Query 016210
Match_columns 393
No_of_seqs 285 out of 1128
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 09:45:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016210.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016210hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3saf_A Exosome component 10; e 100.0 8.4E-34 2.9E-38 289.5 20.3 256 9-305 108-392 (428)
2 1yt3_A Ribonuclease D, RNAse D 100.0 5.1E-32 1.7E-36 272.0 20.5 248 10-301 2-264 (375)
3 2hbj_A Exosome complex exonucl 100.0 2.4E-31 8.3E-36 270.4 22.5 254 11-303 87-366 (410)
4 3cym_A Uncharacterized protein 100.0 4.7E-29 1.6E-33 255.6 18.6 255 11-305 18-289 (440)
5 2e6m_A Werner syndrome ATP-dep 100.0 1.5E-27 5E-32 220.1 18.7 186 4-222 10-201 (208)
6 1vk0_A Hypothetical protein; h 99.9 2.8E-27 9.7E-32 219.7 15.3 167 19-214 27-205 (206)
7 2kfn_A Klenow fragment of DNA 99.8 7E-18 2.4E-22 179.1 17.5 188 9-230 5-212 (605)
8 3pv8_A DNA polymerase I; DNA p 99.7 4.6E-17 1.6E-21 172.2 12.9 164 33-231 30-200 (592)
9 1x9m_A DNA polymerase; DNA plo 99.5 5.4E-14 1.8E-18 151.5 7.9 154 34-221 1-188 (698)
10 4dfk_A DNA polymerase I, therm 99.1 6.9E-11 2.3E-15 123.8 5.8 133 33-231 11-148 (540)
11 3v9w_A Ribonuclease T; DEDD nu 98.4 4.2E-06 1.4E-10 77.8 14.1 172 19-222 24-227 (235)
12 1bgx_T TAQ DNA polymerase; DNA 98.3 7.7E-07 2.6E-11 97.5 7.1 130 33-230 305-439 (832)
13 2p1j_A POLIII, DNA polymerase 97.6 0.0007 2.4E-08 60.5 11.9 100 91-220 81-180 (186)
14 1wlj_A Interferon stimulated g 97.4 0.0012 3.9E-08 59.3 11.3 100 91-221 72-174 (189)
15 2f96_A Ribonuclease T; RNAse, 97.0 0.013 4.3E-07 53.7 13.8 92 104-222 126-219 (224)
16 1y97_A Three prime repair exon 96.1 0.028 9.5E-07 51.7 9.9 110 91-218 98-212 (238)
17 3mxm_B Three prime repair exon 95.8 0.035 1.2E-06 51.8 9.4 110 91-218 103-217 (242)
18 2qxf_A Exodeoxyribonuclease I; 95.8 0.15 5.2E-06 52.4 14.8 159 30-214 7-199 (482)
19 2gui_A DNA polymerase III epsi 95.4 0.06 2E-06 47.8 9.0 100 91-215 84-184 (194)
20 3u3y_B Three prime repair exon 95.4 0.072 2.5E-06 51.9 10.1 111 91-218 103-217 (314)
21 1w0h_A 3'-5' exonuclease ERI1; 94.3 0.13 4.4E-06 45.9 8.2 98 91-215 87-194 (204)
22 2xri_A ERI1 exoribonuclease 3; 92.0 0.63 2.2E-05 42.3 9.1 96 91-213 106-211 (224)
23 2igi_A Oligoribonuclease; RNAs 90.9 2.7 9.3E-05 36.4 11.7 32 91-122 83-118 (180)
24 1qht_A Protein (DNA polymerase 90.6 4.4 0.00015 43.9 15.4 158 33-214 136-328 (775)
25 1zbh_A 3'-5' exonuclease ERI1; 90.5 1.2 4.3E-05 42.3 9.9 101 91-215 155-262 (299)
26 1zbu_A ERI-1 homolog, 3'-5' ex 89.5 1.6 5.4E-05 42.9 10.0 101 91-215 205-312 (349)
27 1wud_A ATP-dependent DNA helic 87.7 0.054 1.8E-06 42.9 -1.7 45 258-302 11-65 (89)
28 3tr8_A Oligoribonuclease; tran 82.6 7.7 0.00026 34.4 9.8 33 91-123 87-123 (186)
29 3cg7_A CRN-4, cell death-relat 82.1 1.4 4.9E-05 42.3 5.1 100 91-214 97-207 (308)
30 1s5j_A DNA polymerase I; repli 81.7 32 0.0011 37.5 16.3 162 32-210 190-387 (847)
31 3iay_A DNA polymerase delta ca 79.4 16 0.00055 40.3 13.0 113 91-212 315-465 (919)
32 2rhf_A DNA helicase RECQ; HRDC 77.6 0.33 1.1E-05 37.0 -0.9 42 261-302 6-57 (77)
33 2gbz_A Oligoribonuclease; ORN, 75.7 4.2 0.00014 35.9 5.8 33 91-123 87-123 (194)
34 3k59_A POL II, DNA polymerase 68.8 29 0.00098 37.6 11.4 51 160-212 292-349 (786)
35 4gmj_B CCR4-NOT transcription 68.0 83 0.0028 29.8 14.3 86 101-218 147-247 (285)
36 2rrd_A BLM HRDC domain, HRDC d 67.4 1.7 5.9E-05 35.0 1.1 46 255-300 17-72 (101)
37 2kv2_A Bloom syndrome protein; 58.6 1.5 5.1E-05 34.0 -0.8 44 258-301 11-58 (85)
38 2dgz_A Werner syndrome protein 53.1 3.3 0.00011 34.0 0.4 43 260-302 28-74 (113)
39 2e1f_A Werner syndrome ATP-dep 48.4 2.5 8.7E-05 34.1 -1.0 45 258-302 19-67 (103)
40 3ikm_A DNA polymerase subunit 28.4 64 0.0022 36.3 5.6 108 105-219 195-350 (1172)
41 3d45_A Poly(A)-specific ribonu 23.2 1.1E+02 0.0038 31.1 6.1 108 100-217 272-393 (507)
42 4hec_A Putative uncharacterize 20.2 4.3E+02 0.015 23.2 8.6 17 198-214 164-180 (190)
No 1
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=100.00 E-value=8.4e-34 Score=289.51 Aligned_cols=256 Identities=21% Similarity=0.249 Sum_probs=210.3
Q ss_pred ccEEEEeCCChHHHHHHHHHHcCCCeEEEEEEEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCCC
Q 016210 9 LKIHLVTSTESPEFTHLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSIP 88 (393)
Q Consensus 9 ~~i~lV~t~~~~el~~ll~~L~~~~~Va~D~E~~~~~~~~~~~~~v~LlQIa~~~~~~~~~~~~~~~~~~v~LID~~~l~ 88 (393)
..|++|++ .+++..+++.+...+.||||+||.+... +.+.+++|||++. +++|+||+..+.
T Consensus 108 ~~y~~I~t--~e~L~~~l~~L~~~~~vavDtE~~~~~~---~~~~l~lIQLa~~--------------~~~~lidpl~l~ 168 (428)
T 3saf_A 108 TPCHFISS--LDELVELNEKLLNCQEFAVNLEHHSYRS---FLGLTCLMQISTR--------------TEDFIIDTLELR 168 (428)
T ss_dssp SCEEEECS--HHHHHHHHHHHTTCSEEEEEEEEECTTC---SSCEEEEEEEECS--------------SCEEEEETTTTG
T ss_pred CCcEEECC--HHHHHHHHHHHhcCCeEEEEEEecCCCC---CCCeEEEEEEEeC--------------CcEEEEEeccch
Confidence 36789999 9999999999998999999999988764 7789999999984 568999988764
Q ss_pred chhhHHHHHHhhCCCCcEEEEEehHhHHHHHHhhcccCCCcCCcCCCCceeeHHHHHHHHhccccCCCCCCCcccHHHHH
Q 016210 89 LPSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANIC 168 (393)
Q Consensus 89 ~~~~~~~L~~lLe~~~i~KVgh~~k~Dl~~L~~~~gi~g~~~~~~~~~~~fDlt~LA~yLl~~~~~~~~~~~~~sLa~Lv 168 (393)
..+..|+++|+|+++.|||||+++|+.+|.+.||+ . +.++|| |++|+|++++. .+||+.|+
T Consensus 169 --~~l~~L~~lL~dp~i~KV~H~~k~Dl~~L~~~~Gi---~-----~~~~fD-T~lAa~lL~~~--------~~gL~~Lv 229 (428)
T 3saf_A 169 --SDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGL---Y-----VVNMFD-THQAARLLNLG--------RHSLDHLL 229 (428)
T ss_dssp --GGGGGGHHHHTCTTSEEEESSCHHHHHHHHHHHCC---C-----CSSEEE-HHHHHHHTTCS--------CCSHHHHH
T ss_pred --hhHHHHHHHHcCCCceEEEeehHHHHHHHHHHcCC---C-----cCceee-chhHHHHhCCC--------CCCHHHHH
Confidence 34678999999999999999999999999866876 2 568999 99999999974 58999999
Q ss_pred HHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--------ccccccccC---Cccccc
Q 016210 169 KELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGNS--------CSSISELDS---SNLDLG 237 (393)
Q Consensus 169 e~~Lg~~L~K~~q~sdWs~RPLs~~Ql~YAA~DA~~Ll~L~~~L~~~L~~~g~l--------~~e~~~l~~---~~~~~~ 237 (393)
++|||++++|..+.+||+.|||+++|+.|||.||++++.||+.|.++|++.|+. -.|+..+.. ..+...
T Consensus 230 ~~~Lg~~l~K~~~~sdW~~rpLs~~q~~YAA~DA~~ll~L~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (428)
T 3saf_A 230 KLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKKFIKPIFT 309 (428)
T ss_dssp HHHHCCCCCCTTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHHHTTCCCCCCCCC
T ss_pred HHHcCCCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHhhcCCCCC
Confidence 999999999999999999999999999999999999999999999999999872 112222211 111122
Q ss_pred ccCcccCcccCCCccccchhhHHHHHHHHhh------hhcCCCCc-ccccccc---ccCCCCCHHHHHHH--------Hh
Q 016210 238 LKGILEKPDIGNKTVRFKLCEALDIIRATSY------YSQCLPEG-VVSRVSY---LNTMPMDESLVKIV--------RK 299 (393)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~--------~~ 299 (393)
...|...|++..+ ...+++++++++||. +++|+||. |+++..+ |..+|.+...|..+ +.
T Consensus 310 ~~~~~~~~~~~~~---~l~~~~l~l~~~L~~wR~~~Ar~~d~p~~~V~~d~~L~~iA~~~P~~~~~L~~i~g~~~~~~r~ 386 (428)
T 3saf_A 310 DESYLELYRKQKK---HLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQ 386 (428)
T ss_dssp TTGGGHHHHTTCC---CCCHHHHHHHHHHHHHHHHHHHHHTCCHHHHCCHHHHHHHHHHCCSSHHHHHTTCSSCCHHHHH
T ss_pred cccHHHHHHHhcc---CCChHHHHHHHHHHHHHHHHHHHcCCCcCEEECHHHHHHHHHHCCCCHHHHHhccCCCHHHHHH
Confidence 2345555655543 456789999999966 56699999 9999887 99999999988765 66
Q ss_pred hcceee
Q 016210 300 YGEKIL 305 (393)
Q Consensus 300 ~~~~~~ 305 (393)
||+.|+
T Consensus 387 ~g~~~l 392 (428)
T 3saf_A 387 QINEMH 392 (428)
T ss_dssp THHHHH
T ss_pred HHHHHH
Confidence 666653
No 2
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=100.00 E-value=5.1e-32 Score=271.98 Aligned_cols=248 Identities=21% Similarity=0.282 Sum_probs=207.4
Q ss_pred cEEEEeCCChHHHHHHHHHHcCCCeEEEEEEEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCCCc
Q 016210 10 KIHLVTSTESPEFTHLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSIPL 89 (393)
Q Consensus 10 ~i~lV~t~~~~el~~ll~~L~~~~~Va~D~E~~~~~~~~~~~~~v~LlQIa~~~~~~~~~~~~~~~~~~v~LID~~~l~~ 89 (393)
+|.+|++ .++++.+++.+...+.||||+||.+... +.+.++++||++. +.+|+||+..+.
T Consensus 2 ~~~~I~t--~~~l~~~~~~l~~~~~va~D~E~~~~~~---~~~~l~liqla~~--------------~~~~lid~~~l~- 61 (375)
T 1yt3_A 2 NYQMITT--DDALASLCEAVRAFPAIALDTEFVRTRT---YYPQLGLIQLFDG--------------EHLALIDPLGIT- 61 (375)
T ss_dssp CCEEECS--HHHHHHHHHHHTTSSEEEEEEEEECCSC---SSCEEEEEEEECS--------------SCEEEECGGGCS-
T ss_pred CeEEeCC--HHHHHHHHHHHcCCCeEEEEeeecCCCc---CCCceEEEEEecC--------------CcEEEEeCCCCC-
Confidence 4678888 8899999999888899999999998763 6789999999973 468999964442
Q ss_pred hhhHHHHHHhhCCCCcEEEEEehHhHHHHHHhhcccCCCcCCcCCCCceeeHHHHHHHHhccccCCCCCCCcccHHHHHH
Q 016210 90 PSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICK 169 (393)
Q Consensus 90 ~~~~~~L~~lLe~~~i~KVgh~~k~Dl~~L~~~~gi~g~~~~~~~~~~~fDlt~LA~yLl~~~~~~~~~~~~~sLa~Lve 169 (393)
.+..|+++|+|+++.|||||+++|+.+|.+.||+ . +.++|| |++|+|++++. ..+||++|++
T Consensus 62 --~~~~L~~ll~d~~i~Kv~h~~k~Dl~~L~~~~Gi---~-----~~~~fD-t~lAa~lL~~~-------~~~~L~~L~~ 123 (375)
T 1yt3_A 62 --DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGE---L-----PQPLID-TQILAAFCGRP-------MSWGFASMVE 123 (375)
T ss_dssp --CCHHHHHHHHCTTSEEEESSCHHHHHHHHHHHSS---C-----CSSEEE-HHHHHHHTTCC-------TTCCHHHHHH
T ss_pred --ChHHHHHHHcCCCceEEEeeHHHHHHHHHHHcCC---C-----CCcEEE-cHHHHHHcCCC-------CChhHHHHHH
Confidence 3578999999999999999999999999876776 2 458999 99999999874 4799999999
Q ss_pred HHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----ccccccccCCcccccccCcccC
Q 016210 170 ELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGNS-----CSSISELDSSNLDLGLKGILEK 244 (393)
Q Consensus 170 ~~Lg~~L~K~~q~sdWs~RPLs~~Ql~YAA~DA~~Ll~L~~~L~~~L~~~g~l-----~~e~~~l~~~~~~~~~~~~~~~ 244 (393)
+|||..+.|+.+.+||+.|||+++|+.|||.||++++.||+.|.++|++.|.. +.|+++....... .-.+.
