BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016207
(393 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UAS|A Chain A, Crystal Structure Of Rice Alpha-Galactosidase
Length = 362
Score = 414 bits (1064), Expect = e-116, Method: Compositional matrix adjust.
Identities = 198/281 (70%), Positives = 225/281 (80%), Gaps = 1/281 (0%)
Query: 83 LNNGLASTPQMGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRD 142
NGL TPQMGWNSWN F C I+E II+ETADALV+TGLA+LGY +VNIDDCW+ RD
Sbjct: 1 FENGLGRTPQMGWNSWNHFYCGINEQIIRETADALVNTGLAKLGYQYVNIDDCWAEYSRD 60
Query: 143 LKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQVR-PGSLFHEKDDAPLFA 201
+G VP+ TFPSGIKALADYVH KGLKLGIYSDAG TC + PGSL HE+ D FA
Sbjct: 61 SQGNFVPNRQTFPSGIKALADYVHAKGLKLGIYSDAGSQTCSNKMPGSLDHEEQDVKTFA 120
Query: 202 SWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYSLCEWGVDDPALWAGKVGNSW 261
SWGVDYLKYDNC + G +RY M +A+ G +IF+SLCEWG ++PA WAG++GNSW
Sbjct: 121 SWGVDYLKYDNCNDAGRSVMERYTRMSNAMKTYGKNIFFSLCEWGKENPATWAGRMGNSW 180
Query: 262 RTTGDINDTWASMTSIADINDKWASYAGPGGWNDPDMLEVGNGGMSYQEYRAHFSIWALM 321
RTTGDI D W SMTS AD ND+WA+YAGPGGWNDPDMLEVGNGGMS EYR+HFSIWAL
Sbjct: 181 RTTGDIADNWGSMTSRADENDQWAAYAGPGGWNDPDMLEVGNGGMSEAEYRSHFSIWALA 240
Query: 322 KAPLLIGCDVRNMTAETFEILSNKEVIAVNQDPLGVQGRKV 362
KAPLLIGCDVR+M+ +T ILSN EVIAVNQD LGVQG+KV
Sbjct: 241 KAPLLIGCDVRSMSQQTKNILSNSEVIAVNQDSLGVQGKKV 281
>pdb|3A5V|A Chain A, Crystal Structure Of Alpha-Galactosidase I From
Mortierella Vinacea
Length = 397
Score = 274 bits (701), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 144/295 (48%), Positives = 183/295 (62%), Gaps = 25/295 (8%)
Query: 84 NNGLASTPQMGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDL 143
NNGLA TPQMGWN+WN + CN+ E +I + A A+ S+GL +LGY++V IDDCW R+
Sbjct: 2 NNGLAITPQMGWNTWNKYGCNVDEQLILDAAKAIASSGLKDLGYNYVIIDDCWQKNERES 61
Query: 144 KGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASW 203
L+ D FP GIK L D +H GLK GIYS AG TC SL +E DA +A W
Sbjct: 62 SKTLLADPTKFPRGIKPLVDDIHNLGLKAGIYSSAGTLTCGGHIASLGYEDIDAKTWAKW 121
Query: 204 GVDYLKYDNCFNLGIE--PK---KRYPPMRDALNETGCSIFYSLCEWGVDDPALWAGKVG 258
G+DYLKYDNC+N G PK RY M +ALN+TG + YSLC WG D P +A +
Sbjct: 122 GIDYLKYDNCYNQGQSGTPKLSYDRYKAMGNALNKTGRPMLYSLCNWGEDGPWNFASTIS 181
Query: 259 NSWRTTGDINDTW--------------------ASMTSIADINDKWASYAGPGGWNDPDM 298
NSWR +GD+ D + S+ +I + + A GGWND DM
Sbjct: 182 NSWRISGDVYDNFNRPDPACPCTTYDCVLAGFRCSVMNIINKAVAVSQKARSGGWNDLDM 241
Query: 299 LEVGNGGMSYQEYRAHFSIWALMKAPLLIGCDVRNMTAETFEILSNKEVIAVNQD 353
LEVGNGGM+ +EYR H++IWA +K+PL++G DV N+T T EI+ NKEVIAVNQD
Sbjct: 242 LEVGNGGMNQEEYRVHYTIWAALKSPLILGNDVTNITNTTKEIIMNKEVIAVNQD 296
>pdb|1KTB|A Chain A, The Structure Of Alpha-N-Acetylgalactosaminidase
pdb|1KTC|A Chain A, The Structure Of Alpha-N-Acetylgalactosaminidase
Length = 405
Score = 272 bits (696), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 142/303 (46%), Positives = 181/303 (59%), Gaps = 23/303 (7%)
Query: 83 LNNGLASTPQMGWNSWNFFACN----------ISETIIKETADALVSTGLAELGYDHVNI 132
L NGLA TP MGW +W F CN ISE + E AD + G ELGY ++NI
Sbjct: 1 LENGLARTPPMGWLAWERFRCNVNCREDPRQCISEMLFMEMADRIAEDGWRELGYKYINI 60
Query: 133 DDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFH 192
DDCW++ RD +G+LVPD FP GIKALADYVH +GLKLGIY D G TC PG+
Sbjct: 61 DDCWAAKQRDAEGRLVPDPERFPRGIKALADYVHARGLKLGIYGDLGRLTCGGYPGTTLD 120
Query: 193 E-KDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYSLCEWGVDDPA 251
+ DA FA WGVD LK D C++ G E + YP M ALN TG I YS C W
Sbjct: 121 RVEQDAQTFAEWGVDMLKLDGCYSSGKEQAQGYPQMARALNATGRPIVYS-CSWPAYQGG 179
Query: 252 L-------WAGKVGNSWRTTGDINDTWASMTSIAD----INDKWASYAGPGGWNDPDMLE 300
L G++ N WR DI D+W S+ SI D D +AGPG WNDPDML
Sbjct: 180 LPPKVNYTLLGEICNLWRNYDDIQDSWDSVLSIVDWFFTNQDVLQPFAGPGHWNDPDMLI 239
Query: 301 VGNGGMSYQEYRAHFSIWALMKAPLLIGCDVRNMTAETFEILSNKEVIAVNQDPLGVQGR 360
