Query 016209
Match_columns 393
No_of_seqs 200 out of 1466
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 04:47:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016209.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016209hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 5E-103 1E-107 771.4 23.6 297 75-392 22-323 (324)
2 cd00693 secretory_peroxidase H 100.0 2.5E-98 5E-103 735.1 26.2 297 77-392 1-298 (298)
3 PLN02608 L-ascorbate peroxidas 100.0 1.3E-68 2.9E-73 520.3 20.2 232 91-390 14-257 (289)
4 PF00141 peroxidase: Peroxidas 100.0 2.6E-70 5.6E-75 519.9 7.5 228 94-357 1-230 (230)
5 cd00691 ascorbate_peroxidase A 100.0 1.6E-65 3.5E-70 492.8 17.9 229 89-378 11-251 (253)
6 PLN02364 L-ascorbate peroxidas 100.0 2.6E-64 5.7E-69 483.1 19.6 231 80-378 3-248 (250)
7 PLN02879 L-ascorbate peroxidas 100.0 1.3E-62 2.9E-67 470.8 19.9 220 91-378 17-248 (251)
8 cd00692 ligninase Ligninase an 100.0 3.3E-62 7.2E-67 483.1 19.5 235 90-392 16-286 (328)
9 cd00314 plant_peroxidase_like 100.0 3.8E-58 8.2E-63 441.7 16.0 223 93-374 2-255 (255)
10 cd00649 catalase_peroxidase_1 100.0 6.4E-55 1.4E-59 438.1 19.8 262 92-383 45-401 (409)
11 TIGR00198 cat_per_HPI catalase 100.0 1.7E-52 3.7E-57 444.1 20.5 271 83-381 45-406 (716)
12 PRK15061 catalase/hydroperoxid 100.0 6.3E-49 1.4E-53 414.9 20.3 271 83-383 47-414 (726)
13 cd08201 plant_peroxidase_like_ 100.0 4.1E-49 8.9E-54 377.9 10.8 214 99-374 32-264 (264)
14 cd08200 catalase_peroxidase_2 100.0 7.6E-39 1.6E-43 310.6 16.0 219 97-376 18-296 (297)
15 TIGR00198 cat_per_HPI catalase 100.0 9.5E-34 2.1E-38 301.4 16.3 220 92-376 428-709 (716)
16 PRK15061 catalase/hydroperoxid 100.0 3.1E-33 6.8E-38 296.0 17.0 218 97-376 443-721 (726)
17 COG0376 KatG Catalase (peroxid 100.0 3.6E-29 7.8E-34 254.8 16.7 255 93-376 71-416 (730)
18 COG0376 KatG Catalase (peroxid 99.4 9.1E-12 2E-16 128.4 14.0 214 97-376 453-725 (730)
19 PF13956 Ibs_toxin: Toxin Ibs, 58.3 6.3 0.00014 23.3 1.2 17 1-19 1-17 (19)
20 PF11895 DUF3415: Domain of un 41.5 23 0.00049 28.9 2.4 18 360-377 2-19 (80)
21 PTZ00411 transaldolase-like pr 38.1 92 0.002 31.8 6.7 65 170-234 161-230 (333)
22 KOG0400 40S ribosomal protein 35.2 28 0.00061 31.0 2.1 34 217-250 30-64 (151)
23 CHL00038 psbL photosystem II p 34.5 29 0.00062 24.2 1.7 12 6-17 22-33 (38)
24 PF10829 DUF2554: Protein of u 30.5 32 0.0007 27.4 1.6 17 1-17 1-17 (76)
25 PRK09810 entericidin A; Provis 27.9 43 0.00093 23.9 1.7 18 1-18 1-18 (41)
26 PLN02161 beta-amylase 22.6 1.1E+02 0.0023 33.2 4.2 34 350-387 234-272 (531)
27 COG5510 Predicted small secret 22.3 67 0.0014 23.3 1.8 20 1-20 1-23 (44)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=4.6e-103 Score=771.44 Aligned_cols=297 Identities=41% Similarity=0.719 Sum_probs=277.4
Q ss_pred CCCCCcccccCCCccHHHHHHHHHHHHHhhCCCccchhhhhhhhcccccCCCceEEecCCCCCCCcCCCCCCCCcchhHH
Q 016209 75 YRSMEYDFYRDSCPQAEGTIRAMVRYLHKSRSDVAPALLRLVFHDCFIEGCDASILLDDAEGVDSEKKSPPNESLKGYDV 154 (393)
Q Consensus 75 ~~~L~~~fY~~sCP~ae~iVr~~V~~~~~~d~~~a~~llRL~FHDCfv~GCDgSiLLd~~~~~~~E~~a~~N~~lrg~~v 154 (393)
.++|+++||++|||++|+||++.|+++++++|+++|++|||+||||||+||||||||+++ .+||++++|.+||||++
T Consensus 22 ~~~L~~~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDaSvLl~~~---~~Ek~a~~N~~l~Gf~~ 98 (324)
T PLN03030 22 GQGTRVGFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCFVRGCDASILIDGS---NTEKTALPNLLLRGYDV 98 (324)
T ss_pred hccCccchhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhheecCCceEEeeCCC---cccccCCCCcCcchHHH
Confidence 356999999999999999999999999999999999999999999999999999999964 37999999999999999
Q ss_pred HHHHHHHHHhhCCCcccHHHHHHHhhhhhhhhcCCCCcCCCCCccCCCcccccccccCCCCCCCChHHHHHHHHHCCCCc
Q 016209 155 INIIKEELEEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSETLASFASRGFDL 234 (393)
Q Consensus 155 I~~iK~~le~~cp~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~a~~~LP~p~~~~~~l~~~F~~~Gl~~ 234 (393)
|++||++||++||++|||||||||||||||+++|||.|+|++||||+++|.+.++. +||+|+.++++|++.|+++||+.
T Consensus 99 i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~-~LP~p~~~~~~l~~~F~~~Gl~~ 177 (324)
T PLN03030 99 IDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDAS-NLPGFTDSIDVQKQKFAAKGLNT 177 (324)
T ss_pred HHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCccccc-CCcCCCCCHHHHHHHHHHcCCCH
Confidence 99999999999999999999999999999999999999999999999999877764 89999999999999999999999
Q ss_pred ccceEEccccccccccccccccccccCCCCC-CCCCCCCHHHHHHHHhhCCCCCCCCCCCCCCccccccccCCCCccccc
Q 016209 235 RETVTLLGAHSIGVIHCKFFNNRLHNFGRSN-EPDPSLDPDFLNLLRSKCRNISSTSPTPSPPYALLASTFDEPGINVTY 313 (393)
Q Consensus 235 ~dlVaLsGAHTIG~ahc~~f~~Rlynf~g~~-~~dp~ld~~y~~~L~~~Cp~~~~~~~~~~~~~~~~p~~f~~~g~~~~~ 313 (393)
+|||+||||||||++||.+|.+|||||+|++ ++||+||+.|++.|++.||..+.... . +.+ +
T Consensus 178 ~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~-------~---------~~l-D 240 (324)
T PLN03030 178 QDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGSR-------R---------IAL-D 240 (324)
T ss_pred HHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCCCCc-------c---------ccC-C
Confidence 9999999999999999999999999999875 58999999999999999995322110 0 112 3
Q ss_pred CCCCCccchHHHHhhhcCcccccccccccCCcchHHHHHHHhhch----HHHHHHHHHHHHHHhcCCCCCCCCCeecccc
Q 016209 314 DGHQGGFGTVYYRSLLQNRGVLYADQQLMAGEETGIWVRAYASDV----SLFRRDFALAMMKLSNLRVLTGPMGQIRLNC 389 (393)
Q Consensus 314 ~~Tp~~FDN~Yy~~l~~~~glL~SD~~L~~d~~t~~~V~~yA~d~----~~F~~~Fa~Am~Km~~lgvltg~~GeIR~~C 389 (393)
..||.+|||+||+||++++|+|+|||+|+.|++|+++|+.||.|+ +.|+++|++||+|||+|+||||.+|||||+|
T Consensus 241 ~~Tp~~FDn~Yy~nll~~rGlL~SDq~L~~d~~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GEIRk~C 320 (324)
T PLN03030 241 TGSSNRFDASFFSNLKNGRGILESDQKLWTDASTRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTGTNGEIRKVC 320 (324)
T ss_pred CCCCcccccHHHHHHHhcCCCcCCchHhhcCccHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCCCCCceeccc
Confidence 489999999999999999999999999999999999999999875 5999999999999999999999999999999
Q ss_pred CCC
Q 016209 390 SKG 392 (393)
Q Consensus 390 ~~v 392 (393)
++|
T Consensus 321 ~~v 323 (324)
T PLN03030 321 SAI 323 (324)
T ss_pred ccc
Confidence 987
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=2.5e-98 Score=735.10 Aligned_cols=297 Identities=49% Similarity=0.828 Sum_probs=282.2
Q ss_pred CCCcccccCCCccHHHHHHHHHHHHHhhCCCccchhhhhhhhcccccCCCceEEecCCCCCCCcCCCCCCCCcchhHHHH
Q 016209 77 SMEYDFYRDSCPQAEGTIRAMVRYLHKSRSDVAPALLRLVFHDCFIEGCDASILLDDAEGVDSEKKSPPNESLKGYDVIN 156 (393)
Q Consensus 77 ~L~~~fY~~sCP~ae~iVr~~V~~~~~~d~~~a~~llRL~FHDCfv~GCDgSiLLd~~~~~~~E~~a~~N~~lrg~~vI~ 156 (393)
||+++||+++||++|+||+++|++.+.++++++|++|||+||||||+||||||||+++.+..+|+++++|.+|+||++|+
T Consensus 1 ~L~~~~Y~~sCP~~e~iV~~~v~~~~~~~~~~a~~~lRl~FHDc~v~GcDaSill~~~~~~~~E~~~~~N~~l~g~~~i~ 80 (298)
T cd00693 1 QLSVGFYSKSCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCFVRGCDASVLLDSTANNTSEKDAPPNLSLRGFDVID 80 (298)
T ss_pred CCCcccccCCCCChHHHHHHHHHHHHHhCCCcCchhhhhhhHhhhccCcceeEEecCCCCCchhccCCCCCCcchhHHHH
Confidence 59999999999999999999999999999999999999999999999999999999887778999999999999999999
Q ss_pred HHHHHHHhhCCCcccHHHHHHHhhhhhhhhcCCCCcCCCCCccCCCcccccccccCCCCCCCChHHHHHHHHHCCCCccc
Q 016209 157 IIKEELEEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSETLASFASRGFDLRE 236 (393)
Q Consensus 157 ~iK~~le~~cp~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~a~~~LP~p~~~~~~l~~~F~~~Gl~~~d 236 (393)
.||+++|+.||++|||||||+||||+||+++|||.|+|++||+|+.++.+..+ +.||+|+.+++++++.|+++||+++|
T Consensus 81 ~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~G~~~~d 159 (298)
T cd00693 81 DIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDV-GNLPSPFFSVSQLISLFASKGLTVTD 159 (298)
T ss_pred HHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccc-cCCCCcccCHHHHHHHHHHcCCCHHH
Confidence 99999999999999999999999999999999999999999999998877665 78999999999999999999999999
Q ss_pred ceEEccccccccccccccccccccCCCCCCCCCCCCHHHHHHHHhhCCCCCCCCCCCCCCccccccccCCCCcccccC-C
Q 016209 237 TVTLLGAHSIGVIHCKFFNNRLHNFGRSNEPDPSLDPDFLNLLRSKCRNISSTSPTPSPPYALLASTFDEPGINVTYD-G 315 (393)
Q Consensus 237 lVaLsGAHTIG~ahc~~f~~Rlynf~g~~~~dp~ld~~y~~~L~~~Cp~~~~~~~~~~~~~~~~p~~f~~~g~~~~~~-~ 315 (393)
||||+||||||++||.+|.+|||||+|++++||+||+.|+..|++.||.....+. . .++| .