T Consensus 124 ~~l~~~l~K~~~~sdw~~rpL~~~q~~YAa~Da~~l~~L~~~L~~~L~~~g~~~l~~~e~E~pl~~~~~~~----~~~~~ 199 (375)
T 1yt3_A 124 EYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVV----APEDA 199 (375)
T ss_dssp HHHCCCCCCTTTTSCTTSSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC----CGGGG
T ss_pred HHcCCCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHhhcccCC----CchHH
Confidence 99999999999999999999999999999999999999999999999999865 4555554321111 11245
Q ss_pred cccCCCccccchhhHHHHHHHHhh------hhcCCCCc-ccccccc---ccCCCCCHHHHHHHHhhc
Q 016210 245 PDIGNKTVRFKLCEALDIIRATSY------YSQCLPEG-VVSRVSY---LNTMPMDESLVKIVRKYG 301 (393)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~ 301 (393)
|++.++.++. .+++++++++||. +++|+||. |+++..+ |..+|.+...+..+ ++|
T Consensus 200 ~~~~~~~~~l-~~~~~~~~~~L~~wR~~~A~~~d~p~~~V~~d~~L~~iA~~~P~~~~~l~~i-g~~ 264 (375)
T 1yt3_A 200 WRDITNAWQL-RTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSL-GLS 264 (375)
T ss_dssp GGGSTTGGGS-CHHHHHHHHHHHHHHHHHHHHHTCCGGGTSCHHHHHHHHHHCCCSHHHHHHT-TCC
T ss_pred HHhccCcccC-CHHHHHHHHHHHHHHHHHHHHhCCCcceEECHHHHHHHHHHCCCCHHHHHhc-CCC
Confidence 7788888877 6899999999976 66799999 8999887 89999999988876 443
No 3
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=99.98 E-value=2.4e-31 Score=270.36 Aligned_cols=254 Identities=20% Similarity=0.201 Sum_probs=206.8
Q ss_pred EEEEeCCChHHHHHHHHHHcCCCeEEEEEEEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCCCch
Q 016210 11 IHLVTSTESPEFTHLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSIPLP 90 (393)
Q Consensus 11 i~lV~t~~~~el~~ll~~L~~~~~Va~D~E~~~~~~~~~~~~~v~LlQIa~~~~~~~~~~~~~~~~~~v~LID~~~l~~~ 90 (393)
+.+|++ .++++.+++.+...+.||||+||.+... +.+++++|||++. +.+|+||+..+.
T Consensus 87 ~~~I~t--~~~L~~~~~~L~~~~~vavDtE~~~~~~---~~~~l~liQla~~--------------~~~ylid~l~l~-- 145 (410)
T 2hbj_A 87 PIWVDT--STELESMLEDLKNTKEIAVDLEHHDYRS---YYGIVCLMQISTR--------------ERDYLVDTLKLR-- 145 (410)
T ss_dssp CEEECS--HHHHHHHHHHHTTCSEEEEEEEEECSSS---SSCEEEEEEEECS--------------SCEEEEETTTTT--
T ss_pred cEEeCC--HHHHHHHHHHHhhCCceEEEeeecCCcC---CCCcEEEEEEEEC--------------CcEEEEechhhh--
Confidence 678888 8899999999888889999999987543 5689999999984 468999975442
Q ss_pred hhHHHHHHhhCCCCcEEEEEehHhHHHHHHhhcccCCCcCCcCCCCceeeHHHHHHHHhccccCCCCCCCcccHHHHHHH
Q 016210 91 SIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKE 170 (393)
Q Consensus 91 ~~~~~L~~lLe~~~i~KVgh~~k~Dl~~L~~~~gi~g~~~~~~~~~~~fDlt~LA~yLl~~~~~~~~~~~~~sLa~Lve~ 170 (393)
..+..|+++|+|+++.|||||+++|+.+|.+.||+ . +.++|| |++|+|++++. ++||+.|+++
T Consensus 146 ~~l~~L~~lL~d~~i~KV~h~~k~Dl~~L~~~~Gi---~-----~~~~fD-t~lAa~LL~~~--------~~~L~~L~~~ 208 (410)
T 2hbj_A 146 ENLHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGL---Y-----VVGLFD-TYHASKAIGLP--------RHSLAYLLEN 208 (410)
T ss_dssp TTGGGGHHHHTCTTSEEEESSCHHHHHHHHHHHCC---C-----CSSEEE-HHHHHHHHTCS--------CCSHHHHHHH
T ss_pred hhHHHHHHHHcCCCceEEEEehHHHHHHHHHHcCC---C-----cCCEEE-cHHHHHHhCCC--------ccCHHHHHHH
Confidence 24567999999999999999999999999887776 2 456999 99999999974 6899999999
Q ss_pred HcCCcccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---ccccccccC--------Cccccc--
Q 016210 171 LLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGNS---CSSISELDS--------SNLDLG-- 237 (393)
Q Consensus 171 ~Lg~~L~K~~q~sdWs~RPLs~~Ql~YAA~DA~~Ll~L~~~L~~~L~~~g~l---~~e~~~l~~--------~~~~~~-- 237 (393)
|||..++|+.+.+||+.|||+++|+.|||.||++++.||+.|.++|++.|++ .+|+..+.. .++...
T Consensus 209 ~lg~~l~K~~~~sdW~~rpL~~~q~~YAa~Da~~ll~L~~~L~~~L~~~g~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~ 288 (410)
T 2hbj_A 209 FANFKTSKKYQLADWRIRPLSKPMTAAARADTHFLLNIYDQLRNKLIESNKLAGVLYESRNVAKRRFEYSKYRPLTPSSE 288 (410)
T ss_dssp HSCCCCCCTTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCEECCGGGCCSSCCSS
T ss_pred HcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHhhhccccccccccc
Confidence 9999999999999999999999999999999999999999999999999876 334433211 111000
Q ss_pred ---ccCcccCcccCCCccccchhhHHHHHHHHhh------hhcCCCCc-ccccccc---ccCCCCCHHHHHHHHhhcce
Q 016210 238 ---LKGILEKPDIGNKTVRFKLCEALDIIRATSY------YSQCLPEG-VVSRVSY---LNTMPMDESLVKIVRKYGEK 303 (393)
Q Consensus 238 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 303 (393)
...-.+.|++.++.++++ +++++++++||. +++|+||. |+++..+ |..+|.+...|..++++|.+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~-~~~~~l~~~L~~wR~~~Ar~~d~p~~~V~~D~~L~~iA~~~P~~~~~L~~i~g~~~~ 366 (410)
T 2hbj_A 289 VYSPIEKESPWKILMYQYNIP-PEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLTNGVTE 366 (410)
T ss_dssp EECCCCSSSSSSSCSSCSCCC-STTHHHHHHHHHHHHHHHHHHTCCHHHHCCHHHHHHHHHHCCCSHHHHHTCTTCCCH
T ss_pred cccCCchhHHHHHHhhhcCCC-HHHHHHHHHHHHHHHHHHHHcCCCCcEEECHHHHHHHHHhCCCCHHHHHhCCCCCHH
Confidence 011235688888877654 356799999966 66799999 9999887 89999999999887766544
No 4
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=99.96 E-value=4.7e-29 Score=255.63 Aligned_cols=255 Identities=21% Similarity=0.238 Sum_probs=208.3
Q ss_pred EEEEeCCChHHHHHHHHHHcCC-CeEEEEEEEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCCCc
Q 016210 11 IHLVTSTESPEFTHLARALSQS-SLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSIPL 89 (393)
Q Consensus 11 i~lV~t~~~~el~~ll~~L~~~-~~Va~D~E~~~~~~~~~~~~~v~LlQIa~~~~~~~~~~~~~~~~~~v~LID~~~l~~ 89 (393)
+.+|++ .+++..+++.+... +.||||+||.+... +.+.++++||++. ++.+|+||+..+..
T Consensus 18 ~~~I~t--~e~L~~~~~~L~~~~~~vavDtE~~~~~~---~~~~l~liQla~~-------------~~~~~lid~l~~~~ 79 (440)
T 3cym_A 18 PNVIDT--LPAFRDYCSELASSHGSLAADAERASGFR---YGHEDWLVQFKRD-------------GAGIGLLDPQALAA 79 (440)
T ss_dssp CCEECS--HHHHHHHHHHHHSCEEEEEEEEEECTTTS---SSCCEEEEEEEEE-------------TTEEEEECHHHHHH
T ss_pred CEeeCC--HHHHHHHHHHHHhcCCeEEEEeeecCCCC---CCCCEEEEEEEEC-------------CCcEEEEEcCCccc
Confidence 357888 78999999988766 88999999987653 5789999999985 46688888632100
Q ss_pred -hhhHHHHHHhhCCCCcEEEEEehHhHHHHHHhhcccCCCcCCcCCCCceeeHHHHHHHHhccccCCCCCCCcccHHHHH
Q 016210 90 -PSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANIC 168 (393)
Q Consensus 90 -~~~~~~L~~lLe~~~i~KVgh~~k~Dl~~L~~~~gi~g~~~~~~~~~~~fDlt~LA~yLl~~~~~~~~~~~~~sLa~Lv 168 (393)
...+..|+++|+|+ .||+|++++|+.+|. .+|+ . +.++|| |++|+|++++. ++||+.|+
T Consensus 80 ~~~~l~~L~~lL~d~--~KV~h~~k~Dl~~L~-~~gi---~-----~~~~fD-t~lAa~lL~~~--------~~gL~~L~ 139 (440)
T 3cym_A 80 AGADWNDFNRAVGDA--VWILHDSLQDLPGFD-ELGM---E-----PQRLFD-TEIAARLLGLK--------RFGLAAVT 139 (440)
T ss_dssp TTCCHHHHHHHHTTC--EEEESSHHHHHHHHH-HHTC---C-----CCEEEE-HHHHHHHTTCS--------SCSHHHHH
T ss_pred cccCHHHHHHHHCCC--CEEEEcCHHHHHHHH-HcCC---c-----CCceeh-HHHHHHHhCCC--------CCCHHHHH
Confidence 01257899999997 699999999999997 5776 2 468999 89999999963 79999999
Q ss_pred HHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---ccccccccCCccc-ccccCcccC
Q 016210 169 KELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGNS---CSSISELDSSNLD-LGLKGILEK 244 (393)
Q Consensus 169 e~~Lg~~L~K~~q~sdWs~RPLs~~Ql~YAA~DA~~Ll~L~~~L~~~L~~~g~l---~~e~~~l~~~~~~-~~~~~~~~~ 244 (393)
+.|||..+.|..+.+||+.|||+++|+.|||.||++++.||+.|..+|.+.|.. .+||..+...... .. .-.+.
T Consensus 140 ~~~lg~~~~K~~~~sdw~~rpLs~~q~~YAa~Da~~Ll~L~~~L~~~L~~~g~~~l~~~e~~~l~~~~~~~~~--~~~~~ 217 (440)
T 3cym_A 140 EHFLGLTLAKEHSAADWSYRPLPRDWRNYAALDVELLIELETKMRAELKRQGKMEWAQEEFDYALKEGLGPRK--EHLIP 217 (440)
T ss_dssp HHHHCEECCCCCTTCCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSSSCC--CCSSG
T ss_pred HHHhCCCcccccccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHhccccccCC--CchHH
Confidence 999999999999999999999999999999999999999999999999999987 6788877542221 11 11245
Q ss_pred cccCCCcccc-chhhHHHHHHHHhh------hhcCCCCc-ccccccc---ccCCCCCHHHHHHHHhhcceee
Q 016210 245 PDIGNKTVRF-KLCEALDIIRATSY------YSQCLPEG-VVSRVSY---LNTMPMDESLVKIVRKYGEKIL 305 (393)
Q Consensus 245 ~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 305 (393)
|++.++..+. +.+++++++++||. +.+|+||. |+++..+ |..+|.+...+..++.+|++-+
T Consensus 218 ~~~~~~~~~l~~~~~~l~~~~~L~~wR~~~Ar~~d~p~~~V~~d~~L~~iA~~~P~~~~~l~~~~~~~~~~~ 289 (440)
T 3cym_A 218 WMHVSHITEVMRDRQALAIVRALWTRRDELAREYDIAPTLLLSDSSIIEVAKRKPHNAAQFRSIRSINERVR 289 (440)
T ss_dssp GGCCTTGGGGTTCHHHHHHHHHHHHHHHHHHHHTTSCHHHHSCHHHHHHHHHHCCCSHHHHHTCSGGGSCCC
T ss_pred HHHhccccccCCCHHHHHHHHHHHHHHHHHHHHhCCCccEEECHHHHHHHHHHCCCCHHHHHhCCCCCchhe
Confidence 6666665544 57899999999977 67799999 8999987 9999999999999988887655
No 5
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=99.95 E-value=1.5e-27 Score=220.10 Aligned_cols=186 Identities=30% Similarity=0.396 Sum_probs=150.7
Q ss_pred CCCCCccEEEEeCCChHHHH----HHHHHHcCCCeEEEEEEEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEE
Q 016210 4 TYRKPLKIHLVTSTESPEFT----HLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVV 79 (393)
Q Consensus 4 ~~~~~~~i~lV~t~~~~el~----~ll~~L~~~~~Va~D~E~~~~~~~~~~~~~v~LlQIa~~~~~~~~~~~~~~~~~~v 79 (393)
....+..|++|++ .+++. .+++.+...++||||+||.+.+.. .+.++++++|+|+. ++.+
T Consensus 10 ~~~f~g~i~~i~~--~~~~~~~~~~~~~~l~~~~~v~~D~E~~~~~~~-~~~~~~~~iqla~~-------------~~~~ 73 (208)
T 2e6m_A 10 FLEFPGSIVYSYE--ASDCSFLSEDISMRLSDGDVVGFDMEWPPIYKP-GKRSRVAVIQLCVS-------------ESKC 73 (208)
T ss_dssp BCCCCSEEEEECS--HHHHHHHHHHHHHHCCTTCEEEEEEECCC---C-CSCCCCCEEEEECS-------------SSEE
T ss_pred ccccCCcEEEEeC--HHHHHHHHHHHHHHhccCCEEEEEeecCCCCCC-CCCCCeEEEEEecC-------------CCeE
Confidence 3456678999999 88888 555667777889999999886321 14578999999984 4678
Q ss_pred EEEeCCCCCchhhHHHHHHhhCCCCcEEEEEehHhHHHHHHhhcccCCCcCCcCCCCceeeHHHHHHHHhccccCCCCCC
Q 016210 80 FLLDLSSIPLPSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPK 159 (393)
Q Consensus 80 ~LID~~~l~~~~~~~~L~~lLe~~~i~KVgh~~k~Dl~~L~~~~gi~g~~~~~~~~~~~fDlt~LA~yLl~~~~~~~~~~ 159 (393)
|+||+..+. .+...|+++|+++++.|||||+++|+..|.+.||+ . +.++||+|++|+|++++.
T Consensus 74 ~~i~~~~~~--~~~~~L~~lL~d~~i~Kv~~~~k~D~~~L~~~~gi---~-----~~~~fDlt~lAayll~~~------- 136 (208)
T 2e6m_A 74 YLFHISSMS--VFPQGLKMLLENKSIKKAGVGIEGDQWKLLRDFDV---K-----LESFVELTDVANEKLKCA------- 136 (208)
T ss_dssp EEECGGGCS--SCCHHHHHHHTCTTSEEEESSHHHHHHHHHHHHCC---C-----CCSEEEHHHHHHHHTTCC-------
T ss_pred EEEECcccc--cchHHHHHHhcCCCceEEEEeeHHHHHHHHHHCCC---C-----CCCEEEHHHHHHHHccCC-------
Confidence 999876543 24578999999999999999999999999987776 2 456999999999999863
Q ss_pred CcccHHHHHHHHcCCcccc--cccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 016210 160 ETKSLANICKELLDISLSK--ELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGNS 222 (393)
Q Consensus 160 ~~~sLa~Lve~~Lg~~L~K--~~q~sdWs~RPLs~~Ql~YAA~DA~~Ll~L~~~L~~~L~~~g~l 222 (393)
..+||++|++++||..+.| ..+++||+.+||+.+|+.|||.||+++++||+.|.++|++.|+.