+GN G+SY++ R+ ++W +M APLL+ D+R ++ +IL N+ +I +NQDPLG+QGR
Sbjct: 240 IGNFGLSYEQSRSQMALWTIMAAPLLMSTDLRTISPSAKKILQNRLMIQINQDPLGIQGR 299
Query: 361 KVF 363
++
Sbjct: 300 RII 302
>pdb|3LRK|A Chain A, Structure Of Alfa-Galactosidase (Mel1) From Saccharomyces
Cerevisiae
pdb|3LRL|A Chain A, Structure Of Alfa-Galactosidase (Mel1) From Saccharomyces
Cerevisiae With Melibiose
Length = 479
Score = 256 bits (653), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 137/312 (43%), Positives = 187/312 (59%), Gaps = 28/312 (8%)
Query: 78 YGILQLNNGLASTPQMGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWS 137
+G+ NGL TPQMGW++WN FAC++SE ++ +TAD + GL ++GY ++ +DDCWS
Sbjct: 17 FGVSPSYNGLGLTPQMGWDNWNTFACDVSEQLLLDTADRISDLGLKDMGYKYIILDDCWS 76
Query: 138 SPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDA 197
S RD G LV D FP+G+ +AD++H G+YS AG +TC PGSL E++DA
Sbjct: 77 SG-RDSDGFLVADEQKFPNGMGHVADHLHNNSFLFGMYSSAGEYTCAGYPGSLGREEEDA 135
Query: 198 PLFASWGVDYLKYDNCFNLGI--EPK---KRYPPMRDALNETGCSIFYSLCEWGVDDPAL 252
FA+ VDYLKYDNC+N G P+ RY M DALN+TG +FYSLC WG D
Sbjct: 136 QFFANNRVDYLKYDNCYNKGQFGTPEISYHRYKAMSDALNKTGRPVFYSLCNWGQDLTFY 195
Query: 253 WAGKVGNSWRTTGDINDTWAS-------------------MTSIADINDKWASY---AGP 290
W + NSWR +GD+ + SI +I +K A AG
Sbjct: 196 WGSGIANSWRMSGDVTAEFTRPDSRCPCDGDEYDCKYAGFHCSIMNILNKAAPMGQNAGV 255
Query: 291 GGWNDPDMLEVGNGGMSYQEYRAHFSIWALMKAPLLIGCDVRNMTAETFEILSNKEVIAV 350
GGWND D LEVG G ++ E +AHFS+WA++K+PL+IG +V N+ A ++ I S VIA+
Sbjct: 256 GGWNDLDNLEVGVGNLTDDEEKAHFSMWAMVKSPLIIGANVNNLKASSYSIYSQASVIAI 315
Query: 351 NQDPLGVQGRKV 362
NQD G+ +V
Sbjct: 316 NQDSNGIPATRV 327
>pdb|3LRM|A Chain A, Structure Of Alfa-Galactosidase From Saccharomyces
Cerevisiae With Raffinose
pdb|3LRM|B Chain B, Structure Of Alfa-Galactosidase From Saccharomyces
Cerevisiae With Raffinose
pdb|3LRM|C Chain C, Structure Of Alfa-Galactosidase From Saccharomyces
Cerevisiae With Raffinose
pdb|3LRM|D Chain D, Structure Of Alfa-Galactosidase From Saccharomyces
Cerevisiae With Raffinose
Length = 479
Score = 253 bits (645), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 136/312 (43%), Positives = 186/312 (59%), Gaps = 28/312 (8%)
Query: 78 YGILQLNNGLASTPQMGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWS 137
+G+ NGL TPQMGW++WN FAC++SE ++ +TAD + GL ++GY ++ +DDCWS
Sbjct: 17 FGVSPSYNGLGLTPQMGWDNWNTFACDVSEQLLLDTADRISDLGLKDMGYKYIILDDCWS 76
Query: 138 SPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDA 197
S RD G LV D FP+G+ +AD++H G+YS AG +TC PGSL E++DA
Sbjct: 77 SG-RDSDGFLVADEQKFPNGMGHVADHLHNNSFLFGMYSSAGEYTCAGYPGSLGREEEDA 135
Query: 198 PLFASWGVDYLKYDNCFNLGI--EPK---KRYPPMRDALNETGCSIFYSLCEWGVDDPAL 252
FA+ VDYLKY NC+N G P+ RY M DALN+TG +FYSLC WG D
Sbjct: 136 QFFANNRVDYLKYANCYNKGQFGTPEISYHRYKAMSDALNKTGRPVFYSLCNWGQDLTFY 195
Query: 253 WAGKVGNSWRTTGDINDTWAS-------------------MTSIADINDKWASY---AGP 290
W + NSWR +GD+ + SI +I +K A AG
Sbjct: 196 WGSGIANSWRMSGDVTAEFTRPDSRCPCDGDEYDCKYAGFHCSIMNILNKAAPMGQNAGV 255
Query: 291 GGWNDPDMLEVGNGGMSYQEYRAHFSIWALMKAPLLIGCDVRNMTAETFEILSNKEVIAV 350
GGWND D LEVG G ++ E +AHFS+WA++K+PL+IG +V N+ A ++ I S VIA+
Sbjct: 256 GGWNDLDNLEVGVGNLTDDEEKAHFSMWAMVKSPLIIGANVNNLKASSYSIYSQASVIAI 315
Query: 351 NQDPLGVQGRKV 362
NQD G+ +V
Sbjct: 316 NQDSNGIPATRV 327
>pdb|1R46|A Chain A, Structure Of Human Alpha-galactosidase
pdb|1R46|B Chain B, Structure Of Human Alpha-galactosidase
pdb|1R47|A Chain A, Structure Of Human Alpha-Galactosidase
pdb|1R47|B Chain B, Structure Of Human Alpha-Galactosidase
pdb|3GXN|A Chain A, Crystal Structure Of Apo Alpha-Galactosidase A At Ph 4.5
pdb|3GXN|B Chain B, Crystal Structure Of Apo Alpha-Galactosidase A At Ph 4.5
pdb|3GXP|A Chain A, Crystal Structure Of Acid-alpha-galactosidase A Complexed
With Galactose At Ph 4.5