T Consensus 160 ~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~-------~-----------~~lD~~ 221 (298)
T cd00693 160 LVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDDT-------L-----------VPLDPG 221 (298)
T ss_pred heeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCCCCCCCc-------c-----------ccCCCC
Confidence 9999999999999999999999999999999999999999999999996432110 0 1244 8
Q ss_pred CCCccchHHHHhhhcCcccccccccccCCcchHHHHHHHhhchHHHHHHHHHHHHHHhcCCCCCCCCCeeccccCCC
Q 016209 316 HQGGFGTVYYRSLLQNRGVLYADQQLMAGEETGIWVRAYASDVSLFRRDFALAMMKLSNLRVLTGPMGQIRLNCSKG 392 (393)
Q Consensus 316 Tp~~FDN~Yy~~l~~~~glL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgvltg~~GeIR~~C~~v 392 (393)
||.+|||+||++++.++|+|+|||+|+.|++|+++|++||.||+.|+++|++||+||++|+|+||.+||||++|++|
T Consensus 222 Tp~~FDn~Yy~~l~~~~glL~SD~~L~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Kl~~l~v~tg~~GeiR~~C~~~ 298 (298)
T cd00693 222 TPNTFDNSYYKNLLAGRGLLTSDQALLSDPRTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLTGSQGEIRKNCRVV 298 (298)
T ss_pred CCCccccHHHHHHHhcccCccCCHHhccCccHHHHHHHHhhCHHHHHHHHHHHHHHHhhcCCccCCCCccCCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999976
No 3
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=1.3e-68 Score=520.29 Aligned_cols=232 Identities=28% Similarity=0.398 Sum_probs=210.2
Q ss_pred HHHHHHHHHHHHhhCCCccchhhhhhhhccc-------ccCCCceEEecCCCCCCCcCCCCCCCCc-chhHHHHHHHHHH
Q 016209 91 EGTIRAMVRYLHKSRSDVAPALLRLVFHDCF-------IEGCDASILLDDAEGVDSEKKSPPNESL-KGYDVINIIKEEL 162 (393)
Q Consensus 91 e~iVr~~V~~~~~~d~~~a~~llRL~FHDCf-------v~GCDgSiLLd~~~~~~~E~~a~~N~~l-rg~~vI~~iK~~l 162 (393)
-+.++++|++ +.++|.++|.+|||+||||| ++||||||++. +|+++++|.+| +|+++|+.||+++
T Consensus 14 ~~~~~~~~~~-~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~------~E~~~~~N~gL~~g~~vid~iK~~~ 86 (289)
T PLN02608 14 IEKARRDLRA-LIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNE------EEYSHGANNGLKIAIDLCEPVKAKH 86 (289)
T ss_pred HHHHHHHHHH-HHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecc------cccCCccccchHHHHHHHHHHHHHc
Confidence 3456777744 66789999999999999999 99999999984 69999999999 6999999999987
Q ss_pred HhhCCCcccHHHHHHHhhhhhhhhcCCCCcCCCCCccCCCcccccccccCCCCCCCChHHHHHHHHHCCCCcccceEEcc
Q 016209 163 EEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSETLASFASRGFDLRETVTLLG 242 (393)
Q Consensus 163 e~~cp~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~a~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLsG 242 (393)
| +|||||||+||||+||+++|||.|+|++||+|+++++ ++++||+|+.+++++++.|+++|||++|||||+|
T Consensus 87 ----~-~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~---~~~~LP~p~~~~~~l~~~F~~~Gl~~~D~VaLsG 158 (289)
T PLN02608 87 ----P-KITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACP---EEGRLPDAKKGAKHLRDVFYRMGLSDKDIVALSG 158 (289)
T ss_pred ----C-CcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCC---ccCCCcCCCCCHHHHHHHHHHcCCCHHHHhhhcc
Confidence 4 8999999999999999999999999999999999885 3568999999999999999999999999999999
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCHHHHHHHHhhCCCCCCCCCCCCCCccccccccCCCCcccccCCCCCccch
Q 016209 243 AHSIGVIHCKFFNNRLHNFGRSNEPDPSLDPDFLNLLRSKCRNISSTSPTPSPPYALLASTFDEPGINVTYDGHQGGFGT 322 (393)
Q Consensus 243 AHTIG~ahc~~f~~Rlynf~g~~~~dp~ld~~y~~~L~~~Cp~~~~~~~~~~~~~~~~p~~f~~~g~~~~~~~Tp~~FDN 322 (393)
|||||++||. |+ +|.| + ++.||.+|||
T Consensus 159 AHTiG~ahc~----r~-g~~g---~---------------------------------------------~~~Tp~~FDN 185 (289)
T PLN02608 159 GHTLGRAHPE----RS-GFDG---P---------------------------------------------WTKEPLKFDN 185 (289)
T ss_pred cccccccccc----CC-CCCC---C---------------------------------------------CCCCCCccCh
Confidence 9999999995 54 3211 0 2367899999
Q ss_pred HHHHhhhcC--ccc--ccccccccCCcchHHHHHHHhhchHHHHHHHHHHHHHHhcCCCCCCCCCeeccccC
Q 016209 323 VYYRSLLQN--RGV--LYADQQLMAGEETGIWVRAYASDVSLFRRDFALAMMKLSNLRVLTGPMGQIRLNCS 390 (393)
Q Consensus 323 ~Yy~~l~~~--~gl--L~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgvltg~~GeIR~~C~ 390 (393)
+||++++.+ +|+ |+|||+|+.|++|+.+|+.||.|+++|+++|++||+||++|+|+||.+||+.+.-+
T Consensus 186 ~Yy~~ll~~~~~gll~L~SD~~L~~d~~T~~~V~~fA~~~~~F~~~Fa~Am~Km~~lgvltg~~Ge~~~~~~ 257 (289)
T PLN02608 186 SYFVELLKGESEGLLKLPTDKALLEDPEFRPYVELYAKDEDAFFRDYAESHKKLSELGFTPPSSAFKKKSTS 257 (289)
T ss_pred HHHHHHHcCCcCCccccccCHhhhcChhHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCCCCCCCcccccCc
Confidence 999999998 787 79999999999999999999999999999999999999999999999999988643
No 4
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=2.6e-70 Score=519.91 Aligned_cols=228 Identities=48% Similarity=0.829 Sum_probs=207.2
Q ss_pred HHHHHHHHHhhCCCccchhhhhhhhcccc-cCCCceEEecCCCCCCCcCCCCCCCCcc-hhHHHHHHHHHHHhhCCCccc
Q 016209 94 IRAMVRYLHKSRSDVAPALLRLVFHDCFI-EGCDASILLDDAEGVDSEKKSPPNESLK-GYDVINIIKEELEEICPGVVS 171 (393)
Q Consensus 94 Vr~~V~~~~~~d~~~a~~llRL~FHDCfv-~GCDgSiLLd~~~~~~~E~~a~~N~~lr-g~~vI~~iK~~le~~cp~~VS 171 (393)
||++|+++++.+++++|+||||+|||||+ +|||||||+. .+|+++++|.+|+ |+++|+.||+++|++||++||
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~~GcDgSil~~-----~~e~~~~~N~gl~~~~~~i~~ik~~~~~~cp~~VS 75 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVYGGCDGSILLF-----SAEKDAPPNRGLRDGFDVIDPIKAKLEAACPGVVS 75 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTHTSSSSGGGGS-----TTGGGSGGGTTHHHHHHHHHHHHHHHCHHSTTTS-
T ss_pred CHHHHHHHHHHCcCccHHHHHHHccccccccccccceecc-----ccccccccccCcceeeechhhHHhhhcccccCCCC
Confidence 79999999999999999999999999999 9999999983 4799999999997 999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhcCCCCcCCCCCccCCCcccccccccCCCCCCCChHHHHHHHHHCCCCcccceEEccccccccccc
Q 016209 172 CADILALAAREGVVLAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSETLASFASRGFDLRETVTLLGAHSIGVIHC 251 (393)
Q Consensus 172 cADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~a~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLsGAHTIG~ahc 251 (393)
|||||+||||+||+.+|||.|+|++||+|+.+++...+ .+||.|+.+++++++.|+++|||++|||||+||||||++||
T Consensus 76 ~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHTiG~~~c 154 (230)
T PF00141_consen 76 CADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGA-SNLPSPTDSVDQLLAFFARKGLSAEEMVALSGAHTIGRAHC 154 (230)
T ss_dssp HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHH-HHSSTTTSHHHHHHHHHHHTT--HHHHHHHHGGGGSTEESG
T ss_pred HHHHHHHHhhhccccccccccccccccccccccccccc-ccccccccccchhhhhhhccccchhhhcceeccccccccee
Confidence 99999999999999999999999999999999998766 78999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCCCCCCCHHHHHHHHhhCCCCCCCCCCCCCCccccccccCCCCcccccCCCCCccchHHHHhhhcC
Q 016209 252 KFFNNRLHNFGRSNEPDPSLDPDFLNLLRSKCRNISSTSPTPSPPYALLASTFDEPGINVTYDGHQGGFGTVYYRSLLQN 331 (393)
Q Consensus 252 ~~f~~Rlynf~g~~~~dp~ld~~y~~~L~~~Cp~~~~~~~~~~~~~~~~p~~f~~~g~~~~~~~Tp~~FDN~Yy~~l~~~ 331 (393)
.+|. ||| + .+||+||+.|+.. .| ..+..+ . .++| ||.+|||+||++++++
T Consensus 155 ~~f~-rl~-~----~~dp~~d~~~~~~---~C-~~~~~~--------~-----------~~~d-tp~~fDN~Yy~~ll~~ 204 (230)
T PF00141_consen 155 SSFS-RLY-F----PPDPTMDPGYAGQ---NC-NSGGDN--------G-----------VPLD-TPTVFDNSYYKNLLNG 204 (230)
T ss_dssp GCTG-GTS-C----SSGTTSTHHHHHH---SS-STSGCT--------C-----------EESS-STTS-SSHHHHHHHHT
T ss_pred cccc-ccc-c----cccccccccccee---cc-CCCccc--------c-----------cccc-CCCcchhHHHHHHhcC
Confidence 9999 999 5 6799999999988 99 332211 0 1246 9999999999999999
Q ss_pred cccccccccccCCcchHHHHHHHhhc
Q 016209 332 RGVLYADQQLMAGEETGIWVRAYASD 357 (393)
Q Consensus 332 ~glL~SD~~L~~d~~t~~~V~~yA~d 357 (393)
+|+|+|||+|+.|++|+++|++||+|
T Consensus 205 ~gll~SD~~L~~d~~t~~~V~~yA~d 230 (230)
T PF00141_consen 205 RGLLPSDQALLNDPETRPIVERYAQD 230 (230)
T ss_dssp EEEEHHHHHHHHSTTHHHHHHHHHHT
T ss_pred CCcCHHHHHHhcCHHHHHHHHHHhcC
Confidence 99999999999999999999999986
No 5
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=1.6e-65 Score=492.85 Aligned_cols=229 Identities=28% Similarity=0.380 Sum_probs=207.7
Q ss_pred cHHHHHHHHHHHHHhhCCCccchhhhhhhhcccccCCCceEEecCCC---CCCCcCCCCCCCCc-chhHHHHHHHHHHHh
Q 016209 89 QAEGTIRAMVRYLHKSRSDVAPALLRLVFHDCFIEGCDASILLDDAE---GVDSEKKSPPNESL-KGYDVINIIKEELEE 164 (393)
Q Consensus 89 ~ae~iVr~~V~~~~~~d~~~a~~llRL~FHDCfv~GCDgSiLLd~~~---~~~~E~~a~~N~~l-rg~~vI~~iK~~le~ 164 (393)
..++||++.|++.++ +++++|++|||+|||||+ ||+|+++++.. .+.+|+++++|.+| +||++|++||+++
T Consensus 11 ~~~~~V~~~v~~~~~-~~~~~~~llRl~FHDc~~--~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~iK~~~-- 85 (253)
T cd00691 11 KDLEAARNDIAKLID-DKNCAPILVRLAWHDSGT--YDKETKTGGSNGTIRFDPELNHGANAGLDIARKLLEPIKKKY-- 85 (253)
T ss_pred HHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhc--cccccCCCCCCccccchhhcCCccccchHHHHHHHHHHHHHc--
Confidence 347899999999999 999999999999999994 88888775432 23479999999999 8999999999876
Q ss_pred hCCCcccHHHHHHHhhhhhhhhcCCCCcCCCCCccCCCcccccccccCCCCCCCChHHHHHHHHHCCCCcccceEEcccc
Q 016209 165 ICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSETLASFASRGFDLRETVTLLGAH 244 (393)
Q Consensus 165 ~cp~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~a~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLsGAH 244 (393)
| +|||||||+||||+||+.+|||.|+|++||+|+.++....++++||.|+.+++++++.|+++||+++|||||+|||
T Consensus 86 --~-~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~VaLsGaH 162 (253)
T cd00691 86 --P-DISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQEIVALSGAH 162 (253)
T ss_pred --C-CCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHHHHhcccc
Confidence 5 7999999999999999999999999999999999998777788999999999999999999999999999999999
Q ss_pred ccccccccccccccccCCCCCCCCCCCCHHHHHHHHhhCCCCCCCCCCCCCCccccccccCCCCcccccCCCCCccchHH
Q 016209 245 SIGVIHCKFFNNRLHNFGRSNEPDPSLDPDFLNLLRSKCRNISSTSPTPSPPYALLASTFDEPGINVTYDGHQGGFGTVY 324 (393)
Q Consensus 245 TIG~ahc~~f~~Rlynf~g~~~~dp~ld~~y~~~L~~~Cp~~~~~~~~~~~~~~~~p~~f~~~g~~~~~~~Tp~~FDN~Y 324 (393)
|||++||.. ++|.| + ++.||.+|||+|
T Consensus 163 TiG~a~c~~-----~~~~g---~---------------------------------------------~~~tp~~FDn~Y 189 (253)
T cd00691 163 TLGRCHKER-----SGYDG---P---------------------------------------------WTKNPLKFDNSY 189 (253)
T ss_pred eeecccccC-----CCCCC---C---------------------------------------------CCCCCCcccHHH
Confidence 999999953 12211 0 235789999999
Q ss_pred HHhhhcCcc--------cccccccccCCcchHHHHHHHhhchHHHHHHHHHHHHHHhcCCCC
Q 016209 325 YRSLLQNRG--------VLYADQQLMAGEETGIWVRAYASDVSLFRRDFALAMMKLSNLRVL 378 (393)
Q Consensus 325 y~~l~~~~g--------lL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgvl 378 (393)
|++|+.++| +|+|||+|+.|++|+.+|+.||.|+++|+++|++||+||++|+|.