T Consensus 137 ~~~~L~~L~~~~l~~~~~K~k~~~~s~W~~~~L~~~q~~YAa~Da~~~~~L~~~L~~~L~~~~~~ 201 (208)
T 2e6m_A 137 ETWSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKLGNLGDTVQVF 201 (208)
T ss_dssp CCCCHHHHHHHHHSCBCCCCHHHHTSCTTSSSCCHHHHHHHHHHHHHHHHHHHHHHTCC------
T ss_pred CChhHHHHHHHHcCCCcCCCCCeeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccchhhhh
Confidence 4799999999999998854 67899999999999999999999999999999999999988765
No 6
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=99.95 E-value=2.8e-27 Score=219.74 Aligned_cols=167 Identities=16% Similarity=0.226 Sum_probs=133.1
Q ss_pred hHHHHHHHHHH------cCCCeEEEEEEEeCCCCC---CCCC--CceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCC
Q 016210 19 SPEFTHLARAL------SQSSLVGLDAEWKPQRSH---QSNF--PRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSI 87 (393)
Q Consensus 19 ~~el~~ll~~L------~~~~~Va~D~E~~~~~~~---~~~~--~~v~LlQIa~~~~~~~~~~~~~~~~~~v~LID~~~l 87 (393)
.+++..+++.+ .+..+||||+||.+.+.. .++. ++++|||||+. +.+++|++. .
T Consensus 27 ~~~l~~~~~~~~~~~~~~~~~vvg~DtEw~p~~~~~~~~~~~~~~~~~LiQla~~--------------~~~~l~~l~-~ 91 (206)
T 1vk0_A 27 STDISPYLSLIREDSILNGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLSTR--------------NLCLFLRLP-K 91 (206)
T ss_dssp SCCCHHHHHHHHHHHHHHSTTEEEEEEEEECCC------CGGGGCEEEEEEEECS--------------SEEEEEECC-S
T ss_pred HHHHHHHHHHHHHhhhhcCCCEEEEEeeccCCCcccccccCCCCCceEEEEEecC--------------CCeEEEecc-c
Confidence 34555565554 567899999999975410 0123 58999999984 569999982 1
Q ss_pred CchhhHHHHHHhhCCCCcEEEEEehHhHHHHHHhhcccCCCcCCcCCCCceeeHHHHHHHHhccccCCCCCCCcccHHHH
Q 016210 88 PLPSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANI 167 (393)
Q Consensus 88 ~~~~~~~~L~~lLe~~~i~KVgh~~k~Dl~~L~~~~gi~g~~~~~~~~~~~fDlt~LA~yLl~~~~~~~~~~~~~sLa~L 167 (393)
.....+.+|.++|+|++|+||||++++|+..|++.||+ .+.++||++.+|+..++... ...+||+.|
T Consensus 92 ~~~~~L~~L~~lL~d~~i~Kvg~~~~~D~~~L~~~~g~--------~~~~~~Dl~~la~~~lg~~~-----~~~~gL~~L 158 (206)
T 1vk0_A 92 PFHDNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGL--------VIRNAINVGKLAAEARGTLV-----LEFLGTREL 158 (206)
T ss_dssp SCCGGGHHHHHHHTCSSSEEEESSCHHHHHHHHHHHCC--------CCSSEEEHHHHHHHHHTCGG-----GGGCCHHHH
T ss_pred cCCccHHHHHHHhcCCCceEEEeccHHHHHHHHHhcCC--------CcCCeeeHHHHHHHHcCCCC-----CCCccHHHH
Confidence 11234556899999999999999999999999998876 26899997778877766420 137899999
Q ss_pred HHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016210 168 CKELLDISL-SKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQV 214 (393)
Q Consensus 168 ve~~Lg~~L-~K~~q~sdWs~RPLs~~Ql~YAA~DA~~Ll~L~~~L~~ 214 (393)
++++||+++ +|..++|||+. ||+++|+.|||.||++++.||+.|.+
T Consensus 159 v~~~lg~~lK~k~~~~SdW~~-pLs~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 159 AHRVLWSDLGQLDSIEAKWEK-AGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp HHHHHCCCCHHHHHHHHTGGG-SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCcCCCCCcccCCCCC-cCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999 55779999999 99999999999999999999999864
No 7
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=99.76 E-value=7e-18 Score=179.06 Aligned_cols=188 Identities=17% Similarity=0.175 Sum_probs=149.3
Q ss_pred ccEEEEeCCChHHHHHHHHHHcCCCeEEEEEEEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCC--
Q 016210 9 LKIHLVTSTESPEFTHLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSS-- 86 (393)
Q Consensus 9 ~~i~lV~t~~~~el~~ll~~L~~~~~Va~D~E~~~~~~~~~~~~~v~LlQIa~~~~~~~~~~~~~~~~~~v~LID~~~-- 86 (393)
..|.+|++ .++++.+++.+...+.++||+|+.+... +.+++..+|++.. .+..++|++..
T Consensus 5 ~~y~~I~~--~~~l~~~~~~l~~~~~va~DtEttgl~~---~~~~iv~I~~~~~-------------~g~~~yip~~~~~ 66 (605)
T 2kfn_A 5 DNYVTILD--EETLKAWIAKLEKAPVFAFDTETDSLDN---ISANLVGLSFAIE-------------PGVAAYIPVAHDY 66 (605)
T ss_dssp SSSEECCS--HHHHHHHHHHHHTSSSEEEEEEESCSCT---TTCCEEEEEEEEE-------------TTEEEEEECCCCS
T ss_pred hheEEecC--HHHHHHHHHhcccCCeEEEEEecCCCCc---ccCceEEEEEEEc-------------CCcEEEEeccccc
Confidence 45678887 7889999998877788999999998764 4567888888863 34556664322
Q ss_pred ------CCchhhHHHHHHhhCCCCcEEEEEehHhHHHHHHhhcccCCCcCCcCCCCceeeHHHHHHHHhccccCCCCCCC
Q 016210 87 ------IPLPSIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKE 160 (393)
Q Consensus 87 ------l~~~~~~~~L~~lLe~~~i~KVgh~~k~Dl~~L~~~~gi~g~~~~~~~~~~~fDlt~LA~yLl~~~~~~~~~~~ 160 (393)
+..++++..|+++|+++++.||+||+++|+.+|.+ +|+ . ....+|| |++++|++++. ..
T Consensus 67 ~~~~~~l~~~~vl~~L~~~L~d~~i~kV~hnak~D~~~L~~-~Gi---~----l~~~~~D-T~laayLL~p~------~~ 131 (605)
T 2kfn_A 67 LDAPDQISRERALELLKPLLEDEKALKVGQNLKYDRGILAN-YGI---E----LRGIAFD-TMLESYILNSV------AG 131 (605)
T ss_dssp TTCCCCCCHHHHHHHHHHHHTCTTSCEEESSHHHHHHHHHT-TTC---C----CCCEEEE-HHHHHHHHCTT------SS
T ss_pred cccccccCHHHHHHHHHHHHcCCCCeEEEECcHHHHHHHHH-CCC---C----CCCcccc-HHHHHHHhCCC------CC
Confidence 22245678899999999999999999999999988 665 2 2346899 99999999985 24
Q ss_pred cccHHHHHHHHcCCccc-------ccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCC----cccccc
Q 016210 161 TKSLANICKELLDISLS-------KELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQ-KGNS----CSSISE 228 (393)
Q Consensus 161 ~~sLa~Lve~~Lg~~L~-------K~~q~sdWs~RPLs~~Ql~YAA~DA~~Ll~L~~~L~~~L~~-~g~l----~~e~~~ 228 (393)
+++|++|+++|||+... |+.+.++|..+|+ +++..||+.||.++++|++.|.++|++ .|.. +.|||+
T Consensus 132 ~~~L~~La~~~Lg~~~i~~~~~~gKg~~~~~~~~~~l-e~~~~yAa~Da~~~~~L~~~L~~~L~~~~~l~~L~~~iE~Pl 210 (605)
T 2kfn_A 132 RHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIAL-EEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPL 210 (605)
T ss_dssp CCSHHHHHHHHSCCCCCCHHHHHCSSTTCCCGGGSCH-HHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHTHHHH
T ss_pred CCCHHHHHHHhcCCCcccHHHHhCCCcccCCcccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHH
Confidence 79999999999987653 4555568987777 779999999999999999999999987 6544 788877
Q ss_pred cc
Q 016210 229 LD 230 (393)
Q Consensus 229 l~ 230 (393)
+.
T Consensus 211 ~~ 212 (605)
T 2kfn_A 211 VP 212 (605)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 8
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=99.70 E-value=4.6e-17 Score=172.18 Aligned_cols=164 Identities=10% Similarity=-0.054 Sum_probs=136.2
Q ss_pred CeEEEEEEEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCCCchhhHHHHHHhhCCCCcEEEEEeh
Q 016210 33 SLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSIPLPSIWELLKELFVSPDILKLGFKF 112 (393)
Q Consensus 33 ~~Va~D~E~~~~~~~~~~~~~v~LlQIa~~~~~~~~~~~~~~~~~~v~LID~~~l~~~~~~~~L~~lLe~~~i~KVgh~~ 112 (393)
...++|+|...... +...++.+|++.. +++|+|++.. ......|+++|+|+++.||+||+
T Consensus 30 ~~~aldtE~~~~~~---~~a~Lvgisla~~--------------~~a~yIp~~~---~~~l~~Lk~lLed~~i~KV~hn~ 89 (592)
T 3pv8_A 30 DKAALVVEVVEENY---HDAPIVGIAVVNE--------------HGRFFLRPET---ALADPQFVAWLGDETKKKSMFDS 89 (592)
T ss_dssp SEEEEEEECCSSSC---TTCCCCEEEEEET--------------TEEEEECHHH---HTTCHHHHHHHTCTTSEEEESSH
T ss_pred cCcEEEEEEcCCcc---CcccEEEEEEEcC--------------CceEEEccch---hhHHHHHHHHHhCCCCeEEEech
Confidence 56799999887775 5678888999874 4578887532 12467899999999999999999
Q ss_pred HhHHHHHHhhcccCCCcCCcCCCCceeeHHHHHHHHhccccCCCCCCCcccHHHHHHHHcCCcccccccccCCCC---CC
Q 016210 113 KQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKELLDISLSKELQCSDWSN---RP 189 (393)
Q Consensus 113 k~Dl~~L~~~~gi~g~~~~~~~~~~~fDlt~LA~yLl~~~~~~~~~~~~~sLa~Lve~~Lg~~L~K~~q~sdWs~---RP 189 (393)
|+|+..|.+ +|+ . ..+++|| |+||+||+++. ...++|++|+++|||+.+.+..+..+|.. .+
T Consensus 90 K~Dl~vL~~-~Gi---~----l~g~~fD-TmLAAYLL~p~------~~~~~L~~La~~yLg~~l~~~ee~~gkg~~~~~~ 154 (592)
T 3pv8_A 90 KRAAVALKW-KGI---E----LCGVSFD-LLLAAYLLDPA------QGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVP 154 (592)
T ss_dssp HHHHHHHHH-TTC---C----CCCEEEE-HHHHHHHHCGG------GCCCSHHHHHGGGTCCSSCCHHHHHCSGGGCCCC
T ss_pred HHHHHHHHH-cCC---C----CCCccch-HHHHHHHcCCC------CCCCCHHHHHHHHcCCCCchHHHhcCccccccCc
Confidence 999999988 665 2 2467999 99999999986 34799999999999999998888888863 45
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----ccccccccC
Q 016210 190 LTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGNS----CSSISELDS 231 (393)
Q Consensus 190 Ls~~Ql~YAA~DA~~Ll~L~~~L~~~L~~~g~l----~~e~~~l~~ 231 (393)
..+.+..|||.||.++++|++.|.++|++.+.. +.|||++..
T Consensus 155 ~~e~~~~YAa~DA~~l~~L~~~L~~~L~e~~l~~l~~~~E~pl~~v 200 (592)
T 3pv8_A 155 DEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSI 200 (592)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHTHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHhHHHHH
Confidence 568889999999999999999999999998876 788887753
No 9
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=99.46 E-value=5.4e-14 Score=151.53 Aligned_cols=154 Identities=14% Similarity=0.069 Sum_probs=121.5
Q ss_pred eEEEEEEEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCCCchhhHHHHHHhhCCCCcEEEEEeh-
Q 016210 34 LVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSIPLPSIWELLKELFVSPDILKLGFKF- 112 (393)
Q Consensus 34 ~Va~D~E~~~~~~~~~~~~~v~LlQIa~~~~~~~~~~~~~~~~~~v~LID~~~l~~~~~~~~L~~lLe~~~i~KVgh~~- 112 (393)
.|+||+|+.+... +..+++++|++... .+.++++|+..+ +..++.|+++|+ +++.||+||+
T Consensus 1 ~vv~D~ETtGl~~---~~d~i~~iqi~~~~------------~~~~~~~~p~~i--~~~l~~L~~~l~-~~~~kV~HNa~ 62 (698)
T 1x9m_A 1 MIVSDIEANALLE---SVTKFHCGVIYDYS------------TAEYVSYRPSDF--GAYLDALEAEVA-RGGLIVFHNGH 62 (698)
T ss_dssp CEEEEEEESSCGG---GCCCEEEEEEEETT------------TTEEEEECGGGH--HHHHHHHHHHHH-TTCCEEESSTT
T ss_pred CEEEEcCCCCcCC---CCCEEEEEEEEecC------------CCcEEEEChHHH--HHHHHHHHHHHh-cCCeEEEcCCh
Confidence 4899999998875 56799999998741 357888886533 246789999999 8899999999
Q ss_pred HhHHHHHHhhc------ccCCCcCCcCCC-CceeeHHHHHHHHhccccCCCCCCCcccHHHHHHHHc-------CCcc--
Q 016210 113 KQDLIYLSSTF------CSQGCDIGFDRV-EPYLDITSIYNHLHHKQLGRKLPKETKSLANICKELL-------DISL-- 176 (393)
Q Consensus 113 k~Dl~~L~~~~------gi~g~~~~~~~~-~~~fDlt~LA~yLl~~~~~~~~~~~~~sLa~Lve~~L-------g~~L-- 176 (393)
++|+.+|.+.+ |+ ... ..+|| |++++|++++. ...++|++|+++|| |..+
T Consensus 63 kfD~~~L~~~~~~~~~~Gi-------~l~~~~~~D-TmlaayLL~p~------~~~~~L~~La~~~L~~sL~~~g~~lg~ 128 (698)
T 1x9m_A 63 KYDVPALTKLAKLQLNREF-------HLPRENCID-TLVLSRLIHSN------LKDTDMGLLRSGKLPGALEAWGYRLGE 128 (698)
T ss_dssp TTHHHHHHHHHHHHHCCCC-------CCCGGGEEE-HHHHHHHHTTT------SCCCTTTTSCGGGSCSCCCHHHHHHHH
T ss_pred HHHHHHHHHhhhhcccCCc-------cCCCCcchh-HHHHHHHhCCC------CCCCCHHHHHHHHcccchhhhcccccc
Confidence 99999998753 65 123 57999 99999999985 34789999999998 4333
Q ss_pred ---c-----------cccc-c--cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 016210 177 ---S-----------KELQ-C--SDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGN 221 (393)
Q Consensus 177 ---~-----------K~~q-~--sdWs~RPLs~~Ql~YAA~DA~~Ll~L~~~L~~~L~~~g~ 221 (393)
+ |+.+ . .+|.. +++++..||+.||.+++.|++.|.++|++.+.
