BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016208
(393 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 238 bits (606), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 133/338 (39%), Positives = 184/338 (54%), Gaps = 14/338 (4%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+L+ GGAGYIGSHA +L+ + V +VDNL G+ A+ +F DL
Sbjct: 4 ILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAIT---------EGAKFYNGDLR 54
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
D + +F + +AVMHFAA + VG S +PL+YY+N L +LE M KV I
Sbjct: 55 DKAFLRDVFTQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFI 114
Query: 172 YSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIG 231
+SST ATYGE D ITE T P N YG+ K E ++ +S+ +N+ I RYFNV G
Sbjct: 115 FSSTAATYGEVDVDLITEETMTNPTNTYGETKLAIEKMLHWYSQASNLRYKIFRYFNVAG 174
Query: 232 SDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDL 291
+ P G +GE PE + A G + + G DYNT DGTC+RDYI V DL
Sbjct: 175 ATPNGIIGEDHRPET----HLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDYIHVEDL 230
Query: 292 VDAHVLALANAKP-GKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEV 350
V AH L L + + G+ YN+G G G SVKE V+A ++ T I E RR GD A +
Sbjct: 231 VAAHFLGLKDLQNGGESDFYNLGNGNGFSVKEIVDAVREVTNHEIPAEVAPRRAGDPARL 290
Query: 351 YSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHINGY 388
+ K +++L W R+ +++ ++ AW W + NGY
Sbjct: 291 VASSQKAKEKLGWDPRYVNVKTIIEHAWNWHQKQPNGY 328
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 233 bits (593), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 143/344 (41%), Positives = 188/344 (54%), Gaps = 17/344 (4%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
VLVTGG+GYIGSH ++LL++ + V I+DNL + V++ L + F+ D+
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGK--HPTFVEGDIR 60
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
+ + +I ++A D V+HFA + VGES +PL YY N + TL ++ AM A VK I
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 172 YSSTCATYGEPDKMPITESTPQ-KPINPYGKAKKMSEDIIIDFSKTT-NMAVMILRYFNV 229
+SST YG+ K+P ES P P +PYGK+K M E I+ D K + ++ +LRYFN
Sbjct: 121 FSSTATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNP 180
Query: 230 IGSDPEGRLGEAPH--PELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYID 287
+G+ P G +GE P P + A G L I G DY T DGT VRDYI
Sbjct: 181 VGAHPSGDMGEDPQGIPN-----NLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 288 VTDLVDAHVLA---LANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRP 344
V DL D HV+A LAN KPG V IYN+G G G SV + V A KA G + + RR
Sbjct: 236 VMDLADGHVVAMEKLAN-KPG-VHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRRE 293
Query: 345 GDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHINGY 388
GD ++D SK ELNW T L Q W WQ H GY
Sbjct: 294 GDLPAYWADASKADRELNWRVTRT-LDEMAQDTWHWQSRHPQGY 336
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 232 bits (592), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 142/344 (41%), Positives = 188/344 (54%), Gaps = 17/344 (4%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
VLVTGG+GYIGSH ++LL++ + V I+DNL + V++ L + F+ D+
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGK--HPTFVEGDIR 60
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
+ + +I ++A D V+HFA + VGES +PL YY N + TL ++ AM A VK I
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 172 YSSTCATYGEPDKMPITESTPQ-KPINPYGKAKKMSEDIIIDFSKTT-NMAVMILRYFNV 229
+SS+ YG+ K+P ES P P +PYGK+K M E I+ D K + ++ +LRYFN
Sbjct: 121 FSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNP 180
Query: 230 IGSDPEGRLGEAPH--PELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYID 287
+G+ P G +GE P P + A G L I G DY T DGT VRDYI
Sbjct: 181 VGAHPSGDMGEDPQGIPN-----NLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 288 VTDLVDAHVLA---LANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRP 344
V DL D HV+A LAN KPG V IYN+G G G SV + V A KA G + + RR
Sbjct: 236 VMDLADGHVVAMEKLAN-KPG-VHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRRE 293
Query: 345 GDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHINGY 388
GD ++D SK ELNW T L Q W WQ H GY
Sbjct: 294 GDLPACWADASKADRELNWRVTRT-LDEMAQDTWHWQSRHPQGY 336
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 232 bits (591), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 142/344 (41%), Positives = 188/344 (54%), Gaps = 17/344 (4%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
VLVTGG+GYIGSH ++LL++ + V I+DNL + V++ L + F+ D+
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGK--HPTFVEGDIR 60
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
+ + +I ++A D V+HFA + VGES +PL YY N + TL ++ AM A VK I
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 172 YSSTCATYGEPDKMPITESTPQ-KPINPYGKAKKMSEDIIIDFSKTT-NMAVMILRYFNV 229
+SS+ YG+ K+P ES P P +PYGK+K M E I+ D K + ++ +LRYFN
Sbjct: 121 FSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNP 180
Query: 230 IGSDPEGRLGEAPH--PELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYID 287
+G+ P G +GE P P + A G L I G DY T DGT VRDYI
Sbjct: 181 VGAHPSGDMGEDPQGIPN-----NLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 288 VTDLVDAHVLA---LANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRP 344
V DL D HV+A LAN KPG V IYN+G G G SV + V A KA G + + RR
Sbjct: 236 VMDLADGHVVAMEKLAN-KPG-VHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRRE 293
Query: 345 GDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHINGY 388
GD ++D SK ELNW T L Q W WQ H GY
Sbjct: 294 GDLPAYWADASKADRELNWRVTRT-LDEMAQDTWHWQSRHPQGY 336
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 232 bits (591), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 142/344 (41%), Positives = 188/344 (54%), Gaps = 17/344 (4%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
VLVTGG+GYIGSH ++LL++ + V I+DNL + V++ L + F+ D+
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGK--HPTFVEGDIR 60
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
+ + +I ++A D V+HFA + VGES +PL YY N + TL ++ AM A VK I
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 172 YSSTCATYGEPDKMPITESTPQ-KPINPYGKAKKMSEDIIIDFSKTT-NMAVMILRYFNV 229
+SS+ YG+ K+P ES P P +PYGK+K M E I+ D K + ++ +LRYFN
Sbjct: 121 FSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNP 180
Query: 230 IGSDPEGRLGEAPH--PELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYID 287
+G+ P G +GE P P + A G L I G DY T DGT VRDYI
Sbjct: 181 VGAHPSGDMGEDPQGIPN-----NLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 288 VTDLVDAHVLA---LANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRP 344
V DL D HV+A LAN KPG V IYN+G G G SV + V A KA G + + RR
Sbjct: 236 VMDLADGHVVAMEKLAN-KPG-VHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRRE 293
Query: 345 GDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHINGY 388
GD ++D SK ELNW T L Q W WQ H GY
Sbjct: 294 GDLPAYWADASKADRELNWRVTRT-LDEMAQDTWHWQSRHPQGY 336
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 231 bits (589), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 142/344 (41%), Positives = 187/344 (54%), Gaps = 17/344 (4%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
VLVTGG+GYIGSH ++LL++ + V I+DNL + V++ L + F+ D+
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGK--HPTFVEGDIR 60
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
+ + +I ++A D V+HFA + VGES +PL YY N + TL ++ AM A VK I
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 172 YSSTCATYGEPDKMPITESTPQ-KPINPYGKAKKMSEDIIIDFSKTT-NMAVMILRYFNV 229
+SS YG+ K+P ES P P +PYGK+K M E I+ D K + ++ +LRYFN
Sbjct: 121 FSSVATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNP 180
Query: 230 IGSDPEGRLGEAPH--PELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYID 287
+G+ P G +GE P P + A G L I G DY T DGT VRDYI
Sbjct: 181 VGAHPSGDMGEDPQGIPN-----NLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 288 VTDLVDAHVLA---LANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRP 344
V DL D HV+A LAN KPG V IYN+G G G SV + V A KA G + + RR
Sbjct: 236 VMDLADGHVVAMEKLAN-KPG-VHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRRE 293
Query: 345 GDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHINGY 388
GD ++D SK ELNW T L Q W WQ H GY
Sbjct: 294 GDLPAYWADASKADRELNWRVTRT-LDEMAQDTWHWQSRHPQGY 336
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 231 bits (589), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 142/344 (41%), Positives = 187/344 (54%), Gaps = 17/344 (4%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
VLVTGG+GYIGSH ++LL++ + V I+DNL + V++ L + F+ D+
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGK--HPTFVEGDIR 60
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
+ + +I ++A D V+HFA + VGES +PL YY N + TL ++ AM A VK I
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 172 YSSTCATYGEPDKMPITESTPQ-KPINPYGKAKKMSEDIIIDFSKTT-NMAVMILRYFNV 229
+SS YG+ K+P ES P P +PYGK+K M E I+ D K + ++ +LRYFN
Sbjct: 121 FSSAATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNP 180
Query: 230 IGSDPEGRLGEAPH--PELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYID 287
+G+ P G +GE P P + A G L I G DY T DGT VRDYI
Sbjct: 181 VGAHPSGDMGEDPQGIPN-----NLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 288 VTDLVDAHVLA---LANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRP 344
V DL D HV+A LAN KPG V IYN+G G G SV + V A KA G + + RR
Sbjct: 236 VMDLADGHVVAMEKLAN-KPG-VHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRRE 293
Query: 345 GDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHINGY 388
GD ++D SK ELNW T L Q W WQ H GY
Sbjct: 294 GDLPAYWADASKADRELNWRVTRT-LDEMAQDTWHWQSRHPQGY 336
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 231 bits (588), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 142/344 (41%), Positives = 187/344 (54%), Gaps = 17/344 (4%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
VLVTGG+GYIGSH ++LL++ + V I+DNL + V++ L + F+ D+
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGK--HPTFVEGDIR 60
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
+ + +I ++A D V+HFA + VGES +PL YY N + TL ++ AM A VK I
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 172 YSSTCATYGEPDKMPITESTPQ-KPINPYGKAKKMSEDIIIDFSKTT-NMAVMILRYFNV 229
+SS YG+ K+P ES P P +PYGK+K M E I+ D K + ++ +LRYFN
Sbjct: 121 FSSAATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNP 180
Query: 230 IGSDPEGRLGEAPH--PELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYID 287
+G+ P G +GE P P + A G L I G DY T DGT VRDYI
Sbjct: 181 VGAHPSGDMGEDPQGIPN-----NLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 288 VTDLVDAHVLA---LANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRP 344
V DL D HV+A LAN KPG V IYN+G G G SV + V A KA G + + RR
Sbjct: 236 VMDLADGHVVAMEKLAN-KPG-VHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRRE 293
Query: 345 GDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHINGY 388
GD ++D SK ELNW T L Q W WQ H GY
Sbjct: 294 GDLPAYWADASKADRELNWRVTRT-LDEMAQDTWHWQSRHPQGY 336
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 231 bits (588), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 141/344 (40%), Positives = 188/344 (54%), Gaps = 17/344 (4%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
VLVTGG+GYIGSH ++LL++ + V I+DNL + V++ L + F+ D+
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGK--HPTFVEGDIR 60
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
+ + +I ++A D V+HFA + VGES +PL YY N + TL ++ AM A VK I
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 172 YSSTCATYGEPDKMPITESTPQ-KPINPYGKAKKMSEDIIIDFSKTT-NMAVMILRYFNV 229
+SS+ YG+ K+P ES P P +P+GK+K M E I+ D K + ++ +LRYFN
Sbjct: 121 FSSSATVYGDQPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIALLRYFNP 180
Query: 230 IGSDPEGRLGEAPH--PELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYID 287
+G+ P G +GE P P + A G L I G DY T DGT VRDYI
Sbjct: 181 VGAHPSGDMGEDPQGIPN-----NLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 288 VTDLVDAHVLA---LANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRP 344
V DL D HV+A LAN KPG V IYN+G G G SV + V A KA G + + RR
Sbjct: 236 VMDLADGHVVAMEKLAN-KPG-VHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRRE 293
Query: 345 GDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHINGY 388
GD ++D SK ELNW T L Q W WQ H GY
Sbjct: 294 GDLPAYWADASKADRELNWRVTRT-LDEMAQDTWHWQSRHPQGY 336
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Glucose
Length = 338
Score = 230 bits (586), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 141/344 (40%), Positives = 187/344 (54%), Gaps = 17/344 (4%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
VLVTGG+GYIGSH ++LL++ + V I+DNL + V++ L + F+ D+
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGK--HPTFVEGDIR 60
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
+ + +I ++A D V+HFA + VGES +PL YY N + TL ++ AM A VK I
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 172 YSSTCATYGEPDKMPITESTPQ-KPINPYGKAKKMSEDIIIDFSKTT-NMAVMILRYFNV 229
+SS YG+ K+P ES P P +P+GK+K M E I+ D K + ++ +LRYFN
Sbjct: 121 FSSAATVYGDQPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIALLRYFNP 180
Query: 230 IGSDPEGRLGEAPH--PELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYID 287
+G+ P G +GE P P + A G L I G DY T DGT VRDYI
Sbjct: 181 VGAHPSGDMGEDPQGIPN-----NLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 288 VTDLVDAHVLA---LANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRP 344
V DL D HV+A LAN KPG V IYN+G G G SV + V A KA G + + RR
Sbjct: 236 VMDLADGHVVAMEKLAN-KPG-VHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRRE 293
Query: 345 GDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHINGY 388
GD ++D SK ELNW T L Q W WQ H GY
Sbjct: 294 GDLPAYWADASKADRELNWRVTRT-LDEMAQDTWHWQSRHPQGY 336
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
UDP- Galactose
Length = 338
Score = 229 bits (585), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 141/344 (40%), Positives = 187/344 (54%), Gaps = 17/344 (4%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
VLVTGG+GYIGSH ++LL++ + V I+DNL + V++ L + F+ D+
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGK--HPTFVEGDIR 60
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
+ + +I ++A D V+HFA + VGES +PL YY N + TL ++ AM A VK I
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFI 120
Query: 172 YSSTCATYGEPDKMPITESTPQ-KPINPYGKAKKMSEDIIIDFSKTT-NMAVMILRYFNV 229
+SS YG+ K+P ES P P +P+GK+K M E I+ D K + ++ +LRYFN
Sbjct: 121 FSSAATVYGDNPKIPYVESFPTGTPQSPFGKSKLMVEQILTDLQKAQPDWSIALLRYFNP 180
Query: 230 IGSDPEGRLGEAPH--PELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYID 287
+G+ P G +GE P P + A G L I G DY T DGT VRDYI
Sbjct: 181 VGAHPSGDMGEDPQGIPN-----NLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIH 235
Query: 288 VTDLVDAHVLA---LANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRP 344
V DL D HV+A LAN KPG V IYN+G G G SV + V A KA G + + RR
Sbjct: 236 VMDLADGHVVAMEKLAN-KPG-VHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRRE 293
Query: 345 GDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHINGY 388