T Consensus 190 y~~ll~~~g~~~~~~~~~L~sD~~L~~d~~t~~~v~~~a~~~~~F~~~Fa~Am~Km~~l~v~ 251 (253)
T cd00691 190 FKELLEEDWKLPTPGLLMLPTDKALLEDPKFRPYVELYAKDQDAFFKDYAEAHKKLSELGVP 251 (253)
T ss_pred HHHHhcCCCccCcCcceechhhHHHHcCccHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999 999999999999999999999999999999999999999999985
No 6
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=2.6e-64 Score=483.12 Aligned_cols=231 Identities=28% Similarity=0.435 Sum_probs=207.2
Q ss_pred ccccc--CCCccHHHHHHHHHHHHHhhCCCccchhhhhhhh-----ccccc--CCCceEEecCCCCCCCcCCCCCCCCc-
Q 016209 80 YDFYR--DSCPQAEGTIRAMVRYLHKSRSDVAPALLRLVFH-----DCFIE--GCDASILLDDAEGVDSEKKSPPNESL- 149 (393)
Q Consensus 80 ~~fY~--~sCP~ae~iVr~~V~~~~~~d~~~a~~llRL~FH-----DCfv~--GCDgSiLLd~~~~~~~E~~a~~N~~l- 149 (393)
.+||. +-|+++++.+++.+++.+ .++.++|.||||+|| ||+++ ||||||.. .+|+++++|.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~------~~E~~~~~N~gl~ 75 (250)
T PLN02364 3 KNYPTVSEDYKKAVEKCRRKLRGLI-AEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRF------DAEQAHGANSGIH 75 (250)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHccccCcCcCCCCCCCCccccc------cccccCCCccCHH
Confidence 35665 348899999999999988 788999999999999 88876 99999943 479999999998
Q ss_pred chhHHHHHHHHHHHhhCCCcccHHHHHHHhhhhhhhhcCCCCcCCCCCccCCCcccccccccCCCCCCCChHHHHHHHHH
Q 016209 150 KGYDVINIIKEELEEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSETLASFAS 229 (393)
Q Consensus 150 rg~~vI~~iK~~le~~cp~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~a~~~LP~p~~~~~~l~~~F~~ 229 (393)
+||++|+.||+++ ++|||||||+||||+||+++|||.|+|++||+|++++++ +++||.|+.++++|++.|++
T Consensus 76 ~~~~~i~~ik~~~-----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~---~~~lP~p~~~~~~l~~~F~~ 147 (250)
T PLN02364 76 IALRLLDPIREQF-----PTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPP---EGRLPDATKGCDHLRDVFAK 147 (250)
T ss_pred HHHHHHHHHHHHc-----CCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCcccccc---cCCCCCCCcCHHHHHHHHHH
Confidence 8999999999988 489999999999999999999999999999999998864 56899999999999999997
Q ss_pred -CCCCcccceEEccccccccccccccccccccCCCCCCCCCCCCHHHHHHHHhhCCCCCCCCCCCCCCccccccccCCCC
Q 016209 230 -RGFDLRETVTLLGAHSIGVIHCKFFNNRLHNFGRSNEPDPSLDPDFLNLLRSKCRNISSTSPTPSPPYALLASTFDEPG 308 (393)
Q Consensus 230 -~Gl~~~dlVaLsGAHTIG~ahc~~f~~Rlynf~g~~~~dp~ld~~y~~~L~~~Cp~~~~~~~~~~~~~~~~p~~f~~~g 308 (393)
+|||++|||||+||||||++|| +|+ +|.|
T Consensus 148 ~~Gl~~~d~VaLsGaHTiG~~hc----~r~-~~~g--------------------------------------------- 177 (250)
T PLN02364 148 QMGLSDKDIVALSGAHTLGRCHK----DRS-GFEG--------------------------------------------- 177 (250)
T ss_pred hcCCCHHHheeeecceeeccccC----CCC-CCCC---------------------------------------------
Confidence 5999999999999999999999 344 2211
Q ss_pred cccccCCCCCccchHHHHhhhcC--ccccc--ccccccCCcchHHHHHHHhhchHHHHHHHHHHHHHHhcCCCC
Q 016209 309 INVTYDGHQGGFGTVYYRSLLQN--RGVLY--ADQQLMAGEETGIWVRAYASDVSLFRRDFALAMMKLSNLRVL 378 (393)
Q Consensus 309 ~~~~~~~Tp~~FDN~Yy~~l~~~--~glL~--SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgvl 378 (393)
.++.||.+|||+||++++.+ +|+|. |||+|+.|++|+.+|+.||.|++.|+++|++||+||++|++-
T Consensus 178 ---~~~~tp~~fDn~Yy~~ll~~~~~gll~l~sD~~L~~d~~T~~~v~~~a~~~~~F~~~Fa~Am~Km~~lg~~ 248 (250)
T PLN02364 178 ---AWTSNPLIFDNSYFKELLSGEKEGLLQLVSDKALLDDPVFRPLVEKYAADEDAFFADYAEAHMKLSELGFA 248 (250)
T ss_pred ---CCCCCCCccchHHHHHHhcCCcCCCccccchHHHccCchHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 02468899999999999999 89865 999999999999999999999999999999999999999973
No 7
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=1.3e-62 Score=470.82 Aligned_cols=220 Identities=27% Similarity=0.386 Sum_probs=197.4
Q ss_pred HHHHHHHHHHHHhhCCCccchhhhhhhhccc-------ccCCCceEEecCCCCCCCcCCCCCCCCcc-hhHHHHHHHHHH
Q 016209 91 EGTIRAMVRYLHKSRSDVAPALLRLVFHDCF-------IEGCDASILLDDAEGVDSEKKSPPNESLK-GYDVINIIKEEL 162 (393)
Q Consensus 91 e~iVr~~V~~~~~~d~~~a~~llRL~FHDCf-------v~GCDgSiLLd~~~~~~~E~~a~~N~~lr-g~~vI~~iK~~l 162 (393)
.+-+++.+.+.+ .+...+|.+|||+||||. .|||||||++. .|+++++|.+|+ ++++|+.||+++
T Consensus 17 ~~~~~~~~~~~~-~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~------~E~~~~~N~gL~~~~~~i~~iK~~~ 89 (251)
T PLN02879 17 VQRCKRKLRGLI-AEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHP------QELAHDANNGLDIAVRLLDPIKELF 89 (251)
T ss_pred HHHHHHHHHHHH-hCCCchhHhHHHHHhhhccccCCCCCCCCCeeecCh------hhccCCCcCChHHHHHHHHHHHHHc
Confidence 344577777776 456999999999999996 49999999863 699999999997 999999999987
Q ss_pred HhhCCCcccHHHHHHHhhhhhhhhcCCCCcCCCCCccCCCcccccccccCCCCCCCChHHHHHHHHHCCCCcccceEEcc
Q 016209 163 EEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSETLASFASRGFDLRETVTLLG 242 (393)
Q Consensus 163 e~~cp~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~a~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLsG 242 (393)
++|||||||+||||+||+++|||.|+|++||+|+..+. ++++||.|+.+++++++.|+++||+++|||||+|
T Consensus 90 -----~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~---~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVALsG 161 (251)
T PLN02879 90 -----PILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPP---PEGRLPQATKGVDHLRDVFGRMGLNDKDIVALSG 161 (251)
T ss_pred -----CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCC---cccCCCCCCCCHHHHHHHHHHcCCCHHHHeeeec
Confidence 47999999999999999999999999999999999875 4578999999999999999999999999999999
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCHHHHHHHHhhCCCCCCCCCCCCCCccccccccCCCCcccccCCCCCccch
Q 016209 243 AHSIGVIHCKFFNNRLHNFGRSNEPDPSLDPDFLNLLRSKCRNISSTSPTPSPPYALLASTFDEPGINVTYDGHQGGFGT 322 (393)
Q Consensus 243 AHTIG~ahc~~f~~Rlynf~g~~~~dp~ld~~y~~~L~~~Cp~~~~~~~~~~~~~~~~p~~f~~~g~~~~~~~Tp~~FDN 322 (393)
|||||++||. | ++|.| .++.||.+|||
T Consensus 162 aHTiG~ah~~----r-~g~~g------------------------------------------------~~d~tp~~FDN 188 (251)
T PLN02879 162 GHTLGRCHKE----R-SGFEG------------------------------------------------AWTPNPLIFDN 188 (251)
T ss_pred cccccccccc----c-ccCCC------------------------------------------------CCCCCccceeH
Confidence 9999999996 3 22211 13568999999
Q ss_pred HHHHhhhcC--ccc--ccccccccCCcchHHHHHHHhhchHHHHHHHHHHHHHHhcCCCC
Q 016209 323 VYYRSLLQN--RGV--LYADQQLMAGEETGIWVRAYASDVSLFRRDFALAMMKLSNLRVL 378 (393)
Q Consensus 323 ~Yy~~l~~~--~gl--L~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgvl 378 (393)
+||++|+.+ +|+ |+||++|+.|++|+.+|++||.||++|+++|++||+||++|++.
