Query 016207
Match_columns 393
No_of_seqs 231 out of 1505
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 04:46:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016207.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016207hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02229 alpha-galactosidase 100.0 2.9E-95 6E-100 734.4 28.5 352 32-391 12-365 (427)
2 PLN02692 alpha-galactosidase 100.0 4.1E-91 8.9E-96 701.6 29.7 310 79-391 44-356 (412)
3 PLN02808 alpha-galactosidase 100.0 5.3E-91 1.1E-95 698.7 29.6 308 81-391 22-332 (386)
4 KOG2366 Alpha-D-galactosidase 100.0 6.5E-80 1.4E-84 602.4 20.0 321 68-391 10-354 (414)
5 PLN03231 putative alpha-galact 100.0 4.4E-77 9.4E-82 592.3 22.0 265 91-357 1-352 (357)
6 PLN02899 alpha-galactosidase 100.0 8.9E-71 1.9E-75 569.7 25.9 278 81-361 21-386 (633)
7 PF02065 Melibiase: Melibiase; 100.0 9.5E-45 2.1E-49 367.3 16.5 317 51-389 1-375 (394)
8 COG3345 GalA Alpha-galactosida 100.0 2E-34 4.4E-39 293.0 13.4 312 14-352 218-614 (687)
9 PLN02219 probable galactinol-- 99.9 2.7E-24 5.9E-29 227.6 23.3 289 88-389 191-573 (775)
10 PLN02355 probable galactinol-- 99.9 3.6E-24 7.8E-29 227.1 23.1 288 88-389 195-581 (758)
11 PLN02684 Probable galactinol-- 99.9 4E-23 8.6E-28 218.7 21.9 283 93-389 204-572 (750)
12 PF05691 Raffinose_syn: Raffin 99.9 3.8E-22 8.3E-27 212.8 20.0 284 93-388 197-583 (747)
13 PLN02711 Probable galactinol-- 99.9 3.2E-22 7E-27 212.1 18.3 283 93-388 215-600 (777)
14 PLN02982 galactinol-raffinose 99.7 3.2E-17 7E-22 174.2 17.7 285 93-389 224-685 (865)
15 cd06592 GH31_glucosidase_KIAA1 99.7 3.2E-16 6.9E-21 154.6 19.0 172 90-279 13-235 (303)
16 cd06593 GH31_xylosidase_YicI Y 99.5 4.6E-12 1E-16 125.0 19.1 167 100-280 16-236 (308)
17 PF10566 Glyco_hydro_97: Glyco 99.4 1.1E-12 2.4E-17 127.2 10.0 215 104-332 28-256 (273)
18 cd06589 GH31 The enzymes of gl 99.3 5.7E-11 1.2E-15 115.0 18.1 168 88-280 3-198 (265)
19 cd06599 GH31_glycosidase_Aec37 99.2 2.8E-10 6.1E-15 113.1 16.2 165 104-280 25-250 (317)
20 cd06598 GH31_transferase_CtsZ 99.2 1.3E-09 2.9E-14 108.3 18.6 164 105-280 21-243 (317)
21 cd06604 GH31_glucosidase_II_Ma 99.2 2E-09 4.3E-14 107.9 18.5 160 105-280 21-249 (339)
22 PRK10658 putative alpha-glucos 99.1 3.1E-09 6.8E-14 115.1 19.2 165 101-279 276-494 (665)
23 cd06595 GH31_xylosidase_XylS-l 99.1 5.5E-09 1.2E-13 102.7 18.4 163 105-279 22-223 (292)
24 cd06600 GH31_MGAM-like This fa 99.1 4.2E-09 9E-14 104.8 17.5 160 105-280 21-227 (317)
25 cd06591 GH31_xylosidase_XylS X 99.1 7.1E-09 1.5E-13 103.1 18.5 162 105-280 21-243 (319)
26 cd06601 GH31_lyase_GLase GLase 99.1 4.1E-09 8.9E-14 105.5 16.5 159 105-279 21-230 (332)
27 PF01055 Glyco_hydro_31: Glyco 99.0 3.2E-09 7E-14 109.5 13.7 160 105-280 40-265 (441)
28 cd06602 GH31_MGAM_SI_GAA This 99.0 4.5E-08 9.8E-13 98.3 18.5 159 105-279 21-230 (339)
29 cd06597 GH31_transferase_CtsY 98.9 2.7E-08 5.9E-13 99.9 16.5 171 97-280 13-263 (340)
30 cd06594 GH31_glucosidase_YihQ 98.9 1.2E-07 2.7E-12 94.3 20.1 161 106-279 21-246 (317)
31 cd06603 GH31_GANC_GANAB_alpha 98.9 7.9E-08 1.7E-12 96.4 18.1 161 104-280 20-249 (339)
32 COG1501 Alpha-glucosidases, fa 98.8 5.6E-08 1.2E-12 106.8 15.2 167 97-279 269-492 (772)
33 PLN02763 hydrolase, hydrolyzin 98.7 1E-06 2.2E-11 98.4 18.4 159 105-279 198-427 (978)
34 PRK10426 alpha-glucosidase; Pr 98.5 1.7E-06 3.7E-11 93.7 16.0 160 106-278 219-442 (635)
35 KOG1065 Maltase glucoamylase a 97.7 0.00017 3.7E-09 78.7 9.4 116 92-215 293-449 (805)
36 cd06596 GH31_CPE1046 CPE1046 i 96.6 0.0089 1.9E-07 58.0 8.8 137 105-280 42-182 (261)
37 TIGR01515 branching_enzym alph 94.3 0.28 6E-06 53.4 10.5 100 105-213 153-297 (613)
38 PF13200 DUF4015: Putative gly 92.4 0.8 1.7E-05 45.9 9.4 101 106-217 11-150 (316)
39 PF01120 Alpha_L_fucos: Alpha- 90.2 4.4 9.5E-05 41.0 12.3 84 158-242 140-243 (346)
40 PF02638 DUF187: Glycosyl hydr 89.8 1.5 3.2E-05 43.8 8.4 103 106-213 17-163 (311)
41 smart00812 Alpha_L_fucos Alpha 89.7 5.7 0.00012 40.9 12.8 80 158-238 130-226 (384)
42 COG0296 GlgB 1,4-alpha-glucan 86.3 2.4 5.3E-05 46.2 7.9 101 106-215 163-307 (628)
43 TIGR02402 trehalose_TreZ malto 84.8 7.7 0.00017 41.7 10.9 123 106-237 109-271 (542)
44 TIGR02104 pulA_typeI pullulana 84.7 4.9 0.00011 43.7 9.4 87 157-246 230-351 (605)
45 PRK14706 glycogen branching en 84.2 5.4 0.00012 43.8 9.5 88 123-214 178-309 (639)
46 PF14488 DUF4434: Domain of un 83.9 3.3 7.3E-05 37.5 6.6 74 102-182 14-93 (166)
47 PRK14705 glycogen branching en 82.1 6.3 0.00014 46.3 9.3 99 106-213 763-906 (1224)
48 PLN02960 alpha-amylase 81.2 10 0.00022 43.1 10.2 100 106-214 414-559 (897)
49 TIGR02456 treS_nterm trehalose 80.4 13 0.00029 39.8 10.6 63 105-174 25-94 (539)
50 PRK05402 glycogen branching en 79.2 12 0.00026 41.7 10.1 102 106-213 263-406 (726)
51 PRK10785 maltodextrin glucosid 77.8 19 0.00041 39.2 10.9 130 104-241 175-370 (598)
52 cd03465 URO-D_like The URO-D _ 76.4 9.4 0.0002 37.6 7.6 87 123-241 178-269 (330)
53 PRK12568 glycogen branching en 76.1 22 0.00048 39.7 10.9 99 106-213 267-410 (730)
54 PRK12313 glycogen branching en 76.0 17 0.00036 39.8 9.9 102 106-213 168-311 (633)
55 PF01791 DeoC: DeoC/LacD famil 74.6 8.8 0.00019 36.3 6.5 83 158-242 114-200 (236)
56 PF14871 GHL6: Hypothetical gl 71.6 34 0.00074 29.8 9.0 61 112-179 4-67 (132)
57 cd02875 GH18_chitobiase Chitob 71.3 13 0.00029 37.6 7.3 83 159-243 67-157 (358)
58 TIGR02403 trehalose_treC alpha 70.6 42 0.0009 36.1 11.2 63 106-174 25-93 (543)
59 COG1649 Uncharacterized protei 70.1 25 0.00055 36.7 9.0 137 104-244 60-272 (418)
60 PF05913 DUF871: Bacterial pro 69.5 5.4 0.00012 40.7 4.0 87 106-216 12-101 (357)
61 PRK06233 hypothetical protein; 68.6 25 0.00054 36.0 8.6 108 100-214 157-279 (372)
62 COG1830 FbaB DhnA-type fructos 68.2 30 0.00064 34.0 8.5 77 158-242 132-209 (265)
63 PRK13398 3-deoxy-7-phosphohept 67.8 35 0.00077 33.3 9.1 105 105-243 38-142 (266)
64 cd02931 ER_like_FMN Enoate red 66.7 22 0.00047 36.5 7.8 107 103-212 138-273 (382)
65 PRK06852 aldolase; Validated 64.7 34 0.00074 34.2 8.4 80 158-241 156-236 (304)
66 PRK12595 bifunctional 3-deoxy- 64.4 54 0.0012 33.5 10.0 103 106-242 130-232 (360)
67 PLN00196 alpha-amylase; Provis 63.7 23 0.00049 37.1 7.3 70 94-172 32-108 (428)
68 PF07302 AroM: AroM protein; 61.9 1.1E+02 0.0023 29.3 10.9 121 105-242 67-209 (221)
69 PRK14510 putative bifunctional 60.6 61 0.0013 38.5 10.8 84 157-240 248-371 (1221)
70 cd08607 GDPD_GDE5 Glycerophosp 60.2 16 0.00034 35.6 5.2 43 159-213 248-290 (290)
71 TIGR02102 pullulan_Gpos pullul 59.3 1.1E+02 0.0025 35.9 12.5 86 157-245 556-673 (1111)
72 KOG3340 Alpha-L-fucosidase [Ca 59.3 17 0.00037 36.8 5.1 54 158-212 152-218 (454)
73 PF07555 NAGidase: beta-N-acet 58.9 32 0.00069 34.4 7.1 101 103-216 10-116 (306)
74 cd02803 OYE_like_FMN_family Ol 58.5 96 0.0021 30.5 10.5 105 103-214 129-251 (327)
75 TIGR01361 DAHP_synth_Bsub phos 56.8 46 0.001 32.3 7.7 102 106-242 37-139 (260)
76 PLN02361 alpha-amylase 56.1 77 0.0017 32.9 9.6 101 108-216 29-184 (401)
77 COG2200 Rtn c-di-GMP phosphodi 55.5 31 0.00068 33.1 6.3 73 158-243 138-214 (256)
78 cd08555 PI-PLCc_GDPD_SF Cataly 55.5 25 0.00054 31.7 5.3 42 158-212 138-179 (179)
79 PRK13397 3-deoxy-7-phosphohept 55.3 1.1E+02 0.0024 29.8 9.9 102 106-242 27-129 (250)
80 cd00465 URO-D_CIMS_like The UR 54.1 23 0.0005 34.4 5.2 73 123-214 154-231 (306)
81 cd08577 PI-PLCc_GDPD_SF_unchar 54.0 28 0.0006 33.2 5.6 41 158-211 187-227 (228)
82 smart00642 Aamy Alpha-amylase 53.3 49 0.0011 29.8 6.8 65 106-176 17-90 (166)
83 cd04747 OYE_like_5_FMN Old yel 53.1 63 0.0014 33.0 8.3 105 103-211 132-255 (361)
84 cd08580 GDPD_Rv2277c_like Glyc 52.8 29 0.00062 33.8 5.6 41 159-213 219-260 (263)
85 cd00598 GH18_chitinase-like Th 52.6 60 0.0013 29.3 7.5 87 157-243 50-147 (210)
86 PRK05301 pyrroloquinoline quin 52.4 85 0.0018 31.7 9.2 80 103-214 44-124 (378)
87 TIGR02109 PQQ_syn_pqqE coenzym 52.4 98 0.0021 30.9 9.5 81 103-214 35-115 (358)
88 cd08575 GDPD_GDE4_like Glycero 52.2 28 0.0006 33.6 5.4 41 159-213 221-261 (264)
89 cd02932 OYE_YqiM_FMN Old yello 52.0 64 0.0014 32.2 8.1 102 103-211 142-261 (336)
90 PRK08195 4-hyroxy-2-oxovalerat 52.0 2.1E+02 0.0046 28.8 11.8 121 102-251 19-144 (337)
91 cd01948 EAL EAL domain. This d 51.5 32 0.0007 31.4 5.5 74 157-243 133-210 (240)
92 PF00128 Alpha-amylase: Alpha 51.3 19 0.00041 34.1 4.1 123 107-239 3-193 (316)
93 smart00052 EAL Putative diguan 51.2 38 0.00083 30.9 6.0 72 158-242 135-210 (241)
94 PRK03705 glycogen debranching 51.1 70 0.0015 35.4 8.8 60 157-216 243-341 (658)
95 cd08605 GDPD_GDE5_like_1_plant 50.5 24 0.00053 34.2 4.7 42 159-212 240-281 (282)
96 PRK08227 autoinducer 2 aldolas 50.4 62 0.0013 31.7 7.4 71 158-242 129-199 (264)
97 COG1856 Uncharacterized homolo 50.4 91 0.002 30.2 8.2 107 104-239 38-153 (275)
98 cd02871 GH18_chitinase_D-like 50.2 50 0.0011 32.7 7.0 87 157-243 61-154 (312)
99 cd06545 GH18_3CO4_chitinase Th 50.0 23 0.0005 33.8 4.4 85 143-231 35-124 (253)
100 TIGR03217 4OH_2_O_val_ald 4-hy 49.4 2.9E+02 0.0063 27.8 12.6 87 102-211 18-107 (333)
101 PF03102 NeuB: NeuB family; I 48.6 56 0.0012 31.5 6.7 42 158-214 58-99 (241)
102 TIGR02401 trehalose_TreY malto 48.4 62 0.0013 36.8 7.9 70 103-177 11-86 (825)
103 PRK09441 cytoplasmic alpha-amy 47.4 55 0.0012 34.5 7.1 46 187-235 208-254 (479)
104 cd08583 PI-PLCc_GDPD_SF_unchar 47.3 42 0.00092 31.6 5.7 42 159-214 195-236 (237)
105 COG1523 PulA Type II secretory 47.2 95 0.0021 34.7 9.0 60 158-217 267-365 (697)
106 TIGR01463 mtaA_cmuA methyltran 46.8 50 0.0011 32.8 6.4 87 123-241 190-281 (340)
107 PRK14511 maltooligosyl trehalo 46.2 71 0.0015 36.6 7.9 71 102-178 14-91 (879)
108 COG0407 HemE Uroporphyrinogen- 46.2 59 0.0013 33.2 6.7 86 123-237 199-285 (352)
109 PRK13523 NADPH dehydrogenase N 46.0 80 0.0017 31.9 7.7 103 103-212 130-248 (337)
110 COG3669 Alpha-L-fucosidase [Ca 45.8 33 0.00071 35.6 4.8 20 158-177 103-122 (430)
111 PRK09454 ugpQ cytoplasmic glyc 45.3 44 0.00094 31.9 5.5 42 159-214 199-240 (249)
112 KOG3111 D-ribulose-5-phosphate 44.8 25 0.00054 33.1 3.5 23 158-180 101-123 (224)
113 cd08564 GDPD_GsGDE_like Glycer 44.5 38 0.00083 32.5 5.0 45 159-213 213-257 (265)
114 cd08581 GDPD_like_1 Glyceropho 43.8 38 0.00082 32.0 4.7 38 161-212 191-228 (229)
115 PRK13396 3-deoxy-7-phosphohept 43.8 1.4E+02 0.0029 30.7 8.9 103 105-242 112-215 (352)
116 cd08563 GDPD_TtGDE_like Glycer 43.7 44 0.00095 31.2 5.1 40 159-212 190-229 (230)
117 PRK08508 biotin synthase; Prov 43.7 77 0.0017 30.9 7.0 81 105-213 40-121 (279)
118 cd08582 GDPD_like_2 Glyceropho 43.4 46 0.001 31.1 5.3 41 159-213 191-231 (233)
119 cd02930 DCR_FMN 2,4-dienoyl-Co 43.2 95 0.0021 31.3 7.8 102 103-211 125-244 (353)
120 cd08612 GDPD_GDE4 Glycerophosp 43.1 46 0.00099 32.8 5.4 41 159-213 251-291 (300)
121 cd08601 GDPD_SaGlpQ_like Glyce 42.5 50 0.0011 31.4 5.4 41 159-213 208-248 (256)
122 cd08579 GDPD_memb_like Glycero 42.1 46 0.001 30.8 5.0 40 159-212 180-219 (220)
123 PRK08673 3-deoxy-7-phosphohept 42.0 1.4E+02 0.0031 30.2 8.8 106 103-242 101-207 (335)
124 cd06542 GH18_EndoS-like Endo-b 41.9 37 0.00081 32.2 4.4 87 157-243 52-151 (255)
125 PRK10605 N-ethylmaleimide redu 41.6 1.3E+02 0.0027 30.8 8.4 106 103-212 147-270 (362)
126 cd04735 OYE_like_4_FMN Old yel 41.4 1E+02 0.0022 31.2 7.7 103 103-213 132-257 (353)
127 cd08562 GDPD_EcUgpQ_like Glyce 41.0 54 0.0012 30.3 5.3 40 159-212 189-228 (229)
128 cd08572 GDPD_GDE5_like Glycero 40.3 45 0.00098 32.8 4.8 42 159-212 251-292 (293)
129 TIGR03569 NeuB_NnaB N-acetylne 40.0 91 0.002 31.5 7.0 44 156-214 76-119 (329)
130 PRK13361 molybdenum cofactor b 39.9 1.8E+02 0.004 28.9 9.2 54 104-177 44-99 (329)
131 PF00563 EAL: EAL domain; Int 39.9 41 0.00088 30.7 4.2 70 159-242 137-210 (236)
132 PLN02801 beta-amylase 39.7 47 0.001 35.5 5.0 58 105-173 34-91 (517)
133 PRK09250 fructose-bisphosphate 39.5 1.3E+02 0.0028 30.8 7.9 57 158-215 181-241 (348)
134 cd08561 GDPD_cytoplasmic_ScUgp 39.2 58 0.0013 30.8 5.3 41 159-213 202-242 (249)
135 PF00834 Ribul_P_3_epim: Ribul 39.0 75 0.0016 29.7 5.9 23 158-180 94-116 (201)
136 cd06522 GH25_AtlA-like AtlA is 39.0 1.3E+02 0.0028 27.5 7.4 103 123-241 22-130 (192)
137 PLN02803 beta-amylase 39.0 47 0.001 35.7 4.9 59 105-174 104-162 (548)
138 cd02933 OYE_like_FMN Old yello 39.0 1.7E+02 0.0037 29.4 8.9 106 103-212 140-262 (338)
139 PRK12858 tagatose 1,6-diphosph 38.9 1.6E+02 0.0034 30.0 8.5 83 158-241 145-247 (340)
140 cd08574 GDPD_GDE_2_3_6 Glycero 38.7 53 0.0011 31.4 4.9 39 159-211 213-251 (252)
141 TIGR02103 pullul_strch alpha-1 38.5 1.1E+02 0.0023 35.3 8.0 86 158-246 406-528 (898)
142 cd08567 GDPD_SpGDE_like Glycer 38.2 57 0.0012 30.8 5.1 41 159-213 221-261 (263)
143 TIGR03128 RuMP_HxlA 3-hexulose 37.2 2.3E+02 0.0051 25.7 8.9 61 123-212 73-134 (206)
144 cd04734 OYE_like_3_FMN Old yel 36.8 1.3E+02 0.0027 30.4 7.5 102 103-211 129-249 (343)
145 cd06543 GH18_PF-ChiA-like PF-C 36.8 2.7E+02 0.0058 27.6 9.7 87 157-243 55-145 (294)
146 PRK10933 trehalose-6-phosphate 36.5 1.1E+02 0.0024 33.0 7.5 62 106-174 31-99 (551)
147 PRK08091 ribulose-phosphate 3- 36.4 1.8E+02 0.0039 27.9 8.0 76 158-242 105-207 (228)
148 cd08606 GDPD_YPL110cp_fungi Gl 36.3 65 0.0014 31.2 5.2 43 159-213 235-277 (286)
149 cd08610 GDPD_GDE6 Glycerophosp 36.2 63 0.0014 32.4 5.2 42 159-214 235-276 (316)
150 PLN00197 beta-amylase; Provisi 36.1 57 0.0012 35.2 5.0 59 105-174 124-182 (573)
151 PLN02161 beta-amylase 35.9 57 0.0012 34.9 4.9 59 105-174 114-172 (531)
152 PRK12677 xylose isomerase; Pro 35.7 29 0.00063 35.7 2.7 62 108-174 114-177 (384)
153 PRK09722 allulose-6-phosphate 35.6 68 0.0015 30.7 5.0 76 158-242 97-197 (229)
154 cd08556 GDPD Glycerophosphodie 35.4 73 0.0016 28.1 5.0 40 159-212 150-189 (189)
155 PF02449 Glyco_hydro_42: Beta- 35.3 26 0.00055 35.6 2.3 60 105-177 7-68 (374)
156 KOG1066 Glucosidase II catalyt 35.3 58 0.0013 36.3 4.9 82 86-179 349-435 (915)
157 cd07944 DRE_TIM_HOA_like 4-hyd 35.3 4.2E+02 0.0092 25.6 12.1 66 103-180 15-82 (266)
158 TIGR02668 moaA_archaeal probab 35.1 2.4E+02 0.0053 27.3 9.1 77 104-212 39-116 (302)
159 cd08609 GDPD_GDE3 Glycerophosp 34.3 67 0.0015 32.2 5.0 41 159-213 235-275 (315)
160 PRK12330 oxaloacetate decarbox 34.2 3.8E+02 0.0081 28.8 10.8 55 104-177 151-208 (499)
161 PRK14042 pyruvate carboxylase 34.0 3.3E+02 0.0072 29.9 10.5 55 104-177 150-205 (596)
162 PLN02705 beta-amylase 33.8 61 0.0013 35.5 4.8 59 105-174 265-323 (681)
163 COG3867 Arabinogalactan endo-1 33.4 1.2E+02 0.0025 30.7 6.3 116 123-243 73-221 (403)
164 cd02801 DUS_like_FMN Dihydrour 33.0 3.9E+02 0.0085 24.5 9.8 93 105-212 64-159 (231)
165 cd06547 GH85_ENGase Endo-beta- 32.8 78 0.0017 32.1 5.2 75 159-233 49-133 (339)
166 PRK08745 ribulose-phosphate 3- 32.8 2.2E+02 0.0048 27.1 8.0 76 158-242 99-199 (223)
167 COG0036 Rpe Pentose-5-phosphat 32.8 81 0.0018 30.1 5.0 83 151-243 92-198 (220)
168 PLN02877 alpha-amylase/limit d 32.6 1.5E+02 0.0032 34.5 7.8 86 158-246 468-599 (970)
169 cd08573 GDPD_GDE1 Glycerophosp 32.6 78 0.0017 30.4 5.0 39 159-212 218-257 (258)
170 PRK13491 chemoreceptor glutami 32.4 48 0.001 31.2 3.3 56 336-391 118-188 (199)
171 cd06416 GH25_Lys1-like Lys-1 i 32.3 1.7E+02 0.0036 26.7 7.0 103 123-241 19-129 (196)
172 PRK09936 hypothetical protein; 32.2 93 0.002 31.0 5.4 62 103-181 33-99 (296)
173 cd03310 CIMS_like CIMS - Cobal 32.0 1.7E+02 0.0037 28.6 7.4 74 121-216 159-233 (321)
174 PLN03244 alpha-amylase; Provis 31.9 53 0.0012 37.2 4.1 59 155-213 440-533 (872)
175 cd00019 AP2Ec AP endonuclease 31.9 3.6E+02 0.0078 25.6 9.6 126 108-246 10-147 (279)
176 cd08604 GDPD_SHV3_repeat_2 Gly 31.8 1.2E+02 0.0027 29.8 6.4 54 159-214 240-295 (300)
177 cd08570 GDPD_YPL206cp_fungi Gl 31.8 96 0.0021 29.0 5.4 40 159-212 194-233 (234)
178 PRK15108 biotin synthase; Prov 31.4 1.9E+02 0.0042 29.2 7.8 81 105-214 76-156 (345)
179 PLN02447 1,4-alpha-glucan-bran 30.8 1.1E+02 0.0023 34.6 6.3 98 111-214 254-393 (758)
180 PRK14041 oxaloacetate decarbox 30.5 4.8E+02 0.01 27.7 10.8 55 104-177 149-204 (467)
181 TIGR01668 YqeG_hyp_ppase HAD s 30.4 93 0.002 27.8 4.8 44 124-177 22-67 (170)
182 PLN02905 beta-amylase 30.3 76 0.0017 34.9 4.8 59 105-174 283-341 (702)
183 PRK14507 putative bifunctional 30.1 1.6E+02 0.0034 36.4 7.8 71 103-178 753-829 (1693)
184 PLN02389 biotin synthase 29.9 2.5E+02 0.0054 28.9 8.4 81 105-213 116-197 (379)
185 PRK06252 methylcobalamin:coenz 29.3 1.1E+02 0.0023 30.4 5.5 85 123-241 190-279 (339)
186 cd02874 GH18_CFLE_spore_hydrol 28.9 1.3E+02 0.0029 29.4 6.1 73 158-231 47-129 (313)
187 PRK06256 biotin synthase; Vali 28.7 1.5E+02 0.0032 29.5 6.4 79 105-211 91-169 (336)
188 COG0854 PdxJ Pyridoxal phospha 28.6 1.2E+02 0.0026 29.2 5.3 42 157-212 112-153 (243)
189 PRK06769 hypothetical protein; 28.6 1E+02 0.0022 27.6 4.8 24 153-177 29-52 (173)
190 cd08559 GDPD_periplasmic_GlpQ_ 28.5 91 0.002 30.6 4.8 49 159-212 246-295 (296)
191 TIGR01108 oadA oxaloacetate de 28.3 4.5E+02 0.0097 28.8 10.4 54 105-177 146-200 (582)
192 PF08924 DUF1906: Domain of un 28.2 88 0.0019 27.3 4.1 54 113-175 82-135 (136)
193 cd08608 GDPD_GDE2 Glycerophosp 28.0 1.1E+02 0.0025 31.1 5.5 42 159-214 213-254 (351)
194 cd08560 GDPD_EcGlpQ_like_1 Gly 28.0 1.6E+02 0.0034 30.1 6.5 58 158-215 280-349 (356)
195 TIGR02100 glgX_debranch glycog 27.5 1.1E+02 0.0024 34.0 5.7 77 157-233 246-365 (688)
196 PF13204 DUF4038: Protein of u 27.1 40 0.00086 33.2 2.0 144 92-246 15-188 (289)
197 PRK11059 regulatory protein Cs 26.8 89 0.0019 34.0 4.8 72 157-241 534-609 (640)
198 TIGR00542 hxl6Piso_put hexulos 26.8 4E+02 0.0087 25.4 8.9 104 89-208 1-111 (279)
199 KOG2672 Lipoate synthase [Coen 26.7 78 0.0017 31.6 3.8 58 185-243 134-195 (360)
200 TIGR00433 bioB biotin syntheta 26.7 2E+02 0.0043 27.7 6.8 81 105-213 62-142 (296)
201 PRK13561 putative diguanylate 26.7 76 0.0016 34.4 4.2 49 158-216 536-584 (651)
202 TIGR03586 PseI pseudaminic aci 26.2 2.4E+02 0.0052 28.5 7.4 42 158-214 79-120 (327)
203 PRK09282 pyruvate carboxylase 26.1 5.8E+02 0.012 28.0 10.7 54 105-177 151-205 (592)
204 PRK09121 5-methyltetrahydropte 25.9 1E+02 0.0022 31.1 4.7 105 97-214 139-254 (339)
205 PF04476 DUF556: Protein of un 25.5 1.2E+02 0.0025 29.4 4.7 92 91-212 118-209 (235)
206 PRK12331 oxaloacetate decarbox 25.3 6.7E+02 0.014 26.5 10.8 54 104-176 150-204 (448)
207 COG3589 Uncharacterized conser 25.0 87 0.0019 31.9 3.9 53 158-216 51-103 (360)
208 COG3280 TreY Maltooligosyl tre 24.7 2.3E+02 0.0049 32.1 7.2 71 103-178 14-90 (889)
209 PF03740 PdxJ: Pyridoxal phosp 24.4 1.7E+02 0.0036 28.4 5.5 43 156-212 111-153 (239)
210 TIGR01748 rhaA L-rhamnose isom 24.4 1.8E+02 0.0039 30.3 6.1 65 104-179 65-130 (414)
211 cd04733 OYE_like_2_FMN Old yel 24.3 2.4E+02 0.0052 28.2 7.0 97 105-208 139-253 (338)
212 PLN02455 fructose-bisphosphate 24.3 1.3E+02 0.0028 30.8 4.9 56 159-214 87-147 (358)
213 cd02879 GH18_plant_chitinase_c 24.2 75 0.0016 31.3 3.3 86 158-243 53-156 (299)
214 COG2894 MinD Septum formation 24.1 78 0.0017 30.7 3.2 27 103-134 95-121 (272)
215 cd03311 CIMS_C_terminal_like C 23.7 2.7E+02 0.006 27.5 7.3 101 107-215 147-252 (332)
216 PRK01060 endonuclease IV; Prov 23.7 5.4E+02 0.012 24.4 9.2 121 110-243 14-147 (281)
217 TIGR03315 Se_ygfK putative sel 23.6 73 0.0016 37.1 3.5 46 124-177 258-303 (1012)
218 cd03174 DRE_TIM_metallolyase D 23.5 3.6E+02 0.0078 25.3 7.8 49 158-210 117-165 (265)
219 cd00958 DhnA Class I fructose- 23.3 5.1E+02 0.011 24.1 8.7 75 158-241 111-185 (235)
220 PRK08255 salicylyl-CoA 5-hydro 23.1 3E+02 0.0065 30.9 8.2 102 103-211 539-658 (765)
221 PF01208 URO-D: Uroporphyrinog 22.9 1.5E+02 0.0033 29.3 5.3 85 123-241 192-282 (343)
222 PRK12581 oxaloacetate decarbox 22.9 8.3E+02 0.018 26.0 10.9 53 105-176 160-213 (468)
223 cd02930 DCR_FMN 2,4-dienoyl-Co 22.9 2.1E+02 0.0047 28.7 6.4 67 104-176 30-97 (353)
224 PF01373 Glyco_hydro_14: Glyco 22.7 61 0.0013 33.7 2.4 55 109-174 17-71 (402)
225 cd07945 DRE_TIM_CMS Leptospira 22.7 4.2E+02 0.009 25.9 8.2 49 158-209 117-165 (280)
226 cd07943 DRE_TIM_HOA 4-hydroxy- 22.6 6.8E+02 0.015 23.9 10.8 100 105-237 138-243 (263)
227 PRK07226 fructose-bisphosphate 22.4 5.2E+02 0.011 24.9 8.8 72 158-241 128-202 (267)
228 smart00518 AP2Ec AP endonuclea 22.4 5.6E+02 0.012 24.1 9.0 119 110-243 12-141 (273)
229 PRK09856 fructoselysine 3-epim 21.9 79 0.0017 30.1 2.9 59 108-175 90-148 (275)
230 PLN02425 probable fructose-bis 21.9 1.5E+02 0.0033 30.5 5.0 57 159-215 122-183 (390)
231 PRK09505 malS alpha-amylase; R 21.9 2.9E+02 0.0063 30.9 7.6 65 105-174 227-310 (683)
232 PF13344 Hydrolase_6: Haloacid 21.8 2.1E+02 0.0047 23.3 5.1 53 143-206 5-57 (101)
233 cd06416 GH25_Lys1-like Lys-1 i 21.8 1.3E+02 0.0027 27.5 4.1 24 157-180 111-134 (196)
234 cd08576 GDPD_like_SMaseD_PLD G 21.7 3.8E+02 0.0082 26.4 7.6 45 155-213 190-239 (265)
235 PF01261 AP_endonuc_2: Xylose 21.5 1.1E+02 0.0024 27.0 3.7 67 107-180 70-136 (213)
236 cd03174 DRE_TIM_metallolyase D 21.5 6.6E+02 0.014 23.4 9.2 112 103-244 14-137 (265)
237 PRK09853 putative selenate red 21.4 83 0.0018 36.7 3.3 46 124-177 260-305 (1019)
238 TIGR03551 F420_cofH 7,8-dideme 21.2 1.4E+02 0.003 30.0 4.6 85 105-209 70-156 (343)
239 TIGR02666 moaA molybdenum cofa 21.2 7.1E+02 0.015 24.5 9.7 75 104-210 42-118 (334)
240 PRK14040 oxaloacetate decarbox 21.1 7.7E+02 0.017 27.1 10.5 54 105-177 152-206 (593)
241 cd08602 GDPD_ScGlpQ1_like Glyc 20.9 2.4E+02 0.0051 28.0 6.1 51 158-212 255-308 (309)
242 PRK09997 hydroxypyruvate isome 20.9 4.8E+02 0.01 24.5 8.1 78 110-210 17-104 (258)
243 PF13199 Glyco_hydro_66: Glyco 20.8 8E+02 0.017 26.8 10.4 224 86-330 98-392 (559)
244 cd00945 Aldolase_Class_I Class 20.8 3.3E+02 0.0072 23.9 6.6 85 107-213 64-151 (201)
245 cd08571 GDPD_SHV3_plant Glycer 20.8 2.4E+02 0.0052 27.9 6.1 54 159-214 241-297 (302)
246 cd06570 GH20_chitobiase-like_1 20.6 1.9E+02 0.0041 28.9 5.3 58 105-174 15-86 (311)
247 PF07745 Glyco_hydro_53: Glyco 20.5 2.2E+02 0.0047 28.9 5.8 79 111-206 27-125 (332)
248 PLN02227 fructose-bisphosphate 20.5 1.6E+02 0.0036 30.4 4.9 57 159-215 131-192 (399)
249 PLN02784 alpha-amylase 20.3 2.3E+02 0.0049 32.6 6.3 60 107-174 520-586 (894)
250 COG0502 BioB Biotin synthase a 20.2 1.5E+02 0.0032 30.2 4.5 91 90-210 62-160 (335)
251 cd02810 DHOD_DHPD_FMN Dihydroo 20.1 5.8E+02 0.013 24.5 8.6 90 106-214 109-199 (289)
252 PF02879 PGM_PMM_II: Phosphogl 20.0 2.6E+02 0.0056 22.5 5.3 50 124-179 43-93 (104)
No 1
>PLN02229 alpha-galactosidase
Probab=100.00 E-value=2.9e-95 Score=734.45 Aligned_cols=352 Identities=78% Similarity=1.285 Sum_probs=323.9
Q ss_pred eeeeeeeeccccccccccccccCceecccccchhHHhhhHhhhhcccchhcccCCCCCCCceEEechhhhCCCCCHHHHH
Q 016207 32 FALVLSLIIDVGFAGRVVVPLLQSYEKASYSRGFSRNFGKIFDTSNYGILQLNNGLASTPQMGWNSWNFFACNISETIIK 111 (393)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pp~GwnSW~~~~~~i~e~~i~ 111 (393)
+.|+++++.|...+.+.......+. .++.+-.++....+....++++++++||||||||+.|+|+|||+.|+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ngla~tPpmGWnSWn~~~~~i~E~~i~ 83 (427)
T PLN02229 12 LLLSLSVLVSQSIAGRVKAPLLQSV--------FSKSFNSIYDTSMYGRLQLNNGLARTPQMGWNSWNFFACNINETVIK 83 (427)
T ss_pred HHHHHHhhcchhhhhhhcccccccc--------chhhhhhhhhhhhhhhhhccCCccCCCCceEEchhhhCcccCHHHHH
Confidence 3344444566666666665555554 33555566666666667778999999999999999999999999999
Q ss_pred HHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccccCCCCcccc
Q 016207 112 ETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLF 191 (393)
Q Consensus 112 ~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~ 191 (393)
++||+|+++||+++||+||+|||||+...||++|+|++|++|||+|||+|+||||++|||||||.++|..+|..+||+++
T Consensus 84 ~~ad~~v~~Gl~~~Gy~yv~iDDgW~~~~rd~~G~l~~d~~rFP~G~k~ladyiH~~GlKfGIy~d~G~~TC~~~pGS~g 163 (427)
T PLN02229 84 ETADALVSTGLADLGYIHVNIDDCWSNLKRDSKGQLVPDPKTFPSGIKLLADYVHSKGLKLGIYSDAGVFTCQVRPGSLF 163 (427)
T ss_pred HHHHHHHHhHHHhCCCEEEEEcCCcCCCCcCCCCCEEEChhhcCCcHHHHHHHHHHCCCceEEeccCCCcccCCCCCCcc
Confidence 99999999999999999999999999878999999999999999999999999999999999999999999999999999
Q ss_pred cHHhHHHHHHHcCCcEEEeecCCCCCCCccccchHHHHHHHhcCCCceeeccCCCCCChhhhhhhccceeeecCCCCCCh
Q 016207 192 HEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTW 271 (393)
Q Consensus 192 ~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~AL~~agr~i~~slc~~g~~~P~~w~~~~~n~~Ris~Di~~~W 271 (393)
|++.++++|++|||||||+|+|+.....+.++|..|++||+++||||+||+|+||...|+.|..+++|+||+++||.+.|
T Consensus 164 ~e~~DA~~fA~WGVDylK~D~C~~~~~~~~~~y~~m~~AL~~tGRpI~~SlC~WG~~~p~~w~~~~~n~WR~s~DI~d~W 243 (427)
T PLN02229 164 HEVDDADIFASWGVDYLKYDNCYNLGIKPIERYPPMRDALNATGRSIFYSLCEWGVDDPALWAGKVGNSWRTTDDINDTW 243 (427)
T ss_pred HHHHHHHHHHHcCCCEEEecCCCCCCcchhHHHHHHHHHHHhhCCCcEEEecCCCCCCHHHHHHhhcCeeeccCCccccc
Confidence 99999999999999999999998877777889999999999999999999999999889999999999999999999999
Q ss_pred hHHHHHHHhhcccccccCCCCccCCCcccccCCCcChhhhhhHHHHHHHhcCceeecCCCCCCCHHHHHhcCChhhHhhc
Q 016207 272 ASMTSIADINDKWASYAGPGGWNDPDMLEVGNGGMSYQEYRAHFSIWALMKAPLLIGCDVRNMTAETFEILSNKEVIAVN 351 (393)
Q Consensus 272 ~~~~~~~~~~~~~~~~~gpg~wnDpDmL~vg~~~lT~~E~rt~~slwa~~gsPLlig~Dl~~l~~~~~~lL~N~eviain 351 (393)
+++..+++.+..|+.+++||+|||||||+||+.++|.+|+||||+||||++|||++|+|+++++++.++||+|+||||||
T Consensus 244 ~sv~~i~~~~~~~~~~agPG~wnDpDML~vGn~glT~~E~rthfsLWai~~SPLiiG~DL~~m~~~tl~ILtNkEVIAIN 323 (427)
T PLN02229 244 ASMTTIADLNNKWAAYAGPGGWNDPDMLEVGNGGMTYEEYRGHFSIWALMKAPLLIGCDVRNMTAETMEILSNKEVIAVN 323 (427)
T ss_pred ccHHHHHHHHHHHHhhcCCCCCCCCCeeeeCCCCCCHHHHHHHHHHHHHHhCceeecCCcccCCHHHHHHhcCHHHHhhc
Confidence 99999999888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceEeeeeccCCceEEEE--ccCCCeEEEEeccCCC
Q 016207 352 QDPLGVQGRKVFGWVLCLDIAWWL--LSGIDVQKLKLSQHNG 391 (393)
Q Consensus 352 QD~lg~~~~~v~~~~~~~d~~~w~--~~~~~~~~~~~~~~~~ 391 (393)
||++|++|++|.....+.+.|+|. |++++++|++|||.++
T Consensus 324 QD~lG~qg~~v~~~~~~~~~~vW~~~L~~g~~aValfN~~~~ 365 (427)
T PLN02229 324 QDPLGVQGRKIQANGKNGCQQVWAGPLSGDRLVVALWNRCSE 365 (427)
T ss_pred ccccccCcEEEEecCCCCceEEEEEECCCCCEEEEEEeCCCC
Confidence 999999999998866556799997 9999999999999875
No 2
>PLN02692 alpha-galactosidase
Probab=100.00 E-value=4.1e-91 Score=701.56 Aligned_cols=310 Identities=67% Similarity=1.109 Sum_probs=297.0
Q ss_pred chhcccCCCCCCCceEEechhhhCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCH
Q 016207 79 GILQLNNGLASTPQMGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGI 158 (393)
Q Consensus 79 ~~~~~~~~~~~~pp~GwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl 158 (393)
....+.|+++++||||||||+.|+|+|||+.|+++||++++.||+++||+||+|||||+...||++|+|++|++|||+||
T Consensus 44 ~~~~~~ngla~tPpmGWnSW~~~~~~i~E~~i~~~ad~~~~~gl~~~Gy~yv~iDDgW~~~~rd~~G~~~~d~~kFP~G~ 123 (412)
T PLN02692 44 RRNLLANGLGITPPMGWNSWNHFSCKIDEKMIKETADALVSTGLSKLGYTYVNIDDCWAEIARDEKGNLVPKKSTFPSGI 123 (412)
T ss_pred hhhcccCcCcCCCcceEEchhhhCcccCHHHHHHHHHHHHhccchhcCcEEEEEcCCcCCCCCCCCCCeeeChhhcCCcH
Confidence 33455799999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccC-CCCcccccHHhHHHHHHHcCCcEEEeecCCCCCCCccccchHHHHHHHhcCCC
Q 016207 159 KALADYVHGKGLKLGIYSDAGVFTCQ-VRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCS 237 (393)
Q Consensus 159 ~~l~d~vh~~Gmk~Glw~~pg~~~c~-~~pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~AL~~agr~ 237 (393)
|+|+||||++|||||||.++|..+|. ++||+++|++.++++|++|||||||+|+|+.....+.++|+.|++||+++|||
T Consensus 124 k~ladyiH~~GLKfGIy~d~G~~tC~~~~pGS~g~e~~DA~~fA~WGvDylK~D~C~~~~~~~~~~y~~m~~AL~~tGRp 203 (412)
T PLN02692 124 KALADYVHSKGLKLGIYSDAGYFTCSKTMPGSLGHEEQDAKTFASWGIDYLKYDNCNNDGSKPTVRYPVMTRALMKAGRP 203 (412)
T ss_pred HHHHHHHHHCCCceEEEecCCccccCCCCCCchHHHHHHHHHHHhcCCCEEeccccCCCCcchhHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999995 58999999999999999999999999999887666778999999999999999
Q ss_pred ceeeccCCCCCChhhhhhhccceeeecCCCCCChhHHHHHHHhhcccccccCCCCccCCCcccccCCCcChhhhhhHHHH
Q 016207 238 IFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWASMTSIADINDKWASYAGPGGWNDPDMLEVGNGGMSYQEYRAHFSI 317 (393)
Q Consensus 238 i~~slc~~g~~~P~~w~~~~~n~~Ris~Di~~~W~~~~~~~~~~~~~~~~~gpg~wnDpDmL~vg~~~lT~~E~rt~~sl 317 (393)
|+||+|+||...|+.|..+++|+||++.||.+.|+++..+++.+..++.+++||+|||||||+||++++|.+|+||||++
T Consensus 204 I~~SlC~wg~~~p~~w~~~~~n~WR~s~DI~d~W~sv~~~~~~~~~~~~~agPG~wnDpDML~VGn~glT~~E~rThfsL 283 (412)
T PLN02692 204 IFFSLCEWGDMHPALWGSKVGNSWRTTNDISDTWDSMISRADMNEVYAELARPGGWNDPDMLEVGNGGMTKDEYIVHFSI 283 (412)
T ss_pred eEEEecCCCcCChhhhhhhcCCccccccccccchHhHHHHHHHHHHHhhccCCCCCCCCCeEeECCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred HHHhcCceeecCCCCCCCHHHHHhcCChhhHhhcCCCCCCcceEeeeeccCCceEEEE--ccCCCeEEEEeccCCC
Q 016207 318 WALMKAPLLIGCDVRNMTAETFEILSNKEVIAVNQDPLGVQGRKVFGWVLCLDIAWWL--LSGIDVQKLKLSQHNG 391 (393)
Q Consensus 318 wa~~gsPLlig~Dl~~l~~~~~~lL~N~eviainQD~lg~~~~~v~~~~~~~d~~~w~--~~~~~~~~~~~~~~~~ 391 (393)
|||++|||++|+|+++++++.++||+|+||||||||+||+|+++|.+ +.+.|+|. |++++++|++|||.+.
T Consensus 284 Wai~~SPLiiG~DL~~~~~~~l~iLtN~evIAiNQD~lG~q~~~v~~---~~~~~vW~k~l~~g~~aVal~N~~~~ 356 (412)
T PLN02692 284 WAISKAPLLLGCDVRNMTKETMDIVANKEVIAVNQDPLGVQAKKVRM---EGDLEIWAGPLSGYRVALLLLNRGPW 356 (412)
T ss_pred HHHHhCcceecCCcccCCHHHHHHhcCHHHhhhccCccccCcEEEEe---cCCeEEEEEECCCCCEEEEEEECCCC
Confidence 99999999999999999999999999999999999999999999976 46799997 9999999999999864
No 3
>PLN02808 alpha-galactosidase
Probab=100.00 E-value=5.3e-91 Score=698.72 Aligned_cols=308 Identities=68% Similarity=1.178 Sum_probs=296.4
Q ss_pred hcccCCCCCCCceEEechhhhCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHH
Q 016207 81 LQLNNGLASTPQMGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKA 160 (393)
Q Consensus 81 ~~~~~~~~~~pp~GwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~ 160 (393)
....++++++||||||||+.|+|+|||+.|+++||+|++.||+++||+||+|||||+...||++|+|++|++|||+||++
T Consensus 22 ~~~~ngla~tPpmGWnsW~~~~~~i~e~~i~~~a~~mv~~Gl~~~Gy~yv~iDd~W~~~~rd~~G~~~~d~~rFP~G~~~ 101 (386)
T PLN02808 22 NLLDNGLGLTPQMGWNSWNHFQCNINETLIKQTADAMVSSGLAALGYKYINLDDCWAELKRDSQGNLVPKASTFPSGIKA 101 (386)
T ss_pred hcccCcccCCCcceEEchHHHCCCCCHHHHHHHHHHHHHcchHHhCCEEEEEcCCcCCCCcCCCCCEeeChhhcCccHHH
Confidence 44568999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred HHHHHHHcCCeEEEEeeCCccccC-CCCcccccHHhHHHHHHHcCCcEEEeecCCCCCCCccccchHHHHHHHhcCCCce
Q 016207 161 LADYVHGKGLKLGIYSDAGVFTCQ-VRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIF 239 (393)
Q Consensus 161 l~d~vh~~Gmk~Glw~~pg~~~c~-~~pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~AL~~agr~i~ 239 (393)
|+||||++|||||||.++|..+|. .+||+++|++.++++|++|||||||+|+|+.....+.++|..|++||+++||||+
T Consensus 102 lad~iH~~GlkfGiy~~~G~~tC~~~~pGs~~~e~~DA~~fA~WGvDylK~D~C~~~~~~~~~~y~~m~~AL~~tGRpi~ 181 (386)
T PLN02808 102 LADYVHSKGLKLGIYSDAGTLTCSKTMPGSLGHEEQDAKTFASWGIDYLKYDNCENTGTSPQERYPKMSKALLNSGRPIF 181 (386)
T ss_pred HHHHHHHCCCceEEEecCCccccCCCCCcchHHHHHHHHHHHHhCCCEEeecCcCCCCccHHHHHHHHHHHHHHhCCCeE
Confidence 999999999999999999999995 4899999999999999999999999999998776778899999999999999999
Q ss_pred eeccCCCCCChhhhhhhccceeeecCCCCCChhHHHHHHHhhcccccccCCCCccCCCcccccCCCcChhhhhhHHHHHH
Q 016207 240 YSLCEWGVDDPALWAGKVGNSWRTTGDINDTWASMTSIADINDKWASYAGPGGWNDPDMLEVGNGGMSYQEYRAHFSIWA 319 (393)
Q Consensus 240 ~slc~~g~~~P~~w~~~~~n~~Ris~Di~~~W~~~~~~~~~~~~~~~~~gpg~wnDpDmL~vg~~~lT~~E~rt~~slwa 319 (393)
||+|+||...|..|..+++|+||++.||.+.|+++..+++.+..++.+++||+|||||||+||++++|.+|+||||+|||
T Consensus 182 ~slc~wg~~~p~~w~~~~~n~WR~s~Di~d~W~~v~~~~~~~~~~~~~agPG~wnDpDML~vGn~glt~~E~rthfsLWa 261 (386)
T PLN02808 182 FSLCEWGQEDPATWAGDIGNSWRTTGDIQDNWDSMTSRADQNDRWASYARPGGWNDPDMLEVGNGGMTTEEYRSHFSIWA 261 (386)
T ss_pred EEecCCCCCCHHHHHHhhcCcccccCCcccchhhHHHHHHhhhhhHhhcCCCCCCCCCeeeECCCCCCHHHHHHHHHHHH
Confidence 99999998889999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred HhcCceeecCCCCCCCHHHHHhcCChhhHhhcCCCCCCcceEeeeeccCCceEEEE--ccCCCeEEEEeccCCC
Q 016207 320 LMKAPLLIGCDVRNMTAETFEILSNKEVIAVNQDPLGVQGRKVFGWVLCLDIAWWL--LSGIDVQKLKLSQHNG 391 (393)
Q Consensus 320 ~~gsPLlig~Dl~~l~~~~~~lL~N~eviainQD~lg~~~~~v~~~~~~~d~~~w~--~~~~~~~~~~~~~~~~ 391 (393)
|++|||++|+|+++++++.++||+|+||||||||+||++|++|.+ +.++|+|. |++++++|++|||.++
T Consensus 262 m~~SPLiiG~DL~~~~~~~l~iLtNkevIAINQD~lG~~~~~v~~---~~~~~vW~k~L~~g~~aVal~N~~~~ 332 (386)
T PLN02808 262 LAKAPLLIGCDIRSMDNETFELLSNKEVIAVNQDKLGVQGKKVKK---DGDLEVWAGPLSKKRVAVVLWNRGSS 332 (386)
T ss_pred HHhCcceecCCcCcCCHHHHHHhcCHHHHhhcCCccccCcEEEEe---cCCeEEEEEECCCCCEEEEEEECCCC
Confidence 999999999999999999999999999999999999999999987 46899997 9999999999999875
No 4
>KOG2366 consensus Alpha-D-galactosidase (melibiase) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.5e-80 Score=602.37 Aligned_cols=321 Identities=59% Similarity=0.999 Sum_probs=303.8
Q ss_pred hhhHhhhhcccchhcccCCCCCCCceEEechhhhCCCCC----------HHHHHHHHHHHHHcCCcccCceEEEeCCCcC
Q 016207 68 NFGKIFDTSNYGILQLNNGLASTPQMGWNSWNFFACNIS----------ETIIKETADALVSTGLAELGYDHVNIDDCWS 137 (393)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~pp~GwnSW~~~~~~i~----------e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~ 137 (393)
.|-+++-......+.++||++++|||||+||+.|.|+++ |..++++||+|++.|++++||+||+|||||.
T Consensus 10 ~~~~~v~~~~~~~~~l~NGLg~tP~MGw~sW~~f~cniDCv~~pd~cIsE~l~~~~ad~mvseG~~~vGY~yi~iDDCW~ 89 (414)
T KOG2366|consen 10 NLLSLVMDSVKGRMSLNNGLGRTPQMGWNSWERFRCNIDCVFGPDFCISEQLFKEMADAMVSEGLADVGYEYINIDDCWS 89 (414)
T ss_pred HHHHHHHHhhhhheeeccccccCCCcccccccceeeecccccCCccchhHHHHHHHHHHHHHhHHHhcCcEEEechhhhh
Confidence 344555555666789999999999999999999999887 9999999999999999999999999999999
Q ss_pred CCCCCCCCCccccCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCcEEEeecCCCCC
Q 016207 138 SPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLG 217 (393)
Q Consensus 138 ~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~ 217 (393)
...||.+|++.+|+++||+|+++|++|+|++|+|||||.+.|..||.++||++.|++.++++|++|||||+|+|.|+...
T Consensus 90 e~~Rd~~grLva~~~rFP~Gi~~ladyvHs~GLKlGiYsD~G~~TC~g~PGS~~~e~~DA~tFA~WgvDylKlD~C~~~~ 169 (414)
T KOG2366|consen 90 EVTRDSDGRLVADPSRFPSGIKALADYVHSKGLKLGIYSDAGNFTCAGYPGSLGHEESDAKTFADWGVDYLKLDGCFNNL 169 (414)
T ss_pred hhccCCccccccChhhcccchhhhhhchhhcCCceeeeeccCchhhccCCcccchhhhhhhhhHhhCCcEEecccccccc
Confidence 98899999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCccccchHHHHHHHhcCCCceeeccCCCCCChhhh-------hhhccceeeecCCCCCChhHHHHHHH----hhccccc
Q 016207 218 IEPKKRYPPMRDALNETGCSIFYSLCEWGVDDPALW-------AGKVGNSWRTTGDINDTWASMTSIAD----INDKWAS 286 (393)
Q Consensus 218 ~~~~~~y~~m~~AL~~agr~i~~slc~~g~~~P~~w-------~~~~~n~~Ris~Di~~~W~~~~~~~~----~~~~~~~ 286 (393)
....++|..|++||+++||||++|+|+||.+.|..| ...++|+||+.+||.++|.++..+++ .+..++.
T Consensus 170 ~~~~~~Yp~ms~aLN~tGrpi~ySlC~W~~~~~~~~~~pny~~i~~~~N~WR~~dDI~dtW~Sv~~I~d~~~~nqd~~~~ 249 (414)
T KOG2366|consen 170 ITMPEGYPIMSRALNNTGRPIFYSLCSWPAYHPGLPHHPNYKNISTICNSWRTTDDIQDTWKSVDSIIDYICWNQDRIAP 249 (414)
T ss_pred ccccccchhHHHHHhccCCceEEEeccCcccccCccCCCcchhhhhhhccccchhhhhhHHHHHHHHHHHHhhhhhhhcc
Confidence 889999999999999999999999999999988888 56899999999999999999999988 5778889
Q ss_pred ccCCCCccCCCcccccCCCcChhhhhhHHHHHHHhcCceeecCCCCCCCHHHHHhcCChhhHhhcCCCCCCcceEeeeec
Q 016207 287 YAGPGGWNDPDMLEVGNGGMSYQEYRAHFSIWALMKAPLLIGCDVRNMTAETFEILSNKEVIAVNQDPLGVQGRKVFGWV 366 (393)
Q Consensus 287 ~~gpg~wnDpDmL~vg~~~lT~~E~rt~~slwa~~gsPLlig~Dl~~l~~~~~~lL~N~eviainQD~lg~~~~~v~~~~ 366 (393)
+++||+|||||||++||.++|.+|+++||++||++++||++|+|++.++++.+++|+|+|+|||||||+|.||+++..
T Consensus 250 ~agPg~WNDpDmL~iGN~G~s~e~y~~qf~lWai~kAPLlms~Dlr~is~~~~~il~nk~~IaiNQDplgiqGr~i~~-- 327 (414)
T KOG2366|consen 250 LAGPGGWNDPDMLEIGNGGMSYEEYKGQFALWAILKAPLLMSNDLRLISKQTKEILQNKEVIAINQDPLGIQGRKIVL-- 327 (414)
T ss_pred ccCCCCCCChhHhhcCCCCccHHHHHHHHHHHHHhhchhhhccchhhcCHHHHHHhcChhheeccCCccchhheeeee--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred cCC-ceEEEE--ccCCCeEEEEeccCCC
Q 016207 367 LCL-DIAWWL--LSGIDVQKLKLSQHNG 391 (393)
Q Consensus 367 ~~~-d~~~w~--~~~~~~~~~~~~~~~~ 391 (393)
++ ++++|. +++.+|+|.++||..+
T Consensus 328 -e~~~ievw~~pls~~~~Ava~lNr~~~ 354 (414)
T KOG2366|consen 328 -EGDSIEVWSGPLSGKSVAVAFLNRRKT 354 (414)
T ss_pred -cCCceEEEeeccCCceEEEEEecccCC
Confidence 23 399997 9999999999999843
No 5
>PLN03231 putative alpha-galactosidase; Provisional
Probab=100.00 E-value=4.4e-77 Score=592.29 Aligned_cols=265 Identities=34% Similarity=0.547 Sum_probs=235.8
Q ss_pred CceEEechhhhCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCC----------------CCCCCCCccccCCCC
Q 016207 91 PQMGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSP----------------LRDLKGQLVPDTITF 154 (393)
Q Consensus 91 pp~GwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~----------------~rd~~G~~~~d~~kF 154 (393)
||||||||+.|.|+|||+.|+++|| ++++||+++||+||+|||||+.. .||.+|+++||++||
T Consensus 1 PpMGWNSWn~f~~~i~E~~i~~~Ad-~v~~gL~~~GY~Yv~iDd~W~~~~~~g~~~~~~~~~~~~~~d~~G~l~pd~~rF 79 (357)
T PLN03231 1 PPRGWNSYDSFSFTISEEQFLENAK-IVSETLKPHGYEYVVIDYLWYRKLKHGWFKTSAKSPGYDLIDKWGRPLPDPKRW 79 (357)
T ss_pred CCCCccchhccCcCcCHHHHHHHHH-HHHcchHHhCCEEEEECCcccccccccccccccccccccccCCCCCcccCcccC
Confidence 8999999999999999999999999 77899999999999999999863 268899999999999
Q ss_pred CC-----CHHHHHHHHHHcCCeEEEEeeCCccccC--------CCCc---------------------------------
Q 016207 155 PS-----GIKALADYVHGKGLKLGIYSDAGVFTCQ--------VRPG--------------------------------- 188 (393)
Q Consensus 155 P~-----Gl~~l~d~vh~~Gmk~Glw~~pg~~~c~--------~~pg--------------------------------- 188 (393)
|+ |||+|+||||+||||||||+.+|..+|. +.||
T Consensus 80 Ps~~~~~G~k~lADyvHs~GLKfGIY~~~G~~tca~~~~~pi~G~~Gs~g~~~~a~Dia~~~~~c~~~~~~~~~v~~~~~ 159 (357)
T PLN03231 80 PSTTGGKGFAPIAAKVHALGLKLGIHVMRGISTTAVKKKTPILGAFKSNGHAWNAKDIALMDQACPWMQQCFVGVNTSSE 159 (357)
T ss_pred CCCccccCcHHHHHHHHhCCcceEEEecCCccchhcccCCccCCCCcccccccchhhhccccccccccccccccccccch
Confidence 99 9999999999999999999999988874 3344
Q ss_pred -ccccHHhHHHHHHHcCCcEEEeecCCCCCCCccccchHHHHHHHhcCCCceeeccCCCCCChhhhh---hhccceeeec
Q 016207 189 -SLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYSLCEWGVDDPALWA---GKVGNSWRTT 264 (393)
Q Consensus 189 -s~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~AL~~agr~i~~slc~~g~~~P~~w~---~~~~n~~Ris 264 (393)
+++|++.++++|++|||||||+|+|+.......++|..|++||+++||||+||+|.+. ..|..|. .+++|+||++
T Consensus 160 gaq~y~~~~a~~fA~WGVDylK~D~c~~~~~~~~~~y~~m~~AL~~tGRpIv~Slc~g~-~~~~~~~~~i~~~an~WR~s 238 (357)
T PLN03231 160 GGKLFIQSLYDQYASWGIDFIKHDCVFGAENPQLDEILTVSKAIRNSGRPMIYSLSPGD-GATPGLAARVAQLVNMYRVT 238 (357)
T ss_pred hHHHHHHHHHHHHHHhCCCEEeecccCCCCcccHHHHHHHHHHHHHhCCCeEEEecCCC-CCCchhhhhhhhhcCccccc
Confidence 4456788899999999999999999766555668899999999999999999999743 3333443 4679999999
Q ss_pred CCCCCChhHHHHHHHhhcccc--------cccCCCCccCCCccccc-------------CCCcChhhhhhHHHHHHHhcC
Q 016207 265 GDINDTWASMTSIADINDKWA--------SYAGPGGWNDPDMLEVG-------------NGGMSYQEYRAHFSIWALMKA 323 (393)
Q Consensus 265 ~Di~~~W~~~~~~~~~~~~~~--------~~~gpg~wnDpDmL~vg-------------~~~lT~~E~rt~~slwa~~gs 323 (393)
+||.+.|+++..+++.+..++ .+++||+|||||||+|| +.+||.+|+||||+||||++|
T Consensus 239 ~DI~d~W~~v~~~~~~~~~~~~~~~~~~~~~agpG~WnD~DML~vG~~g~~~~~~g~~~~~glT~~E~rthfslWam~~S 318 (357)
T PLN03231 239 GDDWDDWKYLVKHFDVARDFAAAGLIAIPSVVGGKSWVDLDMLPFGRLTDPAAAYGPYRNSRLSLEEKKTQMTLWAVAKS 318 (357)
T ss_pred CCcccchhhHHHHHHHHHHHhhhcccccccCCCCCCCCCccchhcCCCCCCcccccccccCCCCHHHHHHHHHHHHHHhC
Confidence 999999999988887643332 36789999999999999 357999999999999999999
Q ss_pred ceeecCCCCCCCHHHHHhcCChhhHhhcCCCCCC
Q 016207 324 PLLIGCDVRNMTAETFEILSNKEVIAVNQDPLGV 357 (393)
Q Consensus 324 PLlig~Dl~~l~~~~~~lL~N~eviainQD~lg~ 357 (393)
||++|+||+++++++++||+|+||||||||++|.
T Consensus 319 PLiiG~DL~~~~~~tl~iLtN~evIAINQD~lG~ 352 (357)
T PLN03231 319 PLMFGGDLRRLDNETLSLLTNPTVLEVNSHSTGN 352 (357)
T ss_pred chhhcCCcccCCHHHHHHhcChHHheecCCcccc
Confidence 9999999999999999999999999999999986
No 6
>PLN02899 alpha-galactosidase
Probab=100.00 E-value=8.9e-71 Score=569.75 Aligned_cols=278 Identities=29% Similarity=0.473 Sum_probs=238.5
Q ss_pred hcccCCCCCCCceEEechhhhCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCC-------------CCCCCCc
Q 016207 81 LQLNNGLASTPQMGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPL-------------RDLKGQL 147 (393)
Q Consensus 81 ~~~~~~~~~~pp~GwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~-------------rd~~G~~ 147 (393)
....++++++||||||||+.|.+.|||+.|+++||. .+.||+++||+||+|||||+... +|.+|++
T Consensus 21 ~~~~~glA~TPPMGWNSWn~f~~~I~E~~i~~~Ad~-vs~GLk~~GY~YVnIDDcW~~~~~~g~~~~s~g~~~~D~~GrL 99 (633)
T PLN02899 21 ASSQQQLASFPPRGWNSYDSFSWIVSEEEFLQNAEI-VSQRLLPFGYEYVVVDYLWYRKKVEGAYVDSLGFDVIDEWGRP 99 (633)
T ss_pred ccccCcccCCCCCCCcchhhhccCCCHHHHHHHHHH-HHcchHhhCCeEEEEccccccccccccccccccccccCCCCCC
Confidence 445678999999999999999999999999999995 57899999999999999998642 5788999
Q ss_pred cccCCCCCC-----CHHHHHHHHHHcCCeEEEEeeCCccccC--------------------------------------
Q 016207 148 VPDTITFPS-----GIKALADYVHGKGLKLGIYSDAGVFTCQ-------------------------------------- 184 (393)
Q Consensus 148 ~~d~~kFP~-----Gl~~l~d~vh~~Gmk~Glw~~pg~~~c~-------------------------------------- 184 (393)
+||++|||+ |||+|+||||++|||||||+.+|..+|.
T Consensus 100 vPDp~RFPSs~~g~GmK~LADYVHskGLKFGIY~~~Gi~tcA~~~~~PI~gs~~g~~y~~s~~~~~a~DIa~~~~tC~w~ 179 (633)
T PLN02899 100 IPDPGRWPSSRGGKGFTEVAEKVHAMGLKFGIHVMRGISTQAVNANTPILDAVKGGAYEESGRQWRAKDIALKERACAWM 179 (633)
T ss_pred ccCcccCCCCccCCCcHHHHHHHHhCCcceEEEecCCCcccccccCCccccccccccccccccccchhhccccccccccC
Confidence 999999998 9999999999999999999999865541
Q ss_pred ---------CCCcccccHHhHHHHHHHcCCcEEEeecCCCCCCCccccchHHHHHHHhcCCCceeeccCCCCCChhhhh-
Q 016207 185 ---------VRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYSLCEWGVDDPALWA- 254 (393)
Q Consensus 185 ---------~~pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~AL~~agr~i~~slc~~g~~~P~~w~- 254 (393)
+.||.++|++.++++|++|||||||+|.|+.... ..+.|+.|++||+++||||+||+|.+ ...|..|.