pdb|3GXP|B Chain B, Crystal Structure Of Acid-alpha-galactosidase A Complexed
With Galactose At Ph 4.5
pdb|3GXT|A Chain A, Crystal Structure Of Alpha-Galactosidase A At Ph 4.5
Complexed With 1- Deoxygalactonijirimycin
pdb|3GXT|B Chain B, Crystal Structure Of Alpha-Galactosidase A At Ph 4.5
Complexed With 1- Deoxygalactonijirimycin
pdb|3HG2|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 1. Empty
Active Site
pdb|3HG2|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 1. Empty
Active Site
pdb|3HG4|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 3. Covalent
Intermediate
pdb|3HG4|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 3. Covalent
Intermediate
pdb|3HG5|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 4. Product
Bound
pdb|3HG5|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 4. Product
Bound
pdb|3S5Y|A Chain A, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3S5Y|B Chain B, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3S5Z|A Chain A, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3S5Z|B Chain B, Pharmacological Chaperoning In Human Alpha-Galactosidase
Length = 398
Score = 245 bits (625), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 137/308 (44%), Positives = 181/308 (58%), Gaps = 36/308 (11%)
Query: 83 LNNGLASTPQMGWNSWNFFACN----------ISETIIKETADALVSTGLAELGYDHVNI 132
L+NGLA TP MGW W F CN ISE + E A+ +VS G + GY+++ I
Sbjct: 1 LDNGLARTPTMGWLHWERFMCNLDCQEEPDSCISEKLFMEMAELMVSEGWKDAGYEYLCI 60
Query: 133 DDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFH 192
DDCW +P RD +G+L D FP GI+ LA+YVH KGLKLGIY+D G TC PGS +
Sbjct: 61 DDCWMAPQRDSEGRLQADPQRFPHGIRQLANYVHSKGLKLGIYADVGNKTCAGFPGSFGY 120
Query: 193 EKDDAPLFASWGVDYLKYDNCFNLGIEP-KKRYPPMRDALNETGCSIFYSLCEWGVDDPA 251
DA FA WGVD LK+D C+ +E Y M ALN TG SI YS CEW +
Sbjct: 121 YDIDAQTFADWGVDLLKFDGCYCDSLENLADGYKHMSLALNRTGRSIVYS-CEWPL---Y 176
Query: 252 LWA---------GKVGNSWRTTGDINDTWASMTSIADINDKWASY--------AGPGGWN 294
+W + N WR DI+D+W S+ SI D W S+ AGPGGWN
Sbjct: 177 MWPFQKPNYTEIRQYCNHWRNFADIDDSWKSIKSILD----WTSFNQERIVDVAGPGGWN 232
Query: 295 DPDMLEVGNGGMSYQEYRAHFSIWALMKAPLLIGCDVRNMTAETFEILSNKEVIAVNQDP 354
DPDML +GN G+S+ + ++WA+M APL + D+R+++ + +L +K+VIA+NQDP
Sbjct: 233 DPDMLVIGNFGLSWNQQVTQMALWAIMAAPLFMSNDLRHISPQAKALLQDKDVIAINQDP 292
Query: 355 LGVQGRKV 362
LG QG ++
Sbjct: 293 LGKQGYQL 300
>pdb|3LX9|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LX9|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXA|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXA|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXB|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXB|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXC|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXC|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
Length = 404
Score = 243 bits (620), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 138/309 (44%), Positives = 181/309 (58%), Gaps = 38/309 (12%)
Query: 83 LNNGLASTPQMGWNSWNFFACN----------ISETIIKETADALVSTGLAELGYDHVNI 132
L+NGLA TP MGW W F CN ISE + E A+ +VS G + GY+++ I
Sbjct: 1 LDNGLARTPTMGWLHWERFMCNLDCQEEPDSCISEKLFMEMAELMVSEGWKDAGYEYLCI 60
Query: 133 DDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFH 192
DDCW +P RD +G+L D FP GI+ LA+YVH KGLKLGIY+D G TC PGS +
Sbjct: 61 DDCWMAPQRDSEGRLQADPQRFPHGIRQLANYVHSKGLKLGIYADVGNKTCAGFPGSFGY 120
Query: 193 EKDDAPLFASWGVDYLKYDNCFNLGIEP-KKRYPPMRDALNETGCSIFYSLCEWGVDDPA 251
DA FA WGVD LK+D C+ +E Y M ALN TG SI YS C W PA
Sbjct: 121 YDIDAQTFADWGVDLLKFDGCYCDSLENLADGYKHMSLALNRTGRSIVYS-CSW----PA 175
Query: 252 -LWA---------GKVGNSWRTTGDINDTWASMTSIADINDKWASY--------AGPGGW 293
+W + N WR DI+D+W S+ SI D W S+ AGPGGW
Sbjct: 176 YMWPFQKPNYTEIRQYCNHWRNFADIDDSWKSIKSILD----WTSFNQERIVDVAGPGGW 231