T Consensus 129 ~Ki~~~~~~g~~~~~kg~~~~~~~~~~~--~~~~~~~YA~~Da~~t~~L~~~L~~~L~~~~~ 188 (698)
T 1x9m_A 129 MKGEYKDDFKRMLEEQGEEYVDGMEWWN--FNEEMMDYNVQDVVVTKALLEKLLSDKHYFPP 188 (698)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCTTGGGTS--CCHHHHHHHHHHHHHHHHHHHHHHTCTTTSCT
T ss_pred cccCHHHHhCcccccccccccccCCccc--cCHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 1 2211 1 27864 67899999999999999999999999988775
No 10
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=99.08 E-value=6.9e-11 Score=123.81 Aligned_cols=133 Identities=10% Similarity=-0.033 Sum_probs=106.5
Q ss_pred CeEEEEEEEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCCCchhhHHHHHHhhCCCCcEEEEEeh
Q 016210 33 SLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSIPLPSIWELLKELFVSPDILKLGFKF 112 (393)
Q Consensus 33 ~~Va~D~E~~~~~~~~~~~~~v~LlQIa~~~~~~~~~~~~~~~~~~v~LID~~~l~~~~~~~~L~~lLe~~~i~KVgh~~ 112 (393)
+.+++|+|...... +...++.+|++.. +.+|+++ ..+..|+++|++ +.||+||+
T Consensus 11 ~~valDtE~~~~~~---~~a~Lvgi~la~~--------------~~a~~i~-------~~l~~l~~~l~d--~~kV~hn~ 64 (540)
T 4dfk_A 11 EGAFVGFVLSRKEP---MWADLLALAAARG--------------GRVHRAP-------EPYKALRDLKEA--RGLLAKDL 64 (540)
T ss_dssp TTCEEEEEESSSCT---TTCCEEEEEEEET--------------TEEEECS-------SHHHHHTTCSSB--CSTTHHHH
T ss_pred CceEEEEEecCCcc---CcccEEEEEEEcC--------------CEEEEeh-------hhHHHHHHHHcC--CCEEEecc
Confidence 44999999988775 5678888999863 5677765 257889999998 78899999
Q ss_pred HhHHHHHHhhcccCCCcCCcCCCCceeeHHHHHHHHhccccCCCCCCCcccHHHHHHHHcCCcccccccccCCCCCCCCH
Q 016210 113 KQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKELLDISLSKELQCSDWSNRPLTE 192 (393)
Q Consensus 113 k~Dl~~L~~~~gi~g~~~~~~~~~~~fDlt~LA~yLl~~~~~~~~~~~~~sLa~Lve~~Lg~~L~K~~q~sdWs~RPLs~ 192 (393)
|+|+. + +|+ . .. .+|| |++++||+++. +++|++|+++|++. |..
T Consensus 65 K~Dl~---~-~Gi---~----~~-~~fD-T~laAyLL~p~--------~~~L~~La~~yl~~----------~gk----- 108 (540)
T 4dfk_A 65 SVLAL---R-EGL---G----LP-PGDD-PMLLAYLLDPS--------NTTPEGVARRYGGE----------WTE----- 108 (540)
T ss_dssp HHHHH---H-TTC---C----CC-BCCC-HHHHHHHHCTT--------CCCHHHHHHHHTSC----------CCS-----
T ss_pred HHHHH---H-cCC---C----CC-ccee-HHHHHHHhCCC--------CCCHHHHHHHHhhh----------hcc-----
Confidence 99999 3 555 2 23 7899 99999999983 68999999999976 211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhcCCC----ccccccccC
Q 016210 193 EQKNYAAIDAHCLIEIFNIFQVKV-AQKGNS----CSSISELDS 231 (393)
Q Consensus 193 ~Ql~YAA~DA~~Ll~L~~~L~~~L-~~~g~l----~~e~~~l~~ 231 (393)
+|+.||.++++|++.|.++| ++.+.. +.|||++..
T Consensus 109 ----~a~~DA~~t~~L~~~L~~~L~~~~~~~~~~~~iE~pl~~v 148 (540)
T 4dfk_A 109 ----EAGERAALSERLFANLWGRLEGEERLLWLYREVERPLSAV 148 (540)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHTHHHHHHH
T ss_pred ----chHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHH
Confidence 37799999999999999999 555544 788888753
No 11
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=98.39 E-value=4.2e-06 Score=77.77 Aligned_cols=172 Identities=12% Similarity=0.053 Sum_probs=100.9
Q ss_pred hHHHHHHHHHHcCCCeEEEEEEEeCCCCCCCCCCceeEEEEeccC-CCCCCCCCCCCCCCEEEEEeCC---C--------
Q 016210 19 SPEFTHLARALSQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQP-GPRFNPESDESNASVVFLLDLS---S-------- 86 (393)
Q Consensus 19 ~~el~~ll~~L~~~~~Va~D~E~~~~~~~~~~~~~v~LlQIa~~~-~~~~~~~~~~~~~~~v~LID~~---~-------- 86 (393)
.+++..+...+.....++||+|+++..+ . ...+++|+... ..+.++.-. ....-..+|.+. .
T Consensus 24 ~~~~~~l~~~l~~~~~vviD~ETTGl~~---~--~~~IieIgav~~~~~~~g~i~-~~~~f~~~v~P~~~~~i~~~~~~i 97 (235)
T 3v9w_A 24 NAQLTGLCDRFRGFYPVVIDVETAGFNA---K--TDALLEIAAITLKMDEQGWLM-PDTTLHFHVEPFVGANLQPEALAF 97 (235)
T ss_dssp -----CHHHHTTTEEEEEEEEEESSSCT---T--TBCEEEEEEEEEEECTTSCEE-EEEEEEEEBCCCTTCBCCHHHHHH
T ss_pred cccccCchhcccCCcEEEEEEeCCCCCC---C--CCeEEEEEEEEEEEcCCCccc-ccceEEEEECCCCCCCCCHHHHHH
Confidence 4567777888888889999999998764 2 34466665431 000000000 000011223331 0
Q ss_pred --CC----------chhhHHHHHHhhCC-------CCcEEEEEehHhHHHHHHhhcccCCCcCCcCC-CCceeeHHHHHH
Q 016210 87 --IP----------LPSIWELLKELFVS-------PDILKLGFKFKQDLIYLSSTFCSQGCDIGFDR-VEPYLDITSIYN 146 (393)
Q Consensus 87 --l~----------~~~~~~~L~~lLe~-------~~i~KVgh~~k~Dl~~L~~~~gi~g~~~~~~~-~~~~fDlt~LA~ 146 (393)
+. ..+++..|.+++.+ .+...|+||+++|+.+|.+.+.-.|+.. ... ...++| |+.++
T Consensus 98 ~GIt~e~~v~~~~~~~~vl~~~~~~l~~~~~~~~~~~~~lVahN~~fD~~~L~~~~~~~g~~~-~p~~~~~~~D-t~~la 175 (235)
T 3v9w_A 98 NGIDPNDPDRGAVSGYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKR-NPFHPFATFD-TAALA 175 (235)
T ss_dssp HCCCTTCGGGCCBCHHHHHHHHHHHHHHHHTTTTCCEEEEEETTTHHHHHHHHHHHHHTTCCC-CCEEEEEEEE-HHHHH
T ss_pred hCCCHHHHHhcCCCHHHHHHHHHHHHHHHhhhccCCCcEEEEeChHHHHHHHHHHHHHcCCCC-CCCCCCcEEE-hHHHH
Confidence 11 01245566666642 4577899999999999875432212110 000 135789 78888
Q ss_pred HHhccccCCCCCCCcccHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 016210 147 HLHHKQLGRKLPKETKSLANICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGNS 222 (393)
Q Consensus 147 yLl~~~~~~~~~~~~~sLa~Lve~~Lg~~L~K~~q~sdWs~RPLs~~Ql~YAA~DA~~Ll~L~~~L~~~L~~~g~l 222 (393)
+.+.+ .++|.++++.+ |+.... .+..+|..||.++.+|+..|.+++.+.|.+
T Consensus 176 ~~~~p---------~~~L~~l~~~~-gi~~~~--------------~~~H~Al~DA~~ta~l~~~l~~~l~~~~~~ 227 (235)
T 3v9w_A 176 GLALG---------QTVLSKACQTA-GMDFDS--------------TQAHSALYDTERTAVLFCEIVNRWKRLGGW 227 (235)
T ss_dssp HHHHS---------CCSHHHHHHHH-TCCCCT--------------TTTTCHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHhC---------CCCHHHHHHHc-CCCCCC--------------CCCcChHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 87765 36899999876 654421 112459999999999999999999988765
No 12
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=98.28 E-value=7.7e-07 Score=97.51 Aligned_cols=130 Identities=12% Similarity=0.057 Sum_probs=95.8
Q ss_pred CeEEEEEEEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCCCchhhHHHHHHhhCCCCcEEEEEeh
Q 016210 33 SLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSIPLPSIWELLKELFVSPDILKLGFKF 112 (393)
Q Consensus 33 ~~Va~D~E~~~~~~~~~~~~~v~LlQIa~~~~~~~~~~~~~~~~~~v~LID~~~l~~~~~~~~L~~lLe~~~i~KVgh~~ 112 (393)
+.+++|+|..+ . ....+| +++|.. .+.+++|++ . + +.|+++|+++.+ |+
T Consensus 305 ~~va~d~et~~--~---~~~~l~-vg~a~~-------------~g~a~yvp~-~----~--~~Lk~lLed~~i-----n~ 353 (832)
T 1bgx_T 305 AFVGFVLSRKE--P---MWADLL-ALAAAR-------------GGRVHRAPE-P----Y--KALRDLKEARGL-----LA 353 (832)
T ss_dssp CCBEEECSSSC--T---TTCCCC-EEECBS-------------SSEEECCSC-H----H--HHHHHCSSBCBT-----TH
T ss_pred ceEEEEEecCC--c---ccCcee-EEEEEc-------------CCCEEEEEC-C----H--HHHHHHHhCCCC-----Ch
Confidence 45788888655 2 123332 666653 356677654 1 1 579999999987 99
Q ss_pred HhHHHHHHhhcccCCCcCCcCCCCceeeHHHHHHHHhccccCCCCCCCcccHHHHHHHHcCCcccccccccCCCCCCCCH
Q 016210 113 KQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKELLDISLSKELQCSDWSNRPLTE 192 (393)
Q Consensus 113 k~Dl~~L~~~~gi~g~~~~~~~~~~~fDlt~LA~yLl~~~~~~~~~~~~~sLa~Lve~~Lg~~L~K~~q~sdWs~RPLs~ 192 (393)
|+|++.|.+ +|+ . +..+|| |+|++||+++. .++|++|+++| |. +|.
T Consensus 354 K~d~~~L~~-~Gi---~-----~~~~~D-t~laayLl~p~--------~~~l~~l~~~~-gk---------~~~------ 399 (832)
T 1bgx_T 354 KDLSVLALR-EGL---G-----LPPGDD-PMLLAYLLDPS--------NTTPEGVARRY-GG---------EWT------ 399 (832)
T ss_dssp HHHHHHHHH-HTC---C-----CCBCCC-HHHHHHHHCTT--------CCSTTHHHHHH-SC---------CCC------
T ss_pred HHHHHHHHH-cCC---c-----cCcccC-HHHHHHHcCCC--------CCCHHHHHHHh-CC---------Cch------
Confidence 999999988 666 2 237799 99999999973 68999999999 31 131
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hcCCC----cccccccc
Q 016210 193 EQKNYAAIDAHCLIEIFNIFQVKVA-QKGNS----CSSISELD 230 (393)
Q Consensus 193 ~Ql~YAA~DA~~Ll~L~~~L~~~L~-~~g~l----~~e~~~l~ 230 (393)
++ || .||.++++|++.|.++|. +.+.. ..|||++.
T Consensus 400 ~~--ya-~da~~~~~l~~~l~~~L~~~~~~~~l~~~iE~pl~~ 439 (832)
T 1bgx_T 400 EE--AG-ERAALSERLFANLWGRLEGEERLLWLYREVERPLSA 439 (832)
T ss_dssp SS--HH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHTTHHHHHH
T ss_pred HH--HH-HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 11 88 799999999999999998 65543 78888875
No 13
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=97.56 E-value=0.0007 Score=60.51 Aligned_cols=100 Identities=15% Similarity=0.171 Sum_probs=63.9
Q ss_pred hhHHHHHHhhCCCCcEEEEEehHhHHHHHHhhcccCCCcCCcCCCCceeeHHHHHHHHhccccCCCCCCCcccHHHHHHH
Q 016210 91 SIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKE 170 (393)
Q Consensus 91 ~~~~~L~~lLe~~~i~KVgh~~k~Dl~~L~~~~gi~g~~~~~~~~~~~fDlt~LA~yLl~~~~~~~~~~~~~sLa~Lve~ 170 (393)
+++..|..++.+. ..|+||+.+|+..|.+.+.-.|+.+ ....++|+..++..+. . ...++|.++++.
T Consensus 81 ~v~~~~~~~l~~~--~lv~hn~~fD~~~L~~~~~~~g~~~---~~~~~iDt~~l~~~~~--~------~~~~~L~~l~~~ 147 (186)
T 2p1j_A 81 EVLPEFLGFLEDS--IIVAHNANFDYRFLRLWIKKVMGLD---WERPYIDTLALAKSLL--K------LRSYSLDSVVEK 147 (186)
T ss_dssp HHHHHHHHHSSSC--EEEETTHHHHHHHHHHHHHHHHCCC---CCCCEEEHHHHHHHHT--C------CSCCSHHHHHHH
T ss_pred HHHHHHHHHHCCC--EEEEECcHHHHHHHHHHHHHcCCCC---CCCCEEeHHHHHHHHh--h------cCCCCHHHHHHH
Confidence 4566677777753 5599999999999875432112121 0246889544554444 1 247899999986
Q ss_pred HcCCcccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016210 171 LLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKG 220 (393)
Q Consensus 171 ~Lg~~L~K~~q~sdWs~RPLs~~Ql~YAA~DA~~Ll~L~~~L~~~L~~~g 220 (393)
+|++.... ..|..||..+..|+..+..+..++|
T Consensus 148 -~gi~~~~~----------------H~Al~Da~~t~~l~~~l~~~~~~~~ 180 (186)
T 2p1j_A 148 -LGLGPFRH----------------HRALDDARVTAQVFLRFVEMMKKEG 180 (186)
T ss_dssp -TTCCSTTC----------------CHHHHHHHHHHHHHHHHTTCC----
T ss_pred -cCCCCCCC----------------cCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 57764322 3488999999999998876655554
No 14
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=97.40 E-value=0.0012 Score=59.27 Aligned_cols=100 Identities=20% Similarity=0.183 Sum_probs=67.1
Q ss_pred hhHHHHHHhhCCCCcEEEEEehHhHHHHHHhhcccCCCcCCcCCCCceeeHHHHHHHH---hccccCCCCCCCcccHHHH
Q 016210 91 SIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHL---HHKQLGRKLPKETKSLANI 167 (393)
Q Consensus 91 ~~~~~L~~lLe~~~i~KVgh~~k~Dl~~L~~~~gi~g~~~~~~~~~~~fDlt~LA~yL---l~~~~~~~~~~~~~sLa~L 167 (393)
+++..|.+++.+ ...||||+.+|+..|...+. ...++|+..++... ..+. ...++|.++
T Consensus 72 ~v~~~~~~~l~~--~~lV~hn~~fD~~~L~~~~~----------~~~~idt~~~~~~~~~~~~p~------~~~~~L~~l 133 (189)
T 1wlj_A 72 VARLEILQLLKG--KLVVGHDLKHDFQALKEDMS----------GYTIYDTSTDRLLWREAKLDH------CRRVSLRVL 133 (189)
T ss_dssp HHHHHHHHHHTT--SEEEESSHHHHHHHTTCCCT----------TCEEEEGGGCHHHHHHHTC-----------CCHHHH
T ss_pred HHHHHHHHHHCC--CEEEECCcHHHHHHHHHhCC----------CCceechHhhhhhhhcccCCC------CCCccHHHH
Confidence 456677788864 45699999999999876421 13578943332211 1111 137899999
Q ss_pred HHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 016210 168 CKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGN 221 (393)
Q Consensus 168 ve~~Lg~~L~K~~q~sdWs~RPLs~~Ql~YAA~DA~~Ll~L~~~L~~~L~~~g~ 221 (393)
+++++|++........ -|..||.++.+|+..+.+++++.+.