T Consensus 189 ~Yy~~ll~~~~~gll~L~SD~aL~~D~~t~~~V~~~A~d~~~F~~~Fa~Am~KL~~lg~~ 248 (251)
T PLN02879 189 SYFKEILSGEKEGLLQLPTDKALLDDPLFLPFVEKYAADEDAFFEDYTEAHLKLSELGFA 248 (251)
T ss_pred HHHHHHHcCCcCCCccchhhHHHhcCCcHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 999999999 887 68999999999999999999999999999999999999999974
No 8
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=3.3e-62 Score=483.15 Aligned_cols=235 Identities=29% Similarity=0.354 Sum_probs=209.4
Q ss_pred HHHHHHHHHHHHHhh---CCCccchhhhhhhhcccc------------cCCCceEEecCCCCCCCcCCCCCCCCcchhHH
Q 016209 90 AEGTIRAMVRYLHKS---RSDVAPALLRLVFHDCFI------------EGCDASILLDDAEGVDSEKKSPPNESLKGYDV 154 (393)
Q Consensus 90 ae~iVr~~V~~~~~~---d~~~a~~llRL~FHDCfv------------~GCDgSiLLd~~~~~~~E~~a~~N~~lrg~~v 154 (393)
++..|+++|++.+.. +...|+.+|||+||||++ +|||||||++.+ .|+++++|.+|+ ++
T Consensus 16 ~~~~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~----~E~~~~~N~gL~--~v 89 (328)
T cd00692 16 VWFDILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDD----IETAFHANIGLD--EI 89 (328)
T ss_pred chHHHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCc----ccccCCCCCCHH--HH
Confidence 367899999999974 445677799999999996 899999999843 699999999998 99
Q ss_pred HHHHHHHHHhhCCCcccHHHHHHHhhhhhhh-hcCCCCcCCCCCccCCCcccccccccCCCCCCCChHHHHHHHHHCCCC
Q 016209 155 INIIKEELEEICPGVVSCADILALAAREGVV-LAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSETLASFASRGFD 233 (393)
Q Consensus 155 I~~iK~~le~~cp~~VScADilalAardAV~-~~GGP~~~v~~GR~D~~~s~~~~a~~~LP~p~~~~~~l~~~F~~~Gl~ 233 (393)
|+.||..+|+.| |||||||+||||+||+ ++|||.|+|++||+|++++. ++++||.|+.+++++++.|+++||+
T Consensus 90 vd~lk~~~e~~c---VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~---~~g~LP~p~~sv~~l~~~F~~~Gf~ 163 (328)
T cd00692 90 VEALRPFHQKHN---VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPA---PDGLVPEPFDSVDKILARFADAGFS 163 (328)
T ss_pred HHHHHHHHHhcC---cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCC---cccCCCCCCCCHHHHHHHHHHcCCC
Confidence 999999999998 9999999999999999 67999999999999999885 4568999999999999999999999
Q ss_pred cccceEEccccccccccccccccccccCCCCCCCCCCCCHHHHHHHHhhCCCCCCCCCCCCCCccccccccCCCCccccc
Q 016209 234 LRETVTLLGAHSIGVIHCKFFNNRLHNFGRSNEPDPSLDPDFLNLLRSKCRNISSTSPTPSPPYALLASTFDEPGINVTY 313 (393)
Q Consensus 234 ~~dlVaLsGAHTIG~ahc~~f~~Rlynf~g~~~~dp~ld~~y~~~L~~~Cp~~~~~~~~~~~~~~~~p~~f~~~g~~~~~ 313 (393)
++|||||+||||||++|. +||+++. .++
T Consensus 164 ~~E~VaLsGAHTiG~a~~---------------~Dps~~g-------------------------------------~p~ 191 (328)
T cd00692 164 PDELVALLAAHSVAAQDF---------------VDPSIAG-------------------------------------TPF 191 (328)
T ss_pred HHHHhhhcccccccccCC---------------CCCCCCC-------------------------------------CCC
Confidence 999999999999999982 3666641 015
Q ss_pred CCCCCccchHHHHhhh-cCcc-------------------cccccccccCCcchHHHHHHHhhchHHHHHHHHHHHHHHh
Q 016209 314 DGHQGGFGTVYYRSLL-QNRG-------------------VLYADQQLMAGEETGIWVRAYASDVSLFRRDFALAMMKLS 373 (393)
Q Consensus 314 ~~Tp~~FDN~Yy~~l~-~~~g-------------------lL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~ 373 (393)
|.||.+|||+||+|++ ++++ +|+||++|+.|++|+.+|+.||+||++|+++|++||+||+
T Consensus 192 D~TP~~FDn~Yf~~ll~~~~~~~g~~~~~~e~~~~~~g~~~L~SD~~L~~D~~T~~~v~~fa~dq~~f~~~Fa~Am~KLs 271 (328)
T cd00692 192 DSTPGVFDTQFFIETLLKGTAFPGSGGNQGEVESPLPGEFRLQSDFLLARDPRTACEWQSFVNNQAKMNAAFAAAMLKLS 271 (328)
T ss_pred CCCcchhcHHHHHHHHHcCCCCCCccccccccccCccccccccchHHHhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 6899999999999987 5555 4999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCeeccccCCC
Q 016209 374 NLRVLTGPMGQIRLNCSKG 392 (393)
Q Consensus 374 ~lgvltg~~GeIR~~C~~v 392 (393)
+|||. +..+.+|+.|
T Consensus 272 ~lgv~----~~~l~dcs~v 286 (328)
T cd00692 272 LLGQD----NISLTDCSDV 286 (328)
T ss_pred cCCCC----cchhccCccc
Confidence 99986 3477799876
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=3.8e-58 Score=441.69 Aligned_cols=223 Identities=33% Similarity=0.448 Sum_probs=205.8
Q ss_pred HHHHHHHHHHhhCCCccchhhhhhhhccccc--------CCCceEEecCCCCCCCcCCCCCCCCc-chhHHHHHHHHHHH
Q 016209 93 TIRAMVRYLHKSRSDVAPALLRLVFHDCFIE--------GCDASILLDDAEGVDSEKKSPPNESL-KGYDVINIIKEELE 163 (393)
Q Consensus 93 iVr~~V~~~~~~d~~~a~~llRL~FHDCfv~--------GCDgSiLLd~~~~~~~E~~a~~N~~l-rg~~vI~~iK~~le 163 (393)
.|+..|++.+.+++.+++++|||+||||++. ||||||+++ +|+++++|.+| +++++|+.||+++|
T Consensus 2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~------~e~~~~~N~~l~~~~~~l~~ik~~~~ 75 (255)
T cd00314 2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFE------PELDRPENGGLDKALRALEPIKSAYD 75 (255)
T ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEecc------ccccCcccccHHHHHHHHHHHHHHcC
Confidence 5888999999999999999999999999986 999999997 39999999996 99999999999999
Q ss_pred hhCCCcccHHHHHHHhhhhhhhhc--CCCCcCCCCCccCCCccc--ccccccCCCCCCCChHHHHHHHHHCCCCcccceE
Q 016209 164 EICPGVVSCADILALAAREGVVLA--GGPFYPLYTGRKDSRLAF--ADIATLELPSPNADLSETLASFASRGFDLRETVT 239 (393)
Q Consensus 164 ~~cp~~VScADilalAardAV~~~--GGP~~~v~~GR~D~~~s~--~~~a~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVa 239 (393)
. |++|||||||++||++||+.+ |||.|+|++||+|+..++ ...+.+.+|.|+.+++++++.|.++||+++||||
T Consensus 76 ~--~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e~VA 153 (255)
T cd00314 76 G--GNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSELVA 153 (255)
T ss_pred C--CCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHHHHHh
Confidence 8 899999999999999999999 999999999999999764 3345677888889999999999999999999999
Q ss_pred Ec-ccccc-ccccccccccccccCCCCCCCCCCCCHHHHHHHHhhCCCCCCCCCCCCCCccccccccCCCCcccccCCCC
Q 016209 240 LL-GAHSI-GVIHCKFFNNRLHNFGRSNEPDPSLDPDFLNLLRSKCRNISSTSPTPSPPYALLASTFDEPGINVTYDGHQ 317 (393)
Q Consensus 240 Ls-GAHTI-G~ahc~~f~~Rlynf~g~~~~dp~ld~~y~~~L~~~Cp~~~~~~~~~~~~~~~~p~~f~~~g~~~~~~~Tp 317 (393)
|+ ||||| |++||..|..|+ |+ .++.||
T Consensus 154 L~~GaHti~G~~~~~~~~~~~------------------------~~---------------------------~~~~tp 182 (255)
T cd00314 154 LSAGAHTLGGKNHGDLLNYEG------------------------SG---------------------------LWTSTP 182 (255)
T ss_pred hccCCeeccCcccCCCCCccc------------------------CC---------------------------CCCCCC
Confidence 99 99999 999999877664 21 145789
Q ss_pred CccchHHHHhhhcCc----------------ccccccccccCCcchHHHHHHHhhchHHHHHHHHHHHHHHhc
Q 016209 318 GGFGTVYYRSLLQNR----------------GVLYADQQLMAGEETGIWVRAYASDVSLFRRDFALAMMKLSN 374 (393)
Q Consensus 318 ~~FDN~Yy~~l~~~~----------------glL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~ 374 (393)
.+|||+||++++.++ ++|+||++|+.|++|+.+|+.||.|+++|+++|++||+||++
T Consensus 183 ~~fDN~yy~~l~~~~~~~~~~~~~~~~~~~~~~l~sD~~L~~d~~t~~~v~~ya~~~~~f~~~Fa~a~~Km~~ 255 (255)
T cd00314 183 FTFDNAYFKNLLDMNWEWRVGSPDPDGVKGPGLLPSDYALLSDSETRALVERYASDQEKFFEDFAKAWIKMVN 255 (255)
T ss_pred CccchHHHHHHhcCCcccccCCccCCCcccCCCchhhHHHhcCHhHHHHHHHHHhCHHHHHHHHHHHHHHHcC
Confidence 999999999999998 899999999999999999999999999999999999999984
No 10
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=6.4e-55 Score=438.06 Aligned_cols=262 Identities=20% Similarity=0.248 Sum_probs=225.1
Q ss_pred HHHHHHHHHHHhhC--------CCccchhhhhhhhcccc-------cCCC-ceEEecCCCCCCCcCCCCCCCCc-chhHH
Q 016209 92 GTIRAMVRYLHKSR--------SDVAPALLRLVFHDCFI-------EGCD-ASILLDDAEGVDSEKKSPPNESL-KGYDV 154 (393)
Q Consensus 92 ~iVr~~V~~~~~~d--------~~~a~~llRL~FHDCfv-------~GCD-gSiLLd~~~~~~~E~~a~~N~~l-rg~~v 154 (393)
+.|+++|++.+... ...+|.+|||+|||+.+ ||++ |+|.+. +|++++.|.+| +++.+
T Consensus 45 ~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~------pe~~~~~N~gL~~a~~~ 118 (409)
T cd00649 45 EALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFA------PLNSWPDNVNLDKARRL 118 (409)
T ss_pred HHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccc------cccCcHhhhhHHHHHHH
Confidence 67899999999864 47999999999999984 8997 788775 69999999988 57888
Q ss_pred HHHHHHHHHhhCCCcccHHHHHHHhhhhhhhhcCCCCcCCCCCccCCCccccc---------------------------
Q 016209 155 INIIKEELEEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLAFAD--------------------------- 207 (393)
Q Consensus 155 I~~iK~~le~~cp~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~--------------------------- 207 (393)
++.||+++ |..||+||+|+||+..||+.+|||.|++.+||.|...+...
T Consensus 119 L~pik~k~----~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~~~~~~l~~pl~a 194 (409)
T cd00649 119 LWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLADKRYSGDRDLENPLAA 194 (409)
T ss_pred HHHHHHHc----CCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhcccccccccchhhccchhh
Confidence 88888766 45799999999999999999999999999999999754320
Q ss_pred --------cccc--CCCCCCCChHHHHHHHHHCCCCcccceEE-ccccccccccccccccccccCCCCCCCCCCCCHHHH
Q 016209 208 --------IATL--ELPSPNADLSETLASFASRGFDLRETVTL-LGAHSIGVIHCKFFNNRLHNFGRSNEPDPSLDPDFL 276 (393)
Q Consensus 208 --------~a~~--~LP~p~~~~~~l~~~F~~~Gl~~~dlVaL-sGAHTIG~ahc~~f~~Rlynf~g~~~~dp~ld~~y~ 276 (393)
.+++ .||+|..++.+|++.|.+||||++||||| +||||||++||.+|.+|| ++||++++.|+
T Consensus 195 ~~mgliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rl-------g~dP~~~~~~~ 267 (409)
T cd00649 195 VQMGLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASHV-------GPEPEAAPIEQ 267 (409)
T ss_pred hhccccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHHHHeeeccCCcceeecCcccccccC-------CCCCCcCHHHH
Confidence 1223 79999999999999999999999999999 599999999999999998 36999999999
Q ss_pred HHHH--hhCCCCCCCCCCCCCCccccccccCCCCcccccCCCCCccchHHHHhhhc------------------------
Q 016209 277 NLLR--SKCRNISSTSPTPSPPYALLASTFDEPGINVTYDGHQGGFGTVYYRSLLQ------------------------ 330 (393)
Q Consensus 277 ~~L~--~~Cp~~~~~~~~~~~~~~~~p~~f~~~g~~~~~~~Tp~~FDN~Yy~~l~~------------------------ 330 (393)
+.|+ +.||.+.+..+. .+ |....++.||.+|||+||++|++
T Consensus 268 ~gLgw~~~Cp~g~g~~t~------~s-------glDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~~~~~~~~ 334 (409)
T cd00649 268 QGLGWKNSYGTGKGKDTI------TS-------GLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAWQWVPKNAAGEN 334 (409)
T ss_pred HhhcccccCCCCCCCCCc------cc-------cCCCCCCCCcchhhHHHHHHHHhccceeccCCCCcccccccCccccc
Confidence 9996 899965332110 00 11123568999999999999998
Q ss_pred ------------CcccccccccccCCcchHHHHHHHhhchHHHHHHHHHHHHHH--hcCCCCCCCCC
Q 016209 331 ------------NRGVLYADQQLMAGEETGIWVRAYASDVSLFRRDFALAMMKL--SNLRVLTGPMG 383 (393)
Q Consensus 331 ------------~~glL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km--~~lgvltg~~G 383 (393)
+++||+||++|+.|++|+++|++||.|+++||++|++||+|| +++|+++--.|
T Consensus 335 ~~~d~~~~~~~~~~gmL~SD~aL~~Dp~tr~iV~~yA~d~~~Ff~dFA~A~~KL~hrdmgp~~~~~g 401 (409)
T cd00649 335 TVPDAHDPSKKHAPMMLTTDLALRFDPEYEKISRRFLENPDEFADAFAKAWFKLTHRDMGPKSRYLG 401 (409)
T ss_pred cCCCccccccccCcccchhhHhhhcCccHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCchhhhcC
Confidence 568999999999999999999999999999999999999999 68999887665
No 11
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=1.7e-52 Score=444.06 Aligned_cols=271 Identities=20% Similarity=0.224 Sum_probs=222.9
Q ss_pred ccCCCccH-HHHHHHHHHHHHhhC--------CCccchhhhhhhhcccc-------cCCC-ceEEecCCCCCCCcCCCCC
Q 016209 83 YRDSCPQA-EGTIRAMVRYLHKSR--------SDVAPALLRLVFHDCFI-------EGCD-ASILLDDAEGVDSEKKSPP 145 (393)
Q Consensus 83 Y~~sCP~a-e~iVr~~V~~~~~~d--------~~~a~~llRL~FHDCfv-------~GCD-gSiLLd~~~~~~~E~~a~~ 145 (393)
|++-+-.. .+.|+++|++.+... ...+|.+|||+||++.+ |||+ |+|.+. +|++++.
