PRPLP, prion-like prote 18.8 67 0.0023 20.0 2.0 16 118-134 5-20 (30)
3 1v66_A Protein inhibitor of ac 13.5 96 0.0033 22.9 2.1 17 369-385 34-50 (65)
4 4h7y_A Dual specificity protei 10.0 1.2E+02 0.0041 26.4 1.9 17 369-385 127-143 (161)
5 4ea3_A Fusion protein of nocic 9.6 9.5E+02 0.033 22.4 8.6 20 243-262 298-317 (434)
6 2qzg_A Conserved uncharacteriz 9.1 1.7E+02 0.0056 23.2 2.2 28 363-390 6-33 (94)
7 3ff5_A PEX14P, peroxisomal bio 8.2 1.8E+02 0.0063 20.6 1.9 17 367-383 7-23 (54)
8 2f40_A Hypothetical protein PF 8.0 47 0.0016 26.1 -1.4 19 360-378 69-87 (96)
9 2lk9_A Bone marrow stromal ant 7.9 3.5E+02 0.012 17.4 2.9 28 120-148 5-32 (35)
10 2xzm_O RPS13E; ribosome, trans 7.9 4.4E+02 0.015 22.6 4.5 36 350-385 11-48 (153)
No 1
>1pyv_A ATP synthase beta chain, mitochondrial precursor; hydrolase; NMR {Nicotiana plumbaginifolia} SCOP: j.36.4.1
Probab=25.37 E-value=24 Score=24.24 Aligned_cols=30 Identities=20% Similarity=0.021 Sum_probs=19.2
Q ss_pred ChhHHHHHHHHhhhhcCCCCcccCCCCCCCCC
Q 016206 1 MATAKLLLLQLRRCSYYSHPLSRAPLCHLFNA 32 (393)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (393)
||.+|+|-|.||.+.-- ---.+|++.-++-
T Consensus 1 masrrllasllrqsaqr--ggglisrslgnsi 30 (54)
T 1pyv_A 1 MASRRLLASLLRQSAQR--GGGLISRSLGNSI 30 (54)
T ss_dssp -CCSHHHHHHHHHHHTT--SSCSSSSTGGGGT
T ss_pred CchHHHHHHHHHHHHHh--CCceeehhhcccC
Confidence 89999999999996421 2334555555553
No 2
>1z65_A PRPLP, prion-like protein doppel, doppelganger; transmembrane helix, DHPC, mouse doppel, unknown function; NMR {Synthetic}
Probab=18.82 E-value=67 Score=20.03 Aligned_cols=16 Identities=31% Similarity=0.810 Sum_probs=11.7
Q ss_pred cCCchHHHHHHHHHHHH
Q 016206 118 TGFPWWTIIVSSTVALR 134 (393)
Q Consensus 118 tGlpWw~aIil~Ti~vR 134 (393)
.| -||++|+..-++--
T Consensus 5 LG-~~wlai~c~LLfs~ 20 (30)
T 1z65_A 5 LG-TWWVAILCMLLASH 20 (30)
T ss_dssp CS-SHHHHHHHHHHHHH
T ss_pred hh-hhHHHHHHHHHHhh
Confidence 45 79999988766543
No 3
>1v66_A Protein inhibitor of activated STAT protein 1; four helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=13.49 E-value=96 Score=22.92 Aligned_cols=17 Identities=24% Similarity=0.425 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhhhcCCC
Q 016206 369 PKELIALSVKFLSKGDK 385 (393)
Q Consensus 369 ~~~~~~~~~~~~~~~~~ 385 (393)
-.||++||++.|++++.
