Query 016211
Match_columns 393
No_of_seqs 207 out of 2026
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 04:48:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016211.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016211hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02487 zeta-carotene desatur 100.0 5.2E-44 1.1E-48 344.5 32.4 383 1-388 129-547 (569)
2 TIGR02732 zeta_caro_desat caro 100.0 3.1E-42 6.7E-47 330.4 33.0 383 1-388 53-471 (474)
3 PLN02612 phytoene desaturase 100.0 1.1E-40 2.3E-45 325.6 33.2 376 1-388 147-542 (567)
4 TIGR02731 phytoene_desat phyto 100.0 2.4E-37 5.2E-42 297.6 33.3 376 1-388 53-450 (453)
5 TIGR03467 HpnE squalene-associ 100.0 5.8E-37 1.3E-41 292.9 31.0 363 1-388 42-415 (419)
6 PRK07233 hypothetical protein; 100.0 2E-32 4.3E-37 262.8 30.2 360 1-388 52-425 (434)
7 COG1232 HemY Protoporphyrinoge 100.0 4.9E-31 1.1E-35 244.3 20.8 353 2-387 56-439 (444)
8 PRK12416 protoporphyrinogen ox 100.0 4.6E-30 1E-34 247.7 24.9 359 2-388 61-455 (463)
9 TIGR00562 proto_IX_ox protopor 100.0 1.4E-29 3E-34 244.7 25.2 354 2-388 60-454 (462)
10 PRK11883 protoporphyrinogen ox 100.0 4.9E-28 1.1E-32 233.5 24.2 359 2-388 56-446 (451)
11 PLN02576 protoporphyrinogen ox 100.0 8E-28 1.7E-32 234.3 24.7 356 2-388 67-481 (496)
12 PRK07208 hypothetical protein; 100.0 1.7E-27 3.6E-32 231.0 26.6 357 2-388 58-455 (479)
13 COG3349 Uncharacterized conser 100.0 1.7E-28 3.6E-33 226.3 16.8 382 1-388 54-457 (485)
14 TIGR02733 desat_CrtD C-3',4' d 99.9 1.9E-21 4E-26 189.2 24.3 286 93-388 167-486 (492)
15 PLN02268 probable polyamine ox 99.9 1.2E-21 2.6E-26 187.8 20.8 268 92-388 130-428 (435)
16 PLN02529 lysine-specific histo 99.8 1.9E-19 4.1E-24 177.9 21.5 276 92-388 285-592 (738)
17 TIGR02734 crtI_fam phytoene de 99.8 5.9E-19 1.3E-23 172.2 23.4 282 93-388 159-486 (502)
18 PLN02676 polyamine oxidase 99.8 2.1E-19 4.6E-24 172.9 16.6 282 92-388 155-467 (487)
19 PLN02568 polyamine oxidase 99.8 5.5E-19 1.2E-23 171.2 17.8 282 95-388 160-529 (539)
20 TIGR02730 carot_isom carotene 99.8 9.6E-18 2.1E-22 163.0 25.8 283 94-388 168-486 (493)
21 PLN03000 amine oxidase 99.8 1E-18 2.2E-23 173.4 18.7 218 153-388 373-617 (881)
22 KOG1276 Protoporphyrinogen oxi 99.8 1.2E-18 2.5E-23 155.7 15.9 285 92-388 152-487 (491)
23 PLN02328 lysine-specific histo 99.8 3.7E-18 7.9E-23 169.5 20.3 219 152-388 428-673 (808)
24 PF01593 Amino_oxidase: Flavin 99.8 1.3E-19 2.8E-24 174.0 9.8 286 91-388 138-447 (450)
25 PLN02976 amine oxidase 99.8 2.7E-18 5.8E-23 175.1 14.7 244 125-388 904-1180(1713)
26 KOG4254 Phytoene desaturase [C 99.8 1.6E-16 3.4E-21 142.9 23.4 265 113-387 219-539 (561)
27 COG1231 Monoamine oxidase [Ami 99.7 1.1E-17 2.4E-22 152.1 12.7 220 156-388 204-441 (450)
28 COG2907 Predicted NAD/FAD-bind 99.7 3.2E-16 6.9E-21 136.5 17.6 228 1-251 64-301 (447)
29 COG1233 Phytoene dehydrogenase 99.6 2.1E-14 4.5E-19 138.7 18.5 268 94-379 165-464 (487)
30 KOG0029 Amine oxidase [Seconda 99.6 3.1E-14 6.8E-19 135.9 15.6 219 154-388 212-453 (501)
31 COG3380 Predicted NAD/FAD-depe 99.5 4.9E-15 1.1E-19 125.1 4.5 212 158-388 105-325 (331)
32 PTZ00363 rab-GDP dissociation 99.5 5.2E-13 1.1E-17 126.3 17.8 195 9-217 84-287 (443)
33 KOG0685 Flavin-containing amin 99.5 1.8E-13 3.8E-18 124.9 12.1 228 153-388 215-485 (498)
34 PF00996 GDI: GDP dissociation 99.1 4.2E-09 9E-14 98.7 16.6 195 5-214 81-283 (438)
35 PRK13977 myosin-cross-reactive 98.9 5E-08 1.1E-12 93.9 15.6 125 91-221 158-294 (576)
36 KOG1439 RAB proteins geranylge 98.6 3.6E-07 7.9E-12 82.2 10.1 197 4-214 80-283 (440)
37 TIGR02352 thiamin_ThiO glycine 98.0 0.00035 7.6E-09 64.7 16.3 57 164-222 139-195 (337)
38 COG5044 MRS6 RAB proteins gera 98.0 9.2E-05 2E-09 66.4 10.8 193 4-215 81-279 (434)
39 PRK00711 D-amino acid dehydrog 97.9 0.00097 2.1E-08 63.7 18.3 55 164-220 203-257 (416)