T Consensus 45 y~~~~~~ld~~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf~------P~~sw~~ 118 (716)
T TIGR00198 45 YAEEFQQLDLAAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRFA------PLNSWPD 118 (716)
T ss_pred HHHHhhhccHHHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceecc------cccCchh
Confidence 44444322 356999999999864 47899999999999985 8885 788765 6999999
Q ss_pred CCCc-chhHHHHHHHHHHHhhCCCcccHHHHHHHhhhhhhhhcCCCCcCCCCCccCCCcccc------------------
Q 016209 146 NESL-KGYDVINIIKEELEEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLAFA------------------ 206 (393)
Q Consensus 146 N~~l-rg~~vI~~iK~~le~~cp~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~------------------ 206 (393)
|.+| +++.+++.||+ .||++|||||||+||+++||+.+|||.|+|.+||+|+..+..
T Consensus 119 N~~Ldka~~lL~pIk~----kyp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~~~~~~~ 194 (716)
T TIGR00198 119 NVNLDKARRLLWPIKK----KYGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLTSSREDR 194 (716)
T ss_pred hhhHHHHHHHHHHHHH----HCCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhhcccccc
Confidence 9987 56677776665 789999999999999999999999999999999999943210
Q ss_pred --------c----------ccccCCCCCCCChHHHHHHHHHCCCCcccceEEc-cccccccccccccccccccCCCCCCC
Q 016209 207 --------D----------IATLELPSPNADLSETLASFASRGFDLRETVTLL-GAHSIGVIHCKFFNNRLHNFGRSNEP 267 (393)
Q Consensus 207 --------~----------~a~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLs-GAHTIG~ahc~~f~~Rlynf~g~~~~ 267 (393)
. +....+|+|..++.+|++.|.+||||++|||||+ ||||||++||.+|.+|| ++
T Consensus 195 ~~l~~p~a~~~~Gliyvnpeg~~~lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rl-------g~ 267 (716)
T TIGR00198 195 ESLENPLAATEMGLIYVNPEGPDGHPDPLCTAQDIRTTFARMGMNDEETVALIAGGHTVGKCHGAGPAELI-------GP 267 (716)
T ss_pred ccccccchhhhccccccCcccccCCCCCCCCHHHHHHHHHHcCCChHHHeeeecCceeccccCCCcccccC-------CC
Confidence 0 1112699999999999999999999999999996 99999999999999998 38
Q ss_pred CCCCCHHHHHHHHhhCCCCCCCCCCCCCCccccccccCCCCcccccCCCCCccchHHHHhhhcC----------------
Q 016209 268 DPSLDPDFLNLLRSKCRNISSTSPTPSPPYALLASTFDEPGINVTYDGHQGGFGTVYYRSLLQN---------------- 331 (393)
Q Consensus 268 dp~ld~~y~~~L~~~Cp~~~~~~~~~~~~~~~~p~~f~~~g~~~~~~~Tp~~FDN~Yy~~l~~~---------------- 331 (393)
||++++.|++.|+.+||.+.+... ..+.+ |....++.||.+|||+||+||+.+
T Consensus 268 dP~~~~~~~~gLg~~c~~~~g~g~----dt~~s-------glDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~ 336 (716)
T TIGR00198 268 DPEGAPIEEQGLGWHNQYGKGVGR----DTMTS-------GLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEA 336 (716)
T ss_pred CCCcCHHHHHHhcccCCCCCCCCC----Ccccc-------cCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCceeee
Confidence 999999999999999996432110 00000 111236789999999999999975
Q ss_pred ------------------cccccccccccCCcchHHHHHHHhhchHHHHHHHHHHHHHHhc--CCCCCCC
Q 016209 332 ------------------RGVLYADQQLMAGEETGIWVRAYASDVSLFRRDFALAMMKLSN--LRVLTGP 381 (393)
Q Consensus 332 ------------------~glL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~--lgvltg~ 381 (393)
.++|+||++|..|++|+++|+.||.|+++|+++|++||+||++ +|++.--
T Consensus 337 ~~~~~~~p~~~~~~~~~~~~mL~SDlaL~~Dp~~r~iVe~yA~d~~~F~~dFA~Aw~KL~~~d~gp~~~y 406 (716)
T TIGR00198 337 VDAPEIIPDVEDPNKKHNPIMLDADLALRFDPEFRKISRRFLREPDYFAEAFAKAWFKLTHRDMGPKSRY 406 (716)
T ss_pred cccccccccccccccccccCccchhHHhccCccHHHHHHHHhcCHHHHHHHHHHHHHHHcccccCchhhh
Confidence 6899999999999999999999999999999999999999994 6655433
No 12
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=6.3e-49 Score=414.88 Aligned_cols=271 Identities=20% Similarity=0.261 Sum_probs=224.9
Q ss_pred ccCCCccH-HHHHHHHHHHHHhhC--------CCccchhhhhhhhcccc-------cCCC-ceEEecCCCCCCCcCCCCC
Q 016209 83 YRDSCPQA-EGTIRAMVRYLHKSR--------SDVAPALLRLVFHDCFI-------EGCD-ASILLDDAEGVDSEKKSPP 145 (393)
Q Consensus 83 Y~~sCP~a-e~iVr~~V~~~~~~d--------~~~a~~llRL~FHDCfv-------~GCD-gSiLLd~~~~~~~E~~a~~ 145 (393)
|++-+-.. .+.|+++|++.+... ...+|.+|||+||++.+ |||+ |+|.+. +|++++.
T Consensus 47 y~~~~~~ld~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf~------pe~~w~~ 120 (726)
T PRK15061 47 YAEEFKKLDLEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFA------PLNSWPD 120 (726)
T ss_pred HHHHhchhhHHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccCc------ccccchh
Confidence 44444322 357999999998754 47999999999999985 8996 788764 7999999
Q ss_pred CCCc-chhHHHHHHHHHHHhhCCCcccHHHHHHHhhhhhhhhcCCCCcCCCCCccCCCccccc-----------------
Q 016209 146 NESL-KGYDVINIIKEELEEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLAFAD----------------- 207 (393)
Q Consensus 146 N~~l-rg~~vI~~iK~~le~~cp~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~----------------- 207 (393)
|.+| +++.+++.||+++ |..||+||+|+||+..|||.+|||.|++.+||.|...+...
T Consensus 121 N~gL~ka~~~L~pik~ky----~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~~~~r~~ 196 (726)
T PRK15061 121 NVNLDKARRLLWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWLGGDERYS 196 (726)
T ss_pred hhhHHHHHHHHHHHHHHh----CCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCccccccccccccc
Confidence 9998 6788888888876 45799999999999999999999999999999998654321
Q ss_pred ---------------------ccccCCCCCCCChHHHHHHHHHCCCCcccceEEc-cccccccccccccccccccCCCCC
Q 016209 208 ---------------------IATLELPSPNADLSETLASFASRGFDLRETVTLL-GAHSIGVIHCKFFNNRLHNFGRSN 265 (393)
Q Consensus 208 ---------------------~a~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLs-GAHTIG~ahc~~f~~Rlynf~g~~ 265 (393)
+-...+|+|..++.+|++.|.+||||++|||||+ ||||||++||..|.+||
T Consensus 197 ~~~~l~~pl~a~~mgliyvnpegp~glPdP~~sa~~lR~tF~RMGmnDeEtVALiaGgHT~GkaHca~~~~rl------- 269 (726)
T PRK15061 197 GERDLENPLAAVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGDASHV------- 269 (726)
T ss_pred cccccccchhhhhccceecCCCCCCCCCCcccCHHHHHHHHHHcCCCHHHheeeccCCceeeeCCCcCccccc-------
Confidence 0012379999999999999999999999999995 99999999999999998
Q ss_pred CCCCCCCHHHHHHHH--hhCCCCCCCCCCCCCCccccccccCCCCcccccCCCCCccchHHHHhhhcC------------
Q 016209 266 EPDPSLDPDFLNLLR--SKCRNISSTSPTPSPPYALLASTFDEPGINVTYDGHQGGFGTVYYRSLLQN------------ 331 (393)
Q Consensus 266 ~~dp~ld~~y~~~L~--~~Cp~~~~~~~~~~~~~~~~p~~f~~~g~~~~~~~Tp~~FDN~Yy~~l~~~------------ 331 (393)
++||.+++.|++.|. +.||.+.+..+ +. .|....++.||.+|||+||++|+.+
T Consensus 270 gpdP~~a~~~~qgLgw~~~c~~g~g~dt------~t-------sGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~~ 336 (726)
T PRK15061 270 GPEPEAAPIEEQGLGWKNSYGSGKGADT------IT-------SGLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAGAW 336 (726)
T ss_pred CCCCCcCHHHHHhccccccCCCCCCCCC------cc-------ccCCCCCCCCcchhhHHHHHHHhhCcceeccCCCccc
Confidence 479999999999996 89996433211 00 0122236789999999999999985
Q ss_pred ------------------------cccccccccccCCcchHHHHHHHhhchHHHHHHHHHHHHHHhc--CCCCCCCCC
Q 016209 332 ------------------------RGVLYADQQLMAGEETGIWVRAYASDVSLFRRDFALAMMKLSN--LRVLTGPMG 383 (393)
Q Consensus 332 ------------------------~glL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~--lgvltg~~G 383 (393)
.+||+||++|..|++++++|++||.|+++|+++|++||.||.+ +|+++--.|
T Consensus 337 qw~~~~~~~~~~~pd~~~~~~~~~~~MLtSD~AL~~DP~~r~iV~~fA~d~~~F~~~FA~A~~KL~hrdmgp~~ry~g 414 (726)
T PRK15061 337 QWVPKDGAAEDTVPDAHDPSKKHAPTMLTTDLALRFDPEYEKISRRFLENPEEFADAFARAWFKLTHRDMGPKSRYLG 414 (726)
T ss_pred cccccCccccccCCcccccccccCcccccccHHhhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHcccCCCchhhhcC
Confidence 5899999999999999999999999999999999999999954 666654443
No 13
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=4.1e-49 Score=377.94 Aligned_cols=214 Identities=23% Similarity=0.308 Sum_probs=178.0
Q ss_pred HHHHhhCCCccchhhhhhhhccc-------ccCCCceEEecCCCCCCCcCC-CCCCCCcchhHHHHHHHHHHHhhCCCcc
Q 016209 99 RYLHKSRSDVAPALLRLVFHDCF-------IEGCDASILLDDAEGVDSEKK-SPPNESLKGYDVINIIKEELEEICPGVV 170 (393)
Q Consensus 99 ~~~~~~d~~~a~~llRL~FHDCf-------v~GCDgSiLLd~~~~~~~E~~-a~~N~~lrg~~vI~~iK~~le~~cp~~V 170 (393)
..+...+++++++||||+||||| ++||||||+++. ..+|+. .+.|.++++|+.|+.+ +|