T Consensus 180 ~~g~~~vDa~~~~g~a~~~Sla~tfAsWGVDyLKyD~c~~~~~-~~~ey~~ms~AL~aTGRPIvySLspG-~~~~p~wa~ 257 (633)
T PLN02899 180 SHGFMSVNTKLGAGKAFLRSLYDQYAEWGVDFVKHDCVFGDDF-DLEEITYVSEVLKELDRPIVYSLSPG-TSATPTMAK 257 (633)
T ss_pred CCCcccccccccchhhhhHHHHHHHHHhCCCEEEEcCCCCCCC-ChHHHHHHHHHHHHhCCCeEEEecCC-cccchhhhh
Confidence 1234467788889999999999999999876433 34679999999999999999999974 33333454
Q ss_pred --hhccceeeecCCCCCChhHHHHHHHhhccccccc-------CCCCccCCCcccccC-------------CCcChhhhh
Q 016207 255 --GKVGNSWRTTGDINDTWASMTSIADINDKWASYA-------GPGGWNDPDMLEVGN-------------GGMSYQEYR 312 (393)
Q Consensus 255 --~~~~n~~Ris~Di~~~W~~~~~~~~~~~~~~~~~-------gpg~wnDpDmL~vg~-------------~~lT~~E~r 312 (393)
.+++|+|||++|+.+.|.++..+++.+..|+.++ +|++|||||||+||. .+||.+|+|
T Consensus 258 ~v~~~aNmWRitgDI~D~W~sV~~~~d~~~~~~~~~~~g~~G~~gg~WNDpDML~VG~lg~~~~n~G~~r~~~LT~dE~r 337 (633)
T PLN02899 258 EVSGLVNMYRITGDDWDTWGDVAAHFDVSRDFAAAGLIGAKGLRGRSWPDLDMLPLGWLTDPGSNVGPHRACNLTLDEQK 337 (633)
T ss_pred hhhccCccceecCCcccchHHHHHHHHHHHHHhhccccccCCCCCCCCCCcceecccCCCccccccCccccCCCCHHHHH
Confidence 4678999999999999999998887655443321 345899999999992 259999999
Q ss_pred hHHHHHHHhcCceeecCCCCCCCHHHHHhcCChhhHhhcCCCCCCcceE
Q 016207 313 AHFSIWALMKAPLLIGCDVRNMTAETFEILSNKEVIAVNQDPLGVQGRK 361 (393)
Q Consensus 313 t~~slwa~~gsPLlig~Dl~~l~~~~~~lL~N~eviainQD~lg~~~~~ 361 (393)
|||+||||++|||++|+||++|+++.++||+|+||||||||+++.+.-+
T Consensus 338 ThfSLWAm~aSPLiiG~DLr~md~~tl~ILTNkeVIAINQds~~n~~~~ 386 (633)
T PLN02899 338 TQMTLWAMAKSPLMYGGDLRKLDQATYSLITNPTLLEINSHSSNNMEFP 386 (633)
T ss_pred HHHHHHHHHhCchhhcCCcccCCHHHHHHhcCHHHeEEccCccCCeeee
Confidence 9999999999999999999999999999999999999999988764443
No 7
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=100.00 E-value=9.5e-45 Score=367.29 Aligned_cols=317 Identities=25% Similarity=0.347 Sum_probs=206.1
Q ss_pred cccCceecccccc----hhHHhhhHhhhhcccchhcccCCCCCCCceEEechhhhCCCCCHHHHHHHHHHHHHcCCcccC
Q 016207 51 PLLQSYEKASYSR----GFSRNFGKIFDTSNYGILQLNNGLASTPQMGWNSWNFFACNISETIIKETADALVSTGLAELG 126 (393)
Q Consensus 51 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~pp~GwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G 126 (393)
++++|.++++||. |||++||+|+|+++.+... ..++|||+||||+++++++||++++++|+.+ +++|
T Consensus 1 sf~tP~~~~~~s~~gl~~~s~~~h~~~r~~~~~~~~----~~~~~pv~~nsW~~~~~d~~e~~i~~~a~~~-----~~~G 71 (394)
T PF02065_consen 1 SFQTPEAVASYSDQGLNGMSQRFHRFVRRHLLRPPW----RDKPPPVGWNSWEAYYFDITEEKILELADAA-----AELG 71 (394)
T ss_dssp EEE---EEEEEESBHHHHHHHHHHHHHHHHTSTTTT----TTSS--EEEESHHHHTTG--HHHHHHHHHHH-----HHHT
T ss_pred CccCCeEEEEEecCCHHHHHHHHHHHHHHhcCCCcc----CCCCCceEEEcccccCcCCCHHHHHHHHHHH-----HHhC
Confidence 5789999999996 8889999999999887542 4688999999999999999999999999999 7889
Q ss_pred ceEEEeCCCcCCCCCCCC----CCccccCCCCCCCHHHHHHHHHHcCCeEEEEeeCCcc---------------------
Q 016207 127 YDHVNIDDCWSSPLRDLK----GQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVF--------------------- 181 (393)
Q Consensus 127 ~~~~~IDDGW~~~~rd~~----G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Glw~~pg~~--------------------- 181 (393)
|++|+||||||.. |+.+ |+|.+|++|||+||++|+++||++|||||||++|++.
T Consensus 72 ~e~fviDDGW~~~-r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~~S~l~~~hPdw~l~~~~~~ 150 (394)
T PF02065_consen 72 YEYFVIDDGWFGG-RDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMVSPDSDLYREHPDWVLRDPGRP 150 (394)
T ss_dssp -SEEEE-SSSBCT-ESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEEESSSCHCCSSBGGBTCCTTSE
T ss_pred CEEEEEcCccccc-cCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEeccccccchhHHHHhCccceeecCCCC
Confidence 9999999999984 4444 9999999999999999999999999999999999741
Q ss_pred ---------ccCCCCcccccHHhH-HHHHHHcCCcEEEeecCCCCCC--C-----ccccch----HHHHHHHhcCCCcee
Q 016207 182 ---------TCQVRPGSLFHEKDD-APLFASWGVDYLKYDNCFNLGI--E-----PKKRYP----PMRDALNETGCSIFY 240 (393)
Q Consensus 182 ---------~c~~~pgs~~~~~~~-~~~~~~wGvdylK~D~~~~~~~--~-----~~~~y~----~m~~AL~~agr~i~~ 240 (393)
-|.++|++++|+... .+.+++|||||||+|||..... . ...+|. .+.++|++..+++++
T Consensus 151 ~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~~~~~~~~~~~~~~~~~~~~~y~l~~~L~~~~P~v~i 230 (394)
T PF02065_consen 151 PTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRDITEAGSPSLPEGYHRYVLGLYRLLDRLRARFPDVLI 230 (394)
T ss_dssp -ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-TTS-SSTTS-GHHHHHHHHHHHHHHHHHHHTTTSEE
T ss_pred CcCcccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEeccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCcEE
Confidence 124678899999554 5678999999999999975421 1 123333 588889999999999
Q ss_pred eccCCCCC--ChhhhhhhccceeeecCCCCCChhHHHHHHHhhcccccccCCCCc-cCCCcccccCCCcChhhhhhHHHH
Q 016207 241 SLCEWGVD--DPALWAGKVGNSWRTTGDINDTWASMTSIADINDKWASYAGPGGW-NDPDMLEVGNGGMSYQEYRAHFSI 317 (393)
Q Consensus 241 slc~~g~~--~P~~w~~~~~n~~Ris~Di~~~W~~~~~~~~~~~~~~~~~gpg~w-nDpDmL~vg~~~lT~~E~rt~~sl 317 (393)
+.|++|.. ++.. ..+.+..-+| |..+.++++..+......+.. .--+.| .+.....+ +..++-+.|.+++
T Consensus 231 E~CssGG~R~D~g~--l~~~~~~w~S-D~tda~~R~~iq~g~s~~~p~-~~~~~hv~~~p~~~~--~r~~~l~~r~~~a- 303 (394)
T PF02065_consen 231 ENCSSGGGRFDPGM--LYYTPQSWTS-DNTDALERLRIQYGTSLFYPP-EYMGAHVSASPNHQT--GRTTPLEFRAHVA- 303 (394)
T ss_dssp EE-BTTBTTTSHHH--HCCSSEEESB-ST-SHHHHHHHHHHHCTTSSG-GGEEEEEEHSS-TTT--HHHGGHHHHHHHH-
T ss_pred EeccCCCCccccch--heeccccccC-CccchHHHhhhhcccccccCH-HHhCCeEEecccccc--CCcccceechhhh-
Confidence 99998853 2321 1344443334 555665666655543221111 111111 11111111 1123334444433
Q ss_pred HHHhcCceeecCCCCCCCHHHHHhcCChhhHhhcCCC--CCCcceEeee-eccCCceEEEE--ccCCCeEEEEeccC
Q 016207 318 WALMKAPLLIGCDVRNMTAETFEILSNKEVIAVNQDP--LGVQGRKVFG-WVLCLDIAWWL--LSGIDVQKLKLSQH 389 (393)
Q Consensus 318 wa~~gsPLlig~Dl~~l~~~~~~lL~N~eviainQD~--lg~~~~~v~~-~~~~~d~~~w~--~~~~~~~~~~~~~~ 389 (393)
++ +.+.++.|++++++++++.++ +.||+.+.. +.+.|+...- .+...+...|. .++++-+|+++-|.
T Consensus 304 --~~-g~~g~e~dl~~ls~~e~~~~~--~~ia~YK~~r~li~~G~~yrL~~p~~~~~~~~~~v~~d~~~av~~~~~~ 375 (394)
T PF02065_consen 304 --MF-GRLGLELDLTKLSEEELAAVK--EQIAFYKSIRPLIQSGDFYRLDSPDDSNWDAWQVVSPDKSEAVVFVFRL 375 (394)
T ss_dssp --TC-SEEEEESTGCGS-HHHHHHHH--HHHHHHHHCHHHHHHSEEEECCTTCCHCEEEEEEE-TTSSEEEEEEEET
T ss_pred --hc-CCceeccCcccCCHHHHHHHH--HHHHHHHhHHHHhcCCcEEEecCCCccceEEEEEEcCCCCEEEEEEEEc
Confidence 33 788899999999999888776 445554321 1233443332 12233566774 67888888766554
No 8
>COG3345 GalA Alpha-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2e-34 Score=293.05 Aligned_cols=312 Identities=18% Similarity=0.259 Sum_probs=220.6
Q ss_pred cceEeeeeecccceeeeeeeeeeeeeccccccccccc--cccCceecccccc----hhHHhhhHhhhhcccchhcccCCC
Q 016207 14 EKMRVGVAMSSMKKKRFVFALVLSLIIDVGFAGRVVV--PLLQSYEKASYSR----GFSRNFGKIFDTSNYGILQLNNGL 87 (393)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 87 (393)
.+.+..||++...+.|+.-| ++|..+.|-+.+ ++.+|+++..|++ |||+.+|.++|.++.+. +-+
T Consensus 218 gnf~~f~ev~q~~~~~Vq~g-----~l~~~~e~~l~~~e~f~tpe~lv~~edqgl~~lsq~y~~~v~~~i~~~----~~~ 288 (687)
T COG3345 218 GNFAAFVEVHQHPFFRVQDG-----ILPFDGEWFLEEFESFVTPEVLVVLEDQGLNGLSQKYAELVRMEIVPR----PRV 288 (687)
T ss_pred cchhheeeeccCchhhhhhc-----ccccCceEecccccccCCceEEEEEcCCCcchHHHHHHHHHHhhcCcc----ccc
Confidence 45678899999999999988 999999999999 9999999999998 89999999999988762 225
Q ss_pred CCCCceEEechhhhCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCC----CCccccCCCCCCCHHHHHH
Q 016207 88 ASTPQMGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLK----GQLVPDTITFPSGIKALAD 163 (393)
Q Consensus 88 ~~~pp~GwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~----G~~~~d~~kFP~Gl~~l~d 163 (393)
.+++|+|||||++||++++++.|+++++.+ ++.|+|.|+||||||+ .|+++ |||.++.+|||+|+.+|++
T Consensus 289 ~kprPi~~nsWea~Yfd~t~e~ile~vk~a-----kk~gvE~FvlDDGwfg-~rndd~~slGDWlv~seKfPsgiE~li~ 362 (687)
T COG3345 289 KKPRPIGWNSWEAYYFDFTEEEILENVKEA-----KKFGVELFVLDDGWFG-GRNDDLKSLGDWLVNSEKFPSGIEELIE 362 (687)
T ss_pred CCCCcceeeceeeeeecCCHHHHHHHHHHH-----hhcCeEEEEEcccccc-ccCcchhhhhceecchhhccccHHHHHH
Confidence 789999999999999999999999999999 7889999999999998 45444 9999999999999999999
Q ss_pred HHHHcCCeEEEEeeCCcccc------------------------------CCCCcccccH---------HhHHHHHH-Hc
Q 016207 164 YVHGKGLKLGIYSDAGVFTC------------------------------QVRPGSLFHE---------KDDAPLFA-SW 203 (393)
Q Consensus 164 ~vh~~Gmk~Glw~~pg~~~c------------------------------~~~pgs~~~~---------~~~~~~~~-~w 203 (393)
.|++.||+||||++|++-.- ..+|.+..++ ...+++++ +|
T Consensus 363 ~I~e~Gl~fGIWlePemvs~dSdlfrqHPDWvvk~~G~p~~~~Rnqyvl~~s~p~vv~~l~~~l~qll~~~~v~ylkwdm 442 (687)
T COG3345 363 AIAENGLIFGIWLEPEMVSEDSDLFRQHPDWVVKVNGYPLMAGRNQYVLWLSNPIVVLDLSEDLVQLLLFHLVSYLKWDM 442 (687)
T ss_pred HHHHcCCccceeecchhcccchHHHhhCCCeEEecCCccccccccchhhhccChHHHHHhhhHHHHHHHhhhHHHHHHHh
Confidence 99999999999999985110 1234443343 34456666 77
Q ss_pred CCcEEEeecCCCCCCCccccch--HHHHHHHhcCCCceeeccCCCC---------CChhhhhhhc------cceeeecCC
Q 016207 204 GVDYLKYDNCFNLGIEPKKRYP--PMRDALNETGCSIFYSLCEWGV---------DDPALWAGKV------GNSWRTTGD 266 (393)
Q Consensus 204 GvdylK~D~~~~~~~~~~~~y~--~m~~AL~~agr~i~~slc~~g~---------~~P~~w~~~~------~n~~Ris~D 266 (393)
|..++|+|+.+.+.... ++|. .+-+-|+.-.+.|.|.-|..|. +.|..|++.. .+..|.+.+
T Consensus 443 nr~l~klg~~~~~~l~q-qry~ly~l~~~l~~k~~~i~FeScasGg~r~d~gml~~~~~~w~Sd~~dAi~r~~iqrg~s~ 521 (687)
T COG3345 443 NRELFKLGFLFWGALPQ-QRYQLYRLFDQLNLKFPHILFESCASGGERIDKGMLEYSPQLWCSDLTDAIGRLDIQRGGSY 521 (687)
T ss_pred CcceeecCCCCCccccc-hHHHHHHHHHHhhhcCCCchhhhhcccccccchHHhhhcccccCCCCcchhhhccccccCcc
Confidence 77777777777765433 3343 3334455567888898888764 2355676432 355677777
Q ss_pred CCC--ChhHHH--------HHHHhhcccccccCCCCc-cCCCcccccCCCcChhhhhh---HHHHHHHhc----Cceeec
Q 016207 267 IND--TWASMT--------SIADINDKWASYAGPGGW-NDPDMLEVGNGGMSYQEYRA---HFSIWALMK----APLLIG 328 (393)
Q Consensus 267 i~~--~W~~~~--------~~~~~~~~~~~~~gpg~w-nDpDmL~vg~~~lT~~E~rt---~~slwa~~g----sPLlig 328 (393)
+.| .|..-. +.+.......-++.-|+| +++|++. +|++|+.+ +.++.--+. .-.++.
T Consensus 522 ~~P~~~mGaHi~~~p~h~~~rm~~l~~rg~~a~~g~~g~elD~~~-----lsdeek~~~akqialyke~r~vl~~g~~~r 596 (687)
T COG3345 522 TYPPESMGAHISAVPNHQARRMTSLETRGLVAHFGFWGYELDCTI-----LSDEEKDLTAKQIALYKELRPVLDNGIIYR 596 (687)
T ss_pred cCChHHhhhhccCCCcHHHhhhhhhhhhhHHHHhhhhccCCCccc-----CCHHHHHHHHHHHHHHHHHHHHHhcccEEe
Confidence 776 332110 000000111112344566 7888865 46666554 344444333 233444
Q ss_pred CCCCCCCHHHHHhcCChhhHhhcC
Q 016207 329 CDVRNMTAETFEILSNKEVIAVNQ 352 (393)
Q Consensus 329 ~Dl~~l~~~~~~lL~N~eviainQ 352 (393)
.|.+..+ ..++.|++-||
T Consensus 597 ld~pd~t------~~~~avv~~d~ 614 (687)
T COG3345 597 LDLPDVT------VHGKAVVKEDQ 614 (687)
T ss_pred ecCCccc------hhHHHHHhhhH
Confidence 4544333 33445555565
No 9
>PLN02219 probable galactinol--sucrose galactosyltransferase 2
Probab=99.93 E-value=2.7e-24 Score=227.62 Aligned_cols=289 Identities=15% Similarity=0.146 Sum_probs=199.9
Q ss_pred CCCCc-----eEEechhhhCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCC----------------CC
Q 016207 88 ASTPQ-----MGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLK----------------GQ 146 (393)
Q Consensus 88 ~~~pp-----~GwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~----------------G~ 146 (393)
.++.| +|||||++||.++||+.|++.++.|.+.|.. +++++||||||....+.. -.
T Consensus 191 ~K~~p~~~D~~GWCTWdafy~dVt~~~I~~~l~~l~e~gip---~~~viIDDGwQsi~~~~~~~~~~~~~g~qf~~rL~~ 267 (775)
T PLN02219 191 KKKLPSFLDWFGWCTWDAFYTDVTAEGVDEGLKSLSEGGTP---PKFLIIDDGWQQIENKEKDENCVVQEGAQFATRLTG 267 (775)
T ss_pred cccCccccceeeEEEhhHhhccCCHHHHHHHHHHHHhCCCC---ceEEEEccCccccccccccccccccccchhhhhhcc
Confidence 57788 9999999999999999999999999887665 799999999998543311 12
Q ss_pred ccccCC--------CCCCCHHHHHHHHHH-cCCe-EEEEeeC---------Cc-----ccc-----CC------------
Q 016207 147 LVPDTI--------TFPSGIKALADYVHG-KGLK-LGIYSDA---------GV-----FTC-----QV------------ 185 (393)
Q Consensus 147 ~~~d~~--------kFP~Gl~~l~d~vh~-~Gmk-~Glw~~p---------g~-----~~c-----~~------------ 185 (393)
+..|++ .||.|||.+++.+|+ .|+| +|+|.+- +. +.+ ..
T Consensus 268 f~en~KF~~~~~~~~fp~Glk~~V~~iK~~~~vk~V~VWHAL~GYWGGv~P~~~~~~~Y~~~~~~p~~spg~~~~~pd~a 347 (775)
T PLN02219 268 IKENAKFQKNDQKNEQVSGLKHVVDDAKQRHNVKQVYVWHALAGYWGGVKPAAAGMEHYDSALAYPVQSPGVLGNQPDIV 347 (775)
T ss_pred ccccccccccccccCCCCcHHHHHHHHHhccCCcEEEEeeeccceecCcCCCCcccccccccccccccCCCccccCcchh
Confidence 233432 589999999999984 7887 7999753 11 000 00
Q ss_pred ------------CC-cccccHHhHHHHHHHcCCcEEEeecCCCCC-----C-CccccchHHHHHHHhc------CCCcee
Q 016207 186 ------------RP-GSLFHEKDDAPLFASWGVDYLKYDNCFNLG-----I-EPKKRYPPMRDALNET------GCSIFY 240 (393)
Q Consensus 186 ------------~p-gs~~~~~~~~~~~~~wGvdylK~D~~~~~~-----~-~~~~~y~~m~~AL~~a------gr~i~~ 240 (393)
.| .++.+++.....|++.|||+||+|...... . ...+..+...+||+++ +..++-
T Consensus 348 ~d~l~~~G~glV~P~~~~~FYd~~hsyLas~GVDgVKVDvQ~~Le~L~~~~ggrv~la~~y~~ALe~S~~r~F~~ng~I~ 427 (775)
T PLN02219 348 MDSLSVHGLGLVNPKKVFNFYNELHAYLASCGVDGVKVDVQNIIETLGAGHGGRVSLTRSYQQALEASIARNFTDNGCIS 427 (775)
T ss_pred hhhhhhCCccccCHHHHHHHHHHHHHHHHHcCCCEEEEchhhhHHHhhccCCcHHHHHHHHHHHHHHHHHHhCCCCCeEE
Confidence 11 245677888899999999999999976421 1 1122333455666543 445555
Q ss_pred eccCCCCCChhhhhhhccceeeecCCCCCChhHHH-HHHHhhcccccccCCCCccCCCcccccCCCcChhhhhhHHHHHH
Q 016207 241 SLCEWGVDDPALWAGKVGNSWRTTGDINDTWASMT-SIADINDKWASYAGPGGWNDPDMLEVGNGGMSYQEYRAHFSIWA 319 (393)
Q Consensus 241 slc~~g~~~P~~w~~~~~n~~Ris~Di~~~W~~~~-~~~~~~~~~~~~~gpg~wnDpDmL~vg~~~lT~~E~rt~~slwa 319 (393)
++|+. ....|..+.....|+|+|..|.++... -++-.+++-+-+.+.-.|+|+||+..-++ -.+.|.+..|
T Consensus 428 CMsh~---~d~i~~~k~sav~R~SDDF~P~dP~sh~~Hi~~nAyNSLllg~~v~PDWDMFqS~Hp-----~A~~HAaaRA 499 (775)
T PLN02219 428 CMCHN---TDGLYSAKQTAVVRASDDFYPRDPASHTIHISSVAYNTLFLGEFMQPDWDMFHSLHP-----AAEYHGAARA 499 (775)
T ss_pred ecccC---chhhhcccccceeecccccccCCCccCcchhhhhhhhhHHhccccccCchhceecCc-----cHHHHHHHHh
Confidence 55442 233555677889999999998876432 22222222223445557999999986443 4589999999
Q ss_pred HhcCceeecCCCCCCCHHHHHhcC--ChhhHhhcCCCCCCc-ceEeeeeccCCc---eEEEEccCCCeEEEEeccC
Q 016207 320 LMKAPLLIGCDVRNMTAETFEILS--NKEVIAVNQDPLGVQ-GRKVFGWVLCLD---IAWWLLSGIDVQKLKLSQH 389 (393)
Q Consensus 320 ~~gsPLlig~Dl~~l~~~~~~lL~--N~eviainQD~lg~~-~~~v~~~~~~~d---~~~w~~~~~~~~~~~~~~~ 389 (393)
++|+|+++||-+.+-+-+.+.-|. +-.|+..... |.+ ..+++.++...+ +.+|.+-.+.-++|+||=.
T Consensus 500 iSGGPIYvSD~PG~Hdf~LLk~LvlpDGsIlR~~~p--g~PTrDclF~Dp~~dg~slLKIwn~n~~~gviG~FNcq 573 (775)
T PLN02219 500 VGGCAIYVSDKPGNHNFDLLRKLVLPDGSVLRAQLP--GRPTRDCLFADPARDGTSLLKIWNVNKCTGVVGVFNCQ 573 (775)
T ss_pred hcCCcEEEecCCCCccHHHHHHhhCCCCceeccccC--CCcchhhhccccCCCCceEEEEEEcccccceEEEEecc
Confidence 999999999999888766664443 3445555543 554 666777775432 7788888999999999943
No 10
>PLN02355 probable galactinol--sucrose galactosyltransferase 1
Probab=99.93 E-value=3.6e-24 Score=227.10 Aligned_cols=288 Identities=17% Similarity=0.162 Sum_probs=198.6
Q ss_pred CCCCc-----eEEechhhhCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCC----------------C
Q 016207 88 ASTPQ-----MGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKG----------------Q 146 (393)
Q Consensus 88 ~~~pp-----~GwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G----------------~ 146 (393)
.++.| +|||||++||.++||+.|++.++.|++.|.. .++++||||||....|..+ +
T Consensus 195 ~K~~P~~ld~~GWCTW~afy~~Vt~~~I~~~l~~l~~~g~p---~~~viIDDGwQs~~~d~~~~~~~~~~~~q~~~rL~~ 271 (758)
T PLN02355 195 RKKMPDMLNWFGWCTWDAFYTNVTAEGVKQGLESLEKGGVT---PKFVIIDDGWQSVGMDPTGIECLADNSANFANRLTH 271 (758)
T ss_pred hccCCcccceeeEEehhHhhccCCHHHHHHHHHHHHhCCCC---ccEEEEeccccccccccccccccccccchhhhhhcc
Confidence 45778 9999999999999999999999999886655 7999999999985333222 2
Q ss_pred ccccCCCCC-------------CCHHHHHHHHHH-cCCe-EEEEeeC---------Ccc----------ccCC-------
Q 016207 147 LVPDTITFP-------------SGIKALADYVHG-KGLK-LGIYSDA---------GVF----------TCQV------- 185 (393)
Q Consensus 147 ~~~d~~kFP-------------~Gl~~l~d~vh~-~Gmk-~Glw~~p---------g~~----------~c~~------- 185 (393)
+..|. ||| .||+.+++.+|+ .|+| +|+|.+- +.. .+..
T Consensus 272 f~~n~-KF~~~~~~~~~~~~~~~Glk~~V~~iK~~~~vk~V~VWHAL~GYWGGv~P~~~~~~~Y~~~~~~p~~spGv~~~ 350 (758)
T PLN02355 272 IKENH-KFQKNGKEGHRVDDPALGLGHIVTEIKEKHSLKYVYVWHAITGYWGGVKPGVAGMEHYESKMSYPVSSPGVQSN 350 (758)
T ss_pred ccccc-cccccccccccccCCCCcHHHHHHHHHhhcCCcEEEEeeeecceecCcCCCCcccccccccccccccCCccccc
Confidence 23443 676 499999999985 7887 7999753 110 0101
Q ss_pred -----------------CC-cccccHHhHHHHHHHcCCcEEEeecCCCCC-----C-CccccchHHHHHHHhc------C
Q 016207 186 -----------------RP-GSLFHEKDDAPLFASWGVDYLKYDNCFNLG-----I-EPKKRYPPMRDALNET------G 235 (393)
Q Consensus 186 -----------------~p-gs~~~~~~~~~~~~~wGvdylK~D~~~~~~-----~-~~~~~y~~m~~AL~~a------g 235 (393)
+| .++.+++.....|++.|||+||+|...... . ...+..+...+||+++ +
T Consensus 351 ~~~~a~d~i~~~G~glv~Pe~~~~FY~~~hsyL~s~GVDgVKVD~Q~~le~l~~g~ggrv~la~~y~~ALe~S~~r~F~~ 430 (758)
T PLN02355 351 EPCDALESITTNGLGLVNPEKVFSFYNELHSYLASAGIDGVKVDVQNILETLGAGHGGRVKLARKYHQALEASIARNFPD 430 (758)
T ss_pred CcchhhhhcccCceeccCHHHHHHHHHHHHHHHHHcCCCeEEEchhhhHHHhhcCCCcHHHHHHHHHHHHHHHHHHhCCC
Confidence 12 135677778889999999999999976432 1 1222333455666542 4
Q ss_pred CCceeeccCCCCCChhhhhhhccceeeecCCCCCChhHHH-HHHHhhcccccccCCCCccCCCcccccCCCcChhhhhhH
Q 016207 236 CSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWASMT-SIADINDKWASYAGPGGWNDPDMLEVGNGGMSYQEYRAH 314 (393)
Q Consensus 236 r~i~~slc~~g~~~P~~w~~~~~n~~Ris~Di~~~W~~~~-~~~~~~~~~~~~~gpg~wnDpDmL~vg~~~lT~~E~rt~ 314 (393)
..++-++|+.+ ...|..+.....|+|+|..+.+.... -++-.+++-+-+.+...|+|+||+..-++ -.+.|
T Consensus 431 ngvI~CMs~~~---d~i~~~k~sav~R~SDDF~P~dP~sh~~Hi~~~AyNSLllg~~v~PDWDMF~S~hp-----~A~~H 502 (758)
T PLN02355 431 NGIISCMSHNT---DGLYSAKRTAVIRASDDFWPRDPASHTIHIASVAYNTIFLGEFMQPDWDMFHSLHP-----MAEYH 502 (758)
T ss_pred CceEEecccCc---hhhcccccceeeeeccccccCCCccCchhhhhhhhhhhhhccccccCcccceecCc-----cHHHH
Confidence 45555444422 23555677889999999999876432 22222233333445567999999986442 46789
Q ss_pred HHHHHHhcCceeecCCCCCCCHHHHHhcC--ChhhHhhcCCCCCCcc-eEeeeeccCC-c--eEEEEccCCCeEEEEecc
Q 016207 315 FSIWALMKAPLLIGCDVRNMTAETFEILS--NKEVIAVNQDPLGVQG-RKVFGWVLCL-D--IAWWLLSGIDVQKLKLSQ 388 (393)
Q Consensus 315 ~slwa~~gsPLlig~Dl~~l~~~~~~lL~--N~eviainQD~lg~~~-~~v~~~~~~~-d--~~~w~~~~~~~~~~~~~~ 388 (393)
.+..|++|+|+++||-+.+-+-+.+.-|. +-.|+..... |.+- .+++.++... . ..+|.+..+.-+||+||=
T Consensus 503 AaaRAisGGPIYvSD~PG~hdf~LLk~LvlpdGsIlR~~~p--g~PtrDclF~Dp~~dg~slLKIwn~nk~sGviG~FNc 580 (758)
T PLN02355 503 AAARAVGGCAIYVSDKPGQHDFNLLKKLVLPDGSILRAKLP--GRPTRDCLFSDPARDGKSLLKIWNLNEFTGVIGVFNC 580 (758)
T ss_pred HHHHhccCCcEEEecCCCCccHHHHHhhhCCCCceeccccC--CCcchhhhccccccCCceEEEEEEcCCcccEEEEEec
Confidence 99999999999999999887766654443 3445655543 4433 6666766542 3 677779999999999994
Q ss_pred C
Q 016207 389 H 389 (393)
Q Consensus 389 ~ 389 (393)
.
T Consensus 581 q 581 (758)
T PLN02355 581 Q 581 (758)
T ss_pred c
Confidence 3
No 11
>PLN02684 Probable galactinol--sucrose galactosyltransferase
Probab=99.91 E-value=4e-23 Score=218.65 Aligned_cols=283 Identities=18% Similarity=0.193 Sum_probs=195.4
Q ss_pred eEEechhhhCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCC------------C---ccccCCCCCC-
Q 016207 93 MGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKG------------Q---LVPDTITFPS- 156 (393)
Q Consensus 93 ~GwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G------------~---~~~d~~kFP~- 156 (393)
+|||||++||.+++++.|++.++.|.+.|.. .++++||||||....|... + +..+ .|||+
T Consensus 204 fGWCTWdafy~dVt~~~I~~~l~~l~~~g~p---~~~vIIDDGwQs~~~d~~~~~~~~~~~q~~~rL~~f~en-~KF~~~ 279 (750)
T PLN02684 204 FGWCTWDAFYQEVTQEGVEAGLKSLAAGGTP---PKFVIIDDGWQSVGGDPTVEAGDEKKEQPLLRLTGIKEN-EKFKKK 279 (750)
T ss_pred eeEEEhhHhhccCCHHHHHHHHHHHHhCCCC---ceEEEEecccccccccccccccccccchhhhhhccCccc-cccccc
Confidence 7999999999999999999999999887665 7999999999985443210 1 2344 68874
Q ss_pred -----CHHHHHHHHH-HcCCe-EEEEeeC---------Cc-----cc-----c----------C--------------CC
Q 016207 157 -----GIKALADYVH-GKGLK-LGIYSDA---------GV-----FT-----C----------Q--------------VR 186 (393)
Q Consensus 157 -----Gl~~l~d~vh-~~Gmk-~Glw~~p---------g~-----~~-----c----------~--------------~~ 186 (393)
|||.+++.+| +.|+| +|+|.+- +. +. + + -.
T Consensus 280 ~~p~~Glk~~V~~iK~~~~vk~V~VWHAL~GYWGGv~P~~~~~~~Y~s~~~~p~~s~gv~~~~p~~~~d~l~~~g~glv~ 359 (750)
T PLN02684 280 DDPNVGIKNIVNIAKEKHGLKYVYVWHAITGYWGGVRPGVKEMEEYGSVMKYPNVSKGVVENDPTWKTDVMTLQGLGLVN 359 (750)
T ss_pred cCCCccHHHHHHHHHhhcCCcEEEEEeeecccccccCCCCcchhhccccccccccCccccccCccccccccccCcccccC
Confidence 9999999997 77887 7999753 11 00 0 0 01
Q ss_pred C-cccccHHhHHHHHHHcCCcEEEeecCCCCC-----C-CccccchHHHHHHHhc------CCCceeeccCCCCCChhhh
Q 016207 187 P-GSLFHEKDDAPLFASWGVDYLKYDNCFNLG-----I-EPKKRYPPMRDALNET------GCSIFYSLCEWGVDDPALW 253 (393)
Q Consensus 187 p-gs~~~~~~~~~~~~~wGvdylK~D~~~~~~-----~-~~~~~y~~m~~AL~~a------gr~i~~slc~~g~~~P~~w 253 (393)
| .++.+++.....|++.|||+||+|...... . ...+..++..+||+++ +..++-++|+. ....|
T Consensus 360 P~~~~~FYd~~hsyL~s~GVDgVKVD~Q~~le~l~~~~ggrv~l~~ay~~ALe~S~~r~F~~ngvI~CMs~~---~d~i~ 436 (750)
T PLN02684 360 PKKVYKFYNELHSYLADAGIDGVKVDVQCILETLGAGLGGRVELTRQYHQALDASVARNFPDNGCIACMSHN---TDALY 436 (750)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEChhhhHHHhhcccCcHHHHHHHHHHHHHHHHHHhCCCCCeEEecccC---chhhh
Confidence 1 145677888899999999999999976321 1 1122233455666543 33455544432 22356
Q ss_pred hhhccceeeecCCCCCChhHHH-HHHHhhcccccccCCCCccCCCcccccCCCcChhhhhhHHHHHHHhcCceeecCCCC
Q 016207 254 AGKVGNSWRTTGDINDTWASMT-SIADINDKWASYAGPGGWNDPDMLEVGNGGMSYQEYRAHFSIWALMKAPLLIGCDVR 332 (393)
Q Consensus 254 ~~~~~n~~Ris~Di~~~W~~~~-~~~~~~~~~~~~~gpg~wnDpDmL~vg~~~lT~~E~rt~~slwa~~gsPLlig~Dl~ 332 (393)
..+.....|.|+|..+.+.... .++-.+++-+-+.+.-.|+|+||+..-++ -.+.|.+..|++|+|+++||.+.
T Consensus 437 ~sk~sav~R~SDDF~p~dP~sh~~Hi~~~AyNSLllg~~v~PDWDMFqS~hp-----~A~~HAaaRAisGGPIYvSD~PG 511 (750)
T PLN02684 437 CSKQTAVVRASDDFYPRDPVSHTIHIAAVAYNSVFLGEFMQPDWDMFHSLHP-----AAEYHASARAISGGPLYVSDAPG 511 (750)
T ss_pred cccccceeeeccccccCCCccchhhhhhhhhhhhhhccccccCcccceecCc-----cHHHHHHHHhhcCCceEEecCCC
Confidence 6677889999999998775432 22222233233445557999999976543 45899999999999999999998
Q ss_pred CCCHHHHHhcC--ChhhHhhcCCCCCCcc-eEeeeeccCCc---eEEEEccCCCeEEEEeccC
Q 016207 333 NMTAETFEILS--NKEVIAVNQDPLGVQG-RKVFGWVLCLD---IAWWLLSGIDVQKLKLSQH 389 (393)
Q Consensus 333 ~l~~~~~~lL~--N~eviainQD~lg~~~-~~v~~~~~~~d---~~~w~~~~~~~~~~~~~~~ 389 (393)
+-+-+.+.-|. +-.|+..... |.+- .+++.++...+ ..+|.+-.+.-++|+||=.
T Consensus 512 ~Hdf~LLk~LvlpDGsIlR~~~p--g~PTrDcLF~DP~~dg~slLKIwn~n~~tGViG~FNcq 572 (750)
T PLN02684 512 KHNFELLKKLVLPDGSILRARLP--GRPTRDCLFSDPARDGVSLLKIWNMNKYTGVLGVYNCQ 572 (750)
T ss_pred CccHHHHHhhhCCCCcccccccC--CccchhhhccCcccCCccEEEEEEecCCCceEEEEecc
Confidence 87766554433 3445555543 4333 56677766543 6788899999999999943
No 12
>PF05691 Raffinose_syn: Raffinose synthase or seed imbibition protein Sip1; InterPro: IPR008811 This family consists of several raffinose synthase proteins, also known as seed imbibition (Sip1) proteins. Raffinose (O-alpha- D-galactopyranosyl- (1-->6)- O-alpha- D-glucopyranosyl-(1-->2)- O-beta- D-fructofuranoside) is a widespread oligosaccharide in plant seeds and other tissues. Raffinose synthase (2.4.1.82 from EC) is the key enzyme that channels sucrose into the raffinose oligosaccharide pathway [].
Probab=99.89 E-value=3.8e-22 Score=212.82 Aligned_cols=284 Identities=22% Similarity=0.259 Sum_probs=192.8
Q ss_pred eEEechhhhCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCC------------C-----Cc---c----
Q 016207 93 MGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLK------------G-----QL---V---- 148 (393)
Q Consensus 93 ~GwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~------------G-----~~---~---- 148 (393)
+|||||++||.+++++.|++-++.+.+.|.. ..+++||||||...++.. | +| .
T Consensus 197 lGwCTWdaf~~~v~~~~i~~~l~~L~~~gi~---~~~viIDDGWQ~~~~~~~~~~~~~~~~~~~g~q~~~rl~~~~en~k 273 (747)
T PF05691_consen 197 LGWCTWDAFYQDVTEEGILEGLKSLEEGGIP---PRFVIIDDGWQSVDNDGDDPSKDGMNLVQEGAQFPRRLTDFKENSK 273 (747)
T ss_pred hccccHHHhccccCHHHHHHHHHHHHhCCCC---ceEEEEecchhcccccCcccccccccccccccccchhhhhhhhhhh
Confidence 6999999999999999999999999887665 679999999998543322 1 11 0
Q ss_pred --c-----cCCCCCCCHHHHHHHHHHc--CCe-EEEEeeC-Ccc----------------ccC-----------------
Q 016207 149 --P-----DTITFPSGIKALADYVHGK--GLK-LGIYSDA-GVF----------------TCQ----------------- 184 (393)
Q Consensus 149 --~-----d~~kFP~Gl~~l~d~vh~~--Gmk-~Glw~~p-g~~----------------~c~----------------- 184 (393)
- .+++||.||+.+++.||++ |+| +|+|.+- |+. .+.
T Consensus 274 F~~~~~~~~~~~~~~GL~~~V~~ik~~~~~Ik~V~VWHAL~GYWgGi~P~~~~~~~~k~~~~~~spg~~~~~~d~~~d~~ 353 (747)
T PF05691_consen 274 FRAYKSGKSPEAFPSGLKHFVSDIKEKFPGIKYVYVWHALCGYWGGISPDGMLAYNYKLVYPKLSPGLQGNMPDLAVDSI 353 (747)
T ss_pred hhhccCCCcccCCcccHHHHHHHHHhhCCCCCEEEEeehhcceecCcCCCCccccccceeecccCCcccccCcccccccc
Confidence 0 1246999999999999987 887 7999752 110 000
Q ss_pred -------CCC-cccccHHhHHHHHHHcCCcEEEeecCCCCCC------CccccchHHHHHHHhc------CCCceeeccC
Q 016207 185 -------VRP-GSLFHEKDDAPLFASWGVDYLKYDNCFNLGI------EPKKRYPPMRDALNET------GCSIFYSLCE 244 (393)
Q Consensus 185 -------~~p-gs~~~~~~~~~~~~~wGvdylK~D~~~~~~~------~~~~~y~~m~~AL~~a------gr~i~~slc~ 244 (393)
-.| .++.+++.....+++.|||+||+|....... ...+..+++.+||+++ +..++-++|+
T Consensus 354 ~~~g~glv~p~~~~~FYd~~hsyL~s~GVDgVKVD~Q~~l~~l~~~~ggrv~la~ay~~AL~~S~~r~F~~~~vI~CMsh 433 (747)
T PF05691_consen 354 VKGGLGLVDPEDAFRFYDDFHSYLASAGVDGVKVDVQAILETLGEGYGGRVELARAYQDALEASVARHFSGNGVINCMSH 433 (747)
T ss_pred ccCcccccCHHHHHHHHHHHHHHHHHcCCCEEEEchhhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhCCCCCeEEecCC
Confidence 011 2455777888899999999999999765321 1122223445555432 3456665554
Q ss_pred CCCCChhhhh-hhccceeeecCCCCCChhHH---------HHHHHhhcccccccCCCCccCCCcccccCCCcChhhhhhH
Q 016207 245 WGVDDPALWA-GKVGNSWRTTGDINDTWASM---------TSIADINDKWASYAGPGGWNDPDMLEVGNGGMSYQEYRAH 314 (393)
Q Consensus 245 ~g~~~P~~w~-~~~~n~~Ris~Di~~~W~~~---------~~~~~~~~~~~~~~gpg~wnDpDmL~vg~~~lT~~E~rt~ 314 (393)
.+ ...|. .+.....|+|+|..|.+..- .-++-.+++-+-+.+...|+|+||+..-+ ...+.|
T Consensus 434 ~~---~~l~~~~~~~av~R~SDDF~P~~p~s~p~g~~w~h~~Hi~~nAyNsL~~g~~~~PDwDMF~S~h-----~~A~~H 505 (747)
T PF05691_consen 434 NP---DNLYHSTKQSAVVRNSDDFFPRDPASDPNGVFWLHTWHIAHNAYNSLLLGQFVWPDWDMFQSSH-----PAAEFH 505 (747)
T ss_pred Cc---cchhcccccccceeccccccCCCCCCCccccchhhHHHHHHHHHHHHHHHhhcCCCcccccccC-----ccHHHH
Confidence 32 23454 45567899999999865422 11222222222234555789999997643 356789
Q ss_pred HHHHHHhcCceeecCCCCCCCHHHHHh--cCChhhHhhcCCCCCCcceEeeeecc-CCc--eEEEEccCCCeEEEEecc
Q 016207 315 FSIWALMKAPLLIGCDVRNMTAETFEI--LSNKEVIAVNQDPLGVQGRKVFGWVL-CLD--IAWWLLSGIDVQKLKLSQ 388 (393)
Q Consensus 315 ~slwa~~gsPLlig~Dl~~l~~~~~~l--L~N~eviainQD~lg~~~~~v~~~~~-~~d--~~~w~~~~~~~~~~~~~~ 388 (393)
.+..|++|+|++|+|.+.+.+-+.+.- +.+..|+.....++ ...+.++.++. ++. ..+|.+-...-++|+||=
T Consensus 506 AaaRaiSGGPVYiSD~pG~hd~~LLk~LvlpDG~ilR~~~pg~-Pt~d~Lf~dp~~d~~~lLKi~n~n~~~gvig~FN~ 583 (747)
T PF05691_consen 506 AAARAISGGPVYISDKPGKHDFDLLKKLVLPDGSILRADHPGR-PTRDCLFEDPLRDGKSLLKIWNLNKFTGVIGVFNC 583 (747)
T ss_pred HHHHhhcCCCEEEeeCCCCCCHHHHHHhhCCCCceeccccCCC-CChhhhcccCCCCCceeEEEEecCCccceEEEEec
Confidence 999999999999999998887665543 45556777766522 34567778876 333 677777777779999994
No 13
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=99.89 E-value=3.2e-22 Score=212.05 Aligned_cols=283 Identities=18% Similarity=0.153 Sum_probs=187.4
Q ss_pred eEEechhhhCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCC-------------C--------Ccccc-
Q 016207 93 MGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLK-------------G--------QLVPD- 150 (393)
Q Consensus 93 ~GwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~-------------G--------~~~~d- 150 (393)
.|||||++||.++|++.|++-++.+.+.|.. ..+++||||||.-..+.+ | ++..|
T Consensus 215 fGWCTWdAfy~~Vt~egI~~gl~~L~~~Gip---~~~vIIDDGWQsi~~d~~~~~~~~~~~~~~~g~q~~~rL~~f~en~ 291 (777)
T PLN02711 215 FGWCTWDAFYLTVHPQGVWEGVKGLVDGGCP---PGLVLIDDGWQSICHDEDPISDQEGMNRTVAGEQMPCRLLKFEENY 291 (777)
T ss_pred ceEEehhHhcccCCHHHHHHHHHHHHhCCCC---ccEEEEcCCcccccccCcccccccccccccccchhhhhhccccccc
Confidence 6999999999999999999999999887765 689999999998432211 1 12233
Q ss_pred --------CCCCCCCHHHHHHHHHHc--CCe-EEEEeeC---------Ccc--------ccC------------------
Q 016207 151 --------TITFPSGIKALADYVHGK--GLK-LGIYSDA---------GVF--------TCQ------------------ 184 (393)
Q Consensus 151 --------~~kFP~Gl~~l~d~vh~~--Gmk-~Glw~~p---------g~~--------~c~------------------ 184 (393)
+..||.|||.+++.||++ |+| +|+|.+- +.. .+.
T Consensus 292 KF~~~~~~~~~~p~Glk~~v~~iK~~~~~vk~VyVWHAL~GYWGGv~P~~~~~~~~~~~~p~~spg~~~~~~d~~~d~~~ 371 (777)
T PLN02711 292 KFRDYVSPKSLSNKGMGAFIRDLKEEFKTVDYVYVWHALCGYWGGLRPNVPGLPESKVVAPKLSPGLKMTMEDLAVDKIV 371 (777)
T ss_pred cccccccccCCCCCcHHHHHHHHHhhCCCCCEEEEeeeccCcccCcCCCCCCCccceeeccccCcccccccccccccccc
Confidence 345678999999999984 687 7999753 110 000
Q ss_pred ------CCC-cccccHHhHHHHHHHcCCcEEEeecCCCCCC---C---ccccchHHHHHHHhc------CCCceeeccCC
Q 016207 185 ------VRP-GSLFHEKDDAPLFASWGVDYLKYDNCFNLGI---E---PKKRYPPMRDALNET------GCSIFYSLCEW 245 (393)
Q Consensus 185 ------~~p-gs~~~~~~~~~~~~~wGvdylK~D~~~~~~~---~---~~~~y~~m~~AL~~a------gr~i~~slc~~ 245 (393)
-.| .++.+++.....+++.|||+||+|-...... . ..+..++..+||+++ +..++-++|..
T Consensus 372 ~~g~glv~Pe~~~~FY~~~hs~Las~GVDgVKVDvQ~~Le~l~~~~Ggrv~la~ay~~ALe~S~~r~F~~ng~I~CMs~~ 451 (777)
T PLN02711 372 NNGVGLVPPELAYQMYEGLHSHLQSVGIDGVKVDVIHLLEMLCEEYGGRVELAKAYYKALTASVRKHFNGNGVIASMEHC 451 (777)
T ss_pred cCcccccCHHHHHHHHHHHHHHHHHcCCCeEEEchhhhHhhhcccCCcHHHHHHHHHHHHHHHHHHhCCCCCeEeecccC
Confidence 012 1456777888999999999999998654211 1 122334555666432 34455555432
Q ss_pred CCCChh-hh-hhhccceeeecCCCCCChhHHH---------HHHHhhcccccccCCCCccCCCcccccCCCcChhhhhhH
Q 016207 246 GVDDPA-LW-AGKVGNSWRTTGDINDTWASMT---------SIADINDKWASYAGPGGWNDPDMLEVGNGGMSYQEYRAH 314 (393)
Q Consensus 246 g~~~P~-~w-~~~~~n~~Ris~Di~~~W~~~~---------~~~~~~~~~~~~~gpg~wnDpDmL~vg~~~lT~~E~rt~ 314 (393)
+. .+ ..+.....|+|+|..+.-+.-. .++-.+++-+-+.+...|+|+||+..-+ .-.+.|
T Consensus 452 ----~d~~~~~tk~~av~R~SDDF~p~dP~sh~~g~~W~~~~Hi~~~AyNSLllg~~v~PDWDMF~S~H-----p~A~~H 522 (777)
T PLN02711 452 ----NDFMFLGTEAISLGRVGDDFWCTDPSGDPNGTFWLQGCHMVHCAYNSLWMGNFIHPDWDMFQSTH-----PCAEFH 522 (777)
T ss_pred ----chhhhccCcccceeeecccccCCCCccccccccccccceeeeehhhhhhhcccccCCchhhhccC-----chHHHH
Confidence 22 22 1345677899999986533211 1222222223344555789999997644 366889
Q ss_pred HHHHHHhcCceeecCCCCCCCHHHHHhc--CChhhHhhcCCCCCCcceEeeeeccCC-c--eEEEEccCCCeEEEEecc
Q 016207 315 FSIWALMKAPLLIGCDVRNMTAETFEIL--SNKEVIAVNQDPLGVQGRKVFGWVLCL-D--IAWWLLSGIDVQKLKLSQ 388 (393)
Q Consensus 315 ~slwa~~gsPLlig~Dl~~l~~~~~~lL--~N~eviainQD~lg~~~~~v~~~~~~~-d--~~~w~~~~~~~~~~~~~~ 388 (393)
.+..|++|+|+++||-+.+-+-+.+.-| .+-.|+.....++ ...++++.++... . ..+|.+-...-++|+||=
T Consensus 523 AaaRAisGGPIYVSD~pG~Hdf~LLk~LvlpdGsIlR~~~pg~-PtrDcLF~DP~~dg~slLKIwn~nk~tGviG~FNc 600 (777)
T PLN02711 523 AASRAISGGPIYVSDSVGKHNFPLLKRLVLPDGSILRCQYYAL-PTRDCLFEDPLHDGKTMLKIWNLNKFTGVIGAFNC 600 (777)
T ss_pred HHHHhhcCCCEEEecCCCCccHHHHHhhhCCCCcEecccCCCC-ccchhhccccccCCceEEEEEeecCCcceEEEEEe
Confidence 9999999999999999988776655433 3445666665422 3345677777753 3 667777777779999994
No 14
>PLN02982 galactinol-raffinose galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl compounds
Probab=99.75 E-value=3.2e-17 Score=174.19 Aligned_cols=285 Identities=18% Similarity=0.174 Sum_probs=183.4
Q ss_pred eEEechhhhCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCC-----------------C---------
Q 016207 93 MGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKG-----------------Q--------- 146 (393)
Q Consensus 93 ~GwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G-----------------~--------- 146 (393)
.|||||.+||.+++++.|.+-.+.+++.|.. ..+++||||||.-..|.++ +
T Consensus 224 FGWCTWDAFY~~V~p~GV~~Gv~~l~~gG~p---prfvIIDDGWQsi~~d~~~~~~~~~~~~~~g~q~~~RL~~~~En~K 300 (865)
T PLN02982 224 FGWCTWDAFYLTVDPVGVWHGVKEFAEGGVP---PRFLIIDDGWQSINFDGDNPNEDAKNLVLGGTQMTARLYRFDECEK 300 (865)
T ss_pred ceEEeechhhcccCHHHHHHHHHHHhcCCCC---ccEEEEecchhhccccccCCchhhhhccccccchhhhhhcchhhhh
Confidence 6999999999999999999999999776665 5799999999975433111 0
Q ss_pred ---------ccccC------------------------------------------------------------------
Q 016207 147 ---------LVPDT------------------------------------------------------------------ 151 (393)
Q Consensus 147 ---------~~~d~------------------------------------------------------------------ 151 (393)
..+++
T Consensus 301 Frky~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~a~~~~~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 380 (865)
T PLN02982 301 FRNYKGGSMLGPDPPHFDPKKPKMLIYKAIEREHAEKARKKAIESGVTDLSEFDAKIKQLKKELDAMFDGEEKSVSSESE 380 (865)
T ss_pred hhccccccccCCCcccccccccchhhhcccchhhhhhcccccccccccccchhhhhhhhhhhhccccccccccccccccc
Confidence 00111
Q ss_pred -----CCCCCCHHHHHHHHHHc--CCe-EEEEeeC---------Ccc-------ccCC----------------------
Q 016207 152 -----ITFPSGIKALADYVHGK--GLK-LGIYSDA---------GVF-------TCQV---------------------- 185 (393)
Q Consensus 152 -----~kFP~Gl~~l~d~vh~~--Gmk-~Glw~~p---------g~~-------~c~~---------------------- 185 (393)
+.=|.|||.+++.||++ |+| +++|.+- +.. .+..
T Consensus 381 ~~~~~~~~~~Glk~~v~~ik~k~~~vk~VyVWHAL~GYWGGV~P~~~~y~~k~~~p~~spg~~~~~~d~a~d~i~~~G~g 460 (865)
T PLN02982 381 SSGSCKVSGSGMKAFTRDLRTKFKGLDDIYVWHALCGAWGGVRPGTTHLNAKVVPARLSPGLDGTMNDLAVDKIVEGGIG 460 (865)
T ss_pred cccccccCcccHHHHHHHHHHhCCCCCEEEEeeeccCcccCcCCCCCCCcceEEecccCccccccCcchhhhheecCcee
Confidence 12235999999999865 466 7888653 110 0000
Q ss_pred --CC-cccccHHhHHHHHHHcCCcEEEeecCCCCCC---C---ccccchHHHHHHH----hc--CCCceeeccCCCCCCh
Q 016207 186 --RP-GSLFHEKDDAPLFASWGVDYLKYDNCFNLGI---E---PKKRYPPMRDALN----ET--GCSIFYSLCEWGVDDP 250 (393)
Q Consensus 186 --~p-gs~~~~~~~~~~~~~wGvdylK~D~~~~~~~---~---~~~~y~~m~~AL~----~a--gr~i~~slc~~g~~~P 250 (393)
+| .+..+++.....|++.|||+||+|....... . ..+..++..+||. +. ++.++-++|+.+ .
T Consensus 461 lv~P~~~~~FYd~~hsyLas~GVDgVKVDvQ~~Le~L~~~~ggRv~La~ay~~al~~Sv~r~F~~ng~I~CM~~~~---~ 537 (865)
T PLN02982 461 LVHPSQAGDFYDSMHSYLASVGITGVKVDVIHTLEYVCEEYGGRVELAKAYYDGLSESLAKNFNGTGIIASMQQCN---D 537 (865)
T ss_pred ccCHHHHHHHHHHHHHHHHHcCCCeEEEchhhhHHHhhccCCcHHHHHHHHHHHHHHHHHHhCCCCCeEeecccCc---h
Confidence 12 1456778888999999999999998764211 1 1222234444443 32 334555444321 1
Q ss_pred hhh-hhhccceeeecCCCCCChhH------HH---HHHHhhcccccccCCCCccCCCcccccCCCcChhhhhhHHHHHHH
Q 016207 251 ALW-AGKVGNSWRTTGDINDTWAS------MT---SIADINDKWASYAGPGGWNDPDMLEVGNGGMSYQEYRAHFSIWAL 320 (393)
Q Consensus 251 ~~w-~~~~~n~~Ris~Di~~~W~~------~~---~~~~~~~~~~~~~gpg~wnDpDmL~vg~~~lT~~E~rt~~slwa~ 320 (393)
..| ..+..-+.|+|+|..+.-+. .. .++-.+++-+-+.+...|+|+||+..-+ .-.+.|.+..|+
T Consensus 538 ~~~~~tk~sav~R~SDDF~p~dP~shp~g~~wlq~~Hi~~~AyNSLl~G~~v~PDWDMFqS~H-----~~A~fHAaaRAI 612 (865)
T PLN02982 538 FFFLGTKQISMGRVGDDFWFQDPNGDPMGVYWLQGVHMIHCAYNSMWMGQIIQPDWDMFQSDH-----LCAEFHAGSRAI 612 (865)
T ss_pred hhhccCCcceeeeccccccCCCCCcCccccccccceeeeehhhhhHhhccccccCchhccccC-----chHHHHHHHHhh
Confidence 233 23456678999999864322 11 1222222223344556899999997643 356889999999
Q ss_pred hcCceeecCCCCCCCHHHHHhcC--ChhhHhhcCCCCCCcceEeeeeccC-Cc--eEEEEccCCCeEEEEeccC
Q 016207 321 MKAPLLIGCDVRNMTAETFEILS--NKEVIAVNQDPLGVQGRKVFGWVLC-LD--IAWWLLSGIDVQKLKLSQH 389 (393)
Q Consensus 321 ~gsPLlig~Dl~~l~~~~~~lL~--N~eviainQD~lg~~~~~v~~~~~~-~d--~~~w~~~~~~~~~~~~~~~ 389 (393)
+|+|+++||-+.+-+-+.+.-|. +-.|+.-...++ -..++++.++.. +. ..+|.+-.-.-.||+||=.
T Consensus 613 sGGPIYvSD~pG~Hdf~lLk~LvlpDG~IlR~~~pg~-PTrDcLF~DPl~DGks~LKIWN~Nk~~GViG~FNCQ 685 (865)
T PLN02982 613 CGGPVYVSDSVGGHDFDLLKKLVFPDGTIPRCQHYAL-PTRDCLFKNPLFDKKTILKIWNFNKFGGVIGAFNCQ 685 (865)
T ss_pred cCCCEEEeeCCCCccHHHHHhhhcCCCceeccCCCCC-CCcchhccCcccCCceEEEEEeccCcCceEEEEEec
Confidence 99999999999888766654443 334566555433 445677887774 33 6778777777889999943
No 15
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.72 E-value=3.2e-16 Score=154.55 Aligned_cols=172 Identities=18% Similarity=0.374 Sum_probs=125.6
Q ss_pred CCceEEechhhhCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcC
Q 016207 90 TPQMGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKG 169 (393)
Q Consensus 90 ~pp~GwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~G 169 (393)
++|+ ||||+.+++.+||++|++.|+.+++.|+ .++.|+||++|+. ..|+++.|+++||+ ++.++++||++|
T Consensus 13 ~~p~-W~~W~~~~~~~s~~~v~~~~~~~~~~~i---P~d~i~iD~~w~~----~~g~f~~d~~~FPd-p~~mi~~l~~~G 83 (303)
T cd06592 13 RSPI-WSTWARYKADINQETVLNYAQEIIDNGF---PNGQIEIDDNWET----CYGDFDFDPTKFPD-PKGMIDQLHDLG 83 (303)
T ss_pred CCCc-cCChhhhccCcCHHHHHHHHHHHHHcCC---CCCeEEeCCCccc----cCCccccChhhCCC-HHHHHHHHHHCC
Confidence 4565 9999999999999999999999988655 4899999999987 46789999999998 999999999999
Q ss_pred CeEEEEeeCCccc--------------------------------c----CCCCcccccHHhHHHHHH-HcCCcEEEeec
Q 016207 170 LKLGIYSDAGVFT--------------------------------C----QVRPGSLFHEKDDAPLFA-SWGVDYLKYDN 212 (393)
Q Consensus 170 mk~Glw~~pg~~~--------------------------------c----~~~pgs~~~~~~~~~~~~-~wGvdylK~D~ 212 (393)
+|+++|++|.... | .++|.+++++...++.+. ++|||++|+|+
T Consensus 84 ~k~~l~i~P~i~~~s~~~~e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~ 163 (303)
T cd06592 84 FRVTLWVHPFINTDSENFREAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGIDSFKFDA 163 (303)
T ss_pred CeEEEEECCeeCCCCHHHHhhhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCCcEEEeCC
Confidence 9999999985210 1 356778888877766655 99999999999
Q ss_pred CCCCCCC----------ccccch-HHHHHHHhcCCCceeeccCCCCCChhhhhhhccceeeecCCCCCChhHH---HHHH
Q 016207 213 CFNLGIE----------PKKRYP-PMRDALNETGCSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWASM---TSIA 278 (393)
Q Consensus 213 ~~~~~~~----------~~~~y~-~m~~AL~~agr~i~~slc~~g~~~P~~w~~~~~n~~Ris~Di~~~W~~~---~~~~ 278 (393)
+.....+ ....|. .+.++..+.+ +++++-+.|... ..++-.| +.|...+|+.+ ..++
T Consensus 164 ~E~~~~p~~~~~~~~~~~~n~y~~~~~~~~~~~~-~~~~~Rsg~~g~------~~~~~~w--~GD~~s~W~~~~gl~~~i 234 (303)
T cd06592 164 GEASYLPQDYVTEDPLLNPDEYTRLYAEMVAEFG-DLIEVRAGWRSQ------GLPLFVR--MMDKDSSWGGDNGLKSLI 234 (303)
T ss_pred CCcccCCcccccCCcccCHHHHHHHHHHHHHhhc-cceEEEeeeecC------CCCeeEE--cCCCCCCCCCCcCHHHHH
Confidence 8753211 011232 3445544444 666665443321 1122334 67888999876 5554
Q ss_pred H
Q 016207 279 D 279 (393)
Q Consensus 279 ~ 279 (393)
.
T Consensus 235 ~ 235 (303)
T cd06592 235 P 235 (303)
T ss_pred H
Confidence 3
No 16
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=99.45 E-value=4.6e-12 Score=124.99 Aligned_cols=167 Identities=20% Similarity=0.274 Sum_probs=120.3
Q ss_pred hhCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcCCeEEEEeeCC
Q 016207 100 FFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAG 179 (393)
Q Consensus 100 ~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Glw~~pg 179 (393)
.-+...|++++++.++.+++.|+. ++.+.||++|+.. ...|+++.|+++||+ ++.|++.+|++|+++++|++|.
T Consensus 16 ~~~~y~~~~~v~~~~~~~~~~~iP---~d~~~lD~~w~~~--~~~~~f~~d~~~FPd-~~~~i~~l~~~G~~~~~~~~P~ 89 (308)
T cd06593 16 SRSFYYDEEEVNEFADGMRERNLP---CDVIHLDCFWMKE--FQWCDFEFDPDRFPD-PEGMLSRLKEKGFKVCLWINPY 89 (308)
T ss_pred HcccCCCHHHHHHHHHHHHHcCCC---eeEEEEecccccC--CcceeeEECcccCCC-HHHHHHHHHHCCCeEEEEecCC
Confidence 333448999999999999775544 7889999999852 222589999999999 9999999999999999999985
Q ss_pred ccc--------------------------------c---CCCCcccccHHhHHHHHHHcCCcEEEeecCCCCCC------
Q 016207 180 VFT--------------------------------C---QVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGI------ 218 (393)
Q Consensus 180 ~~~--------------------------------c---~~~pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~------ 218 (393)
... + .++|.+.+++....+.+.++|||++|+|++.....
T Consensus 90 i~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~Gid~~~~D~~e~~p~~~~~~~ 169 (308)
T cd06593 90 IAQKSPLFKEAAEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLDMGVDCFKTDFGERIPTDVVYYD 169 (308)
T ss_pred CCCCchhHHHHHHCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHHhCCcEEecCCCCCCCccccccC
Confidence 310 0 25677888888888888899999999999864211
Q ss_pred --Cc---cccch-----HHHHHHHhc---CCCceeeccCCCCCChhhhhhhccceeeecCCCCCChhHHHHHHHh
Q 016207 219 --EP---KKRYP-----PMRDALNET---GCSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWASMTSIADI 280 (393)
Q Consensus 219 --~~---~~~y~-----~m~~AL~~a---gr~i~~slc~~g~~~P~~w~~~~~n~~Ris~Di~~~W~~~~~~~~~ 280 (393)
.. ...|. .+.+++++. .|+++++-+.+... ..|+-.| +.|+..+|+.+...+..
T Consensus 170 g~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~~Rs~~~Gs------qry~~~w--~GD~~s~w~~L~~~i~~ 236 (308)
T cd06593 170 GSDGEKMHNYYALLYNKAVYEATKEVKGEGEAVVWARSAWAGS------QKYPVHW--GGDCESTFEGMAESLRG 236 (308)
T ss_pred CCCcceeeeHHHHHHHHHHHHHHHHhcCCCCeEEEEcCCcccc------ccCCCEE--CCCcccCHHHHHHHHHH
Confidence 11 12221 344455433 35788875544211 2355556 88999999988777654
No 17
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=99.40 E-value=1.1e-12 Score=127.25 Aligned_cols=215 Identities=16% Similarity=0.186 Sum_probs=118.6
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCcc-ccCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccc
Q 016207 104 NISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLV-PDTITFPSGIKALADYVHGKGLKLGIYSDAGVFT 182 (393)
Q Consensus 104 ~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~-~d~~kFP~Gl~~l~d~vh~~Gmk~Glw~~pg~~~ 182 (393)
.+|.+..++.+|++ +++|++|+.||+||.....+...+.+ +.+. ..|+.|++|.++||.++-||..-....