Query: 294 NDPDMLEVGNGGMSYQEYRAHFSIWALMKAPLLIGCDVRNMTAETFEILSNKEVIAVNQD 353
NDPDML +GN G+S+ + ++WA+M APL + D+R+++ + +L +K+VIA+NQD
Sbjct: 232 NDPDMLVIGNFGLSWNQQVTQMALWAIMAAPLFMSNDLRHISPQAKALLQDKDVIAINQD 291
Query: 354 PLGVQGRKV 362
PLG QG ++
Sbjct: 292 PLGKQGYQL 300
>pdb|3H53|A Chain A, Crystal Structure Of Human Alpha-N-Acetylgalactosaminidase
pdb|3H53|B Chain B, Crystal Structure Of Human Alpha-N-Acetylgalactosaminidase
pdb|3H54|A Chain A, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase,Complex With Galnac
pdb|3H54|B Chain B, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase,Complex With Galnac
pdb|3H55|A Chain A, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase, Complex With Galactose
pdb|3H55|B Chain B, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase, Complex With Galactose
pdb|3IGU|A Chain A, Crystal Structure Of Human
Alpha-n-acetylgalactosaminidase, Covalent Intermediate
pdb|3IGU|B Chain B, Crystal Structure Of Human
Alpha-n-acetylgalactosaminidase, Covalent Intermediate
pdb|4DO4|A Chain A, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO4|B Chain B, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO5|A Chain A, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO5|B Chain B, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO6|A Chain A, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO6|B Chain B, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
Length = 400
Score = 242 bits (618), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 133/302 (44%), Positives = 173/302 (57%), Gaps = 24/302 (7%)
Query: 83 LNNGLASTPQMGWNSWNFFACNI----------SETIIKETADALVSTGLAELGYDHVNI 132
L+NGL TP MGW +W F CNI SE + E AD + G ++GY ++NI
Sbjct: 1 LDNGLLQTPPMGWLAWERFRCNINCDEDPKNCISEQLFMEMADRMAQDGWRDMGYTYLNI 60
Query: 133 DDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFH 192
DDCW RD G+L+PD FP GI LADYVH GLKLGIY+D G FTC PG+
Sbjct: 61 DDCWIGG-RDASGRLMPDPKRFPHGIPFLADYVHSLGLKLGIYADMGNFTCMGYPGTTLD 119
Query: 193 EK-DDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYSLCEWGVDDPA 251
+ DA FA W VD LK D CF+ E + YP M ALN TG I +S C W +
Sbjct: 120 KVVQDAQTFAEWKVDMLKLDGCFSTPEERAQGYPKMAAALNATGRPIAFS-CSWPAYEGG 178
Query: 252 L-------WAGKVGNSWRTTGDINDTWASMTSI----ADINDKWASYAGPGGWNDPDMLE 300
L + N WR DI D+W S+ SI + D AGPG WNDPDML
Sbjct: 179 LPPRVQYSLLADICNLWRNYDDIQDSWWSVLSILNWFVEHQDILQPVAGPGHWNDPDMLL 238
Query: 301 VGNGGMSYQEYRAHFSIWALMKAPLLIGCDVRNMTAETFEILSNKEVIAVNQDPLGVQGR 360
+GN G+S ++ RA ++W ++ APLL+ D+R ++A+ +IL N +I +NQDPLG+QGR
Sbjct: 239 IGNFGLSLEQSRAQMALWTVLAAPLLMSTDLRTISAQNMDILQNPLMIKINQDPLGIQGR 298
Query: 361 KV 362
++
Sbjct: 299 RI 300
>pdb|3HG3|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 2. Substrate
Bound
pdb|3HG3|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 2. Substrate
Bound
pdb|3TV8|A Chain A, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3TV8|B Chain B, Pharmacological Chaperoning In Human Alpha-Galactosidase
Length = 404
Score = 242 bits (617), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 136/308 (44%), Positives = 180/308 (58%), Gaps = 36/308 (11%)
Query: 83 LNNGLASTPQMGWNSWNFFACN----------ISETIIKETADALVSTGLAELGYDHVNI 132
L+NGLA TP MGW W F CN ISE + E A+ +VS G + GY+++ I
Sbjct: 1 LDNGLARTPTMGWLHWERFMCNLDCQEEPDSCISEKLFMEMAELMVSEGWKDAGYEYLCI 60
Query: 133 DDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFH 192
DDCW +P RD +G+L D FP GI+ LA+YVH KGLKLGIY+D G TC PGS +
Sbjct: 61 DDCWMAPQRDSEGRLQADPQRFPHGIRQLANYVHSKGLKLGIYADVGNKTCAGFPGSFGY 120
Query: 193 EKDDAPLFASWGVDYLKYDNCFNLGIEP-KKRYPPMRDALNETGCSIFYSLCEWGVDDPA 251
DA FA WGVD LK+ C+ +E Y M ALN TG SI YS CEW +
Sbjct: 121 YDIDAQTFADWGVDLLKFAGCYCDSLENLADGYKHMSLALNRTGRSIVYS-CEWPL---Y 176
Query: 252 LWA---------GKVGNSWRTTGDINDTWASMTSIADINDKWASY--------AGPGGWN 294
+W + N WR DI+D+W S+ SI D W S+ AGPGGWN