T Consensus 32 ~~~~~~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIlle~---~~~En~G~~~n~~l~~~~~i~~~----------~V 98 (264)
T cd08201 32 DCAPGPGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQYEL---DRPENIGSGFNTTLNFFVNFYSP----------RS 98 (264)
T ss_pred ccCcCCCccHHHHHHHHHHHhhcCcccCCCCCCCCcceeecC---CChhhccCchhhccccceeeccC----------cc
Confidence 34455789999999999999999 899999999974 247887 5567788999887654 59
Q ss_pred cHHHHHHHhhhhhhhhcCCCCcCCCCCccCCCcccccccccCCCCCCCChHHHHHHHHHCCCCcccceEEcc-ccccccc
Q 016209 171 SCADILALAAREGVVLAGGPFYPLYTGRKDSRLAFADIATLELPSPNADLSETLASFASRGFDLRETVTLLG-AHSIGVI 249 (393)
Q Consensus 171 ScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~a~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLsG-AHTIG~a 249 (393)
|||||||||||+||+.+|||.|+|++||+|++.+.+. .||.|+.++++|++.|+++||+++|||+|+| |||||++
T Consensus 99 ScADiialAa~~AV~~~GGP~i~v~~GR~Da~~s~~~----glP~P~~~v~~l~~~Fa~~Gfs~~DmVaLsggaHTiG~a 174 (264)
T cd08201 99 SMADLIAMGVVTSVASCGGPVVPFRAGRIDATEAGQA----GVPEPQTDLGTTTESFRRQGFSTSEMIALVACGHTLGGV 174 (264)
T ss_pred CHHHHHHHHHHHHHHHcCCCeecccccCCCccccccc----cCCCCccCHHHHHHHHHHcCCChHHHheeecCCeeeeec
Confidence 9999999999999999999999999999999987643 4999999999999999999999999999996 9999999
Q ss_pred cccccccccccCCCCCCCCCCCCHHHHHHHHhhCCCCCCCCCCCCCCccccccccCCCCcccccCCCCCccchHHHHhhh
Q 016209 250 HCKFFNNRLHNFGRSNEPDPSLDPDFLNLLRSKCRNISSTSPTPSPPYALLASTFDEPGINVTYDGHQGGFGTVYYRSLL 329 (393)
Q Consensus 250 hc~~f~~Rlynf~g~~~~dp~ld~~y~~~L~~~Cp~~~~~~~~~~~~~~~~p~~f~~~g~~~~~~~Tp~~FDN~Yy~~l~ 329 (393)
||..|.++.-. ++. + + .+ .+++.||.+|||+||.+++
T Consensus 175 hc~~f~~~~~~--------g~~------------~-----~----------------~~--~p~dstp~~FDn~~f~E~l 211 (264)
T cd08201 175 HSEDFPEIVPP--------GSV------------P-----D----------------TV--LQFFDTTIQFDNKVVTEYL 211 (264)
T ss_pred ccccchhhcCC--------ccc------------c-----C----------------CC--CCCCCCccccchHHHHHHh
Confidence 99988765310 000 0 0 00 1278899999999999999
Q ss_pred cCcc----------cccccccccCCcchHHHHHHHhhchHHHHHHHHHHHHHHhc
Q 016209 330 QNRG----------VLYADQQLMAGEETGIWVRAYASDVSLFRRDFALAMMKLSN 374 (393)
Q Consensus 330 ~~~g----------lL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~ 374 (393)
.+.. .+.||..+++.+.-. .++..| +++.|.+.++..+.||.+
T Consensus 212 ~g~~~~~L~~~~~~~~~sd~r~f~~d~n~-t~~~l~-~~~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 212 SGTTNNPLVVGPNNTTNSDLRIFSSDGNV-TMNELA-SPDTFQKTCADILQRMID 264 (264)
T ss_pred cCCCCCceeecCCCCccchhhheecCccH-HHHHhc-ChHHHHHHHHHHHHHHhC
Confidence 8753 468999999876543 456677 799999999999999964
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=7.6e-39 Score=310.65 Aligned_cols=219 Identities=22% Similarity=0.245 Sum_probs=177.6
Q ss_pred HHHHHHhhCCCccchhhhhhhhcccc-------cCCCce-EEecCCCCCCCcCCCCCCCC--c-chhHHHHHHHHHHHhh
Q 016209 97 MVRYLHKSRSDVAPALLRLVFHDCFI-------EGCDAS-ILLDDAEGVDSEKKSPPNES--L-KGYDVINIIKEELEEI 165 (393)
Q Consensus 97 ~V~~~~~~d~~~a~~llRL~FHDCfv-------~GCDgS-iLLd~~~~~~~E~~a~~N~~--l-rg~~vI~~iK~~le~~ 165 (393)
.+++.+....-.++.||||+||++.+ |||+|+ |.|. +|++++.|.+ | +.+.+++.||+++...
T Consensus 18 ~lk~~i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl~------pe~~w~~N~~~~L~~~~~~Le~ik~~~~~~ 91 (297)
T cd08200 18 ALKAKILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRLA------PQKDWEVNEPEELAKVLAVLEGIQKEFNES 91 (297)
T ss_pred HHHHHHHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccCc------cccCcCccCcHHHHHHHHHHHHHHHHhccc
Confidence 56667777778899999999999984 899998 7664 7999999998 7 6788999999887421
Q ss_pred -CC-CcccHHHHHHHhhhhhhhhcCC-----CCcCCCCCccCCCccccccc--ccCCCCCC------------CChHHHH
Q 016209 166 -CP-GVVSCADILALAAREGVVLAGG-----PFYPLYTGRKDSRLAFADIA--TLELPSPN------------ADLSETL 224 (393)
Q Consensus 166 -cp-~~VScADilalAardAV~~~GG-----P~~~v~~GR~D~~~s~~~~a--~~~LP~p~------------~~~~~l~ 224 (393)
-+ ..||+||+|+||+..|||.+|| |.|++.+||.|......... ...+|.+. ...+.|+
T Consensus 92 ~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~~~~~~~~~~~Lr 171 (297)
T cd08200 92 QSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLKKGYRVPPEEMLV 171 (297)
T ss_pred ccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccccCCCCcccccccccCCCCCHHHHHH
Confidence 11 2699999999999999999999 99999999999987533211 12345432 1347899
Q ss_pred HHHHHCCCCcccceEEcccc-ccccccccccccccccCCCCCCCCCCCCHHHHHHHHhhCCCCCCCCCCCCCCccccccc
Q 016209 225 ASFASRGFDLRETVTLLGAH-SIGVIHCKFFNNRLHNFGRSNEPDPSLDPDFLNLLRSKCRNISSTSPTPSPPYALLAST 303 (393)
Q Consensus 225 ~~F~~~Gl~~~dlVaLsGAH-TIG~ahc~~f~~Rlynf~g~~~~dp~ld~~y~~~L~~~Cp~~~~~~~~~~~~~~~~p~~ 303 (393)
+.|.++|||++|||||+||| ++|++|..++ .
T Consensus 172 d~f~rlglsd~EmvaL~Gg~r~lG~~~~~s~-------~----------------------------------------- 203 (297)
T cd08200 172 DKAQLLTLTAPEMTVLVGGLRVLGANYGGSK-------H----------------------------------------- 203 (297)
T ss_pred HHHHhCCCChHHHhheecchhhcccCCCCCC-------C-----------------------------------------
Confidence 99999999999999999998 7998774321 0
Q ss_pred cCCCCcccccCCCCCccchHHHHhhhcCc--------------------c-----cccccccccCCcchHHHHHHHhhc-
Q 016209 304 FDEPGINVTYDGHQGGFGTVYYRSLLQNR--------------------G-----VLYADQQLMAGEETGIWVRAYASD- 357 (393)
Q Consensus 304 f~~~g~~~~~~~Tp~~FDN~Yy~~l~~~~--------------------g-----lL~SD~~L~~d~~t~~~V~~yA~d- 357 (393)
| .|+.+|.+|||.||+||+... | .+++|.+|..|++.|++|+.||.|
T Consensus 204 ----G---~wT~~p~~f~N~fF~nLLd~~~~W~~~~~~~~~~~~~dr~~g~~~~~~t~~Dl~l~sd~~~R~~ve~YA~dd 276 (297)
T cd08200 204 ----G---VFTDRPGVLTNDFFVNLLDMSTEWKPADEDDGLFEGRDRKTGEVKWTATRVDLVFGSNSELRAVAEVYASDD 276 (297)
T ss_pred ----C---CCcCCCCccccHHHHHHhcccceeeecCCCCCceeeccCCCCceeeccChhhhhhccCHHHHHHHHHHhccc
Confidence 1 156778999999999998410 1 378899999999999999999998
Q ss_pred -hHHHHHHHHHHHHHHhcCC
Q 016209 358 -VSLFRRDFALAMMKLSNLR 376 (393)
Q Consensus 358 -~~~F~~~Fa~Am~Km~~lg 376 (393)
+++|++||++||.||+++.
T Consensus 277 ~~~~F~~DF~~A~~Klmeld 296 (297)
T cd08200 277 AQEKFVKDFVAAWTKVMNLD 296 (297)
T ss_pred chhHHHHHHHHHHHHHHhcC
Confidence 9999999999999999875
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=9.5e-34 Score=301.37 Aligned_cols=220 Identities=24% Similarity=0.277 Sum_probs=175.2
Q ss_pred HHHHHHHHHH---HhhCCCccchhhhhhhhcccc-------cCCCce-EEecCCCCCCCcCCCCCC--CCc-chhHHHHH
Q 016209 92 GTIRAMVRYL---HKSRSDVAPALLRLVFHDCFI-------EGCDAS-ILLDDAEGVDSEKKSPPN--ESL-KGYDVINI 157 (393)
Q Consensus 92 ~iVr~~V~~~---~~~d~~~a~~llRL~FHDCfv-------~GCDgS-iLLd~~~~~~~E~~a~~N--~~l-rg~~vI~~ 157 (393)
++|+++|+++ +....-..+.|||++||++.+ ||++|+ |.|. +|++++.| .+| +.+.+++.
T Consensus 428 ~~v~~di~~lk~~i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~------pe~~w~~N~p~gL~~vl~~Le~ 501 (716)
T TIGR00198 428 TLSEGDIKELKQQILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLE------PQKNWPVNEPTRLAKVLAVLEK 501 (716)
T ss_pred hhHHHHHHHHHHHHHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecc------hhcCcccCCHHHHHHHHHHHHH
Confidence 3456676664 345567789999999999984 899998 7775 69999999 677 67888888
Q ss_pred HHHHHHhhCCCcccHHHHHHHhhhhhhhhc---CCC--CcCCCCCccCCCcccccccccCCCC-C--------------C
Q 016209 158 IKEELEEICPGVVSCADILALAAREGVVLA---GGP--FYPLYTGRKDSRLAFADIATLELPS-P--------------N 217 (393)
Q Consensus 158 iK~~le~~cp~~VScADilalAardAV~~~---GGP--~~~v~~GR~D~~~s~~~~a~~~LP~-p--------------~ 217 (393)
||+++.. ..||+||+|+||+..|||.+ ||| .+++.+||.|...... +++...|. | .
T Consensus 502 Ik~~f~~---~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~t-d~~~~~~l~p~adgfRn~~~~~~~~ 577 (716)
T TIGR00198 502 IQAEFAK---GPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMT-DAESFTPLEPIADGFRNYLKRDYAV 577 (716)
T ss_pred HHHHcCC---CcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCC-CccccccCCCCCcccchhccccccC
Confidence 8887742 26999999999999999988 898 5789999999987643 23333321 1 1
Q ss_pred CChHHHHHHHHHCCCCcccceEEccc-cccccccccccccccccCCCCCCCCCCCCHHHHHHHHhhCCCCCCCCCCCCCC
Q 016209 218 ADLSETLASFASRGFDLRETVTLLGA-HSIGVIHCKFFNNRLHNFGRSNEPDPSLDPDFLNLLRSKCRNISSTSPTPSPP 296 (393)
Q Consensus 218 ~~~~~l~~~F~~~Gl~~~dlVaLsGA-HTIG~ahc~~f~~Rlynf~g~~~~dp~ld~~y~~~L~~~Cp~~~~~~~~~~~~ 296 (393)
.....|++.|.++|||++|||||+|| |++|++|..++ .
