BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016209
(393 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 233 bits (593), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 124/315 (39%), Positives = 180/315 (57%), Gaps = 25/315 (7%)
Query: 78 MEYDFYRDSCPQAEGTIRAMVRYLHKSRSDVAPALLRLVFHDCFIEGCDASILLDDAEGV 137
+ +FY CP A TI++ V + + +LLRL FHDCF++GCDAS+LLDD
Sbjct: 2 LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNF 61
Query: 138 DSEKKSPPN-ESLKGYDVINIIKEELEEICPGVVSCADILALAAREGVVLAGGPFYPLYT 196
EK + PN S++G++VI+ IK ++E +CPGVVSCADILA+AAR+ VV GG + +
Sbjct: 62 TGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASWNVLL 121
Query: 197 GRKDSRLAFADIATLELPSPNADLSETLASFASRGFDLRETVTLLGAHSIGVIHCKFFNN 256
GR+DS A A +LP+P +LS +++F+++GF +E VTL GAH+IG C F
Sbjct: 122 GRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAFRT 181
Query: 257 RLHNFGRSNEPDPSLDPDFLNLLRSKCRNIXXXXXXXXXXYALLASTFDEPGINVTYDGH 316
R++N + ++DP + L++ C ++ S FD N
Sbjct: 182 RIYN-------ESNIDPTYAKSLQANCPSVGGDTNL---------SPFDVTTPN------ 219
Query: 317 QGGFGTVYYRSLLQNRGVLYADQQLMAGEETGIWVRAYASDVSLFRRDFALAMMKLSNLR 376
F YY +L +G+L++DQQL G T V AY+++ + F DF AM+K+ NL
Sbjct: 220 --KFDNAYYINLRNKKGLLHSDQQLFNGVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLS 277
Query: 377 VLTGPMGQIRLNCSK 391
LTG GQIR NC K
Sbjct: 278 PLTGTSGQIRTNCRK 292
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 222 bits (566), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 122/317 (38%), Positives = 175/317 (55%), Gaps = 20/317 (6%)
Query: 78 MEYDFYRDSCPQAEGTIRAMVRYLHKSRSDVAPALLRLVFHDCFIEGCDASILLDDAEGV 137
+ FY +CP A +R+ ++ +S + + +L+RL FHDCF+ GCDASILLDD +
Sbjct: 3 LNATFYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGSI 62
Query: 138 DSEKKSPPN-ESLKGYDVINIIKEELEEICPGVVSCADILALAAREGVVLAGGPFYPLYT 196
SEK + PN S +G++V++ IK LE CPGVVSC+D+LALA+ V LAGGP + +
Sbjct: 63 QSEKNAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWTVLL 122
Query: 197 GRKDSRLAFADIATLELPSPNADLSETLASFASRGFDLRETVTLLGAHSIGVIHCKFFNN 256
GR+DS A A +PSP LS F++ G + + V L GAH+ G C FNN
Sbjct: 123 GRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVALSGAHTFGRARCGVFNN 182
Query: 257 RLHNFGRSNEPDPSLDPDFLNLLRSKCRNIXXXXXXXXXXYALLASTFDEPGINVTYDGH 316
RL NF + PDP+L+ L+ L+ C L ST D
Sbjct: 183 RLFNFSGTGNPDPTLNSTLLSTLQQLC----PQNGSASTITNLDLSTPD----------- 227
Query: 317 QGGFGTVYYRSLLQNRGVLYADQQLMA--GEETGIWVRAYASDVSLFRRDFALAMMKLSN 374
F Y+ +L N G+L +DQ+L + G T V ++AS+ +LF + FA +M+ + N
Sbjct: 228 --AFDNNYFANLQSNDGLLQSDQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGN 285
Query: 375 LRVLTGPMGQIRLNCSK 391
+ LTG G+IRL+C K
Sbjct: 286 ISPLTGSNGEIRLDCKK 302
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 218 bits (555), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 119/316 (37%), Positives = 172/316 (54%), Gaps = 20/316 (6%)
Query: 78 MEYDFYRDSCPQAEGTIRAMVRYLHKSRSDVAPALLRLVFHDCFIEGCDASILLDDAEGV 137
++ FY SCP AE ++ V + S +AP L+R+ FHDCF+ GCDAS+LLD
Sbjct: 2 LQIGFYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANN 61
Query: 138 DSEKKSPPNE-SLKGYDVINIIKEELEEICPGVVSCADILALAAREGVVLAGGPFYPLYT 196
+EK + PN SL+G++VI K +E CP VSCADILA AAR+ LAG Y + +
Sbjct: 62 TAEKDAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQVPS 121
Query: 197 GRKDSRLAFADIATLELPSPNADLSETLASFASRGFDLRETVTLLGAHSIGVIHCKFFNN 256
GR+D ++ A A ++PSP + ++ + SFA++ E VTL GAHSIGV HC F N
Sbjct: 122 GRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCSSFTN 181
Query: 257 RLHNFGRSNEPDPSLDPDFLNLLRSKCRNIXXXXXXXXXXYALLASTFD--EPGINVTYD 314
RL+NF + DP+L P + LLR+ C + + + D P +
Sbjct: 182 RLYNFNSGSGIDPTLSPSYAALLRNTC-------PANSTRFTPITVSLDIITPSV----- 229
Query: 315 GHQGGFGTVYYRSLLQNRGVLYADQQLMAGEETGIWVRAYASDVSLFRRDFALAMMKLSN 374
+YY + G+L +DQ L+ V+A A +++ + FA AM+K+
Sbjct: 230 -----LDNMYYTGVQLTLGLLTSDQALVTEANLSAAVKANAMNLTAWASKFAQAMVKMGQ 284
Query: 375 LRVLTGPMGQIRLNCS 390
+ VLTG G+IR NCS
Sbjct: 285 IEVLTGTQGEIRTNCS 300
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 209 bits (533), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 121/318 (38%), Positives = 177/318 (55%), Gaps = 20/318 (6%)
Query: 77 SMEYDFYRDSCPQAEGTIRAMVRYLHKSRSDVAPALLRLVFHDCFIEGCDASILLDDAEG 136
S+ FY +CP A +R +V+ +S S + +L+RL FHDCF+ GCDASILLD++
Sbjct: 3 SLNATFYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNSGS 62
Query: 137 VDSEKKSPPN-ESLKGYDVINIIKEELEEICPGVVSCADILALAAREGVVLAGGPFYPLY 195
+ SEK + PN S +G++V++ IK LE CPGVVSC D+LALA++ V L+GGP + +
Sbjct: 63 IISEKNAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSWTVD 122
Query: 196 TGRKDSRLAFADIATLELPSPNADLSETLASFASRGFDLRETVTLLGAHSIGVIHCKFFN 255
GR+D+ A A +PSP LS + F++ G + + V L GAH+ G C F+
Sbjct: 123 LGRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVALSGAHTFGRATCGVFS 182
Query: 256 NRLHNFGRSNEPDPSLDPDFLNLLRSKCRNIXXXXXXXXXXYALLASTFDEPGINVTYDG 315
NRL NF PDP+L+ L+ L+ C L ST D
Sbjct: 183 NRLFNFSGKGNPDPTLNTTLLSTLQELC----PQKGRGSGSTNLDLSTPDA--------- 229
Query: 316 HQGGFGTVYYRSLLQNRGVLYADQQLMA--GEETGIWVRAYASDVSLFRRDFALAMMKLS 373
F Y+ +L N G+L +DQ+L + G T V ++AS+ +LF + FA +M+ +
Sbjct: 230 ----FDNNYFTNLQSNNGLLQSDQELFSTTGSATIAIVTSFASNQTLFFQAFAQSMINMG 285
Query: 374 NLRVLTGPMGQIRLNCSK 391
N+ LTG G+IRL+C K
Sbjct: 286 NISPLTGSSGEIRLDCKK 303
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 205 bits (522), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 125/314 (39%), Positives = 174/314 (55%), Gaps = 28/314 (8%)
Query: 81 DFYRDSCPQAEGTIRAMVRYLHKSRSDVAPALLRLVFHDCFIEGCDASILLDDAEGVDSE 140
D Y SCP +R V K+ +A +L+RL FHDCF+ GCDAS+LLD G DSE
Sbjct: 5 DIYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLLD---GADSE 61
Query: 141 KKSPPN-ESLKGYDVINIIKEELEEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRK 199
K + PN S +G++VI+ IK +E CPGVVSCADIL LAAR+ VVL+GGP + + GRK
Sbjct: 62 KLAIPNINSARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVVLSGGPGWRVALGRK 121
Query: 200 DSRLAFADIATLELPSPNADLSETLASFASRGFDLRETVTLLGAHSIGVIHCKFFNNRLH 259
D +A + A LPSP L +A F + ++ + V L GAH+ G C F+NRL
Sbjct: 122 DGLVANQNSAN-NLPSPFEPLDAIIAKFVAVNLNITDVVALSGAHTFGQAKCAVFSNRLF 180
Query: 260 NFGRSNEPDPSLDPDFLNLLRSKCRNIXXXXXXXXXXYALLASTFDEPGINVTYDGHQGG 319
NF + PD +L+ L+ L++ C L ST D T+D +
Sbjct: 181 NFTGAGNPDATLETSLLSNLQTVC----PLGGNSNITAPLDRSTTD------TFDNN--- 227
Query: 320 FGTVYYRSLLQNRGVLYADQQL----MAGEETGIWVRAYASDVSLFRRDFALAMMKLSNL 375
Y+++LL+ +G+L +DQ L +A T V AY+ SLF RDF AM+++ N+
Sbjct: 228 ----YFKNLLEGKGLLSSDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCAMIRMGNI 283
Query: 376 RVLTGPMGQIRLNC 389
G G++R NC
Sbjct: 284 S--NGASGEVRTNC 295
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 202 bits (515), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 118/312 (37%), Positives = 182/312 (58%), Gaps = 20/312 (6%)
Query: 82 FYRDSCPQAEGTIRAMVRYLHKSRSDVAPALLRLVFHDCFIEGCDASILLDDAEGVDSEK 141
FYR++CP + ++ + + +L+RL FHDCF++GCD S+LL++ + ++SE+
Sbjct: 6 FYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDTIESEQ 65
Query: 142 KSPPN-ESLKGYDVINIIKEELEEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKD 200
+ PN S++G DV+N IK +E CP VSCADILA+AA VL GGP +P+ GR+D
Sbjct: 66 DALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVPLGRRD 125
Query: 201 SRLAFADIATLELPSPNADLSETLASFASRGFDLRETVTLLGAHSIGVIHCKFFNNRLHN 260
S A +A LP+P +L++ ASFA +G + + VTL G H+ G C F NRL+N
Sbjct: 126 SLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCSTFINRLYN 185
Query: 261 FGRSNEPDPSLDPDFLNLLRSKCRNIXXXXXXXXXXYALLASTFDEPGINVTYDGHQGGF 320
F + PDP+L+ +L +LR++C L ST D+ F
Sbjct: 186 FSNTGNPDPTLNTTYLEVLRARC----PQNATGDNLTNLDLSTPDQ-------------F 228
Query: 321 GTVYYRSLLQNRGVLYADQQLMA--GEETGIWVRAYASDVSLFRRDFALAMMKLSNLRVL 378
YY +LLQ G+L +DQ+L + G +T V +++S+ + F +F ++M+K+ N+ VL
Sbjct: 229 DNRYYSNLLQLNGLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVL 288
Query: 379 TGPMGQIRLNCS 390
TG G+IRL C+
Sbjct: 289 TGDEGEIRLQCN 300
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 197 bits (500), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 116/313 (37%), Positives = 168/313 (53%), Gaps = 22/313 (7%)
Query: 82 FYRDSCPQAEGTIRAMVRYLHKSRSDVAPALLRLVFHDCFIEGCDASILLDDAEGVDSEK 141
FY +SCP +R + +S +A ++LRL FHDCF+ GCDASILLD+ +EK
Sbjct: 6 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 65
Query: 142 KSPPN-ESLKGYDVINIIKEELEEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKD 200
+ N S +G+ VI+ +K +E CP VSCAD+L +AA++ V LAGGP + + GR+D
Sbjct: 66 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRD 125
Query: 201 SRLAFADIATLELPSPNADLSETLASFASRGFDL-RETVTLLGAHSIGVIHCKFFNNRLH 259
S AF D+A LP+P L + SF + G + + V L G HS G C+F +RL+
Sbjct: 126 SLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHSFGKNQCRFIMDRLY 185
Query: 260 NFGRSNEPDPSLDPDFLNLLRSKCRNIXXXXXXXXXXYALLASTFDEPGINVTYDGHQGG 319
NF + PDP+L+ +L LR C AL+ P I
Sbjct: 186 NFSNTGLPDPTLNTTYLQTLRGLC-------PLNGNLSALVDFDLRTPTI---------- 228
Query: 320 FGTVYYRSLLQNRGVLYADQQLMA---GEETGIWVRAYASDVSLFRRDFALAMMKLSNLR 376
F YY +L + +G++ +DQ+L + +T VR++A+ F F AM ++ N+
Sbjct: 229 FDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNIT 288
Query: 377 VLTGPMGQIRLNC 389
LTG GQIRLNC
Sbjct: 289 PLTGTQGQIRLNC 301
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 196 bits (498), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 115/313 (36%), Positives = 168/313 (53%), Gaps = 22/313 (7%)
Query: 82 FYRDSCPQAEGTIRAMVRYLHKSRSDVAPALLRLVFHDCFIEGCDASILLDDAEGVDSEK 141
FY +SCP +R + +S +A ++LRL FHDCF+ GCDASILLD+ +EK
Sbjct: 7 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 66
Query: 142 KSPPN-ESLKGYDVINIIKEELEEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKD 200
+ N S +G+ VI+ +K +E CP VSCAD+L +AA++ V LAGGP + + GR+D
Sbjct: 67 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRD 126
Query: 201 SRLAFADIATLELPSPNADLSETLASFASRGFDL-RETVTLLGAHSIGVIHCKFFNNRLH 259
S AF D+A LP+P L + SF + G + + V L G H+ G C+F +RL+
Sbjct: 127 SLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLY 186
Query: 260 NFGRSNEPDPSLDPDFLNLLRSKCRNIXXXXXXXXXXYALLASTFDEPGINVTYDGHQGG 319
NF + PDP+L+ +L LR C AL+ P I
Sbjct: 187 NFSNTGLPDPTLNTTYLQTLRGLC-------PLNGNLSALVDMDLRTPTI---------- 229
Query: 320 FGTVYYRSLLQNRGVLYADQQLMA---GEETGIWVRAYASDVSLFRRDFALAMMKLSNLR 376
F YY +L + +G++ +DQ+L + +T VR++A+ F F AM ++ N+
Sbjct: 230 FDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNIT 289
Query: 377 VLTGPMGQIRLNC 389
LTG GQIRLNC
Sbjct: 290 PLTGTQGQIRLNC 302