GD ++D SK ELNW T L Q W WQ H GY
Sbjct: 294 GDLPAYWADASKADRELNWRVTRT-LDEMAQDTWHWQSRHPQGY 336
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 229 bits (584), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 142/354 (40%), Positives = 200/354 (56%), Gaps = 25/354 (7%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMG------AVKVLQELFPQPGQLQF 105
VLVTGGAGYIGSH L LL+ Y ++DN G +++ +QEL + ++F
Sbjct: 5 VLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGR--SVEF 62
Query: 106 IYADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAH 165
D+ D A+ ++F + +F AV+HFA + VGES +PL YY + T+ +LE M AH
Sbjct: 63 EEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH 122
Query: 166 KVKTLIYSSTCATYGEPDKMPITESTPQKPI-NPYGKAKKMSEDIIIDFS---KTTNMAV 221
VK L++SS+ YG P +P+ E+ P NPYGK+K E++I D KT N V
Sbjct: 123 GVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWN--V 180
Query: 222 MILRYFNVIGSDPEGRLGEAPH--PELREHGRISGACFDAARGIIPGLKIRGTDYNTADG 279
++LRYFN G+ G +GE P P + A G L + G DY+T DG
Sbjct: 181 VLLRYFNPTGAHASGCIGEDPQGIPN-----NLMPYVSQVAIGRREALNVFGNDYDTEDG 235
Query: 280 TCVRDYIDVTDLVDAHVLALANAKPGKVG--IYNVGTGKGRSVKEFVEACKKATGVNIKV 337
T VRDYI V DL H+ AL K + G IYN+GTG G SV + V+A +KA+G I
Sbjct: 236 TGVRDYIHVVDLAKGHIAALRKLKE-QCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPY 294
Query: 338 EYLSRRPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHINGYGSR 391
+ ++RR GD A Y++PS ++EL WTA L + WRWQK + +G+G++
Sbjct: 295 KVVARREGDVAACYANPSLAQEELGWTAAL-GLDRMCEDLWRWQKQNPSGFGTQ 347
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 228 bits (581), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 141/354 (39%), Positives = 200/354 (56%), Gaps = 25/354 (7%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMG------AVKVLQELFPQPGQLQF 105
VLVTGGAGYIGSH L LL+ Y ++DN G +++ +QEL + ++F
Sbjct: 5 VLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGR--SVEF 62
Query: 106 IYADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAH 165
D+ D A+ ++F + +F AV+HFA + +GES +PL YY + T+ +LE M AH
Sbjct: 63 EEMDILDQGALQRLFKKYSFMAVIHFAGLKAMGESVQKPLDYYRVNLTGTIQLLEIMKAH 122
Query: 166 KVKTLIYSSTCATYGEPDKMPITESTPQKPI-NPYGKAKKMSEDIIIDFS---KTTNMAV 221
VK L++SS+ YG P +P+ E+ P NPYGK+K E++I D KT N V
Sbjct: 123 GVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWN--V 180
Query: 222 MILRYFNVIGSDPEGRLGEAPH--PELREHGRISGACFDAARGIIPGLKIRGTDYNTADG 279
++LRYFN G+ G +GE P P + A G L + G DY+T DG
Sbjct: 181 VLLRYFNPTGAHASGCIGEDPQGIPN-----NLMPYVSQVAIGRREALNVFGNDYDTEDG 235
Query: 280 TCVRDYIDVTDLVDAHVLALANAKPGKVG--IYNVGTGKGRSVKEFVEACKKATGVNIKV 337
T VRDYI V DL H+ AL K + G IYN+GTG G SV + V+A +KA+G I
Sbjct: 236 TGVRDYIHVVDLAKGHIAALRKLKE-QCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPY 294
Query: 338 EYLSRRPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHINGYGSR 391
+ ++RR GD A Y++PS ++EL WTA L + WRWQK + +G+G++
Sbjct: 295 KVVARREGDVAACYANPSLAQEELGWTAAL-GLDRMCEDLWRWQKQNPSGFGTQ 347
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 228 bits (580), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 141/354 (39%), Positives = 199/354 (56%), Gaps = 25/354 (7%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMG------AVKVLQELFPQPGQLQF 105
VLVTGGAGYIGSH L LL+ Y ++DN G +++ +QEL + ++F
Sbjct: 5 VLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGR--SVEF 62
Query: 106 IYADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAH 165
D+ D A+ ++F + +F AV+HFA + VGES +PL YY + T+ +LE M AH
Sbjct: 63 EEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH 122
Query: 166 KVKTLIYSSTCATYGEPDKMPITESTPQKPI-NPYGKAKKMSEDIIIDFS---KTTNMAV 221
VK L++SS+ YG P +P+ E+ P NPYGK+K E++I D KT N
Sbjct: 123 GVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWN--A 180
Query: 222 MILRYFNVIGSDPEGRLGEAPH--PELREHGRISGACFDAARGIIPGLKIRGTDYNTADG 279
++LRYFN G+ G +GE P P + A G L + G DY+T DG
Sbjct: 181 VLLRYFNPTGAHASGCIGEDPQGIPN-----NLMPYVSQVAIGRREALNVFGNDYDTEDG 235
Query: 280 TCVRDYIDVTDLVDAHVLALANAKPGKVG--IYNVGTGKGRSVKEFVEACKKATGVNIKV 337
T VRDYI V DL H+ AL K + G IYN+GTG G SV + V+A +KA+G I
Sbjct: 236 TGVRDYIHVVDLAKGHIAALRKLKE-QCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPY 294
Query: 338 EYLSRRPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHINGYGSR 391
+ ++RR GD A Y++PS ++EL WTA L + WRWQK + +G+G++
Sbjct: 295 KVVARREGDVAACYANPSLAQEELGWTAAL-GLDRMCEDLWRWQKQNPSGFGTQ 347
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 223 bits (568), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 133/351 (37%), Positives = 183/351 (52%), Gaps = 17/351 (4%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
VLVTGGAGYIGSH + L+++ Y + DNLS +V L+ L + F DL
Sbjct: 14 VLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKH--HIPFYEVDLC 71
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
D K + K+F E D+V+HFA + VGEST PLRYYHN T+V+LE M + V +
Sbjct: 72 DRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFV 131
Query: 172 YSSTCATYGE----PDKMPITESTPQKPINPYGKAKKMSEDIIIDF--SKTTNMAVMILR 225
+SS+ YG+ P+ +PI E P P NPYG K E+I+ D S + ILR
Sbjct: 132 FSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSDKKSWKFAILR 191
Query: 226 YFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDY 285
YFN IG+ P G +GE P L + A G L I G DY++ DGT +RDY
Sbjct: 192 YFNPIGAHPSGLIGEDP---LGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRDY 248
Query: 286 IDVTDLVDAHVLALA-----NAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYL 340
I V DL H+ AL N G +N+G+GKG +V E A KA+G+++ +
Sbjct: 249 IHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVT 308
Query: 341 SRRPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHINGYGSR 391
RR GD + + P + + EL W ++ S + W+W + GY R
Sbjct: 309 GRRAGDVLNLTAKPDRAKRELKWQTEL-QVEDSCKDLWKWTTENPFGYQLR 358
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 215 bits (547), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 129/341 (37%), Positives = 187/341 (54%), Gaps = 12/341 (3%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+LVTGGAGYIGSH A+ LL Y V I DNL A+ ++++ + F D+
Sbjct: 8 ILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGK--TPAFHETDVS 65
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
D +A+ +IF + A +HFAA+ VGES +P+ YY N + L +L M VK ++
Sbjct: 66 DERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIV 125
Query: 172 YSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDF-SKTTNMAVMILRYFNVI 230
+SS+ YG P++ PI E+ P NPYG+ K M+E I+ D + + V LRYFN +
Sbjct: 126 FSSSATVYGVPERSPIDETFPLSATNPYGQTKLMAEQILRDVEAADPSWRVATLRYFNPV 185
Query: 231 GSDPEGRLGEAPH--PELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDV 288
G+ G +GE P P + A G + L++ G+DY T DGT VRDYI V
Sbjct: 186 GAHESGLIGEDPAGIP-----NNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTGVRDYIHV 240
Query: 289 TDLVDAHVLALANAKPGKVGI-YNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDY 347
DL H+ AL + + N+GTG+G SV E V A +KA+G + E ++RRPGD
Sbjct: 241 VDLARGHIAALDALERRDASLTVNLGTGRGYSVLEVVRAFEKASGRAVPYELVARRPGDV 300
Query: 348 AEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHINGY 388
AE Y++P+ + + W A DL+ WRWQ+ + G+
Sbjct: 301 AECYANPAAAAETIGWKAE-RDLERMCADHWRWQENNPRGF 340
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 211 bits (536), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 138/386 (35%), Positives = 204/386 (52%), Gaps = 47/386 (12%)
Query: 52 VLVTGGAGYIGSHAALRLLKDS-YRVTIVDNL-----------SRGNMGAVKVLQELFPQ 99
VLV GGAGYIGSH LL+D+ + V IVD+L +R N+ A K+ Q P+
Sbjct: 5 VLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENV-ARKLQQSDGPK 63
Query: 100 PGQL-QFIYADLGDAKA---VNKIFAENA-FDAVMHFAAVAYVGESTLEPLRYYHNITSN 154
P ++ ++GD + +N +F + DAV+H A VGES +PL+YY N
Sbjct: 64 PPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVG 123
Query: 155 TLVILEAMAAHKVKTLIYSSTCATYGEP-------DKMPITESTPQKPINPYGKAKKMSE 207
L +L+AM HK +I+SS+ A +G P + PI + + P +PYG++K ++E
Sbjct: 124 ILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKLIAE 183
Query: 208 DIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREH------GRISGACFDAAR 261
+I D ++ + + LRYFN G+ +G +GE H + H GR+ R
Sbjct: 184 RMIRDCAEAYGIKGICLRYFNACGAHEDGDIGE--HYQGSTHLIPIILGRVMSDIAPDQR 241
Query: 262 GII-------PGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLAL-------ANAKPGKV 307
I + I GTDY T DGTCVRDY+ V DL AH+LAL N K
Sbjct: 242 LTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYF 301
Query: 308 GIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDELNWTARF 367
++N+GT +G SV+E +E +K TG I V RR GD A + + K R+ L W ++
Sbjct: 302 SVFNLGTSRGYSVREVIEVARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPKY 361
Query: 368 TDLQGSLQIAWRWQKTHINGYGSRNN 393
L+ ++ +W++Q+TH NGY S+ N
Sbjct: 362 DTLEAIMETSWKFQRTHPNGYASQEN 387
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 105/311 (33%), Positives = 148/311 (47%), Gaps = 33/311 (10%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
VLVTGGAG+IGSH LL V ++DNL+ G V P + F DL
Sbjct: 3 VLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENV---------PKGVPFFRVDLR 53
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
D + V + F E V H AA A V S +P+ + L +LEA + V+ L+
Sbjct: 54 DKEGVERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLV 113
Query: 172 YSST-CATYGE-PDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNV 229
++ST A YGE P+ E+ P +P +PY +K E + + ++ + + LRY NV
Sbjct: 114 FASTGGAIYGEVPEGERAEETWPPRPKSPYAASKAAFEHYLSVYGQSYGLKWVSLRYGNV 173
Query: 230 IG--SDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNT-ADGTCVRDYI 286
G DP G G A F A ++ GL + T D CVRDY+
Sbjct: 174 YGPRQDPHGEAGVV-------------AIF--AERVLKGLPVTLYARKTPGDEGCVRDYV 218
Query: 287 DVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGD 346
V D+ +AH LAL + + GIYNVGTG+G + +E + A +A G +V+ RPGD
Sbjct: 219 YVGDVAEAHALALFSLE----GIYNVGTGEGHTTREVLMAVAEAAGKAPEVQPAPPRPGD 274
Query: 347 YAEVYSDPSKI 357
P K+
Sbjct: 275 LERSVLSPLKL 285
>pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZK|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZL|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZL|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
Length = 330
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 88/334 (26%), Positives = 143/334 (42%), Gaps = 51/334 (15%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+L+TGGAG +GS+ L + + ++DN + G +E+ P L I +
Sbjct: 23 ILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGK-------REVLPPVAGLSVIEGSVT 75
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSN---TLVILEAMAAHKVK 168
DA + + F V+H AA AY +P + + +N ++ + +A + VK
Sbjct: 76 DAGLLERAFDSFKPTHVVHSAA-AY-----KDPDDWAEDAATNVQGSINVAKAASKAGVK 129
Query: 169 TLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFN 228
L+ T YG P +PI +P P YG +K E ++ +++ V+ LR N
Sbjct: 130 RLLNFQTALCYGRPATVPIPIDSPTAPFTSYGISKTAGEAFLM----MSDVPVVSLRLAN 185
Query: 229 VIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDV 288
V G RL P P + + CF + VRD++D+
Sbjct: 186 VTGP----RLAIGPIPTFYKRLKAGQKCFCS--------------------DTVRDFLDM 221
Query: 289 TDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPG--D 346
+D + L+L +P G++NV TG+G S+KE + G + PG D
Sbjct: 222 SDFLAIADLSLQEGRP--TGVFNVSTGEGHSIKEVFDVVLDYVGATLAEPVPVVAPGADD 279
Query: 347 YAEVYSDPSKIRDELNWTARFTDLQGSL--QIAW 378
V DPSK E W A+ D + ++ Q+AW
Sbjct: 280 VPSVVLDPSKTETEFGWKAK-VDFKDTITGQLAW 312
>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-N-Acetylgalactosamine
pdb|1SB9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-Glucose
Length = 352
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 94/341 (27%), Positives = 148/341 (43%), Gaps = 38/341 (11%)
Query: 53 LVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFP--QPGQLQFIYADL 110
L+TG AG+IGS+ LLK +V +DN + G+ + ++ L Q +FI D+
Sbjct: 31 LITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDI 90
Query: 111 GDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTL 170
+ N A D V+H AA+ V S +P+ L +L A KV++
Sbjct: 91 RNLDDCNNACA--GVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSF 148
Query: 171 IYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVI 230
Y+++ +TYG+ +P E T KP++PY K ++E FS+ + + LRYFNV
Sbjct: 149 TYAASSSTYGDHPGLPKVEDTIGKPLSPYAVTKYVNELYADVFSRCYGFSTIGLRYFNVF 208
Query: 231 G--SDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLK---IRGTD-YNTADGTCVRD 284
G DP G A +IP I+G D Y DG RD
Sbjct: 209 GRRQDPNG----------------------AYAAVIPKWTSSMIQGDDVYINGDGETSRD 246
Query: 285 YIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKA---TGVNIKVE--Y 339
+ + + V A++LA + +YN+ G S+ + A + GV+ E Y
Sbjct: 247 FCYIENTVQANLLAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVY 306
Query: 340 LSRRPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRW 380
R GD +D SK L + ++ D+ + +A W
Sbjct: 307 RDFREGDVRHSLADISKAAKLLGYAPKY-DVSAGVALAMPW 346
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
Length = 346
Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 93/335 (27%), Positives = 155/335 (46%), Gaps = 32/335 (9%)
Query: 51 HVLVTGGAGYIGSHAALRLLK--DSYRVTIVDNLS-RGNMGAVKVLQELFPQPGQLQFIY 107
++LVTGGAG+IGS+ L+ ++Y++ D L+ GN+ VK +Q+ P F+
Sbjct: 26 NILVTGGAGFIGSNFVHYXLQSYETYKIINFDALTYSGNLNNVKSIQD---HP-NYYFVK 81
Query: 108 ADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKV 167
++ + + + + E +++FAA ++V S P+ +Y T+ +LE + +
Sbjct: 82 GEIQNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPH 141
Query: 168 KTLIYSSTCATYGEPDKM-PITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRY 226
L+ ST YG K TE TP P +PY +K ++ I + + KT + V++ R
Sbjct: 142 IKLVQVSTDEVYGSLGKTGRFTEETPLAPNSPYSSSKASADXIALAYYKTYQLPVIVTRC 201
Query: 227 FNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYI 286
N G +PE I +A G L + G DG VRD++
Sbjct: 202 SN--------NYGPYQYPE----KLIPLXVTNALEG--KKLPLYG------DGLNVRDWL 241
Query: 287 DVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIK-VEYLSRRPG 345
VTD A + L + G+V YN+G ++ E VE G K +EY++ R G
Sbjct: 242 HVTDHCSAIDVVLHKGRVGEV--YNIGGNNEKTNVEVVEQIITLLGKTKKDIEYVTDRLG 299
Query: 346 DYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRW 380
+ K ++E +W ++T QG LQ +W
Sbjct: 300 HDRRYAINAEKXKNEFDWEPKYTFEQG-LQETVQW 333
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 117/249 (46%), Gaps = 35/249 (14%)
Query: 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110
++VTGGAG+IGSH +L++ Y V +VDNLS G V EL + DL
Sbjct: 2 RIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFVNPSAELHVR---------DL 52
Query: 111 GDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTL 170
D I D V HFAA V ST EP+ +++ T +LE V+T+
Sbjct: 53 KDYSWGAGIKG----DVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTV 108
Query: 171 IYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVI 230
+++S+ YG+ D +P E P KPI+ YG AK E + +++ + + +RY NV+
Sbjct: 109 VFASSSTVYGDADVIPTPEEEPYKPISVYGAAKAAGEVMCATYARLFGVRCLAVRYANVV 168
Query: 231 GSDPEGRLGEAPHPELREHGRISGACFDAARGIIPG-LKIRGTDYNTADGTCVRDYIDVT 289
G P LR HG I R P L++ G DGT + Y+ V
Sbjct: 169 G------------PRLR-HGVIYDFIMKLRRN--PNVLEVLG------DGTQRKSYLYVR 207
Query: 290 DLVDAHVLA 298