T Consensus 28 g~~t~~~k~yIDfA-----a~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~---~dl~elv~Ya~~KgVgi~lw~~~~~~~ 99 (273)
T PF10566_consen 28 GATTETQKRYIDFA-----AEMGIEYVLVDAGWYGWEKDDDFDFTKPIPD---FDLPELVDYAKEKGVGIWLWYHSETGG 99 (273)
T ss_dssp SSSHHHHHHHHHHH-----HHTT-SEEEEBTTCCGS--TTT--TT-B-TT-----HHHHHHHHHHTT-EEEEEEECCHTT
T ss_pred CCCHHHHHHHHHHH-----HHcCCCEEEeccccccccccccccccccCCc---cCHHHHHHHHHHcCCCEEEEEeCCcch
Confidence 68999999999999 77899999999999853322222222 1111 249999999999999999999764310
Q ss_pred cCCCCcccccHHhHHHHHHHcCCcEEEeecCCCCCCCccccchHHHHHHHhcCCCceeeccCCCCCChhhhhhhccceee
Q 016207 183 CQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYSLCEWGVDDPALWAGKVGNSWR 262 (393)
Q Consensus 183 c~~~pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~AL~~agr~i~~slc~~g~~~P~~w~~~~~n~~R 262 (393)
- .......++..++++++|||..||+||....++...+.|..+.+. ++...+++.++ |...|.++.+.|-|++=
T Consensus 100 ~--~~~~~~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~--AA~~~LmvnfH--g~~kPtG~~RTyPN~mT 173 (273)
T PF10566_consen 100 N--VANLEKQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILED--AAEYKLMVNFH--GATKPTGLRRTYPNLMT 173 (273)
T ss_dssp B--HHHHHCCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHH--HHHTT-EEEET--TS---TTHHHCSTTEEE
T ss_pred h--hHhHHHHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHH--HHHcCcEEEec--CCcCCCcccccCccHHH
Confidence 0 000122357778999999999999999998776666666555443 36778999988 55678887766666541
Q ss_pred ecCCCC---CChh---HHHHHHHh-hcccccccCCCCc-----cC-CCcccccCCCcChhhhhhHHHHHHHhcCceeecC
Q 016207 263 TTGDIN---DTWA---SMTSIADI-NDKWASYAGPGGW-----ND-PDMLEVGNGGMSYQEYRAHFSIWALMKAPLLIGC 329 (393)
Q Consensus 263 is~Di~---~~W~---~~~~~~~~-~~~~~~~~gpg~w-----nD-pDmL~vg~~~lT~~E~rt~~slwa~~gsPLlig~ 329 (393)
-..=-. ..|. .....-+. .-..+.++||.-| +. ...-..............++++..++-|||+.-+
T Consensus 174 ~EgVrG~E~~~~~~~~~~~p~h~~~lPFTR~l~GpmDyTPg~f~~~~~~~~~~~~~~~~tT~ahQLAl~Vv~~Splq~~a 253 (273)
T PF10566_consen 174 REGVRGQEYNKWSGDGGNPPEHNTTLPFTRMLAGPMDYTPGAFSNRTPFDPNYPNPRVQTTRAHQLALYVVFESPLQMLA 253 (273)
T ss_dssp E--S--GGGGGTT-TTS-HCCHHCTCCCTCCCCS-B------SSEEGCGT-TTSS-BECS-HHHHHHHHHHS--SEEEE-
T ss_pred HHHhhhhhhcccccCCCCCCcceeeccchhcCcCCcccCChhcccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 110000 1122 00000010 1122344555322 10 0000111122333457789999999999999988
Q ss_pred CCC
Q 016207 330 DVR 332 (393)
Q Consensus 330 Dl~ 332 (393)
|.+
T Consensus 254 D~P 256 (273)
T PF10566_consen 254 DSP 256 (273)
T ss_dssp S-H
T ss_pred cCH
Confidence 764
No 18
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=99.34 E-value=5.7e-11 Score=115.04 Aligned_cols=168 Identities=20% Similarity=0.262 Sum_probs=120.1
Q ss_pred CCCCceE-EechhhhCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCc--cccCCCCCCCHHHHHHH
Q 016207 88 ASTPQMG-WNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQL--VPDTITFPSGIKALADY 164 (393)
Q Consensus 88 ~~~pp~G-wnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~--~~d~~kFP~Gl~~l~d~ 164 (393)
++.||.. +-.|...+...+++++++.++.+.+.++. ++.|.||++|+.. .|++ +.|+++||+ ++.++++
T Consensus 3 p~~~P~wa~G~~~~~~~~~~~~~v~~~~~~~~~~~iP---~d~~~lD~~~~~~----~~~f~~~~d~~~Fpd-p~~~i~~ 74 (265)
T cd06589 3 PALPPKWAFGYWLSRYGYGDQDKVLEVIDGMRENDIP---LDGFVLDDDYTDG----YGDFTFDWDAGKFPN-PKSMIDE 74 (265)
T ss_pred CCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCC---ccEEEECcccccC----CceeeeecChhhCCC-HHHHHHH
Confidence 3455651 23555555678999999999999886554 8999999999973 3445 999999999 9999999
Q ss_pred HHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHH-HHcCCcEEEeecCCCCCCCc----------------cccch--
Q 016207 165 VHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLF-ASWGVDYLKYDNCFNLGIEP----------------KKRYP-- 225 (393)
Q Consensus 165 vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~-~~wGvdylK~D~~~~~~~~~----------------~~~y~-- 225 (393)
+|++|+|+.+|+.|.. .++....++.+ .+.|||++|+|++....... ...|.
T Consensus 75 l~~~g~~~~~~~~P~v---------~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~~~~~~~~~~~~hn~y~~~ 145 (265)
T cd06589 75 LHDNGVKLVLWIDPYI---------REWWAEVVKKLLVSLGVDGFWTDMGEPSPGDGNIFTGGVVGRVKHEEMHNAYPLL 145 (265)
T ss_pred HHHCCCEEEEEeChhH---------HHHHHHHHHHhhccCCCCEEeccCCCCCcCCCccccCCcCCCccHHHHcchhHHH
Confidence 9999999999999965 56665555554 89999999999986542210 12232
Q ss_pred ---HHHHHHHh---cCCCceeeccCCCCCChhhhhhhccceeeecCCCCCChhHHHHHHHh
Q 016207 226 ---PMRDALNE---TGCSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWASMTSIADI 280 (393)
Q Consensus 226 ---~m~~AL~~---agr~i~~slc~~g~~~P~~w~~~~~n~~Ris~Di~~~W~~~~~~~~~ 280 (393)
.+.+++++ ..|+++++-+.+... ..++-.| +.|+..+|+.+...+..
T Consensus 146 ~~~~~~~~~~~~~~~~r~~~~sRs~~~Gs------qry~~~W--~GD~~stW~~l~~~i~~ 198 (265)
T cd06589 146 YAEATYEALRKNSKNKRPFILSRSGYAGS------QRYAGMW--SGDNTSTWGYLRSQIPA 198 (265)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEcCCcccc------cCcCcee--CCcccCCHHHHHHHHHH
Confidence 23444543 346777776654221 2454455 78999999998777654
No 19
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.22 E-value=2.8e-10 Score=113.06 Aligned_cols=165 Identities=16% Similarity=0.194 Sum_probs=117.1
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcCCeEEEEeeCCcccc
Q 016207 104 NISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTC 183 (393)
Q Consensus 104 ~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Glw~~pg~~~c 183 (393)
+.++++|++.++.+.+.+++ ++.|.||++|+.......++++.|+++||+ ++.|++.||++|+|+-+|+.|....+
T Consensus 25 ~~~q~~v~~~~~~~r~~~iP---~d~i~ld~~~~~~~~~~~~~f~~d~~~FPd-p~~mi~~L~~~g~k~~~~i~P~i~~~ 100 (317)
T cd06599 25 PDAQEALLEFIDKCREHDIP---CDSFHLSSGYTSIEGGKRYVFNWNKDRFPD-PAAFVAKFHERGIRLAPNIKPGLLQD 100 (317)
T ss_pred ccHHHHHHHHHHHHHHcCCC---eeEEEEeccccccCCCceeeeecCcccCCC-HHHHHHHHHHCCCEEEEEeCCcccCC
Confidence 46799999999999886654 899999999987422233568899999998 99999999999999999999853110
Q ss_pred ------------------------------------CCCCcccccHHhHH-HHHHHcCCcEEEeecCCCCCC--------
Q 016207 184 ------------------------------------QVRPGSLFHEKDDA-PLFASWGVDYLKYDNCFNLGI-------- 218 (393)
Q Consensus 184 ------------------------------------~~~pgs~~~~~~~~-~~~~~wGvdylK~D~~~~~~~-------- 218 (393)
.++|.+.++....+ +.+.+.|||++|.|++.....
T Consensus 101 ~~~y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~~ 180 (317)
T cd06599 101 HPRYKELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLGIDSTWNDNNEYEIWDDDAVCDG 180 (317)
T ss_pred CHHHHHHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCCCcEEEecCCCCccCCCcceecC
Confidence 25677788886655 678899999999999854210
Q ss_pred --Cc------cccch-----HHHHHHHhc---CCCceeeccCCCCCChhhhhhhccceeeecCCCCCChhHHHHHHHh
Q 016207 219 --EP------KKRYP-----PMRDALNET---GCSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWASMTSIADI 280 (393)
Q Consensus 219 --~~------~~~y~-----~m~~AL~~a---gr~i~~slc~~g~~~P~~w~~~~~n~~Ris~Di~~~W~~~~~~~~~ 280 (393)
.+ ...|. ...+++++. .|+++++-+.+... ..++-.| ++|+..+|+.+...+..
T Consensus 181 ~g~~~~~~~~~n~y~~l~~~a~~~~~~~~~~~~r~f~ltRs~~~G~------qry~~~W--sGD~~s~W~~L~~~i~~ 250 (317)
T cd06599 181 FGKPGTIGELRPVQPNLMARASHEAQAEHYPNRRPYIVSRSGFAGI------QRYAQTW--SGDNRTSWKTLRYNIAM 250 (317)
T ss_pred CCCccchhhcccchHHHHHHHHHHHHHHhCCCCCcEEEEcCCcccc------cCCcCee--CCCcccCHHHHHHHHHH
Confidence 00 11222 234444432 36777765443211 2455556 88999999988777653
No 20
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.18 E-value=1.3e-09 Score=108.26 Aligned_cols=164 Identities=16% Similarity=0.186 Sum_probs=118.1
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCC--CCCCCccccCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccc
Q 016207 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLR--DLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFT 182 (393)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~r--d~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Glw~~pg~~~ 182 (393)
-+++++++.++.+.+.+++ ++.|.||.+|..... ...|+++.|+++||+ .+.|++++|++|+|+-+|+.|....
T Consensus 21 ~~~~~v~~~~~~~~~~~iP---~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPd-p~~mi~~L~~~G~k~~~~v~P~v~~ 96 (317)
T cd06598 21 RNWQEVDDTIKTLREKDFP---LDAAILDLYWFGKDIDKGHMGNLDWDRKAFPD-PAGMIADLAKKGVKTIVITEPFVLK 96 (317)
T ss_pred CCHHHHHHHHHHHHHhCCC---ceEEEEechhhcCcccCCceeeeEeccccCCC-HHHHHHHHHHcCCcEEEEEcCcccC
Confidence 4899999999999886554 899999999987332 245789999999999 9999999999999999999885210
Q ss_pred ------------------------------------cCCCCcccccHHhHHHHHHHcCCcEEEeecCCCCCCC-------
Q 016207 183 ------------------------------------CQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIE------- 219 (393)
Q Consensus 183 ------------------------------------c~~~pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~------- 219 (393)
..++|.+.++..+..+.+.+.|||++|.|++......
T Consensus 97 ~~~~y~e~~~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~Gvdg~w~D~~Ep~~~~~~~~~~~ 176 (317)
T cd06598 97 NSKNWGEAVKAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKLIDQGVTGWWGDLGEPEVHPPDMCHHK 176 (317)
T ss_pred CchhHHHHHhCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHhhhCCccEEEecCCCccccCCccccCC
Confidence 0257778888877777889999999999999642110
Q ss_pred -----ccccch-----HHHHHHHh---cCCCceeeccCCCCCChhhhhhhccc-eeeecCCCCCChhHHHHHHHh
Q 016207 220 -----PKKRYP-----PMRDALNE---TGCSIFYSLCEWGVDDPALWAGKVGN-SWRTTGDINDTWASMTSIADI 280 (393)
Q Consensus 220 -----~~~~y~-----~m~~AL~~---agr~i~~slc~~g~~~P~~w~~~~~n-~~Ris~Di~~~W~~~~~~~~~ 280 (393)
....|. ...+++++ ..|+++++-+.+.. ...|+. .| +.|+..+|+.+...+..
T Consensus 177 g~~~~~hN~y~~~~~~~~~e~~~~~~~~~r~~~~~Rs~~~G------sqry~~~~W--sGD~~s~W~~L~~~i~~ 243 (317)
T cd06598 177 GKAAEVHNIYGHLWAKSIYEGYQQNYPNERPFILMRAGFAG------SQRYGVIPW--SGDVGRTWDGLKSQPNA 243 (317)
T ss_pred CcHhHHhhHHHHHHHHHHHHHHHHhcCCCCeEEEEecCcCc------cccCcCCcc--CCCCcCCHHHHHHHHHH
Confidence 011232 22334443 24677776544321 124443 35 68999999988877654
No 21
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=99.15 E-value=2e-09 Score=107.86 Aligned_cols=160 Identities=19% Similarity=0.213 Sum_probs=115.1
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccc--
Q 016207 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFT-- 182 (393)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Glw~~pg~~~-- 182 (393)
-|++++++.++.+.+.+++ ++.|.||.+|+. ..+.++.|+++||+ .+.|++.+|++|+|+-+|+.|....
T Consensus 21 ~~~~~v~~~~~~~~~~~iP---~d~i~lD~~~~~----~~~~f~~d~~~fPd-p~~m~~~l~~~g~~~~~~~~P~v~~~~ 92 (339)
T cd06604 21 YPEEEVREIADEFRERDIP---CDAIYLDIDYMD----GYRVFTWDKERFPD-PKELIKELHEQGFKVVTIIDPGVKVDP 92 (339)
T ss_pred CCHHHHHHHHHHHHHhCCC---cceEEECchhhC----CCCceeeccccCCC-HHHHHHHHHHCCCEEEEEEeCceeCCC
Confidence 5899999999999886654 899999999986 35678999999998 9999999999999999999885311
Q ss_pred --------------------------c---------CCCCcccccHHhHHHHHHHcCCcEEEeecCCCCCC---------
Q 016207 183 --------------------------C---------QVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGI--------- 218 (393)
Q Consensus 183 --------------------------c---------~~~pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~--------- 218 (393)
| .++|.+.++.....+.+.+.|||++|+|++.....
T Consensus 93 ~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~Gvdg~w~D~~Ep~~~~~~~~~~~p 172 (339)
T cd06604 93 GYDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFVDLGVDGIWNDMNEPAVFNTPGKTTMP 172 (339)
T ss_pred CChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHhhCCCceEeecCCCccccCCcccccCC
Confidence 0 24666777777777778899999999999853210
Q ss_pred ------------C---ccccch-----HHHHHHHhc---CCCceeeccCCCCCChhhhhhhccceeeecCCCCCChhHHH
Q 016207 219 ------------E---PKKRYP-----PMRDALNET---GCSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWASMT 275 (393)
Q Consensus 219 ------------~---~~~~y~-----~m~~AL~~a---gr~i~~slc~~g~~~P~~w~~~~~n~~Ris~Di~~~W~~~~ 275 (393)
. ....|. ...+++++. .|+++++-+.+... ..++-.| +.|+..+|+.+.
T Consensus 173 ~~~~~~~~~~~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~------qry~~~W--~GD~~ssW~~L~ 244 (339)
T cd06604 173 RDAVHRLDGGGGTHEEVHNVYGLLMARATYEGLKKARPNERPFILTRAGYAGI------QRYAAVW--TGDNRSSWEHLR 244 (339)
T ss_pred ccceeeCCCCCCcHhHhcchhhHHHHHHHHHHHHHhCCCCCcEEEEecccccc------ccccccc--CCcccCCHHHHH
Confidence 0 011232 233444433 47877765443221 1344445 789999999887
Q ss_pred HHHHh
Q 016207 276 SIADI 280 (393)
Q Consensus 276 ~~~~~ 280 (393)
..+..
T Consensus 245 ~~i~~ 249 (339)
T cd06604 245 LSIPM 249 (339)
T ss_pred HHHHH
Confidence 76653
No 22
>PRK10658 putative alpha-glucosidase; Provisional
Probab=99.11 E-value=3.1e-09 Score=115.14 Aligned_cols=165 Identities=21% Similarity=0.305 Sum_probs=119.8
Q ss_pred hCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcCCeEEEEeeCCc
Q 016207 101 FACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGV 180 (393)
Q Consensus 101 ~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Glw~~pg~ 180 (393)
++.+.+|+++++.|+.+.+.++. ++.|.+|+.|... . ..++++.|+++||+ .+.|++++|++|+|+.+|+.|..
T Consensus 276 ~~~~~~e~~v~~~~~~~r~~~iP---~d~i~lD~~w~~~-~-~~~~f~wd~~~FPd-p~~mi~~L~~~G~k~~~~i~P~i 349 (665)
T PRK10658 276 FTTNYDEATVNSFIDGMAERDLP---LHVFHFDCFWMKE-F-QWCDFEWDPRTFPD-PEGMLKRLKAKGLKICVWINPYI 349 (665)
T ss_pred cccCCCHHHHHHHHHHHHHcCCC---ceEEEEchhhhcC-C-ceeeeEEChhhCCC-HHHHHHHHHHCCCEEEEeccCCc
Confidence 34456899999999999886654 7899999999863 1 23578999999999 99999999999999999999953
Q ss_pred cc-------------------------------c----CCCCcccccHHhHHHHHHHcCCcEEEeecCCCC--------C
Q 016207 181 FT-------------------------------C----QVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNL--------G 217 (393)
Q Consensus 181 ~~-------------------------------c----~~~pgs~~~~~~~~~~~~~wGvdylK~D~~~~~--------~ 217 (393)
.. | .++|.+.+++....+.+.+.|||.+|.|+.... +
T Consensus 350 ~~~s~~f~e~~~~gy~vk~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~d~Gvdgfw~D~gE~~p~d~~~~~G 429 (665)
T PRK10658 350 AQKSPLFKEGKEKGYLLKRPDGSVWQWDKWQPGMAIVDFTNPDACKWYADKLKGLLDMGVDCFKTDFGERIPTDVVWFDG 429 (665)
T ss_pred CCCchHHHHHHHCCeEEECCCCCEeeeeecCCCceeecCCCHHHHHHHHHHHHHHHhcCCcEEEecCCceeeccceecCC
Confidence 10 0 357888888877788888999999999986431 1
Q ss_pred CCc---cccch-----HHHHHHHh-c--CCCceeeccCCCCCChhhhhhhccceeeecCCCCCChhHHHHHHH
Q 016207 218 IEP---KKRYP-----PMRDALNE-T--GCSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWASMTSIAD 279 (393)
Q Consensus 218 ~~~---~~~y~-----~m~~AL~~-a--gr~i~~slc~~g~~~P~~w~~~~~n~~Ris~Di~~~W~~~~~~~~ 279 (393)
.++ ...|. ...+++++ . .|+++++-|.+... ..|+-.| +.|+..+|+.+...+.
T Consensus 430 ~~~~~~hN~Y~~l~~ka~~e~l~~~~~~~r~~i~tRs~~aGs------Qry~~~W--sGD~~stw~~l~~si~ 494 (665)
T PRK10658 430 SDPQKMHNYYTYLYNKTVFDVLKETRGEGEAVLFARSATVGG------QQFPVHW--GGDCYSNYESMAESLR 494 (665)
T ss_pred CcHHHhcchhHHHHHHHHHHHHHHhcCCCceEEEEecccCCC------CCCCCEE--CCCCCCCHHHHHHHHH
Confidence 111 12232 33445544 2 36788776654221 2455456 7899999999877664
No 23
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=99.10 E-value=5.5e-09 Score=102.73 Aligned_cols=163 Identities=15% Similarity=0.083 Sum_probs=114.6
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCC-----CCCCCCccccCCCCCCCHHHHHHHHHHcCCeEEEEeeCC
Q 016207 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPL-----RDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAG 179 (393)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~-----rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Glw~~pg 179 (393)
.|++++++.|+.+.+.+++ ++.|.||.+|.... .+..++++.|+++||+ .+.|+++||++|+|+-+|+.|.
T Consensus 22 ~s~~ev~~v~~~~r~~~iP---~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPd-p~~mi~~Lh~~G~k~v~~v~P~ 97 (292)
T cd06595 22 YSDEEYLALMDRFKKHNIP---LDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPD-PEKLLQDLHDRGLKVTLNLHPA 97 (292)
T ss_pred CCHHHHHHHHHHHHHhCCC---ccEEEEecccccccccccccCCcceeEEChhcCCC-HHHHHHHHHHCCCEEEEEeCCC
Confidence 5899999999999986654 89999999997632 2456789999999999 9999999999999999999996
Q ss_pred ccc---------------c-----------CCCCcccccH-HhHHHHHHHcCCcEEEeecCCCCCC-----CccccchH-
Q 016207 180 VFT---------------C-----------QVRPGSLFHE-KDDAPLFASWGVDYLKYDNCFNLGI-----EPKKRYPP- 226 (393)
Q Consensus 180 ~~~---------------c-----------~~~pgs~~~~-~~~~~~~~~wGvdylK~D~~~~~~~-----~~~~~y~~- 226 (393)
... + .++|.+..+. +...+.+.+.|||.++.|++..... .+..-...
T Consensus 98 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~~Gidg~W~D~~E~~~~~~~~~~~~~~~~~~ 177 (292)
T cd06595 98 DGIRAHEDQYPEMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEKQGVDFWWLDWQQGNRTRTPGLDPLWWLNHV 177 (292)
T ss_pred cccCCCcHHHHHHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHhcCCcEEEecCCCCcccccCCcchHHHHHHH
Confidence 310 0 2456666544 5556778899999999999754321 11000000
Q ss_pred HHHHH-HhcCCCceeeccCCCCCChhhhhhhccceeeecCCCCCChhHHHHHHH
Q 016207 227 MRDAL-NETGCSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWASMTSIAD 279 (393)
Q Consensus 227 m~~AL-~~agr~i~~slc~~g~~~P~~w~~~~~n~~Ris~Di~~~W~~~~~~~~ 279 (393)
..... +..+|+++++-+.+.. ..+|+-.| ++|+..+|+.+...+.
T Consensus 178 ~y~~~~~~~~r~f~lsRs~~~G------~qry~~~W--sGD~~s~W~~l~~~i~ 223 (292)
T cd06595 178 HYLDSARNGRRPLIFSRWAGLG------SHRYPIGF--SGDTIISWASLAFQPY 223 (292)
T ss_pred HHHHhhccCCCcEEEEeecccC------CCcCCCcc--CCCcccCHHHHHHHHH
Confidence 01111 1246888887554321 12566677 8999999998875543
No 24
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=99.09 E-value=4.2e-09 Score=104.75 Aligned_cols=160 Identities=20% Similarity=0.267 Sum_probs=115.7
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccc--
Q 016207 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFT-- 182 (393)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Glw~~pg~~~-- 182 (393)
-|++++++.++.+.+.++. ++.|.||.+|+. ..++++.|+++||+ .+.|++.+|++|+|+-+|+.|....
T Consensus 21 ~~~~~v~~~~~~~~~~~iP---~d~i~lD~~~~~----~~~~f~~d~~~FPd-p~~~i~~l~~~g~k~~~~~~P~i~~~~ 92 (317)
T cd06600 21 YPQDKVVEVVDIMQKEGFP---YDVVFLDIHYMD----SYRLFTWDPYRFPE-PKKLIDELHKRNVKLVTIVDPGIRVDQ 92 (317)
T ss_pred CCHHHHHHHHHHHHHcCCC---cceEEEChhhhC----CCCceeechhcCCC-HHHHHHHHHHCCCEEEEEeeccccCCC
Confidence 5899999999999886554 899999999986 35678899999999 9999999999999999999886310
Q ss_pred --------------c---------------------CCCCcccccHHhHHHHHH-HcCCcEEEeecCCCCCC-Cccccch
Q 016207 183 --------------C---------------------QVRPGSLFHEKDDAPLFA-SWGVDYLKYDNCFNLGI-EPKKRYP 225 (393)
Q Consensus 183 --------------c---------------------~~~pgs~~~~~~~~~~~~-~wGvdylK~D~~~~~~~-~~~~~y~ 225 (393)
| .++|++.++....++.+. +.|||++|.|++..... +....|.
T Consensus 93 ~~~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~gvdg~w~D~~Ep~~~~~~hn~y~ 172 (317)
T cd06600 93 NYSPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQGVDGIWLDMNEPSDFEKVHNLYG 172 (317)
T ss_pred CChHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCCCceEEeeCCCCccHHHhcchhh
Confidence 0 246667777766666554 99999999999875432 1122332
Q ss_pred -----HHHHHHHh---cCCCceeeccCCCCCChhhhhhhccceeeecCCCCCChhHHHHHHHh
Q 016207 226 -----PMRDALNE---TGCSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWASMTSIADI 280 (393)
Q Consensus 226 -----~m~~AL~~---agr~i~~slc~~g~~~P~~w~~~~~n~~Ris~Di~~~W~~~~~~~~~ 280 (393)
...+++++ ..|+++++-+.+... ..++-.| +.|+..+|+.+...+..
T Consensus 173 ~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~------qry~~~W--~GD~~s~W~~L~~~i~~ 227 (317)
T cd06600 173 LYEAMATAEGFRTSHPRNRIFILTRSGFAGS------QKYAAIW--TGDNTASWDDLKLSIPL 227 (317)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEecccccc------CCccceE--CCcccccHHHHHHHHHH
Confidence 22344433 357888876654321 1344444 78999999988766643
No 25
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=99.08 E-value=7.1e-09 Score=103.14 Aligned_cols=162 Identities=17% Similarity=0.178 Sum_probs=112.7
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcCCeEEEEeeCCcccc-
Q 016207 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTC- 183 (393)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Glw~~pg~~~c- 183 (393)
-+++++++.++.+.+.++ .++.|.||..|....+ .|+++.|+++||+ ++.+++++|++|+|+-+|+.|.....
T Consensus 21 ~~~~ev~~~~~~~~~~~i---P~d~i~lD~~~~~~~~--~~~f~~d~~~FPd-p~~mi~~L~~~G~kv~~~i~P~v~~~~ 94 (319)
T cd06591 21 KTQEELLDVAKEYRKRGI---PLDVIVQDWFYWPKQG--WGEWKFDPERFPD-PKAMVRELHEMNAELMISIWPTFGPET 94 (319)
T ss_pred CCHHHHHHHHHHHHHhCC---CccEEEEechhhcCCC--ceeEEEChhhCCC-HHHHHHHHHHCCCEEEEEecCCcCCCC
Confidence 499999999999988555 4899999988876221 2589999999999 99999999999999999998863110
Q ss_pred ---------------------------------CCCCcccccHH-hHHHHHHHcCCcEEEeecCCCCCCC----------
Q 016207 184 ---------------------------------QVRPGSLFHEK-DDAPLFASWGVDYLKYDNCFNLGIE---------- 219 (393)
Q Consensus 184 ---------------------------------~~~pgs~~~~~-~~~~~~~~wGvdylK~D~~~~~~~~---------- 219 (393)
.++|.+.++.. ...+.+.+.|||++|.|++......
T Consensus 95 ~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~Ep~~~~~~~~~~~~~~ 174 (319)
T cd06591 95 ENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYDKGVDAWWLDAAEPEYSVYDFGLDNYRY 174 (319)
T ss_pred hhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCccCCcccccCccc
Confidence 24566677653 3445677999999999998643110
Q ss_pred -------ccccch-----HHHHHHHhc---CCCceeeccCCCCCChhhhhhhccc-eeeecCCCCCChhHHHHHHHh
Q 016207 220 -------PKKRYP-----PMRDALNET---GCSIFYSLCEWGVDDPALWAGKVGN-SWRTTGDINDTWASMTSIADI 280 (393)
Q Consensus 220 -------~~~~y~-----~m~~AL~~a---gr~i~~slc~~g~~~P~~w~~~~~n-~~Ris~Di~~~W~~~~~~~~~ 280 (393)
....|. ...+++++. .|+++++-+.+.. ...|+. .| +.|+..+|+.+...+..
T Consensus 175 ~~~~~~~~hN~y~~~~~~~~~e~~~~~~~~~r~f~~sRs~~~G------sqry~~~~W--~GD~~s~w~~L~~~i~~ 243 (319)
T cd06591 175 HLGPGLEVGNAYPLMHAKGIYEGQRAAGDEKRVVILTRSAWAG------SQRYGALVW--SGDIDSSWETLRRQIAA 243 (319)
T ss_pred CCCCchhhhhhhHHHHHHHHHHHHHHhCCCCCceEEEeccccc------cccccCcee--CCCccccHHHHHHHHHH
Confidence 011232 233444443 4777776543321 124543 45 68999999988776653
No 26
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=99.07 E-value=4.1e-09 Score=105.52 Aligned_cols=159 Identities=15% Similarity=0.189 Sum_probs=117.9
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccc--
Q 016207 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFT-- 182 (393)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Glw~~pg~~~-- 182 (393)
-|++++++.++.+.+.++ .++.|.||..|.. ..++++.|+++||+ .+.|+++||++|+|+.+|+.|....
T Consensus 21 ~~~~ev~~v~~~~r~~~I---P~D~i~lDidy~~----~~~~Ft~d~~~FPd-p~~mv~~L~~~G~klv~~i~P~i~~g~ 92 (332)
T cd06601 21 SNRSDLEEVVEGYRDNNI---PLDGLHVDVDFQD----NYRTFTTNGGGFPN-PKEMFDNLHNKGLKCSTNITPVISYGG 92 (332)
T ss_pred CCHHHHHHHHHHHHHcCC---CCceEEEcCchhc----CCCceeecCCCCCC-HHHHHHHHHHCCCeEEEEecCceecCc
Confidence 489999999999998555 4899999999986 45789999999999 9999999999999999999996421
Q ss_pred --c-------CCCCcccccHHhHHHHHHHcCCcEEEeecCCCCCC---------C--------c-------------ccc
Q 016207 183 --C-------QVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGI---------E--------P-------------KKR 223 (393)
Q Consensus 183 --c-------~~~pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~---------~--------~-------------~~~ 223 (393)
+ -++|.+.++.....+.|.+.|||+++.|++-.... . . ...
T Consensus 93 ~~~~~~~~pDftnp~ar~wW~~~~~~l~~~Gv~~~W~DmnEp~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~hN~ 172 (332)
T cd06601 93 GLGSPGLYPDLGRPDVREWWGNQYKYLFDIGLEFVWQDMTTPAIMPSYGDMKGFPPRLLVTDDSYENNVKRKPAIELWNL 172 (332)
T ss_pred cCCCCceeeCCCCHHHHHHHHHHHHHHHhCCCceeecCCCCcccccCCCccCCCCCcccccCCccccccCCchHHHHhhh
Confidence 1 35788888887778888889999999998743200 0 0 011
Q ss_pred ch-----HHHHHHHh-----cCCCceeeccCCCCCChhhhhhhccceeeecCCCCCChhHHHHHHH
Q 016207 224 YP-----PMRDALNE-----TGCSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWASMTSIAD 279 (393)
Q Consensus 224 y~-----~m~~AL~~-----agr~i~~slc~~g~~~P~~w~~~~~n~~Ris~Di~~~W~~~~~~~~ 279 (393)
|. ...+++++ ..|+++++-+.+... ..|+-.| ++|+..+|+.+...+.
T Consensus 173 Y~~~~~~a~~e~~~~~~~~~~~RpfiltRS~~aGs------qrY~~~W--sGDn~stW~~L~~si~ 230 (332)
T cd06601 173 YSYNLHKATWHGLNNLNARKNKRNFIIGRGSYAGM------QRFAGLW--TGDNSSSWDFLQINIA 230 (332)
T ss_pred hHHHHHHHHHHHHHHhhcCCCCCcEEEEecCcCcc------CCcCcee--CCCcccCHHHHHHHHH
Confidence 21 23334432 247888876544221 2566666 8999999998876654
No 27
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=99.02 E-value=3.2e-09 Score=109.52 Aligned_cols=160 Identities=23% Similarity=0.318 Sum_probs=107.8
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcCCeEEEEeeCCcccc-
Q 016207 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTC- 183 (393)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Glw~~pg~~~c- 183 (393)
-|++++++.++.+.+.++ .++.++||++|+. ..++++.|+++||+ ++.+++.+|++|+++++|+.|....+
T Consensus 40 ~~~~~v~~~i~~~~~~~i---P~d~~~iD~~~~~----~~~~f~~d~~~FPd-~~~~~~~l~~~G~~~~~~~~P~v~~~~ 111 (441)
T PF01055_consen 40 YNQDEVREVIDRYRSNGI---PLDVIWIDDDYQD----GYGDFTWDPERFPD-PKQMIDELHDQGIKVVLWVHPFVSNDS 111 (441)
T ss_dssp TSHHHHHHHHHHHHHTT-----EEEEEE-GGGSB----TTBTT-B-TTTTTT-HHHHHHHHHHTT-EEEEEEESEEETTT
T ss_pred CCHHHHHHHHHHHHHcCC---Cccceeccccccc----cccccccccccccc-hHHHHHhHhhCCcEEEEEeecccCCCC
Confidence 569999999999988554 4899999999987 34578999999998 99999999999999999998852110
Q ss_pred -------------------------------------CCCCcccccHHhHHHHHHHc-CCcEEEeecCCCCCC-------
Q 016207 184 -------------------------------------QVRPGSLFHEKDDAPLFASW-GVDYLKYDNCFNLGI------- 218 (393)
Q Consensus 184 -------------------------------------~~~pgs~~~~~~~~~~~~~w-GvdylK~D~~~~~~~------- 218 (393)
.++|.+.+++....+.+.+. |||++|.|++.....
T Consensus 112 ~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~ 191 (441)
T PF01055_consen 112 PDYENYDEAKEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYGVDGWWLDFGEPSSFDSNNTLP 191 (441)
T ss_dssp TB-HHHHHHHHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST-SEEEEESTTTBSSTTTBSBC
T ss_pred CcchhhhhHhhcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccCCceEEeecCCcccccccccCc
Confidence 24556677776666666655 999999999754420
Q ss_pred ------C------ccccch-----HHHHHHHh---cCCCceeeccCCCCCChhhhhhhccceeeecCCCCCChhHHHHHH
Q 016207 219 ------E------PKKRYP-----PMRDALNE---TGCSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWASMTSIA 278 (393)
Q Consensus 219 ------~------~~~~y~-----~m~~AL~~---agr~i~~slc~~g~~~P~~w~~~~~n~~Ris~Di~~~W~~~~~~~ 278 (393)
. ....|. ...+++++ ..|+++++-+.|.. ...++..| ++|+..+|+.+...+
T Consensus 192 ~~~~~~~~~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~sRs~~~G------~qr~~~~w--~GD~~s~w~~L~~~i 263 (441)
T PF01055_consen 192 EDAVHHDGYSGYEMHNLYGLLYAKATYEALREIDPNKRPFIFSRSGWAG------SQRYGGHW--SGDNSSSWDGLRSSI 263 (441)
T ss_dssp TTEECTTECEHHHHGGGHHHHHHHHHHHHHHHHSTTSC-EEEESSEETT------GGGTCEEE--ECSSBSSHHHHHHHH
T ss_pred ccceecCCCCchheeccccccchhhhhhhhhhccCCCCcceeecccCCC------CCccceee--cccccccHHHHHHHH
Confidence 0 022332 33445544 45777776554321 12455565 789999999887766
Q ss_pred Hh
Q 016207 279 DI 280 (393)
Q Consensus 279 ~~ 280 (393)
..
T Consensus 264 ~~ 265 (441)
T PF01055_consen 264 PA 265 (441)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 28
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=98.95 E-value=4.5e-08 Score=98.28 Aligned_cols=159 Identities=17% Similarity=0.207 Sum_probs=112.6
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCH--HHHHHHHHHcCCeEEEEeeCCccc
Q 016207 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGI--KALADYVHGKGLKLGIYSDAGVFT 182 (393)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl--~~l~d~vh~~Gmk~Glw~~pg~~~ 182 (393)
-+++++++.++.+.+.++. ++.|.||.+|+. ..++++.|+++||+ . +.|++.||++|+|+-+|+.|....
T Consensus 21 ~~~~~v~~~~~~~r~~~iP---~d~i~lD~~~~~----~~~~f~~d~~~FPd-p~~~~mi~~L~~~G~k~~~~i~P~v~~ 92 (339)
T cd06602 21 KNVDEVKEVVENMRAAGIP---LDVQWNDIDYMD----RRRDFTLDPVRFPG-LKMPEFVDELHANGQHYVPILDPAISA 92 (339)
T ss_pred CCHHHHHHHHHHHHHhCCC---cceEEECccccc----CccceecccccCCC-ccHHHHHHHHHHCCCEEEEEEeCcccc
Confidence 4799999999999886654 889999999986 35789999999999 7 999999999999999999885311
Q ss_pred -------------------c---------------------CCCCcccccHHhHHHH-HHHcCCcEEEeecCCCCCC-Cc
Q 016207 183 -------------------C---------------------QVRPGSLFHEKDDAPL-FASWGVDYLKYDNCFNLGI-EP 220 (393)
Q Consensus 183 -------------------c---------------------~~~pgs~~~~~~~~~~-~~~wGvdylK~D~~~~~~~-~~ 220 (393)
| -++|.+.++.....+. +.+.|||++|.|++..... ..
T Consensus 93 ~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~Ep~~~~~~ 172 (339)
T cd06602 93 NEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVPFDGLWIDMNEPSNFYDV 172 (339)
T ss_pred CcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCCCcEEEecCCCCchHhhh
Confidence 0 1345566666555555 5568999999999865422 11
Q ss_pred cccch-----HHHHHHHh-c-CCCceeeccCCCCCChhhhhhhccceeeecCCCCCChhHHHHHHH
Q 016207 221 KKRYP-----PMRDALNE-T-GCSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWASMTSIAD 279 (393)
Q Consensus 221 ~~~y~-----~m~~AL~~-a-gr~i~~slc~~g~~~P~~w~~~~~n~~Ris~Di~~~W~~~~~~~~ 279 (393)
...|. ...+++++ . .|+++++-+.+... ..++-.| ++|+..+|+.+..++.
T Consensus 173 hN~y~~~~~~~~~~~~~~~~~~r~~~~sRs~~~G~------qry~~~w--~GD~~s~W~~L~~~i~ 230 (339)
T cd06602 173 HNLYGLSEAIATYKALQSIPGKRPFVISRSTFPGS------GRYAGHW--LGDNASTWEDLRYSII 230 (339)
T ss_pred cchhhHHHHHHHHHHHHhcCCCCCEEEEecCcccc------cccceeE--CCCccCCHHHHHHHHH
Confidence 22332 23344443 2 36777765543221 1344455 7899999998876664
No 29
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=98.94 E-value=2.7e-08 Score=99.92 Aligned_cols=171 Identities=18% Similarity=0.221 Sum_probs=111.3
Q ss_pred chhhhCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCC------------CC-----CCCccccC-CCCCCCH
Q 016207 97 SWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLR------------DL-----KGQLVPDT-ITFPSGI 158 (393)
Q Consensus 97 SW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~r------------d~-----~G~~~~d~-~kFP~Gl 158 (393)
-|..-+.-.|++++++.|+.+.+.++. ++.|.||+ |+.... |. .++...++ ++||+ +
T Consensus 13 ~~~sr~~Y~~~~ev~~v~~~~~~~~iP---~d~i~lD~-W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPd-p 87 (340)
T cd06597 13 LWMSANEWDTQAEVMRQMDAHEEHGIP---VTVVVIEQ-WSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPN-P 87 (340)
T ss_pred hhhhccCCCCHHHHHHHHHHHHHcCCC---eeEEEEec-ccCcceeeeeccchhcccccCCcceecccccCccccCCC-H
Confidence 343344457999999999999886654 89999995 886210 11 13444443 68998 9
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccc---------------------------------------c----CCCCcccccHHh
Q 016207 159 KALADYVHGKGLKLGIYSDAGVFT---------------------------------------C----QVRPGSLFHEKD 195 (393)
Q Consensus 159 ~~l~d~vh~~Gmk~Glw~~pg~~~---------------------------------------c----~~~pgs~~~~~~ 195 (393)
+.|+++||++|+|+-+|+.|.... | .++|.+.++...
T Consensus 88 ~~mi~~Lh~~G~kv~l~v~P~i~~~~~~~~~~~~~~~~~~~~g~~vk~~~G~~~~~~~~W~g~~~~~Dftnp~a~~Ww~~ 167 (340)
T cd06597 88 KGMIDELHEQGVKVLLWQIPIIKLRPHPHGQADNDEDYAVAQNYLVQRGVGKPYRIPGQWFPDSLMLDFTNPEAAQWWME 167 (340)
T ss_pred HHHHHHHHHCCCEEEEEecCccccccccccccchhHHHHHHCCEEEEcCCCCccccccccCCCceeecCCCHHHHHHHHH
Confidence 999999999999999999884210 0 134556666666
Q ss_pred HHHHHH-HcCCcEEEeecCCCCC---------CCc---cccch-----HHHHHHHhcC-CCceeeccCCCCCChhhhhhh
Q 016207 196 DAPLFA-SWGVDYLKYDNCFNLG---------IEP---KKRYP-----PMRDALNETG-CSIFYSLCEWGVDDPALWAGK 256 (393)
Q Consensus 196 ~~~~~~-~wGvdylK~D~~~~~~---------~~~---~~~y~-----~m~~AL~~ag-r~i~~slc~~g~~~P~~w~~~ 256 (393)
..+.+. +.|||.+|.|++...- ... ...|. .+.+++++.+ |+++++-+.+... ..
T Consensus 168 ~~~~~~~~~Gidg~w~D~~E~~~~~~~~~~~g~~~~~~hN~y~~~~~~~~~e~~~~~~~r~filtRs~~~Gs------qr 241 (340)
T cd06597 168 KRRYLVDELGIDGFKTDGGEHVWGRDLHFRDGRRGDEMRNTYPNHYVRAYNDFLRRAKKDGVTFSRAGYTGA------QA 241 (340)
T ss_pred HHHHHHHhcCCcEEEecCCCccCCCCceecCCCcHHHhhcccHHHHHHHHHHHHHhccCCcEEEEecccCcc------CC
Confidence 666555 7999999999875321 000 12232 3344444444 6777765543211 24
Q ss_pred ccceeeecCCCCCChhHHHHHHHh
Q 016207 257 VGNSWRTTGDINDTWASMTSIADI 280 (393)
Q Consensus 257 ~~n~~Ris~Di~~~W~~~~~~~~~ 280 (393)
++-.| +.|+..+|+.+...+..
T Consensus 242 y~~~W--sGD~~s~W~~L~~~i~~ 263 (340)
T cd06597 242 HGIFW--AGDENSTFGAFRWSVFA 263 (340)
T ss_pred Cccee--cCCCCCCHHHHHHHHHH
Confidence 44445 78999999988776653
No 30
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=98.92 E-value=1.2e-07 Score=94.28 Aligned_cols=161 Identities=18% Similarity=0.310 Sum_probs=108.9
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCC-----CccccCCCCCCCHHHHHHHHHHcCCeEEEEeeCCc
Q 016207 106 SETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKG-----QLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGV 180 (393)
Q Consensus 106 ~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G-----~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Glw~~pg~ 180 (393)
+++++++.++.+.+.+++ ++.|.|| .|+...-+..| +++.|+++||+ .+.|+++||++|+|+-+|+.|..
T Consensus 21 s~~~v~~~~~~~~~~~iP---~d~i~ld-dw~~~~~~~~g~~~~~~f~~d~~~FPd-p~~mi~~Lh~~G~~~~~~i~P~v 95 (317)
T cd06594 21 GTDKVLEALEKARAAGVK---VAGLWLQ-DWTGRRETSFGDRLWWNWEWDPERYPG-LDELIEELKARGIRVLTYINPYL 95 (317)
T ss_pred CHHHHHHHHHHHHHcCCC---eeEEEEc-cccCcccccccceeeeeeEEChhhCCC-HHHHHHHHHHCCCEEEEEecCce
Confidence 999999999999886554 8899999 58642112223 47899999999 99999999999999999999863
Q ss_pred cc--------------------------------c----CCCCcccccHHhHHHHH-HHcCCcEEEeecCCCCCCC----
Q 016207 181 FT--------------------------------C----QVRPGSLFHEKDDAPLF-ASWGVDYLKYDNCFNLGIE---- 219 (393)
Q Consensus 181 ~~--------------------------------c----~~~pgs~~~~~~~~~~~-~~wGvdylK~D~~~~~~~~---- 219 (393)
.. | .++|.+.++....++.+ .+.|||.+|.|++.....+
T Consensus 96 ~~~~~~~y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E~~p~d~~~~ 175 (317)
T cd06594 96 ADDGPLYYEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVIKEMLLDLGLSGWMADFGEYLPFDAVLH 175 (317)
T ss_pred ecCCchhHHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHHHHHhhhcCCcEEEecCCCCCCCcceec
Confidence 10 0 24667777775555544 7899999999997542111
Q ss_pred -c------cccch-HH----HHHHHhc---CCCceeeccCCCCCChhhhhhhccce-eeecCCCCCChh---HHHHHHH
Q 016207 220 -P------KKRYP-PM----RDALNET---GCSIFYSLCEWGVDDPALWAGKVGNS-WRTTGDINDTWA---SMTSIAD 279 (393)
Q Consensus 220 -~------~~~y~-~m----~~AL~~a---gr~i~~slc~~g~~~P~~w~~~~~n~-~Ris~Di~~~W~---~~~~~~~ 279 (393)
. ...|. .+ .+++++. +|+++++-+.+.. ..+++.+ | +.|+..+|+ .+...+.
T Consensus 176 ~g~~~~~~hN~y~~~~~~~~~~~~~~~~~~~r~fvltRs~~~G------sqry~~~~W--sGD~~s~W~~~~~L~~~i~ 246 (317)
T cd06594 176 SGEDAATMHNRYPELWAKLNREAVEEAGKTGDILFFMRSGFTG------SQKYSTLFW--AGDQMVSWDAHDGLKSVVP 246 (317)
T ss_pred CCCCHHHHhhHHHHHHHHHHHHHHHHhccCCCeEEEEcccccc------ccccccccc--CCCCCCCCcCcccHHHHHH
Confidence 1 12232 12 3344433 5677777554321 1245543 5 689999997 3655543
No 31
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=98.90 E-value=7.9e-08 Score=96.43 Aligned_cols=161 Identities=17% Similarity=0.135 Sum_probs=113.4
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccc-
Q 016207 104 NISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFT- 182 (393)
Q Consensus 104 ~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Glw~~pg~~~- 182 (393)
--|++++++.|+.+.+.+++ ++.+.||..|.. ..++++.|+++||+ ++.|++++|++|+|+-+|+.|....
T Consensus 20 y~~~~ev~~~~~~~~~~~iP---~d~i~lD~~~~~----~~~~f~~d~~~FPd-p~~mi~~L~~~G~k~~~~~~P~v~~~ 91 (339)
T cd06603 20 YKDQEDVKEVDAGFDEHDIP---YDVIWLDIEHTD----GKRYFTWDKKKFPD-PEKMQEKLASKGRKLVTIVDPHIKRD 91 (339)
T ss_pred CCCHHHHHHHHHHHHHcCCC---ceEEEEChHHhC----CCCceEeCcccCCC-HHHHHHHHHHCCCEEEEEecCceecC
Confidence 35899999999999886554 899999999976 34678999999998 9999999999999999999885210
Q ss_pred --------------------------------c----CCCCcccccHHhHHHHHH---HcCCcEEEeecCCCCCC-----
Q 016207 183 --------------------------------C----QVRPGSLFHEKDDAPLFA---SWGVDYLKYDNCFNLGI----- 218 (393)
Q Consensus 183 --------------------------------c----~~~pgs~~~~~~~~~~~~---~wGvdylK~D~~~~~~~----- 218 (393)
| .++|++.++.....+.+. +.|+++++.|++.....
T Consensus 92 ~~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~g~~g~w~D~~Ep~~f~~~~~ 171 (339)
T cd06603 92 DGYYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKYKGSTENLYIWNDMNEPSVFNGPEL 171 (339)
T ss_pred CCCHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhhcccCCCceEEeccCCccccCCCCC
Confidence 1 256777777766665544 47999999999753211
Q ss_pred ------------Cc---cccch-----HHHHHHHhc----CCCceeeccCCCCCChhhhhhhccceeeecCCCCCChhHH
Q 016207 219 ------------EP---KKRYP-----PMRDALNET----GCSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWASM 274 (393)
Q Consensus 219 ------------~~---~~~y~-----~m~~AL~~a----gr~i~~slc~~g~~~P~~w~~~~~n~~Ris~Di~~~W~~~ 274 (393)
.. ...|. ...+++.+. .|+++++-+.+... ..++-.| +.|+..+|+.+
T Consensus 172 ~~p~d~~~~~~~~~~~~hN~y~~~~~~a~~e~~~~~~~~~~r~~~~sRs~~~G~------qry~~~W--~GD~~s~W~~L 243 (339)
T cd06603 172 TMPKDAIHYGGIEHREVHNIYGLYMHMATFDGLLKRSEGNKRPFVLTRSFFAGS------QRYAAIW--TGDNTATWEHL 243 (339)
T ss_pred cCCCcceecCCCcHHHHhhHhHHHHHHHHHHHHHHhhccCCceEEEEecccccc------cceeeee--CCCccCCHHHH
Confidence 00 11232 233444332 47777765544221 2455555 78999999988
Q ss_pred HHHHHh
Q 016207 275 TSIADI 280 (393)
Q Consensus 275 ~~~~~~ 280 (393)
...+..
T Consensus 244 ~~~i~~ 249 (339)
T cd06603 244 KISIPM 249 (339)
T ss_pred HHHHHH
Confidence 776653
No 32
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=98.82 E-value=5.6e-08 Score=106.79 Aligned_cols=167 Identities=20% Similarity=0.260 Sum_probs=123.6
Q ss_pred chhhhCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCC-cCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcCCeEEEE
Q 016207 97 SWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDC-WSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIY 175 (393)
Q Consensus 97 SW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDG-W~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Glw 175 (393)
.|......-+|+.+.+.++.+.+ .+..++.|.+|.. |-. ..+.++.|+.+||+ .+.|++++|++|+|+-+|
T Consensus 269 ~~~~~~~~~~e~~v~~~i~~~~~---~~IP~d~~~lD~~~~~~----~~~~F~wd~~~FP~-pk~mi~~l~~~Gikl~~~ 340 (772)
T COG1501 269 LWTSRYTYYDEDEVLEFIDEMRE---RDIPLDVFVLDIDFWMD----NWGDFTWDPDRFPD-PKQMIAELHEKGIKLIVI 340 (772)
T ss_pred CceeccccccHHHHHHHHhhccc---ccCcceEEEEeehhhhc----cccceEECcccCCC-HHHHHHHHHhcCceEEEE
Confidence 33334446779999999999976 4556899999986 654 45679999999999 999999999999999999
Q ss_pred eeCCccc--------------------------c---------CCCCcccccHH-hHHHHHHHcCCcEEEeecCCCCCCC
Q 016207 176 SDAGVFT--------------------------C---------QVRPGSLFHEK-DDAPLFASWGVDYLKYDNCFNLGIE 219 (393)
Q Consensus 176 ~~pg~~~--------------------------c---------~~~pgs~~~~~-~~~~~~~~wGvdylK~D~~~~~~~~ 219 (393)
..|.... | .++|.++++.. ...+.+.+.|||.++.|++-..-.+
T Consensus 341 i~P~i~~d~~~~~e~~~~Gy~~k~~~g~~~~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~Gv~g~W~D~nEp~~~~ 420 (772)
T COG1501 341 INPYIKQDSPLFKEAIEKGYFVKDPDGEIYQADFWPGNSAFPDFTNPDAREWWASDKKKNLLDLGVDGFWNDMNEPEPFD 420 (772)
T ss_pred eccccccCCchHHHHHHCCeEEECCCCCEeeecccCCcccccCCCCHHHHHHHHHHHHhHHHhcCccEEEccCCCCcccc
Confidence 9995210 0 36788899997 4557799999999999998654221
Q ss_pred ------------ccccch-----HHHHHHHhc---CCCceeeccCCCCCChhhhhhhccceeeecCCCCCChhHHHHHHH
Q 016207 220 ------------PKKRYP-----PMRDALNET---GCSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWASMTSIAD 279 (393)
Q Consensus 220 ------------~~~~y~-----~m~~AL~~a---gr~i~~slc~~g~~~P~~w~~~~~n~~Ris~Di~~~W~~~~~~~~ 279 (393)
....|. ...+++++. .|+++|+-|.+... ..++-.| ++|+...|+++...+.
T Consensus 421 ~~~~~~g~~~~~~~N~yp~~~~~a~~~~~~~~~~~~r~~~lsRsg~aG~------Q~~~~~W--sGD~~s~wd~l~~si~ 492 (772)
T COG1501 421 GDGFGNGIDHEEMHNLYPLLYAKAVYEALKELGGNERPFILSRSGYAGS------QRYAAHW--SGDNRSSWDSLRESIP 492 (772)
T ss_pred ccccccccCHHHHhcchhHHHHHHHHHHHHhhcCCCceEEEEecccccc------eecccee--CCccccchHHHHhhHH
Confidence 122232 445666655 58888887654321 1445567 8899999999877664
No 33
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=98.65 E-value=1e-06 Score=98.44 Aligned_cols=159 Identities=19% Similarity=0.167 Sum_probs=113.6
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccc--
Q 016207 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFT-- 182 (393)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Glw~~pg~~~-- 182 (393)
-+++++++.++.+.+.++ .++.|.+|..|.. ..+.++.|+++||+ .+.|++++|++|+|+-.+++|+...
T Consensus 198 ~sq~eV~eva~~fre~~I---P~DvIwlDidYm~----g~~~FTwD~~rFPd-P~~mv~~Lh~~G~kvv~iidPgI~~d~ 269 (978)
T PLN02763 198 ESAKRVAEIARTFREKKI---PCDVVWMDIDYMD----GFRCFTFDKERFPD-PKGLADDLHSIGFKAIWMLDPGIKAEE 269 (978)
T ss_pred CCHHHHHHHHHHHHHcCC---CceEEEEehhhhc----CCCceeECcccCCC-HHHHHHHHHHCCCEEEEEEcCCCccCC
Confidence 478999999999988555 4899999999975 24468999999999 9999999999999997777885310
Q ss_pred -------------------------------c----CCCCcccccHHhHHHHHHHcCCcEEEeecCCCCCCC--------
Q 016207 183 -------------------------------C----QVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIE-------- 219 (393)
Q Consensus 183 -------------------------------c----~~~pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~-------- 219 (393)
| -++|.+.+|.....+.|.+.|||+++.|++-.....
T Consensus 270 gY~~y~eg~~~~~fvk~~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~~~~k~l~d~GVDG~W~DmnEPa~f~~~~~t~P~ 349 (978)
T PLN02763 270 GYFVYDSGCENDVWIQTADGKPFVGEVWPGPCVFPDFTNKKTRSWWANLVKDFVSNGVDGIWNDMNEPAVFKTVTKTMPE 349 (978)
T ss_pred CCHHHHhHhhcCeeEECCCCCeeEeeecCCCccccCCCCHHHHHHHHHHHHHHhcCCCcEEEccCCCCccccCCcCCCCc
Confidence 0 235667778877778888999999999997542110
Q ss_pred -----c-------------cccch-----HHHHHHHh---cCCCceeeccCCCCCChhhhhhhccceeeecCCCCCChhH
Q 016207 220 -----P-------------KKRYP-----PMRDALNE---TGCSIFYSLCEWGVDDPALWAGKVGNSWRTTGDINDTWAS 273 (393)
Q Consensus 220 -----~-------------~~~y~-----~m~~AL~~---agr~i~~slc~~g~~~P~~w~~~~~n~~Ris~Di~~~W~~ 273 (393)
. ...|. ...+++++ ..||++++-+.+... ..|+-.| ++|+..+|+.
T Consensus 350 ~~~h~g~~~~gG~~~h~~~HNlYgll~akatyEgl~~~~~~kRPFilTRSgfaGs------QRYaa~W--tGDn~SsWe~ 421 (978)
T PLN02763 350 TNIHRGDEELGGVQNHSHYHNVYGMLMARSTYEGMLLANKNKRPFVLTRAGFIGS------QRYAATW--TGDNLSNWEH 421 (978)
T ss_pred cccccCCcccCCccCHHHHhhhhHHHHHHHHHHHHHHhCCCCCcEEEEccccCcC------CCCceEE--CCCccCCHHH
Confidence 0 11121 22233433 248888876554221 2455566 8899999998
Q ss_pred HHHHHH
Q 016207 274 MTSIAD 279 (393)
Q Consensus 274 ~~~~~~ 279 (393)
+...+.
T Consensus 422 L~~sI~ 427 (978)
T PLN02763 422 LHMSIP 427 (978)
T ss_pred HHHHHH
Confidence 876654
No 34
>PRK10426 alpha-glucosidase; Provisional
Probab=98.54 E-value=1.7e-06 Score=93.67 Aligned_cols=160 Identities=17% Similarity=0.251 Sum_probs=109.6
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCC-----CCCccccCCCCCCCHHHHHHHHHHcCCeEEEEeeCCc
Q 016207 106 SETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDL-----KGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGV 180 (393)
Q Consensus 106 ~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~-----~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Glw~~pg~ 180 (393)
+++++++.++.+.+.+++ ++.|.|| .|+...... .++|+.|+++||+ .+.+++++|++|+|+-+|+.|..
T Consensus 219 ~~~~v~~v~~~~r~~~IP---~d~i~ld-dw~~~~~~~~g~~~~~~~~~d~~~FPd-p~~mi~~L~~~G~k~v~~i~P~v 293 (635)
T PRK10426 219 GTEVVQKKLDTMRNAGVK---VNGIWAQ-DWSGIRMTSFGKRLMWNWKWDSERYPQ-LDSRIKQLNEEGIQFLGYINPYL 293 (635)
T ss_pred CHHHHHHHHHHHHHcCCC---eeEEEEe-cccccccccccccccccceEChhhCCC-HHHHHHHHHHCCCEEEEEEcCcc
Confidence 578999999999886554 7889898 597632111 2467899999999 99999999999999999999952
Q ss_pred c-------------------------------cc----CCCCcccccHHhHH-HHHHHcCCcEEEeecCCCCC-------
Q 016207 181 F-------------------------------TC----QVRPGSLFHEKDDA-PLFASWGVDYLKYDNCFNLG------- 217 (393)
Q Consensus 181 ~-------------------------------~c----~~~pgs~~~~~~~~-~~~~~wGvdylK~D~~~~~~------- 217 (393)
. .| .++|.+.++....+ +.+.+.|||.+|.|++-...
T Consensus 294 ~~~~~~y~e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~Gvdg~w~D~~E~~p~d~~~~~ 373 (635)
T PRK10426 294 ASDGDLCEEAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLGCSGWMADFGEYLPTDAYLHN 373 (635)
T ss_pred CCCCHHHHHHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcCCCEEeeeCCCCCCCcceeeC
Confidence 1 01 35777888886655 56889999999999975321
Q ss_pred -CC---ccccch-----HHHHHHHhc---CCCceeeccCCCCCChhhhhhhccc-eeeecCCCCCChh---HHHHHH
Q 016207 218 -IE---PKKRYP-----PMRDALNET---GCSIFYSLCEWGVDDPALWAGKVGN-SWRTTGDINDTWA---SMTSIA 278 (393)
Q Consensus 218 -~~---~~~~y~-----~m~~AL~~a---gr~i~~slc~~g~~~P~~w~~~~~n-~~Ris~Di~~~W~---~~~~~~ 278 (393)
.. ....|. ...+++++. +|+++++-+.+.. ...|+. .| ++|...+|+ .+...+
T Consensus 374 g~~~~~~hN~Y~~l~~~~~~e~~~~~~~~~r~f~ltRsg~aG------sQry~~~~W--sGD~~ssW~~~d~L~~~I 442 (635)
T PRK10426 374 GVSAEIMHNAWPALWAKCNYEALEETGKLGEILFFMRAGYTG------SQKYSTLFW--AGDQNVDWSLDDGLASVV 442 (635)
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHHhcCCCCcEEEEccccCC------cCCcccccc--CCCCCCcCcChhHHHHHH
Confidence 11 112232 233455443 4787776554321 124554 46 789999995 455444
No 35
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=97.66 E-value=0.00017 Score=78.75 Aligned_cols=116 Identities=17% Similarity=0.162 Sum_probs=90.9
Q ss_pred ceEEechhhhC--CCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcC
Q 016207 92 QMGWNSWNFFA--CNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKG 169 (393)
Q Consensus 92 p~GwnSW~~~~--~~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~G 169 (393)
|--|+-|..+. .-.+.+.+++.++.+.+ +..+++.+.+|+-|.. .+++.++|+.+||. ++.+++.||+.|
T Consensus 293 ~pYWslGf~~~RwgY~nls~~~dvv~~~~~---agiPld~~~~DiDyMd----~ykDFTvd~~~fp~-~~~fv~~Lh~~G 364 (805)
T KOG1065|consen 293 PPYWSLGFQLCRWGYKNLSVVRDVVENYRA---AGIPLDVIVIDIDYMD----GYKDFTVDKVWFPD-LKDFVDDLHARG 364 (805)
T ss_pred CchhhccceecccccccHHHHHHHHHHHHH---cCCCcceeeeehhhhh----cccceeeccccCcc-hHHHHHHHHhCC
Confidence 33588887655 46899999999999977 3445789999999987 56679999999999 999999999999
Q ss_pred CeEEEEeeCCccc------------c--------------------------CCCCcccccHHhHHHHHH-HcCCcEEEe
Q 016207 170 LKLGIYSDAGVFT------------C--------------------------QVRPGSLFHEKDDAPLFA-SWGVDYLKY 210 (393)
Q Consensus 170 mk~Glw~~pg~~~------------c--------------------------~~~pgs~~~~~~~~~~~~-~wGvdylK~ 210 (393)
+|.-++++|+..+ | -++|.+..+....++.|. +.+||.+++
T Consensus 365 ~kyvliidP~is~~~~y~~y~~g~~~~v~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww~~~~~~fh~~vp~dg~wi 444 (805)
T KOG1065|consen 365 FKYVLIIDPFISTNSSYGPYDRGVAKDVLIKNREGSPKMLGEVWPGSTAFPDFTNPAVVEWWLDELKRFHDEVPFDGFWI 444 (805)
T ss_pred CeEEEEeCCccccCccchhhhhhhhhceeeecccCchhhhcccCCCcccccccCCchHHHHHHHHHHhhcccCCccceEE
Confidence 9999999996421 0 123445556655666666 789999999
Q ss_pred ecCCC
Q 016207 211 DNCFN 215 (393)
Q Consensus 211 D~~~~ 215 (393)
|++..
T Consensus 445 DmnE~ 449 (805)
T KOG1065|consen 445 DMNEP 449 (805)
T ss_pred ECCCc
Confidence 99643
No 36
>cd06596 GH31_CPE1046 CPE1046 is an uncharacterized Clostridium perfringens protein with a glycosyl hydrolase family 31 (GH31) domain. The domain architecture of CPE1046 and its orthologs includes a C-terminal fibronectin type 3 (FN3) domain and a coagulation factor 5/8 type C domain in addition to the GH31 domain. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=96.64 E-value=0.0089 Score=57.98 Aligned_cols=137 Identities=17% Similarity=0.296 Sum_probs=90.8
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccccC
Q 016207 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQ 184 (393)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Glw~~pg~~~c~ 184 (393)
-.+..+++.||.-++.. +...+|+-+||.... . ..|+.++++++++|++.|||++-+
T Consensus 42 ~~~~~a~~~~~~y~~~~---~plgw~lpndgyg~~------y---------~~l~~~~~~~~~~g~~~glwt~~~----- 98 (261)
T cd06596 42 STTDDARKVADKYKEND---MPLGWMLPNDGYGCG------Y---------ENLKEVVDYLHANGVETGLWTQSG----- 98 (261)
T ss_pred cchhhHHHHHHHHHhcC---CCceeeccCCCCcch------H---------HHHHHHHHHHHHcCCccccccccc-----
Confidence 34456778888887744 446778888877652 1 249999999999999999997643
Q ss_pred CCCcccccHHhHHHHHHHcCCcEEEeecCCCCCC-C-ccccchHHHHHHHh--cCCCceeeccCCCCCChhhhhhhccce
Q 016207 185 VRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGI-E-PKKRYPPMRDALNE--TGCSIFYSLCEWGVDDPALWAGKVGNS 260 (393)
Q Consensus 185 ~~pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~-~-~~~~y~~m~~AL~~--agr~i~~slc~~g~~~P~~w~~~~~n~ 260 (393)
+....+....-|+..+|+|--..+.- . ....-+...+++++ ..||++++.|.|... ..++-.
T Consensus 99 --------l~~~~~ev~~~g~~~~k~Dv~w~g~gy~~~l~~~ka~yeg~~~~~~~RpfiltRsg~aGs------QRy~~~ 164 (261)
T cd06596 99 --------LRDIAKEVGAAGVRARKTDVAWVGAGYSFALNGVKAAADGIESNSNARPFIVTVDGWAGT------QRYAGI 164 (261)
T ss_pred --------hhhhhhhhccCCceEEeccchhhccchhHHHHHHHHHHHHHHhCCCCCCEEEEecCcccc------CCCCCc
Confidence 23445556788999999998754321 1 11111223334432 358999998766431 245555
Q ss_pred eeecCCCCCChhHHHHHHHh
Q 016207 261 WRTTGDINDTWASMTSIADI 280 (393)
Q Consensus 261 ~Ris~Di~~~W~~~~~~~~~ 280 (393)
| +.|+..+|+.+...+..