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 196 bits (498), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 115/313 (36%), Positives = 168/313 (53%), Gaps = 22/313 (7%)
Query: 82 FYRDSCPQAEGTIRAMVRYLHKSRSDVAPALLRLVFHDCFIEGCDASILLDDAEGVDSEK 141
FY +SCP +R + +S +A ++LRL FHDCF+ GCDASILLD+ +EK
Sbjct: 6 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 65
Query: 142 KSPPN-ESLKGYDVINIIKEELEEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKD 200
+ N S +G+ VI+ +K +E CP VSCAD+L +AA++ V LAGGP + + GR+D
Sbjct: 66 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRD 125
Query: 201 SRLAFADIATLELPSPNADLSETLASFASRGFDL-RETVTLLGAHSIGVIHCKFFNNRLH 259
S AF D+A LP+P L + SF + G + + V L G H+ G C+F +RL+
Sbjct: 126 SLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALYGGHTFGKNQCRFIMDRLY 185
Query: 260 NFGRSNEPDPSLDPDFLNLLRSKCRNIXXXXXXXXXXYALLASTFDEPGINVTYDGHQGG 319
NF + PDP+L+ +L LR C AL+ P I
Sbjct: 186 NFSNTGLPDPTLNTTYLQTLRGLC-------PLNGNLSALVDFDLRTPTI---------- 228
Query: 320 FGTVYYRSLLQNRGVLYADQQLMA---GEETGIWVRAYASDVSLFRRDFALAMMKLSNLR 376
F YY +L + +G++ +DQ+L + +T VR++A+ F F AM ++ N+
Sbjct: 229 FDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNIT 288
Query: 377 VLTGPMGQIRLNC 389
LTG GQIRLNC
Sbjct: 289 PLTGTQGQIRLNC 301
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 196 bits (498), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 115/313 (36%), Positives = 168/313 (53%), Gaps = 22/313 (7%)
Query: 82 FYRDSCPQAEGTIRAMVRYLHKSRSDVAPALLRLVFHDCFIEGCDASILLDDAEGVDSEK 141
FY +SCP +R + +S +A ++LRL FHDCF+ GCDASILLD+ +EK
Sbjct: 6 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 65
Query: 142 KSPPN-ESLKGYDVINIIKEELEEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKD 200
+ N S +G+ VI+ +K +E CP VSCAD+L +AA++ V LAGGP + + GR+D
Sbjct: 66 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRD 125
Query: 201 SRLAFADIATLELPSPNADLSETLASFASRGFDL-RETVTLLGAHSIGVIHCKFFNNRLH 259
S AF D+A LP+P L + SF + G + + V L G H+ G C+F +RL+
Sbjct: 126 SLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLY 185
Query: 260 NFGRSNEPDPSLDPDFLNLLRSKCRNIXXXXXXXXXXYALLASTFDEPGINVTYDGHQGG 319
NF + PDP+L+ +L LR C AL+ P I
Sbjct: 186 NFSNTGLPDPTLNTTYLQTLRGLC-------PLNGNLSALVDFDLRTPTI---------- 228
Query: 320 FGTVYYRSLLQNRGVLYADQQLMA---GEETGIWVRAYASDVSLFRRDFALAMMKLSNLR 376
F YY +L + +G++ +DQ+L + +T VR++A+ F F AM ++ N+
Sbjct: 229 FDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNIT 288
Query: 377 VLTGPMGQIRLNC 389
LTG GQIRLNC
Sbjct: 289 PLTGTQGQIRLNC 301
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 196 bits (497), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 115/313 (36%), Positives = 168/313 (53%), Gaps = 22/313 (7%)
Query: 82 FYRDSCPQAEGTIRAMVRYLHKSRSDVAPALLRLVFHDCFIEGCDASILLDDAEGVDSEK 141
FY +SCP +R + +S +A ++LRL FHDCF+ GCDASILLD+ +EK
Sbjct: 6 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 65
Query: 142 KSPPN-ESLKGYDVINIIKEELEEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKD 200
+ N S +G+ VI+ +K +E CP VSCAD+L +AA++ V LAGGP + + GR+D
Sbjct: 66 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRD 125
Query: 201 SRLAFADIATLELPSPNADLSETLASFASRGFDL-RETVTLLGAHSIGVIHCKFFNNRLH 259
S AF D+A LP+P L + SF + G + + V L G H+ G C+F +RL+
Sbjct: 126 SLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLY 185
Query: 260 NFGRSNEPDPSLDPDFLNLLRSKCRNIXXXXXXXXXXYALLASTFDEPGINVTYDGHQGG 319
NF + PDP+L+ +L LR C AL+ P I
Sbjct: 186 NFSNTGLPDPTLNTTYLQTLRGLC-------PLNGNLSALVDFDLRTPTI---------- 228
Query: 320 FGTVYYRSLLQNRGVLYADQQLMA---GEETGIWVRAYASDVSLFRRDFALAMMKLSNLR 376
F YY +L + +G++ +DQ+L + +T VR++A+ F F AM ++ N+
Sbjct: 229 FDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNIT 288
Query: 377 VLTGPMGQIRLNC 389
LTG GQIRLNC
Sbjct: 289 PLTGTQGQIRLNC 301
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 196 bits (497), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 115/313 (36%), Positives = 168/313 (53%), Gaps = 22/313 (7%)
Query: 82 FYRDSCPQAEGTIRAMVRYLHKSRSDVAPALLRLVFHDCFIEGCDASILLDDAEGVDSEK 141
FY +SCP +R + +S +A ++LRL FHDCF+ GCDASILLD+ +EK
Sbjct: 7 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 66
Query: 142 KSPPN-ESLKGYDVINIIKEELEEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKD 200
+ N S +G+ VI+ +K +E CP VSCAD+L +AA++ V LAGGP + + GR+D
Sbjct: 67 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRD 126
Query: 201 SRLAFADIATLELPSPNADLSETLASFASRGFDL-RETVTLLGAHSIGVIHCKFFNNRLH 259
S AF D+A LP+P L + SF + G + + V L G H+ G C+F +RL+
Sbjct: 127 SLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLY 186
Query: 260 NFGRSNEPDPSLDPDFLNLLRSKCRNIXXXXXXXXXXYALLASTFDEPGINVTYDGHQGG 319
NF + PDP+L+ +L LR C AL+ P I
Sbjct: 187 NFSNTGLPDPTLNTTYLQTLRGLC-------PLNGNLSALVDFDLRTPTI---------- 229
Query: 320 FGTVYYRSLLQNRGVLYADQQLMA---GEETGIWVRAYASDVSLFRRDFALAMMKLSNLR 376
F YY +L + +G++ +DQ+L + +T VR++A+ F F AM ++ N+
Sbjct: 230 FDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNIT 289
Query: 377 VLTGPMGQIRLNC 389
LTG GQIRLNC
Sbjct: 290 PLTGTQGQIRLNC 302
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 195 bits (496), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 115/313 (36%), Positives = 167/313 (53%), Gaps = 22/313 (7%)
Query: 82 FYRDSCPQAEGTIRAMVRYLHKSRSDVAPALLRLVFHDCFIEGCDASILLDDAEGVDSEK 141
FY +SCP +R + +S +A ++LRL FHDCF+ GCDASILLD+ +EK
Sbjct: 7 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 66
Query: 142 KSPPN-ESLKGYDVINIIKEELEEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKD 200
+ N S +G+ VI+ +K +E CP VSCAD+L +AA++ V LAGGP + + GR+D
Sbjct: 67 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRD 126
Query: 201 SRLAFADIATLELPSPNADLSETLASFASRGFDL-RETVTLLGAHSIGVIHCKFFNNRLH 259
S AF D+A LP P L + SF + G + + V L G H+ G C+F +RL+
Sbjct: 127 SLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLY 186
Query: 260 NFGRSNEPDPSLDPDFLNLLRSKCRNIXXXXXXXXXXYALLASTFDEPGINVTYDGHQGG 319
NF + PDP+L+ +L LR C AL+ P I
Sbjct: 187 NFSNTGLPDPTLNTTYLQTLRGLC-------PLNGNLSALVDFDLRTPTI---------- 229
Query: 320 FGTVYYRSLLQNRGVLYADQQLMA---GEETGIWVRAYASDVSLFRRDFALAMMKLSNLR 376
F YY +L + +G++ +DQ+L + +T VR++A+ F F AM ++ N+
Sbjct: 230 FDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNIT 289
Query: 377 VLTGPMGQIRLNC 389
LTG GQIRLNC
Sbjct: 290 PLTGTQGQIRLNC 302
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 195 bits (496), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 115/313 (36%), Positives = 168/313 (53%), Gaps = 22/313 (7%)
Query: 82 FYRDSCPQAEGTIRAMVRYLHKSRSDVAPALLRLVFHDCFIEGCDASILLDDAEGVDSEK 141
FY +SCP +R + +S +A ++LRL FHDCF+ GCDASILLD+ +EK
Sbjct: 6 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 65
Query: 142 KSPPN-ESLKGYDVINIIKEELEEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKD 200
+ N S +G+ VI+ +K +E CP VSCAD+L +AA++ V LAGGP + + GR+D
Sbjct: 66 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRD 125
Query: 201 SRLAFADIATLELPSPNADLSETLASFASRGFDL-RETVTLLGAHSIGVIHCKFFNNRLH 259
S AF D+A LP+P L + SF + G + + V L G H+ G C+F +RL+
Sbjct: 126 SLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLY 185
Query: 260 NFGRSNEPDPSLDPDFLNLLRSKCRNIXXXXXXXXXXYALLASTFDEPGINVTYDGHQGG 319
NF + PDP+L+ +L LR C AL+ P I
Sbjct: 186 NFSNTGLPDPTLNTTYLQTLRGLC-------PLNGNLSALVDFDLRTPTI---------- 228
Query: 320 FGTVYYRSLLQNRGVLYADQQLMA---GEETGIWVRAYASDVSLFRRDFALAMMKLSNLR 376
F YY +L + +G++ +DQ+L + +T VR++A+ F F AM ++ N+
Sbjct: 229 FDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNIT 288
Query: 377 VLTGPMGQIRLNC 389
LTG GQIRLNC
Sbjct: 289 PLTGTQGQIRLNC 301
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 195 bits (495), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 115/313 (36%), Positives = 167/313 (53%), Gaps = 22/313 (7%)
Query: 82 FYRDSCPQAEGTIRAMVRYLHKSRSDVAPALLRLVFHDCFIEGCDASILLDDAEGVDSEK 141
FY +SCP +R + +S +A ++LRL FHDCF+ GCDASILLD+ +EK
Sbjct: 7 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 66
Query: 142 KSPPN-ESLKGYDVINIIKEELEEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKD 200
+ N S +G+ VI+ +K +E CP VSCAD+L +AA++ V LAGGP + + GR+D
Sbjct: 67 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRD 126
Query: 201 SRLAFADIATLELPSPNADLSETLASFASRGFDL-RETVTLLGAHSIGVIHCKFFNNRLH 259
S AF D+A LP P L + SF + G + + V L G H+ G C+F +RL+
Sbjct: 127 SLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLY 186
Query: 260 NFGRSNEPDPSLDPDFLNLLRSKCRNIXXXXXXXXXXYALLASTFDEPGINVTYDGHQGG 319
NF + PDP+L+ +L LR C AL+ P I
Sbjct: 187 NFSNTGLPDPTLNTTYLQTLRGLC-------PLNGNLSALVDFDLRTPTI---------- 229
Query: 320 FGTVYYRSLLQNRGVLYADQQLMA---GEETGIWVRAYASDVSLFRRDFALAMMKLSNLR 376
F YY +L + +G++ +DQ+L + +T VR++A+ F F AM ++ N+
Sbjct: 230 FDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNIT 289
Query: 377 VLTGPMGQIRLNC 389
LTG GQIRLNC
Sbjct: 290 PLTGTQGQIRLNC 302
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 192 bits (489), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 114/313 (36%), Positives = 167/313 (53%), Gaps = 22/313 (7%)
Query: 82 FYRDSCPQAEGTIRAMVRYLHKSRSDVAPALLRLVFHDCFIEGCDASILLDDAEGVDSEK 141
FY +SCP +R + +S +A ++LRL F DCF+ GCDASILLD+ +EK
Sbjct: 7 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFVNGCDASILLDNTTSFRTEK 66
Query: 142 KSPPN-ESLKGYDVINIIKEELEEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKD 200
+ N S +G+ VI+ +K +E CP VSCAD+L +AA++ V LAGGP + + GR+D
Sbjct: 67 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRD 126
Query: 201 SRLAFADIATLELPSPNADLSETLASFASRGFDL-RETVTLLGAHSIGVIHCKFFNNRLH 259
S AF D+A LP+P L + SF + G + + V L G H+ G C+F +RL+
Sbjct: 127 SLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLY 186
Query: 260 NFGRSNEPDPSLDPDFLNLLRSKCRNIXXXXXXXXXXYALLASTFDEPGINVTYDGHQGG 319
NF + PDP+L+ +L LR C AL+ P I
Sbjct: 187 NFSNTGLPDPTLNTTYLQTLRGLC-------PLNGNLSALVDFDLRTPTI---------- 229
Query: 320 FGTVYYRSLLQNRGVLYADQQLMA---GEETGIWVRAYASDVSLFRRDFALAMMKLSNLR 376
F YY +L + +G++ +DQ+L + +T VR++A+ F F AM ++ N+
Sbjct: 230 FDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNIT 289
Query: 377 VLTGPMGQIRLNC 389
LTG GQIRLNC
Sbjct: 290 PLTGTQGQIRLNC 302
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 192 bits (488), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 114/313 (36%), Positives = 167/313 (53%), Gaps = 22/313 (7%)
Query: 82 FYRDSCPQAEGTIRAMVRYLHKSRSDVAPALLRLVFHDCFIEGCDASILLDDAEGVDSEK 141
FY +SCP +R + +S +A ++LRL FHDCF+ GCDASILLD+ +EK
Sbjct: 7 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEK 66