D V+A + A
Sbjct: 208 DAVEATLAA 216
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 86/291 (29%), Positives = 131/291 (45%), Gaps = 35/291 (12%)
Query: 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYA 108
++ ++VTGGAG+IGSH +L +S + ++DNLS GN +E + +L + A
Sbjct: 1 MSLIVVTGGAGFIGSHVVDKL-SESNEIVVIDNLSSGN-------EEFVNEAARL--VKA 50
Query: 109 DLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK 168
DL A K + + A + V H AA V P Y N T +LEAM V
Sbjct: 51 DL--AADDIKDYLKGA-EEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVS 107
Query: 169 TLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFN 228
++++ST YGE +P E P PI+ YG +K E +I + T +M I R+ N
Sbjct: 108 RIVFTSTSTVYGEAKVIPTPEDYPTHPISLYGASKLACEALIESYCHTFDMQAWIYRFAN 167
Query: 229 VIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDV 288
VIG HG I R L+I G +G + YI +
Sbjct: 168 VIGRRS-------------THGVIYDFIMKLKRN-PEELEILG------NGEQNKSYIYI 207
Query: 289 TDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEY 339
+D VDA + L + +V I+N+G+ VK E + G++ + +
Sbjct: 208 SDCVDAMLFGLRGDE--RVNIFNIGSEDQIKVKRIAEIVCEELGLSPRFRF 256
>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|B Chain B, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|C Chain C, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|D Chain D, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
Length = 364
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 90/349 (25%), Positives = 149/349 (42%), Gaps = 40/349 (11%)
Query: 53 LVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRG---NMGAVKVLQELFPQPGQLQFIYAD 109
L+TG AG+IGS+ +LLK + V +DN S G N+ VK L Q + FI D
Sbjct: 42 LITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVST-EQWSRFCFIEGD 100
Query: 110 LGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKT 169
+ D ++ D V+H AA+ V S ++P+ + L IL A +V++
Sbjct: 101 IRDLTTCEQVM--KGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQS 158
Query: 170 LIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNV 229
Y+++ +TYG+ +P E P++PY K ++E +++T + LRYFNV
Sbjct: 159 FTYAASSSTYGDHPALPKVEENIGNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRYFNV 218
Query: 230 IG--SDPEGRLGEAPHPELREHGRISGACFDAARGIIP---GLKIRGTD-YNTADGTCVR 283
G DP G A +IP ++G D Y DG R
Sbjct: 219 FGRRQDPNG----------------------AYAAVIPKWTAAMLKGDDVYINGDGETSR 256
Query: 284 DYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGV-----NIKVE 338
D+ + +++ ++L+ K IYNV G ++ E + + ++
Sbjct: 257 DFCYIDNVIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIK 316
Query: 339 YLSRRPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHING 387
Y R GD +D +K D L + +G L+++ W + G
Sbjct: 317 YREFRSGDVRHSQADVTKAIDLLKYRPNIKIREG-LRLSMPWYVRFLKG 364
>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUD|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
Length = 351
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 90/349 (25%), Positives = 149/349 (42%), Gaps = 40/349 (11%)
Query: 53 LVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRG---NMGAVKVLQELFPQPGQLQFIYAD 109
L+TG AG+IGS+ +LLK + V +DN S G N+ VK L Q + FI D
Sbjct: 29 LITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVST-EQWSRFCFIEGD 87
Query: 110 LGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKT 169
+ D ++ D V+H AA+ V S ++P+ + L IL A +V++
Sbjct: 88 IRDLTTCEQVM--KGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQS 145
Query: 170 LIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNV 229
Y+++ +TYG+ +P E P++PY K ++E +++T + LRYFNV
Sbjct: 146 FTYAASSSTYGDHPALPKVEENIGNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRYFNV 205
Query: 230 IG--SDPEGRLGEAPHPELREHGRISGACFDAARGIIP---GLKIRGTD-YNTADGTCVR 283
G DP G A +IP ++G D Y DG R
Sbjct: 206 FGRRQDPNG----------------------AYAAVIPKWTAAMLKGDDVYINGDGETSR 243
Query: 284 DYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGV-----NIKVE 338
D+ + +++ ++L+ K IYNV G ++ E + + ++
Sbjct: 244 DFCYIDNVIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIK 303
Query: 339 YLSRRPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHING 387
Y R GD +D +K D L + +G L+++ W + G
Sbjct: 304 YREFRSGDVRHSQADVTKAIDLLKYRPNIKIREG-LRLSMPWYVRFLKG 351
>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 90/349 (25%), Positives = 149/349 (42%), Gaps = 40/349 (11%)
Query: 53 LVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRG---NMGAVKVLQELFPQPGQLQFIYAD 109
L+TG AG+IGS+ +LLK + V +DN S G N+ VK L Q + FI D
Sbjct: 23 LITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVST-EQWSRFCFIEGD 81
Query: 110 LGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKT 169
+ D ++ D V+H AA+ V S ++P+ + L IL A +V++
Sbjct: 82 IRDLTTCEQVM--KGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQS 139
Query: 170 LIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNV 229
Y+++ +TYG+ +P E P++PY K ++E +++T + LRYFNV
Sbjct: 140 FTYAASSSTYGDHPALPKVEENIGNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRYFNV 199
Query: 230 IG--SDPEGRLGEAPHPELREHGRISGACFDAARGIIP---GLKIRGTD-YNTADGTCVR 283
G DP G A +IP ++G D Y DG R
Sbjct: 200 FGRRQDPNG----------------------AYAAVIPKWTAAMLKGDDVYINGDGETSR 237
Query: 284 DYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGV-----NIKVE 338
D+ + +++ ++L+ K IYNV G ++ E + + ++
Sbjct: 238 DFCYIDNVIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIK 297
Query: 339 YLSRRPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHING 387
Y R GD +D +K D L + +G L+++ W + G
Sbjct: 298 YREFRSGDVRHSQADVTKAIDLLKYRPNIKIREG-LRLSMPWYVRFLKG 345
>pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 90/349 (25%), Positives = 149/349 (42%), Gaps = 40/349 (11%)
Query: 53 LVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRG---NMGAVKVLQELFPQPGQLQFIYAD 109
L+TG AG+IGS+ +LLK + V +DN S G N+ VK L Q + FI D
Sbjct: 29 LITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVST-EQWSRFCFIEGD 87
Query: 110 LGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKT 169
+ D ++ D V+H AA+ V S ++P+ + L IL A +V++
Sbjct: 88 IRDLTTCEQVM--KGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQS 145
Query: 170 LIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNV 229
Y+++ +TYG+ +P E P++PY K ++E +++T + LRYFNV
Sbjct: 146 FTYAASSSTYGDHPALPKVEENIGNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRYFNV 205
Query: 230 IG--SDPEGRLGEAPHPELREHGRISGACFDAARGIIP---GLKIRGTD-YNTADGTCVR 283
G DP G A +IP ++G D Y DG R
Sbjct: 206 FGRRQDPNG----------------------AYAAVIPKWTAAMLKGDDVYINGDGETSR 243
Query: 284 DYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGV-----NIKVE 338
D+ + +++ ++L+ K IYNV G ++ E + + ++
Sbjct: 244 DFCYIDNVIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIK 303
Query: 339 YLSRRPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHING 387
Y R GD +D +K D L + +G L+++ W + G
Sbjct: 304 YREFRSGDVRASQADVTKAIDLLKYRPNIKIREG-LRLSMPWYVRFLKG 351
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 114/249 (45%), Gaps = 39/249 (15%)
Query: 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110
++VTGGAG+IGSH +L++ Y V +VD + R G+ + DL
Sbjct: 2 RIVVTGGAGFIGSHLVDKLVELGYEVVVVDIVQRDTGGSA-------------ELHVRDL 48
Query: 111 GDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTL 170
D I D V HFAA V ST EP+ +++ T +LE V+T+
Sbjct: 49 KDYSWGAGIKG----DVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTV 104
Query: 171 IYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVI 230
+++S+ YG+ D +P E P KPI+ YG AK E + +++ + + +RY NV+
Sbjct: 105 VFASSSTVYGDADVIPTPEEEPYKPISVYGAAKAAGEVMCATYARLFGVRCLAVRYANVV 164
Query: 231 GSDPEGRLGEAPHPELREHGRISGACFDAARGIIPG-LKIRGTDYNTADGTCVRDYIDVT 289
G P LR HG I R P L++ G DGT + Y+ V
Sbjct: 165 G------------PRLR-HGVIYDFIMKLRRN--PNVLEVLG------DGTQRKSYLYVR 203
Query: 290 DLVDAHVLA 298
D V+A + A
Sbjct: 204 DAVEATLAA 212
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 91.3 bits (225), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 92/349 (26%), Positives = 156/349 (44%), Gaps = 36/349 (10%)
Query: 50 THVLVTGGAGYIGSHAALRLLKDSY-RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYA 108
T+V+V GGAG++GS+ RLL+ +V +VDNL + A K+ P ++F
Sbjct: 33 TNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNL----LSAEKIN---VPDHPAVRFSET 85
Query: 109 DLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHK-V 167
+ D + + ++ +D V H A S +PL + N T TL + E + K +
Sbjct: 86 SITDDALLASL--QDEYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRL 143
Query: 168 KTLIYSSTCATYGEP--DKMPITESTPQKPIN----PYGKAKKMSEDIIIDFSKTTNMAV 221
K ++YS+ + E D TE T ++ PY +K E + + K +
Sbjct: 144 KKVVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYSMSKIFGEFYSVYYHKQHQLPT 203
Query: 222 MILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGL---KIRGTDYNTAD 278
+ R+ NV G P LG GR G R + P ++G +
Sbjct: 204 VRARFQNVYG--PGEILGA---------GRWRGTPATVWRNVTPTFIYKALKGMPLPLEN 252
Query: 279 G-TCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKV 337
G RD+I V D+ + + A+ PG G+YN+ +GK S+ + + TG N ++
Sbjct: 253 GGVATRDFIFVEDVANGLIACAADGTPG--GVYNIASGKETSIADLATKINEITGNNTEL 310
Query: 338 EYLSRRPGDYA-EVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHI 385
+ L +RP D + + + P K R EL ++A + + L+ W K ++
Sbjct: 311 DRLPKRPWDNSGKRFGSPEKARRELGFSADVS-IDDGLRKTIEWTKANL 358
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 86/336 (25%), Positives = 146/336 (43%), Gaps = 41/336 (12%)
Query: 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110
+L+TGGAG+IG H A L+ VT++D+L M + + +P L+ DL
Sbjct: 9 RILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKP-VLELEERDL 67
Query: 111 GDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTL 170
D + V H A+ V S +PL Y N+ S +L + V +
Sbjct: 68 SDVR------------LVYHLASHKSVPRSFKQPLDYLDNVDSGRH-LLALCTSVGVPKV 114
Query: 171 IYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMA--VMILRYFN 228
+ STC YG+ D +P E +P P +PY A K+ +++ + ++A V I+R+FN
Sbjct: 115 VVGSTCEVYGQADTLPTPEDSPLSPRSPYA-ASKVGLEMVAGAHQRASVAPEVGIVRFFN 173
Query: 229 VIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDV 288
V G P R + C + L R DG RD+ +
Sbjct: 174 VYG------------PGERPDALVPRLCAN--------LLTRNELPVEGDGEQRRDFTYI 213
Query: 289 TDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYA 348
TD+VD ++ALAN +P + N G+G+ SV + + +AT +V RP +
Sbjct: 214 TDVVD-KLVALAN-RPLP-SVVNFGSGQSLSVNDVIRIL-QATSPAAEVARKQPRPNEIT 269
Query: 349 EVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTH 384
E +D + ++ + ++ +++ W ++
Sbjct: 270 EFRADTALQTRQIGERSGGIGIEEGIRLTLEWWQSR 305
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 91/346 (26%), Positives = 144/346 (41%), Gaps = 51/346 (14%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSY------RVTIVDNLS----RGNMGAVKVLQELFPQPG 101
+LVTGGAG+IGSH +LL +Y V ++D+L+ R N+ V P
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDA------DP- 55
Query: 102 QLQFIYADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEA 161
+L+F++ D+ DA + + DA++HFAA ++V S + T +L+
Sbjct: 56 RLRFVHGDIRDAGLLAREL--RGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQC 113
Query: 162 MAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAV 221
V +++ ST YG D TES+P +P +PY +K S+ + + +T + V
Sbjct: 114 AVDAGVGRVVHVSTNQVYGSIDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTYGLDV 173
Query: 222 MILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNT----A 277
I R N G HPE +IP D T
Sbjct: 174 RITRCCN--------NYGPYQHPE----------------KLIPLFVTNLLDGGTLPLYG 209
Query: 278 DGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNI-K 336
DG VR+++ D L LA + G+ IY++G G + +E + G +
Sbjct: 210 DGANVREWVHTDDHCRGIALVLAGGRAGE--IYHIGGGLELTNRELTGILLDSLGADWSS 267
Query: 337 VEYLSRRPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQK 382
V ++ R G D KI EL + + + G L RW +
Sbjct: 268 VRKVADRKGHDLRYSLDGGKIERELGYRPQVSFADG-LARTVRWYR 312
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 91/346 (26%), Positives = 144/346 (41%), Gaps = 51/346 (14%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSY------RVTIVDNLS----RGNMGAVKVLQELFPQPG 101
+LVTGGAG+IGSH +LL +Y V ++D+L+ R N+ V P
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDA------DP- 55
Query: 102 QLQFIYADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEA 161
+L+F++ D+ DA + + DA++HFAA ++V S + T +L+
Sbjct: 56 RLRFVHGDIRDAGLLAREL--RGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQC 113
Query: 162 MAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAV 221
V +++ ST YG D TES+P +P +PY +K S+ + + +T + V
Sbjct: 114 AVDAGVGRVVHVSTDEVYGSIDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTYGLDV 173
Query: 222 MILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNT----A 277
I R N G HPE +IP D T
Sbjct: 174 RITRCCN--------NYGPYQHPE----------------KLIPLFVTNLLDGGTLPLYG 209
Query: 278 DGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNI-K 336
DG VR+++ D L LA + G+ IY++G G + +E + G +
Sbjct: 210 DGANVREWVHTDDHCRGIALVLAGGRAGE--IYHIGGGLELTNRELTGILLDSLGADWSS 267
Query: 337 VEYLSRRPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQK 382
V ++ R G D KI EL + + + G L RW +
Sbjct: 268 VRKVADRKGHDLRYSLDGGKIERELGYRPQVSFADG-LARTVRWYR 312
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 91/341 (26%), Positives = 152/341 (44%), Gaps = 38/341 (11%)
Query: 52 VLVTGGAGYIGSHAALRLLKD--SYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYAD 109
+LVTGG G+IGS+ +L+ + V +D L G+ A L++L P + F+ D
Sbjct: 6 LLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPAN--LKDLEDDP-RYTFVKGD 62
Query: 110 LGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKT 169
+ D + V ++ + D V+H AA ++V S P + H+ T +LE++ +
Sbjct: 63 VADYELVKELVRK--VDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEV 120
Query: 170 -LIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFN 228
++ ST YG+ K TE+ P +PY K S+ +++ +++T N+ I R N
Sbjct: 121 RFVHVSTDEVYGDILKGSFTENDRLMPSSPYSATKAASDMLVLGWTRTYNLNASITRCTN 180
Query: 229 VIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDV 288
G PE I A+ G+ + I GT G VRD++ V
Sbjct: 181 --------NYGPYQFPE----KLIPKTIIRASLGL--KIPIYGT------GKNVRDWLYV 220
Query: 289 TDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIK-VEYLSRRPGDY 347
D V A L L + + IYN+ G+ ++ E V+ + G + +E + RPG
Sbjct: 221 EDHVRAIELVLLKGESRE--IYNISAGEEKTNLEVVKIILRLMGKGEELIELVEDRPGHD 278
Query: 348 AEVYSDPSKIRDELNWTARFTDLQG-------SLQIAWRWQ 381
D KI +L W ++T +G L+ W W+
Sbjct: 279 LRYSLDSWKITRDLKWRPKYTFDEGIKKTIDWYLKNEWWWK 319
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 80/319 (25%), Positives = 137/319 (42%), Gaps = 42/319 (13%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVK--VLQELFPQPGQLQFIYAD 109
+L+TGGAG++GSH +L+ D + VT+VDN G V+ + E F +
Sbjct: 8 ILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENF-----------E 56
Query: 110 LGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKT 169
L + V ++ E D + H A+ A P++ T TL +L +A
Sbjct: 57 LINHDVVEPLYIE--VDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNML-GLAKRVGAR 113
Query: 170 LIYSSTCATYGEPDKMPITES-----TPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMIL 224