T Consensus 165 W--sGD~~stWe~Lr~sI~~ 182 (261)
T cd06596 165 W--TGDQSGSWEYIRFHIPT 182 (261)
T ss_pred c--CCCCcCcHHHHHHHHHH
Confidence 6 88999999998766643
No 37
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=94.31 E-value=0.28 Score=53.40 Aligned_cols=100 Identities=20% Similarity=0.313 Sum_probs=65.5
Q ss_pred CCHHHHHHHH-HHHHHcCCcccCceEEEe--------CCCcCCCCCCCCCCccccCCCCC--CCHHHHHHHHHHcCCeEE
Q 016207 105 ISETIIKETA-DALVSTGLAELGYDHVNI--------DDCWSSPLRDLKGQLVPDTITFP--SGIKALADYVHGKGLKLG 173 (393)
Q Consensus 105 i~e~~i~~~a-d~~~~~gl~~~G~~~~~I--------DDGW~~~~rd~~G~~~~d~~kFP--~Gl~~l~d~vh~~Gmk~G 173 (393)
-+...|.+.. +.+ +++|++.|.| +..|. -+..+...++ .+|. ..+|.|++.+|++||++-
T Consensus 153 g~~~~i~~~l~dyl-----~~LGvt~i~L~Pi~e~~~~~~wG---Y~~~~y~~~~-~~~Gt~~dlk~lV~~~H~~Gi~Vi 223 (613)
T TIGR01515 153 LSYRELADQLIPYV-----KELGFTHIELLPVAEHPFDGSWG---YQVTGYYAPT-SRFGTPDDFMYFVDACHQAGIGVI 223 (613)
T ss_pred CCHHHHHHHHHHHH-----HHcCCCEEEECCcccCCCCCCCC---CCcccCcccc-cccCCHHHHHHHHHHHHHCCCEEE
Confidence 4566666664 777 7889999887 22232 1222334455 3553 469999999999999998
Q ss_pred EEeeCCc------------------ccc---------------CCCCcccccHHhHHHHH-HHcCCcEEEeecC
Q 016207 174 IYSDAGV------------------FTC---------------QVRPGSLFHEKDDAPLF-ASWGVDYLKYDNC 213 (393)
Q Consensus 174 lw~~pg~------------------~~c---------------~~~pgs~~~~~~~~~~~-~~wGvdylK~D~~ 213 (393)
|-+-+.- ..+ ..+|.++.|+...++.+ .++|||.+++|..
T Consensus 224 lD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v 297 (613)
T TIGR01515 224 LDWVPGHFPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAV 297 (613)
T ss_pred EEecccCcCCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCH
Confidence 8764310 000 13456667776666654 5899999999974
No 38
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=92.42 E-value=0.8 Score=45.93 Aligned_cols=101 Identities=18% Similarity=0.117 Sum_probs=71.5
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCcccc-----------CCCCCCCHHHHHHHHHHcCCeEEE
Q 016207 106 SETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPD-----------TITFPSGIKALADYVHGKGLKLGI 174 (393)
Q Consensus 106 ~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d-----------~~kFP~Gl~~l~d~vh~~Gmk~Gl 174 (393)
+++.+.+.++.+ ++-|++.++|| -.|++|.+..+ ...+...++.|++.+|++|+-+--
T Consensus 11 ~~~~~~~~~~~i-----~~t~lNavVID------vKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IA 79 (316)
T PF13200_consen 11 SPERLDKLLDLI-----KRTELNAVVID------VKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIA 79 (316)
T ss_pred CHHHHHHHHHHH-----HhcCCceEEEE------EecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEE
Confidence 457788888888 44567788987 34555555432 122324599999999999988766
Q ss_pred EeeCCc----------------------------cccCCCCcccccHHhHHHHHHHcCCcEEEeecCCCCC
Q 016207 175 YSDAGV----------------------------FTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLG 217 (393)
Q Consensus 175 w~~pg~----------------------------~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~ 217 (393)
++..+. ..|+..+.+.+|.-..++..++.|||-|-+|+...+.
T Consensus 80 RIv~FkD~~la~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~GFdEIqfDYIRFP~ 150 (316)
T PF13200_consen 80 RIVVFKDPVLAEAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKLGFDEIQFDYIRFPD 150 (316)
T ss_pred EEEEecChHHhhhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHcCCCEEEeeeeecCC
Confidence 653221 1235566788898888899999999999999986554
No 39
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=90.22 E-value=4.4 Score=40.96 Aligned_cols=84 Identities=18% Similarity=0.157 Sum_probs=50.5
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCccccCCCC--------c-------ccccH-----HhHHHHHHHcCCcEEEeecCCCCC
Q 016207 158 IKALADYVHGKGLKLGIYSDAGVFTCQVRP--------G-------SLFHE-----KDDAPLFASWGVDYLKYDNCFNLG 217 (393)
Q Consensus 158 l~~l~d~vh~~Gmk~Glw~~pg~~~c~~~p--------g-------s~~~~-----~~~~~~~~~wGvdylK~D~~~~~~ 217 (393)
+++|++.+++.|||+|+|+.+.-..-+.++ + ...|+ .+.-+++..+.+|.|=+|......
T Consensus 140 v~El~~A~rk~Glk~G~Y~S~~dw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfDg~~~~~ 219 (346)
T PF01120_consen 140 VGELADACRKYGLKFGLYYSPWDWHHPDYPPDEEGDENGPADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFDGGWPDP 219 (346)
T ss_dssp HHHHHHHHHHTT-EEEEEEESSSCCCTTTTSSCHCHHCC--HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEESTTSCC
T ss_pred HHHHHHHHHHcCCeEEEEecchHhcCcccCCCccCCcccccccchhhHhHhhhhhHHHHHHHHhCCCcceEEecCCCCcc
Confidence 799999999999999999998631111110 0 11233 233355667788888888876532
Q ss_pred CCccccchHHHHHHHhcCCCceeec
Q 016207 218 IEPKKRYPPMRDALNETGCSIFYSL 242 (393)
Q Consensus 218 ~~~~~~y~~m~~AL~~agr~i~~sl 242 (393)
.. ...+..+.+.+++..+.+++..
T Consensus 220 ~~-~~~~~~~~~~i~~~qp~~ii~~ 243 (346)
T PF01120_consen 220 DE-DWDSAELYNWIRKLQPDVIINN 243 (346)
T ss_dssp CT-HHHHHHHHHHHHHHSTTSEEEC
T ss_pred cc-ccCHHHHHHHHHHhCCeEEEec
Confidence 11 1223456666666677777664
No 40
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=89.84 E-value=1.5 Score=43.84 Aligned_cols=103 Identities=18% Similarity=0.219 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCC--CC----CCCCccccCCCCC--CCHHHHHHHHHHcCCeEEEEee
Q 016207 106 SETIIKETADALVSTGLAELGYDHVNIDDCWSSPL--RD----LKGQLVPDTITFP--SGIKALADYVHGKGLKLGIYSD 177 (393)
Q Consensus 106 ~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~--rd----~~G~~~~d~~kFP--~Gl~~l~d~vh~~Gmk~Glw~~ 177 (393)
+++.+.+.++.+ +++|++.|.++=-+.+.. .. ..+.++-.+.+=| +=|+.+++..|++||++=-|+.
T Consensus 17 ~~~~~~~~l~~l-----~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~ 91 (311)
T PF02638_consen 17 SKEQIDEMLDDL-----KSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFR 91 (311)
T ss_pred CHHHHHHHHHHH-----HHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEE
Confidence 788899999988 556677777653332210 00 0011111111101 1289999999999999998984
Q ss_pred CCc-----------------------------------cccCCCCcccccHHhHH-HHHHHcCCcEEEeecC
Q 016207 178 AGV-----------------------------------FTCQVRPGSLFHEKDDA-PLFASWGVDYLKYDNC 213 (393)
Q Consensus 178 pg~-----------------------------------~~c~~~pgs~~~~~~~~-~~~~~wGvdylK~D~~ 213 (393)
.+. .-|+.+|++++|+...+ +.++.+.||.|-+|.+
T Consensus 92 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~YdvDGIhlDdy 163 (311)
T PF02638_consen 92 VGFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYDVDGIHLDDY 163 (311)
T ss_pred eecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCCCCeEEeccc
Confidence 321 01256788999996665 4567899999999954
No 41
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=89.70 E-value=5.7 Score=40.92 Aligned_cols=80 Identities=20% Similarity=0.157 Sum_probs=50.2
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCcc-------------ccCCCCcccccH----HhHHHHHHHcCCcEEEeecCCCCCCCc
Q 016207 158 IKALADYVHGKGLKLGIYSDAGVF-------------TCQVRPGSLFHE----KDDAPLFASWGVDYLKYDNCFNLGIEP 220 (393)
Q Consensus 158 l~~l~d~vh~~Gmk~Glw~~pg~~-------------~c~~~pgs~~~~----~~~~~~~~~wGvdylK~D~~~~~~~~~ 220 (393)
+++|++.+|+.|||||+|+.+--. .+...|...+|+ .+..+++..+|-|.|=+|+.......
T Consensus 130 v~el~~A~rk~Glk~G~Y~S~~DW~~p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~~~~~~~- 208 (384)
T smart00812 130 VGELADAVRKRGLKFGLYHSLFDWFNPLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGGWEAPDD- 208 (384)
T ss_pred HHHHHHHHHHcCCeEEEEcCHHHhCCCccccccccccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCccc-
Confidence 899999999999999999876210 112233344555 34556677899999999986532211
Q ss_pred cccchHHHHHHHhcCCCc
Q 016207 221 KKRYPPMRDALNETGCSI 238 (393)
Q Consensus 221 ~~~y~~m~~AL~~agr~i 238 (393)
.-....+.+.+....+.+
T Consensus 209 ~~~~~~l~~~~~~~qP~~ 226 (384)
T smart00812 209 YWRSKEFLAWLYNLSPVK 226 (384)
T ss_pred hhcHHHHHHHHHHhCCCC
Confidence 112344555555555554
No 42
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=86.28 E-value=2.4 Score=46.23 Aligned_cols=101 Identities=22% Similarity=0.244 Sum_probs=63.0
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEe--------CCCcCCCCCCCCCCccccCCCC--CCCHHHHHHHHHHcCCeEEEE
Q 016207 106 SETIIKETADALVSTGLAELGYDHVNI--------DDCWSSPLRDLKGQLVPDTITF--PSGIKALADYVHGKGLKLGIY 175 (393)
Q Consensus 106 ~e~~i~~~ad~~~~~gl~~~G~~~~~I--------DDGW~~~~rd~~G~~~~d~~kF--P~Gl~~l~d~vh~~Gmk~Glw 175 (393)
+.+...+.++.+ +++||..|.| |-+|-- +..|..-|. ++| |+++|.|+|.+|++|+.+=|=
T Consensus 163 ~~e~a~~llpYl-----~elG~T~IELMPv~e~p~~~sWGY---q~~g~yAp~-sryGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 163 YFELAIELLPYL-----KELGITHIELMPVAEHPGDRSWGY---QGTGYYAPT-SRYGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred HHHHHHHHhHHH-----HHhCCCEEEEcccccCCCCCCCCC---Ccceecccc-ccCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 345555666666 7888888775 556632 233333344 566 679999999999999877654
Q ss_pred eeCCc-----ccc----------------------------CCCCcccccHHhHH-HHHHHcCCcEEEeecCCC
Q 016207 176 SDAGV-----FTC----------------------------QVRPGSLFHEKDDA-PLFASWGVDYLKYDNCFN 215 (393)
Q Consensus 176 ~~pg~-----~~c----------------------------~~~pgs~~~~~~~~-~~~~~wGvdylK~D~~~~ 215 (393)
.-|+- ..| .+++++..|+-..+ --+.++.||.|.+|....
T Consensus 234 ~V~~HF~~d~~~L~~fdg~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal~Wl~~yHiDGlRvDAV~s 307 (628)
T COG0296 234 WVPNHFPPDGNYLARFDGTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANALYWLEEYHIDGLRVDAVAS 307 (628)
T ss_pred ecCCcCCCCcchhhhcCCccccccCCcccccCCCcccchhccCcHHHHHHHHHHHHHHHHHhCCcceeeehhhh
Confidence 33321 111 11344555553333 336799999999999643
No 43
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=84.84 E-value=7.7 Score=41.70 Aligned_cols=123 Identities=20% Similarity=0.236 Sum_probs=71.5
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEeC--------CCcCCCCCCCCCCccccCCCC--CCCHHHHHHHHHHcCCeEEEE
Q 016207 106 SETIIKETADALVSTGLAELGYDHVNID--------DCWSSPLRDLKGQLVPDTITF--PSGIKALADYVHGKGLKLGIY 175 (393)
Q Consensus 106 ~e~~i~~~ad~~~~~gl~~~G~~~~~ID--------DGW~~~~rd~~G~~~~d~~kF--P~Gl~~l~d~vh~~Gmk~Glw 175 (393)
+-..|.+.++.+ +++|++.|.|= ..|.- |......+++ +| ++.++.|++.+|++||++=|=
T Consensus 109 ~~~gi~~~l~yl-----~~LGv~~i~L~Pi~~~~~~~~~GY---~~~~~~~~~~-~~G~~~e~k~lV~~aH~~Gi~VilD 179 (542)
T TIGR02402 109 TFDAAIEKLPYL-----ADLGITAIELMPVAQFPGTRGWGY---DGVLPYAPHN-AYGGPDDLKALVDAAHGLGLGVILD 179 (542)
T ss_pred CHHHHHHhhHHH-----HHcCCCEEEeCccccCCCCCCCCC---CccCcccccc-ccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 556666777777 77888887652 22311 1111223332 23 235999999999999997653
Q ss_pred eeCC--------------c------ccc-----CCCC---cccccHHhHHHH-HHHcCCcEEEeecCCCCC-CCccccch
Q 016207 176 SDAG--------------V------FTC-----QVRP---GSLFHEKDDAPL-FASWGVDYLKYDNCFNLG-IEPKKRYP 225 (393)
Q Consensus 176 ~~pg--------------~------~~c-----~~~p---gs~~~~~~~~~~-~~~wGvdylK~D~~~~~~-~~~~~~y~ 225 (393)
+-+. + ..| ..+| .+++|+-..++. +.++|||.+.+|....-. ....+-..
T Consensus 180 ~V~NH~~~~~~~~~~~~~y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~~~~~l~ 259 (542)
T TIGR02402 180 VVYNHFGPEGNYLPRYAPYFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLREYHFDGLRLDAVHAIADTSAKHILE 259 (542)
T ss_pred EccCCCCCccccccccCccccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhCCcEEEEeCHHHhccccHHHHHH
Confidence 2110 0 012 1345 666777555555 458999999999753321 12223445
Q ss_pred HHHHHHHhcCCC
Q 016207 226 PMRDALNETGCS 237 (393)
Q Consensus 226 ~m~~AL~~agr~ 237 (393)
.+++++++..++
T Consensus 260 ~~~~~~~~~~p~ 271 (542)
T TIGR02402 260 ELAREVHELAAE 271 (542)
T ss_pred HHHHHHHHHCCC
Confidence 677777766544
No 44
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=84.69 E-value=4.9 Score=43.73 Aligned_cols=87 Identities=16% Similarity=0.179 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHcCCeEEEEeeC----------------Cc-------------ccc-----CCCCcccccHHhHHHHHH-
Q 016207 157 GIKALADYVHGKGLKLGIYSDA----------------GV-------------FTC-----QVRPGSLFHEKDDAPLFA- 201 (393)
Q Consensus 157 Gl~~l~d~vh~~Gmk~Glw~~p----------------g~-------------~~c-----~~~pgs~~~~~~~~~~~~- 201 (393)
.+|.|++.+|++||++=|=+-. .+ ..| ..+|.++.|+...++.+.
T Consensus 230 efk~lV~~~H~~Gi~VilDvV~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~ 309 (605)
T TIGR02104 230 ELKQMIQALHENGIRVIMDVVYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVK 309 (605)
T ss_pred HHHHHHHHHHHCCCEEEEEEEcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHH
Confidence 4999999999999997542211 00 012 125666777766666654
Q ss_pred HcCCcEEEeecCCCCCCCccccchHHHHHHHhcCCCceeeccCCC
Q 016207 202 SWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYSLCEWG 246 (393)
Q Consensus 202 ~wGvdylK~D~~~~~~~~~~~~y~~m~~AL~~agr~i~~slc~~g 246 (393)
+.|||.+.+|...... .+....+++++++..+.+++-.-.|.
T Consensus 310 e~~iDGfR~D~~~~~~---~~~~~~~~~~~~~~~p~~~ligE~w~ 351 (605)
T TIGR02104 310 EYNIDGFRFDLMGIHD---IETMNEIRKALNKIDPNILLYGEGWD 351 (605)
T ss_pred HcCCCEEEEechhcCC---HHHHHHHHHHHHhhCCCeEEEEccCC
Confidence 7999999999764322 23345677777776766555433343
No 45
>PRK14706 glycogen branching enzyme; Provisional
Probab=84.18 E-value=5.4 Score=43.80 Aligned_cols=88 Identities=25% Similarity=0.405 Sum_probs=54.1
Q ss_pred cccCceEEEe--------CCCcCCCCCCCCCCccccCCCC--CCCHHHHHHHHHHcCCeEEEEeeCC-------------
Q 016207 123 AELGYDHVNI--------DDCWSSPLRDLKGQLVPDTITF--PSGIKALADYVHGKGLKLGIYSDAG------------- 179 (393)
Q Consensus 123 ~~~G~~~~~I--------DDGW~~~~rd~~G~~~~d~~kF--P~Gl~~l~d~vh~~Gmk~Glw~~pg------------- 179 (393)
+++||+.|.| +..|. .+..+...++ .+| |..++.|++.+|++||++-|=+-+.
T Consensus 178 k~lG~t~velmPv~e~~~~~~wG---Y~~~~~~~~~-~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~~~d 253 (639)
T PRK14706 178 TYMGYTHVELLGVMEHPFDGSWG---YQVTGYYAPT-SRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLAHFD 253 (639)
T ss_pred HHcCCCEEEccchhcCCCCCCCC---cCcccccccc-cccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchhhhhccC
Confidence 7888887764 22231 1112233344 344 4579999999999999976432211
Q ss_pred -------------cc----cc---CCCCcccccHHhHHHHH-HHcCCcEEEeecCC
Q 016207 180 -------------VF----TC---QVRPGSLFHEKDDAPLF-ASWGVDYLKYDNCF 214 (393)
Q Consensus 180 -------------~~----~c---~~~pgs~~~~~~~~~~~-~~wGvdylK~D~~~ 214 (393)
.. ++ ..+|+++.|+-..++.+ .|.+||.+.+|...
T Consensus 254 g~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~iDG~R~Dav~ 309 (639)
T PRK14706 254 GGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFHVDGLRVDAVA 309 (639)
T ss_pred CCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeeh
Confidence 00 00 13566777776666664 68999999999743
No 46
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=83.87 E-value=3.3 Score=37.55 Aligned_cols=74 Identities=18% Similarity=0.183 Sum_probs=47.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCC----CHHHHHHHHHHcCCe--EEEE
Q 016207 102 ACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPS----GIKALADYVHGKGLK--LGIY 175 (393)
Q Consensus 102 ~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~----Gl~~l~d~vh~~Gmk--~Glw 175 (393)
..+.+++...+....| ++.|+++++| .|....+...+.-...+..|+. =+..+.+...+.||| +|||
T Consensus 14 ~~~~~~~~W~~~~~~m-----~~~GidtlIl--q~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~ 86 (166)
T PF14488_consen 14 HQNWTPAQWREEFRAM-----KAIGIDTLIL--QWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLY 86 (166)
T ss_pred hcCCCHHHHHHHHHHH-----HHcCCcEEEE--EEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCC
Confidence 3688999999999999 7788988877 3554222111110001122222 267777888999999 6999
Q ss_pred eeCCccc
Q 016207 176 SDAGVFT 182 (393)
Q Consensus 176 ~~pg~~~ 182 (393)
+++....
T Consensus 87 ~~~~~w~ 93 (166)
T PF14488_consen 87 FDPDYWD 93 (166)
T ss_pred CCchhhh
Confidence 8876543
No 47
>PRK14705 glycogen branching enzyme; Provisional
Probab=82.08 E-value=6.3 Score=46.34 Aligned_cols=99 Identities=19% Similarity=0.286 Sum_probs=58.5
Q ss_pred CHHHHHH-HHHHHHHcCCcccCceEEEe--------CCCcCCCCCCCCCCccccCCCC--CCCHHHHHHHHHHcCCeEEE
Q 016207 106 SETIIKE-TADALVSTGLAELGYDHVNI--------DDCWSSPLRDLKGQLVPDTITF--PSGIKALADYVHGKGLKLGI 174 (393)
Q Consensus 106 ~e~~i~~-~ad~~~~~gl~~~G~~~~~I--------DDGW~~~~rd~~G~~~~d~~kF--P~Gl~~l~d~vh~~Gmk~Gl 174 (393)
+...+.+ .++.+ +++||+.|.| |..|- -+..+...|+ .+| |+++|.|++.+|++||++-|
T Consensus 763 ~~~~l~~~lldYl-----k~LGvt~IeLmPv~e~p~~~swG---Y~~~~y~ap~-~ryGt~~dfk~lVd~~H~~GI~VIL 833 (1224)
T PRK14705 763 GYRELAKELVDYV-----KWLGFTHVEFMPVAEHPFGGSWG---YQVTSYFAPT-SRFGHPDEFRFLVDSLHQAGIGVLL 833 (1224)
T ss_pred chHHHHHHHHHHH-----HHhCCCEEEECccccCCCCCCCC---CCccccCCcC-cccCCHHHHHHHHHHHHHCCCEEEE
Confidence 4444433 35777 7788888764 22241 1222333344 244 45799999999999999875
Q ss_pred EeeCCcc-------------------cc--------------CCCCcccccHHhHHHH-HHHcCCcEEEeecC
Q 016207 175 YSDAGVF-------------------TC--------------QVRPGSLFHEKDDAPL-FASWGVDYLKYDNC 213 (393)
Q Consensus 175 w~~pg~~-------------------~c--------------~~~pgs~~~~~~~~~~-~~~wGvdylK~D~~ 213 (393)
=+-|.-. .+ ..+|.+..|+-..+.. +.+++||.+.+|..
T Consensus 834 D~V~nH~~~d~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyhiDGfR~Dav 906 (1224)
T PRK14705 834 DWVPAHFPKDSWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFHIDGLRVDAV 906 (1224)
T ss_pred EeccccCCcchhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCCcEEEeeh
Confidence 4332100 00 1234455566444444 56899999999985
No 48
>PLN02960 alpha-amylase
Probab=81.16 E-value=10 Score=43.09 Aligned_cols=100 Identities=15% Similarity=0.154 Sum_probs=59.1
Q ss_pred CHHHHH-HHHHHHHHcCCcccCceEEEeCC--------CcCCCCCCCCCCccccCCCC--CCCHHHHHHHHHHcCCeEEE
Q 016207 106 SETIIK-ETADALVSTGLAELGYDHVNIDD--------CWSSPLRDLKGQLVPDTITF--PSGIKALADYVHGKGLKLGI 174 (393)
Q Consensus 106 ~e~~i~-~~ad~~~~~gl~~~G~~~~~IDD--------GW~~~~rd~~G~~~~d~~kF--P~Gl~~l~d~vh~~Gmk~Gl 174 (393)
|...+. +.++.+ +++||+.|.|=- .|. -+..+...+++ +| |+.++.|++.+|++||++-|
T Consensus 414 tf~~~~e~~LdYL-----k~LGvt~IeLmPv~e~~~~~swG---Y~~~~yfa~~~-~yGtp~dfk~LVd~aH~~GI~VIL 484 (897)
T PLN02960 414 SFKEFTQKVLPHV-----KKAGYNAIQLIGVQEHKDYSSVG---YKVTNFFAVSS-RFGTPDDFKRLVDEAHGLGLLVFL 484 (897)
T ss_pred CHHHHHHHHHHHH-----HHcCCCEEEECCcccCCCCCCCC---CCcccCCCccc-ccCCHHHHHHHHHHHHHCCCEEEE
Confidence 455554 347777 788888877621 121 11112223332 23 45799999999999999755
Q ss_pred EeeCC---------------cc---------------cc----CCCCcccccHHhHHHH-HHHcCCcEEEeecCC
Q 016207 175 YSDAG---------------VF---------------TC----QVRPGSLFHEKDDAPL-FASWGVDYLKYDNCF 214 (393)
Q Consensus 175 w~~pg---------------~~---------------~c----~~~pgs~~~~~~~~~~-~~~wGvdylK~D~~~ 214 (393)
=+-+. .. .| ..+|.++.|+-..+.. +.+++||.+.+|...
T Consensus 485 DvV~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~EyhIDGfR~DAV~ 559 (897)
T PLN02960 485 DIVHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYRVDGFQFHSLG 559 (897)
T ss_pred EecccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHCCCceeecccc
Confidence 33210 00 00 1235566666555555 468999999999763
No 49
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=80.40 E-value=13 Score=39.75 Aligned_cols=63 Identities=21% Similarity=0.166 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCC-----ccccCCCCC--CCHHHHHHHHHHcCCeEEE
Q 016207 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQ-----LVPDTITFP--SGIKALADYVHGKGLKLGI 174 (393)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~-----~~~d~~kFP--~Gl~~l~d~vh~~Gmk~Gl 174 (393)
=+-..|.+.+|.+ +++|++.|.|=-=... .....|. ..+|+ +|- ..++.|++.+|++||++-+
T Consensus 25 Gdl~gi~~~Ldyl-----~~LGv~~i~L~Pi~~~-~~~~~gY~~~dy~~vd~-~~Gt~~df~~Lv~~ah~~Gi~vil 94 (539)
T TIGR02456 25 GDFPGLTSKLDYL-----KWLGVDALWLLPFFQS-PLRDDGYDVSDYRAILP-EFGTIDDFKDFVDEAHARGMRVII 94 (539)
T ss_pred cCHHHHHHhHHHH-----HHCCCCEEEECCCcCC-CCCCCCCCcccccccCh-hhCCHHHHHHHHHHHHHCCCEEEE
Confidence 4567788888888 7789988876432211 1111232 23443 442 2489999999999999765
No 50
>PRK05402 glycogen branching enzyme; Provisional
Probab=79.22 E-value=12 Score=41.71 Aligned_cols=102 Identities=19% Similarity=0.211 Sum_probs=58.8
Q ss_pred CHHHHHHH-HHHHHHcCCcccCceEEEeCCCcCCC-----CCCCCCCccccCCCC--CCCHHHHHHHHHHcCCeEEEEee
Q 016207 106 SETIIKET-ADALVSTGLAELGYDHVNIDDCWSSP-----LRDLKGQLVPDTITF--PSGIKALADYVHGKGLKLGIYSD 177 (393)
Q Consensus 106 ~e~~i~~~-ad~~~~~gl~~~G~~~~~IDDGW~~~-----~rd~~G~~~~d~~kF--P~Gl~~l~d~vh~~Gmk~Glw~~ 177 (393)
+.+.+.+. ++.+ +++||+.|.|=-=.+.. .-+..+...+++ +| |..++.|++.+|++||++-|=+-
T Consensus 263 ~~~~i~~~l~~yl-----k~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~-~~Gt~~dfk~lV~~~H~~Gi~VilD~V 336 (726)
T PRK05402 263 SYRELADQLIPYV-----KEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTS-RFGTPDDFRYFVDACHQAGIGVILDWV 336 (726)
T ss_pred CHHHHHHHHHHHH-----HHcCCCEEEECCcccCCCCCCCCCCcccCCCcCc-ccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 33444444 4776 78899888763221110 111112233442 33 34699999999999999765332
Q ss_pred CCc------------------------------ccc---CCCCcccccHHhHHHHH-HHcCCcEEEeecC
Q 016207 178 AGV------------------------------FTC---QVRPGSLFHEKDDAPLF-ASWGVDYLKYDNC 213 (393)
Q Consensus 178 pg~------------------------------~~c---~~~pgs~~~~~~~~~~~-~~wGvdylK~D~~ 213 (393)
+.- .+| ..+|.++.|+...++.+ .+.|||.+.+|..
T Consensus 337 ~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~iDG~R~D~v 406 (726)
T PRK05402 337 PAHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFHIDGLRVDAV 406 (726)
T ss_pred CCCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhCCcEEEECCH
Confidence 210 000 12455666775555554 5799999999964
No 51
>PRK10785 maltodextrin glucosidase; Provisional
Probab=77.84 E-value=19 Score=39.21 Aligned_cols=130 Identities=13% Similarity=0.105 Sum_probs=77.6
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCc-----cccCCCCCC--CHHHHHHHHHHcCCeEEEEe
Q 016207 104 NISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQL-----VPDTITFPS--GIKALADYVHGKGLKLGIYS 176 (393)
Q Consensus 104 ~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~-----~~d~~kFP~--Gl~~l~d~vh~~Gmk~Glw~ 176 (393)
.=|-+.|.+.+|.+ +++|++.|-|=-=.... ...|.+ .+|+ .|.. .++.|++.+|++|||+-|=+
T Consensus 175 GGDl~GI~~kLdYL-----~~LGv~~I~L~Pif~s~--s~hgYd~~Dy~~iDp-~~Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 175 GGDLDGISEKLPYL-----KKLGVTALYLNPIFTAP--SVHKYDTEDYRHVDP-QLGGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred CcCHHHHHHHHHHH-----HHcCCCEEEeCCcccCC--CCCCcCcccccccCc-ccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 34678899999999 78899888774333221 112222 3443 3432 59999999999999975422
Q ss_pred eC-------------------------------------Ccccc-----------CCCCcccccHHh----HHHHHH-H-
Q 016207 177 DA-------------------------------------GVFTC-----------QVRPGSLFHEKD----DAPLFA-S- 202 (393)
Q Consensus 177 ~p-------------------------------------g~~~c-----------~~~pgs~~~~~~----~~~~~~-~- 202 (393)
-+ +...| ..+|.+.+|+.. .++.+- +
T Consensus 247 V~NH~~~~~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~~~~w~g~~~lPdLN~~np~v~~~l~~~~~~v~~~Wl~~~ 326 (598)
T PRK10785 247 VFNHTGDSHPWFDRHNRGTGGACHHPDSPWRDWYSFSDDGRALDWLGYASLPKLDFQSEEVVNEIYRGEDSIVRHWLKAP 326 (598)
T ss_pred CCCcCCCCCHHHHHhhccccccccCCCCCcceeeEECCCCCcCCcCCCCcCccccCCCHHHHHHHHhhhhHHHHHhhcCC
Confidence 11 00001 124556666642 344433 3
Q ss_pred cCCcEEEeecCCCCCC-----CccccchHHHHHHHhcCCCceee
Q 016207 203 WGVDYLKYDNCFNLGI-----EPKKRYPPMRDALNETGCSIFYS 241 (393)
Q Consensus 203 wGvdylK~D~~~~~~~-----~~~~~y~~m~~AL~~agr~i~~s 241 (393)
.|||.+.+|....-.. ...+..+.+++++++..++.++-
T Consensus 327 ~giDG~RlDva~~v~~~~~~~~~~~f~~~~~~~vk~~~pd~~li 370 (598)
T PRK10785 327 YNIDGWRLDVVHMLGEGGGARNNLQHVAGITQAAKEENPEAYVL 370 (598)
T ss_pred CCCcEEEEecHhHhccccCccccHHHHHHHHHHHHhhCCCeEEE
Confidence 6999999998643211 11233457888887777776554
No 52
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=76.44 E-value=9.4 Score=37.57 Aligned_cols=87 Identities=21% Similarity=0.240 Sum_probs=59.6
Q ss_pred cccCceEEEeCCCcCCCCCCCCCCccccCC-----CCCCCHHHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHH
Q 016207 123 AELGYDHVNIDDCWSSPLRDLKGQLVPDTI-----TFPSGIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDA 197 (393)
Q Consensus 123 ~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~-----kFP~Gl~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~ 197 (393)
.++|.+.+.++|-|.... ..+++ -.|. ++.+++.+|+.|.+.++.... . .....
T Consensus 178 ~~~G~d~i~i~d~~~~~~-------~isp~~f~e~~~p~-~k~i~~~i~~~g~~~~lH~cG-~------------~~~~~ 236 (330)
T cd03465 178 IEAGADGIYISDPWASSS-------ILSPEDFKEFSLPY-LKKVFDAIKALGGPVIHHNCG-D------------TAPIL 236 (330)
T ss_pred HHhCCCEEEEeCCccccC-------CCCHHHHHHHhhHH-HHHHHHHHHHcCCceEEEECC-C------------chhHH
Confidence 456999999999886521 11221 2344 899999999999988885542 1 12568
Q ss_pred HHHHHcCCcEEEeecCCCCCCCccccchHHHHHHHhcCCCceee
Q 016207 198 PLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYS 241 (393)
Q Consensus 198 ~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~AL~~agr~i~~s 241 (393)
+.+.+.|+|-+-+|.+. .+.++.+..|+.+.+.
T Consensus 237 ~~l~~~~~d~~~~d~~~-----------dl~~~~~~~g~~~~i~ 269 (330)
T cd03465 237 ELMADLGADVFSIDVTV-----------DLAEAKKKVGDKACLM 269 (330)
T ss_pred HHHHHhCCCeEeecccC-----------CHHHHHHHhCCceEEE
Confidence 88999999999988874 3345555567655443
No 53
>PRK12568 glycogen branching enzyme; Provisional
Probab=76.09 E-value=22 Score=39.70 Aligned_cols=99 Identities=18% Similarity=0.222 Sum_probs=58.4
Q ss_pred CHHHHHHH-HHHHHHcCCcccCceEEEeC--------CCcCCCCCCCCCCccccCCCCC--CCHHHHHHHHHHcCCeEEE
Q 016207 106 SETIIKET-ADALVSTGLAELGYDHVNID--------DCWSSPLRDLKGQLVPDTITFP--SGIKALADYVHGKGLKLGI 174 (393)
Q Consensus 106 ~e~~i~~~-ad~~~~~gl~~~G~~~~~ID--------DGW~~~~rd~~G~~~~d~~kFP--~Gl~~l~d~vh~~Gmk~Gl 174 (393)
+...+.+. ++.+ +++||+.|.|= ..|. -+..|...++ .+|. ..++.|++.+|++||++-|
T Consensus 267 ~~~~la~~ll~yl-----k~LGvt~I~LmPi~e~~~~~~wG---Y~~~~~~a~~-~~~G~~~dfk~lV~~~H~~Gi~VIl 337 (730)
T PRK12568 267 DWPTLAEQLIPYV-----QQLGFTHIELLPITEHPFGGSWG---YQPLGLYAPT-ARHGSPDGFAQFVDACHRAGIGVIL 337 (730)
T ss_pred CHHHHHHHHHHHH-----HHcCCCEEEECccccCCCCCCCC---CCCCcCCccC-cccCCHHHHHHHHHHHHHCCCEEEE
Confidence 33444433 5666 77888887652 2231 1122334444 3453 4699999999999999765
Q ss_pred EeeCCc------------c------------------cc---CCCCcccccHHhHHHH-HHHcCCcEEEeecC
Q 016207 175 YSDAGV------------F------------------TC---QVRPGSLFHEKDDAPL-FASWGVDYLKYDNC 213 (393)
Q Consensus 175 w~~pg~------------~------------------~c---~~~pgs~~~~~~~~~~-~~~wGvdylK~D~~ 213 (393)
=+-+.- . ++ .++|.++.|+-..+.. +.+.|||.+.+|..
T Consensus 338 D~V~nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyhIDG~R~DAv 410 (730)
T PRK12568 338 DWVSAHFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYHLDGLRVDAV 410 (730)
T ss_pred EeccccCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhCceEEEEcCH
Confidence 432210 0 00 1245556666544444 46899999999974
No 54
>PRK12313 glycogen branching enzyme; Provisional
Probab=76.00 E-value=17 Score=39.85 Aligned_cols=102 Identities=20% Similarity=0.262 Sum_probs=60.3
Q ss_pred CHHHHHHH-HHHHHHcCCcccCceEEEeCCCcCCC-----CCCCCCCccccCCCC--CCCHHHHHHHHHHcCCeEEEEee
Q 016207 106 SETIIKET-ADALVSTGLAELGYDHVNIDDCWSSP-----LRDLKGQLVPDTITF--PSGIKALADYVHGKGLKLGIYSD 177 (393)
Q Consensus 106 ~e~~i~~~-ad~~~~~gl~~~G~~~~~IDDGW~~~-----~rd~~G~~~~d~~kF--P~Gl~~l~d~vh~~Gmk~Glw~~ 177 (393)
+...+.+. ++.+ +++|++.|.|=-=+... .-+..+...+++ +| |+.+|.|++.+|++||++-|=+-
T Consensus 168 ~~~~~~~~ll~yl-----~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~-~~Gt~~d~k~lv~~~H~~Gi~VilD~V 241 (633)
T PRK12313 168 SYRELADELIPYV-----KEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTS-RYGTPEDFMYLVDALHQNGIGVILDWV 241 (633)
T ss_pred CHHHHHHHHHHHH-----HHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCC-CCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 44555544 4777 78899888753222111 111122333442 34 34699999999999999765322
Q ss_pred CCc--------------------------c---cc----CCCCcccccHHhHHHHH-HHcCCcEEEeecC
Q 016207 178 AGV--------------------------F---TC----QVRPGSLFHEKDDAPLF-ASWGVDYLKYDNC 213 (393)
Q Consensus 178 pg~--------------------------~---~c----~~~pgs~~~~~~~~~~~-~~wGvdylK~D~~ 213 (393)
+.- . .+ ..+|++++|+...++.+ .++|||.+.+|..
T Consensus 242 ~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~iDG~R~D~~ 311 (633)
T PRK12313 242 PGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYHLDGLRVDAV 311 (633)
T ss_pred CCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCh
Confidence 110 0 00 12456667776566654 5789999999964
No 55
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=74.56 E-value=8.8 Score=36.32 Aligned_cols=83 Identities=18% Similarity=0.052 Sum_probs=54.5
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCcEEEeecCCCCCCCccccchHHHHHHHhcCCC
Q 016207 158 IKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCS 237 (393)
Q Consensus 158 l~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~AL~~agr~ 237 (393)
++.+++.+|..||++=|+..+-.... ......+.+....+...+.|.||||.-.-.. .....+.-..|+++..++..|
T Consensus 114 i~~v~~~~~~~gl~vIlE~~l~~~~~-~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~-~~~t~~~~~~~~~~~~~~~~p 191 (236)
T PF01791_consen 114 IAAVVEECHKYGLKVILEPYLRGEEV-ADEKKPDLIARAARIAAELGADFVKTSTGKP-VGATPEDVELMRKAVEAAPVP 191 (236)
T ss_dssp HHHHHHHHHTSEEEEEEEECECHHHB-SSTTHHHHHHHHHHHHHHTT-SEEEEE-SSS-SCSHHHHHHHHHHHHHTHSST
T ss_pred HHHHHHHHhcCCcEEEEEEecCchhh-cccccHHHHHHHHHHHHHhCCCEEEecCCcc-ccccHHHHHHHHHHHHhcCCC
Confidence 88999999999999988743321111 1111233556677888999999999998844 222334456788888877777
Q ss_pred ----ceeec
Q 016207 238 ----IFYSL 242 (393)
Q Consensus 238 ----i~~sl 242 (393)
+.++.
T Consensus 192 ~~~~Vk~sG 200 (236)
T PF01791_consen 192 GKVGVKASG 200 (236)
T ss_dssp TTSEEEEES
T ss_pred cceEEEEeC
Confidence 77763
No 56
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=71.58 E-value=34 Score=29.84 Aligned_cols=61 Identities=16% Similarity=0.166 Sum_probs=38.5
Q ss_pred HHHHHHHHcCCcccCceEEEeCCC--cCCC-CCCCCCCccccCCCCCCCHHHHHHHHHHcCCeEEEEeeCC
Q 016207 112 ETADALVSTGLAELGYDHVNIDDC--WSSP-LRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAG 179 (393)
Q Consensus 112 ~~ad~~~~~gl~~~G~~~~~IDDG--W~~~-~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Glw~~pg 179 (393)
+.++.+ +++|++.++|..+ +.-. .....|...+.-+ -+=|+.+++.+|++|+++=+|++..
T Consensus 4 ~~~~~l-----k~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~--~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 4 QFVDTL-----KEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLK--RDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHH-----HHhCCCEEEEEcccccEEEEccCCCCcCCCCCC--cCHHHHHHHHHHHCCCEEEEEEeee
Confidence 445555 6678999999665 2110 1111233333322 2337999999999999999999764
No 57
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=71.33 E-value=13 Score=37.64 Aligned_cols=83 Identities=16% Similarity=0.073 Sum_probs=53.3
Q ss_pred HHHHHHHHHcCCeEEEEeeCC-ccccCCCCcccc-cHHhHHHHHHHcCCcEEEeecCCCCCCC--ccccch----HHHHH
Q 016207 159 KALADYVHGKGLKLGIYSDAG-VFTCQVRPGSLF-HEKDDAPLFASWGVDYLKYDNCFNLGIE--PKKRYP----PMRDA 230 (393)
Q Consensus 159 ~~l~d~vh~~Gmk~Glw~~pg-~~~c~~~pgs~~-~~~~~~~~~~~wGvdylK~D~~~~~~~~--~~~~y~----~m~~A 230 (393)
+.++.+.|++|+|+-+ ..+ ...-...|..+. +++..++.++++|+|.|-+|+-+..... ..+.|. .++++
T Consensus 67 ~~~~~~A~~~~v~v~~--~~~~~~~~l~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~~~~d~~~~t~llkelr~~ 144 (358)
T cd02875 67 DELLCYAHSKGVRLVL--KGDVPLEQISNPTYRTQWIQQKVELAKSQFMDGINIDIEQPITKGSPEYYALTELVKETTKA 144 (358)
T ss_pred HHHHHHHHHcCCEEEE--ECccCHHHcCCHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCCCcchHHHHHHHHHHHHHH
Confidence 5888899999999642 211 111123444443 6788899999999999999998775322 234454 44555
Q ss_pred HHhcCCCceeecc
Q 016207 231 LNETGCSIFYSLC 243 (393)
Q Consensus 231 L~~agr~i~~slc 243 (393)
|.+.++...++++
T Consensus 145 l~~~~~~~~Lsva 157 (358)
T cd02875 145 FKKENPGYQISFD 157 (358)
T ss_pred HhhcCCCcEEEEE
Confidence 5555555556553
No 58
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=70.61 E-value=42 Score=36.12 Aligned_cols=63 Identities=21% Similarity=0.312 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCC----CCCCccccCCCCC--CCHHHHHHHHHHcCCeEEE
Q 016207 106 SETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRD----LKGQLVPDTITFP--SGIKALADYVHGKGLKLGI 174 (393)
Q Consensus 106 ~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd----~~G~~~~d~~kFP--~Gl~~l~d~vh~~Gmk~Gl 174 (393)
+...|.+.++.+ +++|++.+.|---......+ ......+|+ +|- ..++.|++.+|++||++-+
T Consensus 25 ~~~gi~~~l~yl-----~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~-~~Gt~~~~~~lv~~ah~~gi~vil 93 (543)
T TIGR02403 25 DLRGIIEKLDYL-----KKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINP-LFGTMADFEELVSEAKKRNIKIML 93 (543)
T ss_pred CHHHHHHhHHHH-----HHcCCCEEEECCcccCCCCCCCCCccccCccCc-ccCCHHHHHHHHHHHHHCCCEEEE
Confidence 566778888888 78899988876544432111 111233443 343 2599999999999999764
No 59
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.10 E-value=25 Score=36.69 Aligned_cols=137 Identities=10% Similarity=0.103 Sum_probs=82.9
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEE-eCCCcCCCCCCCCCCccccCCC-C--C---CCHHHHHHHHHHcCCeEEEEe
Q 016207 104 NISETIIKETADALVSTGLAELGYDHVN-IDDCWSSPLRDLKGQLVPDTIT-F--P---SGIKALADYVHGKGLKLGIYS 176 (393)
Q Consensus 104 ~i~e~~i~~~ad~~~~~gl~~~G~~~~~-IDDGW~~~~rd~~G~~~~d~~k-F--P---~Gl~~l~d~vh~~Gmk~Glw~ 176 (393)
-.++.++++..|.+.+.|+... |++ .-+|..- ...+..-|..+... + . +=|+.+++..|++||++==|+
T Consensus 60 ~~~~~el~~~ld~l~~ln~NTv---~~qV~~~G~~l-ypS~~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf 135 (418)
T COG1649 60 LFQRQELKDILDDLQKLNFNTV---YPQVWNDGDAL-YPSAVLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVHAWF 135 (418)
T ss_pred cccHHHHHHHHHHHHHcCCcee---EEEEecCcccc-ccccccccccCcCcccCCCCCCChHHHHHHHHHhcCCeeeech
Confidence 3688999999999955444432 233 2233321 11111112222100 0 1 227888999999999999999
Q ss_pred eCCccc-----------------------------------cCCCCcccccHHh-HHHHHHHcCCcEEEeecCCCCC---
Q 016207 177 DAGVFT-----------------------------------CQVRPGSLFHEKD-DAPLFASWGVDYLKYDNCFNLG--- 217 (393)
Q Consensus 177 ~pg~~~-----------------------------------c~~~pgs~~~~~~-~~~~~~~wGvdylK~D~~~~~~--- 217 (393)
+++... -+.+|.+++|+.. .++..+.+.||.|-+|--....
T Consensus 136 ~~~~~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~YdvDGIQfDd~fy~~~~~ 215 (418)
T COG1649 136 NPYRMAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNYDVDGIQFDDYFYYPIPF 215 (418)
T ss_pred hhcccCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCCCCCceecceeecccCcc
Confidence 986310 0346778888854 4677889999999999743210
Q ss_pred -CC------------------cc-----------ccchHHHHHHHhcCCCceeeccC
Q 016207 218 -IE------------------PK-----------KRYPPMRDALNETGCSIFYSLCE 244 (393)
Q Consensus 218 -~~------------------~~-----------~~y~~m~~AL~~agr~i~~slc~ 244 (393)
.+ +. ..+..+..++++..+.+.++++.
T Consensus 216 gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VKavKp~v~~svsp 272 (418)
T COG1649 216 GYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTVKAVKPNVKFSVSP 272 (418)
T ss_pred ccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHhhCCCeEEEEcc
Confidence 00 00 11234556678889999999875
No 60
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=69.46 E-value=5.4 Score=40.72 Aligned_cols=87 Identities=21% Similarity=0.231 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccccCC
Q 016207 106 SETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQV 185 (393)
Q Consensus 106 ~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Glw~~pg~~~c~~ 185 (393)
+.+..++.++.| +++|++++-.= =..... |++.+-.-++.|.+++|++||++-+=+.|.
T Consensus 12 ~~~~~~~yi~~a-----~~~Gf~~iFTS--L~ipe~--------~~~~~~~~~~~l~~~a~~~~~~v~~Disp~------ 70 (357)
T PF05913_consen 12 SFEENKAYIEKA-----AKYGFKRIFTS--LHIPED--------DPEDYLERLKELLKLAKELGMEVIADISPK------ 70 (357)
T ss_dssp -HHHHHHHHHHH-----HCTTEEEEEEE--E-----------------HHHHHHHHHHHHHHCT-EEEEEE-CC------
T ss_pred CHHHHHHHHHHH-----HHCCCCEEECC--CCcCCC--------CHHHHHHHHHHHHHHHHHCCCEEEEECCHH------
Confidence 588889999988 66777665431 111111 112222248999999999999987655554
Q ss_pred CCcccccH---HhHHHHHHHcCCcEEEeecCCCC
Q 016207 186 RPGSLFHE---KDDAPLFASWGVDYLKYDNCFNL 216 (393)
Q Consensus 186 ~pgs~~~~---~~~~~~~~~wGvdylK~D~~~~~ 216 (393)
++.++ ..+.+.|+++||+.|.+|+-...
T Consensus 71 ---~l~~lg~~~~dl~~~~~lGi~~lRlD~Gf~~ 101 (357)
T PF05913_consen 71 ---VLKKLGISYDDLSFFKELGIDGLRLDYGFSG 101 (357)
T ss_dssp ---HHHTTT-BTTBTHHHHHHT-SEEEESSS-SC
T ss_pred ---HHHHcCCCHHHHHHHHHcCCCEEEECCCCCH
Confidence 34444 23467899999999999997654
No 61
>PRK06233 hypothetical protein; Provisional
Probab=68.56 E-value=25 Score=35.96 Aligned_cols=108 Identities=13% Similarity=-0.020 Sum_probs=61.8
Q ss_pred hhCCCCCHHHHHHHHHHHHH--cCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCC---CH--------HHHHHHHH
Q 016207 100 FFACNISETIIKETADALVS--TGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPS---GI--------KALADYVH 166 (393)
Q Consensus 100 ~~~~~i~e~~i~~~ad~~~~--~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~---Gl--------~~l~d~vh 166 (393)
.+|.+ .++.+.+.|+++.+ ..|.++|+.+++|||--....++.. ..+ ..+|. .. +.+-.-+.
T Consensus 157 ~~Y~~-~eel~~dlA~a~~~Ei~~L~~aG~~~IQiDeP~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~N~~~~ 231 (372)
T PRK06233 157 KFYDS-WDDYLDDLAQAYHDTIQHFYDLGARYIQLDDTTWAYLISKL---NDT-ENDPKEHQKYVKLAEDAVYVINKALA 231 (372)
T ss_pred ccCCC-HHHHHHHHHHHHHHHHHHHHHCCCCEEEEcCCCHHhhhccc---ccc-ccchhhhhhHHHHHHHHHHHHHHHHh
Confidence 35544 46777777777765 3567899999999997643222211 000 01111 11 11212233
Q ss_pred Hc--CCeEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCcEEEeecCC
Q 016207 167 GK--GLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCF 214 (393)
Q Consensus 167 ~~--Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~~~ 214 (393)
.. ++++++++..|... +...+.+-++..+..+.+..+|.+=+++-.
T Consensus 232 ~~p~d~~i~~H~C~Gn~~--~~~~~~g~y~~i~~~l~~~~vd~~~lE~~~ 279 (372)
T PRK06233 232 DLPEDLTVTTHICRGNFK--STYLFSGGYEPVAKYLGQLNYDGFFLEYDN 279 (372)
T ss_pred CCCcCCEEEEEeeCCCCC--CcccccCcHHHHHHHHHhCCCCEEEEecCC
Confidence 33 77888888776432 222223334456777888999999999854
No 62
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=68.22 E-value=30 Score=33.96 Aligned_cols=77 Identities=16% Similarity=0.087 Sum_probs=54.0
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCccccCC-CCcccccHHhHHHHHHHcCCcEEEeecCCCCCCCccccchHHHHHHHhcCC
Q 016207 158 IKALADYVHGKGLKLGIYSDAGVFTCQV-RPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGC 236 (393)
Q Consensus 158 l~~l~d~vh~~Gmk~Glw~~pg~~~c~~-~pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~AL~~agr 236 (393)
+..+++..|+.||-+-+|.-|--..... .....+.+....+.=+|.|.|.||.++.... ..|+++.+.++-
T Consensus 132 ~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg~~--------e~F~~vv~~~~v 203 (265)
T COG1830 132 ISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKYTGDP--------ESFRRVVAACGV 203 (265)
T ss_pred HHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeecCCCCh--------HHHHHHHHhCCC
Confidence 7788889999999999998764322111 1222333444455667999999999987643 577888888998
Q ss_pred Cceeec
Q 016207 237 SIFYSL 242 (393)
Q Consensus 237 ~i~~sl 242 (393)
|++++.
T Consensus 204 pVviaG 209 (265)
T COG1830 204 PVVIAG 209 (265)
T ss_pred CEEEeC
Confidence 888763
No 63
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=67.79 E-value=35 Score=33.32 Aligned_cols=105 Identities=17% Similarity=0.085 Sum_probs=65.6
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccccC
Q 016207 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQ 184 (393)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Glw~~pg~~~c~ 184 (393)
.+++.+++.|+.+ +++|.+++-. +=++ .|..-..|.-- -..|++.|.++.++.|+.+.- ++
T Consensus 38 e~~~~~~~~A~~l-----k~~g~~~~r~--~~~k-pRTs~~s~~G~---g~~gl~~l~~~~~~~Gl~~~t--e~------ 98 (266)
T PRK13398 38 ESEEQMVKVAEKL-----KELGVHMLRG--GAFK-PRTSPYSFQGL---GEEGLKILKEVGDKYNLPVVT--EV------ 98 (266)
T ss_pred CCHHHHHHHHHHH-----HHcCCCEEEE--eeec-CCCCCCccCCc---HHHHHHHHHHHHHHcCCCEEE--ee------
Confidence 4899999999999 4566665544 2223 33321111100 035899999999999998753 22
Q ss_pred CCCcccccHHhHHHHHHHcCCcEEEeecCCCCCCCccccchHHHHHHHhcCCCceeecc
Q 016207 185 VRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYSLC 243 (393)
Q Consensus 185 ~~pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~AL~~agr~i~~slc 243 (393)
+-...++.+.+. +|++|+=-..... ..+.+++.++|.|++++..
T Consensus 99 -------~d~~~~~~l~~~-vd~~kIga~~~~n-------~~LL~~~a~~gkPV~lk~G 142 (266)
T PRK13398 99 -------MDTRDVEEVADY-ADMLQIGSRNMQN-------FELLKEVGKTKKPILLKRG 142 (266)
T ss_pred -------CChhhHHHHHHh-CCEEEECcccccC-------HHHHHHHhcCCCcEEEeCC
Confidence 222355666777 8999974432211 3466666778889888754
No 64
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=66.68 E-value=22 Score=36.50 Aligned_cols=107 Identities=14% Similarity=0.198 Sum_probs=66.0
Q ss_pred CCCCHHHHHHHHHHHHH--cCCcccCceEEEeCC---CcC---------CCCCCCCCCccccCCCCCCCHHHHHHHHHHc
Q 016207 103 CNISETIIKETADALVS--TGLAELGYDHVNIDD---CWS---------SPLRDLKGQLVPDTITFPSGIKALADYVHGK 168 (393)
Q Consensus 103 ~~i~e~~i~~~ad~~~~--~gl~~~G~~~~~IDD---GW~---------~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~ 168 (393)
..+|+++|.+.++..++ ...+++|++-|.|=. |+- ....|.+|-=.-+..+| +..+++.|++.
T Consensus 138 ~~mt~~eI~~ii~~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf---~~eii~~vr~~ 214 (382)
T cd02931 138 RELTTEEVETFVGKFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRF---AIEIVEEIKAR 214 (382)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHH---HHHHHHHHHHh
Confidence 45899998888776543 223468999999986 772 22345565434455666 56888888763
Q ss_pred ---CCeEEEEeeCCccccC----CCC------cccccH--HhHHHHHHHcCCcEEEeec
Q 016207 169 ---GLKLGIYSDAGVFTCQ----VRP------GSLFHE--KDDAPLFASWGVDYLKYDN 212 (393)
Q Consensus 169 ---Gmk~Glw~~pg~~~c~----~~p------gs~~~~--~~~~~~~~~wGvdylK~D~ 212 (393)
++.+|+=+.+....+. ..| +..... ...++.+.+.|+|||-+-.
T Consensus 215 ~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~ 273 (382)
T cd02931 215 CGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDA 273 (382)
T ss_pred cCCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCC
Confidence 5677776665211110 111 222222 3567888899999998753
No 65
>PRK06852 aldolase; Validated
Probab=64.67 E-value=34 Score=34.22 Aligned_cols=80 Identities=14% Similarity=0.096 Sum_probs=53.9
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCcEEEeecCCCCCCCccccchHHHHHHHhcC-C
Q 016207 158 IKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETG-C 236 (393)
Q Consensus 158 l~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~AL~~ag-r 236 (393)
+..+++..|+.||-+-+|.-|--.. ...+...+++...++.-+|.|.|.||..++..... ..-..++++.+.+| .
T Consensus 156 l~~v~~ea~~~GlPll~~~yprG~~-i~~~~~~~~ia~aaRiaaELGADIVKv~y~~~~~~---g~~e~f~~vv~~~g~v 231 (304)
T PRK06852 156 AAQIIYEAHKHGLIAVLWIYPRGKA-VKDEKDPHLIAGAAGVAACLGADFVKVNYPKKEGA---NPAELFKEAVLAAGRT 231 (304)
T ss_pred HHHHHHHHHHhCCcEEEEeeccCcc-cCCCccHHHHHHHHHHHHHHcCCEEEecCCCcCCC---CCHHHHHHHHHhCCCC
Confidence 7888999999999998887663211 12222334666677788899999999999853211 11246677777784 5
Q ss_pred Cceee
Q 016207 237 SIFYS 241 (393)
Q Consensus 237 ~i~~s 241 (393)
|++++
T Consensus 232 pVvia 236 (304)
T PRK06852 232 KVVCA 236 (304)
T ss_pred cEEEe
Confidence 66665
No 66
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=64.41 E-value=54 Score=33.54 Aligned_cols=103 Identities=15% Similarity=0.083 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccccCC
Q 016207 106 SETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQV 185 (393)
Q Consensus 106 ~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Glw~~pg~~~c~~ 185 (393)
+++.+.+.|..+ ++.|+.++- .|.+......++..-+. ..|++.|.++.++.|+.+-- +|
T Consensus 130 ~~~~~~~~A~~l-----k~~g~~~~r--~~~~kpRtsp~~f~g~~----~e~l~~L~~~~~~~Gl~~~t--~v------- 189 (360)
T PRK12595 130 SYEQVEAVAKAL-----KAKGLKLLR--GGAFKPRTSPYDFQGLG----VEGLKILKQVADEYGLAVIS--EI------- 189 (360)
T ss_pred CHHHHHHHHHHH-----HHcCCcEEE--ccccCCCCCCccccCCC----HHHHHHHHHHHHHcCCCEEE--ee-------
Confidence 689999999998 556766554 45555222222222111 14799999999999998742 22
Q ss_pred CCcccccHHhHHHHHHHcCCcEEEeecCCCCCCCccccchHHHHHHHhcCCCceeec
Q 016207 186 RPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYSL 242 (393)
Q Consensus 186 ~pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~AL~~agr~i~~sl 242 (393)
|-...++.+.+. +|.+|+=-..... ..+.+++.++|.||+++.
T Consensus 190 ------~d~~~~~~l~~~-vd~lkI~s~~~~n-------~~LL~~~a~~gkPVilk~ 232 (360)
T PRK12595 190 ------VNPADVEVALDY-VDVIQIGARNMQN-------FELLKAAGRVNKPVLLKR 232 (360)
T ss_pred ------CCHHHHHHHHHh-CCeEEECcccccC-------HHHHHHHHccCCcEEEeC
Confidence 233467778888 9999985432211 356666677788888874
No 67
>PLN00196 alpha-amylase; Provisional
Probab=63.70 E-value=23 Score=37.06 Aligned_cols=70 Identities=24% Similarity=0.395 Sum_probs=45.5
Q ss_pred EEechhhhCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCcc-----ccCCCCCC--CHHHHHHHHH
Q 016207 94 GWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLV-----PDTITFPS--GIKALADYVH 166 (393)
Q Consensus 94 GwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~-----~d~~kFP~--Gl~~l~d~vh 166 (393)
.|++|..-+ -....|.+.++.+ +++|+..|-|=--... ....|.+. +|+.+|-+ -++.|++.+|
T Consensus 32 ~W~~~~~~g--g~~~~i~~kldyL-----~~LGvtaIWL~P~~~s--~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH 102 (428)
T PLN00196 32 NWESWKQNG--GWYNFLMGKVDDI-----AAAGITHVWLPPPSHS--VSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFH 102 (428)
T ss_pred ccCCCCCCC--cCHHHHHHHHHHH-----HHcCCCEEEeCCCCCC--CCCCCCCccccCCCCcccCCCHHHHHHHHHHHH
Confidence 466665422 2456788889988 7788888766433322 11234433 45556642 3999999999
Q ss_pred HcCCeE
Q 016207 167 GKGLKL 172 (393)
Q Consensus 167 ~~Gmk~ 172 (393)
++|||+
T Consensus 103 ~~GIkV 108 (428)
T PLN00196 103 GKGVQV 108 (428)
T ss_pred HCCCEE
Confidence 999996
No 68
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=61.85 E-value=1.1e+02 Score=29.30 Aligned_cols=121 Identities=19% Similarity=0.212 Sum_probs=72.7
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCC-cCCCCCCCCCCccccC-CCCCCC-HHHHHHHHHHcCCeEEEEeeCCc-
Q 016207 105 ISETIIKETADALVSTGLAELGYDHVNIDDC-WSSPLRDLKGQLVPDT-ITFPSG-IKALADYVHGKGLKLGIYSDAGV- 180 (393)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDG-W~~~~rd~~G~~~~d~-~kFP~G-l~~l~d~vh~~Gmk~Glw~~pg~- 180 (393)
++++++........+ .|.+.||+.+.+=|- =|. .+..+. --||+= +.+++..+... .++|+-+--..
T Consensus 67 ls~~~v~~~lq~~i~-~le~~G~d~illlCTG~F~-------~l~~~~~lleP~ril~~lV~al~~~-~~vGVivP~~eQ 137 (221)
T PF07302_consen 67 LSKKKVEPRLQACIA-QLEAQGYDVILLLCTGEFP-------GLTARNPLLEPDRILPPLVAALVGG-HQVGVIVPLPEQ 137 (221)
T ss_pred EEHHHHHHHHHHHHH-HHHHCCCCEEEEeccCCCC-------CCCCCcceeehHHhHHHHHHHhcCC-CeEEEEecCHHH
Confidence 566666655443222 235678888887421 111 111111 233432 67788777766 79998663210
Q ss_pred ----------cc---c--CCCC--cccccHHhHHHHHHHcCCcEEEeecCCCCCCCccccchHHHHHHH-hcCCCceeec
Q 016207 181 ----------FT---C--QVRP--GSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALN-ETGCSIFYSL 242 (393)
Q Consensus 181 ----------~~---c--~~~p--gs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~AL~-~agr~i~~sl 242 (393)
.. | ...| |..+-+..-++.++++|.|+|=+|..++. ..|++.++ .+|.|++++.
T Consensus 138 ~~~~~~kW~~l~~~~~~a~asPy~~~~~~l~~Aa~~L~~~gadlIvLDCmGYt--------~~~r~~~~~~~g~PVlLsr 209 (221)
T PF07302_consen 138 IAQQAEKWQPLGNPVVVAAASPYEGDEEELAAAARELAEQGADLIVLDCMGYT--------QEMRDIVQRALGKPVLLSR 209 (221)
T ss_pred HHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEECCCCC--------HHHHHHHHHHhCCCEEeHH
Confidence 00 1 1223 44555567788999999999999998753 47777774 5799998874
No 69
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=60.55 E-value=61 Score=38.51 Aligned_cols=84 Identities=20% Similarity=0.174 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHcCCeEEEEeeC----------------------------C---c----cccC-----CCCcccccHHhH
Q 016207 157 GIKALADYVHGKGLKLGIYSDA----------------------------G---V----FTCQ-----VRPGSLFHEKDD 196 (393)
Q Consensus 157 Gl~~l~d~vh~~Gmk~Glw~~p----------------------------g---~----~~c~-----~~pgs~~~~~~~ 196 (393)
.+|.|++.+|++||++-|=+-. + . ..|. .+|.+..++...
T Consensus 248 efk~lV~~~H~~GI~VILDvV~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~~i~d~ 327 (1221)
T PRK14510 248 EFAQAIKEAQSAGIAVILDVVFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILRLPMDV 327 (1221)
T ss_pred HHHHHHHHHHHCCCEEEEEEccccccCCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHHHHHHH
Confidence 3999999999999997542211 0 0 1121 245666677667
Q ss_pred HHHHHHcCCcEEEeecCCCCCCCccccchHHHHHHHhcCCCcee
Q 016207 197 APLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFY 240 (393)
Q Consensus 197 ~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~AL~~agr~i~~ 240 (393)
++.+.+.|||.+.+|-...-+..+......+...+++...+.++
T Consensus 328 lr~Wv~~gVDGfRfDla~~l~r~~~~f~~~~~~~l~ai~~d~~l 371 (1221)
T PRK14510 328 LRSWAKRGVDGFRLDLADELAREPDGFIDEFRQFLKAMDQDPVL 371 (1221)
T ss_pred HHHHHHhCCCEEEEechhhhccCccchHHHHHHHHHHhCCCcCc
Confidence 77777799999999986654322223335566666665554443
No 70
>cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism.