40 PF07156 Prenylcys_lyase: Pren 97.8 7.9E-05 1.7E-09 69.0 8.3 117 93-221 67-188 (368)
41 TIGR01373 soxB sarcosine oxida 97.5 0.013 2.8E-07 55.8 18.5 56 164-220 185-240 (407)
42 PF01266 DAO: FAD dependent ox 97.4 0.00048 1E-08 64.1 8.2 97 126-228 111-210 (358)
43 KOG4405 GDP dissociation inhib 97.4 0.0022 4.8E-08 58.5 11.0 158 52-214 177-339 (547)
44 TIGR00031 UDP-GALP_mutase UDP- 97.2 0.00051 1.1E-08 64.0 5.7 117 96-223 129-250 (377)
45 PF03486 HI0933_like: HI0933-l 97.1 0.0023 5E-08 60.5 8.6 65 153-219 100-165 (409)
46 COG2081 Predicted flavoprotein 97.0 0.0031 6.7E-08 57.8 7.9 61 153-217 102-164 (408)
47 PF06100 Strep_67kDa_ant: Stre 96.9 0.014 3.1E-07 55.3 11.6 140 64-219 121-273 (500)
48 TIGR03378 glycerol3P_GlpB glyc 96.8 0.0052 1.1E-07 57.8 8.0 65 161-227 262-329 (419)
49 COG2509 Uncharacterized FAD-de 96.7 0.0058 1.2E-07 56.9 7.7 57 164-222 175-232 (486)
50 COG0579 Predicted dehydrogenas 96.4 0.013 2.7E-07 55.3 7.7 56 164-221 155-212 (429)
51 TIGR02485 CobZ_N-term precorri 96.3 0.017 3.7E-07 55.5 8.7 64 155-219 117-182 (432)
52 PLN02464 glycerol-3-phosphate 96.2 0.32 6.9E-06 49.1 17.2 57 163-220 233-296 (627)
53 PTZ00383 malate:quinone oxidor 96.2 0.02 4.3E-07 55.7 8.0 56 164-221 213-274 (497)
54 PRK08274 tricarballylate dehyd 96.0 0.027 6E-07 54.7 8.4 60 157-219 127-191 (466)
55 TIGR03862 flavo_PP4765 unchara 96.0 0.08 1.7E-06 49.4 10.8 63 153-220 77-141 (376)
56 TIGR03329 Phn_aa_oxid putative 95.9 0.025 5.3E-07 54.9 7.3 53 164-220 185-237 (460)
57 PF00890 FAD_binding_2: FAD bi 95.8 0.032 7E-07 53.3 7.8 57 163-221 142-204 (417)
58 TIGR03197 MnmC_Cterm tRNA U-34 95.8 0.02 4.2E-07 54.1 6.0 54 164-221 137-191 (381)
59 TIGR03377 glycerol3P_GlpA glyc 95.7 0.039 8.5E-07 54.4 8.2 56 163-220 129-190 (516)
60 TIGR01377 soxA_mon sarcosine o 95.7 0.04 8.7E-07 51.9 7.9 54 164-220 147-200 (380)
61 PF13738 Pyr_redox_3: Pyridine 95.6 0.031 6.7E-07 47.4 6.2 53 164-219 84-137 (203)
62 PRK11728 hydroxyglutarate oxid 95.6 0.041 8.9E-07 52.2 7.6 54 164-220 151-204 (393)
63 PRK12845 3-ketosteroid-delta-1 95.6 0.043 9.3E-07 54.5 7.9 62 156-221 213-279 (564)
64 COG0578 GlpA Glycerol-3-phosph 95.6 0.42 9.2E-06 46.4 14.2 68 152-222 153-227 (532)
65 PRK11101 glpA sn-glycerol-3-ph 95.5 0.063 1.4E-06 53.2 8.5 92 125-220 113-211 (546)
66 PRK10157 putative oxidoreducta 95.5 0.06 1.3E-06 51.7 8.2 55 164-220 110-164 (428)
67 TIGR00275 flavoprotein, HI0933 95.4 0.073 1.6E-06 50.6 8.5 63 154-219 97-159 (400)
68 PRK12844 3-ketosteroid-delta-1 95.3 0.073 1.6E-06 52.9 8.4 58 162-221 208-270 (557)
69 PRK06134 putative FAD-binding 95.3 0.062 1.3E-06 53.7 7.9 55 164-220 219-278 (581)
70 TIGR01816 sdhA_forward succina 95.2 0.11 2.3E-06 51.8 9.2 59 160-220 117-181 (565)
71 PRK04176 ribulose-1,5-biphosph 95.1 0.083 1.8E-06 46.8 7.4 56 164-220 106-173 (257)
72 PRK12409 D-amino acid dehydrog 95.1 0.082 1.8E-06 50.4 7.9 56 164-221 199-259 (410)
73 PRK10015 oxidoreductase; Provi 95.1 0.096 2.1E-06 50.2 8.3 55 164-220 110-164 (429)
74 PRK11259 solA N-methyltryptoph 95.0 0.084 1.8E-06 49.6 7.6 59 164-226 151-209 (376)
75 TIGR01813 flavo_cyto_c flavocy 95.0 0.09 2E-06 50.7 7.9 57 164-221 132-193 (439)
76 PRK06175 L-aspartate oxidase; 95.0 0.14 3E-06 49.3 8.9 56 162-219 128-188 (433)
77 PRK05329 anaerobic glycerol-3- 94.9 0.12 2.6E-06 49.2 8.2 60 163-224 260-322 (422)
78 PRK07121 hypothetical protein; 94.9 0.099 2.1E-06 51.2 7.9 57 163-220 178-239 (492)
79 PRK12835 3-ketosteroid-delta-1 94.9 0.11 2.4E-06 51.9 8.3 56 164-220 215-275 (584)
80 PRK06481 fumarate reductase fl 94.8 0.1 2.2E-06 51.2 7.7 55 163-219 191-250 (506)
81 TIGR01320 mal_quin_oxido malat 94.7 0.12 2.7E-06 50.2 8.1 55 164-220 180-240 (483)
82 PRK09078 sdhA succinate dehydr 94.7 0.17 3.7E-06 50.8 9.0 59 161-220 148-212 (598)