Query: 142 KSPPN-ESLKGYDVINIIKEELEEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKD 200
+ N S +G+ VI+ +K +E CP VSCAD+L +AA++ V LAGGP + + GR+D
Sbjct: 67 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRD 126
Query: 201 SRLAFADIATLELPSPNADLSETLASFASRGFDL-RETVTLLGAHSIGVIHCKFFNNRLH 259
S AF D+A LP+P L + SF + G + + V L G H+ G C+ +RL+
Sbjct: 127 SLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRSIMDRLY 186
Query: 260 NFGRSNEPDPSLDPDFLNLLRSKCRNIXXXXXXXXXXYALLASTFDEPGINVTYDGHQGG 319
NF + PDP+L+ +L LR C AL+ P I
Sbjct: 187 NFSNTGLPDPTLNTTYLQTLRGLC-------PLNGNLSALVDFDLRTPTI---------- 229
Query: 320 FGTVYYRSLLQNRGVLYADQQLMA---GEETGIWVRAYASDVSLFRRDFALAMMKLSNLR 376
F YY +L + +G++ +DQ+L + +T VR++A+ F F AM ++ N+
Sbjct: 230 FDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNIT 289
Query: 377 VLTGPMGQIRLNC 389
LTG GQIRLNC
Sbjct: 290 PLTGTQGQIRLNC 302
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 190 bits (482), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 113/313 (36%), Positives = 166/313 (53%), Gaps = 22/313 (7%)
Query: 82 FYRDSCPQAEGTIRAMVRYLHKSRSDVAPALLRLVFHDCFIEGCDASILLDDAEGVDSEK 141
FY +SCP +R + +S +A ++L L F DCF+ GCDASILLD+ +EK
Sbjct: 6 FYDNSCPNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFVNGCDASILLDNTTSFRTEK 65
Query: 142 KSPPN-ESLKGYDVINIIKEELEEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKD 200
+ N S +G+ VI+ +K +E CP VSCAD+L +AA++ V LAGGP + + GR+D
Sbjct: 66 DAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRD 125
Query: 201 SRLAFADIATLELPSPNADLSETLASFASRGFDL-RETVTLLGAHSIGVIHCKFFNNRLH 259
S AF D+A LP+P L + SF + G + + V L G H+ G C+F +RL+
Sbjct: 126 SLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLY 185
Query: 260 NFGRSNEPDPSLDPDFLNLLRSKCRNIXXXXXXXXXXYALLASTFDEPGINVTYDGHQGG 319
NF + PDP+L+ +L LR C AL+ P I
Sbjct: 186 NFSNTGLPDPTLNTTYLQTLRGLC-------PLNGNLSALVDFDLRTPTI---------- 228
Query: 320 FGTVYYRSLLQNRGVLYADQQLMA---GEETGIWVRAYASDVSLFRRDFALAMMKLSNLR 376
F YY +L + +G++ +DQ+L + +T VR++A+ F F AM ++ N+
Sbjct: 229 FDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNIT 288
Query: 377 VLTGPMGQIRLNC 389
LTG GQIRLNC
Sbjct: 289 PLTGTQGQIRLNC 301
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 185 bits (470), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 116/318 (36%), Positives = 171/318 (53%), Gaps = 29/318 (9%)
Query: 78 MEYDFYRDSCPQAEGTIRAMVRYLHKSRSDVAPALLRLVFHDCFIEGCDASILLDDAEGV 137
+ +DFY +CP+AE +R V+ + +A LLRL FHDCF++GCDAS+LLD +
Sbjct: 9 LSFDFYWQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASVLLDGSATG 68
Query: 138 DSEKKSPPNESLK--GYDVINIIKEELEEICPG-VVSCADILALAAREGVVLAGGPFYPL 194
E+++PPN +L+ + +N I++ LE C G VVSC+DILALAAR+ VV++GGP Y +
Sbjct: 69 PGEQQAPPNLTLRPSAFKAVNDIRDRLERECRGAVVSCSDILALAARDSVVVSGGPDYRV 128
Query: 195 YTGRKDSRLAFADIATL--ELPSPNADLSETLASFASRGFDLRETVTLLGAHSIGVIHCK 252
GR+DSR +FA + +LP P++++ LA G D + VT+ G H+IG+ HC
Sbjct: 129 PLGRRDSR-SFASTQDVLSDLPGPSSNVQSLLALLGRLGLDATDLVTISGGHTIGLAHCS 187
Query: 253 FFNNRLHNFGRSNEPDPSLDPDFLNLLRSKCRNIXXXXXXXXXXYALLASTFDEPGINVT 312
F +RL F R PDP++ P FL+ L+ C + D NV
Sbjct: 188 SFEDRL--FPR---PDPTISPTFLSRLKRTC----------PAKGTDRRTVLDVRTPNV- 231
Query: 313 YDGHQGGFGTVYYRSLLQNRGVLYADQQLMAGEETGIWVRAYASDVSLFRRDFALAMMKL 372
F YY L+ G+ +DQ L T V +A F F +++ K+
Sbjct: 232 -------FDNKYYIDLVNREGLFVSDQDLFTNAITRPIVERFAQSQQDFFEQFGVSIGKM 284
Query: 373 SNLRVLTGPMGQIRLNCS 390
+RV T G++R NCS
Sbjct: 285 GQMRVRTSDQGEVRRNCS 302
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 76/169 (44%), Gaps = 20/169 (11%)
Query: 94 IRAMVRYLHKSRSDVAPALLRLVFH-----DCFIEGCDASILLDDAEGVDSEKKSPPNES 148
+RA + + + ++ P+L+RL +H DCF + D + S + P E
Sbjct: 11 LRADIEDMISEKLELGPSLIRLAWHEAASYDCFKK--------DGSPNSASMRFKP--EC 60
Query: 149 L----KGYDVINIIKEELEEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLA 204
L KG D+ E L++ P + S AD+ LAA + GGP P GR D++
Sbjct: 61 LYAGNKGLDIPRKALETLKKKYPQI-SYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDG 119
Query: 205 FADIATLELPSPNADLSETLASFASRGFDLRETVTLLGAHSIGVIHCKF 253
LP + S F GF+ +ETV L+GAH+ G H +F
Sbjct: 120 SVCGPDGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGECHIEF 168
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 76/169 (44%), Gaps = 20/169 (11%)
Query: 94 IRAMVRYLHKSRSDVAPALLRLVFH-----DCFIEGCDASILLDDAEGVDSEKKSPPNES 148
+RA + + + ++ P+L+RL +H DCF + D + S + P E
Sbjct: 12 LRADIEDMISEKLELGPSLIRLAWHEAASYDCFKK--------DGSPNSASMRFKP--EC 61
Query: 149 L----KGYDVINIIKEELEEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLA 204
L KG D+ E L++ P + S AD+ LAA + GGP P GR D++
Sbjct: 62 LYAGNKGLDIPRKALETLKKKYPQI-SYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDG 120
Query: 205 FADIATLELPSPNADLSETLASFASRGFDLRETVTLLGAHSIGVIHCKF 253
LP + S F GF+ +ETV L+GAH+ G H +F
Sbjct: 121 SVCGPDGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGETHIEF 169
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 76/169 (44%), Gaps = 20/169 (11%)
Query: 94 IRAMVRYLHKSRSDVAPALLRLVFH-----DCFIEGCDASILLDDAEGVDSEKKSPPNES 148
+RA + + + ++ P+L+RL +H DCF + D + S + P E
Sbjct: 12 LRADIEDMISEKLELGPSLIRLAWHEAASYDCFKK--------DGSPNSASMRFKP--EC 61
Query: 149 L----KGYDVINIIKEELEEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLA 204
L KG D+ E L++ P + S AD+ LAA + GGP P GR D++
Sbjct: 62 LYAGNKGLDIPRKALETLKKKYPQI-SYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDG 120
Query: 205 FADIATLELPSPNADLSETLASFASRGFDLRETVTLLGAHSIGVIHCKF 253
LP + S F GF+ +ETV L+GAH+ G H +F
Sbjct: 121 SVCGPDGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGECHIEF 169
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 110/302 (36%), Gaps = 72/302 (23%)
Query: 110 PALLRLVFHDC--FIEGCDASILLDDAEG---VDSEKKSPPNESLKGYDVINIIKEELEE 164
P ++RL +HD + + + A G D E K N L + +N++K ++
Sbjct: 26 PIMVRLGWHDAGTYNKNIEEWPQRGGANGSLRFDVELKHGANAGL--VNALNLLKPIKDK 83
Query: 165 ICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKD----------SRLAFADIATLELP 214
V+ AD+ LA+ + AGGP P+ GR D RL A P
Sbjct: 84 YS--GVTYADLFQLASATAIEEAGGPKIPMKYGRVDVTEPEQCPEEGRLPDAGP-----P 136
Query: 215 SPNADLSETLASFASRGFDLRETVTLLGAHSIGVIHCKFFNNRLHNFGRSNEPDPSLDPD 274
SP L + F G + +E V L GAH++ GRS PD
Sbjct: 137 SPAQHLRDV---FYRMGLNDKEIVALSGAHTL---------------GRSR-------PD 171
Query: 275 FLNLLRSKCRNIXXXXXXXXXXYALLASTFDEPGI--NVTYDGHQGGFGTVYYRSLLQNR 332
+ + + T D PG ++ F Y++ + + R
Sbjct: 172 RSGWGKPETK-----------------YTKDGPGAPGGQSWTAQWLKFDNSYFKDIKERR 214
Query: 333 G----VLYADQQLMAGEETGIWVRAYASDVSLFRRDFALAMMKLSNLRVLTGPMGQIRLN 388
VL D L ++ YA+D F +D+A A KLSNL GP L
Sbjct: 215 DEDLLVLPTDAALFEDPSFKVYAEKYAADPEAFFKDYAEAHAKLSNLGAKFGPAEGFSLE 274
Query: 389 CS 390
S
Sbjct: 275 GS 276
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 73/187 (39%), Gaps = 27/187 (14%)
Query: 72 GEPYRSMEYDFYRDSCPQAEGTIRAMVRYLHKSRSDVAPALLRLVFHDCFIEGCDASILL 131
G+ Y ++ D Y+ + +A+ +R + + AP +LRL +H D+
Sbjct: 1 GKSYPTVSPD-YQKAIEKAKRKLRGFI-----AEKKCAPLILRLAWHSAGT--FDSKTKT 52
Query: 132 DDAEGVDSEKKSPPNESLKGYDVINIIKEELEEICPGVVSCADILALAAREGVVLAGGPF 191
G + + + G D+ + E ++E P +VS AD LA V + GGP
Sbjct: 53 GGPFGTIKHQAELAHGANNGLDIAVRLLEPIKEQFP-IVSYADFYQLAGVVAVEITGGPE 111
Query: 192 YPLYTGRKDSRLAFADIATLELPSPNADLSETLASF--------ASRGFDLRETVTLLGA 243
P + GR+D P P L + + G ++ V L G
Sbjct: 112 VPFHPGREDK----------PEPPPEGRLPDATKGSDHLRDVFGKAMGLSDQDIVALSGG 161
Query: 244 HSIGVIH 250
H+IG H
Sbjct: 162 HTIGAAH 168
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 56/150 (37%), Gaps = 15/150 (10%)
Query: 109 APALLRLVFHDCFIEGC-DASILLDDAEG----VDSEKKSPPNESLK-GYDVINIIKEEL 162
P L+RL FH I G D + G E P N L+ G+ + I +E
Sbjct: 45 GPVLVRLAFH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF 101
Query: 163 EEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSE 222
I S D+ +L V GP P GR D+ LP + D
Sbjct: 102 PWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED-TTPDNGRLPDADKDAGY 155
Query: 223 TLASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G H K
Sbjct: 156 VRTFFQRLNMNDREVVALMGAHALGKTHLK 185
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 56/150 (37%), Gaps = 15/150 (10%)
Query: 109 APALLRLVFHDCFIEGC-DASILLDDAEG----VDSEKKSPPNESLK-GYDVINIIKEEL 162
P L+RL +H I G D + G E P N L+ G+ + I +E
Sbjct: 45 GPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF 101
Query: 163 EEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSE 222
I S D+ +L V GP P GR D+ LP + D
Sbjct: 102 PWI-----SSGDLFSLGGVTAVQEMQGPKIPWRAGRVDTPED-TTPDNGRLPDADKDAGY 155
Query: 223 TLASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G H K
Sbjct: 156 VRTFFQRLNMNDREVVALMGAHALGKTHLK 185
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 56/148 (37%), Gaps = 11/148 (7%)
Query: 109 APALLRLVFHD--CFIEGCDASILLDDAEGVDSEKKSPPNESLK-GYDVINIIKEELEEI 165
P L+RL +H + + + E P N L+ G+ + I +E I
Sbjct: 43 GPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFPWI 102
Query: 166 CPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDS-RLAFADIATLELPSPNADLSETL 224
S D+ +L V GP P GR D+ D L +AD T
Sbjct: 103 -----SSGDLFSLGGVTAVQEMQGPKIPWRAGRVDTPEDTTPDNGRLPDADKDADYVRTF 157
Query: 225 ASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G H K
Sbjct: 158 --FQRLNMNDREVVALMGAHALGKTHLK 183
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 56/148 (37%), Gaps = 11/148 (7%)
Query: 109 APALLRLVFHD--CFIEGCDASILLDDAEGVDSEKKSPPNESLK-GYDVINIIKEELEEI 165
P L+RL +H + + + E P N L+ G+ + I +E I
Sbjct: 43 GPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFPWI 102
Query: 166 CPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDS-RLAFADIATLELPSPNADLSETL 224
S D+ +L V GP P GR D+ D L +AD T
Sbjct: 103 -----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTF 157
Query: 225 ASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G H K
Sbjct: 158 --FQRLNMNDREVVALMGAHTLGKTHLK 183
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 56/148 (37%), Gaps = 11/148 (7%)
Query: 109 APALLRLVFHD--CFIEGCDASILLDDAEGVDSEKKSPPNESLK-GYDVINIIKEELEEI 165
P L+RL +H + + + E P N L+ G+ + I +E I
Sbjct: 43 GPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFPWI 102
Query: 166 CPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDS-RLAFADIATLELPSPNADLSETL 224
S D+ +L V GP P GR D+ D L +AD T
Sbjct: 103 -----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTF 157
Query: 225 ASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G H K
Sbjct: 158 --FQRLNMNDREVVALMGAHTLGKTHLK 183
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 56/148 (37%), Gaps = 11/148 (7%)
