Query 016206
Match_columns 393
No_of_seqs 176 out of 1169
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 09:41:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016206.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016206hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1cuka1 a.5.1.1 (A:156-203) DN 14.5 39 0.0029 21.7 1.9 19 361-379 28-46 (48)
2 d2v5za2 d.16.1.5 (A:290-401) M 11.9 31 0.0023 24.7 0.8 27 364-390 63-89 (112)
3 d2dw4a3 d.16.1.5 (A:655-763) L 11.0 66 0.0048 22.4 2.5 27 365-391 62-88 (109)
4 d1b5qa2 d.16.1.5 (A:294-405) P 10.0 70 0.0051 22.5 2.4 26 365-390 65-90 (112)
5 d1v66a_ a.140.2.1 (A:) p53 bin 10.0 69 0.005 21.9 2.1 18 368-385 33-50 (65)
6 d1yara1 d.153.1.4 (A:13-233) P 5.4 1.7E+02 0.012 23.5 2.9 23 365-387 170-192 (221)
7 d1u19a_ f.13.1.2 (A:) Rhodopsi 4.3 6.4E+02 0.046 20.0 6.2 10 319-328 307-316 (348)
8 d2qzga1 a.29.14.1 (A:4-91) Unc 4.1 2E+02 0.014 20.6 2.0 25 366-390 3-27 (88)
9 d1v54d_ f.23.1.1 (D:) Mitochon 4.1 1.7E+02 0.013 22.8 1.8 50 171-220 50-105 (144)
10 d1s3aa1 c.47.1.22 (A:15-99) NA 3.9 1.9E+02 0.014 19.9 1.8 26 357-382 58-83 (85)
No 1
>d1cuka1 a.5.1.1 (A:156-203) DNA helicase RuvA subunit, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=14.48 E-value=39 Score=21.70 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=15.6
Q ss_pred CCCCCCCCHHHHHHHHHHh
Q 016206 361 KISVENLTPKELIALSVKF 379 (393)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~ 379 (393)
++..++.|.||||-.|++.
T Consensus 28 ~i~~~~~s~E~lIk~ALk~ 46 (48)
T d1cuka1 28 KIARPDASSETLIREALRA 46 (48)
T ss_dssp HSCCSSCCHHHHHHHHHHT
T ss_pred HhcCCCCCHHHHHHHHHHH
Confidence 4555789999999999885
No 2
>d2v5za2 d.16.1.5 (A:290-401) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.85 E-value=31 Score=24.69 Aligned_cols=27 Identities=15% Similarity=0.031 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHHHhhhcCCCCCCCC
Q 016206 364 VENLTPKELIALSVKFLSKGDKERPIP 390 (393)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (393)
.|+++.+|+++.+++.|++-+.+..||
T Consensus 63 ~~~ls~~e~~~~~l~~L~~~~g~~~~~ 89 (112)
T d2v5za2 63 LARLTKEERLKKLCELYAKVLGSLEAL 89 (112)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHTCGGGG
T ss_pred HHhCCHHHHHHHHHHHHHHHhCccccC
Confidence 368899999999999999876665554
No 3
>d2dw4a3 d.16.1.5 (A:655-763) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.03 E-value=66 Score=22.41 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCCCCCC
Q 016206 365 ENLTPKELIALSVKFLSKGDKERPIPL 391 (393)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (393)
|+++.+|+++.+++.|++-..+.++|-
T Consensus 62 ~~l~~~~~~~~~l~~L~~~~~~~~~~~ 88 (109)
T d2dw4a3 62 ENISDDVIVGRCLAILKGIFGSSAVPQ 88 (109)
T ss_dssp TTSCHHHHHHHHHHHHHHHHCTTTCCC
T ss_pred HhcCHHHHHHHHHHHHHHHhCccccCc
Confidence 578999999999999988766666653
No 4
>d1b5qa2 d.16.1.5 (A:294-405) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}
Probab=10.00 E-value=70 Score=22.46 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCCCCC
Q 016206 365 ENLTPKELIALSVKFLSKGDKERPIP 390 (393)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (393)
|+++.+|+++.+++.|++-+.+..+|
T Consensus 65 ~~l~~~~~~~~~l~~L~~~~~~~~~~ 90 (112)
T d1b5qa2 65 EQQSDEQTKAEIMQVLRKMFPGKDVP 90 (112)
T ss_dssp HTSCHHHHHHHHHHHHHHHCTTSCCC
T ss_pred HhCCHHHHHHHHHHHHHHHhCccccc
Confidence 57899999999999999877666665
No 5
>d1v66a_ a.140.2.1 (A:) p53 binding domain of protein inhibitor of activated STAT protein 1, PIAS-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.98 E-value=69 Score=21.93 Aligned_cols=18 Identities=22% Similarity=0.397 Sum_probs=14.8
Q ss_pred CHHHHHHHHHHhhhcCCC
Q 016206 368 TPKELIALSVKFLSKGDK 385 (393)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~ 385 (393)
+-.||.+||++.|++++.