Sbjct: 177 MWPFQKPNYTEIRQYCNHWRNFADIDDSWKSIKSILD----WTSFNQERIVDVAGPGGWN 232
Query: 295 DPDMLEVGNGGMSYQEYRAHFSIWALMKAPLLIGCDVRNMTAETFEILSNKEVIAVNQDP 354
DPDML +GN G+S+ + ++WA+M APL + D+R+++ + +L +K+VIA+NQDP
Sbjct: 233 DPDMLVIGNFGLSWNQQVTQMALWAIMAAPLFMSNDLRHISPQAKALLQDKDVIAINQDP 292
Query: 355 LGVQGRKV 362
LG QG ++
Sbjct: 293 LGKQGYQL 300
>pdb|1SZN|A Chain A, The Structure Of Alpha-Galactosidase
pdb|1T0O|A Chain A, The Structure Of Alpha-Galactosidase From Trichoderma
Reesei Complexed With Beta-D-Galactose
Length = 417
Score = 224 bits (572), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 124/314 (39%), Positives = 164/314 (52%), Gaps = 39/314 (12%)
Query: 91 PQMGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPD 150
P +GWNSWN + C+I E+ A+ +VS+GL + GY++VNIDDCWS + G + P+
Sbjct: 12 PSLGWNSWNAYHCDIDESKFLSAAELIVSSGLLDAGYNYVNIDDCWSMKDGRVDGHIAPN 71
Query: 151 TITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKY 210
FP GI LA VH GLKLGIYS AG TC P SL +E DA FA WGVDYLKY
Sbjct: 72 ATRFPDGIDGLAKKVHALGLKLGIYSTAGTATCAGYPASLGYEDVDAADFADWGVDYLKY 131
Query: 211 DNC-------------------------FNLGIEPK--------------KRYPPMRDAL 231
DNC ++P +R+ MR+AL
Sbjct: 132 DNCNVPSDWQDEYVACNPDFVKTGPNGTCTTALDPTLAPPGYDWSTSKSAERFGAMRNAL 191
Query: 232 NETGCSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWASMTSIADINDKWASYAGPG 291
+ I S+C WG D W G SWR + DI+ W S+T I ++N +
Sbjct: 192 AKQSHEIVLSMCIWGQADVFSWGNSTGISWRMSDDISPNWGSVTRILNLNSFKLNSVDFW 251
Query: 292 GWNDPDMLEVGNGGMSYQEYRAHFSIWALMKAPLLIGCDVRNMTAETFEILSNKEVIAVN 351
G ND DMLEVGNG ++ E R HF++WA MK+PLLIG D+ ++ +L NK ++A N
Sbjct: 252 GHNDADMLEVGNGNLTAAETRTHFALWAAMKSPLLIGTDLAQLSQNNINLLKNKHLLAFN 311
Query: 352 QDPLGVQGRKVFGW 365
QD + Q + W
Sbjct: 312 QDSVYGQPATPYKW 325
>pdb|3A21|A Chain A, Crystal Structure Of Streptomyces Avermitilis Beta-L-
Arabinopyranosidase
pdb|3A21|B Chain B, Crystal Structure Of Streptomyces Avermitilis Beta-L-
Arabinopyranosidase
pdb|3A22|A Chain A, Crystal Structure Of Beta-L-Arabinopyranosidase Complexed
With L- Arabinose
pdb|3A22|B Chain B, Crystal Structure Of Beta-L-Arabinopyranosidase Complexed
With L- Arabinose
pdb|3A23|A Chain A, Crystal Structure Of Beta-l-arabinopyranosidase Complexed
With D- Galactose
pdb|3A23|B Chain B, Crystal Structure Of Beta-l-arabinopyranosidase Complexed
With D- Galactose
Length = 614
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 118/290 (40%), Positives = 156/290 (53%), Gaps = 20/290 (6%)
Query: 93 MGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTI 152
MGW SWN FA I ++IK+ DA V+ GL GY ++NID+ W RD G + DT
Sbjct: 14 MGWASWNSFAAKIDYSVIKKQVDAFVAAGLPAAGYTYINIDEGWWQGTRDSAGNITVDTA 73
Query: 153 TFPSGIKALADYVHGKGLKLGIYSDAGVFTCQV-----RP-----GSLFHEKDDAPLFAS 202
+P G+ A+ Y+H KGLK GIY+DAG C RP GS H D F++
Sbjct: 74 EWPGGMSAITAYIHSKGLKAGIYTDAGKDGCGYYYPTGRPAAPGSGSEGHYDQDMLQFST 133
Query: 203 WGVDYLKYDNCFN--LGIEPKKRYPPMRDALNE----TGCSIFYSLCEWGVDDPALWAGK 256
WG D++K D C G++ Y + DA+ TG + S+C WG +P WA
Sbjct: 134 WGFDFVKVDWCGGDAEGLDAATTYKSISDAVGRAAATTGRPLTLSICNWGYQNPWNWAAG 193
Query: 257 VGNSWRTTGDI--NDTWASMTSIADINDK--WASYAGPGGWNDPDMLEVGNGGMSYQEYR 312
WRT+ DI SMTS+ D+ + G +NDPDML VG G + + R
Sbjct: 194 QAPLWRTSTDIIYYGNQPSMTSLLSNFDQTLHPTAQHTGYYNDPDMLMVGMDGFTAAQNR 253
Query: 313 AHFSIWALMKAPLLIGCDVRNMTAETFEILSNKEVIAVNQDPLGVQGRKV 362
H ++WA+ APLL G D+ MT+ET IL N EVIAV+QD G+QG KV
Sbjct: 254 THMNLWAISGAPLLAGNDLTTMTSETAGILKNPEVIAVDQDSRGLQGVKV 303
>pdb|3CC1|A Chain A, Crystal Structure Of A Putative
Alpha-N-Acetylgalactosaminidase (Bh1870) From Bacillus
Halodurans C-125 At 2.00 A Resolution
pdb|3CC1|B Chain B, Crystal Structure Of A Putative
Alpha-N-Acetylgalactosaminidase (Bh1870) From Bacillus
Halodurans C-125 At 2.00 A Resolution
Length = 433