83 PRK05675 sdhA succinate dehydr 94.6 0.19 4E-06 50.2 9.2 59 161-220 125-189 (570)
84 TIGR00292 thiazole biosynthesi 94.6 0.18 3.9E-06 44.6 8.1 63 164-226 102-177 (254)
85 PRK07843 3-ketosteroid-delta-1 94.6 0.13 2.8E-06 51.1 8.0 59 161-221 207-270 (557)
86 PRK08958 sdhA succinate dehydr 94.4 0.22 4.7E-06 49.9 9.2 60 160-220 141-206 (588)
87 PRK12843 putative FAD-binding 94.4 0.12 2.6E-06 51.6 7.4 57 163-221 222-283 (578)
88 KOG2820 FAD-dependent oxidored 94.4 0.18 3.9E-06 45.4 7.3 61 166-227 157-218 (399)
89 PRK05257 malate:quinone oxidor 94.3 0.16 3.5E-06 49.5 7.7 56 164-221 185-247 (494)
90 PRK06847 hypothetical protein; 94.2 0.16 3.5E-06 47.7 7.5 54 164-220 109-163 (375)
91 PF01134 GIDA: Glucose inhibit 94.2 0.2 4.3E-06 46.8 7.7 52 164-218 97-150 (392)
92 PRK08401 L-aspartate oxidase; 94.1 0.26 5.7E-06 47.9 8.9 56 162-220 120-175 (466)
93 TIGR01812 sdhA_frdA_Gneg succi 94.1 0.28 6E-06 49.0 9.2 58 161-220 128-191 (566)
94 PRK12842 putative succinate de 94.0 0.21 4.5E-06 50.0 8.1 55 164-220 216-275 (574)
95 PRK05945 sdhA succinate dehydr 94.0 0.3 6.5E-06 48.8 9.2 57 162-220 135-197 (575)
96 PRK07573 sdhA succinate dehydr 94.0 0.2 4.4E-06 50.6 8.0 53 166-220 174-232 (640)
97 PF13454 NAD_binding_9: FAD-NA 94.0 0.19 4.2E-06 40.7 6.5 42 175-218 113-155 (156)
98 PRK12839 hypothetical protein; 93.9 0.24 5.1E-06 49.4 8.1 58 163-221 215-277 (572)
99 PRK06452 sdhA succinate dehydr 93.8 0.36 7.9E-06 48.1 9.2 56 163-220 137-198 (566)
100 TIGR01811 sdhA_Bsu succinate d 93.7 0.34 7.3E-06 48.7 8.9 55 164-219 131-195 (603)
101 PRK06116 glutathione reductase 93.7 0.26 5.6E-06 47.7 7.8 54 164-219 210-264 (450)
102 PRK07057 sdhA succinate dehydr 93.6 0.4 8.6E-06 48.1 9.3 60 160-220 146-211 (591)
103 COG1252 Ndh NADH dehydrogenase 93.6 0.18 4E-06 47.3 6.4 55 160-220 207-262 (405)
104 PRK12834 putative FAD-binding 93.5 0.27 5.9E-06 48.8 7.8 55 164-220 150-227 (549)
105 PRK07512 L-aspartate oxidase; 93.3 0.26 5.7E-06 48.4 7.4 58 161-220 135-197 (513)
106 PRK07333 2-octaprenyl-6-methox 93.3 0.29 6.3E-06 46.5 7.5 54 164-220 113-167 (403)
107 PF06039 Mqo: Malate:quinone o 93.2 0.44 9.5E-06 45.1 8.0 61 159-222 179-246 (488)
108 PF00732 GMC_oxred_N: GMC oxid 93.2 0.25 5.3E-06 44.8 6.5 57 172-228 202-266 (296)
109 TIGR00551 nadB L-aspartate oxi 93.2 0.4 8.6E-06 46.9 8.3 56 163-220 129-189 (488)
110 PRK07395 L-aspartate oxidase; 93.1 0.37 8.1E-06 47.8 8.1 58 162-219 134-196 (553)
111 PRK07190 hypothetical protein; 93.1 0.42 9.1E-06 46.7 8.3 61 164-226 111-172 (487)
112 PRK08773 2-octaprenyl-3-methyl 93.0 0.35 7.6E-06 45.8 7.5 59 164-225 115-175 (392)
113 PTZ00139 Succinate dehydrogena 92.9 0.57 1.2E-05 47.2 9.1 57 162-219 166-228 (617)
114 PRK09564 coenzyme A disulfide 92.9 0.35 7.6E-06 46.6 7.5 61 164-227 193-253 (444)
115 TIGR03364 HpnW_proposed FAD de 92.9 0.27 5.9E-06 46.0 6.6 55 164-226 147-202 (365)
116 TIGR02032 GG-red-SF geranylger 92.9 0.35 7.6E-06 43.5 7.1 54 164-220 93-148 (295)
117 PF00070 Pyr_redox: Pyridine n 92.9 0.42 9.2E-06 33.6 6.0 40 160-202 38-77 (80)
118 PRK07251 pyridine nucleotide-d 92.8 0.45 9.8E-06 45.8 7.9 53 164-219 200-252 (438)
119 PRK06263 sdhA succinate dehydr 92.6 0.41 8.9E-06 47.5 7.6 58 162-220 134-197 (543)
120 PRK08626 fumarate reductase fl 92.6 0.66 1.4E-05 47.1 9.1 55 164-220 160-220 (657)
121 PRK04965 NADH:flavorubredoxin 92.6 0.47 1E-05 44.7 7.6 54 164-220 185-239 (377)
122 PRK12837 3-ketosteroid-delta-1 92.5 0.5 1.1E-05 46.5 8.0 55 164-220 175-235 (513)
123 PLN00128 Succinate dehydrogena 92.5 0.59 1.3E-05 47.2 8.6 59 161-220 186-250 (635)
124 PRK13339 malate:quinone oxidor 92.5 0.43 9.2E-06 46.5 7.3 55 164-220 186-247 (497)
125 PRK12266 glpD glycerol-3-phosp 92.5 0.48 1E-05 46.6 7.8 55 163-220 156-216 (508)
126 PRK06416 dihydrolipoamide dehy 92.5 0.52 1.1E-05 45.8 8.0 54 164-220 215-272 (462)