T Consensus 34 K~eL~~RaL~LL~~~~s 50 (65)
T 1v66_A 34 KHELLTKALHLLKAGCS 50 (65)
T ss_dssp HHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 36999999999999984
No 4
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=9.96 E-value=1.2e+02 Score=26.36 Aligned_cols=17 Identities=24% Similarity=0.501 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhhhcCCC
Q 016206 369 PKELIALSVKFLSKGDK 385 (393)
Q Consensus 369 ~~~~~~~~~~~~~~~~~ 385 (393)
|+|+++.|+++|+.|.+
T Consensus 127 ~~~~le~a~~nl~~~~~ 143 (161)
T 4h7y_A 127 PLEMLEIALRNLNLQKK 143 (161)
T ss_dssp CHHHHHHHHHHHHTTCS
T ss_pred cHHHHHHHHHhhhcCCC
Confidence 58999999999999976
No 5
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR network, structural genomics, GPCR membrane 7TM NOP ORL1 cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo sapiens}
Probab=9.59 E-value=9.5e+02 Score=22.36 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 016206 243 SIFPVLMAGLHYTNVQLSFG 262 (393)
Q Consensus 243 ~ILPil~~~l~~l~~~~~~~ 262 (393)
+++|+++.+..|..+....+
T Consensus 298 ~~ip~~ii~~~y~~I~~~l~ 317 (434)
T 4ea3_A 298 FIVPVLVISVCYSLMIRRLR 317 (434)
T ss_dssp THHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 56788777666666554444
No 6
>2qzg_A Conserved uncharacterized archaeal protein; unknown function protein, structu genomics, PSI-2, protein structure initiative; 2.09A {Methanococcus maripaludis S2} SCOP: a.29.14.1
Probab=9.08 E-value=1.7e+02 Score=23.23 Aligned_cols=28 Identities=18% Similarity=0.340 Sum_probs=23.8
Q ss_pred CCCCCCHHHHHHHHHHhhhcCCCCCCCC
Q 016206 363 SVENLTPKELIALSVKFLSKGDKERPIP 390 (393)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (393)
|......||.+.++++.|+.=-+|.++|
T Consensus 6 ~~~~~e~e~~ik~~~~~L~~I~~D~sVP 33 (94)
T 2qzg_A 6 SAKKLSPADKLKNISSMLEEIVEDTTVP 33 (94)
T ss_dssp -CCCCCHHHHHHHHHHHHHHHHTCTTSC
T ss_pred hhhhcchHHHHHHHHHHHHHHHcCCCCC
Confidence 4456788999999999999999998887
No 7
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=8.25 E-value=1.8e+02 Score=20.60 Aligned_cols=17 Identities=41% Similarity=0.471 Sum_probs=14.1
Q ss_pred CCHHHHHHHHHHhhhcC
Q 016206 367 LTPKELIALSVKFLSKG 383 (393)
Q Consensus 367 ~~~~~~~~~~~~~~~~~ 383 (393)
..++||++.|+.+|+.-
T Consensus 7 ~~Re~li~~Av~FL~dp 23 (54)
T 3ff5_A 7 EFREPLIATAVKFLQNS 23 (54)
T ss_dssp HHHHHHHHHHHHHHHCT
T ss_pred ccHHHHHHHHHHHhCCh
Confidence 35799999999999753
No 8
>2f40_A Hypothetical protein PF1455; protein structure prediction, residual dipolar couplings, PY furious, simulated annealing, structural genomics; NMR {Pyrococcus furiosus} SCOP: i.11.1.1
Probab=8.04 E-value=47 Score=26.14 Aligned_cols=19 Identities=32% Similarity=0.277 Sum_probs=10.8
Q ss_pred cCCCCCCCCHHHHHHHHHH
Q 016206 360 LKISVENLTPKELIALSVK 378 (393)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~ 378 (393)
.-|..++++++|||++|+-
T Consensus 69 EVi~ek~lTv~ELIe~SmS 87 (96)
T 2f40_A 69 EVIEEKEITLQELIEGSLS 87 (96)
T ss_dssp CSSCCCCCCCSSCC-----
T ss_pred hhcccccccHHHHHHHhcc
Confidence 4456678899999988863
No 9
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=7.90 E-value=3.5e+02 Score=17.36 Aligned_cols=28 Identities=21% Similarity=0.204 Sum_probs=15.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016206 120 FPWWTIIVSSTVALRIALLPLIVLQLKKI 148 (393)
Q Consensus 120 lpWw~aIil~Ti~vRl~llPl~i~q~r~~ 148 (393)
++-|..+++.-+++- +..|+.++..|..
T Consensus 5 L~lg~Gvl~LLviV~-LgV~LI~f~~kAn 32 (35)
T 2lk9_A 5 LLLGIGILVLLIIVI-LGVPLIIFTIKKK 32 (35)
T ss_dssp CHHHHHHHHHHHHHH-HHHHHHHHC----
T ss_pred eeecccHHHHHHHHH-hcchheEEeeecc
Confidence 555666666666663 5677777766643
No 10
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=7.88 E-value=4.4e+02 Score=22.59 Aligned_cols=36 Identities=28% Similarity=0.305 Sum_probs=26.8
Q ss_pred ccccCCcccccCCCCC--CCCHHHHHHHHHHhhhcCCC
Q 016206 350 ETTLESPAKQLKISVE--NLTPKELIALSVKFLSKGDK 385 (393)
Q Consensus 350 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 385 (393)
++...+-.+.+.-+|+ +.++||+.++-++.-++|..
T Consensus 11 kG~S~S~~P~~~~~P~W~~~~~eeVe~~I~klakkG~t 48 (153)
T 2xzm_O 11 KGISGSALPFKRRSPKWLHMTPSTVVDLSVKLAKKGLT 48 (153)
T ss_dssp CCCCCCCCCSCCSCCSSCCCCHHHHHHHHHHHHHTTCC
T ss_pred CCccCCCCCCCCCCCccccCCHHHHHHHHHHHHHCCCC
Confidence 3444455556666666 78999999999999999874
Done!