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 82/346 (23%), Positives = 139/346 (40%), Gaps = 81/346 (23%)
Query: 82 QLNNGLASTPQMGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPL- 140
++N A TP GWNSW+ + +++E + A+ + L + G++++ +D W P
Sbjct: 3 EVNRLSALTPPXGWNSWDCYGASVTEEEVLGNAE-YXANHLKKYGWEYIVVDIQWYEPTA 61
Query: 141 ------------RDLKGQLVPDTITFPS-----GIKALADYVHGKGLKLGIYSDAGVFTC 183
D G+L+P T FPS G K L+D +H GLK GI+ G+
Sbjct: 62 NSSAYNPFAPLCXDEYGRLLPATNRFPSAKNGAGFKPLSDAIHDLGLKFGIHIXRGIPRQ 121
Query: 184 QVRPGS-----------LFHEKDDAP------------------------LFASWGVDYL 208
V S + H P L+A WGVD++
Sbjct: 122 AVYENSPVLGSTKTAREIAHTNSICPWNTDXYGVDPTKEGAQSYYNSLFELYAQWGVDFV 181
Query: 209 KYDNC-----FNLGIEPKKRYPPMRDALNETGCSIFYSLCEWGVDDPALWAGKV---GNS 260
K D+ ++ +E K ++ A+ G SL P +A N
Sbjct: 182 KVDDIAASRLYDTHLEEIKX---IQRAIQACGRPXVLSLSPGPA--PIKYAHHFKTNANX 236
Query: 261 WRTTGDINDTWASMTSIADINDKWASYAGPGGWNDPDMLEVGNGGM-------------- 306
WR T D D W+ + + + W + G G W D L +G+ G+
Sbjct: 237 WRITDDFWDDWSLLYQXFERCEVWEKHIGTGHWPDCGXLPLGHIGIRSVDGPGGDRWTRF 296
Query: 307 SYQEYRAHFSIWALMKAPLLIGCDVRNMTAETFEILSNKEVIAVNQ 352
+ E ++WA+ +PL G ++R+ T +L+N+ ++++NQ
Sbjct: 297 TKDEQLTXXNLWAICHSPLXFGGELRDNDEWTLSLLTNEGILSINQ 342
>pdb|2XN0|A Chain A, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm, Ptcl4 Derivative
pdb|2XN0|B Chain B, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm, Ptcl4 Derivative
pdb|2XN1|A Chain A, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Tris
pdb|2XN1|B Chain B, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Tris
pdb|2XN1|C Chain C, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Tris
pdb|2XN1|D Chain D, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Tris
Length = 732
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 13/105 (12%)
Query: 96 NSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPD----T 151
N+W + +E +K D +LG + +DD W RD + D
Sbjct: 338 NNWEATYFDFNEDKLKTIVDKA-----KKLGLEMFVLDDGWFGH-RDDDNSSLGDWKVYK 391
Query: 152 ITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDD 196
FP+G+ ADYVH +GLK G++ + + + + +L+ E D
Sbjct: 392 KKFPNGLGHFADYVHEQGLKFGLWFEPEMISYE---SNLYKEHPD 433
>pdb|2XN2|A Chain A, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Galactose
Length = 732
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 11/104 (10%)
Query: 96 NSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTI--- 152
N+W + +E +K D +LG + +DD W D L +
Sbjct: 338 NNWEATYFDFNEDKLKTIVDKA-----KKLGLEMFVLDDGWFGHRDDDNSSLGDWKVYKK 392
Query: 153 TFPSGIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDD 196
FP+G+ ADYVH +GLK G++ + + + + +L+ E D
Sbjct: 393 KFPNGLGHFADYVHEQGLKFGLWFEPEMISYE---SNLYKEHPD 433
>pdb|2AB5|A Chain A, Bi3 Laglidadg Maturase
pdb|2AB5|B Chain B, Bi3 Laglidadg Maturase
Length = 269
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/132 (20%), Positives = 57/132 (43%), Gaps = 6/132 (4%)
Query: 143 LKGQLVPDTITFPSGIKALADYVHGKG--LK-LGIYSDAGVFTCQVRPGSLFHEKDDAPL 199
LK ++P +P DY++ K LK + Y+D + ++P + + +
Sbjct: 93 LKNIIIPIFNKYPXLTNKHYDYLYFKDNLLKDIKYYNDLSYYLRPIKPFNTTEDILNKNY 152
Query: 200 FASWGVDYLKYDNCFNLGIEP--KKRYPPMRDALNETGCSIFYSLCEWGVDDPALWAGKV 257
F+SW + + + +CF++ +P KK + + ++ + + ++ +
Sbjct: 153 FSSWLIGFFEAKSCFSI-YKPXNKKXKTASFEVSXNNNXEVXLAIKSYLKINNNIYXNEF 211
Query: 258 GNSWRTTGDIND 269
NS TT IND
Sbjct: 212 NNSKXTTKSIND 223
>pdb|4FNR|A Chain A, Crystal Structure Of Gh36 Alpha-galactosidase Agaa From
Geobacillus Stearothermophilus
pdb|4FNR|B Chain B, Crystal Structure Of Gh36 Alpha-galactosidase Agaa From
Geobacillus Stearothermophilus
pdb|4FNR|C Chain C, Crystal Structure Of Gh36 Alpha-galactosidase Agaa From
Geobacillus Stearothermophilus
pdb|4FNR|D Chain D, Crystal Structure Of Gh36 Alpha-galactosidase Agaa From
Geobacillus Stearothermophilus
Length = 729