Query: 109 APALLRLVFHD--CFIEGCDASILLDDAEGVDSEKKSPPNESLK-GYDVINIIKEELEEI 165
P L+RL +H + + + E P N L+ G+ + I +E I
Sbjct: 43 GPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFPWI 102
Query: 166 CPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDS-RLAFADIATLELPSPNADLSETL 224
S D+ +L V GP P GR D+ D L +AD T
Sbjct: 103 -----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTF 157
Query: 225 ASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G H K
Sbjct: 158 --FQRLNMNDREVVALMGAHTLGKTHLK 183
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 56/150 (37%), Gaps = 15/150 (10%)
Query: 109 APALLRLVFHDCFIEGC-DASILLDDAEG----VDSEKKSPPNESLK-GYDVINIIKEEL 162
P L+RL +H I G D + G E P N L+ G+ + I +E
Sbjct: 40 GPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF 96
Query: 163 EEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSE 222
I S D+ +L V GP P GR D+ LP + D
Sbjct: 97 PWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED-TTPDNGRLPDADKDAGY 150
Query: 223 TLASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G H K
Sbjct: 151 VRTFFQRLNMNDREVVALMGAHALGKTHLK 180
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 56/148 (37%), Gaps = 11/148 (7%)
Query: 109 APALLRLVFHD--CFIEGCDASILLDDAEGVDSEKKSPPNESLK-GYDVINIIKEELEEI 165
P L+RL +H + + + E P N L+ G+ + I +E I
Sbjct: 43 GPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFPWI 102
Query: 166 CPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDS-RLAFADIATLELPSPNADLSETL 224
S D+ +L V GP P GR D+ D L +AD T
Sbjct: 103 -----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTF 157
Query: 225 ASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G H K
Sbjct: 158 --FQRLNMNDREVVALMGAHTLGKTHLK 183
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 56/150 (37%), Gaps = 15/150 (10%)
Query: 109 APALLRLVFHDCFIEGC-DASILLDDAEG----VDSEKKSPPNESLK-GYDVINIIKEEL 162
P L+RL +H I G D + G E P N L+ G+ + I +E
Sbjct: 40 GPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF 96
Query: 163 EEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSE 222
I S D+ +L V GP P GR D+ LP + D
Sbjct: 97 PWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED-TTPDNGRLPDADKDAGY 150
Query: 223 TLASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G H K
Sbjct: 151 VRTFFQRLNMNDREVVALMGAHALGKTHLK 180
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 56/148 (37%), Gaps = 11/148 (7%)
Query: 109 APALLRLVFHD--CFIEGCDASILLDDAEGVDSEKKSPPNESLK-GYDVINIIKEELEEI 165
P L+RL +H + + + E P N L+ G+ + I +E I
Sbjct: 43 GPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFPWI 102
Query: 166 CPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDS-RLAFADIATLELPSPNADLSETL 224
S D+ +L V GP P GR D+ D L +AD T
Sbjct: 103 -----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTF 157
Query: 225 ASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G H K
Sbjct: 158 --FQRLNMNDREVVALMGAHALGKTHLK 183
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 56/148 (37%), Gaps = 11/148 (7%)
Query: 109 APALLRLVFHD--CFIEGCDASILLDDAEGVDSEKKSPPNESLK-GYDVINIIKEELEEI 165
P L+RL +H + + + E P N L+ G+ + I +E I
Sbjct: 45 GPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFPWI 104
Query: 166 CPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDS-RLAFADIATLELPSPNADLSETL 224
S D+ +L V GP P GR D+ D L +AD T
Sbjct: 105 -----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTF 159
Query: 225 ASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G H K
Sbjct: 160 --FQRLNMNDREVVALMGAHALGKTHLK 185
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 56/150 (37%), Gaps = 15/150 (10%)
Query: 109 APALLRLVFHDCFIEGC-DASILLDDAEG----VDSEKKSPPNESLK-GYDVINIIKEEL 162
P L+RL +H I G D + G E P N L+ G+ + I +E
Sbjct: 43 GPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF 99
Query: 163 EEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSE 222
I S D+ +L V GP P GR D+ LP + D
Sbjct: 100 PWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED-TTPDNGRLPDADKDAGY 153
Query: 223 TLASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G H K
Sbjct: 154 VRTFFQRLNMNDREVVALMGAHALGKTHLK 183
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 56/150 (37%), Gaps = 15/150 (10%)
Query: 109 APALLRLVFHDCFIEGC-DASILLDDAEG----VDSEKKSPPNESLK-GYDVINIIKEEL 162
P L+RL +H I G D + G E P N L+ G+ + I +E
Sbjct: 46 GPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF 102
Query: 163 EEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSE 222
I S D+ +L V GP P GR D+ LP + D
Sbjct: 103 PWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED-TTPDNGRLPDADKDAGY 156
Query: 223 TLASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G H K
Sbjct: 157 VRTFFQRLNMNDREVVALMGAHALGKTHLK 186
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 56/150 (37%), Gaps = 15/150 (10%)
Query: 109 APALLRLVFHDCFIEGC-DASILLDDAEG----VDSEKKSPPNESLK-GYDVINIIKEEL 162
P L+RL +H I G D + G E P N L+ G+ + I +E
Sbjct: 40 GPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF 96
Query: 163 EEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSE 222
I S D+ +L V GP P GR D+ LP + D
Sbjct: 97 PWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED-TTPDNGRLPDADKDAGY 150
Query: 223 TLASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G H K
Sbjct: 151 VRTFFQRLNMNDREVVALMGAHALGKTHLK 180
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 56/148 (37%), Gaps = 11/148 (7%)
Query: 109 APALLRLVFHD--CFIEGCDASILLDDAEGVDSEKKSPPNESLK-GYDVINIIKEELEEI 165
P L+RL +H + + + E P N L+ G+ + I +E I
Sbjct: 43 GPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFPWI 102
Query: 166 CPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDS-RLAFADIATLELPSPNADLSETL 224
S D+ +L V GP P GR D+ D L +AD T
Sbjct: 103 -----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTF 157
Query: 225 ASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G H K
Sbjct: 158 --FQRLNMNDREVVALMGAHALGKTHLK 183
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 56/150 (37%), Gaps = 15/150 (10%)
Query: 109 APALLRLVFHDCFIEGC-DASILLDDAEG----VDSEKKSPPNESLK-GYDVINIIKEEL 162
P L+RL +H I G D + G E P N L+ G+ + I +E
Sbjct: 43 GPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF 99
Query: 163 EEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSE 222
I S D+ +L V GP P GR D+ LP + D
Sbjct: 100 PWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED-TTPDNGRLPDADKDAGY 153
Query: 223 TLASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G H K
Sbjct: 154 VRTFFQRLNMNDREVVALMGAHALGKTHLK 183
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 56/150 (37%), Gaps = 15/150 (10%)
Query: 109 APALLRLVFHDCFIEGC-DASILLDDAEG----VDSEKKSPPNESLK-GYDVINIIKEEL 162
P L+RL +H I G D + G E P N L+ G+ + I +E
Sbjct: 43 GPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF 99
Query: 163 EEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSE 222
I S D+ +L V GP P GR D+ LP + D
Sbjct: 100 PWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED-TTPDNGRLPDADKDAGY 153
Query: 223 TLASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G H K
Sbjct: 154 VRTFFQRLNMNDREVVALMGAHALGKTHLK 183
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 56/148 (37%), Gaps = 11/148 (7%)
Query: 109 APALLRLVFHD--CFIEGCDASILLDDAEGVDSEKKSPPNESLK-GYDVINIIKEELEEI 165
P L+RL +H + + + E P N L+ G+ + I +E I
Sbjct: 43 GPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFPWI 102
Query: 166 CPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDS-RLAFADIATLELPSPNADLSETL 224
S D+ +L V GP P GR D+ D L +AD T
Sbjct: 103 -----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTF 157
Query: 225 ASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G H K
Sbjct: 158 --FQRLNMNDREVVALMGAHALGKTHLK 183
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 56/148 (37%), Gaps = 11/148 (7%)
Query: 109 APALLRLVFHD--CFIEGCDASILLDDAEGVDSEKKSPPNESLK-GYDVINIIKEELEEI 165
P L+RL +H + + + E P N L+ G+ + I +E I
Sbjct: 45 GPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFPWI 104
Query: 166 CPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDS-RLAFADIATLELPSPNADLSETL 224
S D+ +L V GP P GR D+ D L +AD T
Sbjct: 105 -----SSGDLFSLGGVTAVQEWQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTF 159
Query: 225 ASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G H K
Sbjct: 160 --FQRLNMNDREVVALMGAHALGKTHLK 185
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 56/150 (37%), Gaps = 15/150 (10%)
Query: 109 APALLRLVFHDCFIEGC-DASILLDDAEG----VDSEKKSPPNESLK-GYDVINIIKEEL 162
P L+RL +H I G D + G E P N L+ G+ + I +E
Sbjct: 40 GPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF 96
Query: 163 EEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSE 222
I S D+ +L V GP P GR D+ LP + D
Sbjct: 97 PWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED-TTPDNGRLPDADKDAGY 150
Query: 223 TLASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G H K
Sbjct: 151 VRTFFQRLNMNDREVVALMGAHALGKTHLK 180
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 56/150 (37%), Gaps = 15/150 (10%)
Query: 109 APALLRLVFHDCFIEGC-DASILLDDAEG----VDSEKKSPPNESLK-GYDVINIIKEEL 162
P L+RL +H I G D + G E P N L+ G+ + I +E
Sbjct: 40 GPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF 96
Query: 163 EEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSE 222
I S D+ +L V GP P GR D+ LP + D
Sbjct: 97 PWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED-TTPDNGRLPDADKDAGY 150
Query: 223 TLASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G H K
Sbjct: 151 VRTFFQRLNMNDREVVALMGAHALGKTHLK 180
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 56/150 (37%), Gaps = 15/150 (10%)
Query: 109 APALLRLVFHDCFIEGC-DASILLDDAEG----VDSEKKSPPNESLK-GYDVINIIKEEL 162
P L+RL +H I G D + G E P N L+ G+ + I +E
Sbjct: 43 GPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF 99
Query: 163 EEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSE 222
I S D+ +L V GP P GR D+ LP + D
Sbjct: 100 PWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED-TTPDNGRLPDADKDAGY 153
Query: 223 TLASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G H K
Sbjct: 154 VRTFFQRLNMNDREVVALMGAHALGKTHLK 183
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 56/148 (37%), Gaps = 11/148 (7%)
Query: 109 APALLRLVFHD--CFIEGCDASILLDDAEGVDSEKKSPPNESLK-GYDVINIIKEELEEI 165
P L+RL +H + + + E P N L+ G+ + I +E I
Sbjct: 45 GPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFPWI 104
Query: 166 CPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDS-RLAFADIATLELPSPNADLSETL 224