Probab=60.17 E-value=16 Score=35.58 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=34.2
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCcEEEeecC
Q 016207 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNC 213 (393)
Q Consensus 159 ~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~~ 213 (393)
+.+++.+|++|+++..|+.+.. ....++.+.++|||+|-.|.+
T Consensus 248 ~~~v~~~~~~Gl~v~~wTv~~n------------~~~~~~~l~~~GVdgIiTD~~ 290 (290)
T cd08607 248 PSQIELAKSLGLVVFCWGDDLN------------DPENRKKLKELGVDGLIYDRI 290 (290)
T ss_pred hHHHHHHHHcCCEEEEECCCCC------------CHHHHHHHHHcCCCEEEecCC
Confidence 5789999999999999987211 024678899999999998864
No 71
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=59.31 E-value=1.1e+02 Score=35.95 Aligned_cols=86 Identities=13% Similarity=0.085 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHcCCeEEEEe--------------eCCc------------ccc-----CCCCcccccHHhHHHHH-HHcC
Q 016207 157 GIKALADYVHGKGLKLGIYS--------------DAGV------------FTC-----QVRPGSLFHEKDDAPLF-ASWG 204 (393)
Q Consensus 157 Gl~~l~d~vh~~Gmk~Glw~--------------~pg~------------~~c-----~~~pgs~~~~~~~~~~~-~~wG 204 (393)
.+|.|++.+|++||++-|=+ .|++ ..| ..+|.++.|+-..++.+ .++|
T Consensus 556 EfK~LV~alH~~GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~ey~ 635 (1111)
T TIGR02102 556 EFKNLINEIHKRGMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVDEFK 635 (1111)
T ss_pred HHHHHHHHHHHCCCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHHhcC
Confidence 49999999999999975421 1111 012 12455666665555555 4799
Q ss_pred CcEEEeecCCCCCCCccccchHHHHHHHhcCCCceeeccCC
Q 016207 205 VDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYSLCEW 245 (393)
Q Consensus 205 vdylK~D~~~~~~~~~~~~y~~m~~AL~~agr~i~~slc~~ 245 (393)
||.+.+|....-. .+....++.++.+..+.+++-.-.|
T Consensus 636 VDGFRfDl~g~~d---~~~~~~~~~~l~~~dP~~~liGE~W 673 (1111)
T TIGR02102 636 VDGFRFDMMGDHD---AASIEIAYKEAKAINPNIIMIGEGW 673 (1111)
T ss_pred CcEEEEeccccCC---HHHHHHHHHHHHHhCcCEEEEEecc
Confidence 9999999864321 2233455666666666655543334
No 72
>KOG3340 consensus Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=59.26 E-value=17 Score=36.80 Aligned_cols=54 Identities=13% Similarity=0.152 Sum_probs=34.1
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCc--cccC-----------CCCcccccHHhHHHHHHHcCCcEEEeec
Q 016207 158 IKALADYVHGKGLKLGIYSDAGV--FTCQ-----------VRPGSLFHEKDDAPLFASWGVDYLKYDN 212 (393)
Q Consensus 158 l~~l~d~vh~~Gmk~Glw~~pg~--~~c~-----------~~pgs~~~~~~~~~~~~~wGvdylK~D~ 212 (393)
.++|++.+++.+++||||+.+.. ..|- ..|. ..++-+..+++.++.-+.|=-|.
T Consensus 152 V~EL~~A~rk~dirfGLY~SlfEwfhplyl~d~~~~f~~~~f~~-~k~lpem~eLVtkY~PeviWSDG 218 (454)
T KOG3340|consen 152 VGELASAIRKRDIRFGLYYSLFEWFHPLYLDDKKHLFNTQHFPE-EKTLPEMYELVTKYNPEVIWSDG 218 (454)
T ss_pred HHHHHHHHHhcCcceeEeecHHHhhchhhccchhhcccccccch-hcchHHHHHHHHhcCCceEeeCC
Confidence 69999999999999999998752 1231 0111 22233455666666666665554
No 73
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=58.94 E-value=32 Score=34.44 Aligned_cols=101 Identities=15% Similarity=0.026 Sum_probs=58.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCC--CccccCCCCCC----CHHHHHHHHHHcCCeEEEEe
Q 016207 103 CNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKG--QLVPDTITFPS----GIKALADYVHGKGLKLGIYS 176 (393)
Q Consensus 103 ~~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G--~~~~d~~kFP~----Gl~~l~d~vh~~Gmk~Glw~ 176 (393)
..-+.+.=+++++++.+. |++.++- ..+-|.+- .|. +.||. -|+.|++..++.|++|+.=+
T Consensus 10 ~PWs~e~R~~l~~f~~~~-----kmN~YiY-----APKdDpyhr~~Wr---e~Yp~~el~~l~~L~~~a~~~~V~Fv~ai 76 (306)
T PF07555_consen 10 RPWSHEDRLDLIRFLGRY-----KMNTYIY-----APKDDPYHRSKWR---EPYPEEELAELKELADAAKANGVDFVYAI 76 (306)
T ss_dssp S---HHHHHHHHHHHHHT-----T--EEEE-------TT-TTTTTTTT---S---HHHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCCCHHHHHHHHHHHHHc-----CCceEEE-----CCCCChHHHhhhc---ccCCHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 367889999999999554 4444442 32333331 231 44553 48999999999999999999
Q ss_pred eCCccccCCCCcccccHHhHHHHHHHcCCcEEEeecCCCC
Q 016207 177 DAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNL 216 (393)
Q Consensus 177 ~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~~~~~ 216 (393)
.||...|.+.+....-+..-++++.+.||+.+=+=|-..+
T Consensus 77 sPg~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi~ 116 (306)
T PF07555_consen 77 SPGLDICYSSEEDFEALKAKFDQLYDLGVRSFAILFDDID 116 (306)
T ss_dssp BGTTT--TSHHHHHHHHHHHHHHHHCTT--EEEEE-TS-S
T ss_pred CcccccccCcHHHHHHHHHHHHHHHhcCCCEEEEeecCCC
Confidence 9998777443334444445567788999999888775443
No 74
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=58.52 E-value=96 Score=30.52 Aligned_cols=105 Identities=21% Similarity=0.301 Sum_probs=64.1
Q ss_pred CCCCHHHHHHHHHHHHH--cCCcccCceEEEeCCC--c------C---CCCCCCCCCccccCCCCCCCHHHHHHHHHHc-
Q 016207 103 CNISETIIKETADALVS--TGLAELGYDHVNIDDC--W------S---SPLRDLKGQLVPDTITFPSGIKALADYVHGK- 168 (393)
Q Consensus 103 ~~i~e~~i~~~ad~~~~--~gl~~~G~~~~~IDDG--W------~---~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~- 168 (393)
..+|+++|.+.++.+++ ....++|++-|.|-.+ + . ....|.+|--.-+..+| +..+++.|++.
T Consensus 129 ~~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~---~~eii~avr~~~ 205 (327)
T cd02803 129 REMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARF---LLEIVAAVREAV 205 (327)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHH---HHHHHHHHHHHc
Confidence 35888999888776654 2345789999988764 2 1 11234443322344444 56788888764
Q ss_pred --CCeEEEEeeCCccccCCCCcc--cccHHhHHHHHHHcCCcEEEeecCC
Q 016207 169 --GLKLGIYSDAGVFTCQVRPGS--LFHEKDDAPLFASWGVDYLKYDNCF 214 (393)
Q Consensus 169 --Gmk~Glw~~pg~~~c~~~pgs--~~~~~~~~~~~~~wGvdylK~D~~~ 214 (393)
++.+|+=+.+... .++. .+-....++.+.+.|+|||.+-...
T Consensus 206 g~d~~i~vris~~~~----~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~ 251 (327)
T cd02803 206 GPDFPVGVRLSADDF----VPGGLTLEEAIEIAKALEEAGVDALHVSGGS 251 (327)
T ss_pred CCCceEEEEechhcc----CCCCCCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 5667776665321 1111 1222456788999999999986543
No 75
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=56.80 E-value=46 Score=32.33 Aligned_cols=102 Identities=18% Similarity=0.125 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCC-CCCccccCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccccC
Q 016207 106 SETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDL-KGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQ 184 (393)
Q Consensus 106 ~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~-~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Glw~~pg~~~c~ 184 (393)
+++.+++.|..+.+ .|.+ +.. .+.++ .|.. +|..-+. -.|++.|.++.++.|+.+-- +|
T Consensus 37 ~~~~~~~~A~~lk~-----~~~k-~~r-~~~~K-pRtsp~s~~g~g----~~gl~~l~~~~~~~Gl~~~t--~~------ 96 (260)
T TIGR01361 37 SEEQIMETARFVKE-----AGAK-ILR-GGAFK-PRTSPYSFQGLG----EEGLKLLRRAADEHGLPVVT--EV------ 96 (260)
T ss_pred CHHHHHHHHHHHHH-----HHHH-hcc-Cceec-CCCCCccccccH----HHHHHHHHHHHHHhCCCEEE--ee------
Confidence 78899999999854 4444 223 35555 3432 2222111 24899999999999998753 22
Q ss_pred CCCcccccHHhHHHHHHHcCCcEEEeecCCCCCCCccccchHHHHHHHhcCCCceeec
Q 016207 185 VRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYSL 242 (393)
Q Consensus 185 ~~pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~AL~~agr~i~~sl 242 (393)
|-...++.+.+. +|++|+=-.... -..+.+++.++|.||+++.
T Consensus 97 -------~d~~~~~~l~~~-~d~lkI~s~~~~-------n~~LL~~~a~~gkPVilk~ 139 (260)
T TIGR01361 97 -------MDPRDVEIVAEY-ADILQIGARNMQ-------NFELLKEVGKQGKPVLLKR 139 (260)
T ss_pred -------CChhhHHHHHhh-CCEEEECccccc-------CHHHHHHHhcCCCcEEEeC
Confidence 223456666777 899997543221 1346777778888888874
No 76
>PLN02361 alpha-amylase
Probab=56.14 E-value=77 Score=32.93 Aligned_cols=101 Identities=13% Similarity=0.075 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCcc-----ccCCCCCC--CHHHHHHHHHHcCCeEEEEee---
Q 016207 108 TIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLV-----PDTITFPS--GIKALADYVHGKGLKLGIYSD--- 177 (393)
Q Consensus 108 ~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~-----~d~~kFP~--Gl~~l~d~vh~~Gmk~Glw~~--- 177 (393)
..|.+.++.+ +++|+..|-|=--.... ...|.+. +| .+|.+ .++.|++.+|++||++=+=+-
T Consensus 29 ~~i~~kl~~l-----~~lG~t~iwl~P~~~~~--~~~GY~~~d~y~~~-~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH 100 (401)
T PLN02361 29 RNLEGKVPDL-----AKSGFTSAWLPPPSQSL--APEGYLPQNLYSLN-SAYGSEHLLKSLLRKMKQYNVRAMADIVINH 100 (401)
T ss_pred HHHHHHHHHH-----HHcCCCEEEeCCCCcCC--CCCCCCcccccccC-cccCCHHHHHHHHHHHHHcCCEEEEEEcccc
Confidence 6777888887 77888887664433221 1123332 34 45642 499999999999999643110
Q ss_pred -----C----------Cc---------ccc--------------------CCCCcccccHHhHHHHHHH-cCCcEEEeec
Q 016207 178 -----A----------GV---------FTC--------------------QVRPGSLFHEKDDAPLFAS-WGVDYLKYDN 212 (393)
Q Consensus 178 -----p----------g~---------~~c--------------------~~~pgs~~~~~~~~~~~~~-wGvdylK~D~ 212 (393)
+ +. ..| ..+|.+++++...++-+.+ .|||.+.+|+
T Consensus 101 ~~g~~~~~~~~y~~~~g~~~~wd~~~~~~~~~g~~~~~~~~~~~~lpDLd~~np~Vr~~l~~~~~wl~~~~GiDGfRlDa 180 (401)
T PLN02361 101 RVGTTQGHGGMYNRYDGIPLPWDEHAVTSCTGGLGNRSTGDNFNGVPNIDHTQHFVRKDIIGWLIWLRNDVGFQDFRFDF 180 (401)
T ss_pred ccCCCCCCCCCcccCCCCcCCCCccccccccCCCCCccCCCCCccCCccCCCCHHHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 0 00 001 1345566666666666664 8999999999
Q ss_pred CCCC
Q 016207 213 CFNL 216 (393)
Q Consensus 213 ~~~~ 216 (393)
...-
T Consensus 181 vk~~ 184 (401)
T PLN02361 181 AKGY 184 (401)
T ss_pred cccC
Confidence 8654
No 77
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=55.49 E-value=31 Score=33.13 Aligned_cols=73 Identities=18% Similarity=0.156 Sum_probs=46.6
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCcEEEeecCCCCCCCccccchHHHHH----HHh
Q 016207 158 IKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDA----LNE 233 (393)
Q Consensus 158 l~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~A----L~~ 233 (393)
.+.++.++|+.|+++.| +-+-. + ..-...+++..+|+||+|-..............+-++ ...
T Consensus 138 ~~~~l~~L~~~G~~ial--DDFGt---------G--~ssl~~L~~l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~ 204 (256)
T COG2200 138 ALALLRQLRELGVRIAL--DDFGT---------G--YSSLSYLKRLPPDILKIDRSFVRDLETDARDQAIVRAIVALAHK 204 (256)
T ss_pred HHHHHHHHHHCCCeEEE--ECCCC---------C--HHHHHHHhhCCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHH
Confidence 78899999999977655 33210 0 1246778899999999999766544332222333333 345
Q ss_pred cCCCceeecc
Q 016207 234 TGCSIFYSLC 243 (393)
Q Consensus 234 agr~i~~slc 243 (393)
.|-.++.+.+
T Consensus 205 l~~~vvaEGV 214 (256)
T COG2200 205 LGLTVVAEGV 214 (256)
T ss_pred CCCEEEEeec
Confidence 6677777654
No 78
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=55.45 E-value=25 Score=31.70 Aligned_cols=42 Identities=24% Similarity=0.180 Sum_probs=34.9
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCcEEEeec
Q 016207 158 IKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDN 212 (393)
Q Consensus 158 l~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~ 212 (393)
-+.+++.+|+.|+++-+|+... ....++.+.++|||+|=.|+
T Consensus 138 ~~~~v~~~~~~g~~v~~wtvn~-------------~~~~~~~l~~~Gvd~i~TD~ 179 (179)
T cd08555 138 DTELIASANKLGLLSRIWTVND-------------NNEIINKFLNLGVDGLITDF 179 (179)
T ss_pred CHHHHHHHHHCCCEEEEEeeCC-------------hHHHHHHHHHcCCCEEeCCC
Confidence 3789999999999999998653 13578889999999997774
No 79
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=55.25 E-value=1.1e+02 Score=29.81 Aligned_cols=102 Identities=15% Similarity=0.068 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCc-cccCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccccC
Q 016207 106 SETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQL-VPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQ 184 (393)
Q Consensus 106 ~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~-~~d~~kFP~Gl~~l~d~vh~~Gmk~Glw~~pg~~~c~ 184 (393)
+++.+++.|+.+ +++|+.++-= |=++ .|.+-... -+.. .|++.|.++.++.|+.+-- ++
T Consensus 27 s~e~~~~~a~~~-----~~~g~~~~r~--g~~k-pRts~~sf~G~G~----~gl~~L~~~~~~~Gl~~~T--ev------ 86 (250)
T PRK13397 27 SYDHIRLAASSA-----KKLGYNYFRG--GAYK-PRTSAASFQGLGL----QGIRYLHEVCQEFGLLSVS--EI------ 86 (250)
T ss_pred CHHHHHHHHHHH-----HHcCCCEEEe--cccC-CCCCCcccCCCCH----HHHHHHHHHHHHcCCCEEE--ee------
Confidence 789999999997 6667655432 2223 23321111 1111 2799999999999998742 22
Q ss_pred CCCcccccHHhHHHHHHHcCCcEEEeecCCCCCCCccccchHHHHHHHhcCCCceeec
Q 016207 185 VRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYSL 242 (393)
Q Consensus 185 ~~pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~AL~~agr~i~~sl 242 (393)
|....++.+.+ .+|.+|+=-..... ..+.+++.++|.|++++.
T Consensus 87 -------~d~~~v~~~~e-~vdilqIgs~~~~n-------~~LL~~va~tgkPVilk~ 129 (250)
T PRK13397 87 -------MSERQLEEAYD-YLDVIQVGARNMQN-------FEFLKTLSHIDKPILFKR 129 (250)
T ss_pred -------CCHHHHHHHHh-cCCEEEECcccccC-------HHHHHHHHccCCeEEEeC
Confidence 33456777778 59999985432211 457777778899998874
No 80
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=54.07 E-value=23 Score=34.38 Aligned_cols=73 Identities=19% Similarity=0.243 Sum_probs=49.8
Q ss_pred cccCceEEEeCCCcCCCCCCCCCCccccCC---C--CCCCHHHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHH
Q 016207 123 AELGYDHVNIDDCWSSPLRDLKGQLVPDTI---T--FPSGIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDA 197 (393)
Q Consensus 123 ~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~---k--FP~Gl~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~ 197 (393)
.++|.+.++|||-|..... ...+++ + .|. ++.++++++..|.+.++. .|.. .....
T Consensus 154 ~eaG~d~i~i~dp~~~~~~-----~~is~~~~~e~~~p~-~k~i~~~i~~~~~~~~lH------~cg~-------~~~~~ 214 (306)
T cd00465 154 IEAGAKALQIHEPAFSQIN-----SFLGPKMFKKFALPA-YKKVAEYKAAGEVPIVHH------SCYD-------AADLL 214 (306)
T ss_pred HHhCCCEEEEecccccccC-----CCCCHHHHHHHHHHH-HHHHHHHHhhcCCceEEE------ECCC-------HHHHH
Confidence 5679999999999976321 011111 1 233 788899988888877774 3421 13457
Q ss_pred HHHHHcCCcEEEeecCC
Q 016207 198 PLFASWGVDYLKYDNCF 214 (393)
Q Consensus 198 ~~~~~wGvdylK~D~~~ 214 (393)
..+.+.|+|.+-+|+..
T Consensus 215 ~~l~~~~~d~~~~d~~~ 231 (306)
T cd00465 215 EEMIQLGVDVISFDMTV 231 (306)
T ss_pred HHHHHhCcceEeccccc
Confidence 77889999999999874
No 81
>cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=54.02 E-value=28 Score=33.22 Aligned_cols=41 Identities=24% Similarity=0.405 Sum_probs=34.3
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCcEEEee
Q 016207 158 IKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYD 211 (393)
Q Consensus 158 l~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D 211 (393)
|+.+++.+|++|+++.+|..|.. ....+.+.++|+|+|=.|
T Consensus 187 l~~~v~~a~~~Gl~vr~Wtv~~~-------------~~~~~~l~~~GVd~I~TD 227 (228)
T cd08577 187 LKSIIDKAHARGKKVRFWGTPDR-------------PNVWKTLMELGVDLLNTD 227 (228)
T ss_pred HHHHHHHHHHCCCEEEEEccCCh-------------HHHHHHHHHhCCCEEecC
Confidence 78889999999999999987741 346788889999998766
No 82
>smart00642 Aamy Alpha-amylase domain.
Probab=53.28 E-value=49 Score=29.79 Aligned_cols=65 Identities=26% Similarity=0.331 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCC--CCCCCc-----cccCCCCC--CCHHHHHHHHHHcCCeEEEEe
Q 016207 106 SETIIKETADALVSTGLAELGYDHVNIDDCWSSPLR--DLKGQL-----VPDTITFP--SGIKALADYVHGKGLKLGIYS 176 (393)
Q Consensus 106 ~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~r--d~~G~~-----~~d~~kFP--~Gl~~l~d~vh~~Gmk~Glw~ 176 (393)
+-+.+.+.++.+ +++|++.|.|=--+..... ...|.. .+++ +|- +.++.|++.+|++||++-+=+
T Consensus 17 ~~~gi~~~l~yl-----~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~-~~Gt~~d~~~lv~~~h~~Gi~vilD~ 90 (166)
T smart00642 17 DLQGIIEKLDYL-----KDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDP-RFGTMEDFKELVDAAHARGIKVILDV 90 (166)
T ss_pred CHHHHHHHHHHH-----HHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCc-ccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 345667777777 7789988877332222110 111222 2232 332 359999999999999976533
No 83
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=53.07 E-value=63 Score=33.00 Aligned_cols=105 Identities=12% Similarity=0.148 Sum_probs=65.0
Q ss_pred CCCCHHHHHHHHHHHHH--cCCcccCceEEEeCCCc-----------CCCCCCCCCCccccCCCCCCCHHHHHHHHHHc-
Q 016207 103 CNISETIIKETADALVS--TGLAELGYDHVNIDDCW-----------SSPLRDLKGQLVPDTITFPSGIKALADYVHGK- 168 (393)
Q Consensus 103 ~~i~e~~i~~~ad~~~~--~gl~~~G~~~~~IDDGW-----------~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~- 168 (393)
..+|+++|.+.++.+++ ...+++|++-|.|=.+- .+...|.+|-=.-|..+| +..+++.|++.
T Consensus 132 ~~mt~~eI~~ii~~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf---~~eii~air~~v 208 (361)
T cd04747 132 REMTEADIDDVIAAFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRF---AAEVVKAIRAAV 208 (361)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHH---HHHHHHHHHHHc
Confidence 45888988888776544 23356899999887664 111235565444566677 67888999875
Q ss_pred C--CeEEEEeeCCccccC-CCCcccccH--HhHHHHHHHcCCcEEEee
Q 016207 169 G--LKLGIYSDAGVFTCQ-VRPGSLFHE--KDDAPLFASWGVDYLKYD 211 (393)
Q Consensus 169 G--mk~Glw~~pg~~~c~-~~pgs~~~~--~~~~~~~~~wGvdylK~D 211 (393)
| +.+|+=+.+.. .+. ..++..... ...++.+.+.|+|||-+-
T Consensus 209 G~d~~v~vRis~~~-~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs 255 (361)
T cd04747 209 GPDFPIILRFSQWK-QQDYTARLADTPDELEALLAPLVDAGVDIFHCS 255 (361)
T ss_pred CCCCeEEEEECccc-ccccccCCCCCHHHHHHHHHHHHHcCCCEEEec
Confidence 4 67888666521 111 112222322 234566788999998663
No 84
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=52.78 E-value=29 Score=33.82 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=35.1
Q ss_pred HHHHHHHHHc-CCeEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCcEEEeecC
Q 016207 159 KALADYVHGK-GLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNC 213 (393)
Q Consensus 159 ~~l~d~vh~~-Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~~ 213 (393)
+.+++.+|++ |+++-.|+-... .+++.+.+||||.|=-|+-
T Consensus 219 ~~~V~~~h~~~gl~V~~WTVN~~--------------~~~~~l~~~GVDgIiTD~P 260 (263)
T cd08580 219 PAAVDCFRRNSKVKIVLFGINTA--------------DDYRLAKCLGADAVMVDSP 260 (263)
T ss_pred HHHHHHHHhcCCcEEEEEEeCCH--------------HHHHHHHHcCCCEEEeCCc
Confidence 7889999999 999999986432 4788999999999998874
No 85
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=52.59 E-value=60 Score=29.32 Aligned_cols=87 Identities=15% Similarity=0.229 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHc--CCeEEEEeeCCcccc----CCCCcc-cccHHhHHHHHHHcCCcEEEeecCCCCCCC--ccccchHH
Q 016207 157 GIKALADYVHGK--GLKLGIYSDAGVFTC----QVRPGS-LFHEKDDAPLFASWGVDYLKYDNCFNLGIE--PKKRYPPM 227 (393)
Q Consensus 157 Gl~~l~d~vh~~--Gmk~Glw~~pg~~~c----~~~pgs-~~~~~~~~~~~~~wGvdylK~D~~~~~~~~--~~~~y~~m 227 (393)
.....+..++++ |+|+-+-+.-..... ...|.. ..+++..++.++++|+|.|=+|+-+..... ..+.|..+
T Consensus 50 ~~~~~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~l 129 (210)
T cd00598 50 PLKGALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITL 129 (210)
T ss_pred HHHHHHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHH
Confidence 356667778877 888766553221111 122322 345677788899999999999998765433 24566666
Q ss_pred HHHHHhc-CC-Cceeecc
Q 016207 228 RDALNET-GC-SIFYSLC 243 (393)
Q Consensus 228 ~~AL~~a-gr-~i~~slc 243 (393)
.+.|++. ++ ..++++.
T Consensus 130 l~~lr~~l~~~~~~ls~a 147 (210)
T cd00598 130 LRELRSALGAANYLLTIA 147 (210)
T ss_pred HHHHHHHhcccCcEEEEE
Confidence 6666543 22 4566654
No 86
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=52.45 E-value=85 Score=31.74 Aligned_cols=80 Identities=13% Similarity=0.126 Sum_probs=54.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccc
Q 016207 103 CNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFT 182 (393)
Q Consensus 103 ~~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Glw~~pg~~~ 182 (393)
..++.+.+++.++.+ .+.|...|.+= + |+.... |+ +..++++++++|+.+.|-++. .
T Consensus 44 ~~~~~e~~~~ii~~~-----~~~g~~~v~~~----G------GEPll~----~~-~~~il~~~~~~g~~~~i~TNG-~-- 100 (378)
T PRK05301 44 AELSTEEWIRVLREA-----RALGALQLHFS----G------GEPLLR----KD-LEELVAHARELGLYTNLITSG-V-- 100 (378)
T ss_pred CCCCHHHHHHHHHHH-----HHcCCcEEEEE----C------CccCCc----hh-HHHHHHHHHHcCCcEEEECCC-c--
Confidence 357889999999988 45566666552 1 334333 44 889999999999988775442 1
Q ss_pred cCCCCcccccH-HhHHHHHHHcCCcEEEeecCC
Q 016207 183 CQVRPGSLFHE-KDDAPLFASWGVDYLKYDNCF 214 (393)
Q Consensus 183 c~~~pgs~~~~-~~~~~~~~~wGvdylK~D~~~ 214 (393)
.+ +..++.+++.|++.|.+..-.
T Consensus 101 ---------ll~~~~~~~L~~~g~~~v~iSldg 124 (378)
T PRK05301 101 ---------GLTEARLAALKDAGLDHIQLSFQD 124 (378)
T ss_pred ---------cCCHHHHHHHHHcCCCEEEEEecC
Confidence 12 345677888888887766544
No 87
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=52.39 E-value=98 Score=30.94 Aligned_cols=81 Identities=17% Similarity=0.217 Sum_probs=55.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccc
Q 016207 103 CNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFT 182 (393)
Q Consensus 103 ~~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Glw~~pg~~~ 182 (393)
..++.+.+++.++.+ +++|+..|.+- + |+.... |+ +..++++++++|+.+.|-++ |..
T Consensus 35 ~~l~~e~~~~ii~~~-----~~~g~~~v~~~----G------GEPll~----~~-~~~ii~~~~~~g~~~~l~TN-G~l- 92 (358)
T TIGR02109 35 AELTTEEWTDVLTQA-----AELGVLQLHFS----G------GEPLAR----PD-LVELVAHARRLGLYTNLITS-GVG- 92 (358)
T ss_pred CCCCHHHHHHHHHHH-----HhcCCcEEEEe----C------cccccc----cc-HHHHHHHHHHcCCeEEEEeC-Ccc-
Confidence 357889999999988 45566666652 1 344443 33 88999999999999888544 321
Q ss_pred cCCCCcccccHHhHHHHHHHcCCcEEEeecCC
Q 016207 183 CQVRPGSLFHEKDDAPLFASWGVDYLKYDNCF 214 (393)
Q Consensus 183 c~~~pgs~~~~~~~~~~~~~wGvdylK~D~~~ 214 (393)
--+..++.+++.|++.|.+.--.
T Consensus 93 ---------l~~e~~~~L~~~g~~~v~iSldg 115 (358)
T TIGR02109 93 ---------LTEARLDALADAGLDHVQLSFQG 115 (358)
T ss_pred ---------CCHHHHHHHHhCCCCEEEEeCcC
Confidence 01345677888888887766543
No 88
>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4.
Probab=52.24 E-value=28 Score=33.60 Aligned_cols=41 Identities=17% Similarity=0.174 Sum_probs=34.6
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCcEEEeecC
Q 016207 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNC 213 (393)
Q Consensus 159 ~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~~ 213 (393)
+.+++.+|++|+++.+|+--.. ..++.+.+||||+|=.|+-
T Consensus 221 ~~~v~~~~~~G~~v~vWTVNd~--------------~~~~~l~~~GVdgIiTD~P 261 (264)
T cd08575 221 PNLFDHLRKRGIQVYLWVLNDE--------------EDFEEAFDLGADGVMTDSP 261 (264)
T ss_pred HHHHHHHHhcCCcEEEEEECCH--------------HHHHHHHhcCCCEEEeCCc
Confidence 6899999999999999985422 4688899999999998874
No 89
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=52.01 E-value=64 Score=32.23 Aligned_cols=102 Identities=23% Similarity=0.272 Sum_probs=61.9
Q ss_pred CCCCHHHHHHHHHHHHH--cCCcccCceEEEeCCC--c---------CCCCCCCCCCccccCCCCCCCHHHHHHHHHHc-
Q 016207 103 CNISETIIKETADALVS--TGLAELGYDHVNIDDC--W---------SSPLRDLKGQLVPDTITFPSGIKALADYVHGK- 168 (393)
Q Consensus 103 ~~i~e~~i~~~ad~~~~--~gl~~~G~~~~~IDDG--W---------~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~- 168 (393)
..+|+++|.+.++.+++ ...+++|++-|.|-.+ + .....|.+|--.-+.-+| +..+++.|++.
T Consensus 142 ~~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf---~~eiv~aIR~~v 218 (336)
T cd02932 142 RELTREEIAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRF---LLEVVDAVRAVW 218 (336)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHH---HHHHHHHHHHHc
Confidence 46899999888776554 2345689999988764 3 222344555434444455 56788888754
Q ss_pred --CCeEEEEeeCCccccCCCCcccccH--HhHHHHHHHcCCcEEEee
Q 016207 169 --GLKLGIYSDAGVFTCQVRPGSLFHE--KDDAPLFASWGVDYLKYD 211 (393)
Q Consensus 169 --Gmk~Glw~~pg~~~c~~~pgs~~~~--~~~~~~~~~wGvdylK~D 211 (393)
++.+++=+.+.. .+ ++..... ...++.+.+.|+|||-+-
T Consensus 219 G~d~~v~vri~~~~-~~---~~g~~~~e~~~ia~~Le~~gvd~iev~ 261 (336)
T cd02932 219 PEDKPLFVRISATD-WV---EGGWDLEDSVELAKALKELGVDLIDVS 261 (336)
T ss_pred CCCceEEEEEcccc-cC---CCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 455666544421 11 1212222 345678889999999863
No 90
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=51.97 E-value=2.1e+02 Score=28.84 Aligned_cols=121 Identities=14% Similarity=0.090 Sum_probs=68.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcccCceEEEe--CCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHH--HcCCeEEEEee
Q 016207 102 ACNISETIIKETADALVSTGLAELGYDHVNI--DDCWSSPLRDLKGQLVPDTITFPSGIKALADYVH--GKGLKLGIYSD 177 (393)
Q Consensus 102 ~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~I--DDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh--~~Gmk~Glw~~ 177 (393)
...++.+.+++.++.+ .++|+++|.+ .+|+... ....++..+|+ ...++.++ .++.++..++.
T Consensus 19 ~~~f~~~~~~~i~~~L-----~~aGv~~IEvg~~~g~g~~------s~~~g~~~~~~--~e~i~~~~~~~~~~~~~~ll~ 85 (337)
T PRK08195 19 RHQYTLEQVRAIARAL-----DAAGVPVIEVTHGDGLGGS------SFNYGFGAHTD--EEYIEAAAEVVKQAKIAALLL 85 (337)
T ss_pred CCccCHHHHHHHHHHH-----HHcCCCEEEeecCCCCCCc------cccCCCCCCCH--HHHHHHHHHhCCCCEEEEEec
Confidence 4568999999999999 6678888877 3455432 12223344443 33334442 24578887777
Q ss_pred CCccccCCCCcccccHHhHHHHHHHcCCcEEEeec-CCCCCCCccccchHHHHHHHhcCCCceeeccCCCCCChh
Q 016207 178 AGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDN-CFNLGIEPKKRYPPMRDALNETGCSIFYSLCEWGVDDPA 251 (393)
Q Consensus 178 pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~-~~~~~~~~~~~y~~m~~AL~~agr~i~~slc~~g~~~P~ 251 (393)
|+.. .+ .+++...+.|+|.|.+=+ |... +......+..++.|-.+.+.++..+..+|.
T Consensus 86 pg~~----------~~-~dl~~a~~~gvd~iri~~~~~e~-----~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e 144 (337)
T PRK08195 86 PGIG----------TV-DDLKMAYDAGVRVVRVATHCTEA-----DVSEQHIGLARELGMDTVGFLMMSHMAPPE 144 (337)
T ss_pred cCcc----------cH-HHHHHHHHcCCCEEEEEEecchH-----HHHHHHHHHHHHCCCeEEEEEEeccCCCHH
Confidence 7541 12 456777788999887643 2211 112233333445666666666554444443
No 91
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=51.55 E-value=32 Score=31.44 Aligned_cols=74 Identities=18% Similarity=0.199 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCcEEEeecCCCCCCCccccch----HHHHHHH
Q 016207 157 GIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYP----PMRDALN 232 (393)
Q Consensus 157 Gl~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~----~m~~AL~ 232 (393)
.++.+...+++.|++++| +- ++.-...+..+.++.+||||+|............+. .+....+
T Consensus 133 ~~~~~~~~l~~~G~~l~l--d~-----------~g~~~~~~~~l~~~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~ 199 (240)
T cd01948 133 EALATLRRLRALGVRIAL--DD-----------FGTGYSSLSYLKRLPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAH 199 (240)
T ss_pred HHHHHHHHHHHCCCeEEE--eC-----------CCCcHhhHHHHHhCCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHH
Confidence 378999999999999887 11 112234567788999999999986543322212222 3333334
Q ss_pred hcCCCceeecc
Q 016207 233 ETGCSIFYSLC 243 (393)
Q Consensus 233 ~agr~i~~slc 243 (393)
..|-+++.+..
T Consensus 200 ~~~~~via~gV 210 (240)
T cd01948 200 SLGLKVVAEGV 210 (240)
T ss_pred HCCCeEEEEec
Confidence 55667777643
No 92
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=51.31 E-value=19 Score=34.08 Aligned_cols=123 Identities=20% Similarity=0.251 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCc-----cccCCCCC--CCHHHHHHHHHHcCCeEEEEeeCC
Q 016207 107 ETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQL-----VPDTITFP--SGIKALADYVHGKGLKLGIYSDAG 179 (393)
Q Consensus 107 e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~-----~~d~~kFP--~Gl~~l~d~vh~~Gmk~Glw~~pg 179 (393)
-+.|.+.+|.+ +++|++.|.|=--+.... ...|.. .+|+ +|- ..++.|++.+|++||++-+=+.+.
T Consensus 3 ~~gi~~kLdyl-----~~lGv~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~-~~Gt~~d~~~Lv~~~h~~gi~VilD~V~N 75 (316)
T PF00128_consen 3 FRGIIDKLDYL-----KDLGVNAIWLSPIFESPN-GYHGYDPSDYYAVDP-RFGTMEDFKELVDAAHKRGIKVILDVVPN 75 (316)
T ss_dssp HHHHHHTHHHH-----HHHTESEEEESS-EESSS-STTTTSESEEEEEST-TTBHHHHHHHHHHHHHHTTCEEEEEEETS
T ss_pred HHHHHHhhHHH-----HHcCCCceeccccccccc-ccccccceeeecccc-ccchhhhhhhhhhccccccceEEEeeecc
Confidence 35677788888 788998888754443311 222332 3443 552 248999999999999987654331
Q ss_pred c-----------------------c----cc----------------------------------CCCCcccccHHhHHH
Q 016207 180 V-----------------------F----TC----------------------------------QVRPGSLFHEKDDAP 198 (393)
Q Consensus 180 ~-----------------------~----~c----------------------------------~~~pgs~~~~~~~~~ 198 (393)
. . .+ ..+|.++.++...++
T Consensus 76 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~i~~~~~ 155 (316)
T PF00128_consen 76 HTSDDHPWFQDSLNYFDNPYSDYYYWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSDLPDLNYENPEVREYIIDVLK 155 (316)
T ss_dssp EEETTSHHHHHHHTHTTSTTGTTBEEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTTSEEBETTSHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccceeecccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhccccc
Confidence 0 0 00 012334555655667
Q ss_pred HHHHcCCcEEEeecCCCCCCCccccchHHHHHHHhcCCCce
Q 016207 199 LFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIF 239 (393)
Q Consensus 199 ~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~AL~~agr~i~ 239 (393)
.+.+.|||.+.+|....-.. +....+.++++...+.++
T Consensus 156 ~w~~~giDGfR~D~~~~~~~---~~~~~~~~~~~~~~~~~~ 193 (316)
T PF00128_consen 156 FWIEEGIDGFRLDAAKHIPK---EFWKEFRDEVKEEKPDFF 193 (316)
T ss_dssp HHHHTTESEEEETTGGGSSH---HHHHHHHHHHHHHHTTSE
T ss_pred chhhceEeEEEEccccccch---hhHHHHhhhhhhhccccc
Confidence 77788999999999765332 344566666655444433
No 93
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=51.20 E-value=38 Score=30.95 Aligned_cols=72 Identities=14% Similarity=0.176 Sum_probs=44.5
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCcEEEeecCCCCCCCccc----cchHHHHHHHh
Q 016207 158 IKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKK----RYPPMRDALNE 233 (393)
Q Consensus 158 l~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~----~y~~m~~AL~~ 233 (393)
....++.+++.|+++.| +- ++.-...+..+.+..+||||+|........... ....+....+.
T Consensus 135 ~~~~i~~l~~~G~~ial--dd-----------fg~~~~~~~~l~~l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~ 201 (241)
T smart00052 135 AVATLQRLRELGVRIAL--DD-----------FGTGYSSLSYLKRLPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQK 201 (241)
T ss_pred HHHHHHHHHHCCCEEEE--eC-----------CCCcHHHHHHHHhCCCCeEEECHHHHhhhccChhHHHHHHHHHHHHHH
Confidence 55888999999999876 21 111123467788899999999986543322111 22334444455
Q ss_pred cCCCceeec
Q 016207 234 TGCSIFYSL 242 (393)
Q Consensus 234 agr~i~~sl 242 (393)
.|-+++.+.
T Consensus 202 ~~~~via~g 210 (241)
T smart00052 202 LGLQVVAEG 210 (241)
T ss_pred CCCeEEEec
Confidence 677777763
No 94
>PRK03705 glycogen debranching enzyme; Provisional
Probab=51.11 E-value=70 Score=35.45 Aligned_cols=60 Identities=17% Similarity=0.208 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHcCCeEEEEeeC---------C--------------------c----ccc-----CCCCcccccHHhHHH
Q 016207 157 GIKALADYVHGKGLKLGIYSDA---------G--------------------V----FTC-----QVRPGSLFHEKDDAP 198 (393)
Q Consensus 157 Gl~~l~d~vh~~Gmk~Glw~~p---------g--------------------~----~~c-----~~~pgs~~~~~~~~~ 198 (393)
.+|.|++.+|++||++-|=+-. + . ..| ..+|.+..|+...++
T Consensus 243 efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid~l~ 322 (658)
T PRK03705 243 EFRDAVKALHKAGIEVILDVVFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAIDCLR 322 (658)
T ss_pred HHHHHHHHHHHCCCEEEEEEcccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHHHHH
Confidence 3999999999999996542211 0 0 112 135667777766666
Q ss_pred HHH-HcCCcEEEeecCCCC
Q 016207 199 LFA-SWGVDYLKYDNCFNL 216 (393)
Q Consensus 199 ~~~-~wGvdylK~D~~~~~ 216 (393)
.+. ++|||.+.+|-...-
T Consensus 323 ~W~~e~gVDGFRfD~a~~l 341 (658)
T PRK03705 323 YWVETCHVDGFRFDLATVL 341 (658)
T ss_pred HHHHHhCCCEEEEEcHhhh
Confidence 655 699999999986543
No 95
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=50.54 E-value=24 Score=34.17 Aligned_cols=42 Identities=26% Similarity=0.385 Sum_probs=33.1
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCcEEEeec
Q 016207 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDN 212 (393)
Q Consensus 159 ~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~ 212 (393)
+.+++.+|+.|+++.+|+..-. -...++.+.++|||+|=.|+
T Consensus 240 ~~~v~~~~~~Gl~v~vWTv~~n------------~~~~~~~l~~~GVdgIiTD~ 281 (282)
T cd08605 240 PTAVSLVKASGLELGTYGKLNN------------DAEAVERQADLGVDGVIVDH 281 (282)
T ss_pred cHHHHHHHHcCcEEEEeCCCCC------------CHHHHHHHHHcCCCEEEeCC
Confidence 5789999999999999975110 02467889999999998886
No 96
>PRK08227 autoinducer 2 aldolase; Validated
Probab=50.40 E-value=62 Score=31.73 Aligned_cols=71 Identities=13% Similarity=-0.055 Sum_probs=51.8
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCcEEEeecCCCCCCCccccchHHHHHHHhcCCC
Q 016207 158 IKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCS 237 (393)
Q Consensus 158 l~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~AL~~agr~ 237 (393)
+..+++..|+.||-+-+|+..|.. .....+++...++.=+|.|-|.||..++. ..|.++.+++..|
T Consensus 129 l~~v~~ea~~~G~Plla~~prG~~----~~~~~~~ia~aaRiaaELGADiVK~~y~~----------~~f~~vv~a~~vP 194 (264)
T PRK08227 129 IIQLVDAGLRYGMPVMAVTAVGKD----MVRDARYFSLATRIAAEMGAQIIKTYYVE----------EGFERITAGCPVP 194 (264)
T ss_pred HHHHHHHHHHhCCcEEEEecCCCC----cCchHHHHHHHHHHHHHHcCCEEecCCCH----------HHHHHHHHcCCCc
Confidence 788899999999987777644431 11123366777788889999999999972 4677777777778
Q ss_pred ceeec
Q 016207 238 IFYSL 242 (393)
Q Consensus 238 i~~sl 242 (393)
+++..
T Consensus 195 VviaG 199 (264)
T PRK08227 195 IVIAG 199 (264)
T ss_pred EEEeC
Confidence 87763
No 97
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=50.38 E-value=91 Score=30.20 Aligned_cols=107 Identities=17% Similarity=0.182 Sum_probs=66.8
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHH-cCCeEEEEeeCCccc
Q 016207 104 NISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHG-KGLKLGIYSDAGVFT 182 (393)
Q Consensus 104 ~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~-~Gmk~Glw~~pg~~~ 182 (393)
+.|++.+++.+..|. .-||+-+.|-.| .|+.|+.-.+ || +...+++++ .|+++-
T Consensus 38 ~vt~~~l~k~~~el~-----kkGy~g~llSGG-----m~srg~VPl~--kf----~d~lK~lke~~~l~in--------- 92 (275)
T COG1856 38 KVTTKSLLKRCMELE-----KKGYEGCLLSGG-----MDSRGKVPLW--KF----KDELKALKERTGLLIN--------- 92 (275)
T ss_pred ccchHHHHHHHHHHH-----hcCceeEEEeCC-----cCCCCCccHH--HH----HHHHHHHHHhhCeEEE---------
Confidence 467788888888884 458898998543 3444543322 23 333334432 244432
Q ss_pred cCCCCcccccHHhHHHHHHHcCCcEEEeecCCCCCC--------CccccchHHHHHHHhcCCCce
Q 016207 183 CQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGI--------EPKKRYPPMRDALNETGCSIF 239 (393)
Q Consensus 183 c~~~pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~--------~~~~~y~~m~~AL~~agr~i~ 239 (393)
| |-|..+ +.+++.|++-++|-+-+||...... ...+.|.+-.+.|...|-.++
T Consensus 93 a--HvGfvd--E~~~eklk~~~vdvvsLDfvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvv 153 (275)
T COG1856 93 A--HVGFVD--ESDLEKLKEELVDVVSLDFVGDNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVV 153 (275)
T ss_pred E--Eeeecc--HHHHHHHHHhcCcEEEEeecCChHHHHHHHcCCccHHHHHHHHHHHHHcCceec
Confidence 1 333333 6789999999999999999876431 235667776777777775443
No 98
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=50.22 E-value=50 Score=32.70 Aligned_cols=87 Identities=14% Similarity=0.014 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHcCCeEEEEeeCCcc-ccCCCC-cccccHHhHHHHHHHcCCcEEEeecCCCCCCC----ccccchHHHHH
Q 016207 157 GIKALADYVHGKGLKLGIYSDAGVF-TCQVRP-GSLFHEKDDAPLFASWGVDYLKYDNCFNLGIE----PKKRYPPMRDA 230 (393)
Q Consensus 157 Gl~~l~d~vh~~Gmk~Glw~~pg~~-~c~~~p-gs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~----~~~~y~~m~~A 230 (393)
.++.-++.+|++|+|+-|-+--... .....+ ....+.+...+.++++|+|.|=+|+-+..... ..+.|..+.++
T Consensus 61 ~~~~~i~~~q~~G~KVllSiGG~~~~~~~~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E~~~~~~~~~~~~~~~~~~lk~ 140 (312)
T cd02871 61 EFKADIKALQAKGKKVLISIGGANGHVDLNHTAQEDNFVDSIVAIIKEYGFDGLDIDLESGSNPLNATPVITNLISALKQ 140 (312)
T ss_pred HHHHHHHHHHHCCCEEEEEEeCCCCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEecccCCccCCcHHHHHHHHHHHHH
Confidence 4778888999999997765532110 001112 23445677778899999999999997754321 12344455555
Q ss_pred HHh-cCCCceeecc
Q 016207 231 LNE-TGCSIFYSLC 243 (393)
Q Consensus 231 L~~-agr~i~~slc 243 (393)
|++ .+++.+++..
T Consensus 141 lr~~~~~~~~lT~A 154 (312)
T cd02871 141 LKDHYGPNFILTMA 154 (312)
T ss_pred HHHHcCCCeEEEEC
Confidence 543 3556677653
No 99
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=50.03 E-value=23 Score=33.79 Aligned_cols=85 Identities=16% Similarity=0.102 Sum_probs=51.7
Q ss_pred CCCCccccCCCCCCCHHHHHHHHHHcCCeEEEEeeCCc----cccCCCCccc-ccHHhHHHHHHHcCCcEEEeecCCCCC
Q 016207 143 LKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGV----FTCQVRPGSL-FHEKDDAPLFASWGVDYLKYDNCFNLG 217 (393)
Q Consensus 143 ~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Glw~~pg~----~~c~~~pgs~-~~~~~~~~~~~~wGvdylK~D~~~~~~ 217 (393)
.+|.+.... -+..+..+.+.+|++|+|+-+-+.-+. ......|..+ .+++..++.++++|+|.|=+|+-+...
T Consensus 35 ~~G~l~~~~--~~~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~~lv~~~~~~~~DGIdiDwE~~~~ 112 (253)
T cd06545 35 ANGTLNANP--VRSELNSVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVDKIINYVVSYNLDGIDVDLEGPDV 112 (253)
T ss_pred CCCeEEecC--cHHHHHHHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHHHHHHHHHHhCCCceeEEeeccCc
Confidence 345554432 123477888999999999765443211 1112234333 356778888999999999999976543
Q ss_pred CCccccchHHHHHH
Q 016207 218 IEPKKRYPPMRDAL 231 (393)
Q Consensus 218 ~~~~~~y~~m~~AL 231 (393)
. .+.|..+.+.|
T Consensus 113 ~--~~~~~~fv~~L 124 (253)
T cd06545 113 T--FGDYLVFIRAL 124 (253)
T ss_pred c--HhHHHHHHHHH
Confidence 2 34555444444
No 100
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=49.41 E-value=2.9e+02 Score=27.82 Aligned_cols=87 Identities=14% Similarity=0.132 Sum_probs=52.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcccCceEEEe--CCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHH-cCCeEEEEeeC
Q 016207 102 ACNISETIIKETADALVSTGLAELGYDHVNI--DDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHG-KGLKLGIYSDA 178 (393)
Q Consensus 102 ~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~I--DDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~-~Gmk~Glw~~p 178 (393)
...++.+.+++.++.+ .++|+++|-+ -+|+... ........+|+ +..+..-+.. +..++..++.|
T Consensus 18 ~~~f~~~~~~~ia~~L-----d~aGV~~IEvg~g~gl~g~------s~~~G~~~~~~-~e~i~~~~~~~~~~~~~~ll~p 85 (333)
T TIGR03217 18 RHQFTIEQVRAIAAAL-----DEAGVDAIEVTHGDGLGGS------SFNYGFSAHTD-LEYIEAAADVVKRAKVAVLLLP 85 (333)
T ss_pred CCcCCHHHHHHHHHHH-----HHcCCCEEEEecCCCCCCc------cccCCCCCCCh-HHHHHHHHHhCCCCEEEEEecc
Confidence 4578999999999999 6678888877 2343321 12223344554 4433333222 34788888887
Q ss_pred CccccCCCCcccccHHhHHHHHHHcCCcEEEee
Q 016207 179 GVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYD 211 (393)
Q Consensus 179 g~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D 211 (393)
|.. . ..+++...+.|+|.|.+=
T Consensus 86 g~~----------~-~~dl~~a~~~gvd~iri~ 107 (333)
T TIGR03217 86 GIG----------T-VHDLKAAYDAGARTVRVA 107 (333)
T ss_pred Ccc----------C-HHHHHHHHHCCCCEEEEE
Confidence 641 1 234566667788877753
No 101
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=48.61 E-value=56 Score=31.52 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=29.5
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCcEEEeecCC
Q 016207 158 IKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCF 214 (393)
Q Consensus 158 l~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~~~ 214 (393)
.+.|.+|++++|+.|-. .| |-...++.+.+.|++++|+=-..
T Consensus 58 ~~~L~~~~~~~gi~f~s--tp-------------fd~~s~d~l~~~~~~~~KIaS~d 99 (241)
T PF03102_consen 58 HKELFEYCKELGIDFFS--TP-------------FDEESVDFLEELGVPAYKIASGD 99 (241)
T ss_dssp HHHHHHHHHHTT-EEEE--EE--------------SHHHHHHHHHHT-SEEEE-GGG
T ss_pred HHHHHHHHHHcCCEEEE--CC-------------CCHHHHHHHHHcCCCEEEecccc
Confidence 79999999999998852 33 22356777889999999986544
No 102
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=48.43 E-value=62 Score=36.77 Aligned_cols=70 Identities=17% Similarity=0.186 Sum_probs=47.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCC----CCC--CCHHHHHHHHHHcCCeEEEEe
Q 016207 103 CNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTI----TFP--SGIKALADYVHGKGLKLGIYS 176 (393)
Q Consensus 103 ~~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~----kFP--~Gl~~l~d~vh~~Gmk~Glw~ 176 (393)
.+.|-+.+.+.++.+ +++|++.+.|=--+........|....|.. .|- .+++.|++.+|++||++-+=+
T Consensus 11 ~~~tf~~~~~~L~YL-----~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDi 85 (825)
T TIGR02401 11 AGFTFDDAAALLPYL-----KSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDI 85 (825)
T ss_pred CCCCHHHHHHhhHHH-----HHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 467888999999999 788998887755444322222344433322 332 359999999999999987644
Q ss_pred e
Q 016207 177 D 177 (393)
Q Consensus 177 ~ 177 (393)
-
T Consensus 86 V 86 (825)
T TIGR02401 86 V 86 (825)
T ss_pred c
Confidence 3
No 103
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=47.40 E-value=55 Score=34.47 Aligned_cols=46 Identities=15% Similarity=0.056 Sum_probs=29.4
Q ss_pred CcccccHHhHHHHHHH-cCCcEEEeecCCCCCCCccccchHHHHHHHhcC
Q 016207 187 PGSLFHEKDDAPLFAS-WGVDYLKYDNCFNLGIEPKKRYPPMRDALNETG 235 (393)
Q Consensus 187 pgs~~~~~~~~~~~~~-wGvdylK~D~~~~~~~~~~~~y~~m~~AL~~ag 235 (393)
|.+++++...++.+.+ .|||.+.+|....-.. +....+.+++++..
T Consensus 208 p~V~~~l~~~~~~w~~~~giDGfRlDavk~v~~---~f~~~~~~~~~~~~ 254 (479)
T PRK09441 208 PEVREELKYWAKWYMETTGFDGFRLDAVKHIDA---WFIKEWIEHVREVA 254 (479)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEhhhcCCCH---HHHHHHHHHHHHhc
Confidence 4445556556666665 9999999998765432 23446667776544
No 104
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=47.27 E-value=42 Score=31.55 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCcEEEeecCC
Q 016207 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCF 214 (393)
Q Consensus 159 ~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~~~ 214 (393)
+.+++.+|++|+++.+|+--. ...++.+.++|||.|=-|+..
T Consensus 195 ~~~v~~~~~~Gl~v~vwTVn~--------------~~~~~~l~~~GVdgiiTD~~~ 236 (237)
T cd08583 195 DKLIEKLNKAGIYVYVYTIND--------------LKDAQEYKKLGVYGIYTDFLT 236 (237)
T ss_pred HHHHHHHHHCCCEEEEEeCCC--------------HHHHHHHHHcCCCEEEeCCCC
Confidence 789999999999999997432 247889999999999988753
No 105
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=47.20 E-value=95 Score=34.68 Aligned_cols=60 Identities=22% Similarity=0.294 Sum_probs=41.2
Q ss_pred HHHHHHHHHHcCCeEEEEe----eC-----Cc------------------------ccc-----CCCCcccccHHhHHHH
Q 016207 158 IKALADYVHGKGLKLGIYS----DA-----GV------------------------FTC-----QVRPGSLFHEKDDAPL 199 (393)
Q Consensus 158 l~~l~d~vh~~Gmk~Glw~----~p-----g~------------------------~~c-----~~~pgs~~~~~~~~~~ 199 (393)
+|.|++.+|+.|+++-|=+ .. |. ..| ..+|-++.++-...+.
T Consensus 267 fK~mV~~lHkaGI~VILDVVfNHTae~~~~g~t~~f~~id~~~Yyr~~~dg~~~N~TGcGNtln~~hpmvrk~ivDsLrY 346 (697)
T COG1523 267 FKDMVKALHKAGIEVILDVVFNHTAEGNELGPTLSFRGIDPNYYYRLDPDGYYSNGTGCGNTLNTEHPMVRKLIVDSLRY 346 (697)
T ss_pred HHHHHHHHHHcCCEEEEEEeccCcccccCcCcccccccCCcCceEEECCCCCeecCCccCcccccCChHHHHHHHHHHHH
Confidence 7999999999999987533 11 10 123 2356666666555666
Q ss_pred H-HHcCCcEEEeecCCCCC
Q 016207 200 F-ASWGVDYLKYDNCFNLG 217 (393)
Q Consensus 200 ~-~~wGvdylK~D~~~~~~ 217 (393)
+ .|+.||.+..|-...-+
T Consensus 347 Wv~e~hVDGFRFDLa~~l~ 365 (697)
T COG1523 347 WVEEYHVDGFRFDLAGVLG 365 (697)
T ss_pred HHHHhCCCceeecchhhcc
Confidence 5 48999999999976543
No 106
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=46.83 E-value=50 Score=32.84 Aligned_cols=87 Identities=21% Similarity=0.070 Sum_probs=56.0
Q ss_pred cccCceEEEeCCCcCCCCCCCCCCccccCC---C--CCCCHHHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHH
Q 016207 123 AELGYDHVNIDDCWSSPLRDLKGQLVPDTI---T--FPSGIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDA 197 (393)
Q Consensus 123 ~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~---k--FP~Gl~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~ 197 (393)
.+.|.+.++++|.|... + - .+++ + .|. ++.+++.+|+.|-.+++++... .....
T Consensus 190 ~~~Gad~I~i~dp~a~~--~---~--lsp~~f~e~~~p~-~k~i~~~i~~~g~~~ilH~CG~-------------~~~~~ 248 (340)
T TIGR01463 190 VEAGADVIAIADPFASS--D---L--ISPETYKEFGLPY-QKRLFAYIKEIGGITVLHICGF-------------TQPIL 248 (340)
T ss_pred HHcCCCEEEecCCccCc--c---c--cCHHHHHHHHHHH-HHHHHHHHHhcCCceEEEECCC-------------chhhH
Confidence 57799999999988541 1 1 1112 1 244 8999999999887777644321 12346
Q ss_pred HHHHHcCCcEEEeecCCCCCCCccccchHHHHHHHhcCCCceee
Q 016207 198 PLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYS 241 (393)
Q Consensus 198 ~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~AL~~agr~i~~s 241 (393)
..+.+.|+|-+-+|++.. +.++-+..|.++.+.
T Consensus 249 ~~l~~~g~d~ls~d~~~~-----------l~~~~~~~g~~~~i~ 281 (340)
T TIGR01463 249 RDIANNGCFGFSVDMKPG-----------MDHAKRVIGGQASLV 281 (340)
T ss_pred HHHHHhCCCEEeecCCCC-----------HHHHHHHcCCceEEE
Confidence 678889999988887632 344555567665543
No 107
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=46.21 E-value=71 Score=36.59 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=47.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCcc-----ccCCCCC--CCHHHHHHHHHHcCCeEEE
Q 016207 102 ACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLV-----PDTITFP--SGIKALADYVHGKGLKLGI 174 (393)
Q Consensus 102 ~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~-----~d~~kFP--~Gl~~l~d~vh~~Gmk~Gl 174 (393)
..+.+-+.+.+.++.+ +++|++.+.|=--+........|... +|+ .|. ++++.|++.+|++||++-+
T Consensus 14 ~~~~tf~~~~~~l~YL-----~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp-~lGt~e~f~~Lv~aah~~Gi~VIl 87 (879)
T PRK14511 14 HAGFTFDDAAELVPYF-----ADLGVSHLYLSPILAARPGSTHGYDVVDHTRINP-ELGGEEGLRRLAAALRAHGMGLIL 87 (879)
T ss_pred CCCCCHHHHHHHhHHH-----HHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCC-CCCCHHHHHHHHHHHHHCCCEEEE
Confidence 3478889999999999 78899888775444331112224333 332 232 3699999999999999776
Q ss_pred EeeC
Q 016207 175 YSDA 178 (393)
Q Consensus 175 w~~p 178 (393)
=+-|
T Consensus 88 DiV~ 91 (879)
T PRK14511 88 DIVP 91 (879)
T ss_pred Eecc
Confidence 5444
No 108
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=46.18 E-value=59 Score=33.25 Aligned_cols=86 Identities=23% Similarity=0.198 Sum_probs=56.0
Q ss_pred cccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcCC-eEEEEeeCCccccCCCCcccccHHhHHHHHH
Q 016207 123 AELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGL-KLGIYSDAGVFTCQVRPGSLFHEKDDAPLFA 201 (393)
Q Consensus 123 ~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gm-k~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~ 201 (393)
.++|.+-++|.|+|... -+. ...+.=.+|- ++.+++.+++.+- .+-|++.-+.. .....++
T Consensus 199 i~aGAdavqifDsW~g~-l~~---~~~~~f~~~~-~~~i~~~vk~~~~~~pii~f~~ga~-------------~~l~~m~ 260 (352)
T COG0407 199 IEAGADAVQIFDSWAGV-LSM---IDYDEFVLPY-MKRIVREVKEVKGGVPVIHFCKGAG-------------HLLEDMA 260 (352)
T ss_pred HHhCCCEEEeecccccc-CCc---ccHHHHhhhH-HHHHHHHHHHhCCCCcEEEECCCcH-------------HHHHHHH
Confidence 56788999999999663 111 1122223344 8999999998776 34555544331 2467788
Q ss_pred HcCCcEEEeecCCCCCCCccccchHHHHHHHhcCCC
Q 016207 202 SWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCS 237 (393)
Q Consensus 202 ~wGvdylK~D~~~~~~~~~~~~y~~m~~AL~~agr~ 237 (393)
++|+|.+-+|.-.. +.+|-+..+..
T Consensus 261 ~~g~d~l~vdw~v~-----------l~~a~~~~~~~ 285 (352)
T COG0407 261 KTGFDVLGVDWRVD-----------LKEAKKRLGDK 285 (352)
T ss_pred hcCCcEEeeccccC-----------HHHHHHHhCCC
Confidence 99999999888643 55555555555
No 109
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=45.95 E-value=80 Score=31.86 Aligned_cols=103 Identities=24% Similarity=0.291 Sum_probs=64.1
Q ss_pred CCCCHHHHHHHHHHHHH--cCCcccCceEEEeCCCc--------CC--CCC-CCCCCccccCCCCCCCHHHHHHHHHHc-
Q 016207 103 CNISETIIKETADALVS--TGLAELGYDHVNIDDCW--------SS--PLR-DLKGQLVPDTITFPSGIKALADYVHGK- 168 (393)
Q Consensus 103 ~~i~e~~i~~~ad~~~~--~gl~~~G~~~~~IDDGW--------~~--~~r-d~~G~~~~d~~kFP~Gl~~l~d~vh~~- 168 (393)
..+|+++|.+.++.+++ ...+++|++-|.|-.|- .. +.| |.+|-=.-|..+| +..+++.|++.
T Consensus 130 ~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf---~~eii~~ir~~~ 206 (337)
T PRK13523 130 VEMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRF---LREIIDAVKEVW 206 (337)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHH---HHHHHHHHHHhc
Confidence 46899999998876554 23457899999997772 11 123 4454223455666 56777888765
Q ss_pred CCeEEEEeeCCccccCCCCccccc--HHhHHHHHHHcCCcEEEeec
Q 016207 169 GLKLGIYSDAGVFTCQVRPGSLFH--EKDDAPLFASWGVDYLKYDN 212 (393)
Q Consensus 169 Gmk~Glw~~pg~~~c~~~pgs~~~--~~~~~~~~~~wGvdylK~D~ 212 (393)
.+.+|+=+.+... .++.... ....++.+.+.|+|||-+-.
T Consensus 207 ~~~v~vRis~~d~----~~~G~~~~e~~~i~~~l~~~gvD~i~vs~ 248 (337)
T PRK13523 207 DGPLFVRISASDY----HPGGLTVQDYVQYAKWMKEQGVDLIDVSS 248 (337)
T ss_pred CCCeEEEeccccc----CCCCCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 5666765554221 1221222 23456788899999998855
No 110
>COG3669 Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=45.79 E-value=33 Score=35.58 Aligned_cols=20 Identities=35% Similarity=0.710 Sum_probs=19.1
Q ss_pred HHHHHHHHHHcCCeEEEEee
Q 016207 158 IKALADYVHGKGLKLGIYSD 177 (393)
Q Consensus 158 l~~l~d~vh~~Gmk~Glw~~ 177 (393)
++.+++.+++.||.||||+.
T Consensus 103 vgela~Avr~qGL~FGvy~s 122 (430)
T COG3669 103 VGELAKAVREQGLRFGVYLS 122 (430)
T ss_pred HHHHHHHHHHcCCeeeEeec
Confidence 78999999999999999997
No 111
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=45.29 E-value=44 Score=31.85 Aligned_cols=42 Identities=24% Similarity=0.370 Sum_probs=34.7
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCcEEEeecCC
Q 016207 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCF 214 (393)
Q Consensus 159 ~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~~~ 214 (393)
+.+++.+|++|+++.+|+-.. ...++.+.++|||+|=.|.-.
T Consensus 199 ~~~v~~~~~~g~~v~~WTvn~--------------~~~~~~l~~~GVdgIiTD~p~ 240 (249)
T PRK09454 199 EARVAALKAAGLRILVYTVND--------------PARARELLRWGVDCICTDRID 240 (249)
T ss_pred HHHHHHHHHCCCEEEEEeCCC--------------HHHHHHHHHcCCCEEEeCChH
Confidence 689999999999999997432 236788999999999988753
No 112
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=44.78 E-value=25 Score=33.08 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=21.9
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCc
Q 016207 158 IKALADYVHGKGLKLGIYSDAGV 180 (393)
Q Consensus 158 l~~l~d~vh~~Gmk~Glw~~pg~ 180 (393)
...++++||++|||+|+=+.||+
T Consensus 101 ~~~lv~~ir~~Gmk~G~alkPgT 123 (224)
T KOG3111|consen 101 PAELVEKIREKGMKVGLALKPGT 123 (224)
T ss_pred HHHHHHHHHHcCCeeeEEeCCCC
Confidence 78999999999999999999986
No 113
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=44.53 E-value=38 Score=32.50 Aligned_cols=45 Identities=20% Similarity=0.330 Sum_probs=34.1
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCcEEEeecC
Q 016207 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNC 213 (393)
Q Consensus 159 ~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~~ 213 (393)
+.+++.+|++|+++.+|+ ++.. + --...++.+.++|||.|=.|+.
T Consensus 213 ~~~v~~~~~~Gl~v~~wT-~~~~-~--------n~~~~~~~l~~~GvdgiiTD~p 257 (265)
T cd08564 213 EEFVKKAHENGLKVMTYF-DEPV-N--------DNEEDYKVYLELGVDCICPNDP 257 (265)
T ss_pred HHHHHHHHHcCCEEEEec-CCCC-C--------CCHHHHHHHHHcCCCEEEcCCH
Confidence 688999999999999997 3210 1 1135677888999999988864
No 114
>cd08581 GDPD_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=43.84 E-value=38 Score=31.97 Aligned_cols=38 Identities=24% Similarity=0.207 Sum_probs=31.1
Q ss_pred HHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCcEEEeec
Q 016207 161 LADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDN 212 (393)
Q Consensus 161 l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~ 212 (393)
.++.+|+.|+++.+|+-... ..++.+.+||||+|=-|+
T Consensus 191 ~v~~~~~~G~~v~vWTVn~~--------------~~~~~l~~~GVdgiiTD~ 228 (229)
T cd08581 191 DTGDLWAGTWKWVIYEVNEP--------------AEALALAARGVALIETDN 228 (229)
T ss_pred hhHHHHhCCceEEEEEcCCH--------------HHHHHHHHhCCcEEEcCC
Confidence 46679999999999986532 467889999999998775
No 115
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=43.82 E-value=1.4e+02 Score=30.66 Aligned_cols=103 Identities=15% Similarity=0.085 Sum_probs=63.7
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCC-CCCCccccCCCCCCCHHHHHHHHHHcCCeEEEEeeCCcccc
Q 016207 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRD-LKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTC 183 (393)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd-~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Glw~~pg~~~c 183 (393)
-+++.+++.|..+ ++.|.+++- .|=++ .|. .++..-+. -.|++-|.+..++.|+.+- +++
T Consensus 112 Es~eq~l~~A~~l-----k~~g~~~~r--~g~~k-pRtsp~sf~G~g----~~gl~~L~~~~~e~Gl~~~--tev----- 172 (352)
T PRK13396 112 ENEEMIVETAKRV-----KAAGAKFLR--GGAYK-PRTSPYAFQGHG----ESALELLAAAREATGLGII--TEV----- 172 (352)
T ss_pred cCHHHHHHHHHHH-----HHcCCCEEE--eeeec-CCCCCcccCCch----HHHHHHHHHHHHHcCCcEE--Eee-----
Confidence 5899999999999 445665533 34444 232 22221111 1379999999999998874 222
Q ss_pred CCCCcccccHHhHHHHHHHcCCcEEEeecCCCCCCCccccchHHHHHHHhcCCCceeec
Q 016207 184 QVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYSL 242 (393)
Q Consensus 184 ~~~pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~AL~~agr~i~~sl 242 (393)
+-...++.+.+. +|++|+=-..... ..+.+++.++|.|++++.