127 TIGR01984 UbiH 2-polyprenyl-6- 92.4 0.43 9.3E-06 44.9 7.2 59 164-225 107-168 (382)
128 COG0644 FixC Dehydrogenases (f 92.4 0.55 1.2E-05 44.6 7.9 56 164-220 97-152 (396)
129 PRK08275 putative oxidoreducta 92.3 0.54 1.2E-05 46.8 8.0 56 164-220 139-200 (554)
130 PRK08205 sdhA succinate dehydr 92.3 0.68 1.5E-05 46.4 8.7 59 162-220 140-206 (583)
131 PRK08010 pyridine nucleotide-d 92.3 0.49 1.1E-05 45.6 7.6 54 164-220 201-254 (441)
132 PRK01747 mnmC bifunctional tRN 92.2 0.31 6.8E-06 49.6 6.4 64 153-220 397-463 (662)
133 PRK05249 soluble pyridine nucl 92.2 0.51 1.1E-05 45.8 7.6 54 164-220 218-272 (461)
134 PRK14694 putative mercuric red 92.2 0.53 1.1E-05 45.8 7.6 54 164-220 220-273 (468)
135 PLN02507 glutathione reductase 92.0 0.69 1.5E-05 45.4 8.2 56 162-220 244-300 (499)
136 PRK13369 glycerol-3-phosphate 92.0 0.68 1.5E-05 45.5 8.2 55 163-220 156-215 (502)
137 PRK06834 hypothetical protein; 91.9 0.6 1.3E-05 45.6 7.7 59 164-225 102-162 (488)
138 COG0665 DadA Glycine/D-amino a 91.9 0.59 1.3E-05 44.0 7.5 57 163-222 157-214 (387)
139 PRK14727 putative mercuric red 91.8 0.6 1.3E-05 45.5 7.6 54 164-220 230-283 (479)
140 TIGR01350 lipoamide_DH dihydro 91.8 0.72 1.6E-05 44.7 8.2 54 164-220 213-269 (461)
141 PRK07845 flavoprotein disulfid 91.8 0.63 1.4E-05 45.2 7.7 54 164-220 220-274 (466)
142 TIGR01424 gluta_reduc_2 glutat 91.7 0.74 1.6E-05 44.5 8.1 53 164-219 209-262 (446)
143 PRK05714 2-octaprenyl-3-methyl 91.7 0.59 1.3E-05 44.5 7.2 60 164-226 114-175 (405)
144 PRK09754 phenylpropionate diox 91.6 0.76 1.6E-05 43.6 7.9 58 164-225 188-246 (396)
145 PRK07804 L-aspartate oxidase; 91.6 0.58 1.3E-05 46.4 7.3 57 163-220 145-210 (541)
146 KOG1336 Monodehydroascorbate/f 91.6 0.48 1E-05 44.8 6.1 62 164-226 257-319 (478)
147 TIGR01988 Ubi-OHases Ubiquinon 91.4 0.63 1.4E-05 43.8 7.1 54 164-220 108-163 (385)
148 PRK14989 nitrite reductase sub 91.4 0.74 1.6E-05 48.1 8.0 61 164-225 189-250 (847)
149 PRK09897 hypothetical protein; 91.3 0.76 1.6E-05 45.3 7.6 51 165-218 110-164 (534)
150 TIGR01421 gluta_reduc_1 glutat 91.3 1 2.2E-05 43.6 8.4 55 164-220 209-265 (450)
151 TIGR01423 trypano_reduc trypan 91.2 0.84 1.8E-05 44.6 7.9 57 162-220 231-288 (486)
152 PRK08071 L-aspartate oxidase; 91.2 0.47 1E-05 46.6 6.1 54 164-220 132-190 (510)
153 PRK06069 sdhA succinate dehydr 91.1 1.2 2.5E-05 44.7 8.9 56 163-220 138-200 (577)
154 PRK07803 sdhA succinate dehydr 91.0 0.84 1.8E-05 46.1 7.9 55 163-219 139-212 (626)
155 PRK06184 hypothetical protein; 90.9 1 2.2E-05 44.3 8.2 60 164-226 111-175 (502)
156 PRK06854 adenylylsulfate reduc 90.9 0.93 2E-05 45.7 8.0 55 164-220 134-195 (608)
157 PRK13748 putative mercuric red 90.8 0.84 1.8E-05 45.5 7.6 54 164-220 312-365 (561)
158 PRK07818 dihydrolipoamide dehy 90.5 1.2 2.5E-05 43.4 8.1 53 164-219 215-272 (466)
159 KOG1346 Programmed cell death 90.5 0.37 8.1E-06 44.6 4.2 68 157-227 384-456 (659)
160 PLN02697 lycopene epsilon cycl 90.3 1 2.2E-05 44.3 7.5 54 164-220 194-248 (529)
161 PRK06912 acoL dihydrolipoamide 90.2 1.2 2.7E-05 43.1 8.0 53 164-219 213-267 (458)
162 TIGR03385 CoA_CoA_reduc CoA-di 90.2 0.84 1.8E-05 43.8 6.8 59 164-226 181-239 (427)
163 PRK06327 dihydrolipoamide dehy 90.2 1.2 2.7E-05 43.4 8.0 54 164-220 226-284 (475)
164 PRK08163 salicylate hydroxylas 90.0 1.2 2.5E-05 42.2 7.6 55 164-221 111-167 (396)
165 TIGR01176 fum_red_Fp fumarate 89.9 1.9 4.1E-05 43.2 9.2 58 161-220 131-195 (580)
166 PRK07045 putative monooxygenas 89.8 1.4 3E-05 41.6 8.0 60 164-224 108-170 (388)
167 TIGR01292 TRX_reduct thioredox 89.8 1.2 2.6E-05 40.2 7.1 52 164-219 59-111 (300)
168 PTZ00318 NADH dehydrogenase-li 89.7 0.96 2.1E-05 43.4 6.8 51 162-218 228-278 (424)
169 KOG2844 Dimethylglycine dehydr 89.7 0.63 1.4E-05 45.9 5.3 96 122-220 146-243 (856)