S D+ +L V GP P GR D+ D L +AD T
Sbjct: 105 -----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTF 159
Query: 225 ASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G H K
Sbjct: 160 --FQRLNMNDREVVALMGAHALGKTHLK 185
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 56/150 (37%), Gaps = 15/150 (10%)
Query: 109 APALLRLVFHDCFIEGC-DASILLDDAEG----VDSEKKSPPNESLK-GYDVINIIKEEL 162
P L+RL +H I G D + G E P N L+ G+ + I +E
Sbjct: 41 GPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF 97
Query: 163 EEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSE 222
I S D+ +L V GP P GR D+ LP + D
Sbjct: 98 PWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED-TTPDNGRLPDADKDAGY 151
Query: 223 TLASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G H K
Sbjct: 152 VRTFFQRLNMNDREVVALMGAHALGKTHLK 181
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 56/150 (37%), Gaps = 15/150 (10%)
Query: 109 APALLRLVFHDCFIEGC-DASILLDDAEG----VDSEKKSPPNESLK-GYDVINIIKEEL 162
P L+RL +H I G D + G E P N L+ G+ + I +E
Sbjct: 45 GPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF 101
Query: 163 EEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSE 222
I S D+ +L V GP P GR D+ LP + D
Sbjct: 102 PWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED-TTPDNGRLPDADKDAGY 155
Query: 223 TLASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G H K
Sbjct: 156 VRTFFQRLNMNDREVVALMGAHALGKTHLK 185
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 56/148 (37%), Gaps = 11/148 (7%)
Query: 109 APALLRLVFHD--CFIEGCDASILLDDAEGVDSEKKSPPNESLK-GYDVINIIKEELEEI 165
P L+RL +H + + + E P N L+ G+ + I +E I
Sbjct: 40 GPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFPWI 99
Query: 166 CPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDS-RLAFADIATLELPSPNADLSETL 224
S D+ +L V GP P GR D+ D L +AD T
Sbjct: 100 -----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTF 154
Query: 225 ASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G H K
Sbjct: 155 --FQRLNMNDREVVALMGAHALGKTHLK 180
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 56/150 (37%), Gaps = 15/150 (10%)
Query: 109 APALLRLVFHDCFIEGC-DASILLDDAEG----VDSEKKSPPNESLK-GYDVINIIKEEL 162
P L+RL +H I G D + G E P N L+ G+ + I +E
Sbjct: 40 GPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF 96
Query: 163 EEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSE 222
I S D+ +L V GP P GR D+ LP + D
Sbjct: 97 PWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED-TTPDNGRLPDADKDAGY 150
Query: 223 TLASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G H K
Sbjct: 151 VRTFFQRLNMNDREVVALMGAHALGKTHLK 180
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 56/150 (37%), Gaps = 15/150 (10%)
Query: 109 APALLRLVFHDCFIEGC-DASILLDDAEG----VDSEKKSPPNESLK-GYDVINIIKEEL 162
P L+RL +H I G D + G E P N L+ G+ + I +E
Sbjct: 40 GPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF 96
Query: 163 EEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSE 222
I S D+ +L V GP P GR D+ LP + D
Sbjct: 97 PWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED-TTPDNGRLPDADKDAGY 150
Query: 223 TLASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G H K
Sbjct: 151 VRTFFQRLNMNDREVVALMGAHALGKTHLK 180
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 56/150 (37%), Gaps = 15/150 (10%)
Query: 109 APALLRLVFHDCFIEGC-DASILLDDAEG----VDSEKKSPPNESLK-GYDVINIIKEEL 162
P L+RL +H I G D + G E P N L+ G+ + I +E
Sbjct: 45 GPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF 101
Query: 163 EEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSE 222
I S D+ +L V GP P GR D+ LP + D
Sbjct: 102 PWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED-TTPDNGRLPDADKDAGY 155
Query: 223 TLASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G H K
Sbjct: 156 VRTFFQRLNMNDREVVALMGAHALGKTHLK 185
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 56/150 (37%), Gaps = 15/150 (10%)
Query: 109 APALLRLVFHDCFIEGC-DASILLDDAEG----VDSEKKSPPNESLK-GYDVINIIKEEL 162
P L+RL +H I G D + G E P N L+ G+ + I +E
Sbjct: 46 GPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF 102
Query: 163 EEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSE 222
I S D+ +L V GP P GR D+ LP + D
Sbjct: 103 PWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED-TTPDNGRLPDADKDAGY 156
Query: 223 TLASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G H K
Sbjct: 157 VRTFFQRLNMNDREVVALMGAHALGKTHLK 186
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 56/148 (37%), Gaps = 11/148 (7%)
Query: 109 APALLRLVFHD--CFIEGCDASILLDDAEGVDSEKKSPPNESLK-GYDVINIIKEELEEI 165
P L+RL +H + + + E P N L+ G+ + I +E I
Sbjct: 43 GPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFPWI 102
Query: 166 CPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDS-RLAFADIATLELPSPNADLSETL 224
S D+ +L V GP P GR D+ D L +AD T
Sbjct: 103 -----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTF 157
Query: 225 ASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G H K
Sbjct: 158 --FQRLNMNDREVVALMGAHALGKTHLK 183
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 56/150 (37%), Gaps = 15/150 (10%)
Query: 109 APALLRLVFHDCFIEGC-DASILLDDAEG----VDSEKKSPPNESLK-GYDVINIIKEEL 162
P L+RL +H I G D + G E P N L+ G+ + I +E
Sbjct: 40 GPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF 96
Query: 163 EEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSE 222
I S D+ +L V GP P GR D+ LP + D
Sbjct: 97 PWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED-TTPDNGRLPDADKDAGY 150
Query: 223 TLASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G H K
Sbjct: 151 VRTFFQRLNMNDREVVALMGAHALGKTHLK 180
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 56/148 (37%), Gaps = 11/148 (7%)
Query: 109 APALLRLVFHD--CFIEGCDASILLDDAEGVDSEKKSPPNESLK-GYDVINIIKEELEEI 165
P L+RL +H + + + E P N L+ G+ + I +E I
Sbjct: 42 GPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFPWI 101
Query: 166 CPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDS-RLAFADIATLELPSPNADLSETL 224
S D+ +L V GP P GR D+ D L +AD T
Sbjct: 102 -----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTF 156
Query: 225 ASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G H K
Sbjct: 157 --FQRLNMNDREVVALMGAHALGKTHLK 182
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 56/148 (37%), Gaps = 11/148 (7%)
Query: 109 APALLRLVFHD--CFIEGCDASILLDDAEGVDSEKKSPPNESLK-GYDVINIIKEELEEI 165
P L+RL +H + + + E P N L+ G+ + I +E I
Sbjct: 42 GPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFPWI 101
Query: 166 CPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDS-RLAFADIATLELPSPNADLSETL 224
S D+ +L V GP P GR D+ D L +AD T
Sbjct: 102 -----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTF 156
Query: 225 ASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G H K
Sbjct: 157 --FQRLNMNDREVVALMGAHALGKTHLK 182
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 56/150 (37%), Gaps = 15/150 (10%)
Query: 109 APALLRLVFHDCFIEGC-DASILLDDAEG----VDSEKKSPPNESLK-GYDVINIIKEEL 162
P L+RL +H I G D + G E P N L+ G+ + I +E
Sbjct: 45 GPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF 101
Query: 163 EEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSE 222
I S D+ +L V GP P GR D+ LP + D
Sbjct: 102 PWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED-TTPDNGRLPDADKDAGY 155
Query: 223 TLASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G H K
Sbjct: 156 VRTFFQRLNMNDREVVALMGAHALGKTHLK 185
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 59/153 (38%), Gaps = 21/153 (13%)
Query: 109 APALLRLVFHDCFIEGC-DASILLDDAEG----VDSEKKSPPNESLK-GYDVINIIKEEL 162
P L+RL +H I G D + G E P N L+ G+ + I +E
Sbjct: 46 GPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF 102
Query: 163 EEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLAFADIATLE---LPSPNAD 219
I S D+ +L V GP P GR D+ + T + LP + D
Sbjct: 103 PWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT----PEDTTPDNGRLPDADKD 153
Query: 220 LSETLASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G H K
Sbjct: 154 AGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 186
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 56/150 (37%), Gaps = 15/150 (10%)
Query: 109 APALLRLVFHDCFIEGC-DASILLDDAEG----VDSEKKSPPNESLK-GYDVINIIKEEL 162
P L+RL +H I G D + G E P N L+ G+ + I +E
Sbjct: 41 GPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF 97
Query: 163 EEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSE 222
I S D+ +L V GP P GR D+ LP + D
Sbjct: 98 PWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED-TTPDNGRLPDADKDAGY 151
Query: 223 TLASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G H K
Sbjct: 152 VRTFFQRLNMNDREVVALMGAHALGKTHLK 181
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 56/150 (37%), Gaps = 15/150 (10%)
Query: 109 APALLRLVFHDCFIEGC-DASILLDDAEG----VDSEKKSPPNESLK-GYDVINIIKEEL 162
P L+RL +H I G D + G E P N L+ G+ + I +E
Sbjct: 45 GPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF 101
Query: 163 EEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSE 222
I S D+ +L V GP P GR D+ LP + D
Sbjct: 102 PWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED-TTPDNGRLPDADKDAGY 155
Query: 223 TLASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G H K
Sbjct: 156 VRTFFQRLNMNDREVVALMGAHALGKTHLK 185
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 59/153 (38%), Gaps = 21/153 (13%)
Query: 109 APALLRLVFHDCFIEGC-DASILLDDAEG----VDSEKKSPPNESLK-GYDVINIIKEEL 162
P L+RL +H I G D + G E P N L+ G+ + I +E
Sbjct: 46 GPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF 102
Query: 163 EEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLAFADIATLE---LPSPNAD 219
I S D+ +L V GP P GR D+ + T + LP + D
Sbjct: 103 PWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT----PEDTTPDNGRLPDADKD 153
Query: 220 LSETLASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G H K
Sbjct: 154 AGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 186
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 56/150 (37%), Gaps = 15/150 (10%)
Query: 109 APALLRLVFHDCFIEGC-DASILLDDAEG----VDSEKKSPPNESLK-GYDVINIIKEEL 162
P L+RL +H I G D + G E P N L+ G+ + I +E
Sbjct: 43 GPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF 99
Query: 163 EEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSE 222
I S D+ +L V GP P GR D+ LP + D
Sbjct: 100 PWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED-TTPDNGRLPDADKDAGY 153
Query: 223 TLASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G H K