T Consensus 134 ~~~~lgi~~~~~~~~H-------------~Al~Da~ata~l~~~l~~~~~~~~~ 174 (189)
T 1wlj_A 134 SERLLHKSIQNSLLGH-------------SSVEDARATMELYQISQRIRARRGL 174 (189)
T ss_dssp HHHHTCCCCSCCTTCC-------------CHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCCCCCCCCCc-------------CcHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9998998875421111 2889999999999999999887654
No 15
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=96.97 E-value=0.013 Score=53.70 Aligned_cols=92 Identities=16% Similarity=0.208 Sum_probs=60.5
Q ss_pred CcEEEEEehHhHHHHHHhhcccCCCc--CCcCCCCceeeHHHHHHHHhccccCCCCCCCcccHHHHHHHHcCCccccccc
Q 016210 104 DILKLGFKFKQDLIYLSSTFCSQGCD--IGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKELLDISLSKELQ 181 (393)
Q Consensus 104 ~i~KVgh~~k~Dl~~L~~~~gi~g~~--~~~~~~~~~fDlt~LA~yLl~~~~~~~~~~~~~sLa~Lve~~Lg~~L~K~~q 181 (393)
....|+||+.+|+..|.+.+.-.|+. | |. ...++|+..++..+. + .++|..+++. +|+++....
T Consensus 126 ~~~lV~hn~~FD~~fL~~~~~~~g~~~~p-~~-~~~~iDt~~l~~~~~-~---------~~~L~~l~~~-~gi~~~~~~- 191 (224)
T 2f96_A 126 RAILVGHNSSFDLGFLNAAVARTGIKRNP-FH-PFSSFDTATLAGLAY-G---------QTVLAKACQA-AGMEFDNRE- 191 (224)
T ss_dssp EEEEEETTHHHHHHHHHHHHHHHTCCCCC-EE-EEEEEEHHHHHHHHH-S---------CCSHHHHHHH-TTCCCCTTS-
T ss_pred CCEEEEeChhhhHHHHHHHHHHcCCCcCC-cc-ccceeeHHHHHHHHc-C---------CCCHHHHHHH-cCCCcCCCC-
Confidence 45569999999999987543221211 0 00 135789444544443 2 3689999886 587653211
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 016210 182 CSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGNS 222 (393)
Q Consensus 182 ~sdWs~RPLs~~Ql~YAA~DA~~Ll~L~~~L~~~L~~~g~l 222 (393)
. ..|..||.++.+|+..+..++.+.|.+
T Consensus 192 ~-------------H~Al~Da~~ta~l~~~l~~~~~~~~~~ 219 (224)
T 2f96_A 192 A-------------HSARYDTEKTAELFCGIVNRWKEMGGW 219 (224)
T ss_dssp C-------------CCHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred C-------------CChHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 1 128899999999999999999887654
No 16
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=96.08 E-value=0.028 Score=51.68 Aligned_cols=110 Identities=17% Similarity=0.195 Sum_probs=66.8
Q ss_pred hhHHHHHHhhCCC--CcEEEEEeh-HhHHHHHHhhcccCCCcCCcCCCCceeeHHHHHHHHhcccc-CCCCC-CCcccHH
Q 016210 91 SIWELLKELFVSP--DILKLGFKF-KQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQL-GRKLP-KETKSLA 165 (393)
Q Consensus 91 ~~~~~L~~lLe~~--~i~KVgh~~-k~Dl~~L~~~~gi~g~~~~~~~~~~~fDlt~LA~yLl~~~~-~~~~~-~~~~sLa 165 (393)
++...|..++..- ....|+||+ .+|+..|.+.+.-.|.. +.....++|+..++..+..... ....| ...++|.
T Consensus 98 ~v~~~l~~fl~~~~~~~~lVahN~~~FD~~fL~~~~~~~g~~--~~~~~~~iDt~~l~~~~~~~~~p~~~~p~~~~~~L~ 175 (238)
T 1y97_A 98 AVVRTLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGAR--LPRDTVCLDTLPALRGLDRAHSHGTRARGRQGYSLG 175 (238)
T ss_dssp HHHHHHHHHHTTSCSSEEEEETTTTTTHHHHHHHHHHHHTCC--CCTTCEEEEHHHHHHHHHHHC----------CCSHH
T ss_pred HHHHHHHHHHHhCCCCCEEEecCchhhhHHHHHHHHHHcCCC--CCCCCEEEEHHHHHHHHHhccCccccCCCCCCCCHH
Confidence 3566778888762 156699999 99999987543221222 1101357994445555541000 00000 2478999
Q ss_pred HHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016210 166 NICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQ 218 (393)
Q Consensus 166 ~Lve~~Lg~~L~K~~q~sdWs~RPLs~~Ql~YAA~DA~~Ll~L~~~L~~~L~~ 218 (393)
+++++++|+..... +.|..||..+.+|+..+.+++.+
T Consensus 176 ~l~~~~~gi~~~~~----------------H~Al~Da~~ta~l~~~l~~~~~~ 212 (238)
T 1y97_A 176 SLFHRYFRAEPSAA----------------HSAEGDVHTLLLIFLHRAAELLA 212 (238)
T ss_dssp HHHHHHHSSCCC-------------------CHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHhCCCCccC----------------ccHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888765322 33889999999999988877654
No 17
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=95.82 E-value=0.035 Score=51.75 Aligned_cols=110 Identities=14% Similarity=0.065 Sum_probs=69.0
Q ss_pred hhHHHHHHhhCC--CCcEEEEEeh-HhHHHHHHhhcccCCCcCCcCCC-CceeeHHHHHHHHhccccCC-CCCCCcccHH
Q 016210 91 SIWELLKELFVS--PDILKLGFKF-KQDLIYLSSTFCSQGCDIGFDRV-EPYLDITSIYNHLHHKQLGR-KLPKETKSLA 165 (393)
Q Consensus 91 ~~~~~L~~lLe~--~~i~KVgh~~-k~Dl~~L~~~~gi~g~~~~~~~~-~~~fDlt~LA~yLl~~~~~~-~~~~~~~sLa 165 (393)
+++..|.+++.+ +....|+||+ .+|+..|.+.+.-.|+. +... ..++|+..++..+....... .....+++|+
T Consensus 103 ev~~~~~~fl~~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~--~~~~~~~~iDtl~l~r~l~~~~~p~~~~~~~~~~L~ 180 (242)
T 3mxm_B 103 NLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTP--SPLDGTFCVDSIAALKALEQASSPSGNGSRKSYSLG 180 (242)
T ss_dssp HHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSC--CTTTTCEEEEHHHHHHHHHHHHCC------CCCSHH
T ss_pred HHHHHHHHHHhcCCCCCEEEEcCChHhhHHHHHHHHHHcCCC--CCccCCeEeehHHHHHHHHhhcCccccCCCCCcCHH
Confidence 566677778876 1245699996 99999987653222322 1001 25789555555444210000 0012478999
Q ss_pred HHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016210 166 NICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQ 218 (393)
Q Consensus 166 ~Lve~~Lg~~L~K~~q~sdWs~RPLs~~Ql~YAA~DA~~Ll~L~~~L~~~L~~ 218 (393)
+++++++|++....|+ |..||.++.+|+..+..++.+
T Consensus 181 ~l~~~~~gi~~~~~H~----------------Al~Da~ata~l~~~~~~~~~~ 217 (242)
T 3mxm_B 181 SIYTRLYWQAPTDSHT----------------AEGDDLTLLSICQWKPQALLQ 217 (242)
T ss_dssp HHHHHHHSSCCSSTTS----------------HHHHHHHHHHHHTSSHHHHHH
T ss_pred HHHHHHhCCCCCCCcC----------------hHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988754332 889999999998887776654
No 18
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=95.78 E-value=0.15 Score=52.38 Aligned_cols=159 Identities=15% Similarity=0.084 Sum_probs=85.0
Q ss_pred cCCCeEEEEEEEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCC-C--C------------------
Q 016210 30 SQSSLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSS-I--P------------------ 88 (393)
Q Consensus 30 ~~~~~Va~D~E~~~~~~~~~~~~~v~LlQIa~~~~~~~~~~~~~~~~~~v~LID~~~-l--~------------------ 88 (393)
.....|.||+|+++..+ . .-.++||+.-. .+.++... +..-..+|.+.. + .
T Consensus 7 ~~~~~vv~DlETTGl~p---~--~d~IIEIgaV~-vd~~g~ii--~~~f~~lVkP~~~ilp~p~a~~IhGIT~e~l~~ap 78 (482)
T 2qxf_A 7 QQSTFLFHDYETFGTHP---A--LDRPAQFAAIR-TDSEFNVI--GEPEVFYCKPADDYLPQPGAVLITGITPQEARAKG 78 (482)
T ss_dssp CCCEEEEEEEEESSSCT---T--TSCEEEEEEEE-ECTTSCBC--SCCEEEEBCCCTTCCCCHHHHHHHCCCHHHHHHHC
T ss_pred CCCCEEEEEEECCCCCC---C--CCeEEEEEEEE-EECCCeEE--eeeeEEEECCCCCCCCCHHHHHHhCCCHHHHhcCC
Confidence 34568999999998764 1 23477775421 11111100 011334554332 1 0
Q ss_pred --chhhHHHHHHhhCCCCcEEEEEe-hHhHHHHHHhhcccCCCcCCcCC----CCceeeHHHHHHHHhc--cc---cC-C
Q 016210 89 --LPSIWELLKELFVSPDILKLGFK-FKQDLIYLSSTFCSQGCDIGFDR----VEPYLDITSIYNHLHH--KQ---LG-R 155 (393)
Q Consensus 89 --~~~~~~~L~~lLe~~~i~KVgh~-~k~Dl~~L~~~~gi~g~~~~~~~----~~~~fDlt~LA~yLl~--~~---~~-~ 155 (393)
..++...|..++..++.+.|||| +.+|...|...+.-.|..+ +.. ....+|+..++..+.. +. +. +
T Consensus 79 ~~~~evl~~f~~~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~-~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~~ 157 (482)
T 2qxf_A 79 ENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDP-YAWSWQHDNSRWDLLDVMRACYALRPEGINWPEN 157 (482)
T ss_dssp BCHHHHHHHHHHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCS-SGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBC
T ss_pred CCHHHHHHHHHHHHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCc-cccccccCCceeeHHHHHHHHHHhCcccccCccc
Confidence 02345566777874556779999 8999998865432112121 100 0456785555554431 10 00 0
Q ss_pred CCCCCcccHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016210 156 KLPKETKSLANICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQV 214 (393)
Q Consensus 156 ~~~~~~~sLa~Lve~~Lg~~L~K~~q~sdWs~RPLs~~Ql~YAA~DA~~Ll~L~~~L~~ 214 (393)
......++|.++++. +|++....+. |..||.++..|+..+..