170 TIGR02374 nitri_red_nirB nitri 89.6 1.1 2.4E-05 46.6 7.5 54 164-220 184-238 (785)
171 PRK09231 fumarate reductase fl 89.4 2 4.3E-05 43.1 8.9 58 161-220 132-196 (582)
172 PTZ00052 thioredoxin reductase 89.4 1.5 3.3E-05 43.0 8.0 55 164-221 224-279 (499)
173 PLN02815 L-aspartate oxidase 89.3 1.2 2.7E-05 44.5 7.3 57 164-220 157-222 (594)
174 PF04820 Trp_halogenase: Trypt 89.3 1.8 3.9E-05 41.9 8.2 55 164-220 156-211 (454)
175 TIGR01810 betA choline dehydro 89.2 0.73 1.6E-05 45.6 5.6 51 174-226 206-261 (532)
176 TIGR03140 AhpF alkyl hydropero 89.1 1.4 2.9E-05 43.6 7.4 53 164-219 269-322 (515)
177 PRK07588 hypothetical protein; 89.0 1.2 2.5E-05 42.2 6.7 57 164-224 105-163 (391)
178 PRK08020 ubiF 2-octaprenyl-3-m 88.8 1.4 3.1E-05 41.6 7.2 60 164-226 114-176 (391)
179 PRK05192 tRNA uridine 5-carbox 88.8 1.5 3.3E-05 43.7 7.4 53 164-219 102-156 (618)
180 PTZ00306 NADH-dependent fumara 88.8 1.3 2.7E-05 48.4 7.4 57 164-220 546-620 (1167)
181 PRK06370 mercuric reductase; V 88.6 1.9 4.1E-05 41.9 8.0 54 164-219 214-270 (463)
182 PRK07608 ubiquinone biosynthes 88.5 1.6 3.4E-05 41.2 7.3 58 164-225 113-173 (388)
183 TIGR02462 pyranose_ox pyranose 88.5 1.4 3E-05 43.5 6.9 54 174-227 225-286 (544)
184 TIGR00136 gidA glucose-inhibit 88.3 1.6 3.4E-05 43.5 7.1 55 164-220 98-154 (617)
185 PTZ00058 glutathione reductase 88.3 1.8 3.9E-05 43.0 7.6 55 164-219 280-335 (561)
186 PRK15317 alkyl hydroperoxide r 88.2 1.8 3.9E-05 42.7 7.6 53 164-219 268-321 (517)
187 TIGR02053 MerA mercuric reduct 88.1 2.2 4.7E-05 41.5 8.0 53 164-219 209-265 (463)
188 PRK05976 dihydrolipoamide dehy 88.0 2.3 5E-05 41.4 8.2 56 164-220 223-281 (472)
189 TIGR01438 TGR thioredoxin and 87.9 2.4 5.1E-05 41.5 8.1 53 164-219 222-278 (484)
190 PRK06185 hypothetical protein; 87.8 2.2 4.7E-05 40.6 7.7 61 164-226 110-176 (407)
191 PRK08641 sdhA succinate dehydr 87.7 2.5 5.4E-05 42.5 8.3 59 161-220 132-200 (589)
192 PRK09077 L-aspartate oxidase; 87.7 2.8 6.1E-05 41.6 8.6 61 160-220 136-207 (536)
193 PRK09126 hypothetical protein; 87.6 2.1 4.5E-05 40.5 7.5 59 164-225 112-173 (392)
194 COG0654 UbiH 2-polyprenyl-6-me 87.6 2.6 5.7E-05 39.8 8.1 61 164-226 106-169 (387)
195 COG1249 Lpd Pyruvate/2-oxoglut 87.5 2.4 5.3E-05 40.8 7.7 58 159-219 211-271 (454)
196 PF01494 FAD_binding_3: FAD bi 87.1 2.2 4.9E-05 39.3 7.3 61 164-226 113-179 (356)
197 PRK10262 thioredoxin reductase 87.0 1.8 3.8E-05 39.7 6.4 60 164-225 187-253 (321)
198 KOG0404 Thioredoxin reductase 86.9 1.2 2.7E-05 37.8 4.7 70 154-227 62-131 (322)
199 TIGR01790 carotene-cycl lycope 86.8 2.4 5.1E-05 40.0 7.3 54 164-220 87-141 (388)
200 PLN02463 lycopene beta cyclase 86.7 2.4 5.3E-05 40.9 7.4 53 164-220 116-169 (447)
201 PRK06115 dihydrolipoamide dehy 86.6 3.2 7E-05 40.3 8.3 54 164-219 217-275 (466)
202 PLN02172 flavin-containing mon 86.6 2.6 5.6E-05 40.9 7.5 54 164-220 113-173 (461)
203 COG4716 Myosin-crossreactive a 86.1 5.7 0.00012 36.7 8.7 97 91-193 159-258 (587)
204 PRK05732 2-octaprenyl-6-methox 86.0 2.7 5.9E-05 39.7 7.3 54 164-220 114-169 (395)
205 PF05834 Lycopene_cycl: Lycope 85.9 2.4 5.2E-05 39.9 6.8 54 164-221 89-143 (374)
206 PRK06617 2-octaprenyl-6-methox 85.9 2.7 5.7E-05 39.6 7.1 60 164-226 106-167 (374)
207 PRK07494 2-octaprenyl-6-methox 85.8 2.4 5.1E-05 40.0 6.8 59 164-225 113-173 (388)
208 KOG2404 Fumarate reductase, fl 85.5 1.8 3.8E-05 39.0 5.1 61 164-226 141-214 (477)
209 PRK07846 mycothione reductase; 85.3 3.2 6.8E-05 40.2 7.4 57 164-224 209-266 (451)
210 KOG1335 Dihydrolipoamide dehyd 85.3 4 8.8E-05 37.8 7.4 62 158-221 248-315 (506)
211 PRK08850 2-octaprenyl-6-methox 85.1 2.9 6.3E-05 39.8 7.0 60 164-226 113-175 (405)
212 PLN02661 Putative thiazole syn 84.9 4.1 9E-05 37.7 7.5 54 164-219 174-243 (357)
213 PRK04965 NADH:flavorubredoxin 84.9 2.5 5.3E-05 39.8 6.4 45 170-219 66-110 (377)