L+ +ST YG+P+ P +E P P Y + K+++E + + K + V +
Sbjct: 114 LLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVA 173
Query: 225 RYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRD 284
R FN G P + + +S A +G L + G+ G+ R
Sbjct: 174 RIFNTFG----------PRMHMNDGRVVSNFILQALQG--EPLTVYGS------GSQTRA 215
Query: 285 YIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRP 344
+ V+DLV+ ++AL N+ N+G + ++ EF + K G ++++LS
Sbjct: 216 FQYVSDLVNG-LVALMNSNVSSP--VNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQ 272
Query: 345 GDYAEVYSDPSKIRDELNW 363
D + D K + L W
Sbjct: 273 DDPQKRKPDIKKAKLMLGW 291
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
Length = 361
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 87/341 (25%), Positives = 143/341 (41%), Gaps = 55/341 (16%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTI-VDNLS-RGNMGAVKVLQELFPQPGQLQFIYAD 109
+L+TGGAG+IGS ++K++ + +D L+ GN+ ++ + E + F +AD
Sbjct: 3 ILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISE----SNRYNFEHAD 58
Query: 110 LGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILE-------AM 162
+ D+ + +IF + DAVMH AA ++V S P + T +LE A+
Sbjct: 59 ICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSAL 118
Query: 163 AAHKVKTLIYS--STCATYGE---PDK------MPI-TESTPQKPINPYGKAKKMSEDII 210
K + ST YG+ PD+ +P+ TE+T P +PY +K S+ ++
Sbjct: 119 GEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLV 178
Query: 211 IDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIR 270
+ +T + ++ N G P I +A G L I
Sbjct: 179 RAWRRTYGLPTIVTNCSNNYG------------PYHFPEKLIPLVILNALEG--KPLPIY 224
Query: 271 GTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFV------ 324
G G +RD++ V D A + + K G+ YN+G + + V
Sbjct: 225 GK------GDQIRDWLYVEDHARALHMVVTEGKAGET--YNIGGHNEKKNLDVVFTICDL 276
Query: 325 --EACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDELNW 363
E KAT ++ Y++ RPG D KI EL W
Sbjct: 277 LDEIVPKATSYREQITYVADRPGHDRRYAIDAGKISRELGW 317
>pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|B Chain B, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|C Chain C, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|D Chain D, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
Length = 347
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 82/354 (23%), Positives = 145/354 (40%), Gaps = 41/354 (11%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+L+TGG G++GS+ A L + + DNLSR GA L L G +F++ D+
Sbjct: 4 LLITGGCGFLGSNLASFALSQGIDLIVFDNLSR--KGATDNLHWL-SSLGNFEFVHGDIR 60
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKT-L 170
+ V ++ + D+ H A + S P + TL +LEA+ + +
Sbjct: 61 NKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNI 120
Query: 171 IYSSTCATYGEPDKMPIT----------------ESTPQKPINPYGKAKKMSEDIIIDFS 214
IYSST YG+ ++ EST +PYG +K ++ ++D++
Sbjct: 121 IYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYA 180
Query: 215 KTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAAR---GIIPGLKIRG 271
+ + ++ R+ ++ G GR + G + C A GI I G
Sbjct: 181 RIFGLNTVVFRHSSMYG----GR-----QFATYDQGWVGWFCQKAVEIKNGINKPFTISG 231
Query: 272 TDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKAT 331
+G VRD + D++ + ALAN + +N+G S+
Sbjct: 232 ------NGKQVRDVLHAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLED 285
Query: 332 GVNIKVEY--LSRRPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKT 383
NI + + L R D +D KI + ++W+ + + G +Q + W +
Sbjct: 286 YCNIDMRFTNLPVRESDQRVFVADIKKITNAIDWSPKVSAKDG-VQKMYDWTSS 338
>pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
pdb|2PK3|B Chain B, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
Length = 321
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/326 (24%), Positives = 136/326 (41%), Gaps = 37/326 (11%)
Query: 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIY 107
G L+TG AG++G + A L + + V SR N + ++ I
Sbjct: 11 GSMRALITGVAGFVGKYLANHLTEQNVEVF---GTSRNNEAKLP----------NVEMIS 57
Query: 108 ADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKV 167
D+ D++ V K+ ++ D + H AA + V +S L + TL +L+A+ +
Sbjct: 58 LDIMDSQRVKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNL 117
Query: 168 KTLIYS-STCATYGE--PDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMIL 224
I + + YG P++ P++E +P++PYG +K + + K M ++
Sbjct: 118 DCRILTIGSSEEYGMILPEESPVSEENQLRPMSPYGVSKASVGMLARQYVKAYGMDIIHT 177
Query: 225 RYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIP-GLKIRGTDYNTADGTCVR 283
R FN IG P LG D A+ I+ ++ + + VR
Sbjct: 178 RTFNHIG--PGQSLGFVTQ--------------DFAKQIVDIEMEKQEPIIKVGNLEAVR 221
Query: 284 DYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEY--LS 341
D+ DV D+V A+ L K G V YNV +G G +++ ++ V I E L
Sbjct: 222 DFTDVRDIVQAYWLLSQYGKTGDV--YNVCSGIGTRIQDVLDLLLAMANVKIDTELNPLQ 279
Query: 342 RRPGDYAEVYSDPSKIRDELNWTARF 367
RP + + +++D W R
Sbjct: 280 LRPSEVPTLIGSNKRLKDSTGWKPRI 305
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/319 (25%), Positives = 133/319 (41%), Gaps = 42/319 (13%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVK--VLQELFPQPGQLQFIYAD 109
+L+TGGAG++GSH +L D + VT+VDN G V+ + E F +
Sbjct: 30 ILITGGAGFVGSHLTDKLXXDGHEVTVVDNFFTGRKRNVEHWIGHENF-----------E 78
Query: 110 LGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKT 169
L + V ++ E D + H A+ A P++ T TL L +A
Sbjct: 79 LINHDVVEPLYIE--VDQIYHLASPASPPNYXYNPIKTLKTNTIGTLNXL-GLAKRVGAR 135
Query: 170 LIYSSTCATYGEPDKMPITES-----TPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMIL 224
L+ +ST YG+P+ P +E P P Y + K+++E + K + V +
Sbjct: 136 LLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETXCYAYXKQEGVEVRVA 195
Query: 225 RYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRD 284
R FN G P + +S A +G L + G+ G+ R
Sbjct: 196 RIFNTFG----------PRXHXNDGRVVSNFILQALQG--EPLTVYGS------GSQTRA 237
Query: 285 YIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRP 344
+ V+DLV+ ++AL N+ N+G + ++ EF + K G ++++LS
Sbjct: 238 FQYVSDLVNG-LVALXNSNVSSP--VNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQ 294
Query: 345 GDYAEVYSDPSKIRDELNW 363
D + D K + L W
Sbjct: 295 DDPQKRKPDIKKAKLXLGW 313
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 85/348 (24%), Positives = 149/348 (42%), Gaps = 52/348 (14%)
Query: 52 VLVTGGAGYIGSHAALRLLKD--SYRVTIVDNLS-RGNMGAVKVLQELFPQPGQLQFIYA 108
++VTGGAG+IGS+ + + VT++D L+ GN ++ + +++ +
Sbjct: 7 IIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAIL-----GDRVELVVG 61
Query: 109 DLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK 168
D+ DA+ V+K+ A+ DA++H+AA ++ S +P + H T +LEA + ++
Sbjct: 62 DIADAELVDKLAAK--ADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIR 119
Query: 169 TLIYSSTCATYGEPDKMPITESTP---------------QKPINPYGKAKKMSEDIIIDF 213
+ ST YG+ +P+ E P P +PY K S+ I+ +
Sbjct: 120 -FHHVSTDEVYGD---LPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAW 175
Query: 214 SKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTD 273
++ + I N G P+ + + I + GI P L
Sbjct: 176 VRSFGVKATISNCSNNYG----------PYQHIEKF--IPRQITNILAGIKPKL------ 217
Query: 274 YNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGV 333
+G VRD+I D L + G+ Y +G ++ KE +E + G
Sbjct: 218 --YGEGKNVRDWIHTNDHSTGVWAILTKGRMGET--YLIGADGEKNNKEVLELILEKMGQ 273
Query: 334 -NIKVEYLSRRPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRW 380
++++ R G D SK+RDEL WT +FTD L+ +W
Sbjct: 274 PKDAYDHVTDRAGHDLRYAIDASKLRDELGWTPQFTDFSEGLEETIQW 321
>pdb|1T2A|A Chain A, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|B Chain B, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|C Chain C, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|D Chain D, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
Length = 375
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 93/364 (25%), Positives = 152/364 (41%), Gaps = 64/364 (17%)
Query: 38 STKAFPRHEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVT-IVDNLSRGNMGAVKVLQEL 96
K F H V L+TG G GS+ A LL+ Y V IV S N G + + L
Sbjct: 15 ENKYFQGHMRNVA--LITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRI---EHL 69
Query: 97 FPQP-----GQLQFIYADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNI 151
+ P G ++ Y DL D+ + KI E + + A ++V + + + Y ++
Sbjct: 70 YKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKPTEIYNLGAQSHV-KISFDLAEYTADV 128
Query: 152 TS-NTLVILEAMAA----HKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMS 206
TL +L+A+ + VK +ST YG+ ++P E+TP P +PYG AK +
Sbjct: 129 DGVGTLRLLDAVKTCGLINSVK-FYQASTSELYGKVQEIPQKETTPFYPRSPYGAAKLYA 187
Query: 207 EDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACF---DAARGI 263
I+++F + N+ + FN E+P GA F +R +
Sbjct: 188 YWIVVNFREAYNLFAVNGILFN----------HESPR---------RGANFVTRKISRSV 228
Query: 264 IPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEF 323
+ ++ + RD+ D V+A L L N +P + + TG+ SV+EF
Sbjct: 229 AKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQNDEPED---FVIATGEVHSVREF 285
Query: 324 VEA---------------------CKKATGVNIKVEYLSRRPGDYAEVYSDPSKIRDELN 362
VE CK+ V++ V+ RP + + D +K + +LN
Sbjct: 286 VEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYRPTEVDFLQGDCTKAKQKLN 345
Query: 363 WTAR 366
W R
Sbjct: 346 WKPR 349
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/297 (24%), Positives = 136/297 (45%), Gaps = 37/297 (12%)
Query: 52 VLVTGGAGYIGSHAALRLLKD--SYRVTIVDNLSRGNM------GAVKVLQELFPQPGQL 103
+L+TGGAG++GS+ A ++ +V ++D + ++ + L G++
Sbjct: 13 ILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEV 72
Query: 104 QFIYADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMA 163
I AD+ + + ++ + FD + H AAV+ ++T+ + L +A
Sbjct: 73 --IAADINNPLDLRRL-EKLHFDYLFHQAAVS---DTTMLNQELVMKTNYQAFLNLLEIA 126
Query: 164 AHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMI 223
K +IY+S+ YG K P + P N YG +K ++ ++ S + + +
Sbjct: 127 RSKKAKVIYASSAGVYGNT-KAPNVVGKNESPENVYGFSKLCMDEFVL--SHSNDNVQVG 183
Query: 224 LRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVR 283
LRYFNV G P +E + + A G + +++ ++ G +R
Sbjct: 184 LRYFNVYG----------PREFYKE--KTASMVLQLALGAMAFKEVKLFEF----GEQLR 227
Query: 284 DYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYL 340
D++ + D++ A+V A+ K K G+YNVG + RS E V K+ G + KV Y+
Sbjct: 228 DFVYIEDVIQANVKAM---KAQKSGVYNVGYSQARSYNEIVSILKEHLG-DFKVTYI 280
>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli
pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Coli
Length = 355
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 91/337 (27%), Positives = 138/337 (40%), Gaps = 55/337 (16%)
Query: 52 VLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLS-RGNMGAVKVLQELFPQPGQLQFIYAD 109
+L+TGGAG+IGS ++ + S V +VD L+ GN+ ++ + Q + F D
Sbjct: 4 ILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVA----QSERFAFEKVD 59
Query: 110 LGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAH---- 165
+ D + ++F E+ D VMH AA ++V S P + T +LEA A+
Sbjct: 60 ICDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNAL 119
Query: 166 -----KVKTLIYSSTCATYGEPDKMP--ITESTPQKPINPYGKAKKMSEDIIIDFSKTTN 218
+ ST YG+ TE+TP P +PY +K S+ ++ + +T
Sbjct: 120 TEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSPYSASKASSDHLVRAWLRTYG 179
Query: 219 MAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTAD 278
+ +I N G P I +A G L + G +
Sbjct: 180 LPTLITNCSNNYG------------PYHFPEKLIPLMILNALAG--KSLPVYG------N 219
Query: 279 GTCVRDYIDVTDLVDAHVLAL-ANAKPGKVG-IYNVGTGKGRSVKEFVE---------AC 327
G +RD++ V D H AL A GKVG YN+G R + VE A
Sbjct: 220 GQQIRDWLYVED----HARALYCVATTGKVGETYNIGGHNERKNLDVVETICELLEELAP 275
Query: 328 KKATGV---NIKVEYLSRRPGDYAEVYSDPSKIRDEL 361
K GV + +++ RPG D SKI EL
Sbjct: 276 NKPHGVAHYRDLITFVADRPGHDLRYAIDASKIAREL 312
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 83/337 (24%), Positives = 136/337 (40%), Gaps = 54/337 (16%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
V +TG G IGSH A LL+ +V +DN + G +E L F+ +
Sbjct: 24 VFITGICGQIGSHIAELLLERGDKVVGIDNFATGR-------REHLKDHPNLTFVEGSIA 76
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTL---VILEAMAAHKVK 168
D VN++ + DAV+H AA S +P +Y++ +N + +++A + V
Sbjct: 77 DHALVNQLIGDLQPDAVVHTAA------SYKDPDDWYNDTLTNCVGGSNVVQAAKKNNVG 130
Query: 169 TLIYSSTCATYG-EPDKMPITESTPQKPIN-PYGKAKKMSEDIIIDFSKTTNMAVMILRY 226
+Y T YG +P + P+ P+ P N Y +K +ED + + + + + R
Sbjct: 131 RFVYFQTALCYGVKPIQQPVRLDHPRNPANSSYAISKSANEDYL----EYSGLDFVTFRL 186
Query: 227 FNVIGSDPEGRLGEAPHPELREHGRISGACF-DAARGIIPGLKIRGTDYNTADGTCVRDY 285
NV+G R P P + CF AR RD+
Sbjct: 187 ANVVGP----RNVSGPLPIFFQRLSEGKKCFVTKAR---------------------RDF 221
Query: 286 IDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRR-- 343
+ V DL A V A+ G Y+ +G ++KE +A +A + E R
Sbjct: 222 VFVKDLARATVRAVDGVGHGA---YHFSSGTDVAIKELYDAVVEAMALPSYPEPEIRELG 278
Query: 344 PGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRW 380
P D + DPS+ + FT L+ ++ A +
Sbjct: 279 PDDAPSILLDPSRTIQDFG-KIEFTPLKETVAAAVAY 314
>pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
Length = 345
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 88/338 (26%), Positives = 140/338 (41%), Gaps = 44/338 (13%)
Query: 53 LVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGD 112
L+TG G G++ A LL+ Y V D S G + + L+EL + ++ I+ DL +
Sbjct: 7 LITGIRGQDGAYLAKLLLEKGYEVYGADRRS-GEFASWR-LKELGIE-NDVKIIHMDLLE 63
Query: 113 AKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIY 172
+ + + D V + AA ++VG S +P+ L ILEA+ K T Y
Sbjct: 64 FSNIIRTIEKVQPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFY 123
Query: 173 -SSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIG 231
+ST +G+ ++P TE TP P +PY AK I +++ + NM FN
Sbjct: 124 QASTSEMFGKVQEIPQTEKTPFYPRSPYAVAKLFGHWITVNYREAYNMFACSGILFN--- 180
Query: 232 SDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDL 291
E+P LR ++ + I GL+ + N RD+ +
Sbjct: 181 -------HESP---LRGIEFVTRKITYSLARIKYGLQDKLVLGNL---NAKRDWGYAPEY 227
Query: 292 VDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIK--------------- 336
V+A L + +P Y + TG+ +V+EFVE K G +I+
Sbjct: 228 VEAMWLMMQQPEPDD---YVIATGETHTVREFVEKAAKIAGFDIEWVGEGINEKGIDRNT 284
Query: 337 ----VEYLSR--RPGDYAEVYSDPSKIRDELNWTARFT 368
VE RP + + +P K +L W R T
Sbjct: 285 GKVIVEVSEEFFRPAEVDILVGNPEKAMKKLGWKPRTT 322
>pdb|1DB3|A Chain A, E.Coli Gdp-Mannose 4,6-Dehydratase
Length = 372
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 82/358 (22%), Positives = 137/358 (38%), Gaps = 67/358 (18%)
Query: 53 LVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPG----QLQFIYA 108
L+TG G GS+ A LL+ Y V + R + + + ++ P + Y
Sbjct: 5 LITGVTGQDGSYLAEFLLEKGYEVHGIKR--RASSFNTERVDHIYQDPHTCNPKFHLHYG 62
Query: 109 DLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITS-NTLVILEA---MAA 164
DL D + +I E D V + A+++V S P Y ++ + TL +LEA +
Sbjct: 63 DLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESP-EYTADVDAMGTLRLLEAIRFLGL 121
Query: 165 HKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMIL 224
K +ST YG ++P E+TP P +PY AK + I +++ ++ M
Sbjct: 122 EKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESYGMYACNG 181
Query: 225 RYFNVIGSDPEGRLGEAPHP-ELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVR 283
FN E+P E +I+ A + A+G+ L + D +R