T Consensus 578 ~~~~~l~d~a~~lglt~~EmvaL~Gg~r~lG~~~~~s~-------~---------------------------------- 616 (716)
T TIGR00198 578 TPEELLLDKAQLLTLTAPEMTVLIGGMRVLGANHGGSK-------H---------------------------------- 616 (716)
T ss_pred CHHHHHHHHHHhCCCChHHHHheecchhhccccCCCCC-------C----------------------------------
Confidence 23456899999999999999999999 59999885321 0
Q ss_pred ccccccccCCCCcccccCCCCCccchHHHHhhhcCc--------------------c---c--ccccccccCCcchHHHH
Q 016209 297 YALLASTFDEPGINVTYDGHQGGFGTVYYRSLLQNR--------------------G---V--LYADQQLMAGEETGIWV 351 (393)
Q Consensus 297 ~~~~p~~f~~~g~~~~~~~Tp~~FDN~Yy~~l~~~~--------------------g---l--L~SD~~L~~d~~t~~~V 351 (393)
|+ ++.+|.+|||.||+||+... | + +.+|.+|..|++.|++|
T Consensus 617 -----------G~---~T~~p~~f~NdfF~~LLd~~~~w~~~~~~~~~~~~~dr~tg~~~~~~t~~Dl~~~sd~~lra~a 682 (716)
T TIGR00198 617 -----------GV---FTDRVGVLSNDFFVNLLDMAYEWRAADNNRYLFEGGDRQTGEVKWTATRVDLVFGSNSILRAVA 682 (716)
T ss_pred -----------CC---CcCCCCccccHHHHHHhcCCceeeecCCCCceeeeecCCCCceeeccChhheeeccCHHHHHHH
Confidence 11 55678999999999998621 1 2 37899999999999999
Q ss_pred HHHhhch--HHHHHHHHHHHHHHhcCC
Q 016209 352 RAYASDV--SLFRRDFALAMMKLSNLR 376 (393)
Q Consensus 352 ~~yA~d~--~~F~~~Fa~Am~Km~~lg 376 (393)
+.||+|+ ++|++||++||.||++++
T Consensus 683 E~YA~dd~~~~F~~DF~~Aw~Klm~ld 709 (716)
T TIGR00198 683 EVYAQDDAREKFVKDFVAAWTKVMNLD 709 (716)
T ss_pred HHHhcccccchHHHHHHHHHHHHHhCC
Confidence 9999997 899999999999999987
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=3.1e-33 Score=296.03 Aligned_cols=218 Identities=22% Similarity=0.245 Sum_probs=177.8
Q ss_pred HHHHHHhhCCCccchhhhhhhhcccc-------cCCCce-EEecCCCCCCCcCCCCCCC--Cc-chhHHHHHHHHHHHhh
Q 016209 97 MVRYLHKSRSDVAPALLRLVFHDCFI-------EGCDAS-ILLDDAEGVDSEKKSPPNE--SL-KGYDVINIIKEELEEI 165 (393)
Q Consensus 97 ~V~~~~~~d~~~a~~llRL~FHDCfv-------~GCDgS-iLLd~~~~~~~E~~a~~N~--~l-rg~~vI~~iK~~le~~ 165 (393)
.+++.+....-..+.|||++||++.+ ||++|+ |.|. +|++++.|. +| +.+++++.||++....
T Consensus 443 ~lk~~i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~------Pq~~w~~N~p~~L~~vl~~LE~Ik~~f~~~ 516 (726)
T PRK15061 443 ALKAKILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLA------PQKDWEVNEPAQLAKVLAVLEGIQAEFNAA 516 (726)
T ss_pred HHHHHHHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecc------cccCccccCHHHHHHHHHHHHHHHHHHhhc
Confidence 45666666677889999999999984 899998 8775 699999998 77 6889999999998543
Q ss_pred C--CCcccHHHHHHHhhhhhhhhc---CC--CCcCCCCCccCCCcccccccc---cCCCCCC------------CChHHH
Q 016209 166 C--PGVVSCADILALAAREGVVLA---GG--PFYPLYTGRKDSRLAFADIAT---LELPSPN------------ADLSET 223 (393)
Q Consensus 166 c--p~~VScADilalAardAV~~~---GG--P~~~v~~GR~D~~~s~~~~a~---~~LP~p~------------~~~~~l 223 (393)
- ...||+||+|+||+..|||.+ || |.+++.+||.|...... +++ ..+|.++ .....|
T Consensus 517 ~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~t-d~esf~~l~P~Adgfrny~~~~~~~~~e~~L 595 (726)
T PRK15061 517 QSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQT-DVESFAVLEPKADGFRNYLKKGYSVSPEELL 595 (726)
T ss_pred cCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCC-CcccccccCCCCccccccccccCCCCHHHHH
Confidence 1 125999999999999999988 68 99999999999987532 222 2457543 123789
Q ss_pred HHHHHHCCCCcccceEEcccc-ccccccccccccccccCCCCCCCCCCCCHHHHHHHHhhCCCCCCCCCCCCCCcccccc
Q 016209 224 LASFASRGFDLRETVTLLGAH-SIGVIHCKFFNNRLHNFGRSNEPDPSLDPDFLNLLRSKCRNISSTSPTPSPPYALLAS 302 (393)
Q Consensus 224 ~~~F~~~Gl~~~dlVaLsGAH-TIG~ahc~~f~~Rlynf~g~~~~dp~ld~~y~~~L~~~Cp~~~~~~~~~~~~~~~~p~ 302 (393)
++.|.++|||++|||||+||| ++|++|-.++ .
T Consensus 596 ~d~a~~lglt~~EmvaL~Gg~r~Lg~~~~~S~-------~---------------------------------------- 628 (726)
T PRK15061 596 VDKAQLLTLTAPEMTVLVGGLRVLGANYGGSK-------H---------------------------------------- 628 (726)
T ss_pred HHHHHhCCCChHHHhheecchhhcccCCCCCC-------C----------------------------------------
Confidence 999999999999999999997 7888774321 0
Q ss_pred ccCCCCcccccCCCCCccchHHHHhhhcC----------c----------c-----cccccccccCCcchHHHHHHHhhc
Q 016209 303 TFDEPGINVTYDGHQGGFGTVYYRSLLQN----------R----------G-----VLYADQQLMAGEETGIWVRAYASD 357 (393)
Q Consensus 303 ~f~~~g~~~~~~~Tp~~FDN~Yy~~l~~~----------~----------g-----lL~SD~~L~~d~~t~~~V~~yA~d 357 (393)
|+ ++..|.+|||.||+||+.. . | .+.+|..|..|++.|++|+.||+|
T Consensus 629 -----G~---~T~~p~~fsNdfFvnLLdm~~~W~~~~~~~~~ye~~Dr~tg~~~~~~t~~Dlvfgsds~lRa~aEvYA~d 700 (726)
T PRK15061 629 -----GV---FTDRPGVLTNDFFVNLLDMGTEWKPTDEDEEVYEGRDRKTGEVKWTATRVDLVFGSNSQLRALAEVYASD 700 (726)
T ss_pred -----CC---CcCCCCccccHHHHHHhcCCceeeecCCCCCceeeccCCCcceeeccChhheecccCHHHHHHHHHHhcc
Confidence 11 5667899999999999841 0 1 158899999999999999999999
Q ss_pred --hHHHHHHHHHHHHHHhcCC
Q 016209 358 --VSLFRRDFALAMMKLSNLR 376 (393)
Q Consensus 358 --~~~F~~~Fa~Am~Km~~lg 376 (393)
+++|++||++||.|+++++
T Consensus 701 d~~~kF~~DF~~Aw~Kvmeld 721 (726)
T PRK15061 701 DAKEKFVRDFVAAWTKVMNLD 721 (726)
T ss_pred cchhHHHHHHHHHHHHHHhCC
Confidence 9999999999999999987
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.96 E-value=3.6e-29 Score=254.76 Aligned_cols=255 Identities=20% Similarity=0.254 Sum_probs=195.9
Q ss_pred HHHHHHHHHHhhC--------CCccchhhhhhhhcccc-------cCCCceEEecCCCCCCCcCCCCCCCCc-chhHHHH
Q 016209 93 TIRAMVRYLHKSR--------SDVAPALLRLVFHDCFI-------EGCDASILLDDAEGVDSEKKSPPNESL-KGYDVIN 156 (393)
Q Consensus 93 iVr~~V~~~~~~d--------~~~a~~llRL~FHDCfv-------~GCDgSiLLd~~~~~~~E~~a~~N~~l-rg~~vI~ 156 (393)
.|++.++..+... ...+|.+|||+||-+.+ +|..+. .-++.++.++|.|.+| +++.++.
T Consensus 71 Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGTYRi~DGRGGa~~G-----~qRFaPlnSWPDN~nLDKarRLLW 145 (730)
T COG0376 71 AVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRIGDGRGGAGGG-----QQRFAPLNSWPDNANLDKARRLLW 145 (730)
T ss_pred HHHHHHHHHhhcccccCcccccccccceeeeeecccCceecccCCCCCCCC-----ceecccccCCCcccchHHHHHHhh
Confidence 4555666665542 35899999999999975 444331 1245678999999998 7999999
Q ss_pred HHHHHHHhhCCCcccHHHHHHHhhhhhhhhcCCCCcCCCCCccCCCccccc-----------------------------
Q 016209 157 IIKEELEEICPGVVSCADILALAAREGVVLAGGPFYPLYTGRKDSRLAFAD----------------------------- 207 (393)
Q Consensus 157 ~iK~~le~~cp~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~----------------------------- 207 (393)
.||+++ ++.+|.||+++||+..|++.+|++.+.+..||.|-..+..+
T Consensus 146 PIKkKY----G~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~Plaavq 221 (730)
T COG0376 146 PIKKKY----GRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAAVQ 221 (730)
T ss_pred hHhHhh----cccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchhhhe
Confidence 999877 56899999999999999999999999999999998766540
Q ss_pred --------ccccCCCCCCCChHHHHHHHHHCCCCcccceEEcc-ccccccccccccccccccCCCCCCCCCCCCHHHHHH
Q 016209 208 --------IATLELPSPNADLSETLASFASRGFDLRETVTLLG-AHSIGVIHCKFFNNRLHNFGRSNEPDPSLDPDFLNL 278 (393)
Q Consensus 208 --------~a~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLsG-AHTIG~ahc~~f~~Rlynf~g~~~~dp~ld~~y~~~ 278 (393)
+-.+..|+|..+..+++..|+||++|++|.|||++ |||+|.+|...-.+ .-+|+|.-.+--.+-
T Consensus 222 MGLIYVNPEGpng~PDpl~aA~dIRetFaRMaMNDeETVALiaGGHtfGKtHGag~a~-------~vg~ePe~a~ie~qG 294 (730)
T COG0376 222 MGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPAS-------NVGPEPEAAPIEQQG 294 (730)
T ss_pred eeeEEeCCCCCCCCCChhhhHHHHHHHHHHhcCCcHhhhhhhhcccccccccCCCchh-------hcCCCccccchhhhc
Confidence 11245899999999999999999999999999996 99999999764211 124566433322222
Q ss_pred HH--hhCCCCCCCCCCCCCCccccccccCCCCcccccCCCCCccchHHHHhhhcC-------------------------
Q 016209 279 LR--SKCRNISSTSPTPSPPYALLASTFDEPGINVTYDGHQGGFGTVYYRSLLQN------------------------- 331 (393)
Q Consensus 279 L~--~~Cp~~~~~~~~~~~~~~~~p~~f~~~g~~~~~~~Tp~~FDN~Yy~~l~~~------------------------- 331 (393)
|- +.|-.+.+.+. +. .|+++.++.||++|||+||.+|+..