214 TIGR01316 gltA glutamate synth 84.9 3 6.6E-05 40.3 7.1 51 168-219 315-386 (449)
215 PRK08013 oxidoreductase; Provi 84.8 3 6.6E-05 39.6 7.0 60 164-226 113-175 (400)
216 COG0562 Glf UDP-galactopyranos 84.5 1.6 3.6E-05 39.2 4.5 114 94-224 130-245 (374)
217 PLN02546 glutathione reductase 84.5 4.6 0.0001 40.2 8.3 59 160-220 291-350 (558)
218 TIGR02061 aprA adenosine phosp 84.4 4.7 0.0001 40.6 8.3 57 164-220 128-191 (614)
219 TIGR03169 Nterm_to_SelD pyridi 84.3 2.4 5.2E-05 39.6 6.0 50 164-220 193-243 (364)
220 PRK08244 hypothetical protein; 84.3 4.6 0.0001 39.6 8.2 59 164-225 102-165 (493)
221 PF12831 FAD_oxidored: FAD dep 84.0 0.32 7E-06 46.7 0.0 57 169-227 97-157 (428)
222 PRK08849 2-octaprenyl-3-methyl 83.4 3.8 8.2E-05 38.7 7.0 59 164-225 112-173 (384)
223 PRK11749 dihydropyrimidine deh 83.4 3.7 8.1E-05 39.8 7.1 51 168-220 317-387 (457)
224 PRK13512 coenzyme A disulfide 82.8 3.2 6.9E-05 40.0 6.3 56 164-226 191-247 (438)
225 PRK12810 gltD glutamate syntha 82.8 3 6.6E-05 40.6 6.2 49 169-219 336-399 (471)
226 TIGR03452 mycothione_red mycot 82.6 5.1 0.00011 38.8 7.6 53 164-220 212-265 (452)
227 TIGR02374 nitri_red_nirB nitri 82.5 2.8 6.1E-05 43.7 6.1 47 169-219 61-107 (785)
228 PRK09754 phenylpropionate diox 82.4 3.1 6.6E-05 39.5 5.9 45 172-220 68-112 (396)
229 TIGR03219 salicylate_mono sali 82.4 3.8 8.2E-05 39.1 6.6 57 164-225 107-165 (414)
230 COG1635 THI4 Ribulose 1,5-bisp 82.2 5.7 0.00012 33.9 6.6 56 164-220 111-178 (262)
231 PRK02106 choline dehydrogenase 81.7 2.4 5.3E-05 42.3 5.2 51 174-226 213-268 (560)
232 PRK07364 2-octaprenyl-6-methox 81.4 5.1 0.00011 38.1 7.1 59 164-225 123-187 (415)
233 PF01946 Thi4: Thi4 family; PD 81.2 5.8 0.00013 33.9 6.4 56 164-220 98-165 (230)
234 PRK06183 mhpA 3-(3-hydroxyphen 81.1 7.3 0.00016 38.7 8.3 60 164-226 115-181 (538)
235 PRK12831 putative oxidoreducta 81.0 5 0.00011 39.0 6.9 49 171-220 327-396 (464)
236 PRK06996 hypothetical protein; 80.9 5.5 0.00012 37.8 7.1 59 164-225 117-181 (398)
237 PRK08243 4-hydroxybenzoate 3-m 80.8 6.2 0.00013 37.3 7.4 60 164-226 105-170 (392)
238 PRK06126 hypothetical protein; 80.3 7.1 0.00015 38.8 7.9 60 164-225 128-194 (545)
239 TIGR01318 gltD_gamma_fam gluta 80.3 6.6 0.00014 38.2 7.5 50 169-219 327-397 (467)
240 COG0446 HcaD Uncharacterized N 80.1 5.3 0.00012 37.7 6.8 55 164-220 180-237 (415)
241 PRK07236 hypothetical protein; 80.0 4.8 0.0001 38.0 6.3 42 176-220 112-154 (386)
242 TIGR03140 AhpF alkyl hydropero 79.8 5.7 0.00012 39.2 7.0 56 168-225 393-455 (515)
243 KOG0405 Pyridine nucleotide-di 79.6 5.8 0.00013 36.3 6.1 61 158-219 226-286 (478)
244 COG0492 TrxB Thioredoxin reduc 78.7 7 0.00015 35.5 6.7 59 159-221 58-116 (305)
245 PRK09564 coenzyme A disulfide 78.2 6.3 0.00014 38.0 6.7 48 169-219 63-114 (444)
246 PRK12769 putative oxidoreducta 77.6 7.8 0.00017 39.5 7.4 50 168-218 512-582 (654)
247 PRK06753 hypothetical protein; 77.3 7.2 0.00016 36.5 6.7 48 176-226 110-159 (373)
248 PRK06475 salicylate hydroxylas 75.6 11 0.00025 35.6 7.6 60 164-226 109-174 (400)
249 TIGR01292 TRX_reduct thioredox 75.5 9.9 0.00022 34.1 6.9 52 166-220 180-238 (300)
250 COG3075 GlpB Anaerobic glycero 75.3 7.3 0.00016 35.4 5.5 63 163-227 259-324 (421)
251 PF07992 Pyr_redox_2: Pyridine 75.1 5.3 0.00011 33.4 4.7 50 167-218 63-120 (201)
252 TIGR03385 CoA_CoA_reduc CoA-di 75.1 7.9 0.00017 37.1 6.4 45 172-219 54-102 (427)
253 PF13434 K_oxygenase: L-lysine 74.8 6.6 0.00014 36.4 5.5 39 177-217 294-338 (341)
254 TIGR01989 COQ6 Ubiquinone bios 74.5 12 0.00026 36.1 7.4 62 164-226 119-190 (437)
255 TIGR03169 Nterm_to_SelD pyridi 74.2 4.9 0.00011 37.5 4.6 48 167-220 59-107 (364)
256 PF00743 FMO-like: Flavin-bind 74.0 14 0.0003 36.6 7.8 43 178-221 102-151 (531)
257 PRK05868 hypothetical protein; 73.9 10 0.00023 35.5 6.7 49 175-226 117-167 (372)