T Consensus 173 --------~d~~~v~~~~~~-~d~lqIga~~~~n-------~~LL~~va~t~kPVllk~ 215 (352)
T PRK13396 173 --------MDAADLEKIAEV-ADVIQVGARNMQN-------FSLLKKVGAQDKPVLLKR 215 (352)
T ss_pred --------CCHHHHHHHHhh-CCeEEECcccccC-------HHHHHHHHccCCeEEEeC
Confidence 233466777787 8999985433221 234556666777777764
No 116
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=43.68 E-value=44 Score=31.20 Aligned_cols=40 Identities=13% Similarity=0.317 Sum_probs=33.0
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCcEEEeec
Q 016207 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDN 212 (393)
Q Consensus 159 ~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~ 212 (393)
+.+++.+|+.|+++.+|+--. ...++.+.++|||+|=.|+
T Consensus 190 ~~~i~~~~~~g~~v~~Wtvn~--------------~~~~~~~~~~GVdgi~TD~ 229 (230)
T cd08563 190 EEVVEELKKRGIPVRLWTVNE--------------EEDMKRLKDLGVDGIITNY 229 (230)
T ss_pred HHHHHHHHHCCCEEEEEecCC--------------HHHHHHHHHCCCCEEeCCC
Confidence 689999999999999998432 1467888899999998875
No 117
>PRK08508 biotin synthase; Provisional
Probab=43.66 E-value=77 Score=30.92 Aligned_cols=81 Identities=11% Similarity=-0.042 Sum_probs=52.8
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEe-CCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcCCeEEEEeeCCcccc
Q 016207 105 ISETIIKETADALVSTGLAELGYDHVNI-DDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTC 183 (393)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~I-DDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Glw~~pg~~~c 183 (393)
++.++|.+.|..+. +.|+..|.+ ++|= .. +...|. =+..+++.|++.+..+.++...|..
T Consensus 40 ~s~eeI~~~a~~a~-----~~g~~~~~lv~sg~-~~----------~~~~~e-~~~ei~~~ik~~~p~l~i~~s~G~~-- 100 (279)
T PRK08508 40 KDIEQIVQEAKMAK-----ANGALGFCLVTSGR-GL----------DDKKLE-YVAEAAKAVKKEVPGLHLIACNGTA-- 100 (279)
T ss_pred CCHHHHHHHHHHHH-----HCCCCEEEEEeccC-CC----------CcccHH-HHHHHHHHHHhhCCCcEEEecCCCC--
Confidence 79999999999884 446666655 4322 11 101111 2677788999887666666554432
Q ss_pred CCCCcccccHHhHHHHHHHcCCcEEEeecC
Q 016207 184 QVRPGSLFHEKDDAPLFASWGVDYLKYDNC 213 (393)
Q Consensus 184 ~~~pgs~~~~~~~~~~~~~wGvdylK~D~~ 213 (393)
-.+.++.|++.|+|.+-++.-
T Consensus 101 ---------~~e~l~~Lk~aGld~~~~~lE 121 (279)
T PRK08508 101 ---------SVEQLKELKKAGIFSYNHNLE 121 (279)
T ss_pred ---------CHHHHHHHHHcCCCEEccccc
Confidence 156788899999999988643
No 118
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=43.44 E-value=46 Score=31.13 Aligned_cols=41 Identities=24% Similarity=0.393 Sum_probs=33.6
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCcEEEeecC
Q 016207 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNC 213 (393)
Q Consensus 159 ~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~~ 213 (393)
..+++.+|++|+++.+|+-... ..++.+.++|||+|=.|+-
T Consensus 191 ~~~v~~~~~~G~~v~~wTvn~~--------------~~~~~l~~~GVdgi~TD~p 231 (233)
T cd08582 191 PAFIKALRDAGLKLNVWTVDDA--------------EDAKRLIELGVDSITTNRP 231 (233)
T ss_pred HHHHHHHHHCCCEEEEEeCCCH--------------HHHHHHHHCCCCEEEcCCC
Confidence 6899999999999999975422 3567788999999988864
No 119
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=43.17 E-value=95 Score=31.32 Aligned_cols=102 Identities=20% Similarity=0.152 Sum_probs=60.3
Q ss_pred CCCCHHHHHHHHHHHHH--cCCcccCceEEEeCCC---------c--CCCCCCCCCCccccCCCCCCCHHHHHHHHHHc-
Q 016207 103 CNISETIIKETADALVS--TGLAELGYDHVNIDDC---------W--SSPLRDLKGQLVPDTITFPSGIKALADYVHGK- 168 (393)
Q Consensus 103 ~~i~e~~i~~~ad~~~~--~gl~~~G~~~~~IDDG---------W--~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~- 168 (393)
..+|+++|.+.++.+++ ...+++|++-|.|=.+ . .....|.+|--.-+..+| +..+++.|++.
T Consensus 125 ~~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~---~~eiv~aIR~~v 201 (353)
T cd02930 125 RELSEEEIEQTIEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRF---PVEIVRAVRAAV 201 (353)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHH---HHHHHHHHHHHc
Confidence 46899999888776654 2345689999999432 1 121335554333454565 46778888763
Q ss_pred C--CeEEEEeeCCccccCCCCccccc--HHhHHHHHHHcCCcEEEee
Q 016207 169 G--LKLGIYSDAGVFTCQVRPGSLFH--EKDDAPLFASWGVDYLKYD 211 (393)
Q Consensus 169 G--mk~Glw~~pg~~~c~~~pgs~~~--~~~~~~~~~~wGvdylK~D 211 (393)
| +.+++=+.+.. ..++.... ....++.+.+.|+|||-+-
T Consensus 202 G~d~~v~iRi~~~D----~~~~g~~~~e~~~i~~~Le~~G~d~i~vs 244 (353)
T cd02930 202 GEDFIIIYRLSMLD----LVEGGSTWEEVVALAKALEAAGADILNTG 244 (353)
T ss_pred CCCceEEEEecccc----cCCCCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 4 44555444311 11221221 2356788899999999884
No 120
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=43.14 E-value=46 Score=32.75 Aligned_cols=41 Identities=12% Similarity=0.083 Sum_probs=34.1
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCcEEEeecC
Q 016207 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNC 213 (393)
Q Consensus 159 ~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~~ 213 (393)
+.+++.+|+.|+++.+|+--. ...++.+.+||||.|=.|+-
T Consensus 251 ~~~v~~~~~~G~~v~vWTVNd--------------~~~~~~l~~~GVdgIiTD~P 291 (300)
T cd08612 251 PSLFRHLQKRGIQVYGWVLND--------------EEEFERAFELGADGVMTDYP 291 (300)
T ss_pred HHHHHHHHHCCCEEEEeecCC--------------HHHHHHHHhcCCCEEEeCCH
Confidence 689999999999999997432 24788899999999988863
No 121
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=42.54 E-value=50 Score=31.42 Aligned_cols=41 Identities=27% Similarity=0.378 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCcEEEeecC
Q 016207 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNC 213 (393)
Q Consensus 159 ~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~~ 213 (393)
+.+++.+|++|+++.+|+--. ...++.+.++|||+|=.|+-
T Consensus 208 ~~~v~~~~~~g~~v~~wTvn~--------------~~~~~~l~~~Gvd~IiTD~p 248 (256)
T cd08601 208 PWMVHLIHKKGLLVHPYTVNE--------------KADMIRLINWGVDGMFTNYP 248 (256)
T ss_pred HHHHHHHHHCCCEEEEEecCC--------------HHHHHHHHhcCCCEEEeCCH
Confidence 689999999999999997431 34667888999999998874
No 122
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=42.07 E-value=46 Score=30.80 Aligned_cols=40 Identities=25% Similarity=0.351 Sum_probs=32.2
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCcEEEeec
Q 016207 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDN 212 (393)
Q Consensus 159 ~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~ 212 (393)
+.+++.+|++|+++.+|+-.. ...++.+.++|+|+|=.|+
T Consensus 180 ~~~v~~~~~~G~~v~~wtvn~--------------~~~~~~~~~~Gvd~i~TD~ 219 (220)
T cd08579 180 KEFIRQAHQNGKKVYVWTVND--------------PDDMQRYLAMGVDGIITDY 219 (220)
T ss_pred HHHHHHHHHCCCEEEEEcCCC--------------HHHHHHHHHcCCCEEeCCC
Confidence 688999999999999996321 1356788899999998775
No 123
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=41.97 E-value=1.4e+02 Score=30.22 Aligned_cols=106 Identities=21% Similarity=0.205 Sum_probs=63.5
Q ss_pred CCC-CHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcCCeEEEEeeCCcc
Q 016207 103 CNI-SETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVF 181 (393)
Q Consensus 103 ~~i-~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Glw~~pg~~ 181 (393)
|.+ +++.+++.|..+++ +|.+. +-.|=++ .|..-..+.--. ..|++-|.++.++.|+.+-- ++
T Consensus 101 CsiEs~e~~~~~A~~lk~-----~ga~~--~r~~~fK-pRTsp~sf~G~g---~~gL~~L~~~~~~~Gl~v~t--ev--- 164 (335)
T PRK08673 101 CSVESEEQILEIARAVKE-----AGAQI--LRGGAFK-PRTSPYSFQGLG---EEGLKLLAEAREETGLPIVT--EV--- 164 (335)
T ss_pred CccCCHHHHHHHHHHHHH-----hchhh--ccCcEec-CCCCCccccccc---HHHHHHHHHHHHHcCCcEEE--ee---
Confidence 443 89999999999954 44442 2122233 333211111100 34899999999999998753 22
Q ss_pred ccCCCCcccccHHhHHHHHHHcCCcEEEeecCCCCCCCccccchHHHHHHHhcCCCceeec
Q 016207 182 TCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYSL 242 (393)
Q Consensus 182 ~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~AL~~agr~i~~sl 242 (393)
+-...++.+.+. +|++|+=--.... ..+.+++.++|.|++++.
T Consensus 165 ----------~d~~~~~~l~~~-vd~lqIgAr~~~N-------~~LL~~va~~~kPViLk~ 207 (335)
T PRK08673 165 ----------MDPRDVELVAEY-VDILQIGARNMQN-------FDLLKEVGKTNKPVLLKR 207 (335)
T ss_pred ----------CCHHHHHHHHHh-CCeEEECcccccC-------HHHHHHHHcCCCcEEEeC
Confidence 223466777788 8999985432211 345566666778887774
No 124
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=41.92 E-value=37 Score=32.23 Aligned_cols=87 Identities=10% Similarity=0.102 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHcCCeEEEEeeCCcc--c--cCCCC-cccccHHhHHHHHHHcCCcEEEeecCCCCCC------Cccccch
Q 016207 157 GIKALADYVHGKGLKLGIYSDAGVF--T--CQVRP-GSLFHEKDDAPLFASWGVDYLKYDNCFNLGI------EPKKRYP 225 (393)
Q Consensus 157 Gl~~l~d~vh~~Gmk~Glw~~pg~~--~--c~~~p-gs~~~~~~~~~~~~~wGvdylK~D~~~~~~~------~~~~~y~ 225 (393)
-.+..+..+|++|.|+=+-+.-... . ....+ +...|.+..++.+.++|+|.|=+|+-+.... ...+.|.
T Consensus 52 ~~~~~i~~l~~kG~KVl~sigg~~~~~~~~~~~~~~~~~~fa~~l~~~v~~yglDGiDiD~E~~~~~~~~~~~~~~~~~~ 131 (255)
T cd06542 52 NKETYIRPLQAKGTKVLLSILGNHLGAGFANNLSDAAAKAYAKAIVDTVDKYGLDGVDFDDEYSGYGKNGTSQPSNEAFV 131 (255)
T ss_pred HHHHHHHHHhhCCCEEEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHhCCCceEEeeeecccCCCCCCcchHHHHH
Confidence 3677888889999997654432110 1 11122 2355678888889999999999999765431 1235566
Q ss_pred HHHHHHHhc-CC-Cceeecc
Q 016207 226 PMRDALNET-GC-SIFYSLC 243 (393)
Q Consensus 226 ~m~~AL~~a-gr-~i~~slc 243 (393)
.+.++|++. ++ ..++++.
T Consensus 132 ~lv~~Lr~~~~~~~kllt~~ 151 (255)
T cd06542 132 RLIKELRKYMGPTDKLLTID 151 (255)
T ss_pred HHHHHHHHHhCcCCcEEEEE
Confidence 666776543 33 4555544
No 125
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=41.64 E-value=1.3e+02 Score=30.75 Aligned_cols=106 Identities=16% Similarity=0.150 Sum_probs=63.6
Q ss_pred CCCCHHHHHHHHHHHHH--cCCcccCceEEEeCCCc-----------CCCCCCCCCCccccCCCCCCCHHHHHHHHHHc-
Q 016207 103 CNISETIIKETADALVS--TGLAELGYDHVNIDDCW-----------SSPLRDLKGQLVPDTITFPSGIKALADYVHGK- 168 (393)
Q Consensus 103 ~~i~e~~i~~~ad~~~~--~gl~~~G~~~~~IDDGW-----------~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~- 168 (393)
..+|+++|.+.++..++ ...+++|++-|.|-.+- ...+.|.+|-=.-|..|| +..+++.|++.
T Consensus 147 ~~mt~~eI~~ii~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf---~~Eiv~aVr~~v 223 (362)
T PRK10605 147 RALELEEIPGIVNDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARL---VLEVVDAGIAEW 223 (362)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHH---HHHHHHHHHHHc
Confidence 46889888888775544 23457899999997653 111235565444566788 55778888753
Q ss_pred CC-eEEEEeeCCccccCCCCcccccH---HhHHHHHHHcCCcEEEeec
Q 016207 169 GL-KLGIYSDAGVFTCQVRPGSLFHE---KDDAPLFASWGVDYLKYDN 212 (393)
Q Consensus 169 Gm-k~Glw~~pg~~~c~~~pgs~~~~---~~~~~~~~~wGvdylK~D~ 212 (393)
|= .+|+=+.+....+ ..++...-. ...++.+.+.|+|||-+-.
T Consensus 224 g~~~igvRis~~~~~~-~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~ 270 (362)
T PRK10605 224 GADRIGIRISPLGTFN-NVDNGPNEEADALYLIEQLGKRGIAYLHMSE 270 (362)
T ss_pred CCCeEEEEECCccccc-cCCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Confidence 21 2676666532111 112222222 3456778899999998753
No 126
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=41.41 E-value=1e+02 Score=31.16 Aligned_cols=103 Identities=23% Similarity=0.238 Sum_probs=64.1
Q ss_pred CCCCHHHHHHHHHHHHH--cCCcccCceEEEeCCCc--------CC--CC-CCCC-CCccccCCCCCCCHHHHHHHHHH-
Q 016207 103 CNISETIIKETADALVS--TGLAELGYDHVNIDDCW--------SS--PL-RDLK-GQLVPDTITFPSGIKALADYVHG- 167 (393)
Q Consensus 103 ~~i~e~~i~~~ad~~~~--~gl~~~G~~~~~IDDGW--------~~--~~-rd~~-G~~~~d~~kFP~Gl~~l~d~vh~- 167 (393)
..+|+++|.+.++.+++ ...+++|++-|.|-.+- .. +. .|.+ |++ -|..+| +..+++.|++
T Consensus 132 ~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGsl-enR~r~---~~eii~~vr~~ 207 (353)
T cd04735 132 RELTHEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSL-ENRMRF---PLAVVKAVQEV 207 (353)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcH-HHHHHH---HHHHHHHHHHH
Confidence 56899888888776544 23456899999987652 21 12 3455 454 466677 5677777775
Q ss_pred ------cCCeEEEEeeCCccccCCCCcccccH--HhHHHHHHHcCCcEEEeecC
Q 016207 168 ------KGLKLGIYSDAGVFTCQVRPGSLFHE--KDDAPLFASWGVDYLKYDNC 213 (393)
Q Consensus 168 ------~Gmk~Glw~~pg~~~c~~~pgs~~~~--~~~~~~~~~wGvdylK~D~~ 213 (393)
..+.+|+=+.+.. ..++..... ...++.+.+.|+|||-+...
T Consensus 208 vg~~~~~~~~v~~R~s~~~----~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g 257 (353)
T cd04735 208 IDKHADKDFILGYRFSPEE----PEEPGIRMEDTLALVDKLADKGLDYLHISLW 257 (353)
T ss_pred hccccCCCceEEEEECccc----ccCCCCCHHHHHHHHHHHHHcCCCEEEeccC
Confidence 3456666555422 112222222 34568889999999998753
No 127
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=41.03 E-value=54 Score=30.30 Aligned_cols=40 Identities=25% Similarity=0.400 Sum_probs=32.5
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCcEEEeec
Q 016207 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDN 212 (393)
Q Consensus 159 ~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~ 212 (393)
+.+++.+|++|+++..|+--. ...++.+.++|||+|=.|+
T Consensus 189 ~~~v~~~~~~g~~v~~wTvn~--------------~~~~~~~~~~gVdgiiTD~ 228 (229)
T cd08562 189 EEQVKALKDAGYKLLVYTVND--------------PARAAELLEWGVDAIFTDR 228 (229)
T ss_pred HHHHHHHHHCCCEEEEEeCCC--------------HHHHHHHHHCCCCEEEcCC
Confidence 579999999999999996421 1467788899999998875
No 128
>cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=40.29 E-value=45 Score=32.77 Aligned_cols=42 Identities=29% Similarity=0.387 Sum_probs=33.8
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCcEEEeec
Q 016207 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDN 212 (393)
Q Consensus 159 ~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~ 212 (393)
+.+++.+|+.|+++..|+.... ....++.+.++|||.|-.|+
T Consensus 251 ~~~v~~~~~~Gl~v~~wTv~~n------------~~~~~~~l~~~GVdgIiTD~ 292 (293)
T cd08572 251 PSLISLVKALGLVLFTYGDDNN------------DPENVKKQKELGVDGVIYDR 292 (293)
T ss_pred cHHHHHHHHcCcEEEEECCCCC------------CHHHHHHHHHcCCCEEEecC
Confidence 5899999999999999987211 02467889999999999886
No 129
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=39.96 E-value=91 Score=31.53 Aligned_cols=44 Identities=20% Similarity=0.343 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCcEEEeecCC
Q 016207 156 SGIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCF 214 (393)
Q Consensus 156 ~Gl~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~~~ 214 (393)
.+++.|.++.+++|+.|- ++| +-...++.+.+.|++.+|+=-..
T Consensus 76 e~~~~L~~~~~~~Gi~~~--stp-------------fd~~svd~l~~~~v~~~KIaS~~ 119 (329)
T TIGR03569 76 EDHRELKEYCESKGIEFL--STP-------------FDLESADFLEDLGVPRFKIPSGE 119 (329)
T ss_pred HHHHHHHHHHHHhCCcEE--EEe-------------CCHHHHHHHHhcCCCEEEECccc
Confidence 368999999999999874 233 33456788899999999986544
No 130
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=39.92 E-value=1.8e+02 Score=28.86 Aligned_cols=54 Identities=19% Similarity=0.224 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcCC--eEEEEee
Q 016207 104 NISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGL--KLGIYSD 177 (393)
Q Consensus 104 ~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gm--k~Glw~~ 177 (393)
.++.++++..++.+ .++|++.|.+=. |..... | .+..+++++++.+. ++.|-++
T Consensus 44 ~ls~eei~~li~~~-----~~~Gv~~I~~tG----------GEPllr----~-dl~~li~~i~~~~~l~~i~itTN 99 (329)
T PRK13361 44 VLSLEELAWLAQAF-----TELGVRKIRLTG----------GEPLVR----R-GCDQLVARLGKLPGLEELSLTTN 99 (329)
T ss_pred CCCHHHHHHHHHHH-----HHCCCCEEEEEC----------cCCCcc----c-cHHHHHHHHHhCCCCceEEEEeC
Confidence 57889999999988 456788888732 333333 2 38888999988764 5666444
No 131
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=39.91 E-value=41 Score=30.67 Aligned_cols=70 Identities=13% Similarity=0.183 Sum_probs=42.6
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCcEEEeecCCCCCCCccccch----HHHHHHHhc
Q 016207 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYP----PMRDALNET 234 (393)
Q Consensus 159 ~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~----~m~~AL~~a 234 (393)
....+.+++.|++++|=-- | .-......+..+.+||||+|.-...... .+... .+.+..+..
T Consensus 137 ~~~l~~l~~~G~~i~ld~~-g------------~~~~~~~~l~~l~~~~ikld~~~~~~~~-~~~~~~~l~~l~~~~~~~ 202 (236)
T PF00563_consen 137 LENLRRLRSLGFRIALDDF-G------------SGSSSLEYLASLPPDYIKLDGSLVRDLS-DEEAQSLLQSLINLAKSL 202 (236)
T ss_dssp HHHHHHHHHCT-EEEEEEE-T------------STCGCHHHHHHHCGSEEEEEHHGHTTTT-SHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCceeEeeec-c------------CCcchhhhhhhcccccceeecccccccc-hhhHHHHHHHHHHHhhcc
Confidence 4666779999999987311 1 1112466789999999999997554333 23333 334444566
Q ss_pred CCCceeec
Q 016207 235 GCSIFYSL 242 (393)
Q Consensus 235 gr~i~~sl 242 (393)
|-.++.+.
T Consensus 203 ~~~via~g 210 (236)
T PF00563_consen 203 GIKVIAEG 210 (236)
T ss_dssp T-EEEEEC
T ss_pred ccccceee
Confidence 77777763
No 132
>PLN02801 beta-amylase
Probab=39.68 E-value=47 Score=35.52 Aligned_cols=58 Identities=26% Similarity=0.262 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcCCeEE
Q 016207 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLG 173 (393)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~G 173 (393)
.+.+.+.+...+| +.+|++=|.+|.=|...++...+.... +|-+.|++-|++.|||+=
T Consensus 34 ~~~~~l~~~L~~L-----K~~GVdGVmvDVWWGiVE~~~P~~YdW------sgY~~l~~mvr~~GLKlq 91 (517)
T PLN02801 34 EDEEGLEKQLKRL-----KEAGVDGVMVDVWWGIVESKGPKQYDW------SAYRSLFELVQSFGLKIQ 91 (517)
T ss_pred CCHHHHHHHHHHH-----HHcCCCEEEEeeeeeeeccCCCCccCc------HHHHHHHHHHHHcCCeEE
Confidence 4677888888888 788999999986554433332221111 378999999999999973
No 133
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=39.54 E-value=1.3e+02 Score=30.76 Aligned_cols=57 Identities=21% Similarity=0.117 Sum_probs=41.5
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCccccCCCCc----ccccHHhHHHHHHHcCCcEEEeecCCC
Q 016207 158 IKALADYVHGKGLKLGIYSDAGVFTCQVRPG----SLFHEKDDAPLFASWGVDYLKYDNCFN 215 (393)
Q Consensus 158 l~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pg----s~~~~~~~~~~~~~wGvdylK~D~~~~ 215 (393)
+..+++..|+.||-+-+|.-|--.. ...++ +-+.+...++.-+|.|.|.||..++..
T Consensus 181 l~~i~~ea~~~GlPlv~~~YpRG~~-i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~ 241 (348)
T PRK09250 181 ISEAFEEAHELGLATVLWSYLRNSA-FKKDGDYHTAADLTGQANHLAATIGADIIKQKLPTN 241 (348)
T ss_pred HHHHHHHHHHhCCCEEEEecccCcc-cCCcccccccHHHHHHHHHHHHHHcCCEEEecCCCC
Confidence 7888899999999999988663211 12222 124566667777899999999999854
No 134
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=39.18 E-value=58 Score=30.81 Aligned_cols=41 Identities=17% Similarity=0.265 Sum_probs=34.3
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCcEEEeecC
Q 016207 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNC 213 (393)
Q Consensus 159 ~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~~ 213 (393)
+.+++++|+.|+++.+|+-.. ...++.+.++|||+|=.|+-
T Consensus 202 ~~~v~~~~~~G~~v~vWTVN~--------------~~~~~~l~~~gVdgIiTD~p 242 (249)
T cd08561 202 PRFVRAAHAAGLEVHVWTVND--------------PAEMRRLLDLGVDGIITDRP 242 (249)
T ss_pred HHHHHHHHHCCCEEEEEecCC--------------HHHHHHHHhcCCCEEEcCCH
Confidence 689999999999999998432 25778899999999988863
No 135
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=39.04 E-value=75 Score=29.69 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.8
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCc
Q 016207 158 IKALADYVHGKGLKLGIYSDAGV 180 (393)
Q Consensus 158 l~~l~d~vh~~Gmk~Glw~~pg~ 180 (393)
+..+.+++|+.|+|+||-+.|++
T Consensus 94 ~~~~i~~ik~~g~k~GialnP~T 116 (201)
T PF00834_consen 94 PKETIKYIKEAGIKAGIALNPET 116 (201)
T ss_dssp HHHHHHHHHHTTSEEEEEE-TTS
T ss_pred HHHHHHHHHHhCCCEEEEEECCC
Confidence 78999999999999999999985
No 136
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=39.04 E-value=1.3e+02 Score=27.54 Aligned_cols=103 Identities=14% Similarity=0.112 Sum_probs=56.8
Q ss_pred cccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHH
Q 016207 123 AELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFAS 202 (393)
Q Consensus 123 ~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~ 202 (393)
++.|+++++|=.+ .|.-..|+ + .+.=.+..++.||++|.|.=.-. .+.+.+..-.+..++.++.
T Consensus 22 k~~Gi~faiikat--------eG~~~~D~-~----~~~n~~~A~~aGl~vG~Yhf~~~---~~~~~a~~eA~~f~~~~~~ 85 (192)
T cd06522 22 KNYGVKAVIVKLT--------EGTTYRNP-Y----AASQIANAKAAGLKVSAYHYAHY---TSAADAQAEARYFANTAKS 85 (192)
T ss_pred HHcCCCEEEEEEc--------CCCCccCh-H----HHHHHHHHHHCCCeeEEEEEEec---CChHHHHHHHHHHHHHHHH
Confidence 4558888888542 23334553 2 56667778899999999974321 1112223223334455666
Q ss_pred cCCc---EEEeecCCCCCC-CccccchHHHHHHHhcC--CCceee
Q 016207 203 WGVD---YLKYDNCFNLGI-EPKKRYPPMRDALNETG--CSIFYS 241 (393)
Q Consensus 203 wGvd---ylK~D~~~~~~~-~~~~~y~~m~~AL~~ag--r~i~~s 241 (393)
.|+. .+-+|.=..... ........+.+.+++.| ++++++
T Consensus 86 ~~~~~~~~~~lD~E~~~~~~~~~~~~~~F~~~v~~~g~~~~~iY~ 130 (192)
T cd06522 86 LGLSKNTVMVADMEDSSSSGNATANVNAFWQTMKAAGYKNTDVYT 130 (192)
T ss_pred cCCCCCCceEEEeecCCCcchHHHHHHHHHHHHHHcCCCCcEEEc
Confidence 6654 355676433221 11122345666677666 577776
No 137
>PLN02803 beta-amylase
Probab=39.03 E-value=47 Score=35.69 Aligned_cols=59 Identities=24% Similarity=0.291 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcCCeEEE
Q 016207 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGI 174 (393)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Gl 174 (393)
.+.+.+.+...+| +.+|++=|.+|.=|...++...+.... +|-+.|++-|++.|||+=.
T Consensus 104 ~~~~~l~~~L~~L-----K~~GVdGVmvDVWWGiVE~~~p~~YdW------sgY~~l~~mvr~~GLKlq~ 162 (548)
T PLN02803 104 NKPRAMNASLMAL-----RSAGVEGVMVDAWWGLVEKDGPMKYNW------EGYAELVQMVQKHGLKLQV 162 (548)
T ss_pred cCHHHHHHHHHHH-----HHcCCCEEEEEeeeeeeccCCCCcCCc------HHHHHHHHHHHHcCCeEEE
Confidence 3567788888888 778999999986554433332221111 3789999999999999643
No 138
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=38.97 E-value=1.7e+02 Score=29.42 Aligned_cols=106 Identities=19% Similarity=0.136 Sum_probs=63.5
Q ss_pred CCCCHHHHHHHHHHHHH--cCCcccCceEEEeCCCc-----------CCCCCCCCCCccccCCCCCCCHHHHHHHHHHc-
Q 016207 103 CNISETIIKETADALVS--TGLAELGYDHVNIDDCW-----------SSPLRDLKGQLVPDTITFPSGIKALADYVHGK- 168 (393)
Q Consensus 103 ~~i~e~~i~~~ad~~~~--~gl~~~G~~~~~IDDGW-----------~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~- 168 (393)
..+|+++|.+.++.+++ ...+++|++-|.|-.+- .....|.+|-=.-|..+| +..+++.|++.
T Consensus 140 ~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf---~~eii~air~~v 216 (338)
T cd02933 140 RALTTEEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARF---LLEVVDAVAEAI 216 (338)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhH---HHHHHHHHHHHh
Confidence 46888888888776554 23456899999997554 222234554324566677 66888888863
Q ss_pred CC-eEEEEeeCCccccCCCCcccc--cHHhHHHHHHHcCCcEEEeec
Q 016207 169 GL-KLGIYSDAGVFTCQVRPGSLF--HEKDDAPLFASWGVDYLKYDN 212 (393)
Q Consensus 169 Gm-k~Glw~~pg~~~c~~~pgs~~--~~~~~~~~~~~wGvdylK~D~ 212 (393)
|- .+|+=+.+.... ...++... -....++.+.+.|+|||-+-.
T Consensus 217 g~d~v~vRis~~~~~-~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~ 262 (338)
T cd02933 217 GADRVGIRLSPFGTF-NDMGDSDPEATFSYLAKELNKRGLAYLHLVE 262 (338)
T ss_pred CCCceEEEECccccC-CCCCCCCCHHHHHHHHHHHHHcCCcEEEEec
Confidence 54 355545443210 11111112 223567888899999999843
No 139
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=38.93 E-value=1.6e+02 Score=30.01 Aligned_cols=83 Identities=12% Similarity=0.205 Sum_probs=47.7
Q ss_pred HHHHHHHHHHcCCeEEEE--eeCCccccCCCC-----cccccHHhHHHHHH--HcCCcEEEeecCCCC----CC------
Q 016207 158 IKALADYVHGKGLKLGIY--SDAGVFTCQVRP-----GSLFHEKDDAPLFA--SWGVDYLKYDNCFNL----GI------ 218 (393)
Q Consensus 158 l~~l~d~vh~~Gmk~Glw--~~pg~~~c~~~p-----gs~~~~~~~~~~~~--~wGvdylK~D~~~~~----~~------ 218 (393)
++.+++.+++.||.+-+- .-|.... .... -.-+.+...++.+. +.|+|.+|+.+.... +.
T Consensus 145 l~rv~~ec~~~giPlllE~l~y~~~~~-~~~~~~~a~~~p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~ 223 (340)
T PRK12858 145 VERVGAECRANDIPFFLEPLTYDGKGS-DKKAEEFAKVKPEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEA 223 (340)
T ss_pred HHHHHHHHHHcCCceEEEEeccCCCcc-ccccccccccCHHHHHHHHHHHhhhccCCeEEEeeCCCCccccccccccccc
Confidence 677777778888776552 2111000 0000 01124556678888 599999999997543 11
Q ss_pred -CccccchHHHHHHHhcCCCceee
Q 016207 219 -EPKKRYPPMRDALNETGCSIFYS 241 (393)
Q Consensus 219 -~~~~~y~~m~~AL~~agr~i~~s 241 (393)
...+....+.+..+.++.|+++.
T Consensus 224 ~~~~~~~~~f~~~~~a~~~P~vvl 247 (340)
T PRK12858 224 YTQEEAFKLFREQSDATDLPFIFL 247 (340)
T ss_pred ccHHHHHHHHHHHHhhCCCCEEEE
Confidence 11112234666667788898874
No 140
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=38.70 E-value=53 Score=31.43 Aligned_cols=39 Identities=10% Similarity=-0.009 Sum_probs=32.2
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCcEEEee
Q 016207 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYD 211 (393)
Q Consensus 159 ~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D 211 (393)
+.+++.+|+.|+++.+|+--.. ..++.+.++|||.|=-|
T Consensus 213 ~~~v~~~~~~g~~v~~WTVn~~--------------~~~~~l~~~GVdgIiTD 251 (252)
T cd08574 213 AQEIREYSKANISVNLYVVNEP--------------WLYSLLWCSGVQSVTTN 251 (252)
T ss_pred HHHHHHHHHCCCEEEEEccCCH--------------HHHHHHHHcCCCEEecC
Confidence 5799999999999999986432 36788899999998665
No 141
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=38.52 E-value=1.1e+02 Score=35.27 Aligned_cols=86 Identities=16% Similarity=0.217 Sum_probs=57.4
Q ss_pred HHHHHHHHHHcCCeEEEEee-------------------CCc------------cccC-----CCCcccccHHhHHHHH-
Q 016207 158 IKALADYVHGKGLKLGIYSD-------------------AGV------------FTCQ-----VRPGSLFHEKDDAPLF- 200 (393)
Q Consensus 158 l~~l~d~vh~~Gmk~Glw~~-------------------pg~------------~~c~-----~~pgs~~~~~~~~~~~- 200 (393)
+|.|++.+|++||++-|=+- |++ .+|. .+|.+..|+...++.+
T Consensus 406 fk~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~a~e~~~Vrk~iiDsl~~W~ 485 (898)
T TIGR02103 406 FREMVQALNKTGLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGGVENSTCCSNTATEHRMMAKLIVDSLVVWA 485 (898)
T ss_pred HHHHHHHHHHCCCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCCeecCCCCcCCCCCCHHHHHHHHHHHHHHH
Confidence 89999999999999754221 110 1221 2455566775566665
Q ss_pred HHcCCcEEEeecCCCCCCCccccchHHHHHHHhcCCCceeeccCCC
Q 016207 201 ASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYSLCEWG 246 (393)
Q Consensus 201 ~~wGvdylK~D~~~~~~~~~~~~y~~m~~AL~~agr~i~~slc~~g 246 (393)
+++|||.+.+|-...-. .+....+++++++..+++++-.-.|.
T Consensus 486 ~ey~VDGFRfDlm~~~~---~~f~~~~~~~l~~i~pdi~l~GEgW~ 528 (898)
T TIGR02103 486 KDYKVDGFRFDLMGHHP---KAQMLAAREAIKALTPEIYFYGEGWD 528 (898)
T ss_pred HHcCCCEEEEechhhCC---HHHHHHHHHHHHHhCCCEEEEecCCC
Confidence 48999999999875432 33446777788888888777655564
No 142
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=38.22 E-value=57 Score=30.84 Aligned_cols=41 Identities=29% Similarity=0.334 Sum_probs=33.0
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCcEEEeecC
Q 016207 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNC 213 (393)
Q Consensus 159 ~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~~ 213 (393)
..+++.+|++|+++.+|+-.. ...++.+.++|||+|=.|+-
T Consensus 221 ~~~i~~~~~~G~~v~vwtvn~--------------~~~~~~~~~~Gvdgi~TD~P 261 (263)
T cd08567 221 KELVDEAHALGLKVVPWTVND--------------PEDMARLIDLGVDGIITDYP 261 (263)
T ss_pred HHHHHHHHHCCCEEEEecCCC--------------HHHHHHHHHcCCCEEEcCCC
Confidence 579999999999999997421 14567888999999988863
No 143
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=37.23 E-value=2.3e+02 Score=25.71 Aligned_cols=61 Identities=16% Similarity=0.173 Sum_probs=41.3
Q ss_pred cccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcCCeEEEEe-eCCccccCCCCcccccHHhHHHHHH
Q 016207 123 AELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYS-DAGVFTCQVRPGSLFHEKDDAPLFA 201 (393)
Q Consensus 123 ~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Glw~-~pg~~~c~~~pgs~~~~~~~~~~~~ 201 (393)
.++|.+++.+.... . +.-++.++++++++|+++++=+ .|.. ....++...
T Consensus 73 ~~~Gad~i~vh~~~-~----------------~~~~~~~i~~~~~~g~~~~~~~~~~~t------------~~~~~~~~~ 123 (206)
T TIGR03128 73 FAAGADIVTVLGVA-D----------------DATIKGAVKAAKKHGKEVQVDLINVKD------------KVKRAKELK 123 (206)
T ss_pred HHcCCCEEEEeccC-C----------------HHHHHHHHHHHHHcCCEEEEEecCCCC------------hHHHHHHHH
Confidence 56688888876321 0 0126899999999999999842 3321 223455567
Q ss_pred HcCCcEEEeec
Q 016207 202 SWGVDYLKYDN 212 (393)
Q Consensus 202 ~wGvdylK~D~ 212 (393)
+.|+||||+..
T Consensus 124 ~~g~d~v~~~p 134 (206)
T TIGR03128 124 ELGADYIGVHT 134 (206)
T ss_pred HcCCCEEEEcC
Confidence 78999999964
No 144
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=36.82 E-value=1.3e+02 Score=30.40 Aligned_cols=102 Identities=22% Similarity=0.241 Sum_probs=61.5
Q ss_pred CCCCHHHHHHHHHHHHHc--CCcccCceEEEeCC--CcC------C--CCC-CCCCCccccCCCCCCCHHHHHHHHHHc-
Q 016207 103 CNISETIIKETADALVST--GLAELGYDHVNIDD--CWS------S--PLR-DLKGQLVPDTITFPSGIKALADYVHGK- 168 (393)
Q Consensus 103 ~~i~e~~i~~~ad~~~~~--gl~~~G~~~~~IDD--GW~------~--~~r-d~~G~~~~d~~kFP~Gl~~l~d~vh~~- 168 (393)
..+|.++|.+..+.+++. ...++|++-|.|=. |+- . ..| |.+|-=.-+..+| +..+++.|++.
T Consensus 129 ~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~---~~eiv~~ir~~v 205 (343)
T cd04734 129 KAMEEEDIEEIIAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRF---LLEVLAAVRAAV 205 (343)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHH---HHHHHHHHHHHc
Confidence 468999888887765442 23568999999887 652 1 123 5565433444566 56788888764
Q ss_pred CC--eEEEEeeCCccccCCCCccccc--HHhHHHHHHHcC-CcEEEee
Q 016207 169 GL--KLGIYSDAGVFTCQVRPGSLFH--EKDDAPLFASWG-VDYLKYD 211 (393)
Q Consensus 169 Gm--k~Glw~~pg~~~c~~~pgs~~~--~~~~~~~~~~wG-vdylK~D 211 (393)
|. .+++=+.+... .++.... ....++.+.+.| +|||-+-
T Consensus 206 g~~~~v~iRl~~~~~----~~~G~~~~e~~~~~~~l~~~G~vd~i~vs 249 (343)
T cd04734 206 GPDFIVGIRISGDED----TEGGLSPDEALEIAARLAAEGLIDYVNVS 249 (343)
T ss_pred CCCCeEEEEeehhhc----cCCCCCHHHHHHHHHHHHhcCCCCEEEeC
Confidence 54 44554443211 1221111 235578888998 8999884
No 145
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=36.79 E-value=2.7e+02 Score=27.59 Aligned_cols=87 Identities=11% Similarity=-0.026 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHcCCeEEEEeeCCccc-c-CCCCcccccHHhHHHHHHHcCCcEEEeecCCCCCCC--ccccchHHHHHHH
Q 016207 157 GIKALADYVHGKGLKLGIYSDAGVFT-C-QVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIE--PKKRYPPMRDALN 232 (393)
Q Consensus 157 Gl~~l~d~vh~~Gmk~Glw~~pg~~~-c-~~~pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~--~~~~y~~m~~AL~ 232 (393)
.+..-+..++++|.|+-|=+--.... . .+........+...+.+..||+|.|-+|.-+....+ ..++.....+.|+
T Consensus 55 ~~~~~i~~lk~~G~kViiS~GG~~g~~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq 134 (294)
T cd06543 55 WIKSDIAALRAAGGDVIVSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQ 134 (294)
T ss_pred hHHHHHHHHHHcCCeEEEEecCCCCCccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHH
Confidence 36777889999999877755321100 0 111122334455667788999999999998754322 1234444445555
Q ss_pred hcCCCceeecc
Q 016207 233 ETGCSIFYSLC 243 (393)
Q Consensus 233 ~agr~i~~slc 243 (393)
+..+++.+++.
T Consensus 135 ~~~p~l~vs~T 145 (294)
T cd06543 135 KEYPDLKISFT 145 (294)
T ss_pred HHCCCcEEEEe
Confidence 55566777754
No 146
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=36.52 E-value=1.1e+02 Score=32.98 Aligned_cols=62 Identities=19% Similarity=0.310 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCC-----ccccCCCCC--CCHHHHHHHHHHcCCeEEE
Q 016207 106 SETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQ-----LVPDTITFP--SGIKALADYVHGKGLKLGI 174 (393)
Q Consensus 106 ~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~-----~~~d~~kFP--~Gl~~l~d~vh~~Gmk~Gl 174 (393)
+-+.|.+.++.+ +++|++.|.|=--+..... ..|. ..+|+ .|- ..++.|++.+|++||++-|
T Consensus 31 dl~gi~~~ldyl-----~~lGv~~i~l~P~~~~~~~-~~gY~~~d~~~id~-~~Gt~~d~~~lv~~~h~~gi~vil 99 (551)
T PRK10933 31 DLRGVTQRLDYL-----QKLGVDAIWLTPFYVSPQV-DNGYDVANYTAIDP-TYGTLDDFDELVAQAKSRGIRIIL 99 (551)
T ss_pred CHHHHHHhhHHH-----HhCCCCEEEECCCCCCCCC-CCCCCcccCCCcCc-ccCCHHHHHHHHHHHHHCCCEEEE
Confidence 566777888888 7889998877333221110 1122 22332 332 2599999999999999764
No 147
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=36.38 E-value=1.8e+02 Score=27.90 Aligned_cols=76 Identities=9% Similarity=0.065 Sum_probs=49.0
Q ss_pred HHHHHHHHHHcCC--eEEEEeeCCcccc---------------CCCCc--ccccH-------HhHHHHHHHcCCcE-EEe
Q 016207 158 IKALADYVHGKGL--KLGIYSDAGVFTC---------------QVRPG--SLFHE-------KDDAPLFASWGVDY-LKY 210 (393)
Q Consensus 158 l~~l~d~vh~~Gm--k~Glw~~pg~~~c---------------~~~pg--s~~~~-------~~~~~~~~~wGvdy-lK~ 210 (393)
+..+.+++|+.|+ |+||=+.|++..+ ..+|| .+.++ ++.-+.+.+.|+++ |-+
T Consensus 105 ~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeV 184 (228)
T PRK08091 105 LALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISI 184 (228)
T ss_pred HHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 7889999999999 9999999986211 23565 33343 33334455668766 777
Q ss_pred ecCCCCCCCccccchHHHHHHHhcCCCceeec
Q 016207 211 DNCFNLGIEPKKRYPPMRDALNETGCSIFYSL 242 (393)
Q Consensus 211 D~~~~~~~~~~~~y~~m~~AL~~agr~i~~sl 242 (393)
|+--.. .. .+.+.++|.++++..
T Consensus 185 DGGI~~--------~t-i~~l~~aGaD~~V~G 207 (228)
T PRK08091 185 DGSMTL--------EL-ASYLKQHQIDWVVSG 207 (228)
T ss_pred ECCCCH--------HH-HHHHHHCCCCEEEEC
Confidence 774332 12 233456788888874
No 148
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=36.25 E-value=65 Score=31.21 Aligned_cols=43 Identities=23% Similarity=0.217 Sum_probs=33.1
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCcEEEeecC
Q 016207 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNC 213 (393)
Q Consensus 159 ~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~~ 213 (393)
+.+++.+|++|+++..|+-.-. -...++.+.++|||.|=.|+-
T Consensus 235 ~~~v~~~~~~Gl~v~~WTv~~n------------~~~~~~~l~~~GVdgIiTD~p 277 (286)
T cd08606 235 PRLIQVVKRSGLVCVSYGVLNN------------DPENAKTQVKAGVDAVIVDSV 277 (286)
T ss_pred hHHHHHHHHCCcEEEEECCccC------------CHHHHHHHHHcCCCEEEECCH
Confidence 5789999999999999974100 013678888999999988864
No 149
>cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation.
Probab=36.20 E-value=63 Score=32.38 Aligned_cols=42 Identities=10% Similarity=-0.042 Sum_probs=35.2
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCcEEEeecCC
Q 016207 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCF 214 (393)
Q Consensus 159 ~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~~~ 214 (393)
+.+++.+|+.|+++.+|+-... ..++.+.++|||.|=-|+..
T Consensus 235 ~~~v~~a~~~Gl~V~vWTVNd~--------------~~~~~l~~~GVDgIiTD~P~ 276 (316)
T cd08610 235 SNDIRDYKAANIHTNVYVINEP--------------WLFSLAWCSGIHSVTTNNIH 276 (316)
T ss_pred HHHHHHHHHCCCEEEEECCCCH--------------HHHHHHHhCCcCEEEeCCHH
Confidence 6889999999999999985432 46788999999999998864
No 150
>PLN00197 beta-amylase; Provisional
Probab=36.07 E-value=57 Score=35.25 Aligned_cols=59 Identities=22% Similarity=0.321 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcCCeEEE
Q 016207 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGI 174 (393)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Gl 174 (393)
.+.+.+.+...+| +.+|++=|.+|.=|...++...+.... +|-+.|++-|++.|||+=.
T Consensus 124 ~~~~~l~~~L~~L-----K~~GVdGVmvDvWWGiVE~~~p~~YdW------sgY~~L~~mvr~~GLKlq~ 182 (573)
T PLN00197 124 NRRKAMKASLQAL-----KSAGVEGIMMDVWWGLVERESPGVYNW------GGYNELLEMAKRHGLKVQA 182 (573)
T ss_pred cCHHHHHHHHHHH-----HHcCCCEEEEeeeeeeeccCCCCcCCc------HHHHHHHHHHHHcCCeEEE
Confidence 4567888888888 778999999986554433332221111 3789999999999999643
No 151
>PLN02161 beta-amylase
Probab=35.93 E-value=57 Score=34.93 Aligned_cols=59 Identities=19% Similarity=0.151 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcCCeEEE
Q 016207 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGI 174 (393)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Gl 174 (393)
-+.+.+.+...+| +.+|++=|.+|.=|...++...+.... +|-+.|++-|++.|||+=.
T Consensus 114 ~~~~al~~~L~~L-----K~~GVdGVmvDVWWGiVE~~~p~~YdW------sgY~~l~~mvr~~GLKlq~ 172 (531)
T PLN02161 114 KRLKALTVSLKAL-----KLAGVHGIAVEVWWGIVERFSPLEFKW------SLYEELFRLISEAGLKLHV 172 (531)
T ss_pred CCHHHHHHHHHHH-----HHcCCCEEEEEeeeeeeecCCCCcCCc------HHHHHHHHHHHHcCCeEEE
Confidence 3456677777777 778999999986554433332211111 3789999999999999643
No 152
>PRK12677 xylose isomerase; Provisional
Probab=35.70 E-value=29 Score=35.71 Aligned_cols=62 Identities=21% Similarity=0.250 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcC--CeEEE
Q 016207 108 TIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKG--LKLGI 174 (393)
Q Consensus 108 ~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~G--mk~Gl 174 (393)
+.+++.+|.+ +++|.+++++=.|+.....+..-++.-.-++|-.+|+.++++.+++| ++++|
T Consensus 114 ~~~~r~IdlA-----~eLGa~~Vvv~~G~~g~~~~~~~d~~~a~~~~~eaL~~l~~~A~~~G~gV~laI 177 (384)
T PRK12677 114 RKVLRNIDLA-----AELGAKTYVMWGGREGAEYDAAKDVRAALDRYREAIDLLAAYVKDQGYDLRFAL 177 (384)
T ss_pred HHHHHHHHHH-----HHhCCCEEEEeeCCCCccCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 4466677777 67899999985555432111111222223455668999999998866 77766
No 153
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=35.65 E-value=68 Score=30.74 Aligned_cols=76 Identities=22% Similarity=0.301 Sum_probs=48.2
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCcccc---------------CCCCc--ccccH-------HhHHHHHHHcCCcE-EEeec
Q 016207 158 IKALADYVHGKGLKLGIYSDAGVFTC---------------QVRPG--SLFHE-------KDDAPLFASWGVDY-LKYDN 212 (393)
Q Consensus 158 l~~l~d~vh~~Gmk~Glw~~pg~~~c---------------~~~pg--s~~~~-------~~~~~~~~~wGvdy-lK~D~ 212 (393)
+..+++++|+.|+|+||=+.|++... ..+|| -+.|+ ++.-+.+.+.|.++ |-+|.
T Consensus 97 ~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDG 176 (229)
T PRK09722 97 AFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDG 176 (229)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 77899999999999999999975210 23455 23343 33334445667765 67776
Q ss_pred CCCCCCCccccchHHHHHHHhcCCCceeec
Q 016207 213 CFNLGIEPKKRYPPMRDALNETGCSIFYSL 242 (393)
Q Consensus 213 ~~~~~~~~~~~y~~m~~AL~~agr~i~~sl 242 (393)
.-.. ..+. .+.++|-++++..
T Consensus 177 GI~~--------~~i~-~~~~aGad~~V~G 197 (229)
T PRK09722 177 SCNQ--------KTYE-KLMEAGADVFIVG 197 (229)
T ss_pred CCCH--------HHHH-HHHHcCCCEEEEC
Confidence 5332 1222 3456788888864
No 154
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=35.41 E-value=73 Score=28.06 Aligned_cols=40 Identities=28% Similarity=0.402 Sum_probs=32.8
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCcEEEeec
Q 016207 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDN 212 (393)
Q Consensus 159 ~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~ 212 (393)
..+++.+|+.|+++.+|+-.. ...++.+.++|||.|=.|+
T Consensus 150 ~~~i~~~~~~g~~v~~wtvn~--------------~~~~~~~~~~GVdgI~TD~ 189 (189)
T cd08556 150 PELVRAAHAAGLKVYVWTVND--------------PEDARRLLALGVDGIITDD 189 (189)
T ss_pred HHHHHHHHHcCCEEEEEcCCC--------------HHHHHHHHHCCCCEEecCC
Confidence 788999999999999997532 3467788899999997764
No 155
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=35.32 E-value=26 Score=35.55 Aligned_cols=60 Identities=23% Similarity=0.356 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEe-CCCcCCCCCCCCCCccccCCCCC-CCHHHHHHHHHHcCCeEEEEee
Q 016207 105 ISETIIKETADALVSTGLAELGYDHVNI-DDCWSSPLRDLKGQLVPDTITFP-SGIKALADYVHGKGLKLGIYSD 177 (393)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~I-DDGW~~~~rd~~G~~~~d~~kFP-~Gl~~l~d~vh~~Gmk~Glw~~ 177 (393)
-+++.+.+.++.| +++|++.|.| .=.|.. +.|.+.+|= +.|..+++.+++.|+++-|-+.
T Consensus 7 ~~~e~~~~d~~~m-----~~~G~n~vri~~~~W~~--------lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~ 68 (374)
T PF02449_consen 7 WPEEEWEEDLRLM-----KEAGFNTVRIGEFSWSW--------LEPEEGQYDFSWLDRVLDLAAKHGIKVILGTP 68 (374)
T ss_dssp S-CCHHHHHHHHH-----HHHT-SEEEE-CCEHHH--------H-SBTTB---HHHHHHHHHHHCTT-EEEEEEC
T ss_pred CCHHHHHHHHHHH-----HHcCCCEEEEEEechhh--------ccCCCCeeecHHHHHHHHHHHhccCeEEEEec
Confidence 4568889999999 7789999997 446753 233333321 1389999999999999988764
No 156
>KOG1066 consensus Glucosidase II catalytic (alpha) subunit and related enzymes, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=35.27 E-value=58 Score=36.32 Aligned_cols=82 Identities=24% Similarity=0.363 Sum_probs=57.6
Q ss_pred CCCCCCce---EE--echhhhCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHH
Q 016207 86 GLASTPQM---GW--NSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKA 160 (393)
Q Consensus 86 ~~~~~pp~---Gw--nSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~ 160 (393)
|....||+ || |-||. -+|+.++..-..+.+ .+..|+.+-||=-. .|..-..+.|+.+||+ .+.
T Consensus 349 G~~~LPplFsiGYHQcRWNY----~DE~DV~~Vd~~FDe---hdiP~DviWLDIEh----tdgKrYFTWDk~~FP~-P~~ 416 (915)
T KOG1066|consen 349 GTTPLPPLFSIGYHQCRWNY----NDEEDVLTVDQGFDE---HDIPYDVIWLDIEH----TDGKRYFTWDKHKFPN-PKD 416 (915)
T ss_pred CCCCCCchhhcchhhccccc----cchhhhhhhhcCccc---cCCccceEEEeeee----cCCceeEeeccccCCC-HHH
Confidence 34455663 33 55542 467777766655544 35567888887433 3334468899999999 999
Q ss_pred HHHHHHHcCCeEEEEeeCC
Q 016207 161 LADYVHGKGLKLGIYSDAG 179 (393)
Q Consensus 161 l~d~vh~~Gmk~Glw~~pg 179 (393)
|.+.|.+||=|+-.=++|-
T Consensus 417 Ml~kLa~kgRklV~IvDPH 435 (915)
T KOG1066|consen 417 MLKKLASKGRKLVTIVDPH 435 (915)
T ss_pred HHHHHHhcCCceEEEeCcc
Confidence 9999999999998888883
No 157
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=35.26 E-value=4.2e+02 Score=25.61 Aligned_cols=66 Identities=21% Similarity=0.254 Sum_probs=41.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHH--cCCeEEEEeeCCc
Q 016207 103 CNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHG--KGLKLGIYSDAGV 180 (393)
Q Consensus 103 ~~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~--~Gmk~Glw~~pg~ 180 (393)
..++.+..+++++.+ .++|+++|-+ |+-.... .-.....+|.+ ..++..-.+. +..++..+..+..
T Consensus 15 ~~f~~~~~~~ia~~L-----~~~GVd~IEv--G~~~~~~----~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~ 82 (266)
T cd07944 15 WDFGDEFVKAIYRAL-----AAAGIDYVEI--GYRSSPE----KEFKGKSAFCD-DEFLRRLLGDSKGNTKIAVMVDYGN 82 (266)
T ss_pred ccCCHHHHHHHHHHH-----HHCCCCEEEe--ecCCCCc----cccCCCccCCC-HHHHHHHHhhhccCCEEEEEECCCC
Confidence 468899999999999 6778888776 6644211 11223356666 3333333232 3688998888753
No 158
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=35.08 E-value=2.4e+02 Score=27.34 Aligned_cols=77 Identities=14% Similarity=0.247 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcCC-eEEEEeeCCccc
Q 016207 104 NISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGL-KLGIYSDAGVFT 182 (393)
Q Consensus 104 ~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gm-k~Glw~~pg~~~ 182 (393)
.++.+.+.+.++.+ ++.|++.|.+= + |.....+ + +..+++++++.|+ ++.|.++. .
T Consensus 39 ~ls~eei~~~i~~~-----~~~gi~~I~~t----G------GEPll~~----~-l~~iv~~l~~~g~~~v~i~TNG-~-- 95 (302)
T TIGR02668 39 ELSPEEIERIVRVA-----SEFGVRKVKIT----G------GEPLLRK----D-LIEIIRRIKDYGIKDVSMTTNG-I-- 95 (302)
T ss_pred cCCHHHHHHHHHHH-----HHcCCCEEEEE----C------ccccccc----C-HHHHHHHHHhCCCceEEEEcCc-h--
Confidence 47889999999887 45577777661 1 3444443 3 7889999999998 77775432 1
Q ss_pred cCCCCcccccHHhHHHHHHHcCCcEEEeec
Q 016207 183 CQVRPGSLFHEKDDAPLFASWGVDYLKYDN 212 (393)
Q Consensus 183 c~~~pgs~~~~~~~~~~~~~wGvdylK~D~ 212 (393)
.+...++.+++.|++.|.+..
T Consensus 96 ---------ll~~~~~~l~~~g~~~v~iSl 116 (302)
T TIGR02668 96 ---------LLEKLAKKLKEAGLDRVNVSL 116 (302)
T ss_pred ---------HHHHHHHHHHHCCCCEEEEEe
Confidence 124566778888988776554
No 159
>cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia
Probab=34.25 E-value=67 Score=32.15 Aligned_cols=41 Identities=10% Similarity=0.076 Sum_probs=34.8
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCcEEEeecC
Q 016207 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNC 213 (393)
Q Consensus 159 ~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~~ 213 (393)
+.+++.+|+.|+++.+|+--.. ..++.+.++|||+|=-|+.
T Consensus 235 ~~~v~~~~~~G~~v~vWTVNd~--------------~~~~~l~~~GVDgIiTD~P 275 (315)
T cd08609 235 ALEIKELRKDNVSVNLWVVNEP--------------WLFSLLWCSGVSSVTTNAC 275 (315)
T ss_pred HHHHHHHHHCCCEEEEECCCCH--------------HHHHHHHhcCCCEEEcCCH
Confidence 6789999999999999986432 4788999999999998874
No 160
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=34.21 E-value=3.8e+02 Score=28.83 Aligned_cols=55 Identities=16% Similarity=0.231 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHc---CCeEEEEee
Q 016207 104 NISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGK---GLKLGIYSD 177 (393)
Q Consensus 104 ~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~---Gmk~Glw~~ 177 (393)
.+|.+.+.+.|+.+ .++|.+.|.|= |.-|-++|. -+..|+..|++. ++.+++.+-
T Consensus 151 ~~t~e~~~~~a~~l-----~~~Gad~I~Ik--------DtaGll~P~------~~~~LV~~Lk~~~~~~ipI~~H~H 208 (499)
T PRK12330 151 IHTVEGFVEQAKRL-----LDMGADSICIK--------DMAALLKPQ------PAYDIVKGIKEACGEDTRINLHCH 208 (499)
T ss_pred CCCHHHHHHHHHHH-----HHcCCCEEEeC--------CCccCCCHH------HHHHHHHHHHHhCCCCCeEEEEeC
Confidence 56899999999988 56788888884 244666666 489999999876 588888763
No 161
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=33.95 E-value=3.3e+02 Score=29.92 Aligned_cols=55 Identities=27% Similarity=0.333 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHH-cCCeEEEEee
Q 016207 104 NISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHG-KGLKLGIYSD 177 (393)
Q Consensus 104 ~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~-~Gmk~Glw~~ 177 (393)
.+|.+.+.+.|+.+ .++|.+.|.|=| .-|-.+|. -+..|+..|++ .++.+++.+-
T Consensus 150 ~~t~e~~~~~ak~l-----~~~Gad~I~IkD--------taG~l~P~------~v~~lv~alk~~~~ipi~~H~H 205 (596)
T PRK14042 150 VHTLDNFLELGKKL-----AEMGCDSIAIKD--------MAGLLTPT------VTVELYAGLKQATGLPVHLHSH 205 (596)
T ss_pred CCCHHHHHHHHHHH-----HHcCCCEEEeCC--------cccCCCHH------HHHHHHHHHHhhcCCEEEEEeC
Confidence 58999999999998 567888888842 44666665 38999999985 4788888763
No 162
>PLN02705 beta-amylase
Probab=33.84 E-value=61 Score=35.51 Aligned_cols=59 Identities=20% Similarity=0.236 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcCCeEEE
Q 016207 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGI 174 (393)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Gl 174 (393)
.+.+.+.+...+| +.+|++=|.+|.=|...++...+.... +|-+.|++-|++.|||+=.
T Consensus 265 ~~~~al~a~L~aL-----K~aGVdGVmvDVWWGiVE~~~P~~YdW------sgY~~L~~mvr~~GLKlqv 323 (681)
T PLN02705 265 VDPEGVRQELSHM-----KSLNVDGVVVDCWWGIVEGWNPQKYVW------SGYRELFNIIREFKLKLQV 323 (681)
T ss_pred cCHHHHHHHHHHH-----HHcCCCEEEEeeeeeEeecCCCCcCCc------HHHHHHHHHHHHcCCeEEE
Confidence 4668888888888 778999999985554433322111111 3789999999999999643
No 163
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=33.39 E-value=1.2e+02 Score=30.72 Aligned_cols=116 Identities=18% Similarity=0.195 Sum_probs=64.4
Q ss_pred cccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcCCeEEE-------EeeCCccccCCCCc-------
Q 016207 123 AELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGI-------YSDAGVFTCQVRPG------- 188 (393)
Q Consensus 123 ~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Gl-------w~~pg~~~c~~~pg------- 188 (393)
+..|++||-|- -|-. .+|.+|.-.---..=-.+.-++++..+.+|||+-+ |.+|+. ...|.
T Consensus 73 K~~GvNyvRlR-vwnd-P~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPak---Q~kPkaW~~l~f 147 (403)
T COG3867 73 KNHGVNYVRLR-VWND-PYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAK---QKKPKAWENLNF 147 (403)
T ss_pred HHcCcCeEEEE-EecC-CccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccChhh---cCCcHHhhhcCH
Confidence 67799998885 6765 45554331110000001367889999999999875 445553 22332
Q ss_pred ------ccccHHhHHHHHHHcCCc--EEEeecCCCCCC---Ccc-ccchHHHHHH-------HhcCCCceeecc
Q 016207 189 ------SLFHEKDDAPLFASWGVD--YLKYDNCFNLGI---EPK-KRYPPMRDAL-------NETGCSIFYSLC 243 (393)
Q Consensus 189 ------s~~~~~~~~~~~~~wGvd--ylK~D~~~~~~~---~~~-~~y~~m~~AL-------~~agr~i~~slc 243 (393)
.+.|-+..+.+++.-||+ .|.+-+-...++ +.+ ..+.+|...| +...+.|.+.++
T Consensus 148 e~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~p~ikv~lH 221 (403)
T COG3867 148 EQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVSPTIKVALH 221 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcCCCceEEEE
Confidence 345666777889988874 455544333322 121 2555665544 344455555543
No 164
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=32.97 E-value=3.9e+02 Score=24.51 Aligned_cols=93 Identities=15% Similarity=0.145 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCC--CCCCCCCccccCCCCCCCHHHHHHHHHH-cCCeEEEEeeCCcc
Q 016207 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSP--LRDLKGQLVPDTITFPSGIKALADYVHG-KGLKLGIYSDAGVF 181 (393)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~--~rd~~G~~~~d~~kFP~Gl~~l~d~vh~-~Gmk~Glw~~pg~~ 181 (393)
-+.+.+.+.|+.+ +++|++-|.|-.|--.. ..|.+|.-..+..+| +..+++.+++ .++.+.+-...+..
T Consensus 64 ~~~~~~~~aa~~~-----~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~---~~eii~~v~~~~~~~v~vk~r~~~~ 135 (231)
T cd02801 64 SDPETLAEAAKIV-----EELGADGIDLNMGCPSPKVTKGGAGAALLKDPEL---VAEIVRAVREAVPIPVTVKIRLGWD 135 (231)
T ss_pred CCHHHHHHHHHHH-----HhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHH---HHHHHHHHHHhcCCCEEEEEeeccC
Confidence 3578888888887 56788888887664211 123444333332222 6778888864 34444444333221
Q ss_pred ccCCCCcccccHHhHHHHHHHcCCcEEEeec
Q 016207 182 TCQVRPGSLFHEKDDAPLFASWGVDYLKYDN 212 (393)
Q Consensus 182 ~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~ 212 (393)
+ ..-....++.+.+.|+|+|.+..
T Consensus 136 -----~--~~~~~~~~~~l~~~Gvd~i~v~~ 159 (231)
T cd02801 136 -----D--EEETLELAKALEDAGASALTVHG 159 (231)
T ss_pred -----C--chHHHHHHHHHHHhCCCEEEECC
Confidence 0 02334567888999999998754
No 165
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=32.82 E-value=78 Score=32.07 Aligned_cols=75 Identities=17% Similarity=0.105 Sum_probs=52.3
Q ss_pred HHHHHHHHHcCCeE-EEEeeCC---cccc----CC-CCcccccHHhHHHHHHHcCCcEEEeecCCCC-CCCccccchHHH
Q 016207 159 KALADYVHGKGLKL-GIYSDAG---VFTC----QV-RPGSLFHEKDDAPLFASWGVDYLKYDNCFNL-GIEPKKRYPPMR 228 (393)
Q Consensus 159 ~~l~d~vh~~Gmk~-Glw~~pg---~~~c----~~-~pgs~~~~~~~~~~~~~wGvdylK~D~~~~~-~~~~~~~y~~m~ 228 (393)
..+++..|+.|+|+ |.-+.+. ...| .. ..+.+.+.+..++..+.+|||.+=+|+=... .....+++..+.