Sbjct: 154 VRTFFQRLNMNDREVVALMGAHALGKTHLK 183
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 56/150 (37%), Gaps = 15/150 (10%)
Query: 109 APALLRLVFHDCFIEGC-DASILLDDAEG----VDSEKKSPPNESLK-GYDVINIIKEEL 162
P L+RL +H I G D + G E P N L+ G+ + I +E
Sbjct: 45 GPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF 101
Query: 163 EEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSE 222
I S D+ +L V GP P GR D+ LP + D
Sbjct: 102 PWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED-TTPDNGRLPDADKDAGY 155
Query: 223 TLASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G H K
Sbjct: 156 VRTFFQRLNMNDREVVALMGAHALGKTHLK 185
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 56/148 (37%), Gaps = 11/148 (7%)
Query: 109 APALLRLVFHD--CFIEGCDASILLDDAEGVDSEKKSPPNESLK-GYDVINIIKEELEEI 165
P L+RL +H + + + E P N L+ G+ + I +E I
Sbjct: 43 GPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFPWI 102
Query: 166 CPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDS-RLAFADIATLELPSPNADLSETL 224
S D+ +L V GP P GR D+ D L +AD T
Sbjct: 103 -----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTF 157
Query: 225 ASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G H K
Sbjct: 158 --FQRLNMNDREVVALMGAHALGKTHLK 183
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 56/148 (37%), Gaps = 11/148 (7%)
Query: 109 APALLRLVFHD--CFIEGCDASILLDDAEGVDSEKKSPPNESLK-GYDVINIIKEELEEI 165
P L+RL +H + + + E P N L+ G+ + I +E I
Sbjct: 43 GPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFPWI 102
Query: 166 CPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDS-RLAFADIATLELPSPNADLSETL 224
S D+ +L V GP P GR D+ D L +AD T
Sbjct: 103 -----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTF 157
Query: 225 ASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G H K
Sbjct: 158 --FQRLNMNDREVVALMGAHALGKTHLK 183
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 56/150 (37%), Gaps = 15/150 (10%)
Query: 109 APALLRLVFHDCFIEGC-DASILLDDAEG----VDSEKKSPPNESLK-GYDVINIIKEEL 162
P L+RL +H I G D + G E P N L+ G+ + I +E
Sbjct: 40 GPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF 96
Query: 163 EEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSE 222
I S D+ +L V GP P GR D+ LP + D
Sbjct: 97 PWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED-TTPDNGRLPDADKDAGY 150
Query: 223 TLASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G H K
Sbjct: 151 VRTFFQRLNMNDREVVALMGAHALGKTHLK 180
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 56/148 (37%), Gaps = 11/148 (7%)
Query: 109 APALLRLVFHD--CFIEGCDASILLDDAEGVDSEKKSPPNESLK-GYDVINIIKEELEEI 165
P L+RL +H + + + E P N L+ G+ + I +E I
Sbjct: 36 GPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFPWI 95
Query: 166 CPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDS-RLAFADIATLELPSPNADLSETL 224
S D+ +L V GP P GR D+ D L +AD T
Sbjct: 96 -----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTF 150
Query: 225 ASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G H K
Sbjct: 151 --FQRLNMNDREVVALMGAHALGKTHLK 176
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 56/150 (37%), Gaps = 15/150 (10%)
Query: 109 APALLRLVFHDCFIEGC-DASILLDDAEG----VDSEKKSPPNESLK-GYDVINIIKEEL 162
P L+RL +H I G D + G E P N L+ G+ + I +E
Sbjct: 45 GPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF 101
Query: 163 EEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSE 222
I S D+ +L V GP P GR D+ LP + D
Sbjct: 102 PWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED-TTPDNGRLPDADKDAGY 155
Query: 223 TLASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G H K
Sbjct: 156 VRTFFQRLNMNDREVVALMGAHALGKTHLK 185
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 56/148 (37%), Gaps = 11/148 (7%)
Query: 109 APALLRLVFHD--CFIEGCDASILLDDAEGVDSEKKSPPNESLK-GYDVINIIKEELEEI 165
P L+RL +H + + + E P N L+ G+ + I +E I
Sbjct: 45 GPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPWNAGLQNGFKFLEPIHKEFPWI 104
Query: 166 CPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDS-RLAFADIATLELPSPNADLSETL 224
S D+ +L V GP P GR D+ D L +AD T
Sbjct: 105 -----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTF 159
Query: 225 ASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G H K
Sbjct: 160 --FQRLNMNDREVVALMGAHALGKTHLK 185
>pdb|3FM6|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 53/142 (37%), Gaps = 20/142 (14%)
Query: 113 LRLVFHDCFI-------EGCDASILLDDAEGVDSEKKSPPNESLKGYDVINIIKEELEEI 165
LRL FHD G D SI+ D E P N + I+ + +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDT----IETNFPANAGID-----EIVSAQKPFV 92
Query: 166 CPGVVSCADILALAAREGVV-LAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSETL 224
+S D + A GV GG P + GR D+ A D +P P + L
Sbjct: 93 AKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL---VPEPQDSVDSIL 149
Query: 225 ASFASRGFDLRETVTLLGAHSI 246
A GF E V LL +HSI
Sbjct: 150 ARMGDAGFSPVEVVWLLASHSI 171
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 59/153 (38%), Gaps = 21/153 (13%)
Query: 109 APALLRLVFHDCFIEGC-DASILLDDAEG----VDSEKKSPPNESLK-GYDVINIIKEEL 162
P L+RL +H I G D + G E P N L+ G+ + I +E
Sbjct: 43 GPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF 99
Query: 163 EEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLAFADIATLE---LPSPNAD 219
I S D+ +L V GP P GR D+ + T + LP + D
Sbjct: 100 PWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT----PEDTTPDNGRLPDMDKD 150
Query: 220 LSETLASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G H K
Sbjct: 151 AGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 183
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 59/153 (38%), Gaps = 21/153 (13%)
Query: 109 APALLRLVFHDCFIEGC-DASILLDDAEG----VDSEKKSPPNESLK-GYDVINIIKEEL 162
P L+RL +H I G D + G E P N L+ G+ + I +E
Sbjct: 43 GPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF 99
Query: 163 EEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLAFADIATLE---LPSPNAD 219
I S D+ +L V GP P GR D+ + T + LP + D
Sbjct: 100 PWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT----PEDTTPDNGRLPDYDKD 150
Query: 220 LSETLASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G H K
Sbjct: 151 AGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 183
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 46/116 (39%), Gaps = 9/116 (7%)
Query: 139 SEKKSPPNESLK-GYDVINIIKEELEEICPGVVSCADILALAAREGVVLAGGPFYPLYTG 197
E P N L+ G+ + I +E I S D+ +L V GP P G
Sbjct: 75 KEFNDPSNAGLQNGFKFLEPIHKEFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCG 129
Query: 198 RKDS-RLAFADIATLELPSPNADLSETLASFASRGFDLRETVTLLGAHSIGVIHCK 252
R D+ D L +AD T F + RE V L+GAH++G H K
Sbjct: 130 RVDTPEDTTPDNGRLPDADKDADYVRTF--FQRLNMNDREVVALMGAHALGKTHLK 183
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 47/118 (39%), Gaps = 13/118 (11%)
Query: 139 SEKKSPPNESLK-GYDVINIIKEELEEICPGVVSCADILALAAREGVVLAGGPFYPLYTG 197
E P N L+ G+ + I +E I S D+ +L V GP P G
Sbjct: 77 KEFNDPSNAGLQNGFKFLEPIHKEFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCG 131
Query: 198 RKDSRLAFADIATLE---LPSPNADLSETLASFASRGFDLRETVTLLGAHSIGVIHCK 252
R D+ + T + LP + D F + RE V L+GAH++G H K
Sbjct: 132 RVDT----PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 185
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 44/115 (38%), Gaps = 7/115 (6%)
Query: 139 SEKKSPPNESLK-GYDVINIIKEELEEICPGVVSCADILALAAREGVVLAGGPFYPLYTG 197
E P N L+ G+ + I +E I S D+ +L V GP P G
Sbjct: 75 KEFNDPSNAGLQNGFKFLEPIHKEFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCG 129
Query: 198 RKDSRLAFADIATLELPSPNADLSETLASFASRGFDLRETVTLLGAHSIGVIHCK 252
R D+ LP + D F + RE V L+GAH++G H K
Sbjct: 130 RVDTPED-TTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 183
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 44/115 (38%), Gaps = 7/115 (6%)
Query: 139 SEKKSPPNESLK-GYDVINIIKEELEEICPGVVSCADILALAAREGVVLAGGPFYPLYTG 197
E P N L+ G+ + I +E I S D+ +L V GP P G
Sbjct: 77 KEFNDPSNAGLQNGFKFLEPIHKEFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCG 131
Query: 198 RKDSRLAFADIATLELPSPNADLSETLASFASRGFDLRETVTLLGAHSIGVIHCK 252
R D+ LP + D F + RE V L+GAH++G H K
Sbjct: 132 RVDTPED-TTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 185
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 47/118 (39%), Gaps = 13/118 (11%)
Query: 139 SEKKSPPNESLK-GYDVINIIKEELEEICPGVVSCADILALAAREGVVLAGGPFYPLYTG 197
E P N L+ G+ + I +E I S D+ +L V GP P G
Sbjct: 77 KEFNDPSNAGLQNGFKFLEPIHKEFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCG 131
Query: 198 RKDSRLAFADIATLE---LPSPNADLSETLASFASRGFDLRETVTLLGAHSIGVIHCK 252
R D+ + T + LP + D F + RE V L+GAH++G H K
Sbjct: 132 RVDT----PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 185
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 44/115 (38%), Gaps = 7/115 (6%)
Query: 139 SEKKSPPNESLK-GYDVINIIKEELEEICPGVVSCADILALAAREGVVLAGGPFYPLYTG 197
E P N L+ G+ + I +E I S D+ +L V GP P G
Sbjct: 72 KEFNDPSNAGLQNGFKFLEPIHKEFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCG 126
Query: 198 RKDSRLAFADIATLELPSPNADLSETLASFASRGFDLRETVTLLGAHSIGVIHCK 252
R D+ LP + D F + RE V L+GAH++G H K
Sbjct: 127 RVDTPED-TTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 180
>pdb|3FMU|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 54/142 (38%), Gaps = 20/142 (14%)
Query: 113 LRLVFHDCFI-------EGCDASILLDDAEGVDSEKKSPPNESLKGYDVINIIKEELEEI 165
LRL FHD G D SI+ D E P N + I+ + +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDT----IETNFPANAGID-----EIVSAQKPFV 92
Query: 166 CPGVVSCADILALAAREGVV-LAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSETL 224
+S D + A GV GG P + GR D+ A D +P P + L
Sbjct: 93 AKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL---VPEPFDSVDSIL 149
Query: 225 ASFASRGFDLRETVTLLGAHSI 246
A GF E V+LL +HSI
Sbjct: 150 ARMGDAGFSPVEVVSLLASHSI 171
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 70/187 (37%), Gaps = 27/187 (14%)
Query: 72 GEPYRSMEYDFYRDSCPQAEGTIRAMVRYLHKSRSDVAPALLRLVFHDCFIEGCDASILL 131
G+ Y ++ D Y+ + +A+ +R + + AP +LRL +H D
Sbjct: 1 GKSYPTVSAD-YQKAVEKAKKKLRGFI-----AEKRCAPLMLRLAWHSAGT--FDKGTKT 52
Query: 132 DDAEGVDSEKKSPPNESLKGYDVINIIKEELEEICPGVVSCADILALAAREGVVLAGGPF 191
G + + G D+ + E L+ P ++S AD LA V + GGP
Sbjct: 53 GGPFGTIKHPAELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPE 111
Query: 192 YPLYTGRKDSRLAFADIATLELPSPNADLSETLASF--------ASRGFDLRETVTLLGA 243
P + GR+D P P L + + G ++ V L G
Sbjct: 112 VPFHPGREDK----------PEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGG 161