T Consensus 295 lGW~~~~g~G~G~dt------it-------sGlE~~Wt~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~p 361 (730)
T COG0376 295 LGWANTYGSGKGPDT------IT-------SGLEGAWTTTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIP 361 (730)
T ss_pred cccccccCCCcCccc------cc-------ccccccCCCCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCC
Confidence 22 12222221110 11 2455668899999999999999852
Q ss_pred ----------cccccccccccCCcchHHHHHHHhhchHHHHHHHHHHHHHHhcCC
Q 016209 332 ----------RGVLYADQQLMAGEETGIWVRAYASDVSLFRRDFALAMMKLSNLR 376 (393)
Q Consensus 332 ----------~glL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lg 376 (393)
-.||.+|.+|..||..+.+.++|..|++.|.+.|++||.||.+-+
T Consensus 362 d~~dp~~~~~p~MlttDlaLr~DP~Y~kIs~rf~e~pd~F~~~FArAWfKLtHRD 416 (730)
T COG0376 362 DAHDPSKKHGPMMLTTDLALRFDPEYEKISRRFLEDPDEFADAFARAWFKLTHRD 416 (730)
T ss_pred CCCCcccccCceeeccchhhhcChHHHHHHHHHHhCHHHHHHHHHHHHHHHhhcc
Confidence 148999999999999999999999999999999999999998744
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.35 E-value=9.1e-12 Score=128.41 Aligned_cols=214 Identities=24% Similarity=0.296 Sum_probs=151.6
Q ss_pred HHHHHHhhCCCccchhhhhhhhcccc-------cCCCc-eEEecCCCCCCCcCCCCCCCC--c-chhHHHHHHHHHHHhh
Q 016209 97 MVRYLHKSRSDVAPALLRLVFHDCFI-------EGCDA-SILLDDAEGVDSEKKSPPNES--L-KGYDVINIIKEELEEI 165 (393)
Q Consensus 97 ~V~~~~~~d~~~a~~llRL~FHDCfv-------~GCDg-SiLLd~~~~~~~E~~a~~N~~--l-rg~~vI~~iK~~le~~ 165 (393)
.++..+.+..-....|+-.+|-.+-+ +|.+| -|.|. +.++++.|.. | +-+.+++.|.+...
T Consensus 453 ~lK~~IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLa------PqkdWevN~P~~l~kvl~~le~iq~~fn-- 524 (730)
T COG0376 453 ALKAKILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLA------PQKDWEVNQPAELAKVLAVLEKIQKEFN-- 524 (730)
T ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeec------ccccCCCCCHHHHHHHHHHHHHHHHHhc--
Confidence 34555566666777899999988853 67777 56665 5799999975 4 56788888888886
Q ss_pred CCCcccHHHHHHHhhhhhhhh---cCCCC--cCCCCCccCCCccccccccc--CC-CCC------------CCChHHHHH
Q 016209 166 CPGVVSCADILALAAREGVVL---AGGPF--YPLYTGRKDSRLAFADIATL--EL-PSP------------NADLSETLA 225 (393)
Q Consensus 166 cp~~VScADilalAardAV~~---~GGP~--~~v~~GR~D~~~s~~~~a~~--~L-P~p------------~~~~~~l~~ 225 (393)
..||.||+|+|++..||+. .+|-. +++.+||.|+...... ++. .| |-. ...-.-|++
T Consensus 525 --kkvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtD-v~sf~~LeP~aDGfRNy~~~~~~~~pe~~LvD 601 (730)
T COG0376 525 --KKVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTD-VESFAVLEPIADGFRNYVKKDYVLTPEELLVD 601 (730)
T ss_pred --CccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhcc-hhhhhcccccchhhhhhccCCCcCCHHHHHHH
Confidence 3699999999999999985 46654 5667999999764322 111 11 211 112344778
Q ss_pred HHHHCCCCcccceEEcccc-ccccccccccccccccCCCCCCCCCCCCHHHHHHHHhhCCCCCCCCCCCCCCcccccccc
Q 016209 226 SFASRGFDLRETVTLLGAH-SIGVIHCKFFNNRLHNFGRSNEPDPSLDPDFLNLLRSKCRNISSTSPTPSPPYALLASTF 304 (393)
Q Consensus 226 ~F~~~Gl~~~dlVaLsGAH-TIG~ahc~~f~~Rlynf~g~~~~dp~ld~~y~~~L~~~Cp~~~~~~~~~~~~~~~~p~~f 304 (393)
.=+-.+|+.-||++|+||- -+|.-+ .|+
T Consensus 602 kAqlL~LtapemtVLiGGlRvLg~n~-----------g~s---------------------------------------- 630 (730)
T COG0376 602 KAQLLTLTAPEMTVLIGGLRVLGANY-----------GGS---------------------------------------- 630 (730)
T ss_pred HHHHhccCCccceEEEcceEeeccCC-----------CCC----------------------------------------
Confidence 8888999999999999975 444321 110
Q ss_pred CCCCcccccCCCCCccchHHHHhhhcC----------c----------c-----cccccccccCCcchHHHHHHHhhc--
Q 016209 305 DEPGINVTYDGHQGGFGTVYYRSLLQN----------R----------G-----VLYADQQLMAGEETGIWVRAYASD-- 357 (393)
Q Consensus 305 ~~~g~~~~~~~Tp~~FDN~Yy~~l~~~----------~----------g-----lL~SD~~L~~d~~t~~~V~~yA~d-- 357 (393)
+.|| ++..|....|.||.||+.- + | --..|..+-.+++.|.+.+.||+|
T Consensus 631 -~~GV---fT~~pg~LtndFFvnLlDM~~~W~~~~~~~~~feg~DrktG~~kwt~trvDLvfGsns~LRA~aEVYa~dda 706 (730)
T COG0376 631 -KHGV---FTDRPGVLTNDFFVNLLDMGTEWKPTDDARGLFEGRDRKTGEVKWTATRVDLVFGSNSELRALAEVYASDDA 706 (730)
T ss_pred -ccce---eccCcccccchhhhhhhhccceeeeccccccceeccccccCceEeeeeEEeEEecCcHHHHHHHHHHhccch
Confidence 0122 3456677777777777641 1 2 236677777889999999999985
Q ss_pred hHHHHHHHHHHHHHHhcCC
Q 016209 358 VSLFRRDFALAMMKLSNLR 376 (393)
Q Consensus 358 ~~~F~~~Fa~Am~Km~~lg 376 (393)
+++|.+||+.||.|..++.
T Consensus 707 ~ekFv~DFvaaw~kVMn~D 725 (730)
T COG0376 707 KEKFVKDFVAAWTKVMNLD 725 (730)
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 8889999999999999875
No 19
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=58.34 E-value=6.3 Score=23.29 Aligned_cols=17 Identities=53% Similarity=0.792 Sum_probs=11.2
Q ss_pred CccchHHHHHHHHHhhhcc
Q 016209 1 MMRRVSFLVFLLCIVISFK 19 (393)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (393)
||+-++.||.+ ++|||.
T Consensus 1 MMk~vIIlvvL--LliSf~ 17 (19)
T PF13956_consen 1 MMKLVIILVVL--LLISFP 17 (19)
T ss_pred CceehHHHHHH--Hhcccc
Confidence 78877766655 456664
No 20
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=41.47 E-value=23 Score=28.85 Aligned_cols=18 Identities=33% Similarity=0.353 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHhcCCC
Q 016209 360 LFRRDFALAMMKLSNLRV 377 (393)
Q Consensus 360 ~F~~~Fa~Am~Km~~lgv 377 (393)
...++|..||.||+.||-
T Consensus 2 ~m~~~F~~am~KlavLG~ 19 (80)
T PF11895_consen 2 KMQSAFKAAMAKLAVLGH 19 (80)
T ss_dssp HHHHHHHHHHHHHCTTTS
T ss_pred hHHHHHHHHHHHHHHhcC
Confidence 356799999999998874
No 21
>PTZ00411 transaldolase-like protein; Provisional
Probab=38.12 E-value=92 Score=31.80 Aligned_cols=65 Identities=14% Similarity=0.219 Sum_probs=35.8
Q ss_pred ccHHHHHHHhhhhhh--hhcCCCCcCCCCCccCCCcccccccccCCCCC---CCChHHHHHHHHHCCCCc
Q 016209 170 VSCADILALAAREGV--VLAGGPFYPLYTGRKDSRLAFADIATLELPSP---NADLSETLASFASRGFDL 234 (393)
Q Consensus 170 VScADilalAardAV--~~~GGP~~~v~~GR~D~~~s~~~~a~~~LP~p---~~~~~~l~~~F~~~Gl~~ 234 (393)
|.|-=-+.+....|+ ..+|-..+..+.||.|..--.+.......+.. -..+.++...|++.|+..
T Consensus 161 I~~N~TlvFS~~QA~aaaeAGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T 230 (333)
T PTZ00411 161 IHCNLTLLFSFAQAVACAQAGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKT 230 (333)
T ss_pred CceeEeEecCHHHHHHHHHcCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCe
Confidence 444333344444443 34577888999999865422111111111211 235677888899999875
No 22
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=35.18 E-value=28 Score=30.98 Aligned_cols=34 Identities=26% Similarity=0.488 Sum_probs=27.7
Q ss_pred CCChHHHHHHHHHCCCCcccc-eEEcccccccccc
Q 016209 217 NADLSETLASFASRGFDLRET-VTLLGAHSIGVIH 250 (393)
Q Consensus 217 ~~~~~~l~~~F~~~Gl~~~dl-VaLsGAHTIG~ah 250 (393)
.+++.+.+-.|++|||++.++ |.|--+|-||++.
T Consensus 30 ~ddvkeqI~K~akKGltpsqIGviLRDshGi~q~r 64 (151)
T KOG0400|consen 30 ADDVKEQIYKLAKKGLTPSQIGVILRDSHGIGQVR 64 (151)
T ss_pred HHHHHHHHHHHHHcCCChhHceeeeecccCcchhh
Confidence 345677788999999999998 6666799999875
No 23
>CHL00038 psbL photosystem II protein L
Probab=34.55 E-value=29 Score=24.19 Aligned_cols=12 Identities=33% Similarity=0.788 Sum_probs=10.2
Q ss_pred HHHHHHHHHhhh
Q 016209 6 SFLVFLLCIVIS 17 (393)
Q Consensus 6 ~~~~~~~~~~~~ 17 (393)
.+|||+++++||
T Consensus 22 LLlifvl~vlfs 33 (38)
T CHL00038 22 LLLIFVLAVLFS 33 (38)
T ss_pred HHHHHHHHHHHH
Confidence 478999999987
No 24
>PF10829 DUF2554: Protein of unknown function (DUF2554); InterPro: IPR020117 This entry contains proteins with no known function.
Probab=30.49 E-value=32 Score=27.41 Aligned_cols=17 Identities=24% Similarity=0.553 Sum_probs=15.0
Q ss_pred CccchHHHHHHHHHhhh
Q 016209 1 MMRRVSFLVFLLCIVIS 17 (393)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (393)
|++|.+-+++++|-|||
T Consensus 1 M~~k~lS~~lL~caLFS 17 (76)
T PF10829_consen 1 MFKKGLSALLLICALFS 17 (76)
T ss_pred ChHHHHHHHHHHHHHhc
Confidence 78898889999999986
No 25
>PRK09810 entericidin A; Provisional
Probab=27.86 E-value=43 Score=23.91 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=12.7
Q ss_pred CccchHHHHHHHHHhhhc
Q 016209 1 MMRRVSFLVFLLCIVISF 18 (393)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (393)
||+|.++++++..++.+=
T Consensus 1 mMkk~~~l~~~~~~~L~a 18 (41)
T PRK09810 1 MMKRLIVLVLLASTLLTG 18 (41)
T ss_pred ChHHHHHHHHHHHHHHhh
Confidence 899988887665555543
No 26
>PLN02161 beta-amylase
Probab=22.57 E-value=1.1e+02 Score=33.21 Aligned_cols=34 Identities=24% Similarity=0.416 Sum_probs=23.9
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHh-----cCCCCCCCCCeecc
Q 016209 350 WVRAYASDVSLFRRDFALAMMKLS-----NLRVLTGPMGQIRL 387 (393)
Q Consensus 350 ~V~~yA~d~~~F~~~Fa~Am~Km~-----~lgvltg~~GeIR~ 387 (393)
-++.|. .|.+.|...|.-+. +|.|=-|+.||.|-
T Consensus 234 plq~Y~----Dfm~SFr~~F~~~~~~~I~eI~VGlGP~GELRY 272 (531)
T PLN02161 234 AVQCYE----DFMLSFSTKFEPYIGNVIEEISIGLGPSGELRY 272 (531)
T ss_pred HHHHHH----HHHHHHHHHHHHHhcCceEEEEeccccCccccC
Confidence 356673 47777777777654 56666789999985
No 27
>COG5510 Predicted small secreted protein [Function unknown]
Probab=22.32 E-value=67 Score=23.26 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=13.1
Q ss_pred Cccc---hHHHHHHHHHhhhccc
Q 016209 1 MMRR---VSFLVFLLCIVISFKN 20 (393)
Q Consensus 1 ~~~~---~~~~~~~~~~~~~~~~ 20 (393)
|||| +++++++.|.+..=-|
T Consensus 1 mmk~t~l~i~~vll~s~llaaCN 23 (44)
T COG5510 1 MMKKTILLIALVLLASTLLAACN 23 (44)
T ss_pred CchHHHHHHHHHHHHHHHHHHhh
Confidence 7899 6666666666665443
Done!