T Consensus 49 ~~~idaAHknGV~Vlgti~~e~~~~~~~~~~lL~~~~~~~~~~a~kLv~lak~yGfDGw~iN~E~~~~~~~~~~~l~~F~ 128 (339)
T cd06547 49 ADWINAAHRNGVPVLGTFIFEWTGQVEWLEDFLKKDEDGSFPVADKLVEVAKYYGFDGWLINIETELGDAEKAKRLIAFL 128 (339)
T ss_pred cHHHHHHHhcCCeEEEEEEecCCCchHHHHHHhccCcccchHHHHHHHHHHHHhCCCceEeeeeccCCcHHHHHHHHHHH
Confidence 78899999999995 5444332 2223 23 4567778899999999999999999996654 333345666666
Q ss_pred HHHHh
Q 016207 229 DALNE 233 (393)
Q Consensus 229 ~AL~~ 233 (393)
+.|.+
T Consensus 129 ~~L~~ 133 (339)
T cd06547 129 RYLKA 133 (339)
T ss_pred HHHHH
Confidence 66643
No 166
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=32.76 E-value=2.2e+02 Score=27.07 Aligned_cols=76 Identities=14% Similarity=0.195 Sum_probs=47.2
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCcccc---------------CCCCc--ccccHHhH---HHHH----HHcCCcE-EEeec
Q 016207 158 IKALADYVHGKGLKLGIYSDAGVFTC---------------QVRPG--SLFHEKDD---APLF----ASWGVDY-LKYDN 212 (393)
Q Consensus 158 l~~l~d~vh~~Gmk~Glw~~pg~~~c---------------~~~pg--s~~~~~~~---~~~~----~~wGvdy-lK~D~ 212 (393)
+..+.+++|+.|+|+||=+.|++..+ ..+|| .+.|+... ++.+ .+.|.++ |-+|+
T Consensus 99 ~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDG 178 (223)
T PRK08745 99 VHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDG 178 (223)
T ss_pred HHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEEC
Confidence 78899999999999999999986211 23565 34454322 2333 3446654 66666
Q ss_pred CCCCCCCccccchHHHHHHHhcCCCceeec
Q 016207 213 CFNLGIEPKKRYPPMRDALNETGCSIFYSL 242 (393)
Q Consensus 213 ~~~~~~~~~~~y~~m~~AL~~agr~i~~sl 242 (393)
.-.. .-...+.++|.++++..
T Consensus 179 GI~~---------eti~~l~~aGaDi~V~G 199 (223)
T PRK08745 179 GVKA---------DNIGAIAAAGADTFVAG 199 (223)
T ss_pred CCCH---------HHHHHHHHcCCCEEEEC
Confidence 4321 22334456788888874
No 167
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=32.76 E-value=81 Score=30.13 Aligned_cols=83 Identities=14% Similarity=0.157 Sum_probs=50.4
Q ss_pred CCCCCCCHHHHHHHHHHcCCeEEEEeeCCccc---------c------CCCCc--ccccHHhHH---HHHHHcCCc----
Q 016207 151 TITFPSGIKALADYVHGKGLKLGIYSDAGVFT---------C------QVRPG--SLFHEKDDA---PLFASWGVD---- 206 (393)
Q Consensus 151 ~~kFP~Gl~~l~d~vh~~Gmk~Glw~~pg~~~---------c------~~~pg--s~~~~~~~~---~~~~~wGvd---- 206 (393)
.+.-|+ +..+++++|+.|+|.||=+.|++.. + ..+|| .+.++.... +.++++--+
T Consensus 92 ~E~~~~-~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~ 170 (220)
T COG0036 92 AEATEH-IHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLDI 170 (220)
T ss_pred eccCcC-HHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECCCCcccccCHHHHHHHHHHHHHhcccCCe
Confidence 333444 8999999999999999999998621 1 24675 455664333 334444332
Q ss_pred EEEeecCCCCCCCccccchHHHHHHHhcCCCceeecc
Q 016207 207 YLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYSLC 243 (393)
Q Consensus 207 ylK~D~~~~~~~~~~~~y~~m~~AL~~agr~i~~slc 243 (393)
-|-+|.--. ..-...+.++|.++++..+
T Consensus 171 ~IeVDGGI~---------~~t~~~~~~AGad~~VaGS 198 (220)
T COG0036 171 LIEVDGGIN---------LETIKQLAAAGADVFVAGS 198 (220)
T ss_pred EEEEeCCcC---------HHHHHHHHHcCCCEEEEEE
Confidence 244554322 1223445667888888754
No 168
>PLN02877 alpha-amylase/limit dextrinase
Probab=32.65 E-value=1.5e+02 Score=34.48 Aligned_cols=86 Identities=21% Similarity=0.223 Sum_probs=51.9
Q ss_pred HHHHHHHHHHcCCeEEEEee--------------------CCc------------cccCCC-----CcccccHHhHHHHH
Q 016207 158 IKALADYVHGKGLKLGIYSD--------------------AGV------------FTCQVR-----PGSLFHEKDDAPLF 200 (393)
Q Consensus 158 l~~l~d~vh~~Gmk~Glw~~--------------------pg~------------~~c~~~-----pgs~~~~~~~~~~~ 200 (393)
+|.|++.+|+.||++-+=+- |++ .+|..+ |-+..++-..++.+
T Consensus 468 fk~mV~~lH~~GI~VImDVVyNHt~~~g~~~~~s~ld~~vP~YY~r~~~~G~~~ns~c~n~~Ase~~mvrklIlDsl~yW 547 (970)
T PLN02877 468 FRKMVQALNRIGLRVVLDVVYNHLHSSGPFDENSVLDKIVPGYYLRRNSDGFIENSTCVNNTASEHYMVDRLIVDDLLNW 547 (970)
T ss_pred HHHHHHHHHHCCCEEEEEECCccccCCCCcchhhcccCCCCCceEEECCCCCcccCCccCCCccCCHHHHHHHHHHHHHH
Confidence 99999999999999754321 111 123222 22334443344444
Q ss_pred -HHcCCcEEEeecCCCCCCCccccchHHHHHHHhc--------CCCceeeccCCC
Q 016207 201 -ASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNET--------GCSIFYSLCEWG 246 (393)
Q Consensus 201 -~~wGvdylK~D~~~~~~~~~~~~y~~m~~AL~~a--------gr~i~~slc~~g 246 (393)
+++|||.+.+|-...-... ....++++|++. |+.|++-.-.|.
T Consensus 548 ~~ey~VDGFRFDlmg~i~~~---tm~~~~~~L~~i~~~~~~~dg~~i~lyGEgW~ 599 (970)
T PLN02877 548 AVNYKVDGFRFDLMGHLMKR---TMVRAKDALQSLTLERDGVDGSSIYLYGEGWD 599 (970)
T ss_pred HHHhCCCEEEEEccccccHH---HHHHHHHHHHHHhhhhcccCCCceEEEEeCCC
Confidence 4899999999998764332 223455555443 577877655664
No 169
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=32.62 E-value=78 Score=30.42 Aligned_cols=39 Identities=18% Similarity=0.301 Sum_probs=31.4
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHH-cCCcEEEeec
Q 016207 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFAS-WGVDYLKYDN 212 (393)
Q Consensus 159 ~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~-wGvdylK~D~ 212 (393)
+.+++.+|+.|+++.+|+--.. ..++.+.+ +||| |=-|+
T Consensus 218 ~~~v~~~~~~G~~v~vWTVn~~--------------~~~~~l~~~~GVd-iiTD~ 257 (258)
T cd08573 218 SAYVRYWRARGIRVIAWTVNTP--------------TEKQYFAKTLNVP-YITDS 257 (258)
T ss_pred HHHHHHHHHCCCEEEEEecCCH--------------HHHHHHHHHhCCC-eecCC
Confidence 5789999999999999985422 36778888 9999 76665
No 170
>PRK13491 chemoreceptor glutamine deamidase CheD; Provisional
Probab=32.38 E-value=48 Score=31.21 Aligned_cols=56 Identities=16% Similarity=0.191 Sum_probs=41.9
Q ss_pred HHHHHhcCChhhHhhcCCCCCCcceEeeeeccCCceEEEEccCCC--------------eEEE-EeccCCC
Q 016207 336 AETFEILSNKEVIAVNQDPLGVQGRKVFGWVLCLDIAWWLLSGID--------------VQKL-KLSQHNG 391 (393)
Q Consensus 336 ~~~~~lL~N~eviainQD~lg~~~~~v~~~~~~~d~~~w~~~~~~--------------~~~~-~~~~~~~ 391 (393)
+..+++|....+-=+.+|-.|..++.|.-++..+++.+..+..+- -.|. +|.|||.
T Consensus 118 e~a~~~L~~~GI~ivaeDvGG~~gRkI~f~~~tG~v~vk~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 188 (199)
T PRK13491 118 AFARRYLRDEGIRCTAHSLGGNRARRIRFWPKTGRVQQMFLGSEDVVPNEQPQFRLQGGAGDVTFFDRHNN 188 (199)
T ss_pred HHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEEEEEEcCCCccccccccccCcccccccceeecccCC
Confidence 346677887777777899899999999999888877776533333 3344 9999995
No 171
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=32.33 E-value=1.7e+02 Score=26.71 Aligned_cols=103 Identities=15% Similarity=0.087 Sum_probs=56.2
Q ss_pred cccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHH
Q 016207 123 AELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFAS 202 (393)
Q Consensus 123 ~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~ 202 (393)
+..|+++++|-. .+. .| ..|+ -...-.+.+++.||+.|+|.-+-.. + .....+-.+..++.++.
T Consensus 19 k~~g~~fv~ika-teg-----~~--~~D~-----~f~~n~~~A~~aGl~~G~Yhf~~~~-~--~~~~~~Qa~~f~~~~~~ 82 (196)
T cd06416 19 KNNGYSFAIIRA-YRS-----NG--SFDP-----NSVTNIKNARAAGLSTDVYFFPCIN-C--CGSAAGQVQTFLQYLKA 82 (196)
T ss_pred HhCCceEEEEEE-Ecc-----CC--ccCh-----HHHHHHHHHHHcCCccceEEEecCC-C--CCCHHHHHHHHHHHHHh
Confidence 456888888863 221 11 1453 2677778899999999999876221 1 01223333445566666
Q ss_pred cCCc--EEEeecCCCCCC---Cc---cccchHHHHHHHhcCCCceee
Q 016207 203 WGVD--YLKYDNCFNLGI---EP---KKRYPPMRDALNETGCSIFYS 241 (393)
Q Consensus 203 wGvd--ylK~D~~~~~~~---~~---~~~y~~m~~AL~~agr~i~~s 241 (393)
.+.+ .|-+|.-..... +. ......+.+.+++.|.++++-
T Consensus 83 ~~~~~~~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iY 129 (196)
T cd06416 83 NGIKYGTVWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGIY 129 (196)
T ss_pred CCCceeEEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 6654 344665432111 11 122345566666668654443
No 172
>PRK09936 hypothetical protein; Provisional
Probab=32.18 E-value=93 Score=31.04 Aligned_cols=62 Identities=24% Similarity=0.465 Sum_probs=46.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCC--CC-HHHHHHHHHHcCCe--EEEEee
Q 016207 103 CNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFP--SG-IKALADYVHGKGLK--LGIYSD 177 (393)
Q Consensus 103 ~~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP--~G-l~~l~d~vh~~Gmk--~Glw~~ 177 (393)
.+++.+.......++ ++.|++.+++ -|..- .++ .|+ +| |..+.+..+++||+ +|||++
T Consensus 33 ~~~~~~qWq~~~~~~-----~~~G~~tLiv--QWt~y-G~~---------~fg~~~g~La~~l~~A~~~Gl~v~vGL~~D 95 (296)
T PRK09936 33 SQVTDTQWQGLWSQL-----RLQGFDTLVV--QWTRY-GDA---------DFGGQRGWLAKRLAAAQQAGLKLVVGLYAD 95 (296)
T ss_pred CCCCHHHHHHHHHHH-----HHcCCcEEEE--Eeeec-cCC---------CcccchHHHHHHHHHHHHcCCEEEEcccCC
Confidence 468899999999988 6778889888 47552 332 232 23 78888888999998 799999
Q ss_pred CCcc
Q 016207 178 AGVF 181 (393)
Q Consensus 178 pg~~ 181 (393)
|.+.
T Consensus 96 p~y~ 99 (296)
T PRK09936 96 PEFF 99 (296)
T ss_pred hHHH
Confidence 9763
No 173
>cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers both the N-and C-terminal barrel, and some single-barrel sequences, mostly from Archaea. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains from both barrels contribute to the binding o
Probab=32.02 E-value=1.7e+02 Score=28.59 Aligned_cols=74 Identities=20% Similarity=0.188 Sum_probs=44.8
Q ss_pred CCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHH-cCCeEEEEeeCCccccCCCCcccccHHhHHHH
Q 016207 121 GLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHG-KGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPL 199 (393)
Q Consensus 121 gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~-~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~ 199 (393)
-|.++|..+++|||--...... + .+..-| -.+.+.+.+++ .|..++| ..|.. .....
T Consensus 159 ~l~~~G~~~iqidEP~l~~~~~--s----~~~~~~-~~~~~~~~~~~~~~~~~~l------Hic~~---------~~~~~ 216 (321)
T cd03310 159 ELKNRGIVVVQIDEPSLGAVGA--G----AFEDLE-IVDAALEEVSLKSGGDVEV------HLCAP---------LDYEA 216 (321)
T ss_pred HHHhcCCcEEEeCCCccccccc--c----ccchHH-HHHHHHHHHhhccCCceEE------EECCC---------CCHHH
Confidence 3477899999999865442111 1 000111 25667777765 4444555 34532 34566
Q ss_pred HHHcCCcEEEeecCCCC
Q 016207 200 FASWGVDYLKYDNCFNL 216 (393)
Q Consensus 200 ~~~wGvdylK~D~~~~~ 216 (393)
+.+.|+|.|-+|++...
T Consensus 217 l~~~~vd~l~~D~~~~~ 233 (321)
T cd03310 217 LLELGVDVIGFDAAALP 233 (321)
T ss_pred HHhCCCCEEEEecccCc
Confidence 77889999999998654
No 174
>PLN03244 alpha-amylase; Provisional
Probab=31.93 E-value=53 Score=37.17 Aligned_cols=59 Identities=17% Similarity=0.173 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHHcCCeEEEEeeCC---------------cc---------------cc----CCCCcccccHHhHHHH-
Q 016207 155 PSGIKALADYVHGKGLKLGIYSDAG---------------VF---------------TC----QVRPGSLFHEKDDAPL- 199 (393)
Q Consensus 155 P~Gl~~l~d~vh~~Gmk~Glw~~pg---------------~~---------------~c----~~~pgs~~~~~~~~~~- 199 (393)
|+.||.|+|.+|++||++=|=+-+. .. .| .++|+++.|+-..++.
T Consensus 440 PeDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna~yW 519 (872)
T PLN03244 440 PDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNLNWW 519 (872)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHHHHHH
Confidence 5579999999999999875432210 00 01 1345566666555555
Q ss_pred HHHcCCcEEEeecC
Q 016207 200 FASWGVDYLKYDNC 213 (393)
Q Consensus 200 ~~~wGvdylK~D~~ 213 (393)
+.+++||.+.+|..
T Consensus 520 leEyhIDGFRfDaV 533 (872)
T PLN03244 520 ITEYQIDGFQFHSL 533 (872)
T ss_pred HHHhCcCcceeecc
Confidence 46999999999976
No 175
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=31.85 E-value=3.6e+02 Score=25.64 Aligned_cols=126 Identities=13% Similarity=0.082 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHc-CCeEEEEeeCCccccCCC
Q 016207 108 TIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGK-GLKLGIYSDAGVFTCQVR 186 (393)
Q Consensus 108 ~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~-Gmk~Glw~~pg~~~c~~~ 186 (393)
..+.+..+.+ +++||+++.|+-+.... ..... .=+..++.+.+.+.+. |+.+.+-..-....+...
T Consensus 10 ~~l~~~l~~a-----~~~G~d~vEl~~~~~~~------~~~~~--~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 76 (279)
T cd00019 10 FGLENALKRA-----KEIGFDTVAMFLGNPRS------WLSRP--LKKERAEKFKAIAEEGPSICLSVHAPYLINLASPD 76 (279)
T ss_pred ccHHHHHHHH-----HHcCCCEEEEEcCCCCc------cCCCC--CCHHHHHHHHHHHHHcCCCcEEEEcCceeccCCCC
Confidence 4556677777 67789898876433210 00000 0023588999999888 888765321100111111
Q ss_pred C----cccccHHhHHHHHHHcCCcEEEeecCCCCCCCccccchHHHHHH-------HhcCCCceeeccCCC
Q 016207 187 P----GSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDAL-------NETGCSIFYSLCEWG 246 (393)
Q Consensus 187 p----gs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~AL-------~~agr~i~~slc~~g 246 (393)
| .+.++++..++..++.|.+++-+-.-........+.+..+.+.+ ++.|-.+.++.+.+.
T Consensus 77 ~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~~~ 147 (279)
T cd00019 77 KEKREKSIERLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVVIALETMAGQ 147 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCC
Confidence 2 23445566778888999999977443322222233343333333 234556667666543
No 176
>cd08604 GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 2 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play important an role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP
Probab=31.82 E-value=1.2e+02 Score=29.84 Aligned_cols=54 Identities=9% Similarity=-0.047 Sum_probs=35.8
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCCccc--ccHHhHHHHHHHcCCcEEEeecCC
Q 016207 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSL--FHEKDDAPLFASWGVDYLKYDNCF 214 (393)
Q Consensus 159 ~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~--~~~~~~~~~~~~wGvdylK~D~~~ 214 (393)
+.+++.+|+.|+++-+|+--... ..-+..+ ...+...+.+.++|||+|=-|+-.
T Consensus 240 ~~~v~~a~~~Gl~v~vwTvn~~~--~~~~~~~~~~~~~~~~~~~~~~GVdgIiTD~P~ 295 (300)
T cd08604 240 TNVVEKLQSANLTVYVEVLRNEF--VSLAFDFFADPTVEINSYVQGAGVDGFITEFPA 295 (300)
T ss_pred hHHHHHHHHCCCEEEEEEecCCc--cccchhccCCHHHHHHHHHHHcCCCEEEecCch
Confidence 47999999999999999753210 0001111 122445677889999999998753
No 177
>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip
Probab=31.76 E-value=96 Score=29.04 Aligned_cols=40 Identities=20% Similarity=0.230 Sum_probs=33.2
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCcEEEeec
Q 016207 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDN 212 (393)
Q Consensus 159 ~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~ 212 (393)
+.+++.+|++|+++-.|+--.. ..++.+.++|||.|=-|+
T Consensus 194 ~~~v~~~~~~gl~v~~wTvn~~--------------~~~~~l~~~gvdgiiTD~ 233 (234)
T cd08570 194 QAFLPELKKNGKKVFVWTVNTE--------------EDMRYAIRLGVDGVITDD 233 (234)
T ss_pred HHHHHHHHHCCCEEEEEecCCH--------------HHHHHHHHCCCCEEEeCC
Confidence 7899999999999999985422 367788899999998775
No 178
>PRK15108 biotin synthase; Provisional
Probab=31.43 E-value=1.9e+02 Score=29.17 Aligned_cols=81 Identities=19% Similarity=0.282 Sum_probs=52.4
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccccC
Q 016207 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQ 184 (393)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Glw~~pg~~~c~ 184 (393)
++.++|.+.|..+ ++.|+..|.+=-+|.. . ....|. -+..+++.+++.|+...+ ..|.
T Consensus 76 ls~eEI~~~a~~~-----~~~G~~~i~i~~~g~~----p------~~~~~e-~i~~~i~~ik~~~i~v~~--s~G~---- 133 (345)
T PRK15108 76 MEVEQVLESARKA-----KAAGSTRFCMGAAWKN----P------HERDMP-YLEQMVQGVKAMGLETCM--TLGT---- 133 (345)
T ss_pred CCHHHHHHHHHHH-----HHcCCCEEEEEecCCC----C------CcchHH-HHHHHHHHHHhCCCEEEE--eCCc----
Confidence 7889999999988 4567778877545521 1 001122 378888888887765432 1221
Q ss_pred CCCcccccHHhHHHHHHHcCCcEEEeecCC
Q 016207 185 VRPGSLFHEKDDAPLFASWGVDYLKYDNCF 214 (393)
Q Consensus 185 ~~pgs~~~~~~~~~~~~~wGvdylK~D~~~ 214 (393)
.. .+.++.|++.|+|.+-++.-.
T Consensus 134 -----ls--~e~l~~LkeAGld~~n~~leT 156 (345)
T PRK15108 134 -----LS--ESQAQRLANAGLDYYNHNLDT 156 (345)
T ss_pred -----CC--HHHHHHHHHcCCCEEeecccc
Confidence 21 567888999999987665543
No 179
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=30.84 E-value=1.1e+02 Score=34.63 Aligned_cols=98 Identities=14% Similarity=0.132 Sum_probs=57.2
Q ss_pred HHHHHHHHHcCCcccCceEEEeCCCcCCC-----CCCCCCCccccCCCC--CCCHHHHHHHHHHcCCeEEEEeeCC----
Q 016207 111 KETADALVSTGLAELGYDHVNIDDCWSSP-----LRDLKGQLVPDTITF--PSGIKALADYVHGKGLKLGIYSDAG---- 179 (393)
Q Consensus 111 ~~~ad~~~~~gl~~~G~~~~~IDDGW~~~-----~rd~~G~~~~d~~kF--P~Gl~~l~d~vh~~Gmk~Glw~~pg---- 179 (393)
.+.++.+ +++||+.|.|=-=.... .-+..+...++ .+| |+.+|.|++.+|++||++=|=+-+.
T Consensus 254 ~~~L~yl-----k~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~-~~~Gtp~dlk~LVd~aH~~GI~VilDvV~nH~~~ 327 (758)
T PLN02447 254 DDVLPRI-----KALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVS-SRSGTPEDLKYLIDKAHSLGLRVLMDVVHSHASK 327 (758)
T ss_pred HHHHHHH-----HHcCCCEEEECCccccCCCCCCCcCcccCcccc-cccCCHHHHHHHHHHHHHCCCEEEEEeccccccc
Confidence 3456776 78899998763222110 11112223344 345 4569999999999999976433221
Q ss_pred -----------ccc-----------------c--CCCCcccccHHhHHHHH-HHcCCcEEEeecCC
Q 016207 180 -----------VFT-----------------C--QVRPGSLFHEKDDAPLF-ASWGVDYLKYDNCF 214 (393)
Q Consensus 180 -----------~~~-----------------c--~~~pgs~~~~~~~~~~~-~~wGvdylK~D~~~ 214 (393)
... | ..+|.++.|+...++.+ .+++||.+.+|...
T Consensus 328 ~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV~ 393 (758)
T PLN02447 328 NTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGVT 393 (758)
T ss_pred cccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhCcccccccchh
Confidence 000 1 12344555665555554 57999999999753
No 180
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=30.52 E-value=4.8e+02 Score=27.75 Aligned_cols=55 Identities=24% Similarity=0.320 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHH-cCCeEEEEee
Q 016207 104 NISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHG-KGLKLGIYSD 177 (393)
Q Consensus 104 ~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~-~Gmk~Glw~~ 177 (393)
.++.+.+.+.|+.+ .++|.+.|.|= |..|-.+|. -+..|+..+++ .++.+++.+-
T Consensus 149 ~~t~e~~~~~a~~l-----~~~Gad~I~i~--------Dt~G~l~P~------~v~~Lv~~lk~~~~vpI~~H~H 204 (467)
T PRK14041 149 VHTLEYYLEFAREL-----VDMGVDSICIK--------DMAGLLTPK------RAYELVKALKKKFGVPVEVHSH 204 (467)
T ss_pred CCCHHHHHHHHHHH-----HHcCCCEEEEC--------CccCCcCHH------HHHHHHHHHHHhcCCceEEEec
Confidence 56889999999988 56688888773 344666555 48899999875 3777887763
No 181
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=30.36 E-value=93 Score=27.77 Aligned_cols=44 Identities=27% Similarity=0.417 Sum_probs=30.0
Q ss_pred ccCceEEEeCCCcCCCCCCCCCCccc-cC-CCCCCCHHHHHHHHHHcCCeEEEEee
Q 016207 124 ELGYDHVNIDDCWSSPLRDLKGQLVP-DT-ITFPSGIKALADYVHGKGLKLGIYSD 177 (393)
Q Consensus 124 ~~G~~~~~IDDGW~~~~rd~~G~~~~-d~-~kFP~Gl~~l~d~vh~~Gmk~Glw~~ 177 (393)
+.|+..+++|-. |.+.. +. ..|| |+..+.++++++|++++|=++
T Consensus 22 ~~~v~~vv~D~D---------gtl~~~~~~~~~p-gv~e~L~~Lk~~g~~l~I~Sn 67 (170)
T TIGR01668 22 KVGIKGVVLDKD---------NTLVYPDHNEAYP-ALRDWIEELKAAGRKLLIVSN 67 (170)
T ss_pred HCCCCEEEEecC---------CccccCCCCCcCh-hHHHHHHHHHHcCCEEEEEeC
Confidence 357888888831 22222 12 2344 699999999999999998655
No 182
>PLN02905 beta-amylase
Probab=30.34 E-value=76 Score=34.89 Aligned_cols=59 Identities=20% Similarity=0.206 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcCCeEEE
Q 016207 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGI 174 (393)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Gl 174 (393)
.+.+.+.+...+| +.+|++=|.+|.=|...++...+.... +|-+.|++-|++.|||+=.
T Consensus 283 ~~~~al~a~L~aL-----K~aGVdGVmvDVWWGiVE~~gP~~YdW------sgY~~L~~mvr~~GLKlqv 341 (702)
T PLN02905 283 ADPDGLLKQLRIL-----KSINVDGVKVDCWWGIVEAHAPQEYNW------NGYKRLFQMVRELKLKLQV 341 (702)
T ss_pred cCHHHHHHHHHHH-----HHcCCCEEEEeeeeeeeecCCCCcCCc------HHHHHHHHHHHHcCCeEEE
Confidence 4567788888888 778999999985554333322111111 3789999999999999643
No 183
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=30.05 E-value=1.6e+02 Score=36.36 Aligned_cols=71 Identities=15% Similarity=0.122 Sum_probs=50.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCC----CC--CCCHHHHHHHHHHcCCeEEEEe
Q 016207 103 CNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTI----TF--PSGIKALADYVHGKGLKLGIYS 176 (393)
Q Consensus 103 ~~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~----kF--P~Gl~~l~d~vh~~Gmk~Glw~ 176 (393)
...+-+.+.+.++.+ +++|++.+-|=--+........|+.+.|.. .| ..+++.|++.+|++||++-|=+
T Consensus 753 ~~~tf~~~~~~l~Yl-----~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDi 827 (1693)
T PRK14507 753 KDFTFADAEAILPYL-----AALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDI 827 (1693)
T ss_pred CCCCHHHHHHHhHHH-----HHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 468889999999999 788999998866665322222354444432 22 1369999999999999987755
Q ss_pred eC
Q 016207 177 DA 178 (393)
Q Consensus 177 ~p 178 (393)
-|
T Consensus 828 V~ 829 (1693)
T PRK14507 828 VP 829 (1693)
T ss_pred cc
Confidence 44
No 184
>PLN02389 biotin synthase
Probab=29.87 E-value=2.5e+02 Score=28.91 Aligned_cols=81 Identities=17% Similarity=0.242 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccccC
Q 016207 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQ 184 (393)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Glw~~pg~~~c~ 184 (393)
++.++|++.|+.+ ++.|+..|+|=..|-. ..+. +..|+. +..+++.+++.|+.+. ...
T Consensus 116 Ls~EeIl~~a~~~-----~~~G~~~~~ivts~rg----~~~e----~~~~e~-i~eiir~ik~~~l~i~--~s~------ 173 (379)
T PLN02389 116 MSKDDVLEAAKRA-----KEAGSTRFCMGAAWRD----TVGR----KTNFNQ-ILEYVKEIRGMGMEVC--CTL------ 173 (379)
T ss_pred CCHHHHHHHHHHH-----HHcCCCEEEEEecccC----CCCC----hhHHHH-HHHHHHHHhcCCcEEE--ECC------
Confidence 7899999999988 4457777777434422 1111 012333 7778888887665532 222
Q ss_pred CCCcccccH-HhHHHHHHHcCCcEEEeecC
Q 016207 185 VRPGSLFHE-KDDAPLFASWGVDYLKYDNC 213 (393)
Q Consensus 185 ~~pgs~~~~-~~~~~~~~~wGvdylK~D~~ 213 (393)
+.+ ++.++.|++.|+|.+-++.-
T Consensus 174 ------G~l~~E~l~~LkeAGld~~~~~Le 197 (379)
T PLN02389 174 ------GMLEKEQAAQLKEAGLTAYNHNLD 197 (379)
T ss_pred ------CCCCHHHHHHHHHcCCCEEEeeec
Confidence 223 56789999999999877654
No 185
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=29.27 E-value=1.1e+02 Score=30.43 Aligned_cols=85 Identities=21% Similarity=0.209 Sum_probs=52.6
Q ss_pred cccCceEEEeCCCcCCCCCCCCCCccccCCC-----CCCCHHHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHH
Q 016207 123 AELGYDHVNIDDCWSSPLRDLKGQLVPDTIT-----FPSGIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDA 197 (393)
Q Consensus 123 ~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~k-----FP~Gl~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~ 197 (393)
.++|.+.|+++|.|.... ..+++- .|. ++.+++.+|++ .+.|++ |. ......
T Consensus 190 ~~aGad~I~i~d~~a~~~-------~lsp~~f~ef~~p~-~~~i~~~i~~~--~~ilH~------cG-------~~~~~l 246 (339)
T PRK06252 190 LEAGADVICIADPSASPE-------LLGPKMFEEFVLPY-LNKIIDEVKGL--PTILHI------CG-------DLTSIL 246 (339)
T ss_pred HHcCCCEEEeCCCCcccc-------ccCHHHHHHHHHHH-HHHHHHHhccC--CcEEEE------CC-------CchHHH
Confidence 567999999999996521 112222 234 78999999876 444433 42 123456
Q ss_pred HHHHHcCCcEEEeecCCCCCCCccccchHHHHHHHhcCCCceee
Q 016207 198 PLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYS 241 (393)
Q Consensus 198 ~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~AL~~agr~i~~s 241 (393)
..+.+.|+|-+-+|... .+.++.+..|..+.+.
T Consensus 247 ~~~~~~g~d~~~~d~~~-----------dl~~~~~~~g~~~~i~ 279 (339)
T PRK06252 247 EEMADCGFDGISIDEKV-----------DVKTAKENVGDRAALI 279 (339)
T ss_pred HHHHhcCCCeeccCCCC-----------CHHHHHHHhCCCeEEE
Confidence 77888999998877652 2445555556555443
No 186
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=28.91 E-value=1.3e+02 Score=29.40 Aligned_cols=73 Identities=15% Similarity=0.085 Sum_probs=47.1
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCc---c------ccCCCCccc-ccHHhHHHHHHHcCCcEEEeecCCCCCCCccccchHH
Q 016207 158 IKALADYVHGKGLKLGIYSDAGV---F------TCQVRPGSL-FHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPM 227 (393)
Q Consensus 158 l~~l~d~vh~~Gmk~Glw~~pg~---~------~c~~~pgs~-~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m 227 (393)
...+++..|+.|+|+=+-+.-.. . .....|..+ .+++..++.++++|+|.|-+|+-+.... ..+.|..+
T Consensus 47 ~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~~~~~-d~~~~~~f 125 (313)
T cd02874 47 DERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQRLINNILALAKKYGYDGVNIDFENVPPE-DREAYTQF 125 (313)
T ss_pred CHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCcEEEecccCCHH-HHHHHHHH
Confidence 36889999999999765553210 0 112344443 4678888999999999999999765432 23445554
Q ss_pred HHHH
Q 016207 228 RDAL 231 (393)
Q Consensus 228 ~~AL 231 (393)
.+.|
T Consensus 126 l~~l 129 (313)
T cd02874 126 LREL 129 (313)
T ss_pred HHHH
Confidence 4444
No 187
>PRK06256 biotin synthase; Validated
Probab=28.70 E-value=1.5e+02 Score=29.45 Aligned_cols=79 Identities=16% Similarity=0.172 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccccC
Q 016207 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQ 184 (393)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Glw~~pg~~~c~ 184 (393)
.+.++|.+.++.+. +.|+..|.|-.+.... +...++. +..+++.+++. ..+-+....|.
T Consensus 91 ~s~eeI~~~~~~~~-----~~g~~~~~l~~~g~~p----------~~~~~~~-~~e~i~~i~~~-~~i~~~~~~g~---- 149 (336)
T PRK06256 91 LDIEELIEAAKEAI-----EEGAGTFCIVASGRGP----------SGKEVDQ-VVEAVKAIKEE-TDLEICACLGL---- 149 (336)
T ss_pred CCHHHHHHHHHHHH-----HCCCCEEEEEecCCCC----------CchHHHH-HHHHHHHHHhc-CCCcEEecCCc----
Confidence 68899999999884 4566556554444321 1011122 67778888765 33333332221
Q ss_pred CCCcccccHHhHHHHHHHcCCcEEEee
Q 016207 185 VRPGSLFHEKDDAPLFASWGVDYLKYD 211 (393)
Q Consensus 185 ~~pgs~~~~~~~~~~~~~wGvdylK~D 211 (393)
--.+.++.+++.|++.+-+.
T Consensus 150 -------l~~e~l~~LkeaG~~~v~~~ 169 (336)
T PRK06256 150 -------LTEEQAERLKEAGVDRYNHN 169 (336)
T ss_pred -------CCHHHHHHHHHhCCCEEecC
Confidence 11356778889998877653
No 188
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=28.62 E-value=1.2e+02 Score=29.21 Aligned_cols=42 Identities=10% Similarity=0.279 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCcEEEeec
Q 016207 157 GIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDN 212 (393)
Q Consensus 157 Gl~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~ 212 (393)
+|++.++.+++.|+++.|+.+|.. ..++.-+++|.++|.+--
T Consensus 112 ~l~~~v~~L~~~GirVSLFiD~d~--------------~qi~aa~~~gA~~IELhT 153 (243)
T COG0854 112 KLRDAVRRLKNAGIRVSLFIDPDP--------------EQIEAAAEVGAPRIELHT 153 (243)
T ss_pred hHHHHHHHHHhCCCeEEEEeCCCH--------------HHHHHHHHhCCCEEEEec
Confidence 599999999999999999999854 245566789999998754
No 189
>PRK06769 hypothetical protein; Validated
Probab=28.59 E-value=1e+02 Score=27.56 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=20.4
Q ss_pred CCCCCHHHHHHHHHHcCCeEEEEee
Q 016207 153 TFPSGIKALADYVHGKGLKLGIYSD 177 (393)
Q Consensus 153 kFP~Gl~~l~d~vh~~Gmk~Glw~~ 177 (393)
-|| |++++.+++|++|++++|=++
T Consensus 29 ~~p-gv~e~L~~Lk~~G~~l~I~Tn 52 (173)
T PRK06769 29 LFP-FTKASLQKLKANHIKIFSFTN 52 (173)
T ss_pred ECC-CHHHHHHHHHHCCCEEEEEEC
Confidence 455 499999999999999999664
No 190
>cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI),
Probab=28.47 E-value=91 Score=30.58 Aligned_cols=49 Identities=22% Similarity=0.106 Sum_probs=34.0
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHHc-CCcEEEeec
Q 016207 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASW-GVDYLKYDN 212 (393)
Q Consensus 159 ~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~w-GvdylK~D~ 212 (393)
..+++.+|+.|+++..|+--.. |...+ +.| ..+++.+.++ |||+|=-|+
T Consensus 246 ~~~v~~a~~~Gl~v~~WTvn~~--~~~~~--~~~-~~~~~~l~~~~GVdgIiTD~ 295 (296)
T cd08559 246 TDLVKDAHKAGLLVHPYTFRNE--NLFLA--PDF-KQDMDALYNAAGVDGVFTDF 295 (296)
T ss_pred hHHHHHHHHcCCEEEEEEecCc--ccccc--ccc-ccCHHHHHHHhCCCEEEcCC
Confidence 6899999999999999985421 10000 111 3466778888 999998775
No 191
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=28.31 E-value=4.5e+02 Score=28.77 Aligned_cols=54 Identities=26% Similarity=0.409 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHc-CCeEEEEee
Q 016207 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGK-GLKLGIYSD 177 (393)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~-Gmk~Glw~~ 177 (393)
+|.+.+.+.++.+ .++|.+.|.|= |..|-..|.. +..++..|++. ++.+++.+-
T Consensus 146 ~~~~~~~~~~~~~-----~~~Gad~I~i~--------Dt~G~~~P~~------v~~lv~~lk~~~~~pi~~H~H 200 (582)
T TIGR01108 146 HTLETYLDLAEEL-----LEMGVDSICIK--------DMAGILTPKA------AYELVSALKKRFGLPVHLHSH 200 (582)
T ss_pred CCHHHHHHHHHHH-----HHcCCCEEEEC--------CCCCCcCHHH------HHHHHHHHHHhCCCceEEEec
Confidence 6889999999988 56678888773 3446666653 88999998754 778888763
No 192
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=28.19 E-value=88 Score=27.32 Aligned_cols=54 Identities=17% Similarity=0.322 Sum_probs=26.5
Q ss_pred HHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcCCeEEEE
Q 016207 113 TADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIY 175 (393)
Q Consensus 113 ~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Glw 175 (393)
.+..+.+.|+++-=.=||-|| +... + .++ +...=|= ++.+.+.|+..|.++|||
T Consensus 82 A~~~A~~lG~p~gt~IYfavD--~d~~--~--~~~--~~~i~~Y-~~g~~~~l~~~gY~~GvY 135 (136)
T PF08924_consen 82 AVAAARALGFPAGTPIYFAVD--YDAT--D--AEC--DSAILPY-FRGWNSALGASGYRPGVY 135 (136)
T ss_dssp HHHHHHHTT--SS-EEEEE----TS-B-----HH---------H-HHHHHHHHGGGT-EEEEE
T ss_pred HHHHHHHcCCCCCCEEEEEee--cCCC--c--hhh--hhHHHHH-HHHHHHHHhhCCCcceee
Confidence 334444457665335678888 3221 1 111 1122222 899999999999999998
No 193
>cd08608 GDPD_GDE2 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE2 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 5 (GDPD5)) and their metazoan homologs. Mammalian GDE2 is transmembrane protein primarily expressed in mature neurons. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE2 selectively hydrolyzes glycerophosphocholine (GPC) and has been characterized as GPC-GDE (EC 3.1.4.2) that contributes to osmotic regulation of cellular GPC. Mammalian GDE2 functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differenti
Probab=28.01 E-value=1.1e+02 Score=31.09 Aligned_cols=42 Identities=14% Similarity=0.042 Sum_probs=35.2
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCcEEEeecCC
Q 016207 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCF 214 (393)
Q Consensus 159 ~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~~~ 214 (393)
+.+++.+|+.|+++-+|+--.. ..++.+.++|||.|=-|+..
T Consensus 213 ~~~v~~~~~~Gl~V~vWTVN~~--------------~~~~~l~~~GVdgIiTD~P~ 254 (351)
T cd08608 213 AQEIRDYSASNLSVNLYTVNEP--------------WLYSLLWCSGVPSVTSDASH 254 (351)
T ss_pred HHHHHHHHHCCCEEEEEecCCH--------------HHHHHHHHCCCCEEEECCHH
Confidence 6889999999999999986532 46788999999999988753
No 194
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=27.99 E-value=1.6e+02 Score=30.14 Aligned_cols=58 Identities=12% Similarity=-0.073 Sum_probs=36.7
Q ss_pred HHHHHHHHHHcCCeEEEEee---------CCc-cccCCCC--cccccHHhHHHHHHHcCCcEEEeecCCC
Q 016207 158 IKALADYVHGKGLKLGIYSD---------AGV-FTCQVRP--GSLFHEKDDAPLFASWGVDYLKYDNCFN 215 (393)
Q Consensus 158 l~~l~d~vh~~Gmk~Glw~~---------pg~-~~c~~~p--gs~~~~~~~~~~~~~wGvdylK~D~~~~ 215 (393)
.+.+++.+|+.||++-.|+- ||. ..+...+ +..+........+.+.|||.|=-||-..
T Consensus 280 ~~~~v~~Ah~~GL~V~~WTvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvDGvftD~p~~ 349 (356)
T cd08560 280 PSEYAKAAKAAGLDIITWTLERSGPLASGGGWYYQTIEDVINNDGDMYNVLDVLARDVGILGIFSDWPAT 349 (356)
T ss_pred CHHHHHHHHHcCCEEEEEEeecCcccccCcccccccccccccccccHHHHHHHHHHhcCCCEEEccCCCc
Confidence 37899999999999999985 321 1121111 1122223333445599999999998653
No 195
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=27.47 E-value=1.1e+02 Score=34.03 Aligned_cols=77 Identities=17% Similarity=0.166 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHcCCeEEEEeeC-------------------------------Cc----cccC-----CCCcccccHHhH
Q 016207 157 GIKALADYVHGKGLKLGIYSDA-------------------------------GV----FTCQ-----VRPGSLFHEKDD 196 (393)
Q Consensus 157 Gl~~l~d~vh~~Gmk~Glw~~p-------------------------------g~----~~c~-----~~pgs~~~~~~~ 196 (393)
.+|.|++.+|++||++-|=+-. +. ..|. .+|.++.|+...
T Consensus 246 efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~i~d~ 325 (688)
T TIGR02100 246 EFKTMVRALHDAGIEVILDVVYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQMVMDS 325 (688)
T ss_pred HHHHHHHHHHHCCCEEEEEECcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHHHHHH
Confidence 4999999999999996542211 00 1121 256677777666
Q ss_pred HHHHH-HcCCcEEEeecCCCCCCC--ccccchHHHHHHHh
Q 016207 197 APLFA-SWGVDYLKYDNCFNLGIE--PKKRYPPMRDALNE 233 (393)
Q Consensus 197 ~~~~~-~wGvdylK~D~~~~~~~~--~~~~y~~m~~AL~~ 233 (393)
++.+. +.|||.+.+|....-... .......+.++|++
T Consensus 326 l~~W~~e~gIDGfR~D~a~~l~~~~~~~~~~~~~~~~i~~ 365 (688)
T TIGR02100 326 LRYWVTEMHVDGFRFDLATTLGRELYGFDMLSGFFTAIRQ 365 (688)
T ss_pred HHHHHHHcCCcEEEEechhhhccccCCCcccHHHHHHHHh
Confidence 66655 899999999987643321 11122356677765
No 196
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=27.14 E-value=40 Score=33.19 Aligned_cols=144 Identities=10% Similarity=0.147 Sum_probs=68.6
Q ss_pred ceEEechhhhCCCCCHHHHHHHHHHHHHcCCcccCceEEEe-----CCCcCCCCCCCCCCcc-------------ccCCC
Q 016207 92 QMGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNI-----DDCWSSPLRDLKGQLV-------------PDTIT 153 (393)
Q Consensus 92 p~GwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~I-----DDGW~~~~rd~~G~~~-------------~d~~k 153 (393)
|+| .|.+......+.++++..++..++.| ++.|++ .++.... +.+|... +|+.=
T Consensus 15 ~lg-dT~W~~~~~~~~~e~~~yL~~r~~qg-----FN~iq~~~l~~~~~~~~~--n~~~~~~~~~~~~~~~d~~~~N~~Y 86 (289)
T PF13204_consen 15 WLG-DTAWSLFHRLTREEWEQYLDTRKEQG-----FNVIQMNVLPQWDGYNTP--NRYGFAPFPDEDPGQFDFTRPNPAY 86 (289)
T ss_dssp EEE-EE-TTHHHH--HHHHHHHHHHHHHTT-------EEEEES-SSSS-B------TTS-BS-SSTT------TT----H
T ss_pred ehh-HHHHHHhhCCCHHHHHHHHHHHHHCC-----CCEEEEEeCCCccccccc--ccCCCcCCCCCCccccCCCCCCHHH
Confidence 455 45555556788899999999886554 444443 2233211 1222221 22222
Q ss_pred CCCCHHHHHHHHHHcCCeEEEEeeC------Ccccc--CCC--CcccccHHhHHHHHHHc-CCcEEEeecCCC-CCCCcc
Q 016207 154 FPSGIKALADYVHGKGLKLGIYSDA------GVFTC--QVR--PGSLFHEKDDAPLFASW-GVDYLKYDNCFN-LGIEPK 221 (393)
Q Consensus 154 FP~Gl~~l~d~vh~~Gmk~Glw~~p------g~~~c--~~~--pgs~~~~~~~~~~~~~w-GvdylK~D~~~~-~~~~~~ 221 (393)
|=. +..+++.+.++||.+.|=..- +...- ... .....|.+.+++.|+.. .|=++ =.+.. ......
T Consensus 87 F~~-~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~--l~gd~~~~~~~~ 163 (289)
T PF13204_consen 87 FDH-LDRRIEKANELGIEAALVPFWGCPYVPGTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWI--LGGDYFDTEKTR 163 (289)
T ss_dssp HHH-HHHHHHHHHHTT-EEEEESS-HHHHH-------TTSS-HHHHHHHHHHHHHHHTT-SSEEEE--EESSS--TTSSH
T ss_pred HHH-HHHHHHHHHHCCCeEEEEEEECCccccccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEE--ecCccCCCCcCH
Confidence 222 789999999999999853221 11000 111 12355777778888876 44332 11111 223445
Q ss_pred ccchHHHHHHHhcCCCceeeccCCC
Q 016207 222 KRYPPMRDALNETGCSIFYSLCEWG 246 (393)
Q Consensus 222 ~~y~~m~~AL~~agr~i~~slc~~g 246 (393)
+.+.+|.+.|++..+.-+.+++..+
T Consensus 164 ~~w~~~~~~i~~~dp~~L~T~H~~~ 188 (289)
T PF13204_consen 164 ADWDAMARGIKENDPYQLITIHPCG 188 (289)
T ss_dssp HHHHHHHHHHHHH--SS-EEEEE-B
T ss_pred HHHHHHHHHHHhhCCCCcEEEeCCC
Confidence 6777888888765542267766544
No 197
>PRK11059 regulatory protein CsrD; Provisional
Probab=26.82 E-value=89 Score=33.99 Aligned_cols=72 Identities=13% Similarity=0.212 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCcEEEeecCCCCCCCccc----cchHHHHHHH
Q 016207 157 GIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKK----RYPPMRDALN 232 (393)
Q Consensus 157 Gl~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~----~y~~m~~AL~ 232 (393)
.+.++.+.+++.|++++|= ...+... -...+++..+||||+|-.......... -.+.+.....
T Consensus 534 ~~~~~l~~L~~~G~~iaid------dfG~g~~-------s~~~L~~l~~d~iKid~s~v~~i~~~~~~~~~v~sli~~a~ 600 (640)
T PRK11059 534 RLRPVLRMLRGLGCRLAVD------QAGLTVV-------STSYIKELNVELIKLHPSLVRNIHKRTENQLFVRSLVGACA 600 (640)
T ss_pred HHHHHHHHHHHCCCEEEEE------CCCCCcc-------cHHHHHhCCCCEEEECHHHHhhhhcCchhHHHHHHHHHHHH
Confidence 4788888889999888871 1111111 235678889999999986543222111 1234444455
Q ss_pred hcCCCceee
Q 016207 233 ETGCSIFYS 241 (393)
Q Consensus 233 ~agr~i~~s 241 (393)
..|-.++.+
T Consensus 601 ~~~i~viAe 609 (640)
T PRK11059 601 GTETQVFAT 609 (640)
T ss_pred HCCCeEEEE
Confidence 666666665
No 198
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=26.79 E-value=4e+02 Score=25.37 Aligned_cols=104 Identities=12% Similarity=0.004 Sum_probs=0.0
Q ss_pred CCCceEEechhhhCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHc
Q 016207 89 STPQMGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGK 168 (393)
Q Consensus 89 ~~pp~GwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~ 168 (393)
++-++|-++| .+..+.+-++.++.+..+ ||+.|-| |-. ......--....|.-++.+.+.+.+.
T Consensus 1 ~~~~~~~~~~-~~~~~~~~~e~l~~~~~~--------G~~~VEl---~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~ 64 (279)
T TIGR00542 1 KKHPLGIYEK-ALPKGECWLERLQLAKTC--------GFDFVEM---SVD----ETDDRLSRLDWSREQRLALVNAIIET 64 (279)
T ss_pred CCcccceehh-hCCCCCCHHHHHHHHHHc--------CCCEEEE---ecC----CccchhhccCCCHHHHHHHHHHHHHc
Q ss_pred CCeE-EEEeeCCccccCCCCc------ccccHHhHHHHHHHcCCcEE
Q 016207 169 GLKL-GIYSDAGVFTCQVRPG------SLFHEKDDAPLFASWGVDYL 208 (393)
Q Consensus 169 Gmk~-Glw~~pg~~~c~~~pg------s~~~~~~~~~~~~~wGvdyl 208 (393)
|+++ ++...+........+. ..++++..++..+++|.++|
T Consensus 65 gl~i~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~i~~a~~lG~~~v 111 (279)
T TIGR00542 65 GVRIPSMCLSAHRRFPLGSKDKAVRQQGLEIMEKAIQLARDLGIRTI 111 (279)
T ss_pred CCCceeeecCCCccCcCCCcCHHHHHHHHHHHHHHHHHHHHhCCCEE
No 199
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=26.71 E-value=78 Score=31.56 Aligned_cols=58 Identities=21% Similarity=0.362 Sum_probs=38.1
Q ss_pred CCCcccccH--HhHHHHHHHcCCcEEEeecCCCCCCC--ccccchHHHHHHHhcCCCceeecc
Q 016207 185 VRPGSLFHE--KDDAPLFASWGVDYLKYDNCFNLGIE--PKKRYPPMRDALNETGCSIFYSLC 243 (393)
Q Consensus 185 ~~pgs~~~~--~~~~~~~~~wGvdylK~D~~~~~~~~--~~~~y~~m~~AL~~agr~i~~slc 243 (393)
.+|+-.+=- +..+..+++||+|||-+--...++.. +...+..--+.|+.-.+.|+++ |
T Consensus 134 R~PpPlDp~EPeNTAeAIasWgl~YiVlTSVDRDDlpDgGa~HiAkTVq~iK~k~p~ilvE-~ 195 (360)
T KOG2672|consen 134 RNPPPLDPNEPENTAEAIASWGLDYIVLTSVDRDDLPDGGANHIAKTVQKIKEKAPEILVE-C 195 (360)
T ss_pred CCCcCCCCCCcccHHHHHHHcCCCeEEEEecccccCcCcchHHHHHHHHHHHhhCcccchh-h
Confidence 345544322 45788999999999999888776543 2334445555566666777776 5
No 200
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=26.70 E-value=2e+02 Score=27.73 Aligned_cols=81 Identities=20% Similarity=0.202 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccccC
Q 016207 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQ 184 (393)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Glw~~pg~~~c~ 184 (393)
.+.+++.+.++.+ ++.|+..|.|=.++... ++..|..=++.+.+.+++.|+++- ...|.
T Consensus 62 ~~~eei~~~~~~~-----~~~g~~~~~l~~~g~~~----------~~~~~~~~~~~i~~~~~~~~i~~~--~~~g~---- 120 (296)
T TIGR00433 62 KKVDEVLEEARKA-----KAAGATRFCLVASGRGP----------KDREFMEYVEAMVQIVEEMGLKTC--ATLGL---- 120 (296)
T ss_pred CCHHHHHHHHHHH-----HHCCCCEEEEEEecCCC----------ChHHHHHHHHHHHHHHHhCCCeEE--ecCCC----
Confidence 4567788888877 44577776543333321 111111226667666677777652 12221
Q ss_pred CCCcccccHHhHHHHHHHcCCcEEEeecC
Q 016207 185 VRPGSLFHEKDDAPLFASWGVDYLKYDNC 213 (393)
Q Consensus 185 ~~pgs~~~~~~~~~~~~~wGvdylK~D~~ 213 (393)
.. ++.++.+++.|++.+-+..-
T Consensus 121 -----~~--~e~l~~Lk~aG~~~v~i~~E 142 (296)
T TIGR00433 121 -----LD--PEQAKRLKDAGLDYYNHNLD 142 (296)
T ss_pred -----CC--HHHHHHHHHcCCCEEEEccc
Confidence 11 56788999999999877654
No 201
>PRK13561 putative diguanylate cyclase; Provisional
Probab=26.65 E-value=76 Score=34.38 Aligned_cols=49 Identities=18% Similarity=0.198 Sum_probs=30.3
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCcEEEeecCCCC
Q 016207 158 IKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNL 216 (393)
Q Consensus 158 l~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~~~~~ 216 (393)
...+.+.++++|++++|= ...+...+..| ...+++.++||||+|.....
T Consensus 536 ~~~~~~~l~~~G~~i~ld------dfG~g~ssl~~----L~~l~~l~~d~lKiD~s~i~ 584 (651)
T PRK13561 536 AVAILRPLRNAGVRVALD------DFGMGYAGLRQ----LQHMKSLPIDVLKIDKMFVD 584 (651)
T ss_pred HHHHHHHHHHCCCEEEEE------CCCCCcccHHH----HhhcCCCCCcEEEECHHHHh
Confidence 567778888888888871 11111112222 23356689999999986543
No 202
>TIGR03586 PseI pseudaminic acid synthase.
Probab=26.23 E-value=2.4e+02 Score=28.51 Aligned_cols=42 Identities=19% Similarity=0.161 Sum_probs=31.0
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCcEEEeecCC
Q 016207 158 IKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCF 214 (393)
Q Consensus 158 l~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~~~ 214 (393)
.+.|.+|.+++|+.|- ++| +-...++.+.+.|++.+|+=-..
T Consensus 79 ~~~L~~~~~~~Gi~~~--stp-------------fd~~svd~l~~~~v~~~KI~S~~ 120 (327)
T TIGR03586 79 HKELFERAKELGLTIF--SSP-------------FDETAVDFLESLDVPAYKIASFE 120 (327)
T ss_pred HHHHHHHHHHhCCcEE--Ecc-------------CCHHHHHHHHHcCCCEEEECCcc
Confidence 4679999999999874 222 22345677889999999986644
No 203
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=26.05 E-value=5.8e+02 Score=27.98 Aligned_cols=54 Identities=26% Similarity=0.342 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHc-CCeEEEEee
Q 016207 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGK-GLKLGIYSD 177 (393)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~-Gmk~Glw~~ 177 (393)
++.+.+++.++.+ .++|.+.|.|= |..|-..|. -+..|+..+++. ++.+++.+-
T Consensus 151 ~t~~~~~~~a~~l-----~~~Gad~I~i~--------Dt~G~~~P~------~~~~lv~~lk~~~~~pi~~H~H 205 (592)
T PRK09282 151 HTIEKYVELAKEL-----EEMGCDSICIK--------DMAGLLTPY------AAYELVKALKEEVDLPVQLHSH 205 (592)
T ss_pred CCHHHHHHHHHHH-----HHcCCCEEEEC--------CcCCCcCHH------HHHHHHHHHHHhCCCeEEEEEc
Confidence 6888999999988 56678888773 344666555 489999999864 778888763
No 204
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=25.89 E-value=1e+02 Score=31.08 Aligned_cols=105 Identities=15% Similarity=0.106 Sum_probs=58.6
Q ss_pred chhhhCCCCCHHHHHHHHHHHHH--cCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcCCeEEE
Q 016207 97 SWNFFACNISETIIKETADALVS--TGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGI 174 (393)
Q Consensus 97 SW~~~~~~i~e~~i~~~ad~~~~--~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Gl 174 (393)
+.+.+|.+ .++.+.+.|+++.+ ..|.++|+.++||||--....-++ .-.-+.+.+-.-+....+++++
T Consensus 139 ~~~~~Y~~-~~el~~dlA~al~~Ei~~L~~aG~~~IQiDeP~l~~~~~~---------~~~~~v~~~n~~~~g~~~~v~~ 208 (339)
T PRK09121 139 LYDDHYKS-REKLAWEFAKILNQEAKELEAAGVDIIQFDEPAFNVFFDE---------VNDWGVAALERAIEGLKCETAV 208 (339)
T ss_pred hccccCCC-HHHHHHHHHHHHHHHHHHHHHCCCCEEEecccHHhhhhHH---------HHHHHHHHHHHHHcCCCCceEE
Confidence 33345543 46677777777665 356789999999998754411100 0001233333334445566666
Q ss_pred EeeCCccccCCCCcc---------cccHHhHHHHHHHcCCcEEEeecCC
Q 016207 175 YSDAGVFTCQVRPGS---------LFHEKDDAPLFASWGVDYLKYDNCF 214 (393)
Q Consensus 175 w~~pg~~~c~~~pgs---------~~~~~~~~~~~~~wGvdylK~D~~~ 214 (393)
.+-.|... .+++ .+-++..+..+.+..||.+=++|-+
T Consensus 209 HvC~G~~~---~~~~~~~~~~~~~~g~y~~i~~~l~~~~vd~~~lE~~~ 254 (339)
T PRK09121 209 HICYGYGI---KANTDWKKTLGSEWRQYEEAFPKLQKSNIDIISLECHN 254 (339)
T ss_pred EEeCCCCC---CCccccccccccccccHHHHHHHHHhCCCCEEEEEecC
Confidence 44433210 0111 0233456777889999999999853
No 205
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=25.48 E-value=1.2e+02 Score=29.39 Aligned_cols=92 Identities=27% Similarity=0.355 Sum_probs=57.1
Q ss_pred CceEEechhhhCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcCC
Q 016207 91 PQMGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGL 170 (393)
Q Consensus 91 pp~GwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gm 170 (393)
-.++|-.+... ..++.-.+.+.+ ++.|+.-+.|| -+ +++|.-..|--.-+ -|+.+++..|+.|+
T Consensus 118 VAv~yAD~~r~-~~~~p~~l~~~a--------~~aG~~gvMlD-Ta-----~Kdg~~L~d~~~~~-~L~~Fv~~ar~~gL 181 (235)
T PF04476_consen 118 VAVGYADAQRV-GSISPLDLPEIA--------AEAGFDGVMLD-TA-----DKDGGSLFDHLSEE-ELAEFVAQARAHGL 181 (235)
T ss_pred EEEEecchhhh-cCCCHHHHHHHH--------HHcCCCEEEEe-cc-----cCCCCchhhcCCHH-HHHHHHHHHHHccc
Confidence 35566665432 234555554444 34588899998 23 33333233322222 38999999999999
Q ss_pred eEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCcEEEeec
Q 016207 171 KLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDN 212 (393)
Q Consensus 171 k~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~ 212 (393)
..|| .| |.. ..++..+...+-||+=+-.
T Consensus 182 ~~aL---AG---------SL~--~~di~~L~~l~pD~lGfRG 209 (235)
T PF04476_consen 182 MCAL---AG---------SLR--FEDIPRLKRLGPDILGFRG 209 (235)
T ss_pred hhhc---cc---------cCC--hhHHHHHHhcCCCEEEech
Confidence 9987 22 222 2477888899999987766
No 206
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=25.35 E-value=6.7e+02 Score=26.46 Aligned_cols=54 Identities=20% Similarity=0.271 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHH-cCCeEEEEe
Q 016207 104 NISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHG-KGLKLGIYS 176 (393)
Q Consensus 104 ~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~-~Gmk~Glw~ 176 (393)
.++.+.+.+.|+.+ .++|.+.|.|= |..|-..|. -+..++..+++ .++.+++..
T Consensus 150 ~~~~~~~~~~a~~l-----~~~Gad~I~i~--------Dt~G~l~P~------~v~~lv~alk~~~~~pi~~H~ 204 (448)
T PRK12331 150 VHTIDYFVKLAKEM-----QEMGADSICIK--------DMAGILTPY------VAYELVKRIKEAVTVPLEVHT 204 (448)
T ss_pred CCCHHHHHHHHHHH-----HHcCCCEEEEc--------CCCCCCCHH------HHHHHHHHHHHhcCCeEEEEe
Confidence 37788888888887 55677777773 344666555 37888888874 367777765
No 207
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=25.00 E-value=87 Score=31.90 Aligned_cols=53 Identities=25% Similarity=0.298 Sum_probs=39.8
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCcEEEeecCCCC
Q 016207 158 IKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNL 216 (393)
Q Consensus 158 l~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~~~~~ 216 (393)
++.|.++++..||++-+=++|....- .+.--.....|.+.|++.|.+|+-...
T Consensus 51 ~~ell~~Anklg~~vivDvnPsil~~------l~~S~~~l~~f~e~G~~glRlD~gfS~ 103 (360)
T COG3589 51 FKELLKEANKLGLRVIVDVNPSILKE------LNISLDNLSRFQELGVDGLRLDYGFSG 103 (360)
T ss_pred HHHHHHHHHhcCcEEEEEcCHHHHhh------cCCChHHHHHHHHhhhhheeecccCCH
Confidence 89999999999999988777764210 000012577899999999999998765
No 208
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=24.70 E-value=2.3e+02 Score=32.13 Aligned_cols=71 Identities=21% Similarity=0.294 Sum_probs=51.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCC-C-----CCHHHHHHHHHHcCCeEEEEe
Q 016207 103 CNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITF-P-----SGIKALADYVHGKGLKLGIYS 176 (393)
Q Consensus 103 ~~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kF-P-----~Gl~~l~d~vh~~Gmk~Glw~ 176 (393)
..++.+..+++++.+ +++|+..+-+--=|-.......|+=++|+.+- | .|+..|+..+|++||.+-+=+
T Consensus 14 ~gFtF~~A~~~l~yl-----~~LGIShLY~SPIftA~pGStHGYDVvD~t~InPeLGG~egl~rLvaalk~~GlGlI~DI 88 (889)
T COG3280 14 GGFTFADARALLDYL-----ADLGISHLYLSPIFTARPGSTHGYDVVDPTEINPELGGEEGLERLVAALKSRGLGLIVDI 88 (889)
T ss_pred CCCCHHHHHHhhHHH-----HhcCchheeccchhhcCCCCCCCccCCCccccChhhcChHHHHHHHHHHHhcCCceEEEe
Confidence 368889999999999 78888877665445443333457777776654 2 378999999999999877655
Q ss_pred eC
Q 016207 177 DA 178 (393)
Q Consensus 177 ~p 178 (393)
-|
T Consensus 89 VP 90 (889)
T COG3280 89 VP 90 (889)
T ss_pred cc
Confidence 55
No 209
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=24.38 E-value=1.7e+02 Score=28.42 Aligned_cols=43 Identities=12% Similarity=0.332 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCcEEEeec
Q 016207 156 SGIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDN 212 (393)
Q Consensus 156 ~Gl~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~ 212 (393)
+-|++.++.+|+.|.+..|..+|.. ..++.-++.|.|+|.++-
T Consensus 111 ~~l~~~i~~L~~~gIrvSLFiDP~~--------------~qi~~A~~~Gad~VELhT 153 (239)
T PF03740_consen 111 DRLKPVIKRLKDAGIRVSLFIDPDP--------------EQIEAAKELGADRVELHT 153 (239)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-S-H--------------HHHHHHHHTT-SEEEEET
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCCH--------------HHHHHHHHcCCCEEEEeh
Confidence 3499999999999999999999964 356677789999999876
No 210
>TIGR01748 rhaA L-rhamnose isomerase. This enzyme interconverts L-rhamnose and L-rhamnulose. In some species, including E. coli, this is the first step in rhamnose catabolism. Sequential steps are catalyzed by rhamnulose kinase (rhaB), then rhamnulose-1-phosphate aldolase (rhaD) to yield glycerone phosphate and (S)-lactaldehyde. Characterization of this family is based on members in E. coli and Salmonella.
Probab=24.37 E-value=1.8e+02 Score=30.29 Aligned_cols=65 Identities=14% Similarity=0.220 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccC-CCCCCCHHHHHHHHHHcCCeEEEEeeCC
Q 016207 104 NISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDT-ITFPSGIKALADYVHGKGLKLGIYSDAG 179 (393)
Q Consensus 104 ~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~-~kFP~Gl~~l~d~vh~~Gmk~Glw~~pg 179 (393)
.-|.++.++.++.+.+ ---|-..+++=.-|... | . .+|. +--|.-.++++++.+++|++++ ++|-
T Consensus 65 aR~~~El~~D~~~~~~---L~pg~~~vnLH~~y~~~--d---~-~vdrd~~~p~hf~~w~~~Ak~~glglD--fNpn 130 (414)
T TIGR01748 65 ARTPSELRADLEKAMS---LIPGKHRLNLHAIYLET--D---E-PVSRDEIKPEHFKNWVEWAKANGLGLD--FNPT 130 (414)
T ss_pred CCCHHHHHHHHHHHHH---hcCCCCceeeecccccC--C---C-cccccccCcccHHHHHHHHHHcCCCcC--cCcc
Confidence 3466667777766654 22256678887777421 1 0 1111 2335569999999999999999 6763
No 211
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=24.29 E-value=2.4e+02 Score=28.20 Aligned_cols=97 Identities=20% Similarity=0.330 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHH--cCCcccCceEEEeCCC-----------cCCCCCCCCCCccccCCCCCCCHHHHHHHHHHc---
Q 016207 105 ISETIIKETADALVS--TGLAELGYDHVNIDDC-----------WSSPLRDLKGQLVPDTITFPSGIKALADYVHGK--- 168 (393)
Q Consensus 105 i~e~~i~~~ad~~~~--~gl~~~G~~~~~IDDG-----------W~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~--- 168 (393)
+|+++|.+.++.+++ ...+++|++-|.|-.+ -.....|.+|-=.-|..+| +..+++.|++.