Query: 244 HSIGVIH 250
H+IG H
Sbjct: 162 HTIGAAH 168
>pdb|4FDQ|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 53/142 (37%), Gaps = 20/142 (14%)
Query: 113 LRLVFHDCFI-------EGCDASILLDDAEGVDSEKKSPPNESLKGYDVINIIKEELEEI 165
LRL FHD G D SI+ D E P N + I+ + +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDT----IETNFPANAGID-----EIVSAQKPFV 92
Query: 166 CPGVVSCADILALAAREGVV-LAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSETL 224
+S D + A GV GG P + GR D+ A D +P P + L
Sbjct: 93 AKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL---VPGPFDSVDSIL 149
Query: 225 ASFASRGFDLRETVTLLGAHSI 246
A GF E V LL +HSI
Sbjct: 150 ARMGDAGFSPVEVVWLLASHSI 171
>pdb|4FCS|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 53/142 (37%), Gaps = 20/142 (14%)
Query: 113 LRLVFHDCFI-------EGCDASILLDDAEGVDSEKKSPPNESLKGYDVINIIKEELEEI 165
LRL FHD G D SI+ D E P N + I+ + +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDT----IETNFPANAGID-----EIVSAQKPFV 92
Query: 166 CPGVVSCADILALAAREGVV-LAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSETL 224
+S D + A GV GG P + GR D+ A D +P P + L
Sbjct: 93 AKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL---VPEPFDSVDSIL 149
Query: 225 ASFASRGFDLRETVTLLGAHSI 246
A GF E V LL +HSI
Sbjct: 150 ARMGDAGFSPVEVVWLLASHSI 171
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 55/150 (36%), Gaps = 15/150 (10%)
Query: 109 APALLRLVFHDCFIEGC-DASILLDDAEG----VDSEKKSPPNESLK-GYDVINIIKEEL 162
P L+RL +H I G D + G E P N L+ G+ + I +E
Sbjct: 40 GPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF 96
Query: 163 EEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSE 222
I S D+ +L V GP P GR D+ LP + D
Sbjct: 97 PWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED-TTPDNGRLPDADKDAGY 150
Query: 223 TLASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L GAH++G H K
Sbjct: 151 VRTFFQRLNMNDREVVALKGAHALGKTHLK 180
>pdb|2VKA|A Chain A, Site-directed Mutagenesis Of The Catalytic Tryptophan
Environment In Pleurotus Eryngii Versatile Peroxidase
Length = 317
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 53/142 (37%), Gaps = 20/142 (14%)
Query: 113 LRLVFHDCFI-------EGCDASILLDDAEGVDSEKKSPPNESLKGYDVINIIKEELEEI 165
LRL FHD G D SI+ D E P N + I+ + +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDT----IETNFPANAGID-----EIVSAQKPFV 92
Query: 166 CPGVVSCADILALAAREGVV-LAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSETL 224
+S D + A GV GG P + GR D+ A D +P P + L
Sbjct: 93 AKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL---VPEPFDSVDSIL 149
Query: 225 ASFASRGFDLRETVTLLGAHSI 246
A GF E V LL +HSI
Sbjct: 150 ARMGDAGFSPVEVVWLLASHSI 171
>pdb|4G05|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 317
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 53/142 (37%), Gaps = 20/142 (14%)
Query: 113 LRLVFHDCFI-------EGCDASILLDDAEGVDSEKKSPPNESLKGYDVINIIKEELEEI 165
LRL FHD G D SI+ D E P N + I+ + +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDT----IETNFPANAGID-----EIVSAQKPFV 92
Query: 166 CPGVVSCADILALAAREGVV-LAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSETL 224
+S D + A GV GG P + GR D+ A D +P P + L
Sbjct: 93 AKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL---VPGPFDSVDSIL 149
Query: 225 ASFASRGFDLRETVTLLGAHSI 246
A GF E V LL +HSI
Sbjct: 150 ARMGDAGFSPVEVVWLLASHSI 171
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 55/148 (37%), Gaps = 11/148 (7%)
Query: 109 APALLRLVFHD--CFIEGCDASILLDDAEGVDSEKKSPPNESLK-GYDVINIIKEELEEI 165
P L+RL +H + + + E P N L+ G+ + I +E I
Sbjct: 43 GPVLVRLAWHTSGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFPWI 102
Query: 166 CPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDS-RLAFADIATLELPSPNADLSETL 224
S D+ +L V GP P GR D+ D L +AD T
Sbjct: 103 -----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTF 157
Query: 225 ASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L GAH++G H K
Sbjct: 158 --FQRLNMNDREVVALSGAHTLGKTHLK 183
>pdb|4FCN|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 319
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 53/142 (37%), Gaps = 20/142 (14%)
Query: 113 LRLVFHDCFI-------EGCDASILLDDAEGVDSEKKSPPNESLKGYDVINIIKEELEEI 165
LRL FHD G D SI+ D E P N + I+ + +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDT----IETNFPANAGID-----EIVSAQKPFV 92
Query: 166 CPGVVSCADILALAAREGVV-LAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSETL 224
+S D + A GV GG P + GR D+ A D +P P + L
Sbjct: 93 AKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL---VPGPFDSVDSIL 149
Query: 225 ASFASRGFDLRETVTLLGAHSI 246
A GF E V LL +HSI
Sbjct: 150 ARMGDAGFSPVEVVWLLASHSI 171
>pdb|2W23|A Chain A, Structure Of Mutant W169y Of Pleurotus Eryngii Versatile
Peroxidase (Vp)
Length = 316
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 53/142 (37%), Gaps = 20/142 (14%)
Query: 113 LRLVFHDCFI-------EGCDASILLDDAEGVDSEKKSPPNESLKGYDVINIIKEELEEI 165
LRL FHD G D SI+ D E P N + I+ + +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDT----IETNFPANAGID-----EIVSAQKPFV 92
Query: 166 CPGVVSCADILALAAREGVV-LAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSETL 224
+S D + A GV GG P + GR D+ A D +P P + L
Sbjct: 93 AKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL---VPEPFDSVDSIL 149
Query: 225 ASFASRGFDLRETVTLLGAHSI 246
A GF E V LL +HSI
Sbjct: 150 ARMGDAGFSPVEVVYLLASHSI 171
>pdb|3FM1|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 53/142 (37%), Gaps = 20/142 (14%)
Query: 113 LRLVFHDCFI-------EGCDASILLDDAEGVDSEKKSPPNESLKGYDVINIIKEELEEI 165
LRL FHD G D SI+ D E P N + I+ + +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDT----IETNFPANAGID-----EIVSAQKPFV 92
Query: 166 CPGVVSCADILALAAREGVV-LAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSETL 224
+S D + A GV GG P + GR D+ A D +P P + L
Sbjct: 93 AKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL---VPEPFDSVDSIL 149
Query: 225 ASFASRGFDLRETVTLLGAHSI 246
A GF E V LL +HSI
Sbjct: 150 ARMGDAGFSPVEVVWLLASHSI 171
>pdb|3FJW|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
pdb|3FJW|B Chain B, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 53/142 (37%), Gaps = 20/142 (14%)
Query: 113 LRLVFHDCFI-------EGCDASILLDDAEGVDSEKKSPPNESLKGYDVINIIKEELEEI 165
LRL FHD G D SI+ D E P N + I+ + +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDT----IETNFPANAGID-----EIVSAQKPFV 92
Query: 166 CPGVVSCADILALAAREGVV-LAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSETL 224
+S D + A GV GG P + GR D+ A D +P P + L
Sbjct: 93 AKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL---VPEPFDSVDSIL 149
Query: 225 ASFASRGFDLRETVTLLGAHSI 246
A GF E V LL +HSI
Sbjct: 150 ARMGDAGFSPVEVVWLLASHSI 171
>pdb|3FKG|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 53/142 (37%), Gaps = 20/142 (14%)
Query: 113 LRLVFHDCFI-------EGCDASILLDDAEGVDSEKKSPPNESLKGYDVINIIKEELEEI 165
LRL FHD G D SI+ D E P N + I+ + +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDT----IETNFPANAGID-----EIVSAQKPFV 92
Query: 166 CPGVVSCADILALAAREGVV-LAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSETL 224
+S D + A GV GG P + GR D+ A D +P P + L
Sbjct: 93 AKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL---VPEPFDSVDSIL 149
Query: 225 ASFASRGFDLRETVTLLGAHSI 246
A GF E V LL +HSI
Sbjct: 150 ARMGDAGFSPVEVVWLLASHSI 171
>pdb|2BOQ|A Chain A, Crystal Structure Of Versatile Peroxidase
Length = 331
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 53/142 (37%), Gaps = 20/142 (14%)
Query: 113 LRLVFHDCFI-------EGCDASILLDDAEGVDSEKKSPPNESLKGYDVINIIKEELEEI 165
LRL FHD G D SI+ D E P N + I+ + +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDT----IETNFPANAGID-----EIVSAQKPFV 92
Query: 166 CPGVVSCADILALAAREGVV-LAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSETL 224
+S D + A GV GG P + GR D+ A D +P P + L
Sbjct: 93 AKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL---VPEPFDSVDSIL 149
Query: 225 ASFASRGFDLRETVTLLGAHSI 246
A GF E V LL +HSI
Sbjct: 150 ARMGDAGFSPVEVVWLLASHSI 171
>pdb|3FM4|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 53/142 (37%), Gaps = 20/142 (14%)
Query: 113 LRLVFHDCFI-------EGCDASILLDDAEGVDSEKKSPPNESLKGYDVINIIKEELEEI 165
LRL FHD G D SI+ D E P N + I+ + +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDT----IETNFPANAGID-----EIVSAQKPFV 92
Query: 166 CPGVVSCADILALAAREGVV-LAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSETL 224
+S D + A GV GG P + GR D+ A D +P P + L
Sbjct: 93 AKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL---VPEPFDSVDSIL 149
Query: 225 ASFASRGFDLRETVTLLGAHSI 246
A GF E V LL +HSI
Sbjct: 150 ARMGDAGFSPVEVVWLLASHSI 171
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 64/176 (36%), Gaps = 26/176 (14%)
Query: 83 YRDSCPQAEGTIRAMVRYLHKSRSDVAPALLRLVFHDCFIEGCDASILLDDAEGVDSEKK 142
Y+ + +A+ +R + + AP +LRL +H D G
Sbjct: 23 YQKAVEKAKKKLRGFI-----AEKRCAPLMLRLAWHSAGT--FDKGTKTGGPFGTIKHPA 75
Query: 143 SPPNESLKGYDVINIIKEELEEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSR 202
+ + G D+ + E L+ P ++S AD LA V + GGP P + GR+D
Sbjct: 76 ELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK- 133
Query: 203 LAFADIATLELPSPNADLSETLASF--------ASRGFDLRETVTLLGAHSIGVIH 250
P P L + + G ++ V L G H+IG H
Sbjct: 134 ---------PEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH 180
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 70/187 (37%), Gaps = 27/187 (14%)
Query: 72 GEPYRSMEYDFYRDSCPQAEGTIRAMVRYLHKSRSDVAPALLRLVFHDCFIEGCDASILL 131
G+ Y ++ D Y+ + +A+ +R + + AP +L+L +H D
Sbjct: 1 GKSYPTVSAD-YQKAVEKAKKKLRGFI-----AEKRCAPLMLKLAWHSAGT--FDKGTKT 52
Query: 132 DDAEGVDSEKKSPPNESLKGYDVINIIKEELEEICPGVVSCADILALAAREGVVLAGGPF 191
G + + G D+ + E L+ P ++S AD LA V + GGP
Sbjct: 53 GGPFGTIKHPAELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPE 111
Query: 192 YPLYTGRKDSRLAFADIATLELPSPNADLSETLASF--------ASRGFDLRETVTLLGA 243
P + GR+D P P L + + G ++ V L G
Sbjct: 112 VPFHPGREDK----------PEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGG 161
Query: 244 HSIGVIH 250
H+IG H
Sbjct: 162 HTIGAAH 168
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 64/176 (36%), Gaps = 26/176 (14%)
Query: 83 YRDSCPQAEGTIRAMVRYLHKSRSDVAPALLRLVFHDCFIEGCDASILLDDAEGVDSEKK 142
Y+ + +A+ +R + + AP +LRL +H D G
Sbjct: 23 YQKAVEKAKKKLRGFI-----AEKRCAPLMLRLAWHSAGT--FDKGTKTGGPFGTIKHPA 75
Query: 143 SPPNESLKGYDVINIIKEELEEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSR 202
+ + G D+ + E L+ P ++S AD LA V + GGP P + GR+D