T Consensus 158 ~~~~~s~kL~~L~~~-~Gi~~~~aHr----------------AL~DA~aTa~l~~~l~~ 199 (482)
T 2qxf_A 158 DDGLPSFRLEHLTKA-NGIEHSNAHD----------------AMADVYATIAMAKLVKT 199 (482)
T ss_dssp TTSSBCCCHHHHHHH-TTCCCC---C----------------TTHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHH-cCCCCCCCCC----------------HHHHHHHHHHHHHHHHH
Confidence 001236899999875 4776533232 66788888888877754
No 19
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=95.39 E-value=0.06 Score=47.81 Aligned_cols=100 Identities=15% Similarity=0.155 Sum_probs=61.2
Q ss_pred hhHHHHHHhhCCCCcEEEEEehHhHHHHHHhhcccCCCc-CCcCCCCceeeHHHHHHHHhccccCCCCCCCcccHHHHHH
Q 016210 91 SIWELLKELFVSPDILKLGFKFKQDLIYLSSTFCSQGCD-IGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICK 169 (393)
Q Consensus 91 ~~~~~L~~lLe~~~i~KVgh~~k~Dl~~L~~~~gi~g~~-~~~~~~~~~fDlt~LA~yLl~~~~~~~~~~~~~sLa~Lve 169 (393)
+++..|..++.+. ..|+||+.+|+..|.+.+.-.|.. |.|.....++|+..++..+ .+. ..++|.++++
T Consensus 84 ~v~~~~~~~l~~~--~lv~hn~~fD~~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~-~p~-------~~~~L~~l~~ 153 (194)
T 2gui_A 84 EVADEFMDYIRGA--ELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKM-FPG-------KRNSLDALCA 153 (194)
T ss_dssp HHHHHHHHHHTTS--EEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHH-STT-------SCCSHHHHHH
T ss_pred HHHHHHHHHHCCC--eEEEEchHHhHHHHHHHHHHcCCCCccccccCceeeHHHHHHHH-cCC-------CCCCHHHHHH
Confidence 4566677788754 359999999999987543211221 1010013689944444443 332 2579999998
Q ss_pred HHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 016210 170 ELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVK 215 (393)
Q Consensus 170 ~~Lg~~L~K~~q~sdWs~RPLs~~Ql~YAA~DA~~Ll~L~~~L~~~ 215 (393)
. +|++.... ... -|..||.++.+|+..+..+
T Consensus 154 ~-~gi~~~~~-~~H-------------~Al~Da~~ta~l~~~l~~~ 184 (194)
T 2gui_A 154 R-YEIDNSKR-TLH-------------GALLDAQILAEVYLAMTGG 184 (194)
T ss_dssp H-TTCCCTTC-SSC-------------CHHHHHHHHHHHHHHHTC-
T ss_pred H-cCcCCCCC-CCC-------------ChHHHHHHHHHHHHHHHhc
Confidence 6 58765321 011 1889999999999877543
No 20
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=95.39 E-value=0.072 Score=51.90 Aligned_cols=111 Identities=13% Similarity=0.066 Sum_probs=68.6
Q ss_pred hhHHHHHHhhCC--CCcEEEEEe-hHhHHHHHHhhcccCCCcCCcCCCCceeeHHHHHHHHhccccCC-CCCCCcccHHH
Q 016210 91 SIWELLKELFVS--PDILKLGFK-FKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGR-KLPKETKSLAN 166 (393)
Q Consensus 91 ~~~~~L~~lLe~--~~i~KVgh~-~k~Dl~~L~~~~gi~g~~~~~~~~~~~fDlt~LA~yLl~~~~~~-~~~~~~~sLa~ 166 (393)
+++..|.+++.+ +....|+|| +.+|+..|.+.+.-.|+...+ ....++|+..++..+....+.. .....+++|++
T Consensus 103 ev~~~l~~fL~~~~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~~-~~~~~iDTL~l~r~L~r~~~P~~~~~~~~~~L~~ 181 (314)
T 3u3y_B 103 NLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPL-DGTFCVDSIAALKALEQASSPSGNGSRKSYSLGS 181 (314)
T ss_dssp HHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTT-TTCEEEEHHHHHHHHHTTC-------CCCCSHHH
T ss_pred HHHHHHHHHHhcCCCCcEEEEeCcHHHHHHHHHHHHHHcCCCCCC-CCceEEeHHHHHHHHHHHhCccccccCCCCCHHH
Confidence 456667778876 225669999 999999987654322322100 0124789433343343211100 01124789999
Q ss_pred HHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016210 167 ICKELLDISLSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQ 218 (393)
Q Consensus 167 Lve~~Lg~~L~K~~q~sdWs~RPLs~~Ql~YAA~DA~~Ll~L~~~L~~~L~~ 218 (393)
++++|+|++....|. |..||.++.+|+..+.+++.+
T Consensus 182 L~~~l~gi~~~~aHr----------------Al~DA~ata~lf~~l~~~~l~ 217 (314)
T 3u3y_B 182 IYTRLYWQAPTDSHT----------------AEGHVLTLLSICQWKPQALLQ 217 (314)
T ss_dssp HHHHHHSSCCSCSSS----------------HHHHHHHHHHHHHSSHHHHHH
T ss_pred HHHHhcCCCCCCCCC----------------HHHHHHHHHHHHHHHHHHHHH
Confidence 999988988654342 889999999999888776653
No 21
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=94.32 E-value=0.13 Score=45.87 Aligned_cols=98 Identities=9% Similarity=0.080 Sum_probs=61.9
Q ss_pred hhHHHHHHhhCCCC-----cEEEEEehHhHHH-HHHhhcccCCCcCCcCCC---CceeeHHHHHHHHhccccCCCCCCCc
Q 016210 91 SIWELLKELFVSPD-----ILKLGFKFKQDLI-YLSSTFCSQGCDIGFDRV---EPYLDITSIYNHLHHKQLGRKLPKET 161 (393)
Q Consensus 91 ~~~~~L~~lLe~~~-----i~KVgh~~k~Dl~-~L~~~~gi~g~~~~~~~~---~~~fDlt~LA~yLl~~~~~~~~~~~~ 161 (393)
+++..|.+++.+.. ...|+||+.+|+. .|.+.+...|+. .+ ..++|+..++..+.... ...
T Consensus 87 ~v~~~~~~~l~~~~~~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~----~p~~~~~~~dt~~l~~~~~~~~------~~~ 156 (204)
T 1w0h_A 87 QVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLK----YPPFAKKWINIRKSYGNFYKVP------RSQ 156 (204)
T ss_dssp HHHHHHHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCC----CCGGGSEEEEHHHHHHHHHTCC------GGG
T ss_pred HHHHHHHHHHHhcCCCCCCcEEEEEECcchHHHHHHHHHHHhCCC----CcccccceEEHHHHHHHHhCCC------Ccc
Confidence 34556666666543 3459999999996 886543211211 12 26899656665554321 125
Q ss_pred ccHHHHHHHHcCCcccc-cccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 016210 162 KSLANICKELLDISLSK-ELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVK 215 (393)
Q Consensus 162 ~sLa~Lve~~Lg~~L~K-~~q~sdWs~RPLs~~Ql~YAA~DA~~Ll~L~~~L~~~ 215 (393)
++|.++++. +|++... .+. |..||.++.+|+..+..+
T Consensus 157 ~~L~~l~~~-~gi~~~~~~H~----------------Al~Da~~ta~l~~~l~~~ 194 (204)
T 1w0h_A 157 TKLTIMLEK-LGMDYDGRPHC----------------GLDDSKNIARIAVRMLQD 194 (204)
T ss_dssp CSHHHHHHH-TTCCCCSCTTC----------------HHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHH-cCCCCCCCccC----------------cHHHHHHHHHHHHHHHHC
Confidence 799999977 5876532 222 889999999998887643
No 22
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=91.98 E-value=0.63 Score=42.33 Aligned_cols=96 Identities=15% Similarity=0.182 Sum_probs=55.9
Q ss_pred hhHHHHHHhhCCCCcEEEEEeh--------HhHHHH-HHhhcccCCCcCCcCCCCceeeHHHHHHHHhccccCCCCCCCc
Q 016210 91 SIWELLKELFVSPDILKLGFKF--------KQDLIY-LSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKET 161 (393)
Q Consensus 91 ~~~~~L~~lLe~~~i~KVgh~~--------k~Dl~~-L~~~~gi~g~~~~~~~~~~~fDlt~LA~yLl~~~~~~~~~~~~ 161 (393)
+++..+.+++.+..+ |+||+ ..|+.. |.+.+...|+.. ......++|+...+...... . ..
T Consensus 106 ~v~~~f~~~l~~~~l--v~hn~~~~~~t~g~fD~~fll~~~~~~~g~~~-p~~~~~~iD~~~~~~~~~~~-----~--p~ 175 (224)
T 2xri_A 106 QVLERVDEWMAKEGL--LDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPV-ADYFKQWINLKKAYSFAMGC-----W--PK 175 (224)
T ss_dssp HHHHHHHHHHHHTTT--TSTTSCEEEEESSSHHHHTHHHHHHHHHTCCC-CGGGSCEEEHHHHHHHHHTS-----C--CT
T ss_pred HHHHHHHHHHhhccc--ccCCCceEEEEeChhhHHHHHHHHHHHhCCCC-cccccceEeHHHHHHHHhcc-----C--CC
Confidence 455666777776544 78998 999985 643222112220 00013578954333222211 1 24
Q ss_pred ccHHHHHHHHcCCcccc-cccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016210 162 KSLANICKELLDISLSK-ELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQ 213 (393)
Q Consensus 162 ~sLa~Lve~~Lg~~L~K-~~q~sdWs~RPLs~~Ql~YAA~DA~~Ll~L~~~L~ 213 (393)
++|.++++ .+|++... .+ -|..||..+.+|+..|.
T Consensus 176 ~~L~~l~~-~~gi~~~~~~H----------------~Al~DA~~ta~l~~~l~ 211 (224)
T 2xri_A 176 NGLLDMNK-GLSLQHIGRPH----------------SGIDDCKNIANIMKTLA 211 (224)
T ss_dssp TTHHHHHH-HTTCCCCSCTT----------------CHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHH-HcCCCCCCCCc----------------ChHHHHHHHHHHHHHHH
Confidence 79999987 55765421 12 28899999999888775
No 23
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=90.87 E-value=2.7 Score=36.35 Aligned_cols=32 Identities=16% Similarity=-0.076 Sum_probs=23.3
Q ss_pred hhHHHHHHhhCCC----CcEEEEEehHhHHHHHHhh
Q 016210 91 SIWELLKELFVSP----DILKLGFKFKQDLIYLSST 122 (393)
Q Consensus 91 ~~~~~L~~lLe~~----~i~KVgh~~k~Dl~~L~~~ 122 (393)
+++..|.+++.+- ....||||+.+|+..|.+.
T Consensus 83 ~v~~~~~~~l~~~~~~~~~~lv~hn~~fD~~fL~~~ 118 (180)
T 2igi_A 83 EAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKY 118 (180)
T ss_dssp HHHHHHHHHHTTTSCTTTSCEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCceEEecCHHHHHHHHHHH
Confidence 3456667777751 2456999999999999864
No 24
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=90.62 E-value=4.4 Score=43.85 Aligned_cols=158 Identities=13% Similarity=0.183 Sum_probs=88.3
Q ss_pred CeEEEEEEEeCCCCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCC------CCc-hhhHHHHHHhhC--CC
Q 016210 33 SLVGLDAEWKPQRSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSS------IPL-PSIWELLKELFV--SP 103 (393)
Q Consensus 33 ~~Va~D~E~~~~~~~~~~~~~v~LlQIa~~~~~~~~~~~~~~~~~~v~LID~~~------l~~-~~~~~~L~~lLe--~~ 103 (393)
..++||.|..+... .....-.+++|+... ..+..++...... ... .+.+..+..++. +|
T Consensus 136 ~ilsfDIEt~~~~~--p~~~~d~Ii~Is~~~----------~~~~~~~t~~~i~~~~v~~~~~E~~LL~~f~~~i~~~dP 203 (775)
T 1qht_A 136 TMLAFAIATLYHEG--EEFGTGPILMISYAD----------GSEARVITWKKIDLPYVDVVSTEKEMIKRFLRVVREKDP 203 (775)
T ss_dssp CEEEEEEEECCCTT--CCTTCSCEEEEEEEC----------SSCEEEEESSCCCCSSEEECSCHHHHHHHHHHHHHHHCC
T ss_pred EEEEEEEEEcCCCC--CCCCCCcEEEEEEEe----------cCCCeeEeeccccccceEEcCCHHHHHHHHHHHHHhcCC
Confidence 67899999986321 111233467777641 0122222211100 111 234555555554 56
Q ss_pred CcEEEEEehH-hHHHHHHhh---cccCCCcCCcC------------------CC-CceeeHHHHHHHHhccccCCCCCCC
Q 016210 104 DILKLGFKFK-QDLIYLSST---FCSQGCDIGFD------------------RV-EPYLDITSIYNHLHHKQLGRKLPKE 160 (393)
Q Consensus 104 ~i~KVgh~~k-~Dl~~L~~~---~gi~g~~~~~~------------------~~-~~~fDlt~LA~yLl~~~~~~~~~~~ 160 (393)
+++ ||||.. +|+.+|.+. +|+ ...+. .. ...+|+-.++...... .
T Consensus 204 Dii-vGyN~~~FDlpyL~~Ra~~~gi---~~~lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k~~~~l--------~ 271 (775)
T 1qht_A 204 DVL-ITYNGDNFDFAYLKKRCEELGI---KFTLGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTINL--------P 271 (775)
T ss_dssp SEE-EESSTTTTHHHHHHHHHHHTTC---CCCCSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHHHSCC--------S
T ss_pred CEE-EEeCCCCccHHHHHHHHHHcCC---CcccccCCCcCceeecCceeeEEecCeEEEEHHHHHHHhcCc--------C
Confidence 654 999975 799987542 333 21110 01 2467965555543322 3
Q ss_pred cccHHHHHHHHcCCcccc--ccccc-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016210 161 TKSLANICKELLDISLSK--ELQCS-DWSNRPLTEEQKNYAAIDAHCLIEIFNIFQV 214 (393)
Q Consensus 161 ~~sLa~Lve~~Lg~~L~K--~~q~s-dWs~RPLs~~Ql~YAA~DA~~Ll~L~~~L~~ 214 (393)
+++|.++++++||..... ..+.. -|...+--..-+.|...||..++.|+..+..