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 118 VSTGLAELGYDHVNIDDCWSSPLRDLKGQL---VPDTITFPSGIKALADYVHGKGLKLGI 174
++ AELG + V +DD W D + L + + P+G+ LA V+ GL+ G+
Sbjct: 351 IARTAAELGIELVVLDDGWFGERDDDRRSLGDWIVNRRKLPNGLDGLAKQVNELGLQFGL 410
Query: 175 YSDAGVFTCQVRPGSLFHEK 194
+ + + V P S + K
Sbjct: 411 WVEPEM----VSPNSELYRK 426
>pdb|4FNT|A Chain A, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D548n From Geobacillus Stearothermophilus In Complex
With Raffinose
pdb|4FNT|B Chain B, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D548n From Geobacillus Stearothermophilus In Complex
With Raffinose
pdb|4FNT|C Chain C, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D548n From Geobacillus Stearothermophilus In Complex
With Raffinose
pdb|4FNT|D Chain D, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D548n From Geobacillus Stearothermophilus In Complex
With Raffinose
Length = 729
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 123 AELGYDHVNIDDCWSSPLRDLKGQL---VPDTITFPSGIKALADYVHGKGLKLGIYSDAG 179
AELG + V +DD W D + L + + P+G+ LA V+ GL+ G++ +
Sbjct: 356 AELGIELVVLDDGWFGERDDDRRSLGDWIVNRRKLPNGLDGLAKQVNELGLQFGLWVEPE 415
Query: 180 VFTCQVRPGSLFHEK 194
+ V P S + K
Sbjct: 416 M----VSPNSELYRK 426
>pdb|4FNU|A Chain A, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D478a From Geobacillus Stearothermophilus In Complex
With Stachyose
pdb|4FNU|B Chain B, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D478a From Geobacillus Stearothermophilus In Complex
With Stachyose
pdb|4FNU|C Chain C, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D478a From Geobacillus Stearothermophilus In Complex
With Stachyose
pdb|4FNU|D Chain D, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
D478a From Geobacillus Stearothermophilus In Complex
With Stachyose
Length = 729
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 123 AELGYDHVNIDDCWSSPLRDLKGQL---VPDTITFPSGIKALADYVHGKGLKLGIYSDAG 179
AELG + V +DD W D + L + + P+G+ LA V+ GL+ G++ +
Sbjct: 356 AELGIELVVLDDGWFGERDDDRRSLGDWIVNRRKLPNGLDGLAKQVNELGLQFGLWVEPE 415
Query: 180 VFTCQVRPGSLFHEK 194
+ V P S + K
Sbjct: 416 M----VSPNSELYRK 426
>pdb|1XNF|A Chain A, Crystal Structure Of E.Coli Tpr-Protein Nlpi
pdb|1XNF|B Chain B, Crystal Structure Of E.Coli Tpr-Protein Nlpi
Length = 275
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 92 QMGWNSWNFFACNISETIIKE--TADALVSTGLAE 124
Q GWN F+ NISE + E ADA +T LAE
Sbjct: 178 QWGWNIVEFYLGNISEQTLXERLKADATDNTSLAE 212
>pdb|4FNP|A Chain A, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus
pdb|4FNP|B Chain B, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus
pdb|4FNP|C Chain C, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus
pdb|4FNP|D Chain D, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus
pdb|4FNS|A Chain A, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus In Complex With 1-
Deoxygalactonojirimycin
pdb|4FNS|B Chain B, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus In Complex With 1-
Deoxygalactonojirimycin
pdb|4FNS|C Chain C, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus In Complex With 1-
Deoxygalactonojirimycin
pdb|4FNS|D Chain D, Crystal Structure Of Gh36 Alpha-galactosidase Agaa A355e
From Geobacillus Stearothermophilus In Complex With 1-
Deoxygalactonojirimycin
Length = 729
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 123 AELGYDHVNIDDCWSSPLRDLKGQL---VPDTITFPSGIKALADYVHGKGLKLGIYSDAG 179
AELG + V +DD W D + L + + P+G+ LA V+ GL+ G++ +
Sbjct: 356 AELGIELVVLDDGWFGERDDDRRSLGDWIVNRRKLPNGLDGLAKQVNELGLQFGLWVEPE 415
Query: 180 VFTCQVRPGSLFHEK 194
+ V P S + K
Sbjct: 416 M----VSPNSELYRK 426
>pdb|1FXW|F Chain F, Crystal Structure Of The Recombinant Alpha1ALPHA2
Catalytic Heterodimer Of Bovine Brain
Platelet-Activating Factor Acetylhydrolase Ib.