Sbjct: 182 ILFN----------HESPRRGETFVTRKITRAIANIAQGLESCLYLGNMD-------SLR 224
Query: 284 DYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVE----- 338
D+ D V + L +P + + TG SV++FVE G+ ++ E
Sbjct: 225 DWGHAKDYVKMQWMMLQQEQPED---FVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVE 281
Query: 339 ----------------------------YLSRRPGDYAEVYSDPSKIRDELNWTARFT 368
Y RP + + DP+K ++L W T
Sbjct: 282 EKGIVVSVTGHDAPGVKPGDVIIAVDPRYF--RPAEVETLLGDPTKAHEKLGWKPEIT 337
>pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|B Chain B, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|C Chain C, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|D Chain D, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|E Chain E, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|F Chain F, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|G Chain G, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|H Chain H, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|I Chain I, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|J Chain J, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
Length = 310
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/283 (24%), Positives = 120/283 (42%), Gaps = 41/283 (14%)
Query: 52 VLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRG----NMGAVKVLQELFPQPGQLQF 105
++VTGGAG+IGS+ ++ L D + +VDNL G N+ + + + + +Q
Sbjct: 2 IIVTGGAGFIGSNI-VKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDFLIQI 60
Query: 106 IYAD-LGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAA 164
+ + GD +A IF E A + + +Y + L
Sbjct: 61 MAGEEFGDVEA---IFHEGAXSSTTEWDG------------KYMMDNNYQYSKELLHYCL 105
Query: 165 HKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMIL 224
+ +Y+S+ ATYG I +KP+N YG +K + ++ + N ++
Sbjct: 106 EREIPFLYASSAATYGGRTSDFIESREYEKPLNVYGYSKFLFDEYVRQILPEANSQIVGF 165
Query: 225 RYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRD 284
RYFNV G EG G + +++ G P L G++ RD
Sbjct: 166 RYFNVYGP-REGHKGSMASVAFHLNTQLN-------NGESPKL-FEGSE------NFKRD 210
Query: 285 YIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEAC 327
++ V D+ D ++ L N G GI+N+GTG+ S + +A
Sbjct: 211 FVYVGDVADVNLWFLEN---GVSGIFNLGTGRAESFQAVADAT 250
>pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose
pdb|2X6T|B Chain B, Agme Bound To Adp-B-Mannose
pdb|2X6T|C Chain C, Agme Bound To Adp-B-Mannose
pdb|2X6T|D Chain D, Agme Bound To Adp-B-Mannose
pdb|2X6T|E Chain E, Agme Bound To Adp-B-Mannose
pdb|2X6T|F Chain F, Agme Bound To Adp-B-Mannose
pdb|2X6T|G Chain G, Agme Bound To Adp-B-Mannose
pdb|2X6T|H Chain H, Agme Bound To Adp-B-Mannose
pdb|2X6T|I Chain I, Agme Bound To Adp-B-Mannose
pdb|2X6T|J Chain J, Agme Bound To Adp-B-Mannose
pdb|2X86|A Chain A, Agme Bound To Adp-b-mannose
pdb|2X86|B Chain B, Agme Bound To Adp-b-mannose
pdb|2X86|C Chain C, Agme Bound To Adp-b-mannose
pdb|2X86|D Chain D, Agme Bound To Adp-b-mannose
pdb|2X86|E Chain E, Agme Bound To Adp-b-mannose
pdb|2X86|F Chain F, Agme Bound To Adp-b-mannose
pdb|2X86|G Chain G, Agme Bound To Adp-b-mannose
pdb|2X86|H Chain H, Agme Bound To Adp-b-mannose
pdb|2X86|I Chain I, Agme Bound To Adp-b-mannose
pdb|2X86|J Chain J, Agme Bound To Adp-b-mannose
pdb|2X86|K Chain K, Agme Bound To Adp-b-mannose
pdb|2X86|L Chain L, Agme Bound To Adp-b-mannose
pdb|2X86|M Chain M, Agme Bound To Adp-b-mannose
pdb|2X86|N Chain N, Agme Bound To Adp-b-mannose
pdb|2X86|O Chain O, Agme Bound To Adp-b-mannose
pdb|2X86|P Chain P, Agme Bound To Adp-b-mannose
pdb|2X86|Q Chain Q, Agme Bound To Adp-b-mannose
pdb|2X86|R Chain R, Agme Bound To Adp-b-mannose
pdb|2X86|S Chain S, Agme Bound To Adp-b-mannose
pdb|2X86|T Chain T, Agme Bound To Adp-b-mannose
Length = 357
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 120/283 (42%), Gaps = 41/283 (14%)
Query: 52 VLVTGGAGYIGSHAALRLLKDS--YRVTIVDNLSRG----NMGAVKVLQELFPQPGQLQF 105
++VTGGAG+IGS+ ++ L D + +VDNL G N+ + + + + +Q
Sbjct: 49 IIVTGGAGFIGSNI-VKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDFLIQI 107
Query: 106 IYAD-LGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAA 164
+ + GD +A IF E A + + +Y + L
Sbjct: 108 MAGEEFGDVEA---IFHEGACSSTTEWDG------------KYMMDNNYQYSKELLHYCL 152
Query: 165 HKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMIL 224
+ +Y+S+ ATYG I +KP+N +G +K + ++ + N ++
Sbjct: 153 EREIPFLYASSAATYGGRTSDFIESREYEKPLNVFGYSKFLFDEYVRQILPEANSQIVGF 212
Query: 225 RYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCVRD 284
RYFNV G EG G + +++ G P L G++ RD
Sbjct: 213 RYFNVYGP-REGHKGSMASVAFHLNTQLN-------NGESPKL-FEGSE------NFKRD 257
Query: 285 YIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEAC 327
++ V D+ D ++ L N G GI+N+GTG+ S + +A
Sbjct: 258 FVYVGDVADVNLWFLEN---GVSGIFNLGTGRAESFQAVADAT 297
>pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|B Chain B, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|C Chain C, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|D Chain D, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7H|A Chain A, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
pdb|1N7H|B Chain B, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
Length = 381
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 85/345 (24%), Positives = 143/345 (41%), Gaps = 41/345 (11%)
Query: 33 SPDSNSTKAFPRHEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKV 92
+P ++ST PR L+TG G GS+ LL Y V + + R + +
Sbjct: 17 APKADSTVVEPR-----KIALITGITGQDGSYLTEFLLGKGYEVHGL--IRRSSNFNTQR 69
Query: 93 LQELFPQPGQ-----LQFIYADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRY 147
+ ++ P ++ YADL DA ++ + D V + AA ++V S P
Sbjct: 70 INHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYT 129
Query: 148 YHNITSNTLVILEAMAAHKV---KTLIY--SSTCATYGEPDKMPITESTPQKPINPYGKA 202
+ + L +LEA+ +H + +T+ Y + + +G P +E+TP P +PY +
Sbjct: 130 ADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPP-PQSETTPFHPRSPYAAS 188
Query: 203 KKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARG 262
K + +++ + + FN E+P R ++ A
Sbjct: 189 KCAAHWYTVNYREAYGLFACNGILFN----------HESPR---RGENFVTRKITRALGR 235
Query: 263 IIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKE 322
I GL+ T + RD+ D V+A L L KP Y V T +G +V+E
Sbjct: 236 IKVGLQ---TKLFLGNLQASRDWGFAGDYVEAMWLMLQQEKPDD---YVVATEEGHTVEE 289
Query: 323 FVEACKKATGVNIK--VEYLSR--RPGDYAEVYSDPSKIRDELNW 363
F++ G+N K VE R RP + + D SK ++ L W
Sbjct: 290 FLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQGDASKAKEVLGW 334
>pdb|4ID9|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4ID9|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4IDG|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
pdb|4IDG|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
Length = 347
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 81/339 (23%), Positives = 141/339 (41%), Gaps = 49/339 (14%)
Query: 48 GVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIY 107
G +LVTG AG +G A + L+ R +L G +V+
Sbjct: 18 GSHMILVTGSAGRVG-RAVVAALRTQGRTVRGFDLRPSGTGGEEVV-------------- 62
Query: 108 ADLGDAKAVNKIFAENAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMA 163
L D +A++ DA+M +AV ++G + + R + T +L+A +
Sbjct: 63 GSLEDGQALS--------DAIMGVSAVLHLGAFMSWAPADRDRMFAVNVEGTRRLLDAAS 114
Query: 164 AHKVKTLIYSSTCATYGE--PDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAV 221
A V+ +++S+ Y E P+ +P+TE P P +PYG K + E+++ ++ M
Sbjct: 115 AAGVRRFVFASSGEVYPENRPEFLPVTEDHPLCPNSPYGLTKLLGEELVRFHQRSGAMET 174
Query: 222 MILRYFNVIGSDP---EGRLGEAPHPELREH-------GRISGACFDAARGIIPGLKIRG 271
+ILR+ + + E P LR G + A +R I I
Sbjct: 175 VILRFSHTQDATELLDEDSFFSGPRFFLRPRIHQQQNFGNAAIAELLQSRDIGEPSHILA 234
Query: 272 TDYNTADGTCVRDYI-DVTDLVDAHVLALANAKPGKVGIYNVGTGKGRSVKEFVEACKKA 330
+ N G R +I D D+V +LAL + + G +N+G + +
Sbjct: 235 RNEN---GRPFRMHITDTRDMVAGILLALDHPEAAG-GTFNLGADEPADFAALLPKIAAL 290
Query: 331 TGVNI-KVEYLSRRPGDYAEVYSDPSKIRDELNWTARFT 368
TG+ I V++ PGD ++ +IR+ L + A +T
Sbjct: 291 TGLPIVTVDF----PGDGVYYHTSNERIRNTLGFEAEWT 325
>pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A1N|B Chain B, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A4V|A Chain A, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A4V|B Chain B, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
Length = 317
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 81/189 (42%), Gaps = 14/189 (7%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+LVTG +G IG+ L + + N+ A ++Q G ++FI D+
Sbjct: 2 ILVTGSSGQIGTELVPYL---------AEKYGKKNVIASDIVQR---DTGGIKFITLDVS 49
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
+ +++ + + DA+ H A + + +P Y + T ILEA H+V+ ++
Sbjct: 50 NRDEIDRAVEKYSIDAIFHLAGIL-SAKGEKDPALAYKVNMNGTYNILEAAKQHRVEKVV 108
Query: 172 YSSTCATYG-EPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVI 230
ST +G E K + T +P YG K +E + + + + V LRY +I
Sbjct: 109 IPSTIGVFGPETPKNKVPSITITRPRTMYGVTKIAAELLGQYYYEKFGLDVRSLRYPGII 168
Query: 231 GSDPEGRLG 239
E G
Sbjct: 169 SYKAEPTAG 177
>pdb|1RPN|A Chain A, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|B Chain B, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|C Chain C, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|D Chain D, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
Length = 335
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 4/168 (2%)
Query: 53 LVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGD 112
LVTG G G++ A LL+ YRV + ++R + L+EL + G +Q+ D+ D
Sbjct: 18 LVTGITGQDGAYLAKLLLEKGYRVHGL--VARRSSDTRWRLRELGIE-GDIQYEDGDMAD 74
Query: 113 AKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLIY 172
A +V + + V + AA ++VG S +P+ +LEA+ +T Y
Sbjct: 75 ACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFY 134
Query: 173 -SSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNM 219
+ST +G E+TP P +PYG AK I +++ ++ +
Sbjct: 135 QASTSEMFGLIQAERQDENTPFYPRSPYGVAKLYGHWITVNYRESFGL 182
>pdb|3A9W|A Chain A, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A9W|B Chain B, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3AJR|A Chain A, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
pdb|3AJR|B Chain B, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
Length = 317
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 83/190 (43%), Gaps = 16/190 (8%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+LVTG +G IG+ L + + N+ A ++Q G ++FI D+
Sbjct: 2 ILVTGSSGQIGTELVPYL---------AEKYGKKNVIASDIVQR---DTGGIKFITLDVS 49
Query: 112 DAKAVNKIFAENAFDAVMHFAAV-AYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTL 170
+ +++ + + DA+ H A + + GE +P Y + T ILEA H+V+ +
Sbjct: 50 NRDEIDRAVEKYSIDAIFHLAGILSAKGEK--DPALAYKVNMNGTYNILEAAKQHRVEKV 107
Query: 171 IYSSTCATYG-EPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNV 229
+ ST +G E K + T +P +G K +E + + + + V LRY +
Sbjct: 108 VIPSTIGVFGPETPKNKVPSITITRPRTMFGVTKIAAELLGQYYYEKFGLDVRSLRYPGI 167
Query: 230 IGSDPEGRLG 239
I E G
Sbjct: 168 ISYKAEPTAG 177
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 79/190 (41%), Gaps = 18/190 (9%)
Query: 50 THVLVTGGAGYIGSHAALRLLK-DSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYA 108
T VL+ G G+IG+H RLL+ D Y V +D +G+ + + F F+
Sbjct: 14 TRVLILGVNGFIGNHLTERLLREDHYEVYGLD------IGSDAISR--FLNHPHFHFVEG 65
Query: 109 DLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK 168
D+ + + D V+ A+A E T PLR + L I+ ++ K
Sbjct: 66 DISIHSEWIEYHVKKC-DVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-K 123
Query: 169 TLIYSSTCATYG-------EPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAV 221
+I+ ST YG + D + KP Y +K++ + +I + + +
Sbjct: 124 RIIFPSTAEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQF 183
Query: 222 MILRYFNVIG 231
+ R FN +G
Sbjct: 184 TLFRPFNWMG 193
>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase
Domain
Length = 358
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 79/190 (41%), Gaps = 18/190 (9%)
Query: 50 THVLVTGGAGYIGSHAALRLLK-DSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYA 108
T VL+ G G+IG+H RLL+ D Y V +D +G+ + + F F+
Sbjct: 14 TRVLILGVNGFIGNHLTERLLREDHYEVYGLD------IGSDAISR--FLNHPHFHFVEG 65
Query: 109 DLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK 168
D+ + + D V+ A+A E T PLR + L I+ ++ K
Sbjct: 66 DISIHSEWIEYHVKKC-DVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-K 123
Query: 169 TLIYSSTCATYG-------EPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAV 221
+I+ ST YG + D + KP Y +K++ + +I + + +
Sbjct: 124 RIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQF 183
Query: 222 MILRYFNVIG 231
+ R FN +G
Sbjct: 184 TLFRPFNWMG 193
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 79/190 (41%), Gaps = 18/190 (9%)
Query: 50 THVLVTGGAGYIGSHAALRLLK-DSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYA 108
T VL+ G G+IG+H RLL+ D Y V +D +G+ + + F F+
Sbjct: 14 TRVLILGVNGFIGNHLTERLLREDHYEVYGLD------IGSDAISR--FLNHPHFHFVEG 65
Query: 109 DLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK 168
D+ + + D V+ A+A E T PLR + L I+ ++ K
Sbjct: 66 DISIHSEWIEYHVKKC-DVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-K 123
Query: 169 TLIYSSTCATYG-------EPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAV 221
+I+ ST YG + D + KP Y +K++ + +I + + +
Sbjct: 124 RIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQF 183
Query: 222 MILRYFNVIG 231
+ R FN +G
Sbjct: 184 TLFRPFNWMG 193
>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619e Mutant
Length = 358
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 79/190 (41%), Gaps = 18/190 (9%)
Query: 50 THVLVTGGAGYIGSHAALRLLK-DSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYA 108
T VL+ G G+IG+H RLL+ D Y V +D +G+ + + F F+
Sbjct: 14 TRVLILGVNGFIGNHLTERLLREDHYEVYGLD------IGSDAISR--FLNHPHFHFVEG 65
Query: 109 DLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK 168
D+ + + D V+ A+A E T PLR + L I+ ++ K
Sbjct: 66 DISIHSEWIEYHVKKC-DVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-K 123
Query: 169 TLIYSSTCATYG-------EPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAV 221
+I+ ST YG + D + KP Y +K++ + +I + + +
Sbjct: 124 RIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQF 183
Query: 222 MILRYFNVIG 231
+ R FN +G
Sbjct: 184 TLFRPFNWMG 193
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 79/190 (41%), Gaps = 18/190 (9%)
Query: 50 THVLVTGGAGYIGSHAALRLLK-DSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYA 108
T VL+ G G+IG+H RLL+ D Y V +D +G+ + + F F+
Sbjct: 14 TRVLILGVNGFIGNHLTERLLREDHYEVYGLD------IGSDAISR--FLNHPHFHFVEG 65
Query: 109 DLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK 168
D+ + + D V+ A+A E T PLR + L I+ ++ K
Sbjct: 66 DISIHSEWIEYHVKKC-DVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-K 123
Query: 169 TLIYSSTCATYG-------EPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAV 221
+I+ ST YG + D + KP Y +K++ + +I + + +
Sbjct: 124 RIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQF 183
Query: 222 MILRYFNVIG 231
+ R FN +G
Sbjct: 184 TLFRPFNWMG 193
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 78/190 (41%), Gaps = 18/190 (9%)
Query: 50 THVLVTGGAGYIGSHAALRLLK-DSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYA 108