T Consensus 272 sysL~~Va~~~Lg~~K~dv~~~~i~~~~~~~~~l~~l~~Y~~~Da~lt~~L~~~~~~ 328 (775)
T 1qht_A 272 TYTLEAVYEAVFGKPKEKVYAEEIAQAWESGEGLERVARYSMEDAKVTYELGREFFP 328 (775)
T ss_dssp CCCHHHHHHHHHCCCCCCCCHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhCCCCCccCHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 789999999999975321 11222 2544431166789999999999999876654
No 25
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=90.52 E-value=1.2 Score=42.34 Aligned_cols=101 Identities=10% Similarity=0.074 Sum_probs=62.5
Q ss_pred hhHHHHHHhhCCCC-----cEEEEEehHhHHH-HHHhhcccCCCcCCcCCCCceeeHHHHHHHHhccccCCCCCCCcccH
Q 016210 91 SIWELLKELFVSPD-----ILKLGFKFKQDLI-YLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSL 164 (393)
Q Consensus 91 ~~~~~L~~lLe~~~-----i~KVgh~~k~Dl~-~L~~~~gi~g~~~~~~~~~~~fDlt~LA~yLl~~~~~~~~~~~~~sL 164 (393)
+++..|.+++.+.. ...|+||+.+|+. .|...+...|+.. -.....++|+..++..+.+.. ...++|
T Consensus 155 evl~~f~~~l~~~~~~~~~~~lVahn~~fD~~~fL~~~~~~~g~~~-p~~~~~~iDt~~l~~~~~~~~------~~~~~L 227 (299)
T 1zbh_A 155 QVLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKY-PPFAKKWINIRKSYGNFYKVP------RSQTKL 227 (299)
T ss_dssp HHHHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCC-CGGGSEEEEHHHHHHHHHTCC------GGGCSH
T ss_pred HHHHHHHHHHhhcccCCCCcEEEEEeCHHHHHHHHHHHHHHcCCCC-CcccchHHHHHHHHHHHhCCC------CCCccH
Confidence 35556666776541 3569999999999 8865432112220 000125889555555444321 124899
Q ss_pred HHHHHHHcCCcccc-cccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 016210 165 ANICKELLDISLSK-ELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVK 215 (393)
Q Consensus 165 a~Lve~~Lg~~L~K-~~q~sdWs~RPLs~~Ql~YAA~DA~~Ll~L~~~L~~~ 215 (393)
.++++. +|++... .|. |..||.++.+|+..+..+
T Consensus 228 ~~l~~~-~gi~~~g~~H~----------------Al~DA~ata~l~~~l~~~ 262 (299)
T 1zbh_A 228 TIMLEK-LGMDYDGRPNC----------------GLDDSKNIARIAVRMLQD 262 (299)
T ss_dssp HHHHHH-TTCCCCSCTTC----------------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHH-cCCCCCCCCCC----------------hHHHHHHHHHHHHHHHHh
Confidence 999986 5776532 222 889999999998887654
No 26
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=89.55 E-value=1.6 Score=42.86 Aligned_cols=101 Identities=10% Similarity=0.078 Sum_probs=62.4
Q ss_pred hhHHHHHHhhCCCC-----cEEEEEehHhHHH-HHHhhcccCCCcCCcCCCCceeeHHHHHHHHhccccCCCCCCCcccH
Q 016210 91 SIWELLKELFVSPD-----ILKLGFKFKQDLI-YLSSTFCSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSL 164 (393)
Q Consensus 91 ~~~~~L~~lLe~~~-----i~KVgh~~k~Dl~-~L~~~~gi~g~~~~~~~~~~~fDlt~LA~yLl~~~~~~~~~~~~~sL 164 (393)
+++..|..++.+.. ...|+||+.+|+. +|...+...|+.. -.....++|+..++..+.+.. ...++|
T Consensus 205 eVl~~f~~~l~~~~~~~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~-p~~~~~~iDt~~l~~~~~~~~------~~~~~L 277 (349)
T 1zbu_A 205 QVLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKY-PPFAKKWINIRKSYGNFYKVP------RSQTKL 277 (349)
T ss_dssp HHHHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCC-CGGGSEEEEHHHHHHHHHTCC------GGGGSH
T ss_pred HHHHHHHHHHhcccccCCCcEEEEECcHhhHHHHHHHHHHHhCCCC-ccccchHHHHHHHHHHHhcCC------CCCCCH
Confidence 34556666776541 3569999999999 8865432212210 001135889655555444321 124899
Q ss_pred HHHHHHHcCCcccc-cccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 016210 165 ANICKELLDISLSK-ELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVK 215 (393)
Q Consensus 165 a~Lve~~Lg~~L~K-~~q~sdWs~RPLs~~Ql~YAA~DA~~Ll~L~~~L~~~ 215 (393)
.+|++. +|++... .|. |..||.++.+|+..+..+
T Consensus 278 ~~l~~~-~gi~~~g~~Hr----------------Al~DA~ata~ll~~ll~~ 312 (349)
T 1zbu_A 278 TIMLEK-LGMDYDGRPHC----------------GLDDSKNIARIAVRMLQD 312 (349)
T ss_dssp HHHHHH-TTCCCCSCTTC----------------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHH-cCCCCCCCCCC----------------HHHHHHHHHHHHHHHHHh
Confidence 999976 5776532 222 889999999998887654
No 27
>1wud_A ATP-dependent DNA helicase RECQ; DNA-binding domain, HRDC, hydrolase; 2.20A {Escherichia coli} SCOP: a.60.8.1
Probab=87.69 E-value=0.054 Score=42.87 Aligned_cols=45 Identities=16% Similarity=0.137 Sum_probs=35.9
Q ss_pred hHHHHHHHHhh------hhcCCCCc-ccccccc---ccCCCCCHHHHHHHHhhcc
Q 016210 258 EALDIIRATSY------YSQCLPEG-VVSRVSY---LNTMPMDESLVKIVRKYGE 302 (393)
Q Consensus 258 ~~~~~~~~~~~------~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~ 302 (393)
++++++++||. +.+++||. |++|.++ |...|.+...|..|+++|+
T Consensus 11 ~~~~l~~~L~~wR~~~A~~~~vpp~~If~D~tL~eiA~~~P~t~~eL~~i~Gvg~ 65 (89)
T 1wud_A 11 YDRKLFAKLRKLRKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGM 65 (89)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSCHHHHCCHHHHHHHHHHCCCSHHHHHTSTTCCH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcceeeCHHHHHHHHHhCCCCHHHHhhCCCCCH
Confidence 45667777755 66699999 8999888 9999999999987766654
No 28
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=82.58 E-value=7.7 Score=34.40 Aligned_cols=33 Identities=18% Similarity=0.038 Sum_probs=22.5
Q ss_pred hhHHHHHHhhCC----CCcEEEEEehHhHHHHHHhhc
Q 016210 91 SIWELLKELFVS----PDILKLGFKFKQDLIYLSSTF 123 (393)
Q Consensus 91 ~~~~~L~~lLe~----~~i~KVgh~~k~Dl~~L~~~~ 123 (393)
++...+.+++.. .+...||||+.+|...|.+.+
T Consensus 87 ev~~~~l~fl~~~~~~~~~~lvghn~~FD~~FL~~~~ 123 (186)
T 3tr8_A 87 EAETLTLAFLEKYVSAGKSPLCGNSVCQDRRFLSRYM 123 (186)
T ss_dssp HHHHHHHHHHTTTSCTTCSCEEESSTHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccCCCcEEEEEcHHHhHHHHHHHH
Confidence 455566667731 233459999999999998753
No 29
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=82.14 E-value=1.4 Score=42.28 Aligned_cols=100 Identities=13% Similarity=0.193 Sum_probs=57.9
Q ss_pred hhHHHHHHhhCCCCcEEEEEeh------HhHH-HHHHhhcccCCCcCCcCCC---CceeeHHHHHHHHhccccCCCCCCC
Q 016210 91 SIWELLKELFVSPDILKLGFKF------KQDL-IYLSSTFCSQGCDIGFDRV---EPYLDITSIYNHLHHKQLGRKLPKE 160 (393)
Q Consensus 91 ~~~~~L~~lLe~~~i~KVgh~~------k~Dl-~~L~~~~gi~g~~~~~~~~---~~~fDlt~LA~yLl~~~~~~~~~~~ 160 (393)
+++..|.+++.+..+ |+||+ ..|+ ..|.+.+...|+. .+ ..++|+..++..+........ ...
T Consensus 97 evl~~f~~~l~~~~l--vahn~~lv~~g~fD~~~fL~~~~~~~g~~----~p~~~~~~iDt~~l~~~~~~~~~~~~-~~~ 169 (308)
T 3cg7_A 97 VVYEQFQQWLITLGL--EEGKFAFVCDSRQDLWRIAQYQMKLSNIQ----MPAFFRQYINLYKIFTNEMDRMGPKE-LSA 169 (308)
T ss_dssp HHHHHHHHHHHHHCC--CTTSEEEEESSSHHHHTHHHHHHHHTTCC----CCGGGSEEEEHHHHHHHHHHHHCCCC-CCC
T ss_pred HHHHHHHHHHHhCCc--CCcceEEeccCcccHHHHHHHHHHHcCCC----CchhhcceeeHHHHHHHHhccccccc-ccc
Confidence 345566667765443 56666 8998 5665432211222 12 357896566665544220000 001
Q ss_pred cccHHHHHHHHcCCccccc-ccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016210 161 TKSLANICKELLDISLSKE-LQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQV 214 (393)
Q Consensus 161 ~~sLa~Lve~~Lg~~L~K~-~q~sdWs~RPLs~~Ql~YAA~DA~~Ll~L~~~L~~ 214 (393)
.++|.++++ ++|++.... |. |..||.++.+|+..+..
T Consensus 170 ~~~L~~l~~-~~gi~~~~~~Hr----------------Al~DA~ata~l~~~l~~ 207 (308)
T 3cg7_A 170 TTNIGKMNE-YYDLPTIGRAHD----------------AMDDCLNIATILQRMIN 207 (308)
T ss_dssp CSHHHHHHH-HTTCCCCSCTTC----------------HHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHH-HcCCCCCCCCcC----------------HHHHHHHHHHHHHHHHH
Confidence 578999995 457765322 22 88999999999887753
No 30
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=81.71 E-value=32 Score=37.48 Aligned_cols=162 Identities=17% Similarity=0.146 Sum_probs=86.9
Q ss_pred CCeEEEEEEEeC-C---CCCCCCCCceeEEEEeccCCCCCCCCCCCCCCCEEEEEeCCCC---------------C-chh
Q 016210 32 SSLVGLDAEWKP-Q---RSHQSNFPRVSLLQLACQPGPRFNPESDESNASVVFLLDLSSI---------------P-LPS 91 (393)
Q Consensus 32 ~~~Va~D~E~~~-~---~~~~~~~~~v~LlQIa~~~~~~~~~~~~~~~~~~v~LID~~~l---------------~-~~~ 91 (393)
-.+++||.|..+ . ++. .....-.++||+... ..+...++++..... . ..+
T Consensus 190 l~ilsfDIEt~s~~~g~fP~-~~~~~d~Ii~Is~~~---------~~g~~~~~~~~~~~~~~~~~~i~~~~v~~~~~E~~ 259 (847)
T 1s5j_A 190 IKRVAIDIEVYTPVKGRIPD-SQKAEFPIISIALAG---------SDGLKKVLVLNRNDVNEGSVKLDGISVERFNTEYE 259 (847)
T ss_dssp CCEEEEEEEECCSSSSCCCC-TTTCCSCEEEEEEEE---------TTSCEEEEEECSSCCCCCCEEETTEEEEEESSHHH
T ss_pred ceEEEEEEEeCcCCCCCCCC-ccccCCcEEEEEEEc---------cCCCcEEEEEeCCcccccccCCCCCeEEEeCCHHH
Confidence 367999999933 2 221 001123588887741 001235666643211 1 135
Q ss_pred hHHHHHHhhCCCCcEEEEEehH-hHHHHHHhhcccCCCcC---CcCC---------CCceeeHHHHHHH-Hhc-cccCCC
Q 016210 92 IWELLKELFVSPDILKLGFKFK-QDLIYLSSTFCSQGCDI---GFDR---------VEPYLDITSIYNH-LHH-KQLGRK 156 (393)
Q Consensus 92 ~~~~L~~lLe~~~i~KVgh~~k-~Dl~~L~~~~gi~g~~~---~~~~---------~~~~fDlt~LA~y-Ll~-~~~~~~ 156 (393)
++..+..++.+.+ ..||||.. +|+.+|......+|+.. .|.. -...+|+-.+... .+. ..+...
T Consensus 260 LL~~f~~~i~~~d-iivgyN~~~FDlPyL~~Ra~~lgi~~~~~p~~~~gr~~~~i~gr~~~Dl~~~~~~~~~~~y~f~~k 338 (847)
T 1s5j_A 260 LLGRFFDILLEYP-IVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVRNYAFEGK 338 (847)
T ss_dssp HHHHHHHHHTTCS-EEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSHHHHHHTSTTC
T ss_pred HHHHHHHHhccCC-EEEEeCCCCchHHHHHHHHHHcCCCcccCCeeecCCCceEeccEEEeehHHHHhhhhhhhhccccc
Confidence 7788888888876 56999975 79999853211122210 0110 1235784322211 000 000000
Q ss_pred CCCCcccHHHHHHHHcCCcccccccccCCCCCCCC-HHHHHHHHHHHHHHHHHHH
Q 016210 157 LPKETKSLANICKELLDISLSKELQCSDWSNRPLT-EEQKNYAAIDAHCLIEIFN 210 (393)
Q Consensus 157 ~~~~~~sLa~Lve~~Lg~~L~K~~q~sdWs~RPLs-~~Ql~YAA~DA~~Ll~L~~ 210 (393)
..+++|.++++.+||..-.. . ...|. ... ..-++|.-.||..++.|+.
T Consensus 339 --l~sysL~~Va~~~Lg~~K~d-v-~~~i~--~~~~~~l~~Ycl~Da~lt~~L~~ 387 (847)
T 1s5j_A 339 --YNEYNLDAVAKALLGTSKVK-V-DTLIS--FLDVEKLIEYNFRDAEITLQLTT 387 (847)
T ss_dssp --CSSCSHHHHHHHHHCCCCC----SSCTT--TCCHHHHHHHHHHHHHHHHHTTT
T ss_pred --cccccHHHHHHHHhCCCCcc-h-hHhhh--hccHHHHHHHHHHHHHHHHHHHH
Confidence 13789999999999965321 1 12232 223 5568999999999999853
No 31
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=79.43 E-value=16 Score=40.29 Aligned_cols=113 Identities=15% Similarity=0.205 Sum_probs=64.2
Q ss_pred hhHHHHHHhhC--CCCcEEEEEehH-hHHHHHHhh---cccCCC-cCCc--------------------------CCCC-
Q 016210 91 SIWELLKELFV--SPDILKLGFKFK-QDLIYLSST---FCSQGC-DIGF--------------------------DRVE- 136 (393)
Q Consensus 91 ~~~~~L~~lLe--~~~i~KVgh~~k-~Dl~~L~~~---~gi~g~-~~~~--------------------------~~~~- 136 (393)
+++..+..++. +|+++ +|||.. +|+.+|.+. +|+... ..|. ...+
T Consensus 315 eLL~~F~~~i~~~DPDII-vGyNi~~FDlpyL~~Ra~~lgi~~~~~lGR~~~~~~~~~~~~~~~~~~g~~~~~~~~i~GR 393 (919)
T 3iay_A 315 EMLSNWRNFIIKVDPDVI-IGYNTTNFDIPYLLNRAKALKVNDFPYFGRLKTVKQEIKESVFSSKAYGTRETKNVNIDGR 393 (919)
T ss_dssp HHHHHHHHHHHHHCCSEE-EESSTTTTHHHHHHHHHHHTTCTTCSCCSSBTTCCCCBCCEEEEETTTEEEEECCBCCTTC
T ss_pred HHHHHHHHHHHHhCCCEE-EecCCccCCHHHHHHHHHHcCCCchhhhccccCccccccccccccccccccccceeEEcCe
Confidence 45556655553 58874 799985 799987422 333100 0000 0011
Q ss_pred ceeeHHHHHHHHhccccCCCCCCCcccHHHHHHHHcCCcccc--cccccC-CCCCCCC-HHHHHHHHHHHHHHHHHHHHH
Q 016210 137 PYLDITSIYNHLHHKQLGRKLPKETKSLANICKELLDISLSK--ELQCSD-WSNRPLT-EEQKNYAAIDAHCLIEIFNIF 212 (393)
Q Consensus 137 ~~fDlt~LA~yLl~~~~~~~~~~~~~sLa~Lve~~Lg~~L~K--~~q~sd-Ws~RPLs-~~Ql~YAA~DA~~Ll~L~~~L 212 (393)
..+|+-.++...+. ..+++|.++++++||..... ..+..+ |...+-. ..-+.|.-.||...++|+..+
T Consensus 394 ~~lDl~~~~k~~~~--------l~sysL~~Va~~~Lg~~K~dv~~~~I~~l~~~~~~~~~~L~~Y~~~Da~l~~~L~~kl 465 (919)
T 3iay_A 394 LQLDLLQFIQREYK--------LRSYTLNAVSAHFLGEQKEDVHYSIISDLQNGDSETRRRLAVYCLKDAYLPLRLMEKL 465 (919)
T ss_dssp EEEEHHHHHHHHCC--------CSCCCHHHHHHHHHCCC------CCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEhHHHHHhhcC--------CCCCCHHHHHHHhcccCCCCCCHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 36785444444322 24899999999999964321 112222 2211111 234799999999999998876
No 32
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans}