Sbjct: 76 ELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK- 133
Query: 203 LAFADIATLELPSPNADLSETLASF--------ASRGFDLRETVTLLGAHSIGVIH 250
P P L + + G ++ V L G H+IG H
Sbjct: 134 ---------PEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH 180
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 64/176 (36%), Gaps = 26/176 (14%)
Query: 83 YRDSCPQAEGTIRAMVRYLHKSRSDVAPALLRLVFHDCFIEGCDASILLDDAEGVDSEKK 142
Y+ + +A+ +R + + AP +LRL +H D G
Sbjct: 23 YQKAVEKAKKKLRGFI-----AEKRCAPLMLRLAWHSAGT--FDKGTKTGGPFGTIKHPA 75
Query: 143 SPPNESLKGYDVINIIKEELEEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSR 202
+ + G D+ + E L+ P ++S AD LA V + GGP P + GR+D
Sbjct: 76 ELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK- 133
Query: 203 LAFADIATLELPSPNADLSETLASF--------ASRGFDLRETVTLLGAHSIGVIH 250
P P L + + G ++ V L G H+IG H
Sbjct: 134 ---------PEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH 180
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
pdb|2ICV|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
Length = 291
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 55/150 (36%), Gaps = 15/150 (10%)
Query: 109 APALLRLVFHDCFIEGC-DASILLDDAEG----VDSEKKSPPNESLK-GYDVINIIKEEL 162
P L+RL +H I G D + G E P N L+ G+ + I +E
Sbjct: 40 GPELVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF 96
Query: 163 EEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSE 222
I S D+ +L V GP P GR D+ LP + D
Sbjct: 97 PWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED-TTPDNGRLPDADKDAGY 150
Query: 223 TLASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GAH++G K
Sbjct: 151 VRTFFQRLNMNDREVVALMGAHALGKTELK 180
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 69/187 (36%), Gaps = 27/187 (14%)
Query: 72 GEPYRSMEYDFYRDSCPQAEGTIRAMVRYLHKSRSDVAPALLRLVFHDCFIEGCDASILL 131
G+ Y ++ D Y+ + +A+ +R + + AP +L L +H D
Sbjct: 1 GKSYPTVSAD-YQKAVEKAKKKLRGFI-----AEKRCAPLMLALAWHSAGT--FDKGTKT 52
Query: 132 DDAEGVDSEKKSPPNESLKGYDVINIIKEELEEICPGVVSCADILALAAREGVVLAGGPF 191
G + + G D+ + E L+ P ++S AD LA V + GGP
Sbjct: 53 GGPFGTIKHPAELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPE 111
Query: 192 YPLYTGRKDSRLAFADIATLELPSPNADLSETLASF--------ASRGFDLRETVTLLGA 243
P + GR+D P P L + + G ++ V L G
Sbjct: 112 VPFHPGREDK----------PEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGG 161
Query: 244 HSIGVIH 250
H+IG H
Sbjct: 162 HTIGAAH 168
>pdb|1CCE|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
pdb|1CCG|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
Length = 291
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 55/150 (36%), Gaps = 15/150 (10%)
Query: 109 APALLRLVFHDCFIEGC-DASILLDDAEG----VDSEKKSPPNESLK-GYDVINIIKEEL 162
P L+RL +H I G D + G E P N L+ G+ + I +E
Sbjct: 40 GPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF 96
Query: 163 EEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSE 222
I S D+ +L V GP P GR D+ LP + D
Sbjct: 97 PWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED-TTPDNGRLPDADKDAGY 150
Query: 223 TLASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GA ++G H K
Sbjct: 151 VRTFFQRLNMNDREVVALMGAGALGKTHLK 180
>pdb|1DS4|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
Ph 6, 100k
pdb|1DSG|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 5, Room Temperature.
pdb|1DSO|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 6, Room Temperature.
pdb|1DSP|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 7, Room Temperature
Length = 292
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 55/150 (36%), Gaps = 15/150 (10%)
Query: 109 APALLRLVFHDCFIEGC-DASILLDDAEG----VDSEKKSPPNESLK-GYDVINIIKEEL 162
P L+RL +H I G D + G E P N L+ G+ + I +E
Sbjct: 41 GPVLVRLAWH---ISGTWDKHDNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEF 97
Query: 163 EEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSE 222
I S D+ +L V GP P GR D+ LP + D
Sbjct: 98 PWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPED-TTPDNGRLPDADKDAGY 151
Query: 223 TLASFASRGFDLRETVTLLGAHSIGVIHCK 252
F + RE V L+GA ++G H K
Sbjct: 152 VRTFFQRLNMNDREVVALMGAGALGKTHLK 181
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 63/176 (35%), Gaps = 26/176 (14%)
Query: 83 YRDSCPQAEGTIRAMVRYLHKSRSDVAPALLRLVFHDCFIEGCDASILLDDAEGVDSEKK 142
Y+ + +A+ +R + + AP +LRL H D G
Sbjct: 23 YQKAVEKAKKKLRGFI-----AEKRCAPLMLRLAAHSAGT--FDKGTKTGGPFGTIKHPA 75
Query: 143 SPPNESLKGYDVINIIKEELEEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSR 202
+ + G D+ + E L+ P ++S AD LA V + GGP P + GR+D
Sbjct: 76 ELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK- 133
Query: 203 LAFADIATLELPSPNADLSETLASF--------ASRGFDLRETVTLLGAHSIGVIH 250
P P L + + G ++ V L G H+IG H
Sbjct: 134 ---------PEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH 180
>pdb|1DSE|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
With Phosphate Bound, Ph 6, 100k
Length = 292
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 42/110 (38%), Gaps = 7/110 (6%)
Query: 144 PPNESLK-GYDVINIIKEELEEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSR 202
P N L+ G+ + I +E I S D+ +L V GP P GR D+
Sbjct: 78 PSNAGLQNGFKFLEPIHKEFPWI-----SSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTP 132
Query: 203 LAFADIATLELPSPNADLSETLASFASRGFDLRETVTLLGAHSIGVIHCK 252
LP + D F + RE V L+GA ++G H K
Sbjct: 133 ED-TTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAGALGKTHLK 181
>pdb|1QPA|A Chain A, Lignin Peroxidase Isozyme Lip4.65 (Pi 4.65)
pdb|1QPA|B Chain B, Lignin Peroxidase Isozyme Lip4.65 (Pi 4.65)
Length = 345
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 170 VSCADILALAAREGVV-LAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSETLASFA 228
V+ D +A A GV G P + GR ++ A D +P P + + LA
Sbjct: 104 VTPGDFIAFAGAVGVSNCPGAPQMQFFLGRPEATQAAPDGL---VPEPFHTIDQVLARML 160
Query: 229 -SRGFDLRETVTLLGAHSIG 247
+ GFD ETV LL AHSI
Sbjct: 161 DAGGFDEIETVXLLSAHSIA 180
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 42/108 (38%), Gaps = 19/108 (17%)
Query: 151 GYDVINIIKEELEEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLAFADIAT 210
G D+ + E L+ P ++S AD LA V + GGP P + GR+D
Sbjct: 84 GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK--------- 133
Query: 211 LELPSPNADLSETLASF--------ASRGFDLRETVTLLGAHSIGVIH 250
P P L + + G ++ V L G H+IG H
Sbjct: 134 -PEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH 180
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 42/108 (38%), Gaps = 19/108 (17%)
Query: 151 GYDVINIIKEELEEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLAFADIAT 210
G D+ + E L+ P ++S AD LA V + GGP P + GR+D
Sbjct: 84 GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK--------- 133
Query: 211 LELPSPNADLSETLASF--------ASRGFDLRETVTLLGAHSIGVIH 250
P P L + + G ++ V L G H+IG H
Sbjct: 134 -PEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH 180
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 69/187 (36%), Gaps = 27/187 (14%)
Query: 72 GEPYRSMEYDFYRDSCPQAEGTIRAMVRYLHKSRSDVAPALLRLVFHDCFIEGCDASILL 131
G+ Y ++ D Y+ + +A+ +R + + AP +LRL + D
Sbjct: 1 GKSYPTVSAD-YQKAVEKAKKKLRGFI-----AEKRCAPLMLRLAAYSAGT--FDKGTKT 52
Query: 132 DDAEGVDSEKKSPPNESLKGYDVINIIKEELEEICPGVVSCADILALAAREGVVLAGGPF 191
G + + G D+ + E L+ P ++S AD LA V + GGP
Sbjct: 53 GGPFGTIKHPAELAHSANNGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPE 111
Query: 192 YPLYTGRKDSRLAFADIATLELPSPNADLSETLASF--------ASRGFDLRETVTLLGA 243
P + GR+D P P L + + G ++ V L G
Sbjct: 112 VPFHPGREDK----------PEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGG 161
Query: 244 HSIGVIH 250
H+IG H
Sbjct: 162 HTIGAAH 168
>pdb|4FEF|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 52/142 (36%), Gaps = 20/142 (14%)
Query: 113 LRLVFHDCFI-------EGCDASILLDDAEGVDSEKKSPPNESLKGYDVINIIKEELEEI 165
LRL FHD G D SI+ D E P N + I+ + +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDT----IETNFPANAGID-----EIVSAQKPFV 92
Query: 166 CPGVVSCADILALAAREGVV-LAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSETL 224
+S D + A GV GG P + GR D+ A D +P + L
Sbjct: 93 AKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL---VPEGFDSVDSIL 149
Query: 225 ASFASRGFDLRETVTLLGAHSI 246
A GF E V LL +HSI
Sbjct: 150 ARMGDAGFSPVEVVWLLASHSI 171
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 42/108 (38%), Gaps = 19/108 (17%)
Query: 151 GYDVINIIKEELEEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLAFADIAT 210
G D+ + E L+ P ++S AD LA V + GGP P + GR+D
Sbjct: 84 GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDK--------- 133
Query: 211 LELPSPNADLSETLASF--------ASRGFDLRETVTLLGAHSIGVIH 250
P P L + + G ++ V L G H+IG H
Sbjct: 134 -PEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH 180
>pdb|3Q3U|A Chain A, Trametes Cervina Lignin Peroxidase
Length = 338
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Query: 170 VSCADILALAAREGVV-LAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSETLASFA 228
VS D + A G AGGP GR + D +P P + LA A
Sbjct: 104 VSFGDFVQFAGAVGAANCAGGPRLQFLAGRSNISQPSPDGL---VPDPTDSADKILARMA 160
Query: 229 SRGFDLRETVTLLGAHSI 246
GF E V LL +HSI
Sbjct: 161 DIGFSPTEVVHLLASHSI 178
>pdb|1LY8|A Chain A, The Crystal Structure Of A Mutant Enzyme Of Coprinus
Cinereus Peroxidase Provides An Understanding Of Its
Increased Thermostability And Insight Into Modelling Of
Protein Structures
pdb|1LY8|B Chain B, The Crystal Structure Of A Mutant Enzyme Of Coprinus
Cinereus Peroxidase Provides An Understanding Of Its
Increased Thermostability And Insight Into Modelling Of
Protein Structures
Length = 343
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 170 VSCADILALAAREGVV-LAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSETLASFA 228
VS D++ AA G+ G P TGR +S +P P ++ L F
Sbjct: 111 VSFGDLIQFAAAVGMSNCPGSPRLEFLTGRSNSSQP---SPPSLIPGPGNTVTAILDRFG 167
Query: 229 SRGFDLRETVTLLGAHSI 246
GF E V LL AHS+
Sbjct: 168 DAGFSPDEVVDLLAAHSL 185
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,026,081
Number of Sequences: 62578
Number of extensions: 446351
Number of successful extensions: 1218
Number of sequences better than 100.0: 123
Number of HSP's better than 100.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 964
Number of HSP's gapped (non-prelim): 203
length of query: 393
length of database: 14,973,337
effective HSP length: 101
effective length of query: 292
effective length of database: 8,652,959
effective search space: 2526664028
effective search space used: 2526664028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)