T VL+ G G+IG+H RLL+ D Y V +D +G+ + P F+
Sbjct: 316 TRVLILGVNGFIGNHLTERLLREDHYEVYGLD------IGS-DAISRFLNHP-HFHFVEG 367
Query: 109 DLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK 168
D+ + + D V+ A+A E T PLR + L I+ ++ K
Sbjct: 368 DISIHSEWIEYHVKKC-DVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-K 425
Query: 169 TLIYSSTCATYG-------EPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAV 221
+I+ ST YG + D + KP Y +K++ + +I + + +
Sbjct: 426 RIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQF 485
Query: 222 MILRYFNVIG 231
+ R FN +G
Sbjct: 486 TLFRPFNWMG 495
>pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of
Arna
Length = 345
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 18/188 (9%)
Query: 52 VLVTGGAGYIGSHAALRLLK-DSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110
VL+ G G+IG+H RLL+ D Y V +D +G+ + + F F+ D+
Sbjct: 3 VLILGVNGFIGNHLTERLLREDHYEVYGLD------IGSDAISR--FLNHPHFHFVEGDI 54
Query: 111 GDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTL 170
+ + D V+ A+A E T PLR + L I+ ++ K +
Sbjct: 55 SIHSEWIEYHVKKC-DVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KRI 112
Query: 171 IYSSTCATYG-------EPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMI 223
I+ ST YG + D + KP Y +K++ + +I + + + +
Sbjct: 113 IFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTL 172
Query: 224 LRYFNVIG 231
R FN +G
Sbjct: 173 FRPFNWMG 180
>pdb|2HRZ|A Chain A, The Crystal Structure Of The Nucleoside-diphosphate-sugar
Epimerase From Agrobacterium Tumefaciens
Length = 342
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 74/179 (41%), Gaps = 27/179 (15%)
Query: 51 HVLVTGGAGYIGSHAALRLLKDSY-------RVTIVDNLSRGNMGAVKVLQELFPQ--PG 101
H+ + G AG +G RL+KD + T++D V Q P G
Sbjct: 16 HIAIIGAAGXVGRKLTQRLVKDGSLGGKPVEKFTLID-----------VFQPEAPAGFSG 64
Query: 102 QLQFIYADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEA 161
+ ADL K+ E D + H AA+ GE+ L+ + Y T + +A
Sbjct: 65 AVDARAADLSAPGEAEKL-VEARPDVIFHLAAIVS-GEAELDFDKGYRINLDGTRYLFDA 122
Query: 162 MAAHKVK-----TLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSK 215
+ K ++++S+ A +G P PI + P+ YG K + E ++ D+S+
Sbjct: 123 IRIANGKDGYKPRVVFTSSIAVFGAPLPYPIPDEFHTTPLTSYGTQKAICELLLSDYSR 181
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site
Length = 379
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 71/346 (20%), Positives = 137/346 (39%), Gaps = 47/346 (13%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+ +TG G+I SH A RL + + V D +M +++F +F DL
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHM-----TEDMFCD----EFHLVDLR 82
Query: 112 DAKAVNKIF--AENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKT 169
+ K+ ++ F+ + ++ +S + Y N T + ++EA + +K
Sbjct: 83 VMENCLKVTEGVDHVFNLAADMGGMGFI-QSNHSVIMY--NNTMISFNMIEAARINGIKR 139
Query: 170 LIYSSTCATYGEPDKMPIT-------ESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVM 222
Y+S+ Y E ++ T ++ P +P + YG K +E++ ++K +
Sbjct: 140 FFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGIECR 199
Query: 223 ILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCV 282
I R+ N+ G + G P A A+ ++ G DG
Sbjct: 200 IGRFHNIYGPFGTWKGGREKAP---------AAFCRKAQTSTDRFEMWG------DGLQT 244
Query: 283 RDYIDVTDLVDAHVLALANA---KPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEY 339
R + + + V+ VL L + +P N+G+ + S+ E E + + +
Sbjct: 245 RSFTFIDECVEG-VLRLTKSDFREP-----VNIGSDEMVSMNEMAEMVLSFEEKKLPIHH 298
Query: 340 LSRRPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHI 385
+ G SD + I+++L W L+ L+I + W K I
Sbjct: 299 IPGPEGVRGR-NSDNNLIKEKLGWAPNMR-LKEGLRITYFWIKEQI 342
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site
Length = 379
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 71/346 (20%), Positives = 137/346 (39%), Gaps = 47/346 (13%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+ +TG G+I SH A RL + + V D +M +++F +F DL
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHM-----TEDMFCD----EFHLVDLR 82
Query: 112 DAKAVNKIF--AENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKT 169
+ K+ ++ F+ + ++ +S + Y N T + ++EA + +K
Sbjct: 83 VMENCLKVTEGVDHVFNLAADMGGMGFI-QSNHSVIMY--NNTMISFNMIEAARINGIKR 139
Query: 170 LIYSSTCATYGEPDKMPIT-------ESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVM 222
Y+S+ Y E ++ T ++ P +P + YG K +E++ ++K +
Sbjct: 140 FFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGIECR 199
Query: 223 ILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCV 282
I R+ N+ G + G P A A+ ++ G DG
Sbjct: 200 IGRFHNIYGPFGTWKGGREAAP---------AAFCRKAQTSTDRFEMWG------DGLQT 244
Query: 283 RDYIDVTDLVDAHVLALANA---KPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEY 339
R + + + V+ VL L + +P N+G+ + S+ E E + + +
Sbjct: 245 RSFTFIDECVEG-VLRLTKSDFREP-----VNIGSDEMVSMNEMAEMVLSFEEKKLPIHH 298
Query: 340 LSRRPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHI 385
+ G SD + I+++L W L+ L+I + W K I
Sbjct: 299 IPGPEGVRGR-NSDNNLIKEKLGWAPNMR-LKEGLRITYFWIKEQI 342
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/346 (20%), Positives = 137/346 (39%), Gaps = 47/346 (13%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+ +TG G+I SH A RL + + V D +M +++F +F DL
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHM-----TEDMFCD----EFHLVDLR 82
Query: 112 DAKAVNKIF--AENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKT 169
+ K+ ++ F+ + ++ +S + Y N T + ++EA + +K
Sbjct: 83 VMENCLKVTEGVDHVFNLAADMGGMGFI-QSNHSVIMY--NNTMISFNMIEAARINGIKR 139
Query: 170 LIYSSTCATYGEPDKMPIT-------ESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVM 222
Y+S+ Y E ++ T ++ P +P + YG + +E++ ++K +
Sbjct: 140 FFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLERLATEELCKHYNKDFGIECR 199
Query: 223 ILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCV 282
I R+ N+ G + G P A A+ ++ G DG
Sbjct: 200 IGRFHNIYGPFGTWKGGREKAP---------AAFCRKAQTSTDRFEMWG------DGLQT 244
Query: 283 RDYIDVTDLVDAHVLALANA---KPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEY 339
R + + + V+ VL L + +P N+G+ + S+ E E + + +
Sbjct: 245 RSFTFIDECVEG-VLRLTKSDFREP-----VNIGSDEMVSMNEMAEMVLSFEEKKLPIHH 298
Query: 340 LSRRPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHI 385
+ G SD + I+++L W L+ L+I + W K I
Sbjct: 299 IPGPEGVRGR-NSDNNLIKEKLGWAPNMR-LKEGLRITYFWIKEQI 342
>pdb|1I24|A Chain A, High Resolution Crystal Structure Of The Wild-Type Protein
Sqd1, With Nad And Udp-Glucose
Length = 404
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 84/330 (25%), Positives = 126/330 (38%), Gaps = 55/330 (16%)
Query: 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPG-------- 101
+ V+V GG GY G AL L K +Y V IVDNL R L+ L P
Sbjct: 12 SRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRW 71
Query: 102 ------QLQFIYADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLR---YYHNIT 152
++ D+ D + + + F D+V+HF S ++ R HN
Sbjct: 72 KALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNV 131
Query: 153 SNTLVILEAMAAHKVKT-LIYSSTCATYGEPD------KMPITES-------TPQKPINP 198
TL +L A+ + L+ T YG P+ + IT + P++ +
Sbjct: 132 IGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSF 191
Query: 199 YGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELR---EHGRISGA 255
Y +K I K + L V G + H ELR ++ + G
Sbjct: 192 YHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTD---ETEMHEELRNRLDYDAVFGT 248
Query: 256 -----CFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALAN-AKPGKVGI 309
C AA G L + G G R Y+D+ D V +A+AN AK G+ +
Sbjct: 249 ALNRFCVQAAVG--HPLTVYG------KGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRV 300
Query: 310 YNVGTGKGRSVKEFVEACKKA---TGVNIK 336
+N T + SV E KA G+++K
Sbjct: 301 FNQFTEQ-FSVNELASLVTKAGSKLGLDVK 329
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/346 (20%), Positives = 137/346 (39%), Gaps = 47/346 (13%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+ +TG G+I SH A RL + + V D +M +++F +F DL
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHM-----TEDMFCD----EFHLVDLR 82
Query: 112 DAKAVNKIF--AENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKT 169
+ K+ ++ F+ + ++ +S + Y N T + ++EA + +K
Sbjct: 83 VMENCLKVTEGVDHVFNLAADMGGMGFI-QSNHSVIMY--NNTMISFNMIEAARINGIKR 139
Query: 170 LIYSSTCATYGEPDKMPIT-------ESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVM 222
Y+S+ Y E ++ T ++ P +P + +G K +E++ ++K +
Sbjct: 140 FFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFGIECR 199
Query: 223 ILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGTCV 282
I R+ N+ G + G P A A+ ++ G DG
Sbjct: 200 IGRFHNIYGPFGTWKGGREKAP---------AAFCRKAQTSTDRFEMWG------DGLQT 244
Query: 283 RDYIDVTDLVDAHVLALANA---KPGKVGIYNVGTGKGRSVKEFVEACKKATGVNIKVEY 339
R + + + V+ VL L + +P N+G+ + S+ E E + + +
Sbjct: 245 RSFTFIDECVEG-VLRLTKSDFREP-----VNIGSDEMVSMNEMAEMVLSFEEKKLPIHH 298
Query: 340 LSRRPGDYAEVYSDPSKIRDELNWTARFTDLQGSLQIAWRWQKTHI 385
+ G SD + I+++L W L+ L+I + W K I
Sbjct: 299 IPGPEGVRGR-NSDNNLIKEKLGWAPNMR-LKEGLRITYFWIKEQI 342
>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|B Chain B, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|C Chain C, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|D Chain D, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|E Chain E, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|F Chain F, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
Length = 311
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/249 (22%), Positives = 104/249 (41%), Gaps = 35/249 (14%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
+ VTGG G++G + + +K+ I+ S GN ++ +D
Sbjct: 5 IAVTGGTGFLGQYV-VESIKNDGNTPIILTRSIGNKAI-----------NDYEYRVSDYT 52
Query: 112 DAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKTLI 171
+N++ N DAV+H AA + + +H+ T + +A + + ++
Sbjct: 53 LEDLINQL---NDVDAVVHLAAT----RGSQGKISEFHDNEILTQNLYDACYENNISNIV 105
Query: 172 YSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIG 231
Y+ST + Y + +P E P YG +K E I +S+ + + LR+ ++ G
Sbjct: 106 YASTISAYSDETSLPWNEKELPLPDLXYGVSKLACEHIGNIYSRKKGLCIKNLRFAHLYG 165
Query: 232 SDPEGR------LGEAPHPE-LREHGR-ISGACF----DAARGIIPGL---KIRGTDYNT 276
+ + +A H E L H ++ F DAA+ +I L K+ GT +N
Sbjct: 166 FNEKNNYXINRFFRQAFHGEQLTLHANSVAKREFLYAKDAAKSVIYALKQEKVSGT-FNI 224
Query: 277 ADGTCVRDY 285
G + +Y
Sbjct: 225 GSGDALTNY 233
>pdb|1QRR|A Chain A, Crystal Structure Of Sqd1 Protein Complex With Nad And
Udp- Glucose
Length = 394
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 125/328 (38%), Gaps = 55/328 (16%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPG---------- 101
V+V GG GY G AL L K +Y V IVDNL R L+ L P
Sbjct: 4 VMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKA 63
Query: 102 ----QLQFIYADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLR---YYHNITSN 154
++ D+ D + + + F D+V+HF S ++ R HN
Sbjct: 64 LTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIG 123
Query: 155 TLVILEAMAAHKVKT-LIYSSTCATYGEPD------KMPITES-------TPQKPINPYG 200
TL +L A+ + L+ T YG P+ + IT + P++ + Y
Sbjct: 124 TLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYH 183
Query: 201 KAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELR---EHGRISGA-- 255
+K I K + L V G + H ELR ++ + G
Sbjct: 184 LSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTD---ETEMHEELRNRLDYDAVFGTAL 240
Query: 256 ---CFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALAN-AKPGKVGIYN 311
C AA G L + G G R Y+D+ D V +A+AN AK G+ ++N
Sbjct: 241 NRFCVQAAVG--HPLTVYG------KGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFN 292
Query: 312 VGTGKGRSVKEFVEACKKA---TGVNIK 336
T + SV E KA G+++K
Sbjct: 293 QFTEQ-FSVNELASLVTKAGSKLGLDVK 319
>pdb|1I2B|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex
With Nad And Udp-SulfoquinovoseUDP-Glucose
pdb|1I2C|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex
With Nad And Udp-Glucose
Length = 404
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 83/330 (25%), Positives = 125/330 (37%), Gaps = 55/330 (16%)
Query: 50 THVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPG-------- 101
+ V+V GG GY G AL L K +Y V IVDNL R L+ L P
Sbjct: 12 SRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRW 71
Query: 102 ------QLQFIYADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLR---YYHNIT 152
++ D+ D + + + F D+V+HF S ++ R HN
Sbjct: 72 KALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNV 131
Query: 153 SNTLVILEAMAAHKVKT-LIYSSTCATYGEPD------KMPITES-------TPQKPINP 198
TL +L A+ + L+ YG P+ + IT + P++ +
Sbjct: 132 IGTLNVLFAIKEFGEECHLVKLGAMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSF 191
Query: 199 YGKAKKMSEDIIIDFSKTTNMAVMILRYFNVIGSDPEGRLGEAPHPELR---EHGRISGA 255
Y +K I K + L V G + H ELR ++ + G
Sbjct: 192 YHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTD---ETEMHEELRNRLDYDAVFGT 248
Query: 256 -----CFDAARGIIPGLKIRGTDYNTADGTCVRDYIDVTDLVDAHVLALAN-AKPGKVGI 309
C AA G L + G G R Y+D+ D V +A+AN AK G+ +
Sbjct: 249 ALNRFCVQAAVG--HPLTVYG------KGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRV 300
Query: 310 YNVGTGKGRSVKEFVEACKKA---TGVNIK 336
+N T + SV E KA G+++K
Sbjct: 301 FNQFTEQ-FSVNELASLVTKAGSKLGLDVK 329
>pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|B Chain B, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|C Chain C, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|D Chain D, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|E Chain E, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|F Chain F, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
Length = 372
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 79/190 (41%), Gaps = 23/190 (12%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
VL+ G G+IG H + R+L+ + ++ +G + V E ++ F D+
Sbjct: 27 VLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDL-VKHE------RMHFFEGDI- 78
Query: 112 DAKAVNKIFAE---NAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK 168
+NK + E D ++ A+A +PLR + L I+ + + K
Sbjct: 79 ---TINKEWVEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG-K 134
Query: 169 TLIYSSTCATYG-------EPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAV 221
L++ ST YG +PD +T KP Y +K++ + +I + +
Sbjct: 135 HLVFPSTSEVYGMCADEQFDPDASALTYGPINKPRWIYACSKQLMDRVIWGYG-MEGLNF 193
Query: 222 MILRYFNVIG 231
+ R FN IG
Sbjct: 194 TLFRPFNWIG 203
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 69/158 (43%), Gaps = 9/158 (5%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSY--RVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYAD 109
V VTG +G+IGS +RLL+ Y R T+ D N+ VK L +L L AD
Sbjct: 8 VCVTGASGFIGSWLVMRLLERGYTVRATVRDP---TNVKKVKHLLDLPKAETHLTLWKAD 64
Query: 110 LGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVKT 169
L D + ++ A V H A E I ++ AA V+
Sbjct: 65 LADEGSFDE--AIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRR 122
Query: 170 LIYSSTCATYG-EPDKMPITESTPQKPINPYGKAKKMS 206
L+++S+ T + ++P+ + + + + +AKKM+
Sbjct: 123 LVFTSSAGTVNIQEHQLPVYDESCWSDME-FCRAKKMT 159
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 80/194 (41%), Gaps = 17/194 (8%)
Query: 51 HVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110