258 PRK08132 FAD-dependent oxidore 73.4 13 0.00029 36.9 7.7 60 164-226 127-192 (547)
259 PRK11445 putative oxidoreducta 73.3 13 0.00028 34.5 7.2 50 173-225 109-163 (351)
260 PF13434 K_oxygenase: L-lysine 73.1 7.5 0.00016 36.0 5.4 44 176-219 109-158 (341)
261 PRK06467 dihydrolipoamide dehy 72.5 15 0.00033 35.7 7.7 53 164-220 217-274 (471)
262 PRK14989 nitrite reductase sub 72.2 7.9 0.00017 40.7 5.9 45 170-219 67-112 (847)
263 COG2072 TrkA Predicted flavopr 70.8 16 0.00035 35.2 7.3 56 164-220 84-144 (443)
264 COG0445 GidA Flavin-dependent 70.7 6.2 0.00013 38.4 4.3 57 166-224 104-162 (621)
265 PRK12809 putative oxidoreducta 70.4 13 0.00028 37.8 6.9 47 172-219 499-566 (639)
266 COG0029 NadB Aspartate oxidase 70.2 16 0.00034 35.3 6.7 64 154-218 125-194 (518)
267 COG1251 NirB NAD(P)H-nitrite r 70.0 5.2 0.00011 40.3 3.7 52 166-220 191-243 (793)
268 PRK12778 putative bifunctional 69.4 14 0.0003 38.5 7.0 49 170-219 616-685 (752)
269 TIGR01372 soxA sarcosine oxida 69.2 18 0.00038 39.0 7.8 59 165-226 354-417 (985)
270 PRK06292 dihydrolipoamide dehy 68.7 17 0.00036 35.3 7.0 53 164-219 212-267 (460)
271 PRK13984 putative oxidoreducta 68.5 15 0.00032 37.2 6.8 46 173-220 473-538 (604)
272 PRK13800 putative oxidoreducta 68.2 18 0.0004 38.4 7.6 55 164-220 141-205 (897)
273 PRK13512 coenzyme A disulfide 67.2 14 0.00031 35.6 6.2 45 173-220 69-117 (438)
274 TIGR03143 AhpF_homolog putativ 67.1 19 0.00041 36.0 7.1 52 164-219 62-113 (555)
275 PRK12770 putative glutamate sy 66.9 18 0.0004 33.6 6.7 51 167-220 215-286 (352)
276 TIGR02023 BchP-ChlP geranylger 66.6 22 0.00049 33.5 7.3 58 164-225 94-161 (388)
277 PRK07538 hypothetical protein; 66.3 23 0.00049 33.8 7.3 61 164-225 104-171 (413)
278 PRK15317 alkyl hydroperoxide r 65.9 16 0.00035 36.0 6.4 52 167-220 391-449 (517)
279 PTZ00153 lipoamide dehydrogena 65.7 29 0.00064 35.4 8.2 56 164-220 355-427 (659)
280 PRK10262 thioredoxin reductase 65.4 25 0.00054 32.1 7.2 53 164-220 65-117 (321)
281 TIGR01424 gluta_reduc_2 glutat 63.7 19 0.0004 34.8 6.3 49 166-220 94-142 (446)
282 COG1251 NirB NAD(P)H-nitrite r 63.4 12 0.00026 37.8 4.8 48 169-221 66-114 (793)
283 KOG1336 Monodehydroascorbate/f 62.7 15 0.00033 35.1 5.1 46 169-218 134-179 (478)
284 TIGR02360 pbenz_hydroxyl 4-hyd 62.1 27 0.00059 33.0 6.9 61 164-227 105-171 (390)
285 PRK12775 putative trifunctiona 61.5 24 0.00051 38.1 7.0 49 170-219 617-685 (1006)
286 PLN02927 antheraxanthin epoxid 60.0 22 0.00047 36.2 6.0 43 175-220 204-248 (668)
287 COG2303 BetA Choline dehydroge 58.9 19 0.00041 35.8 5.5 55 169-225 209-271 (542)
288 COG1635 THI4 Ribulose 1,5-bisp 56.2 4.3 9.3E-05 34.6 0.4 27 362-388 216-253 (262)
289 PRK08294 phenol 2-monooxygenas 55.7 58 0.0013 33.1 8.4 62 164-226 143-217 (634)
290 PRK12771 putative glutamate sy 54.7 43 0.00093 33.5 7.2 52 172-225 315-385 (564)
291 PLN02785 Protein HOTHEAD 54.0 32 0.00069 34.6 6.1 53 173-225 231-295 (587)
292 TIGR02028 ChlP geranylgeranyl 53.8 50 0.0011 31.3 7.3 61 164-225 95-166 (398)
293 TIGR01421 gluta_reduc_1 glutat 52.1 36 0.00079 32.9 6.1 46 166-219 95-140 (450)
294 PRK04176 ribulose-1,5-biphosph 51.9 5 0.00011 35.5 0.1 26 363-388 212-248 (257)
295 TIGR01789 lycopene_cycl lycope 51.8 29 0.00063 32.6 5.2 38 176-219 100-137 (370)
296 COG3486 IucD Lysine/ornithine 51.8 26 0.00055 33.0 4.6 48 177-226 293-347 (436)
297 PRK12779 putative bifunctional 51.4 49 0.0011 35.4 7.3 48 172-219 494-561 (944)
298 TIGR00292 thiazole biosynthesi 51.3 4.9 0.00011 35.5 -0.0 26 363-388 211-247 (254)
299 PRK06116 glutathione reductase 49.5 35 0.00076 32.9 5.5 45 167-219 98-142 (450)
300 COG3573 Predicted oxidoreducta 47.8 65 0.0014 29.6 6.3 52 164-217 151-225 (552)
301 PLN00093 geranylgeranyl diphos 45.3 85 0.0018 30.4 7.4 60 164-225 134-205 (450)
302 KOG2415 Electron transfer flav 44.2 34 0.00074 32.4 4.2 63 164-227 185-265 (621)