T Consensus 33 rK~eL~~RaL~LL~~~~~ 50 (65)
T d1v66a_ 33 RKHELLTKALHLLKAGCS 50 (65)
T ss_dssp CHHHHHHHHHHHHHTCCC
T ss_pred cHHHHHHHHHHHHhcCCC
Confidence 346899999999998764
No 6
>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit (non-catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=5.45 E-value=1.7e+02 Score=23.54 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=20.1
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCC
Q 016206 365 ENLTPKELIALSVKFLSKGDKER 387 (393)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~ 387 (393)
++++.||.++.+++-|+++.+|.
T Consensus 170 ~~ms~~ea~~la~~~l~~~~~~~ 192 (221)
T d1yara1 170 ENLPEKEAVTLGIKALKSSLEEG 192 (221)
T ss_dssp TTCCHHHHHHHHHHHHHHTSCSS
T ss_pred ccccHHHHHHHHHHHHHHHHhcc
Confidence 58999999999999999886654
No 7
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.27 E-value=6.4e+02 Score=20.03 Aligned_cols=10 Identities=10% Similarity=0.085 Sum_probs=5.4
Q ss_pred HHccHHHHhH
Q 016206 319 ALKHPASRTM 328 (393)
Q Consensus 319 ~lr~p~vRk~ 328 (393)
.++++.+|+.
T Consensus 307 ~~~~~~fR~~ 316 (348)
T d1u19a_ 307 IMMNKQFRNC 316 (348)
T ss_dssp HHTCHHHHHH
T ss_pred HhcCHHHHHH
Confidence 3456666543
No 8
>d2qzga1 a.29.14.1 (A:4-91) Uncharacterized protein MMP1188 {Methanococcus maripaludis [TaxId: 39152]}
Probab=4.11 E-value=2e+02 Score=20.62 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHHHhhhcCCCCCCCC
Q 016206 366 NLTPKELIALSVKFLSKGDKERPIP 390 (393)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (393)
+.+++|=+.++++.|+.=.+|..+|
T Consensus 3 ~~~~~e~i~~~~~~L~qI~~D~sVP 27 (88)
T d2qzga1 3 KLSPADKLKNISSMLEEIVEDTTVP 27 (88)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCTTSC
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCC
Confidence 5688999999999999888888877
No 9
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.07 E-value=1.7e+02 Score=22.78 Aligned_cols=50 Identities=8% Similarity=0.063 Sum_probs=30.8
Q ss_pred HHHHHHHHHHh-c---h--hCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 016206 171 FVDQISLFRRE-K---R--AAGCPSLLWFIASFAIQVPCFLVGVTSIRRMSLDGHP 220 (393)
Q Consensus 171 ~~e~~~L~kk~-~---~--~~Gc~~~~~~llp~LiQiPifi~~f~aLR~ma~~~~p 220 (393)
.+|..++|+-. + . ..+..-|+..+...++-+-+-+.+|..+|..+..+.|
T Consensus 50 ~eEKkalYrisF~~t~ae~~~p~gewK~v~g~~~~~i~~s~~i~~~~r~~v~p~~P 105 (144)
T d1v54d_ 50 IDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIP 105 (144)
T ss_dssp HHHHHHHHHHHCSSCHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHhccccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 56777787743 1 1 2344457776666666676777777777876544433
No 10
>d1s3aa1 c.47.1.22 (A:15-99) NADH-ubiquinone oxidoreductase b8 subunit, CI-B8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.90 E-value=1.9e+02 Score=19.90 Aligned_cols=26 Identities=12% Similarity=0.266 Sum_probs=21.5
Q ss_pred ccccCCCCCCCCHHHHHHHHHHhhhc
Q 016206 357 AKQLKISVENLTPKELIALSVKFLSK 382 (393)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (393)
-+++.|+.+|.+.+|++++-.+.+++
T Consensus 58 G~e~~i~l~n~~~~eI~~~l~~L~~~ 83 (85)
T d1s3aa1 58 GQETNVPLNNFSADQVTRALENVLSG 83 (85)
T ss_dssp CCEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHcC
Confidence 35788999999999999887777665
Done!