Probab=77.60 E-value=0.33 Score=37.03 Aligned_cols=42 Identities=17% Similarity=0.094 Sum_probs=33.0
Q ss_pred HHHHHHhh------hhcCCCCc-ccccccc---ccCCCCCHHHHHHHHhhcc
Q 016210 261 DIIRATSY------YSQCLPEG-VVSRVSY---LNTMPMDESLVKIVRKYGE 302 (393)
Q Consensus 261 ~~~~~~~~------~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~ 302 (393)
+++++||. +++++||. |++|.++ |...|.+...|..++.+|+
T Consensus 6 ~l~~~L~~wR~~~A~~~~vpp~~I~~d~~L~~iA~~~P~t~~eL~~i~Gvg~ 57 (77)
T 2rhf_A 6 DLSEALRELRRELMKETGYSAFVVFTNATLEALAARQPRTLAELAEVPGLGE 57 (77)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHCCCSHHHHTTSTTTCH
T ss_pred HHHHHHHHHHHHHHHHcCCCcceeeCHHHHHHHHHhCCCCHHHHhhCCCCCH
Confidence 44555543 67799999 8999888 9999999999987776654
No 33
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=75.68 E-value=4.2 Score=35.90 Aligned_cols=33 Identities=12% Similarity=-0.093 Sum_probs=23.2
Q ss_pred hhHHHHHHhhCCCC----cEEEEEehHhHHHHHHhhc
Q 016210 91 SIWELLKELFVSPD----ILKLGFKFKQDLIYLSSTF 123 (393)
Q Consensus 91 ~~~~~L~~lLe~~~----i~KVgh~~k~Dl~~L~~~~ 123 (393)
+++..|.+++.+.- ...||||+.+|+..|.+.+
T Consensus 87 ev~~~~~~~l~~~~~~~~~~lvghn~~FD~~fL~~~~ 123 (194)
T 2gbz_A 87 QAEAQTVAFLGEWIRAGASPMCGNSICQDRRFLHRQM 123 (194)
T ss_dssp HHHHHHHHHHTTTCCTTSSCEEESSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCCCceEEecCHHHhHHHHHHHH
Confidence 34556666776532 2359999999999998753
No 34
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=68.75 E-value=29 Score=37.64 Aligned_cols=51 Identities=18% Similarity=0.214 Sum_probs=34.7
Q ss_pred CcccHHHHHHHHcCCcccc------cccccC-CCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 016210 160 ETKSLANICKELLDISLSK------ELQCSD-WSNRPLTEEQKNYAAIDAHCLIEIFNIF 212 (393)
Q Consensus 160 ~~~sLa~Lve~~Lg~~L~K------~~q~sd-Ws~RPLs~~Ql~YAA~DA~~Ll~L~~~L 212 (393)
.+++|.++++.+||..... ..+... |... ...-+.|.-.||...+.|+..+
T Consensus 292 ~SysL~~Va~~~Lg~~K~~~~~~~~~~eI~~~~~~~--~~~L~~Y~l~Da~L~~~L~~kl 349 (786)
T 3k59_A 292 SSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAED--KPALATYNLKNCELVTQIFHKT 349 (786)
T ss_dssp SCCSHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhCCCCcccCccccHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHh
Confidence 4899999999999965221 011222 2211 1456899999999999998874
No 35
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=68.05 E-value=83 Score=29.76 Aligned_cols=86 Identities=14% Similarity=0.165 Sum_probs=53.8
Q ss_pred CCCCcEEEEEehHhHHHHHHhhcccCCCcCCcCCC--------------CceeeHHHHHHHHhccccCCCCCCCcccHHH
Q 016210 101 VSPDILKLGFKFKQDLIYLSSTFCSQGCDIGFDRV--------------EPYLDITSIYNHLHHKQLGRKLPKETKSLAN 166 (393)
Q Consensus 101 e~~~i~KVgh~~k~Dl~~L~~~~gi~g~~~~~~~~--------------~~~fDlt~LA~yLl~~~~~~~~~~~~~sLa~ 166 (393)
-++++..|.|..-.|+..|.+.+- |.. .+ ..++|+-.++.... ...-||.+
T Consensus 147 l~~~v~WvtfH~~yDf~yL~k~lt--~~~----LP~~~~eF~~~l~~~FP~vYD~K~l~~~~~---------~l~ggL~~ 211 (285)
T 4gmj_B 147 LCEGVKWLSFHSGYDFGYLIKILT--NSN----LPEEELDFFEILRLFFPVIYDVKYLMKSCK---------NLKGGLQE 211 (285)
T ss_dssp SCTTCEEEESSCHHHHHHHHHHHH--TSC----CCSSHHHHHHHHHHHCSCEEEHHHHGGGST---------TCCSCHHH
T ss_pred hcCCCceEEecchhhHHHHHHHHh--CCC----CCCCHHHHHHHHHHHCchhhhHHHHHHhcc---------ccCChHHH
Confidence 457788898888899987755421 100 12 24778332222111 12458999
Q ss_pred HHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016210 167 ICKELLDIS-LSKELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQ 218 (393)
Q Consensus 167 Lve~~Lg~~-L~K~~q~sdWs~RPLs~~Ql~YAA~DA~~Ll~L~~~L~~~L~~ 218 (393)
+++. |+++ +.+.+| |..|+..+...+-.|.+.+-+
T Consensus 212 lA~~-L~v~r~g~~Hq----------------AGsDSllT~~~F~kl~~~~f~ 247 (285)
T 4gmj_B 212 VAEQ-LELERIGPQHQ----------------AGSDSLLTGMAFFKMREMFFE 247 (285)
T ss_dssp HHHH-TTCCCCSCTTS----------------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHh-CCCCCCCCCCc----------------chhHHHHHHHHHHHHHHHHhc
Confidence 9876 4553 222232 889999999999999888764
No 36
>2rrd_A BLM HRDC domain, HRDC domain from bloom syndrome protein; DNA helicase, RECQ family, HRDC DOMA binding protein; NMR {Homo sapiens}
Probab=67.43 E-value=1.7 Score=34.99 Aligned_cols=46 Identities=4% Similarity=-0.049 Sum_probs=34.5
Q ss_pred chhhHHHHHHHH--hh----hhcCCCCc-ccccccc---ccCCCCCHHHHHHHHhh
Q 016210 255 KLCEALDIIRAT--SY----YSQCLPEG-VVSRVSY---LNTMPMDESLVKIVRKY 300 (393)
Q Consensus 255 ~~~~~~~~~~~~--~~----~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~ 300 (393)
|.....+++++| |. +.+++||. |++|..+ |...|.+...|..|++.
T Consensus 17 ~~e~~~~l~~~L~~wR~~~A~~~~vP~~~If~D~tL~eiA~~~P~t~~eL~~I~Gv 72 (101)
T 2rrd_A 17 REEMVKKCLGELTEVCKSLGKVFGVHYFNIFNTVTLKKLAESLSSDPEVLLQIDGV 72 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHCCHHHHHHHHHHCCCCHHHHHTSTTC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHcCCCCCeeECHHHHHHHHHhCCCCHHHHhhCCCC
Confidence 344466666666 43 77799999 8998887 99999999998865443
No 37
>2kv2_A Bloom syndrome protein; HRDC domain, disease mutation, DNA replicati binding, nucleotide-binding, nucleus, gene regulation; NMR {Homo sapiens}
Probab=58.57 E-value=1.5 Score=34.00 Aligned_cols=44 Identities=7% Similarity=-0.022 Sum_probs=33.5
Q ss_pred hHHHHHHHHhhhhcCCCCc-ccccccc---ccCCCCCHHHHHHHHhhc
Q 016210 258 EALDIIRATSYYSQCLPEG-VVSRVSY---LNTMPMDESLVKIVRKYG 301 (393)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~ 301 (393)
++|..+|.-.-+.+++||. |+++..+ |...|.+...|..|++.|
T Consensus 11 ~~L~~wR~~~A~~~~vp~~~If~d~tL~~iA~~~P~t~~eL~~i~Gvg 58 (85)
T 2kv2_A 11 GELTEVCKSLGKVFGVHYFNIFNTVTLKKLAESLSSDPEVLLQIDGVT 58 (85)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHCCHHHHHHHHHHCCSCHHHHHTSSSCC
T ss_pred HHHHHHHHHHHHHcCCCcceeECHHHHHHHHHhCCCCHHHHhhCCCCC
Confidence 4455555555578899999 8998887 999999999998666544
No 38
>2dgz_A Werner syndrome protein variant; HRDC domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.60.8.1
Probab=53.05 E-value=3.3 Score=34.04 Aligned_cols=43 Identities=16% Similarity=0.098 Sum_probs=33.3
Q ss_pred HHHHHHHhhhhcCCCCc-ccccccc---ccCCCCCHHHHHHHHhhcc
Q 016210 260 LDIIRATSYYSQCLPEG-VVSRVSY---LNTMPMDESLVKIVRKYGE 302 (393)
Q Consensus 260 ~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~ 302 (393)
|..+|..--+.+++||. |+.|... |...|.+...|..|++.|+
T Consensus 28 L~~wR~~~A~~~~vP~y~If~D~tL~emA~~~P~t~~eL~~I~Gvg~ 74 (113)
T 2dgz_A 28 LVEARQKHANKMDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSE 74 (113)
T ss_dssp HHHHHHHHHHHTTCCHHHHCCHHHHHHHHHHCCCSHHHHHHSSSCCT
T ss_pred HHHHHHHHHHHhCCCCCeeECHHHHHHHHHhCCCCHHHHHhCCCCCH
Confidence 33333333377899999 8888887 9999999999999888764
No 39
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A
Probab=48.43 E-value=2.5 Score=34.14 Aligned_cols=45 Identities=16% Similarity=0.084 Sum_probs=33.4
Q ss_pred hHHHHHHHHhhhhcCCCCc-ccccccc---ccCCCCCHHHHHHHHhhcc
Q 016210 258 EALDIIRATSYYSQCLPEG-VVSRVSY---LNTMPMDESLVKIVRKYGE 302 (393)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~ 302 (393)
++|..+|..--+.+++||. |+.|... |...|.+...|..|++.|+
T Consensus 19 ~~L~~wR~~~A~~~~vP~y~If~D~tL~emA~~~P~t~~eL~~I~Gvg~ 67 (103)
T 2e1f_A 19 GKLVEARQKHANKMDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSE 67 (103)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHCCHHHHHHHHHHCCCSHHHHTTSTTCCH
T ss_pred HHHHHHHHHHHHHcCCCCCeeECHHHHHHHHHhCCCCHHHHhcCCCCCH
Confidence 3444444444477899999 8888887 9999999998887776654
No 40
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=28.40 E-value=64 Score=36.30 Aligned_cols=108 Identities=19% Similarity=0.209 Sum_probs=66.3
Q ss_pred cEEEEEehHhHHHHHHhhcccCCCcCCcCCCCceeeHHHHHHHHh-ccc------c-----CCC----------------
Q 016210 105 ILKLGFKFKQDLIYLSSTFCSQGCDIGFDRVEPYLDITSIYNHLH-HKQ------L-----GRK---------------- 156 (393)
Q Consensus 105 i~KVgh~~k~Dl~~L~~~~gi~g~~~~~~~~~~~fDlt~LA~yLl-~~~------~-----~~~---------------- 156 (393)
-+.||||+.+|-..+.+.|.+.+. -..++| ||-.+--. |-. + ++.
T Consensus 195 rlIVGHNVsyDRARI~EeY~l~~s------k~rFlD-TMSLHvavsG~~s~QR~~w~~~kk~k~~~~~e~~~~~~~~~~~ 267 (1172)
T 3ikm_A 195 QLVVGHNVSFDRAHIREQYLIQGS------RMRFLD-TMSMHMAISGLSSFQRSLWIAAKQGKHKVQPPTKQGQKSQRKA 267 (1172)
T ss_dssp CCCBCBCSSSSTTGGGTSSCSSCC------CCCCCB-TTHHHHHHSCCCHHHHHHHHHHHHC------------------
T ss_pred cEEEeCCcchhHHHHHHHHhcccC------Cceeee-chhhhhhccccchhhHHHHHHhhhhcccchhhHHHHhhhcccc
Confidence 345999999999887777877331 235789 65444321 110 0 000
Q ss_pred --CC---------C-Ccc--cHHHHHHHHcCC-ccccccccc--CCCCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016210 157 --LP---------K-ETK--SLANICKELLDI-SLSKELQCS--DWSNRPLT---EEQKNYAAIDAHCLIEIFNIFQVKV 216 (393)
Q Consensus 157 --~~---------~-~~~--sLa~Lve~~Lg~-~L~K~~q~s--dWs~RPLs---~~Ql~YAA~DA~~Ll~L~~~L~~~L 216 (393)
.| . ... ||++++.-++|. +++|+.+.. .-+...+- .+-+.|+|.||.+++++|..+.+..
T Consensus 268 ~~~p~~~~~~W~~~sS~N~~SL~dV~~lhcg~~~ldK~~Rd~Fv~~~~~dI~~~fq~Lm~YCA~DV~aTh~V~~kl~P~F 347 (1172)
T 3ikm_A 268 RRGPAISSWDWLDISSVNSNSLAEVHRLYVGGPPLEKEPRELFVKGTMKDIRENFQDLMQYCAQDVWATHEVFQQQLPLF 347 (1172)
T ss_dssp --------CCCCCCCCTTSHHHHHHHTCSSCSCS--SCSSSSTTTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCccccCCCcccccCCCcCCHHHHHHHhCCCcccChhhHhhhhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 00 0 123 799999999997 888865322 12222221 3348999999999999999999887
Q ss_pred Hhc
Q 016210 217 AQK 219 (393)
Q Consensus 217 ~~~ 219 (393)
.+.
T Consensus 348 ~er 350 (1172)
T 3ikm_A 348 LER 350 (1172)
T ss_dssp HTT
T ss_pred HHh
Confidence 654
No 41
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=23.20 E-value=1.1e+02 Score=31.14 Aligned_cols=108 Identities=19% Similarity=0.119 Sum_probs=57.2
Q ss_pred hCCCCcEEEEEehHhHHHHHHhhcccCCCcCC----cC-----CCCceeeHHHHHHHHhccccCCCCCCCcccHHHHHHH
Q 016210 100 FVSPDILKLGFKFKQDLIYLSSTFCSQGCDIG----FD-----RVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKE 170 (393)
Q Consensus 100 Le~~~i~KVgh~~k~Dl~~L~~~~gi~g~~~~----~~-----~~~~~fDlt~LA~yLl~~~~~~~~~~~~~sLa~Lve~ 170 (393)
|.+.+...||||+-.|+..|.+.|- |--|. |. .-..++| |...+...... .. ....+|..|.+.
T Consensus 272 L~~~~kpiVgHN~l~Dl~~l~~~F~--~pLP~~~~eFk~~i~~lFP~i~D-TK~la~~~~~~--~~--~~~~~L~~l~~~ 344 (507)
T 3d45_A 272 IANSGKLVVGHNMLLDVMHTIHQFY--CPLPADLNEFKEMAICVFPRLLD-TKLMASTQPFK--DI--INNTSLAELEKR 344 (507)
T ss_dssp HHHHCCEEEESSCHHHHHHHHHHHT--CSCCSSHHHHHHHHHHHCSCEEE-HHHHTTSTTHH--HH--CCCCCHHHHHHH
T ss_pred HHhCCCeEEEechHHHHHHHHHHhc--CCCCCCHHHHHHHHHHhCCceeE-hHhhhhcCccc--cc--cCCCCHHHHHHH
Confidence 3334566799999999999877652 21110 00 0024789 65332211000 00 024689999887
Q ss_pred HcCCc--cccc---ccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016210 171 LLDIS--LSKE---LQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVA 217 (393)
Q Consensus 171 ~Lg~~--L~K~---~q~sdWs~RPLs~~Ql~YAA~DA~~Ll~L~~~L~~~L~ 217 (393)
+-... .+.- .+...+. ......+-|+.||+.+-.++-.|...|.
T Consensus 345 l~~~~~~~p~i~~~~~~~~y~---~~~~~~HeAGyDA~mTg~~F~kl~~~l~ 393 (507)
T 3d45_A 345 LKETPFDPPKVESAEGFPSYD---TASEQLHEAGYDAYITGLCFISMANYLG 393 (507)
T ss_dssp TTSTTCCCCCEEECTTSCCCC-------CCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HhccCCCCCeEEecccccccc---cCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 63221 1111 1111111 1122335599999999999999988775
No 42
>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis}
Probab=20.17 E-value=4.3e+02 Score=23.24 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016210 198 AAIDAHCLIEIFNIFQV 214 (393)
Q Consensus 198 AA~DA~~Ll~L~~~L~~ 214 (393)
|-.||...+..|..+..
T Consensus 164 AL~DAR~n~~~~~~~~~ 180 (190)
T 4hec_A 164 ALVDARDQLRRFRLITS 180 (190)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHhC
Confidence 78899999988888764
Done!