V VTGG G++GS LL++ Y V V L L +L F ADL
Sbjct: 3 RVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADL 62
Query: 111 GDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSN-TLVILEAMAAHK-VK 168
+ + FA V F + + + EP T + L IL+A K VK
Sbjct: 63 SNPDS----FAAAIEGCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVK 118
Query: 169 TLIYSS--TCATYGEPDKMPITESTPQ-----KPINPYG----KAKKMSEDIIIDFSKTT 217
IY+S + ++ DK + ES + + P+G +K ++E +++F +
Sbjct: 119 RFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQN 178
Query: 218 NMAVMILRYFNVIG 231
+ V+ L ++G
Sbjct: 179 GIDVVTLILPFIVG 192
>pdb|3AY3|A Chain A, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|B Chain B, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|C Chain C, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|D Chain D, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
Length = 267
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 75/166 (45%), Gaps = 27/166 (16%)
Query: 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYA 108
+ +LVTG AG +GS L ++ V + D + ++GA + +E+ +
Sbjct: 2 LNRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIV---DLGAAEAHEEI---------VAC 49
Query: 109 DLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLV----ILEAMAA 164
DL DA+AV+ + + D ++H V+ R +++I ++ + EA
Sbjct: 50 DLADAQAVHDLVKD--CDGIIHLGGVSVE--------RPWNDILQANIIGAYNLYEAARN 99
Query: 165 HKVKTLIYSSTCATYG-EPDKMPITESTPQKPINPYGKAKKMSEDI 209
++++S+ T G P I P++P + YG +K ED+
Sbjct: 100 LGKPRIVFASSNHTIGYYPRTTRIDTEVPRRPDSLYGLSKCFGEDL 145
>pdb|3I4F|A Chain A, Structure Of Putative 3-oxoacyl-reductase From Bacillus
Thuringiensis
pdb|3I4F|B Chain B, Structure Of Putative 3-oxoacyl-reductase From Bacillus
Thuringiensis
pdb|3I4F|C Chain C, Structure Of Putative 3-oxoacyl-reductase From Bacillus
Thuringiensis
pdb|3I4F|D Chain D, Structure Of Putative 3-oxoacyl-reductase From Bacillus
Thuringiensis
Length = 264
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 49 VTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQ-PGQLQFIY 107
V H L+T G +G +LL Y VT+ + A++ ++E + +LQF+
Sbjct: 7 VRHALITAGTKGLGKQVTEKLLAKGYSVTVT---YHSDTTAMETMKETYKDVEERLQFVQ 63
Query: 108 ADLGDAKAVNKIFAENAFDAVMHFAAVAYV 137
AD+ + ++KI E A+ HF + ++
Sbjct: 64 ADVTKKEDLHKIVEE----AMSHFGKIDFL 89
>pdb|3IUS|A Chain A, The Structure Of A Functionally Unknown Conserved Protein
From Silicibacter Pomeroyi Dss
pdb|3IUS|B Chain B, The Structure Of A Functionally Unknown Conserved Protein
From Silicibacter Pomeroyi Dss
Length = 286
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 59/152 (38%), Gaps = 33/152 (21%)
Query: 161 AMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMA 220
A A + + + Y ST A YG+ D + E+TP P G+ + +E + N+
Sbjct: 89 AARAAQFRWVGYLSTTAVYGDHDGAWVDETTPLTPTAARGRWRVXAEQ---QWQAVPNLP 145
Query: 221 VMILRYFNVIGSDPEGRLGEAPHPELREHGRISGACFDAARGIIPGLKIRGTDYNTADGT 280
+ + R + G G P +L + G R I PG
Sbjct: 146 LHVFRLAGIYGP------GRGPFSKLGKGG--------IRRIIKPG-------------- 177
Query: 281 CVRDYIDVTDLVDAHVLALANAKPGKVGIYNV 312
V I V D+ A VLA + A+P +YNV
Sbjct: 178 QVFSRIHVEDI--AQVLAASXARPDPGAVYNV 207
>pdb|3SLK|A Chain A, Structure Of Ketoreductase And Enoylreductase Didomain
From Modular Polyketide Synthase
pdb|3SLK|B Chain B, Structure Of Ketoreductase And Enoylreductase Didomain
From Modular Polyketide Synthase
Length = 795
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 52 VLVTGGAGYIGSHAALRLL--KDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYAD 109
VLVTGG G +G+ A L+ + + +V GA +++ +L ++ D
Sbjct: 533 VLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTAYGAEVSLQACD 592
Query: 110 LGDAKAVNKIFA----ENAFDAVMHFAAV 134
+ D + + K+ A E+ AV+H A V
Sbjct: 593 VADRETLAKVLASIPDEHPLTAVVHAAGV 621
>pdb|3OIC|A Chain A, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl) From
B. Subtilis (Apo Form)
pdb|3OIC|D Chain D, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl) From
B. Subtilis (Apo Form)
pdb|3OID|A Chain A, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl) From
B. Subtilis (Complex With Nadp And Tcl)
pdb|3OID|B Chain B, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl) From
B. Subtilis (Complex With Nadp And Tcl)
pdb|3OID|C Chain C, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl) From
B. Subtilis (Complex With Nadp And Tcl)
pdb|3OID|D Chain D, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl) From
B. Subtilis (Complex With Nadp And Tcl)
Length = 258
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 53 LVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGD 112
LVTG + +G AA+RL ++ Y + I N +R A++ +E+ ++ + A++G
Sbjct: 8 LVTGSSRGVGKAAAIRLAENGYNIVI--NYARSKKAALETAEEIEKLGVKVLVVKANVGQ 65
Query: 113 AKAVNKIFAE 122
+ ++F +
Sbjct: 66 PAKIKEMFQQ 75
>pdb|1IOL|A Chain A, Estrogenic 17-beta Hydroxysteroid Dehydrogenase Complexed
17-beta- Estradiol
Length = 327
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Query: 50 THVLVTGGAGYIGSHAALRLLKD---SYRV--TIVDNLSRGNMGAVKVLQELFPQPGQLQ 104
T VL+TG + IG H A+RL D S++V T+ D ++G + + + L PG L+
Sbjct: 3 TVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLW--EAARALACPPGSLE 60
Query: 105 FIYADLGDAKAV 116
+ D+ D+K+V
Sbjct: 61 TLQLDVRDSKSV 72
>pdb|1FDW|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant
H221q Complexed With Estradiol
Length = 327
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Query: 50 THVLVTGGAGYIGSHAALRLLKD---SYRV--TIVDNLSRGNMGAVKVLQELFPQPGQLQ 104
T VL+TG + IG H A+RL D S++V T+ D ++G + + + L PG L+
Sbjct: 3 TVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLW--EAARALACPPGSLE 60
Query: 105 FIYADLGDAKAV 116
+ D+ D+K+V
Sbjct: 61 TLQLDVRDSKSV 72
>pdb|1FDU|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant
H221l Complexed With Estradiol And Nadp+
pdb|1FDU|B Chain B, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant
H221l Complexed With Estradiol And Nadp+
pdb|1FDU|C Chain C, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant
H221l Complexed With Estradiol And Nadp+
pdb|1FDU|D Chain D, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant
H221l Complexed With Estradiol And Nadp+
pdb|1FDV|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant
H221l Complexed With Nad+
pdb|1FDV|B Chain B, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant
H221l Complexed With Nad+
pdb|1FDV|C Chain C, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant
H221l Complexed With Nad+
pdb|1FDV|D Chain D, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant
H221l Complexed With Nad+
Length = 327
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Query: 50 THVLVTGGAGYIGSHAALRLLKD---SYRV--TIVDNLSRGNMGAVKVLQELFPQPGQLQ 104
T VL+TG + IG H A+RL D S++V T+ D ++G + + + L PG L+
Sbjct: 3 TVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLW--EAARALACPPGSLE 60
Query: 105 FIYADLGDAKAV 116
+ D+ D+K+V
Sbjct: 61 TLQLDVRDSKSV 72
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 53/136 (38%), Gaps = 8/136 (5%)
Query: 44 RHEPGVTHVLVTGGAGYIGSHAALRLLKDSYRV--TIVDNLSRGNMGAVKVLQELFPQPG 101
+H G V GG G++ S LL+ Y V T+ D ++ + + LQEL G
Sbjct: 4 QHPIGKKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQEL----G 59
Query: 102 QLQFIYADLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEA 161
L+ ADL D + A D V H A + E I V+
Sbjct: 60 DLKIFRADLTDELSFEAPIA--GCDFVFHVATPVHFASEDPENDMIKPAIQGVVNVMKAC 117
Query: 162 MAAHKVKTLIYSSTCA 177
A VK +I +S+ A
Sbjct: 118 TRAKSVKRVILTSSAA 133
>pdb|1FDS|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1
Complexed With 17- Beta-Estradiol
pdb|1FDT|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1
Complexed With Estradiol And Nadp+
pdb|3KLM|X Chain X, 17beta-Hsd1 In Complex With Dht
Length = 327
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Query: 50 THVLVTGGAGYIGSHAALRLLKD---SYRV--TIVDNLSRGNMGAVKVLQELFPQPGQLQ 104
T VL+TG + IG H A+RL D S++V T+ D ++G + + + L PG L+
Sbjct: 3 TVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLW--EAARALACPPGSLE 60
Query: 105 FIYADLGDAKAV 116
+ D+ D+K+V
Sbjct: 61 TLQLDVRDSKSV 72
>pdb|1EQU|A Chain A, Type 1 17-Beta Hydroxysteroid Dehydrogenase Equilin
Complexed With Nadp+
pdb|1EQU|B Chain B, Type 1 17-Beta Hydroxysteroid Dehydrogenase Equilin
Complexed With Nadp+
pdb|1DHT|A Chain A, Estrogenic 17-Beta Hydroxysteroid Dehydrogenase Complexed
Dihydrotestosterone
pdb|3DHE|A Chain A, Estrogenic 17-Beta Hydroxysteroid Dehydrogenase Complexed
Dehydroepiandrosterone
pdb|1I5R|A Chain A, Type 1 17-Beta Hydroxysteroid Dehydrogenase Em1745 Complex
pdb|1JTV|A Chain A, Crystal Structure Of 17beta-Hydroxysteroid Dehydrogenase
Type 1 Complexed With Testosterone
pdb|1QYV|A Chain A, Crystal Structure Of Human Estrogenic
17beta-hydroxysteroid Dehydrogenase Complex With Nadp
pdb|1QYW|A Chain A, Crystal Structure Of Human Estrogenic
17beta-hydroxysteroid Dehydrogenase Comlex With
Androstanedione And Nadp
pdb|1QYX|A Chain A, Crystal Structure Of Human Estrogenic
17beta-Hydroxysteroid Dehydrogenase Complex With
Androstenedione And Nadp
pdb|1BHS|A Chain A, Human Estrogenic 17beta-hydroxysteroid Dehydrogenase
pdb|3DEY|X Chain X, Crystal Structure Of 17beta-Hsd1 With Dht In Normal And
Reverse Orientation.
pdb|3HB4|X Chain X, 17beta-Hydroxysteroid Dehydrogenase Type1 Complexed With
E2b
pdb|3HB5|X Chain X, Binary And Ternary Crystal Structures Of A Novel Inhibitor
Of 17 Beta-Hsd Type 1: A Lead Compound For Breast Cancer
Therapy
pdb|3KLP|X Chain X, 17beta-Hsd1 In Complex With A-Diol
pdb|3KM0|A Chain A, 17betahsd1 In Complex With 3beta-Diol
pdb|3KM0|B Chain B, 17betahsd1 In Complex With 3beta-Diol
Length = 327
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Query: 50 THVLVTGGAGYIGSHAALRLLKD---SYRV--TIVDNLSRGNMGAVKVLQELFPQPGQLQ 104
T VL+TG + IG H A+RL D S++V T+ D ++G + + + L PG L+
Sbjct: 3 TVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLW--EAARALACPPGSLE 60
Query: 105 FIYADLGDAKAV 116
+ D+ D+K+V
Sbjct: 61 TLQLDVRDSKSV 72
>pdb|1A27|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1
C-Terminal Deletion Mutant Complexed With Estradiol And
Nadp+
Length = 289
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Query: 50 THVLVTGGAGYIGSHAALRLLKD---SYRV--TIVDNLSRGNMGAVKVLQELFPQPGQLQ 104
T VL+TG + IG H A+RL D S++V T+ D ++G + + + L PG L+
Sbjct: 3 TVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLW--EAARALACPPGSLE 60
Query: 105 FIYADLGDAKAV 116
+ D+ D+K+V
Sbjct: 61 TLQLDVRDSKSV 72
>pdb|3U5T|A Chain A, The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Reductase From Sinorhizobium Meliloti
pdb|3U5T|B Chain B, The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Reductase From Sinorhizobium Meliloti
pdb|3U5T|C Chain C, The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Reductase From Sinorhizobium Meliloti
pdb|3U5T|D Chain D, The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Reductase From Sinorhizobium Meliloti
Length = 267
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 53 LVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGD 112
+VTG + IG+ A RL D + T+V N + A +V ++ G+ AD+ D
Sbjct: 31 IVTGASRGIGAAIAARLASDGF--TVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSD 88
Query: 113 AKAVNKIF--AENAFDAV 128
AV ++F AE AF V
Sbjct: 89 PAAVRRLFATAEEAFGGV 106
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 75/191 (39%), Gaps = 45/191 (23%)
Query: 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQ-----PG 101
P + VLVTG G++ SH +LL+ Y+V RG + L L + PG
Sbjct: 9 PEGSLVLVTGANGFVASHVVEQLLEHGYKV-------RGTARSASKLANLQKRWDAKYPG 61
Query: 102 QLQFIYADLGDAKAVNKIFAENAFDAVMHFAA-VAYVGESTLEPLRYYHNIT---SNTLV 157
+ + V + + A+D V+ AA VA++ +Y +T TL
Sbjct: 62 RFE--------TAVVEDMLKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLN 113
Query: 158 ILEAMAAH-KVKTLIYSSTCATYGEP-------------------DKMP-ITESTPQKPI 196
L A AA VK + +S+ + P DK + ES PQK +
Sbjct: 114 ALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSL 173
Query: 197 NPYGKAKKMSE 207
Y +K +E
Sbjct: 174 WVYAASKTEAE 184
>pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 84
+P V +V+V G +GYIG AA K +VT++D L R
Sbjct: 146 DPEVNNVVVIG-SGYIGIEAAEAFAKAGKKVTVIDILDR 183
>pdb|1GEG|A Chain A, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|B Chain B, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|C Chain C, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|D Chain D, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|E Chain E, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|F Chain F, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|G Chain G, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
pdb|1GEG|H Chain H, Cryatal Structure Analysis Of Meso-2,3-Butanediol
Dehydrogenase
Length = 256
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 14/91 (15%)
Query: 53 LVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGD 112
LVTG IG ALRL+KD + V I D + A V E+ G + D+ D
Sbjct: 6 LVTGAGQGIGKAIALRLVKDGFAVAIAD---YNDATAKAVASEINQAGGHAVAVKVDVSD 62
Query: 113 AKAVNKIFAE--------NAFDAVMHFAAVA 135
+++FA FD +++ A VA
Sbjct: 63 R---DQVFAAVEQARKTLGGFDVIVNNAGVA 90
>pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 84
+P V +V+V G +GYIG AA K +VT++D L R
Sbjct: 146 DPEVNNVVVIG-SGYIGIEAAEAFAKAGKKVTVIDILDR 183
>pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 84
+P V +V+V G +GYIG AA K +VT++D L R
Sbjct: 146 DPEVNNVVVIG-SGYIGIEAAEAFAKAGKKVTVIDILDR 183
>pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid
pdb|1NPX|A Chain A, Structure Of Nadh Peroxidase From Streptococcus Faecalis
10c1 Refined At 2.16 Angstroms Resolution
pdb|2NPX|A Chain A, Nadh Binding Site And Catalysis Of Nadh Peroxidase
Length = 447
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 84
+P V +V+V G +GYIG AA K +VT++D L R
Sbjct: 146 DPEVNNVVVIG-SGYIGIEAAEAFAKAGKKVTVIDILDR 183
>pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m
Length = 447
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 84
+P V +V+V G +GYIG AA K +VT++D L R
Sbjct: 146 DPEVNNVVVIG-SGYIGIEAAEAFAKAGKKVTVIDILDR 183
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
Length = 359
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 66/161 (40%), Gaps = 12/161 (7%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
V VTG G+ GS +L L T + + +G + LF + + +G
Sbjct: 12 VFVTGHTGFKGSWLSLWL-------TEMGAIVKGYALDAPTVPSLFEIVRLNDLMESHIG 64
Query: 112 DAKAVNKI---FAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAM-AAHKV 167
D + K+ AE + V H AA V S +P++ Y T+ +LE + +
Sbjct: 65 DIRDFEKLRSSIAEFKPEIVFHMAAQPLVRLSYEQPIKTYSTNVMGTVHLLETVKQVGNI 124
Query: 168 KTLIYSSTCATYGEPDKMP-ITESTPQKPINPYGKAKKMSE 207
K ++ ++ Y + + E+ P +PY +K +E
Sbjct: 125 KAVVNITSDKCYDNREWVWGYRENEPMGGYDPYSNSKGCAE 165
>pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 46 EPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSR 84
+P V +V+V G +GYIG AA K +VT++D L R
Sbjct: 146 DPEVNNVVVIG-SGYIGIEAAEAFAKAGKKVTVIDILDR 183
>pdb|3GEM|A Chain A, Crystal Structure Of Short-Chain Dehydrogenase From
Pseudomonas Syringae
pdb|3GEM|B Chain B, Crystal Structure Of Short-Chain Dehydrogenase From