pdb|1VYH|A Chain A, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|B Chain B, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|E Chain E, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|F Chain F, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|I Chain I, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|J Chain J, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|M Chain M, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|N Chain N, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|Q Chain Q, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|R Chain R, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 229
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 41 DVGFAGRVVVPLLQSYE--KASYSRGFSRNFGKIFDTSNYGILQLNNG 86
DV F G +V L+Q YE + +S + NFG DT+ + + +L NG
Sbjct: 41 DVLFVGDSMVQLMQQYEIWRELFSPLHALNFGIGGDTTRHVLWRLKNG 88
>pdb|4IHA|A Chain A, Crystal Structure Of Rice Dwarf14 (d14) In Complex With A
Gr24 Hydrolysis Intermediate
pdb|4IHA|B Chain B, Crystal Structure Of Rice Dwarf14 (d14) In Complex With A
Gr24 Hydrolysis Intermediate
pdb|4IH9|A Chain A, Crystal Structure Of Rice Dwarf14 (d14)
pdb|4IH9|B Chain B, Crystal Structure Of Rice Dwarf14 (d14)
Length = 268
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 34/89 (38%), Gaps = 14/89 (15%)
Query: 288 AGPGGWNDPDMLEVGNGGMSYQEYR-------AHFSIWALMKAPLLIGCDVRNMTAETFE 340
A P ND D +GG +E + A++S WA APL +G DV E
Sbjct: 122 ASPRFLNDSDY----HGGFELEEIQQVFDAMGANYSAWATGYAPLAVGADVPAAVQEFSR 177
Query: 341 ILSNKE---VIAVNQDPLGVQGRKVFGWV 366
L N + V Q R V G V
Sbjct: 178 TLFNMRPDISLHVCQTVFKTDLRGVLGMV 206
>pdb|3W04|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W04|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W05|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In Complex
With Pmsf
pdb|3W05|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In Complex
With Pmsf
Length = 266
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 34/89 (38%), Gaps = 14/89 (15%)
Query: 288 AGPGGWNDPDMLEVGNGGMSYQEYR-------AHFSIWALMKAPLLIGCDVRNMTAETFE 340
A P ND D +GG +E + A++S WA APL +G DV E
Sbjct: 120 ASPRFLNDSDY----HGGFELEEIQQVFDAMGANYSAWATGYAPLAVGADVPAAVQEFSR 175
Query: 341 ILSNKE---VIAVNQDPLGVQGRKVFGWV 366
L N + V Q R V G V
Sbjct: 176 TLFNMRPDISLHVCQTVFKTDLRGVLGMV 204
>pdb|3MI6|A Chain A, Crystal Structure Of The Alpha-Galactosidase From
Lactobacil Brevis, Northeast Structural Genomics
Consortium Target Lbr
pdb|3MI6|B Chain B, Crystal Structure Of The Alpha-Galactosidase From
Lactobacil Brevis, Northeast Structural Genomics
Consortium Target Lbr
pdb|3MI6|C Chain C, Crystal Structure Of The Alpha-Galactosidase From
Lactobacil Brevis, Northeast Structural Genomics
Consortium Target Lbr
pdb|3MI6|D Chain D, Crystal Structure Of The Alpha-Galactosidase From
Lactobacil Brevis, Northeast Structural Genomics
Consortium Target Lbr
Length = 745
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 8/82 (9%)
Query: 125 LGYDHVNIDDCWSSPLRDLKGQL---VPDTITFPSGIKALADYVHGKGLKLGIYSDAGVF 181
LG + +DD W D L D FP GI+ + VH +G K G++ +
Sbjct: 359 LGIEXFVLDDGWFGHRDDDTTSLGDWFVDQRKFPDGIEHFSQAVHQQGXKFGLWFEPEXV 418
Query: 182 TC-----QVRPGSLFHEKDDAP 198
+ Q P L H P
Sbjct: 419 SVDSDLYQQHPDWLIHAPKSTP 440
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,189,567
Number of Sequences: 62578
Number of extensions: 596399
Number of successful extensions: 1157
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1102
Number of HSP's gapped (non-prelim): 27
length of query: 393
length of database: 14,973,337
effective HSP length: 101
effective length of query: 292
effective length of database: 8,652,959
effective search space: 2526664028
effective search space used: 2526664028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)