T Consensus 139 mt~~eI~~~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf---~~EiI~aIR~avG~ 215 (338)
T cd04733 139 MTEEEIEDVIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARL---LLEIYDAIRAAVGP 215 (338)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHH---HHHHHHHHHHHcCC
Q ss_pred CCeEEEEeeCCccccCCCCcccccH--HhHHHHHHHcCCcEE
Q 016207 169 GLKLGIYSDAGVFTCQVRPGSLFHE--KDDAPLFASWGVDYL 208 (393)
Q Consensus 169 Gmk~Glw~~pg~~~c~~~pgs~~~~--~~~~~~~~~wGvdyl 208 (393)
++.+++=+.+ +...++..... ...++.+.+.|+|||
T Consensus 216 d~~v~vris~----~~~~~~g~~~eea~~ia~~Le~~Gvd~i 253 (338)
T cd04733 216 GFPVGIKLNS----ADFQRGGFTEEDALEVVEALEEAGVDLV 253 (338)
T ss_pred CCeEEEEEcH----HHcCCCCCCHHHHHHHHHHHHHcCCCEE
No 212
>PLN02455 fructose-bisphosphate aldolase
Probab=24.29 E-value=1.3e+02 Score=30.78 Aligned_cols=56 Identities=20% Similarity=0.272 Sum_probs=38.9
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCCcc-----cccHHhHHHHHHHcCCcEEEeecCC
Q 016207 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPGS-----LFHEKDDAPLFASWGVDYLKYDNCF 214 (393)
Q Consensus 159 ~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs-----~~~~~~~~~~~~~wGvdylK~D~~~ 214 (393)
++++++++++|+-+||=++-|.....+.+|. ++=+....+.+.+-|++|=||-...
T Consensus 87 ~p~~~~L~~~GIvPGIKVDkGl~~l~g~~ge~~t~GLDgL~~R~~~y~~~GarFAKWRsVi 147 (358)
T PLN02455 87 KPFVDVLKENGVLPGIKVDKGTVELAGTNGETTTQGLDGLGARCAKYYEAGARFAKWRAVL 147 (358)
T ss_pred cCHHHHHHHCCCeeeEEecCCccccCCCCCCccCcchHHHHHHHHHHHhcCCceeeceeee
Confidence 6789999999999999998876444333432 2223344455556699999988753
No 213
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=24.17 E-value=75 Score=31.26 Aligned_cols=86 Identities=15% Similarity=0.190 Sum_probs=49.3
Q ss_pred HHHHHHHHHHcC--CeEEEEeeCCcc------ccCCCCcc-cccHHhHHHHHHHcCCcEEEeecCCCCCCCccccch---
Q 016207 158 IKALADYVHGKG--LKLGIYSDAGVF------TCQVRPGS-LFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYP--- 225 (393)
Q Consensus 158 l~~l~d~vh~~G--mk~Glw~~pg~~------~c~~~pgs-~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~--- 225 (393)
+..+.+.+|++. +|+-|-+.-... .....|.. ..+++..++.++++|+|.|-+|+-+.......+.|.
T Consensus 53 ~~~~~~~~k~~~~~lkvlisiGG~~~~s~~fs~~~~~~~~R~~fi~siv~~l~~~~fDGidiDWE~P~~~~d~~n~~~ll 132 (299)
T cd02879 53 FSTFTETVKRKNPSVKTLLSIGGGGSDSSAFAAMASDPTARKAFINSSIKVARKYGFDGLDLDWEFPSSQVEMENFGKLL 132 (299)
T ss_pred HHHHHHHHHHhCCCCeEEEEEeCCCCCCchhhHHhCCHHHHHHHHHHHHHHHHHhCCCceeecccCCCChhHHHHHHHHH
Confidence 556666666544 565443322110 11233443 346688889999999999999998765333334454
Q ss_pred -HHHHHHHh----cC-CCceeecc
Q 016207 226 -PMRDALNE----TG-CSIFYSLC 243 (393)
Q Consensus 226 -~m~~AL~~----ag-r~i~~slc 243 (393)
.++++|.+ .+ ..++++..
T Consensus 133 ~elr~~l~~~~~~~~~~~~~ls~a 156 (299)
T cd02879 133 EEWRAAVKDEARSSGRPPLLLTAA 156 (299)
T ss_pred HHHHHHHHHHhhccCCCcEEEEee
Confidence 44555542 23 35666654
No 214
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=24.09 E-value=78 Score=30.72 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCcccCceEEEeCC
Q 016207 103 CNISETIIKETADALVSTGLAELGYDHVNIDD 134 (393)
Q Consensus 103 ~~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDD 134 (393)
..++.|.+++..+.+ ++.+|+|+++|+
T Consensus 95 dalt~E~v~~vv~eL-----~~~~fDyIi~Ds 121 (272)
T COG2894 95 DALTPEGVKKVVNEL-----KAMDFDYIIIDS 121 (272)
T ss_pred ccCCHHHHHHHHHHH-----HhcCCCEEEecC
Confidence 358999999999999 557899999994
No 215
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=23.74 E-value=2.7e+02 Score=27.45 Aligned_cols=101 Identities=17% Similarity=0.057 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHH--cCCcccCceEEEeCCC-cCCCCCCCCCCccccCCCCCCCHHHHHHHHHH--cCCeEEEEeeCCcc
Q 016207 107 ETIIKETADALVS--TGLAELGYDHVNIDDC-WSSPLRDLKGQLVPDTITFPSGIKALADYVHG--KGLKLGIYSDAGVF 181 (393)
Q Consensus 107 e~~i~~~ad~~~~--~gl~~~G~~~~~IDDG-W~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~--~Gmk~Glw~~pg~~ 181 (393)
++.+.+.|+.+.+ ..|.++|+.+++||+- |.. ..+.. .+ +..=.-++.+.+.+++ .++++++.+-.|..
T Consensus 147 ~el~~~la~~~~~e~~~l~~aG~~~iQiDEP~l~~-~~~~~----~~-~~~~~~~~~~~~~l~~~~~~~~v~lHiC~G~~ 220 (332)
T cd03311 147 EELAMDLALALREEIRDLYDAGCRYIQIDEPALAE-GLPLE----PD-DLAADYLKWANEALADRPDDTQIHTHICYGNF 220 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEeecchhhc-cCCcc----cH-HHHHHHHHHHHHHHHhCCCCCEEEEEEECCCC
Confidence 3444555554443 2457789999999996 332 11110 00 0000125666667765 35677876544331
Q ss_pred ccCCCCcccccHHhHHHHHHHcCCcEEEeecCCC
Q 016207 182 TCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFN 215 (393)
Q Consensus 182 ~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~~~~ 215 (393)
.-. .-+.+-+...+..+.+.++|.+-+|+...
T Consensus 221 ~~~--~~~~~~y~~i~~~l~~~~vd~~~le~~~~ 252 (332)
T cd03311 221 RST--WAAEGGYEPIAEYIFELDVDVFFLEYDNS 252 (332)
T ss_pred ccc--ccccCcHHHHHHHHHhCCCCEEEEEEcCC
Confidence 100 01122234567778888899999999754
No 216
>PRK01060 endonuclease IV; Provisional
Probab=23.67 E-value=5.4e+02 Score=24.36 Aligned_cols=121 Identities=17% Similarity=0.109 Sum_probs=64.5
Q ss_pred HHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcCCeEE-EEee-CCc-cccCCC
Q 016207 110 IKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLG-IYSD-AGV-FTCQVR 186 (393)
Q Consensus 110 i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~G-lw~~-pg~-~~c~~~ 186 (393)
+.+.++.+ +++||+.|.|.-+--. .|.. +..=|.-++.+-+.+++.|++++ +... |.. ..|...
T Consensus 14 ~~~~l~~~-----~~~G~d~vEl~~~~p~-------~~~~-~~~~~~~~~~lk~~~~~~gl~~~~~~~h~~~~~nl~~~d 80 (281)
T PRK01060 14 LEGAVAEA-----AEIGANAFMIFTGNPQ-------QWKR-KPLEELNIEAFKAACEKYGISPEDILVHAPYLINLGNPN 80 (281)
T ss_pred HHHHHHHH-----HHcCCCEEEEECCCCC-------CCcC-CCCCHHHHHHHHHHHHHcCCCCCceEEecceEecCCCCC
Confidence 56677777 6789999998532110 0110 00011137788888999999854 2221 211 112222
Q ss_pred C----cccccHHhHHHHHHHcCCcEEEeecCCCCCC-CccccchHHHHHHHh-----cCCCceeecc
Q 016207 187 P----GSLFHEKDDAPLFASWGVDYLKYDNCFNLGI-EPKKRYPPMRDALNE-----TGCSIFYSLC 243 (393)
Q Consensus 187 p----gs~~~~~~~~~~~~~wGvdylK~D~~~~~~~-~~~~~y~~m~~AL~~-----agr~i~~slc 243 (393)
| .+.+++...++.-++.|+.+|.+=....... ...+.+..+.++|++ .|-.+.++.+
T Consensus 81 ~~~r~~s~~~~~~~i~~A~~lga~~vv~h~G~~~~~~~~~~~~~~~~e~l~~l~~~~~gv~l~iEn~ 147 (281)
T PRK01060 81 KEILEKSRDFLIQEIERCAALGAKLLVFHPGSHLGDIDEEDCLARIAESLNEALDKTQGVTIVLENT 147 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcHHHHHHHHHHHHHHHHhcCCCCEEEEecC
Confidence 3 2345666777778899999999832211111 112355555555542 2445566654
No 217
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=23.59 E-value=73 Score=37.10 Aligned_cols=46 Identities=22% Similarity=0.305 Sum_probs=33.0
Q ss_pred ccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcCCeEEEEee
Q 016207 124 ELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSD 177 (393)
Q Consensus 124 ~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Glw~~ 177 (393)
++||+|+.++|-=|.. |++.+ +.-|- |+.|.+-.+++|+.||+=++
T Consensus 258 ~~g~~~~~~~~~~f~~------dl~~~-~~~~~-~~~l~~~~~~~~~~fgvk~~ 303 (1012)
T TIGR03315 258 EMGFDYIVLKEESFSH------DLQYE-DAVAM-LQRLQLLAKEKGLGFGVKLT 303 (1012)
T ss_pred hcCCceEecchhhccc------ccchh-HHHHH-HHHHHHHHHHcCCeeeEEEe
Confidence 4699999999877762 23332 12222 67888888999999999875
No 218
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=23.50 E-value=3.6e+02 Score=25.27 Aligned_cols=49 Identities=12% Similarity=0.091 Sum_probs=38.5
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCcEEEe
Q 016207 158 IKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKY 210 (393)
Q Consensus 158 l~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~ 210 (393)
+...++++++.|+++.+.++.-. .| +-..+++...++.+.+.|++.|-+
T Consensus 117 ~~~~i~~a~~~G~~v~~~~~~~~-~~---~~~~~~l~~~~~~~~~~g~~~i~l 165 (265)
T cd03174 117 AEEAIEAAKEAGLEVEGSLEDAF-GC---KTDPEYVLEVAKALEEAGADEISL 165 (265)
T ss_pred HHHHHHHHHHCCCeEEEEEEeec-CC---CCCHHHHHHHHHHHHHcCCCEEEe
Confidence 78888999999999988775422 12 234677888999999999999885
No 219
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=23.30 E-value=5.1e+02 Score=24.08 Aligned_cols=75 Identities=13% Similarity=0.034 Sum_probs=43.3
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCcEEEeecCCCCCCCccccchHHHHHHHhcCCC
Q 016207 158 IKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCS 237 (393)
Q Consensus 158 l~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~AL~~agr~ 237 (393)
++.+.+..|+.|+++=+........... .-+.+-+...++...+.|.||||..+.. ....+++..+....|
T Consensus 111 i~~v~~~~~~~g~~~iie~~~~g~~~~~-~~~~~~i~~~~~~a~~~GaD~Ik~~~~~--------~~~~~~~i~~~~~~p 181 (235)
T cd00958 111 LARVAAEAHKYGLPLIAWMYPRGPAVKN-EKDPDLIAYAARIGAELGADIVKTKYTG--------DAESFKEVVEGCPVP 181 (235)
T ss_pred HHHHHHHHHHcCCCEEEEEeccCCcccC-ccCHHHHHHHHHHHHHHCCCEEEecCCC--------CHHHHHHHHhcCCCC
Confidence 7888888899999987744321000000 0011222333566779999999995321 123455555556678
Q ss_pred ceee
Q 016207 238 IFYS 241 (393)
Q Consensus 238 i~~s 241 (393)
++.+
T Consensus 182 vv~~ 185 (235)
T cd00958 182 VVIA 185 (235)
T ss_pred EEEe
Confidence 7655
No 220
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=23.08 E-value=3e+02 Score=30.89 Aligned_cols=102 Identities=16% Similarity=0.207 Sum_probs=63.7
Q ss_pred CCCCHHHHHHHHHHHHHc--CCcccCceEEEeCCCc--------C---CCCCCCCCCccccCCCCCCCHHHHHHHHHHc-
Q 016207 103 CNISETIIKETADALVST--GLAELGYDHVNIDDCW--------S---SPLRDLKGQLVPDTITFPSGIKALADYVHGK- 168 (393)
Q Consensus 103 ~~i~e~~i~~~ad~~~~~--gl~~~G~~~~~IDDGW--------~---~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~- 168 (393)
..+|+++|.+..+.+++. ..+++|++-|.|-.|- . +...|.+|-=.-|..+| +..+++.|++.
T Consensus 539 ~~mt~~eI~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~---~~eiv~~ir~~~ 615 (765)
T PRK08255 539 REMTRADMDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRY---PLEVFRAVRAVW 615 (765)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHH---HHHHHHHHHHhc
Confidence 358888888877765442 2356899999998772 1 11245555433455676 55788888763
Q ss_pred --CCeEEEEeeCCccccCCCCcccccH--HhHHHHHHHcCCcEEEee
Q 016207 169 --GLKLGIYSDAGVFTCQVRPGSLFHE--KDDAPLFASWGVDYLKYD 211 (393)
Q Consensus 169 --Gmk~Glw~~pg~~~c~~~pgs~~~~--~~~~~~~~~wGvdylK~D 211 (393)
.+.+|+=+.+... .++..... ...++.+.+.|+|||-+-
T Consensus 616 ~~~~~v~~ri~~~~~----~~~g~~~~~~~~~~~~l~~~g~d~i~vs 658 (765)
T PRK08255 616 PAEKPMSVRISAHDW----VEGGNTPDDAVEIARAFKAAGADLIDVS 658 (765)
T ss_pred CCCCeeEEEEccccc----cCCCCCHHHHHHHHHHHHhcCCcEEEeC
Confidence 4677776665321 12222222 345678899999999875
No 221
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=22.91 E-value=1.5e+02 Score=29.26 Aligned_cols=85 Identities=22% Similarity=0.214 Sum_probs=51.2
Q ss_pred cccCceEEEeCCCcCCCCCCCCCCccccCCCC-----CCCHHHHHHHHHHcCC-eEEEEeeCCccccCCCCcccccHHhH
Q 016207 123 AELGYDHVNIDDCWSSPLRDLKGQLVPDTITF-----PSGIKALADYVHGKGL-KLGIYSDAGVFTCQVRPGSLFHEKDD 196 (393)
Q Consensus 123 ~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kF-----P~Gl~~l~d~vh~~Gm-k~Glw~~pg~~~c~~~pgs~~~~~~~ 196 (393)
.+.|.+.+.+-|.+.. ..+++.| |- ++.+++.+|+.|. ..-++... .....
T Consensus 192 ~~~G~d~i~~~d~~~~---------~isp~~f~e~~~P~-~k~i~~~i~~~g~~~~~lH~cG-------------~~~~~ 248 (343)
T PF01208_consen 192 IEAGADGIFIFDSSGS---------LISPEMFEEFILPY-LKKIIDAIKEAGKDPVILHICG-------------NTTPI 248 (343)
T ss_dssp HHTT-SEEEEEETTGG---------GS-HHHHHHHTHHH-HHHHHHHHHHHETE-EEEEETT-------------HG-GG
T ss_pred HHhCCCcccccccccC---------CCCHHHHHHHHHHH-HHHHHHHHHHhCCCceEEEECC-------------chHHH
Confidence 4678888877772221 2233322 44 8999999999998 66554332 23346
Q ss_pred HHHHHHcCCcEEEeecCCCCCCCccccchHHHHHHHhcCCCceee
Q 016207 197 APLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCSIFYS 241 (393)
Q Consensus 197 ~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~AL~~agr~i~~s 241 (393)
++.+.+.|+|.+-+|... .+.++.++.|.++.+.
T Consensus 249 ~~~l~~~g~d~~~~~~~~-----------~~~~~~~~~~~~~~l~ 282 (343)
T PF01208_consen 249 LDDLADLGADVLSVDEKV-----------DLAEAKRKLGDKIVLM 282 (343)
T ss_dssp HHHHHTSS-SEEEE-TTS------------HHHHHHHHTTSSEEE
T ss_pred HHHHHhcCCCEEEEcCCC-----------CHHHHHHHhCCCeEEE
Confidence 778889999999887653 3455556667666554
No 222
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=22.91 E-value=8.3e+02 Score=26.03 Aligned_cols=53 Identities=25% Similarity=0.342 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHc-CCeEEEEe
Q 016207 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGK-GLKLGIYS 176 (393)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~-Gmk~Glw~ 176 (393)
+|.+.+.+.|+.+ .++|.+.|.|= |..|-..|. -+..|+..+++. ++.+++..
T Consensus 160 ~t~~y~~~~a~~l-----~~~Gad~I~Ik--------DtaG~l~P~------~v~~Lv~alk~~~~~pi~~H~ 213 (468)
T PRK12581 160 HTLNYYLSLVKEL-----VEMGADSICIK--------DMAGILTPK------AAKELVSGIKAMTNLPLIVHT 213 (468)
T ss_pred CcHHHHHHHHHHH-----HHcCCCEEEEC--------CCCCCcCHH------HHHHHHHHHHhccCCeEEEEe
Confidence 4566666666666 34566666663 234555555 378888888753 35666665
No 223
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=22.86 E-value=2.1e+02 Score=28.74 Aligned_cols=67 Identities=15% Similarity=0.110 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCC-CCCCCCccccCCCCCCCHHHHHHHHHHcCCeEEEEe
Q 016207 104 NISETIIKETADALVSTGLAELGYDHVNIDDCWSSPL-RDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYS 176 (393)
Q Consensus 104 ~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~-rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Glw~ 176 (393)
.++++.+....+.+ +-|+..+++-...-... +-..+.+..+.+.+=.|++.|++.+|+.|-++.+=+
T Consensus 30 ~~~~~~~~~y~~rA------~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~l~~~vh~~g~~~~~QL 97 (353)
T cd02930 30 DGIDRLAAFYAERA------RGGVGLIVTGGFAPNEAGKLGPGGPVLNSPRQAAGHRLITDAVHAEGGKIALQI 97 (353)
T ss_pred CCCHHHHHHHHHHh------cCCceEEEEeeEEeCCcccCCCCCcccCCHHHHHHHHHHHHHHHHcCCEEEeec
Confidence 46777777666654 22455554432221100 111122333334455579999999999999876543
No 224
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=22.74 E-value=61 Score=33.70 Aligned_cols=55 Identities=29% Similarity=0.352 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcCCeEEE
Q 016207 109 IIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGI 174 (393)
Q Consensus 109 ~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Gl 174 (393)
.+....++| +.+|++=|.+|.=|...++...+.... +|-+.|++.|++.|||+=.
T Consensus 17 ~~~~~L~~L-----K~~GV~GVmvdvWWGiVE~~~p~~ydW------s~Y~~l~~~vr~~GLk~~~ 71 (402)
T PF01373_consen 17 ALEAQLRAL-----KSAGVDGVMVDVWWGIVEGEGPQQYDW------SGYRELFEMVRDAGLKLQV 71 (402)
T ss_dssp HHHHHHHHH-----HHTTEEEEEEEEEHHHHTGSSTTB---------HHHHHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHH-----HHcCCcEEEEEeEeeeeccCCCCccCc------HHHHHHHHHHHHcCCeEEE
Confidence 677788887 778999999986554332322111111 2689999999999999754
No 225
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=22.67 E-value=4.2e+02 Score=25.95 Aligned_cols=49 Identities=12% Similarity=0.237 Sum_probs=37.5
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCcEEE
Q 016207 158 IKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLK 209 (393)
Q Consensus 158 l~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK 209 (393)
++.++++.+++|+++-++.+- ..|+. .-..+++.+.++.+.+.|++.|-
T Consensus 117 ~~~~i~~a~~~G~~v~~~~~d--~~~~~-r~~~~~~~~~~~~~~~~G~~~i~ 165 (280)
T cd07945 117 IREVIEYAIKNGIEVNIYLED--WSNGM-RDSPDYVFQLVDFLSDLPIKRIM 165 (280)
T ss_pred HHHHHHHHHhCCCEEEEEEEe--CCCCC-cCCHHHHHHHHHHHHHcCCCEEE
Confidence 678899999999998888764 23532 12357888889999999999754
No 226
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=22.56 E-value=6.8e+02 Score=23.88 Aligned_cols=100 Identities=17% Similarity=0.180 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHc-CC-eEEEEe--eCCc
Q 016207 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGK-GL-KLGIYS--DAGV 180 (393)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~-Gm-k~Glw~--~pg~ 180 (393)
.+++.+++.++.+ .++|.+.|.| -|..|..+|.. +..+++.+++. +. ++|+.. +.|.
T Consensus 138 ~~~~~~~~~~~~~-----~~~G~d~i~l--------~DT~G~~~P~~------v~~lv~~l~~~~~~~~l~~H~Hn~~Gl 198 (263)
T cd07943 138 ASPEELAEQAKLM-----ESYGADCVYV--------TDSAGAMLPDD------VRERVRALREALDPTPVGFHGHNNLGL 198 (263)
T ss_pred CCHHHHHHHHHHH-----HHcCCCEEEE--------cCCCCCcCHHH------HHHHHHHHHHhCCCceEEEEecCCcch
Q ss_pred cccCCCCcccccHHhHHHHHH--HcCCcEEEeecCCCCCCCccccchHHHHHHHhcCCC
Q 016207 181 FTCQVRPGSLFHEKDDAPLFA--SWGVDYLKYDNCFNLGIEPKKRYPPMRDALNETGCS 237 (393)
Q Consensus 181 ~~c~~~pgs~~~~~~~~~~~~--~wGvdylK~D~~~~~~~~~~~~y~~m~~AL~~agr~ 237 (393)
..+..++ +.|+++|--=.+..+...+......+..+|+..|..
T Consensus 199 --------------A~AN~laAi~aGa~~vd~s~~GlG~~aGN~~~E~lv~~L~~~g~~ 243 (263)
T cd07943 199 --------------AVANSLAAVEAGATRIDGSLAGLGAGAGNTPLEVLVAVLERMGIE 243 (263)
T ss_pred --------------HHHHHHHHHHhCCCEEEeecccccCCcCCccHHHHHHHHHhcCCC
No 227
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=22.44 E-value=5.2e+02 Score=24.86 Aligned_cols=72 Identities=13% Similarity=0.033 Sum_probs=42.3
Q ss_pred HHHHHHHHHHcCCeEEEEeeCC-c--cccCCCCcccccHHhHHHHHHHcCCcEEEeecCCCCCCCccccchHHHHHHHhc
Q 016207 158 IKALADYVHGKGLKLGIYSDAG-V--FTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNET 234 (393)
Q Consensus 158 l~~l~d~vh~~Gmk~Glw~~pg-~--~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~AL~~a 234 (393)
++.+++..|+.|+.+-+...+- . .+|. ..+.+....+...+.|.||||..|.. .-..|++....+
T Consensus 128 ~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~----~~~~i~~a~~~a~e~GAD~vKt~~~~--------~~~~l~~~~~~~ 195 (267)
T PRK07226 128 LGEVAEECEEWGMPLLAMMYPRGPGIKNEY----DPEVVAHAARVAAELGADIVKTNYTG--------DPESFREVVEGC 195 (267)
T ss_pred HHHHHHHHHHcCCcEEEEEecCCCccCCCc----cHHHHHHHHHHHHHHCCCEEeeCCCC--------CHHHHHHHHHhC
Confidence 6777777788888776654221 1 1121 11223344566779999999998531 124556555555
Q ss_pred CCCceee
Q 016207 235 GCSIFYS 241 (393)
Q Consensus 235 gr~i~~s 241 (393)
.-|++.+
T Consensus 196 ~ipV~a~ 202 (267)
T PRK07226 196 PVPVVIA 202 (267)
T ss_pred CCCEEEE
Confidence 6677665
No 228
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=22.35 E-value=5.6e+02 Score=24.11 Aligned_cols=119 Identities=13% Similarity=0.156 Sum_probs=64.0
Q ss_pred HHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCC-CccccCCCCCCCHHHHHHHHHHcCCeEEEEeeCC-ccccCCCC
Q 016207 110 IKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKG-QLVPDTITFPSGIKALADYVHGKGLKLGIYSDAG-VFTCQVRP 187 (393)
Q Consensus 110 i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G-~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Glw~~pg-~~~c~~~p 187 (393)
+.+.++.+ .++|++.|.|. -...+...+ ++. +..++.+.+.+++.|+++.+.. |- ...|...|
T Consensus 12 ~~~~~~~~-----~~~G~~~vel~---~~~~~~~~~~~~~------~~~~~~l~~~~~~~gl~ls~h~-p~~~nl~s~d~ 76 (273)
T smart00518 12 LYKAFIEA-----VDIGARSFQLF---LGNPRSWKGVRLS------EETAEKFKEALKENNIDVSVHA-PYLINLASPDK 76 (273)
T ss_pred HhHHHHHH-----HHcCCCEEEEE---CCCCCCCCCCCCC------HHHHHHHHHHHHHcCCCEEEEC-CceecCCCCCH
Confidence 34455555 56788888883 221111111 111 1247888888999999976532 32 12232233
Q ss_pred c----ccccHHhHHHHHHHcCCcEEEeecCCCCCCCccccchHHHHHHHh-----cCCCceeecc
Q 016207 188 G----SLFHEKDDAPLFASWGVDYLKYDNCFNLGIEPKKRYPPMRDALNE-----TGCSIFYSLC 243 (393)
Q Consensus 188 g----s~~~~~~~~~~~~~wGvdylK~D~~~~~~~~~~~~y~~m~~AL~~-----agr~i~~slc 243 (393)
. +.++++..++.-++.|.++|=+=..........+.+..+.+.++. .|-.+.++.+
T Consensus 77 ~~r~~~~~~l~~~i~~A~~lGa~~vv~h~g~~~~~~~e~~~~~~~~~l~~l~~~~~gv~l~lEn~ 141 (273)
T smart00518 77 EKVEKSIERLIDEIKRCEELGIKALVFHPGSYLKQSKEEALNRIIESLNEVIDETKGVVILLETT 141 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHHHHhccCCcEEEEecc
Confidence 3 345677778888899999988622221112223445555455432 3445556654
No 229
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=21.94 E-value=79 Score=30.05 Aligned_cols=59 Identities=17% Similarity=0.146 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcCCeEEEE
Q 016207 108 TIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIY 175 (393)
Q Consensus 108 ~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Glw 175 (393)
+.+++.++.+ +.+|.+.+++=-+...... +....-+++-..|+.++++++++|+++++=
T Consensus 90 ~~~~~~i~~a-----~~lGa~~i~~~~~~~~~~~----~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE 148 (275)
T PRK09856 90 DMIKLAMDMA-----KEMNAGYTLISAAHAGYLT----PPNVIWGRLAENLSELCEYAENIGMDLILE 148 (275)
T ss_pred HHHHHHHHHH-----HHhCCCEEEEcCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 3555566666 6788999888433221100 111111233446999999999999999874
No 230
>PLN02425 probable fructose-bisphosphate aldolase
Probab=21.88 E-value=1.5e+02 Score=30.53 Aligned_cols=57 Identities=16% Similarity=0.237 Sum_probs=38.6
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCCc-----ccccHHhHHHHHHHcCCcEEEeecCCC
Q 016207 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPG-----SLFHEKDDAPLFASWGVDYLKYDNCFN 215 (393)
Q Consensus 159 ~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pg-----s~~~~~~~~~~~~~wGvdylK~D~~~~ 215 (393)
++++++++++|+-+||=++-|.....+.++ -++=+....+.+.+-|++|=||-....
T Consensus 122 ~p~~d~L~~~GIVPGIKVDkGl~~l~G~~~e~~t~GLDgL~~R~~~y~~~GarFAKWRsVik 183 (390)
T PLN02425 122 KKFVDCLRDQNIVPGIKVDKGLVPLPGSNNESWCQGLDGLASRSAEYYKQGARFAKWRTVVS 183 (390)
T ss_pred cCHHHHHHHCCceeeEEecCCCCcCCCCCCCccCCChHHHHHHHHHHHHcCCceeehheeec
Confidence 789999999999999999877533322221 122233344455566999999988644
No 231
>PRK09505 malS alpha-amylase; Reviewed
Probab=21.88 E-value=2.9e+02 Score=30.86 Aligned_cols=65 Identities=18% Similarity=0.214 Sum_probs=40.8
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCC------CC-------CCCCCCccccC----CCCC--CCHHHHHHHH
Q 016207 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSS------PL-------RDLKGQLVPDT----ITFP--SGIKALADYV 165 (393)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~------~~-------rd~~G~~~~d~----~kFP--~Gl~~l~d~v 165 (393)
=+-..|.+.++.+ +++|++.|.|=--+.. .. ....|.+..|- ..|- ..++.|++.+
T Consensus 227 Gdl~Gi~~kLdyl-----~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~a 301 (683)
T PRK09505 227 GDLRGLTEKLDYL-----QQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEA 301 (683)
T ss_pred CCHHHHHHhhHHH-----HHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHH
Confidence 3678888889988 7788888765322211 00 01135555442 2342 2499999999
Q ss_pred HHcCCeEEE
Q 016207 166 HGKGLKLGI 174 (393)
Q Consensus 166 h~~Gmk~Gl 174 (393)
|++||++-+
T Consensus 302 H~~Gi~Vil 310 (683)
T PRK09505 302 HQRGIRILF 310 (683)
T ss_pred HHCCCEEEE
Confidence 999999543
No 232
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=21.82 E-value=2.1e+02 Score=23.27 Aligned_cols=53 Identities=15% Similarity=0.219 Sum_probs=37.1
Q ss_pred CCCCccccCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCc
Q 016207 143 LKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVD 206 (393)
Q Consensus 143 ~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvd 206 (393)
-+|-+.-..+-+|. -...+++++++|.++-+-++.... -.+..++.|++.||+
T Consensus 5 ~dGvl~~g~~~ipg-a~e~l~~L~~~g~~~~~lTNns~~----------s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 5 LDGVLYNGNEPIPG-AVEALDALRERGKPVVFLTNNSSR----------SREEYAKKLKKLGIP 57 (101)
T ss_dssp STTTSEETTEE-TT-HHHHHHHHHHTTSEEEEEES-SSS-----------HHHHHHHHHHTTTT
T ss_pred CccEeEeCCCcCcC-HHHHHHHHHHcCCCEEEEeCCCCC----------CHHHHHHHHHhcCcC
Confidence 34555555566665 789999999999999887765432 224577888999998
No 233
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=21.77 E-value=1.3e+02 Score=27.54 Aligned_cols=24 Identities=33% Similarity=0.420 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHcCCeEEEEeeCCc
Q 016207 157 GIKALADYVHGKGLKLGIYSDAGV 180 (393)
Q Consensus 157 Gl~~l~d~vh~~Gmk~Glw~~pg~ 180 (393)
-++.+++.+++.|.++|||+.+..
T Consensus 111 ~~~~f~~~~~~~G~~~~iYt~~~~ 134 (196)
T cd06416 111 FLQELVSAAKALGLKVGIYSSQYD 134 (196)
T ss_pred HHHHHHHHHHHhCCeEEEEcCcch
Confidence 378899999999999999998753
No 234
>cd08576 GDPD_like_SMaseD_PLD Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase-like domain (GDPD-like) present in sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.4) from spider venom, the Corynebacterium pseudotuberculosis Phospholipase D (PLD)-like protein from pathogenic bacteria, and the Ajellomyces capsulatus H143 PLD-like protein from ascomycetes. Spider SMases D and bacterial PLD proteins catalyze the Mg2+-dependent hydrolysis of sphingomyelin producing choline and ceramide 1-phosphate (C1P), which possess a number of biological functions, such as regulating cell proliferation and apoptosis, participating in inflammatory responses, and playing a key role in phagocytosis. In the presence of Mg2+, SMases D can function as lysophospholipase D and hydrolyze lysophosphatidylcholine (LPC) to choline
Probab=21.71 E-value=3.8e+02 Score=26.35 Aligned_cols=45 Identities=11% Similarity=0.053 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHcCC-----eEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCcEEEeecC
Q 016207 155 PSGIKALADYVHGKGL-----KLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNC 213 (393)
Q Consensus 155 P~Gl~~l~d~vh~~Gm-----k~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~~ 213 (393)
+.+.+.|.+.+|++|. ++-+|+--. ...++.+.++|+|.|=.|+-
T Consensus 190 ~~~~~~lv~~~~~rd~~g~i~kV~vWTVn~--------------~~~~~~ll~~GVDGIITD~P 239 (265)
T cd08576 190 YRTCARLREAIKKRDTPGYLGKVYGWTSDK--------------GSSVRKLLRLGVDGIITNYP 239 (265)
T ss_pred ccccHHHHHHHHHcCCCCcCCeEEEEeCCC--------------HHHHHHHHhcCCCEEEECCH
Confidence 4678999999999999 788886432 14677888999999988875
No 235
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=21.55 E-value=1.1e+02 Score=27.02 Aligned_cols=67 Identities=12% Similarity=0.193 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcCCeEEEEeeCCc
Q 016207 107 ETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGV 180 (393)
Q Consensus 107 e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Glw~~pg~ 180 (393)
.+.+++.++.+ +.+|.+++++--|+...... .....+-+++=..|+.+++++.+.|+++.|-..++.
T Consensus 70 ~~~~~~~i~~a-----~~lg~~~i~~~~g~~~~~~~--~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~ 136 (213)
T PF01261_consen 70 LEYLKKAIDLA-----KRLGAKYIVVHSGRYPSGPE--DDTEENWERLAENLRELAEIAEEYGVRIALENHPGP 136 (213)
T ss_dssp HHHHHHHHHHH-----HHHTBSEEEEECTTESSSTT--SSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSS
T ss_pred HHHHHHHHHHH-----HHhCCCceeecCcccccccC--CCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCc
Confidence 56788888888 67899999998773211000 111112222333689999999999999998766543
No 236
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=21.49 E-value=6.6e+02 Score=23.44 Aligned_cols=112 Identities=17% Similarity=0.101 Sum_probs=68.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcC--CeEEEEeeCCc
Q 016207 103 CNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKG--LKLGIYSDAGV 180 (393)
Q Consensus 103 ~~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~G--mk~Glw~~pg~ 180 (393)
..++.+..++.++.+ .++|+++|.+ |.... -.. . |. .++ ...+++++.+.+ .++..+...+
T Consensus 14 ~~~s~e~~~~i~~~L-----~~~GV~~IEv--g~~~~-~~~----~--p~-~~~-~~~~i~~l~~~~~~~~~~~l~~~~- 76 (265)
T cd03174 14 ATFSTEDKLEIAEAL-----DEAGVDSIEV--GSGAS-PKA----V--PQ-MED-DWEVLRAIRKLVPNVKLQALVRNR- 76 (265)
T ss_pred CCCCHHHHHHHHHHH-----HHcCCCEEEe--ccCcC-ccc----c--cc-CCC-HHHHHHHHHhccCCcEEEEEccCc-
Confidence 356889999999999 5678888887 44331 111 1 11 223 577888888877 6665544332
Q ss_pred cccCCCCcccccHHhHHHHHHHcCCcEEEeecCCCCC-------CCccccchHHHHH---HHhcCCCceeeccC
Q 016207 181 FTCQVRPGSLFHEKDDAPLFASWGVDYLKYDNCFNLG-------IEPKKRYPPMRDA---LNETGCSIFYSLCE 244 (393)
Q Consensus 181 ~~c~~~pgs~~~~~~~~~~~~~wGvdylK~D~~~~~~-------~~~~~~y~~m~~A---L~~agr~i~~slc~ 244 (393)
..+++...+.|++.|-+=.-..+. ....+.+..+.++ +++.|-++.++++.
T Consensus 77 -------------~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~ 137 (265)
T cd03174 77 -------------EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLED 137 (265)
T ss_pred -------------hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 567888899999988876543321 1111233333333 35567777777643
No 237
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=21.35 E-value=83 Score=36.67 Aligned_cols=46 Identities=17% Similarity=0.308 Sum_probs=32.7
Q ss_pred ccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcCCeEEEEee
Q 016207 124 ELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSD 177 (393)
Q Consensus 124 ~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Glw~~ 177 (393)
++||+|+.++|-=|.. |++.+ +.-|- |+.|.+-.+++|+.||+=++
T Consensus 260 ~~g~~~~~~~~~~f~~------dl~~~-~a~~m-~~~l~~~~~~~~~~fgvk~t 305 (1019)
T PRK09853 260 KMGFDYIGLKEEHFDH------DLQYT-DAVEM-LERLMALAKEKGLGFGVKLT 305 (1019)
T ss_pred hcCCceEecchhhccc------ccchh-HHHHH-HHHHHHHHHHcCceeeEEEe
Confidence 4699999999877762 23322 11222 67888888999999999875
No 238
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=21.21 E-value=1.4e+02 Score=30.00 Aligned_cols=85 Identities=18% Similarity=0.096 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcCCeEEE--EeeCCccc
Q 016207 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGI--YSDAGVFT 182 (393)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Gl--w~~pg~~~ 182 (393)
.+.++|++.++.+ .+.|+..|.|-+|-... . .+ +=+..+++.|++.+..+.+ +...+...
T Consensus 70 ls~eeI~e~~~~~-----~~~G~~~i~l~gG~~p~-------~-----~~-~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~ 131 (343)
T TIGR03551 70 LSLEEIAERAAEA-----WKAGATEVCIQGGIHPD-------L-----DG-DFYLDILRAVKEEVPGMHIHAFSPMEVYY 131 (343)
T ss_pred CCHHHHHHHHHHH-----HHCCCCEEEEEeCCCCC-------C-----CH-HHHHHHHHHHHHHCCCceEEecCHHHHHH
Confidence 6899999999988 55678788876553220 0 11 1268899999987533322 21111100
Q ss_pred cCCCCcccccHHhHHHHHHHcCCcEEE
Q 016207 183 CQVRPGSLFHEKDDAPLFASWGVDYLK 209 (393)
Q Consensus 183 c~~~pgs~~~~~~~~~~~~~wGvdylK 209 (393)
..+..|.. ..+.++.|++.|++.+-
T Consensus 132 ~~~~~g~~--~~e~l~~LkeAGl~~i~ 156 (343)
T TIGR03551 132 GARNSGLS--VEEALKRLKEAGLDSMP 156 (343)
T ss_pred HHHHcCCC--HHHHHHHHHHhCccccc
Confidence 00111221 25678899999999774
No 239
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=21.21 E-value=7.1e+02 Score=24.50 Aligned_cols=75 Identities=15% Similarity=0.228 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHH-cCC-eEEEEeeCCcc
Q 016207 104 NISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHG-KGL-KLGIYSDAGVF 181 (393)
Q Consensus 104 ~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~-~Gm-k~Glw~~pg~~ 181 (393)
.++.+++.+.++.+. +.|++.|.+= . |+.... | .+..+++++++ .|+ ++.|-++. .
T Consensus 42 ~ls~eei~~~i~~~~-----~~gv~~V~lt----G------GEPll~----~-~l~~li~~i~~~~gi~~v~itTNG-~- 99 (334)
T TIGR02666 42 LLTFEEIERLVRAFV-----GLGVRKVRLT----G------GEPLLR----K-DLVELVARLAALPGIEDIALTTNG-L- 99 (334)
T ss_pred CCCHHHHHHHHHHHH-----HCCCCEEEEE----C------cccccc----C-CHHHHHHHHHhcCCCCeEEEEeCc-h-
Confidence 478899999999884 4567777661 1 344444 3 38889998887 577 66664432 2
Q ss_pred ccCCCCcccccHHhHHHHHHHcCCcEEEe
Q 016207 182 TCQVRPGSLFHEKDDAPLFASWGVDYLKY 210 (393)
Q Consensus 182 ~c~~~pgs~~~~~~~~~~~~~wGvdylK~ 210 (393)
.+...++.+++.|++.|-+
T Consensus 100 ----------ll~~~~~~L~~~gl~~v~I 118 (334)
T TIGR02666 100 ----------LLARHAKDLKEAGLKRVNV 118 (334)
T ss_pred ----------hHHHHHHHHHHcCCCeEEE
Confidence 1234567778888887663
No 240
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=21.08 E-value=7.7e+02 Score=27.05 Aligned_cols=54 Identities=20% Similarity=0.286 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHH-cCCeEEEEee
Q 016207 105 ISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHG-KGLKLGIYSD 177 (393)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~-~Gmk~Glw~~ 177 (393)
++.+.+.+.++.+ .++|.+.+.|= |..|-+.|. -+..|+..+++ .++.+|+.+-
T Consensus 152 ~~~~~~~~~a~~l-----~~~Gad~i~i~--------Dt~G~l~P~------~~~~lv~~lk~~~~~pi~~H~H 206 (593)
T PRK14040 152 HTLQTWVDLAKQL-----EDMGVDSLCIK--------DMAGLLKPY------AAYELVSRIKKRVDVPLHLHCH 206 (593)
T ss_pred cCHHHHHHHHHHH-----HHcCCCEEEEC--------CCCCCcCHH------HHHHHHHHHHHhcCCeEEEEEC
Confidence 4566777777766 45566666663 344555555 48888888875 4677888763
No 241
>cd08602 GDPD_ScGlpQ1_like Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively.
Probab=20.87 E-value=2.4e+02 Score=28.04 Aligned_cols=51 Identities=24% Similarity=0.150 Sum_probs=34.9
Q ss_pred HHHHHHHHHHcCCeEEEEeeCCccccCCCCcccccH---HhHHHHHHHcCCcEEEeec
Q 016207 158 IKALADYVHGKGLKLGIYSDAGVFTCQVRPGSLFHE---KDDAPLFASWGVDYLKYDN 212 (393)
Q Consensus 158 l~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pgs~~~~---~~~~~~~~~wGvdylK~D~ 212 (393)
.+.+++.+|+.|+++-+|+--.. +...| +.|. ...++.+.++|||+|=-|+
T Consensus 255 ~~~~v~~a~~~gl~v~~wTvn~~--~~~~~--~~~~~~~~~~~~~l~~~GVdgiiTD~ 308 (309)
T cd08602 255 PTDLVEDAHAAGLQVHPYTFRNE--NTFLP--PDFFGDPYAEYRAFLDAGVDGLFTDF 308 (309)
T ss_pred ccHHHHHHHHcCCEEEEEEecCC--CcccC--cccCCCHHHHHHHHHHhCCCEEeCCC
Confidence 45899999999999999985431 00111 2222 2456777789999997775
No 242
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=20.86 E-value=4.8e+02 Score=24.55 Aligned_cols=78 Identities=9% Similarity=0.008 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcCCeEEEEeeCCccccCCC---
Q 016207 110 IKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGIYSDAGVFTCQVR--- 186 (393)
Q Consensus 110 i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Glw~~pg~~~c~~~--- 186 (393)
+.+.++.+ +++||+.|-| ..-++..++.+.+.+.+.||++....-|-.......
T Consensus 17 l~~~l~~~-----a~~Gf~~VEl------------------~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~ 73 (258)
T PRK09997 17 FLARFEKA-----AQCGFRGVEF------------------MFPYDYDIEELKQVLASNKLEHTLHNLPAGDWAAGERGI 73 (258)
T ss_pred HHHHHHHH-----HHhCCCEEEE------------------cCCCCCCHHHHHHHHHHcCCcEEEEcCCCCccccCcCcc
Q ss_pred -------CcccccHHhHHHHHHHcCCcEEEe
Q 016207 187 -------PGSLFHEKDDAPLFASWGVDYLKY 210 (393)
Q Consensus 187 -------pgs~~~~~~~~~~~~~wGvdylK~ 210 (393)
+....+++..++.-++.|..+|-+
T Consensus 74 ~~~~~~~~~~~~~~~~~i~~a~~lga~~i~~ 104 (258)
T PRK09997 74 ACIPGREEEFRDGVAAAIRYARALGNKKINC 104 (258)
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHhCCCEEEE
No 243
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=20.83 E-value=8e+02 Score=26.80 Aligned_cols=224 Identities=19% Similarity=0.197 Sum_probs=107.6
Q ss_pred CCCCCCceEEechhhhCCCCCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCC--CCccccCCCCCC-------
Q 016207 86 GLASTPQMGWNSWNFFACNISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLK--GQLVPDTITFPS------- 156 (393)
Q Consensus 86 ~~~~~pp~GwnSW~~~~~~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~--G~~~~d~~kFP~------- 156 (393)
...+-|=.||=| .|....+.+...+.++.|.+ +-++-++.= -|+-...... +.-.++ ..|++
T Consensus 98 dW~~fPRYGfls--~f~~~~~~~~~~~~i~~L~~-----yHIN~~QFY-DW~~rH~~Pl~~~~~~~~-~~w~D~~~r~i~ 168 (559)
T PF13199_consen 98 DWTRFPRYGFLS--DFDKSKSAEDIEAEIDQLNR-----YHINGLQFY-DWMYRHHKPLPGTNGQPD-QTWTDWANRQIS 168 (559)
T ss_dssp STTSS--EEEE-----GGGGGHHHHHHHHHHHHH-----TT--EEEET-S--SBTTB-S-SSS-EEE--TT-TTT--EEE
T ss_pred CcccCCcceEec--CCCCcCCchhHHHHHHHHHh-----hCcCeEEEE-eeccccCCcCCCCCCchh-hhhhhhcCCEeh
Confidence 345556666654 23333578899999999954 344555543 2554221110 000111 24443
Q ss_pred --CHHHHHHHHHHcCCeEEEEeeCCc------------------ccc---------------------CCCCcccccH-H
Q 016207 157 --GIKALADYVHGKGLKLGIYSDAGV------------------FTC---------------------QVRPGSLFHE-K 194 (393)
Q Consensus 157 --Gl~~l~d~vh~~Gmk~Glw~~pg~------------------~~c---------------------~~~pgs~~~~-~ 194 (393)
=+|..++.+|+.||+.-.|...-. ..+ +.+|+=+.|+ +
T Consensus 169 ~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~~~~~~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~WQ~yI~~ 248 (559)
T PF13199_consen 169 TSTVKDYINAAHKYGMKAMAYNMIYAANNNYEEDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEWQNYIIN 248 (559)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEESSEEETT--S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcceehhHhhhccccCcccccCCchhhhhhccCCCccceeecCcccccceEEecCCCHHHHHHHHH
Confidence 379999999999999998864310 000 2233445666 5
Q ss_pred hHHHHHHHcCCcEEEeecCCCCC---------C-CccccchHHHHHHHhcC--CCceee-ccCCCCCChhh-h--hhhcc
Q 016207 195 DDAPLFASWGVDYLKYDNCFNLG---------I-EPKKRYPPMRDALNETG--CSIFYS-LCEWGVDDPAL-W--AGKVG 258 (393)
Q Consensus 195 ~~~~~~~~wGvdylK~D~~~~~~---------~-~~~~~y~~m~~AL~~ag--r~i~~s-lc~~g~~~P~~-w--~~~~~ 258 (393)
+..+.++..|||.+-+|-.+... . .....|..+.++++++. .++++. ...||...-+. - ..-|.
T Consensus 249 q~~~~~~~~gFDG~hlDq~G~~~~~~d~~G~~i~~l~~~y~~Fi~~~K~~~~~k~lv~N~V~~~g~~~~a~~~~~d~lY~ 328 (559)
T PF13199_consen 249 QMNKAIQNFGFDGWHLDQLGNRGTVYDYDGNKIYDLSDGYASFINAMKEALPDKYLVFNAVSGYGIEQIAKTSKVDFLYN 328 (559)
T ss_dssp HHHHHHHHHT--EEEEE-S--EEEEGGTT---GGECHHHHHHHHHHHHHHSTTSEEEEB-GGGTTHHHHTT-S--SSEEE
T ss_pred HHHHHHHccCCceEeeeccCCCCccccCCCCCchhhHHHHHHHHHHHHHhCCCCceeeeccCccchhhhhcccccceeee
Confidence 56677889999999999976321 1 12455667777776554 445554 23343211000 0 01245
Q ss_pred ceeeecCCCCCChhHHHHHHHhhcccccccCC----CCccCCCcccccCCCcChhhhhhHHHHHHHhcCceeecCC
Q 016207 259 NSWRTTGDINDTWASMTSIADINDKWASYAGP----GGWNDPDMLEVGNGGMSYQEYRAHFSIWALMKAPLLIGCD 330 (393)
Q Consensus 259 n~~Ris~Di~~~W~~~~~~~~~~~~~~~~~gp----g~wnDpDmL~vg~~~lT~~E~rt~~slwa~~gsPLlig~D 330 (393)
-.| |..++...+.+.++.+..++.-.+. ..|-.. --|+.-.-+-.++.|.-|+.|.+|++
T Consensus 329 EvW----~~~~~Y~~Lk~~i~~~r~~~~~~gk~~V~AAYmn~--------fn~~~vlLtdA~i~A~Gg~HlelGd~ 392 (559)
T PF13199_consen 329 EVW----DDYDTYGDLKRIIDQNRKYTSSGGKSTVVAAYMNY--------FNTPSVLLTDAVIFASGGSHLELGDG 392 (559)
T ss_dssp E------SBS-BHHHHHHHHHHHHHHH---S--EEEE---------------HHHHHHHHHHHHHTT-EEE-ETTS
T ss_pred ecc----cccccHHHHHHHHHHHhhhhccccchhhhHHHhhh--------ccchhhHHHHHHHHHCCCceeeecCC
Confidence 566 4455667777777654433111111 011111 12344555667788888999999873
No 244
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=20.80 E-value=3.3e+02 Score=23.87 Aligned_cols=85 Identities=18% Similarity=0.186 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHH---cCCeEEEEeeCCcccc
Q 016207 107 ETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHG---KGLKLGIYSDAGVFTC 183 (393)
Q Consensus 107 e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~---~Gmk~Glw~~pg~~~c 183 (393)
.+...+.++.+ .++|.+.+.+-.-+... .+ + + +.++......+.+ .++.+-+|..|+..
T Consensus 64 ~~~~~~~a~~a-----~~~Gad~i~v~~~~~~~-~~--~----~----~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~-- 125 (201)
T cd00945 64 TEVKVAEVEEA-----IDLGADEIDVVINIGSL-KE--G----D----WEEVLEEIAAVVEAADGGLPLKVILETRGL-- 125 (201)
T ss_pred HHHHHHHHHHH-----HHcCCCEEEEeccHHHH-hC--C----C----HHHHHHHHHHHHHHhcCCceEEEEEECCCC--
Confidence 56667777777 56688888875443220 00 0 0 1234444444444 38999999998652
Q ss_pred CCCCcccccHHhHHHHHHHcCCcEEEeecC
Q 016207 184 QVRPGSLFHEKDDAPLFASWGVDYLKYDNC 213 (393)
Q Consensus 184 ~~~pgs~~~~~~~~~~~~~wGvdylK~D~~ 213 (393)
...+.+....+.+.+-|+++||.-..
T Consensus 126 ----~~~~~~~~~~~~~~~~g~~~iK~~~~ 151 (201)
T cd00945 126 ----KTADEIAKAARIAAEAGADFIKTSTG 151 (201)
T ss_pred ----CCHHHHHHHHHHHHHhCCCEEEeCCC
Confidence 11223444456667899999995543
No 245
>cd08571 GDPD_SHV3_plant Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase (GDPD) domain present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserv
Probab=20.76 E-value=2.4e+02 Score=27.87 Aligned_cols=54 Identities=17% Similarity=0.004 Sum_probs=34.5
Q ss_pred HHHHHHHHHcCCeEEEEeeCCcc--ccCCCCcccccHHhHHHHHHHc-CCcEEEeecCC
Q 016207 159 KALADYVHGKGLKLGIYSDAGVF--TCQVRPGSLFHEKDDAPLFASW-GVDYLKYDNCF 214 (393)
Q Consensus 159 ~~l~d~vh~~Gmk~Glw~~pg~~--~c~~~pgs~~~~~~~~~~~~~w-GvdylK~D~~~ 214 (393)
..+++.+|+.|+++-.|+-.... .+-+ -..+......+.+... |||.|=-|+-.
T Consensus 241 ~~~V~~ah~~Gl~V~~wTvn~~~~~~~~~--~~~~~~~~~~~~~~~~~gVDGiiTD~P~ 297 (302)
T cd08571 241 TSVVQDAHKAGLEVYVSGFANEFVSLAYD--YSADPTLEILSFVGNGNSVDGVITDFPA 297 (302)
T ss_pred cHHHHHHHHcCCEEEEEEEecCccccccc--ccCCHHHHHHHHHHhcCCCCEEEecCch
Confidence 58899999999999999843210 0100 0012233445566666 99999988753
No 246
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=20.60 E-value=1.9e+02 Score=28.91 Aligned_cols=58 Identities=19% Similarity=0.295 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEe---CC-CcCCCCCCCC----------CCccccCCCCCCCHHHHHHHHHHcCC
Q 016207 105 ISETIIKETADALVSTGLAELGYDHVNI---DD-CWSSPLRDLK----------GQLVPDTITFPSGIKALADYVHGKGL 170 (393)
Q Consensus 105 i~e~~i~~~ad~~~~~gl~~~G~~~~~I---DD-GW~~~~rd~~----------G~~~~d~~kFP~Gl~~l~d~vh~~Gm 170 (393)
++-+.|++.+|.|+..+ ++.+.+ || ||--. -..+ |..+.+ -++.|++|.+++|+
T Consensus 15 ~~~~~ik~~Id~ma~~K-----lN~lh~HltDd~~~rle-~~~~P~lt~~g~~~~~yT~~------di~elv~yA~~rgI 82 (311)
T cd06570 15 IPVAVIKRQLDAMASVK-----LNVFHWHLTDDQGFRIE-SKKYPKLQQKASDGLYYTQE------QIREVVAYARDRGI 82 (311)
T ss_pred cCHHHHHHHHHHHHHhC-----CeEEEEEEecCCCceee-cCCCccccccCCCCCccCHH------HHHHHHHHHHHcCC
Confidence 67899999999996544 444443 44 77321 0111 112211 38999999999999
Q ss_pred eEEE
Q 016207 171 KLGI 174 (393)
Q Consensus 171 k~Gl 174 (393)
++--
T Consensus 83 ~vIP 86 (311)
T cd06570 83 RVVP 86 (311)
T ss_pred EEEE
Confidence 8643
No 247
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=20.53 E-value=2.2e+02 Score=28.88 Aligned_cols=79 Identities=25% Similarity=0.397 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHcCCeEEE-------EeeCCcccc
Q 016207 111 KETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGKGLKLGI-------YSDAGVFTC 183 (393)
Q Consensus 111 ~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~Gmk~Gl-------w~~pg~~~c 183 (393)
++..+.| ++.|+++|-|- =|-.... .|....+. ...+++.+|++||++=| |.+|+.
T Consensus 27 ~d~~~il-----k~~G~N~vRlR-vwv~P~~--~g~~~~~~------~~~~akrak~~Gm~vlldfHYSD~WaDPg~--- 89 (332)
T PF07745_consen 27 KDLFQIL-----KDHGVNAVRLR-VWVNPYD--GGYNDLED------VIALAKRAKAAGMKVLLDFHYSDFWADPGK--- 89 (332)
T ss_dssp --HHHHH-----HHTT--EEEEE-E-SS-TT--TTTTSHHH------HHHHHHHHHHTT-EEEEEE-SSSS--BTTB---
T ss_pred CCHHHHH-----HhcCCCeEEEE-eccCCcc--cccCCHHH------HHHHHHHHHHCCCeEEEeecccCCCCCCCC---
Q ss_pred CCCCcc-------------cccHHhHHHHHHHcCCc
Q 016207 184 QVRPGS-------------LFHEKDDAPLFASWGVD 206 (393)
Q Consensus 184 ~~~pgs-------------~~~~~~~~~~~~~wGvd 206 (393)
...|.+ ++|....+..|++.|+.
T Consensus 90 Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~~G~~ 125 (332)
T PF07745_consen 90 QNKPAAWANLSFDQLAKAVYDYTKDVLQALKAAGVT 125 (332)
T ss_dssp -B--TTCTSSSHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred CCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
No 248
>PLN02227 fructose-bisphosphate aldolase I
Probab=20.48 E-value=1.6e+02 Score=30.38 Aligned_cols=57 Identities=16% Similarity=0.202 Sum_probs=38.8
Q ss_pred HHHHHHHHHcCCeEEEEeeCCccccCCCCc-----ccccHHhHHHHHHHcCCcEEEeecCCC
Q 016207 159 KALADYVHGKGLKLGIYSDAGVFTCQVRPG-----SLFHEKDDAPLFASWGVDYLKYDNCFN 215 (393)
Q Consensus 159 ~~l~d~vh~~Gmk~Glw~~pg~~~c~~~pg-----s~~~~~~~~~~~~~wGvdylK~D~~~~ 215 (393)
++++++++++|+-+||=++-|.....+.++ -++-+....+.+++-|++|=||-....
T Consensus 131 ~pf~d~L~~~GIVPGIKVDKGl~~l~g~~~e~~tqGLDgL~~R~~~Y~~~GarFAKWRsVik 192 (399)
T PLN02227 131 KKMVDVLVEQNIVPGIKVDKGLVPLVGSYDESWCQGLDGLASRTAAYYQQGARFAKWRTVVS 192 (399)
T ss_pred cCHHHHHHHCCCeeeEEcCCCcccCCCCCCCccCCChHHHHHHHHHHHHcCCceeehheeec
Confidence 788999999999999999877533322222 123333444556666999999988643
No 249
>PLN02784 alpha-amylase
Probab=20.32 E-value=2.3e+02 Score=32.63 Aligned_cols=60 Identities=22% Similarity=0.220 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCc-----cccCCCCC--CCHHHHHHHHHHcCCeEEE
Q 016207 107 ETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQL-----VPDTITFP--SGIKALADYVHGKGLKLGI 174 (393)
Q Consensus 107 e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~-----~~d~~kFP--~Gl~~l~d~vh~~Gmk~Gl 174 (393)
...|.+.++.+ +++|+..|.|=--.... ...|++ .+| .+|- +.|+.|++.+|++||++=+
T Consensus 520 ~~~I~ekldyL-----~~LG~taIWLpP~~~s~--s~~GY~p~D~y~ld-s~yGT~~ELk~LI~a~H~~GIkVIl 586 (894)
T PLN02784 520 YMELGEKAAEL-----SSLGFTVVWLPPPTESV--SPEGYMPKDLYNLN-SRYGTIDELKDLVKSFHEVGIKVLG 586 (894)
T ss_pred HHHHHHHHHHH-----HHhCCCEEEeCCCCCCC--CCCCcCcccccccC-cCcCCHHHHHHHHHHHHHCCCEEEE
Confidence 57888889988 77888888765433221 112332 234 4664 2499999999999998643
No 250
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=20.17 E-value=1.5e+02 Score=30.23 Aligned_cols=91 Identities=18% Similarity=0.158 Sum_probs=60.1
Q ss_pred CCceEEechhhhCC-------CCCHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHH
Q 016207 90 TPQMGWNSWNFFAC-------NISETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALA 162 (393)
Q Consensus 90 ~pp~GwnSW~~~~~-------~i~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~ 162 (393)
++..+||+-.+.+. -.+.++|++.|..+ ++.|...|++=.+|-. +| ..++. +..++
T Consensus 62 ~edC~yC~qS~~~~~~~~~~~l~~~eeIle~Ak~a-----k~~Ga~r~c~~aagr~-----~~------~~~~~-i~~~v 124 (335)
T COG0502 62 PEDCAYCSQSARYKTGVKARKLMEVEEILEAAKKA-----KAAGATRFCMGAAGRG-----PG------RDMEE-VVEAI 124 (335)
T ss_pred CCCCCCccccccCcCCCchhhcCCHHHHHHHHHHH-----HHcCCceEEEEEeccC-----CC------ccHHH-HHHHH
Confidence 56788888877552 36889999999999 6678555666566743 21 12222 67777
Q ss_pred HHHH-HcCCeEEEEeeCCccccCCCCcccccHHhHHHHHHHcCCcEEEe
Q 016207 163 DYVH-GKGLKLGIYSDAGVFTCQVRPGSLFHEKDDAPLFASWGVDYLKY 210 (393)
Q Consensus 163 d~vh-~~Gmk~Glw~~pg~~~c~~~pgs~~~~~~~~~~~~~wGvdylK~ 210 (393)
..|+ +.||+. +...|+.+ .+.++.+++.|+|++-.
T Consensus 125 ~~Vk~~~~le~--c~slG~l~-----------~eq~~~L~~aGvd~ynh 160 (335)
T COG0502 125 KAVKEELGLEV--CASLGMLT-----------EEQAEKLADAGVDRYNH 160 (335)
T ss_pred HHHHHhcCcHH--hhccCCCC-----------HHHHHHHHHcChhheec
Confidence 7777 777654 22333211 35678899999999765
No 251
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=20.07 E-value=5.8e+02 Score=24.45 Aligned_cols=90 Identities=17% Similarity=0.051 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHHcCCcccCceEEEeCCCcCCCCCCCCCCccccCCCCCCCHHHHHHHHHHc-CCeEEEEeeCCccccC
Q 016207 106 SETIIKETADALVSTGLAELGYDHVNIDDCWSSPLRDLKGQLVPDTITFPSGIKALADYVHGK-GLKLGIYSDAGVFTCQ 184 (393)
Q Consensus 106 ~e~~i~~~ad~~~~~gl~~~G~~~~~IDDGW~~~~rd~~G~~~~d~~kFP~Gl~~l~d~vh~~-Gmk~Glw~~pg~~~c~ 184 (393)
+.+.+.+.|+.+ .+.|++.|.|.-+= . .... +. +-.+-|.-+..+++.+++. ++.+.+=+.+..
T Consensus 109 ~~~~~~~~a~~~-----~~~G~d~ielN~~c-P-~~~~-~~---~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~---- 173 (289)
T cd02810 109 SKEDYVELARKI-----ERAGAKALELNLSC-P-NVGG-GR---QLGQDPEAVANLLKAVKAAVDIPLLVKLSPYF---- 173 (289)
T ss_pred CHHHHHHHHHHH-----HHhCCCEEEEEcCC-C-CCCC-Cc---ccccCHHHHHHHHHHHHHccCCCEEEEeCCCC----
Confidence 778899999988 45688888887531 1 1110 00 0012234477888888875 444444333321
Q ss_pred CCCcccccHHhHHHHHHHcCCcEEEeecCC
Q 016207 185 VRPGSLFHEKDDAPLFASWGVDYLKYDNCF 214 (393)
Q Consensus 185 ~~pgs~~~~~~~~~~~~~wGvdylK~D~~~ 214 (393)
..+.....++.+.+.|+|+|.+-...
T Consensus 174 ----~~~~~~~~a~~l~~~Gad~i~~~~~~ 199 (289)
T cd02810 174 ----DLEDIVELAKAAERAGADGLTAINTI 199 (289)
T ss_pred ----CHHHHHHHHHHHHHcCCCEEEEEccc
Confidence 12234567788899999999986543
No 252
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=20.01 E-value=2.6e+02 Score=22.48 Aligned_cols=50 Identities=22% Similarity=0.270 Sum_probs=31.7
Q ss_pred ccCceEEEeCCCcCCCCCCCCCC-ccccCCCCCCCHHHHHHHHHHcCCeEEEEeeCC
Q 016207 124 ELGYDHVNIDDCWSSPLRDLKGQ-LVPDTITFPSGIKALADYVHGKGLKLGIYSDAG 179 (393)
Q Consensus 124 ~~G~~~~~IDDGW~~~~rd~~G~-~~~d~~kFP~Gl~~l~d~vh~~Gmk~Glw~~pg 179 (393)
.+|++.+.+.+.=.. ..+. -.|+|.. .-+..+.+.+++.|..+|+.++|-
T Consensus 43 ~lg~~~~~~n~~~d~----~f~~~~~p~p~~--~~l~~~~~~v~~~~ad~g~~~DgD 93 (104)
T PF02879_consen 43 RLGCDVIELNCDPDP----DFPNQHAPNPEE--ESLQRLIKIVRESGADLGIAFDGD 93 (104)
T ss_dssp HTTCEEEEESSS-ST----TGTTTSTSSTST--TTTHHHHHHHHHSTTSEEEEE-TT
T ss_pred HcCCcEEEEeccccc----cccccccccccc--chhHHHHHHhhccCceEEEEECCc
Confidence 346777776532111 1112 3345544 359999999999999999999884
Done!