Pseudomonas Syringae
pdb|3GEM|C Chain C, Crystal Structure Of Short-Chain Dehydrogenase From
Pseudomonas Syringae
pdb|3GEM|D Chain D, Crystal Structure Of Short-Chain Dehydrogenase From
Pseudomonas Syringae
Length = 260
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTI 78
+L+TG + +G H ALRLL+ +RV I
Sbjct: 30 ILITGASQRVGLHCALRLLEHGHRVII 56
>pdb|3A9C|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 321
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 36/93 (38%), Gaps = 20/93 (21%)
Query: 57 GAGYIGSHAA--LRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAK 114
GAG I AA L+L + + T VD + A K+L E P L
Sbjct: 19 GAGKIARSAAYALQLQAEKSKATNVDEFWKEMKQAAKILFETRPTAVSLP---------- 68
Query: 115 AVNKIFAENAFDAVMHFAAVAYVGESTLEPLRY 147
NA VMH +AY + LE LR+
Sbjct: 69 --------NALRYVMHRGKIAYSSGADLEQLRF 93
>pdb|3A9C|B Chain B, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 326
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 36/93 (38%), Gaps = 20/93 (21%)
Query: 57 GAGYIGSHAA--LRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAK 114
GAG I AA L+L + + T VD + A K+L E P L
Sbjct: 27 GAGKIARSAAYALQLQAEKSKATNVDEFWKEMKQAAKILFETRPTAVSLP---------- 76
Query: 115 AVNKIFAENAFDAVMHFAAVAYVGESTLEPLRY 147
NA VMH +AY + LE LR+
Sbjct: 77 --------NALRYVMHRGKIAYSSGADLEQLRF 101
>pdb|3A9C|D Chain D, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
pdb|3A9C|F Chain F, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 323
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 36/93 (38%), Gaps = 20/93 (21%)
Query: 57 GAGYIGSHAA--LRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAK 114
GAG I AA L+L + + T VD + A K+L E P L
Sbjct: 21 GAGKIARSAAYALQLQAEKSKATNVDEFWKEMKQAAKILFETRPTAVSLP---------- 70
Query: 115 AVNKIFAENAFDAVMHFAAVAYVGESTLEPLRY 147
NA VMH +AY + LE LR+
Sbjct: 71 --------NALRYVMHRGKIAYSSGADLEQLRF 95
>pdb|3A11|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|B Chain B, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|C Chain C, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|D Chain D, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|E Chain E, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|F Chain F, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
Length = 338
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 36/93 (38%), Gaps = 20/93 (21%)
Query: 57 GAGYIGSHAA--LRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAK 114
GAG I AA L+L + + T VD + A K+L E P L
Sbjct: 37 GAGKIARSAAYALQLQAEKSKATNVDEFWKEMKQAAKILFETRPTAVSLP---------- 86
Query: 115 AVNKIFAENAFDAVMHFAAVAYVGESTLEPLRY 147
NA VMH +AY + LE LR+
Sbjct: 87 --------NALRYVMHRGKIAYSSGADLEQLRF 111
>pdb|3A9C|C Chain C, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
pdb|3A9C|E Chain E, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 322
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 36/93 (38%), Gaps = 20/93 (21%)
Query: 57 GAGYIGSHAA--LRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAK 114
GAG I AA L+L + + T VD + A K+L E P L
Sbjct: 20 GAGKIARSAAYALQLQAEKSKATNVDEFWKEMKQAAKILFETRPTAVSLP---------- 69
Query: 115 AVNKIFAENAFDAVMHFAAVAYVGESTLEPLRY 147
NA VMH +AY + LE LR+
Sbjct: 70 --------NALRYVMHRGKIAYSSGADLEQLRF 94
>pdb|3VM6|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakarensis Kod1 In Complex With
Alpha-D-Ribose-1,5- Bisphosphate
pdb|3VM6|B Chain B, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakarensis Kod1 In Complex With
Alpha-D-Ribose-1,5- Bisphosphate
pdb|3VM6|C Chain C, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakarensis Kod1 In Complex With
Alpha-D-Ribose-1,5- Bisphosphate
Length = 338
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 36/93 (38%), Gaps = 20/93 (21%)
Query: 57 GAGYIGSHAA--LRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGDAK 114
GAG I AA L+L + + T VD + A K+L E P L
Sbjct: 37 GAGKIARSAAYALQLQAEKSKATNVDEFWKEMKQAAKILFETRPTAVSLP---------- 86
Query: 115 AVNKIFAENAFDAVMHFAAVAYVGESTLEPLRY 147
NA VMH +AY + LE LR+
Sbjct: 87 --------NALRYVMHRGKIAYSSGADLEQLRF 111
>pdb|2Z5L|A Chain A, The First Ketoreductase Of The Tylosin Pks
Length = 511
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 52 VLVTGGAGYIGSHAALRLLKD-SYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADL 110
VL+TGG G IG A RL + + R+ + GA ++ +EL ++ D+
Sbjct: 262 VLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDV 321
Query: 111 GDAKAVNKIFAENAFDAVMHFAAV 134
+ A+ + +AV H A +
Sbjct: 322 AERDALAALVTAYPPNAVFHTAGI 345
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 74/191 (38%), Gaps = 45/191 (23%)
Query: 47 PGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQ-----PG 101
P + VLVTG G++ SH +LL+ Y+V RG + L L + PG
Sbjct: 9 PEGSLVLVTGANGFVASHVVEQLLEHGYKV-------RGTARSASKLANLQKRWDAKYPG 61
Query: 102 QLQFIYADLGDAKAVNKIFAENAFDAVMHFAA-VAYVGESTLEPLRYYHNIT---SNTLV 157
+ + V + A+D V+ AA VA++ +Y +T TL
Sbjct: 62 RFE--------TAVVEDXLKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLN 113
Query: 158 ILEAMAAH-KVKTLIYSSTCATYGEP-------------------DKMP-ITESTPQKPI 196
L A AA VK + +S+ + P DK + ES PQK +
Sbjct: 114 ALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSL 173
Query: 197 NPYGKAKKMSE 207
Y +K +E
Sbjct: 174 WVYAASKTEAE 184
>pdb|2A4K|A Chain A, 3-Oxoacyl-[acyl Carrier Protein] Reductase From Thermus
Thermophilus Tt0137
pdb|2A4K|B Chain B, 3-Oxoacyl-[acyl Carrier Protein] Reductase From Thermus
Thermophilus Tt0137
Length = 263
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 10/60 (16%)
Query: 108 ADLGDAKAVNKIFAE-----NAFDAVMHFAAVAYVGESTLEPLRYYH-----NITSNTLV 157
AD+ D KAV +FAE V HFA VA+ S PL + N+T + LV
Sbjct: 59 ADVSDPKAVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLV 118
>pdb|4IQG|C Chain C, Crystal Structure Of Bpro0239 Oxidoreductase From
Polaromonas Sp. Js666 In Nadp Bound Form
pdb|4IQG|A Chain A, Crystal Structure Of Bpro0239 Oxidoreductase From
Polaromonas Sp. Js666 In Nadp Bound Form
pdb|4IQG|B Chain B, Crystal Structure Of Bpro0239 Oxidoreductase From
Polaromonas Sp. Js666 In Nadp Bound Form
pdb|4IQG|D Chain D, Crystal Structure Of Bpro0239 Oxidoreductase From
Polaromonas Sp. Js666 In Nadp Bound Form
Length = 271
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
VL+TGG+ IG+ +AL + Y V + N + + A +V++++ GQ + AD+
Sbjct: 28 VLITGGSRGIGAASALLAARQGYAVAV--NYASNSAAADEVVRQIREAGGQALAVQADVA 85
Query: 112 DAKAVNKIF 120
+ V F
Sbjct: 86 KEREVLAXF 94
>pdb|1IY8|A Chain A, Crystal Structure Of Levodione Reductase
pdb|1IY8|B Chain B, Crystal Structure Of Levodione Reductase
pdb|1IY8|C Chain C, Crystal Structure Of Levodione Reductase
pdb|1IY8|D Chain D, Crystal Structure Of Levodione Reductase
pdb|1IY8|E Chain E, Crystal Structure Of Levodione Reductase
pdb|1IY8|F Chain F, Crystal Structure Of Levodione Reductase
pdb|1IY8|G Chain G, Crystal Structure Of Levodione Reductase
pdb|1IY8|H Chain H, Crystal Structure Of Levodione Reductase
Length = 267
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
VL+TGG +G A+RL + ++++VD S G + + E P L + AD+
Sbjct: 16 VLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTV-ADVS 74
Query: 112 DAKAV 116
D V
Sbjct: 75 DEAQV 79
>pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|B Chain B, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|C Chain C, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|D Chain D, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
Length = 357
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 74/194 (38%), Gaps = 21/194 (10%)
Query: 52 VLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
V VTG G+ G +L L V +G + LF + +++G
Sbjct: 12 VFVTGHTGFKGGWLSLWLQTMGATV-------KGYSLTAPTVPSLFETARVADGMQSEIG 64
Query: 112 DAKAVNKIFA---ENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAM-AAHKV 167
D + NK+ E + V H AA V S EP+ Y T+ +LEA+ V
Sbjct: 65 DIRDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGV 124
Query: 168 KTLIYSSTCATYGEPDKM-PITESTPQKPINPYGKAKKMSEDIIIDFSKT---------T 217
K ++ ++ Y + + E+ +PY +K +E + + +
Sbjct: 125 KAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQH 184
Query: 218 NMAVMILRYFNVIG 231
AV +R NVIG
Sbjct: 185 GTAVATVRAGNVIG 198
>pdb|3GPI|A Chain A, Structure Of Putative Nad-Dependent EpimeraseDEHYDRATASE
From Methylobacillus Flagellatus
Length = 286
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 72/197 (36%), Gaps = 33/197 (16%)
Query: 53 LVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQELFPQPGQLQFIYADLGD 112
++ G G +G A RL + VT L R P P +Q + AD+
Sbjct: 6 ILIAGCGDLGLELARRLTAQGHEVT---GLRRSAQ----------PMPAGVQTLIADVTR 52
Query: 113 AKAVNKIFAENAFDAVMHFAAVAYVGE----STLEPLRYYHNITSNTLVILEAMAAHKVK 168
+ I V AA Y E S +E LR NTL LE V
Sbjct: 53 PDTLASIVHLRPEILVYCVAASEYSDEHYRLSYVEGLR-------NTLSALEGAPLQHV- 104
Query: 169 TLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILRYFN 228
+ S+ YG+ + + E TP + GK +E ++ +S T ILR+
Sbjct: 105 --FFVSSTGVYGQEVEEWLDEDTPPIAKDFSGKRMLEAEALLAAYSST------ILRFSG 156
Query: 229 VIGSDPEGRLGEAPHPE 245
+ G + +A PE
Sbjct: 157 IYGPGRLRMIRQAQTPE 173
>pdb|3E81|A Chain A, Structure-Function Analysis Of
2-Keto-3-Deoxy-D-Glycero-D-Galacto- Nononate-9-Phosphate
(Kdn) Phosphatase Defines A New Clad Within The Type C0
Had Subfamily
pdb|3E81|B Chain B, Structure-Function Analysis Of
2-Keto-3-Deoxy-D-Glycero-D-Galacto- Nononate-9-Phosphate
(Kdn) Phosphatase Defines A New Clad Within The Type C0
Had Subfamily
pdb|3E81|C Chain C, Structure-Function Analysis Of
2-Keto-3-Deoxy-D-Glycero-D-Galacto- Nononate-9-Phosphate
(Kdn) Phosphatase Defines A New Clad Within The Type C0
Had Subfamily
pdb|3E81|D Chain D, Structure-Function Analysis Of
2-Keto-3-Deoxy-D-Glycero-D-Galacto- Nononate-9-Phosphate
(Kdn) Phosphatase Defines A New Clad Within The Type C0
Had Subfamily
pdb|3E84|A Chain A, Structure-Function Analysis Of
2-Keto-3-Deoxy-D-Glycero-D-Galacto- Nononate-9-Phosphate
(Kdn) Phosphatase Defines A New Clad Within The Type C0
Had Subfamily
pdb|3E84|B Chain B, Structure-Function Analysis Of
2-Keto-3-Deoxy-D-Glycero-D-Galacto- Nononate-9-Phosphate
(Kdn) Phosphatase Defines A New Clad Within The Type C0
Had Subfamily
pdb|3E84|C Chain C, Structure-Function Analysis Of
2-Keto-3-Deoxy-D-Glycero-D-Galacto- Nononate-9-Phosphate
(Kdn) Phosphatase Defines A New Clad Within The Type C0
Had Subfamily
pdb|3E84|D Chain D, Structure-Function Analysis Of
2-Keto-3-Deoxy-D-Glycero-D-Galacto- Nononate-9-Phosphate
(Kdn) Phosphatase Defines A New Clad Within The Type C0
Had Subfamily
pdb|3E8M|A Chain A, Structure-Function Analysis Of
2-Keto-3-Deoxy-D-Glycero-D-Galacto- Nononate-9-Phosphate
(Kdn) Phosphatase Defines A New Clad Within The Type C0
Had Subfamily
pdb|3E8M|B Chain B, Structure-Function Analysis Of
2-Keto-3-Deoxy-D-Glycero-D-Galacto- Nononate-9-Phosphate
(Kdn) Phosphatase Defines A New Clad Within The Type C0
Had Subfamily
pdb|3E8M|C Chain C, Structure-Function Analysis Of
2-Keto-3-Deoxy-D-Glycero-D-Galacto- Nononate-9-Phosphate
(Kdn) Phosphatase Defines A New Clad Within The Type C0
Had Subfamily
pdb|3E8M|D Chain D, Structure-Function Analysis Of
2-Keto-3-Deoxy-D-Glycero-D-Galacto- Nononate-9-Phosphate
(Kdn) Phosphatase Defines A New Clad Within The Type C0
Had Subfamily
Length = 164
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 36 SNSTKAFPRHEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNMGAVKVLQE 95
S+S F H G+ ++TG I A +L D +VD LS A ++ E
Sbjct: 35 SDSAGIFWAHNKGIPVGILTGEKTEIVRRRAEKLKVDYLFQGVVDKLS----AAEELCNE 90
Query: 96 LFPQPGQLQFIYADLGDAKAVNKI 119
L Q+ +I DL DAK + ++
Sbjct: 91 LGINLEQVAYIGDDLNDAKLLKRV 114
>pdb|1VL0|A Chain A, Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reductase,
Rfbd Ortholog (Ca_c2315) From Clostridium Acetobutylicum
Atcc 824 At 2.05 A Resolution
pdb|1VL0|B Chain B, Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reductase,
Rfbd Ortholog (Ca_c2315) From Clostridium Acetobutylicum
Atcc 824 At 2.05 A Resolution
pdb|1VL0|C Chain C, Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reductase,
Rfbd Ortholog (Ca_c2315) From Clostridium Acetobutylicum
Atcc 824 At 2.05 A Resolution
Length = 292
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 48/117 (41%), Gaps = 5/117 (4%)
Query: 109 DLGDAKAVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVILEAMAAHKVK 168
D+ + AVNK F E + V++ AA V + E + I + L A A
Sbjct: 48 DITNVLAVNKFFNEKKPNVVINCAAHTAVDKCE-EQYDLAYKINAIGPKNLAAAAYSVGA 106
Query: 169 TLIYSSTCATYGEPDKMPITESTPQKPINPYGKAKKMSEDIIIDFSKTTNMAVMILR 225
++ ST + K PITE P + YGK K E +F K N I+R
Sbjct: 107 EIVQISTDYVFDGEAKEPITEFDEVNPQSAYGKTKLEGE----NFVKALNPKYYIVR 159
>pdb|2GDZ|A Chain A, Crystal Structure Of 15-Hydroxyprostaglandin Dehydrogenase
Type1, Complexed With Nad+
Length = 267
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 53 LVTGGAGYIGSHAALRLLKDSYRVTIVD-NLSRGNMGAVKVLQELFPQPGQLQFIYADLG 111
LVTG A IG A LL +V +VD NL G + L E F +P + FI D+
Sbjct: 11 LVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAG-VQCKAALHEQF-EPQKTLFIQCDVA 68
Query: 112 DAKAVNKIF 120
D + + F
Sbjct: 69 DQQQLRDTF 77
>pdb|1QLB|A Chain A, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1QLB|D Chain D, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
Length = 656
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 307 VGIYNVGTGKGRSVKEFVEACKKATGVNIKVEYLSRRPGDYAEVYSDPSKIR 358
VGI+ G +SVKE E KK+ V IK + L P + E Y P ++
Sbjct: 478 VGIFRDGPHLEKSVKELEELYKKSKNVGIKNKRLHANP-ELEEAYRVPMMLK 528
>pdb|3DC0|A Chain A, Crystal Structure Of Native Alpha-Amylase From Bacillus
Sp. Kr-8104
Length = 422
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 12/94 (12%)
Query: 310 YNVGTGKGRSVKEFVEACKKATGVNIKV---EYLSRRPGDYAEVYSDPSKIRDEL----- 361
Y +G S +EF E C A +KV ++ DYA + ++ I +
Sbjct: 64 YQIGNRYLGSEEEFKEMCAAAEEYGVKVIVDAVINHTTSDYAAISNEIKSISNWTHGNTQ 123
Query: 362 --NWTARFTDLQGSLQIAWRW--QKTHINGYGSR 391
NW+ R+ Q SL + W Q T + Y R
Sbjct: 124 IKNWSDRWDVTQNSLLGLYDWNTQNTQVQSYLKR 157
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 160 EAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKA---KKMSEDIIIDFSK 215
EA A ++K + A Y PD++ ES PQ + K + +SE ++ F K
Sbjct: 481 EAPKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKLLAGFKK 539
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 160 EAMAAHKVKTLIYSSTCATYGEPDKMPITESTPQKPINPYGKA---KKMSEDIIIDFSK 215
EA A ++K + A Y PD++ ES PQ + K + +SE ++ F K
Sbjct: 481 EAPKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKLLAGFKK 539
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,297,628
Number of Sequences: 62578
Number of extensions: 522518
Number of successful extensions: 1637
Number of sequences better than 100.0: 128
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 1381
Number of HSP's gapped (non-prelim): 139
length of query: 393
length of database: 14,973,337
effective HSP length: 101
effective length of query: 292
effective length of database: 8,652,959
effective search space: 2526664028
effective search space used: 2526664028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)