303 PTZ00318 NADH dehydrogenase-li 42.8 58 0.0013 31.2 5.8 50 167-220 67-125 (424)
304 PLN02985 squalene monooxygenas 42.4 1.1E+02 0.0023 30.3 7.7 60 164-226 149-215 (514)
305 PLN02661 Putative thiazole syn 41.9 9.7 0.00021 35.3 0.3 26 363-388 285-321 (357)
306 KOG0042 Glycerol-3-phosphate d 41.5 38 0.00081 33.2 4.1 68 152-220 213-287 (680)
307 PRK07845 flavoprotein disulfid 40.5 77 0.0017 30.8 6.4 50 167-220 97-151 (466)
308 PRK06444 prephenate dehydrogen 39.8 65 0.0014 27.2 5.0 20 208-227 31-50 (197)
309 PLN02546 glutathione reductase 39.0 75 0.0016 31.8 6.1 47 166-220 182-228 (558)
310 TIGR01317 GOGAT_sm_gam glutama 39.0 81 0.0018 30.9 6.3 43 175-218 349-412 (485)
311 PRK06370 mercuric reductase; V 37.2 72 0.0016 30.9 5.6 45 168-220 100-145 (463)
312 KOG2852 Possible oxidoreductas 35.6 83 0.0018 28.3 5.0 61 163-227 148-214 (380)
313 COG3634 AhpF Alkyl hydroperoxi 34.4 69 0.0015 29.7 4.4 57 164-220 268-325 (520)
314 PF03275 GLF: UDP-galactopyran 33.5 5.5 0.00012 33.6 -2.4 93 115-223 2-96 (204)
315 COG0445 GidA Flavin-dependent 32.3 50 0.0011 32.5 3.4 52 318-375 317-370 (621)
316 PRK12814 putative NADPH-depend 32.3 1.1E+02 0.0025 31.2 6.3 45 173-219 372-436 (652)
317 KOG1399 Flavin-containing mono 31.8 1.5E+02 0.0032 28.8 6.5 41 178-220 108-153 (448)
318 PRK09853 putative selenate red 31.5 1.3E+02 0.0028 32.5 6.5 54 173-226 718-785 (1019)
319 COG3486 IucD Lysine/ornithine 30.2 1.1E+02 0.0024 28.9 5.2 43 177-219 112-156 (436)
320 COG4635 HemG Flavodoxin [Energ 30.1 56 0.0012 26.4 2.8 79 158-257 12-94 (175)
321 PF03807 F420_oxidored: NADP o 30.1 46 0.00099 23.9 2.3 21 208-228 61-81 (96)
322 KOG1298 Squalene monooxygenase 29.8 5E+02 0.011 24.8 10.3 44 163-209 148-195 (509)
323 PRK06416 dihydrolipoamide dehy 29.7 1.4E+02 0.0031 28.8 6.3 49 166-220 96-146 (462)
324 PRK05976 dihydrolipoamide dehy 29.2 1.7E+02 0.0037 28.4 6.7 50 169-220 99-154 (472)
325 PRK05249 soluble pyridine nucl 28.2 1.5E+02 0.0033 28.6 6.3 47 167-219 99-148 (461)
326 PRK06327 dihydrolipoamide dehy 28.2 1.7E+02 0.0038 28.4 6.6 51 168-220 106-157 (475)
327 COG1053 SdhA Succinate dehydro 26.6 1.1E+02 0.0023 30.7 4.8 56 164-220 140-202 (562)
328 KOG2311 NAD/FAD-utilizing prot 25.7 78 0.0017 30.7 3.4 45 177-222 140-188 (679)
329 COG0492 TrxB Thioredoxin reduc 25.5 1.9E+02 0.0041 26.3 5.9 58 166-227 182-245 (305)
330 PRK07573 sdhA succinate dehydr 24.3 45 0.00098 34.0 1.8 21 360-380 415-435 (640)
331 PRK06467 dihydrolipoamide dehy 23.9 2.1E+02 0.0046 27.8 6.3 46 169-220 100-148 (471)
332 PRK08641 sdhA succinate dehydr 23.3 53 0.0012 33.1 2.1 21 360-380 364-384 (589)
333 TIGR00551 nadB L-aspartate oxi 23.3 59 0.0013 31.9 2.3 22 359-380 341-363 (488)
334 PRK07395 L-aspartate oxidase; 22.0 64 0.0014 32.2 2.3 22 359-380 355-377 (553)
335 TIGR01811 sdhA_Bsu succinate d 21.8 63 0.0014 32.7 2.3 22 359-380 378-399 (603)
336 PLN02507 glutathione reductase 21.7 2.4E+02 0.0052 27.7 6.2 45 170-220 132-179 (499)
337 PRK06263 sdhA succinate dehydr 20.9 63 0.0014 32.2 2.0 22 359-380 356-377 (543)
338 COG1445 FrwB Phosphotransferas 20.5 72 0.0016 24.4 1.7 47 166-220 22-68 (122)
339 KOG4716 Thioredoxin reductase 20.5 1.7E+02 0.0036 27.2 4.3 62 158-221 234-301 (503)
340 PF06072 Herpes_US9: Alphaherp 20.1 79 0.0017 20.6 1.6 18 92-109 5-22 (60)
341 KOG1238 Glucose dehydrogenase/ 20.0 2.1E+02 0.0046 28.8 5.3 60 165-224 255-322 (623)
No 1
>PLN02487 zeta-carotene desaturase
Probab=100.00 E-value=5.2e-44 Score=344.46 Aligned_cols=383 Identities=20% Similarity=0.255 Sum_probs=288.7
Q ss_pred CcccCCCCchHHHHHHHhCCCCCCCccc-ceee-ccCCceeccccccCCCCCCCCcceec-cccCCCCCHhhhhcchhH-
Q 016211 1 MQGFWYPFRNIFSLVDELGIKPFTGWMK-SAQY-SEEGLEVEFPIFQDLNQLPTPLGTLF-YTQFSRLPLVDRLTSLPL- 76 (393)
Q Consensus 1 ~H~~~~~y~~~~~Ll~elG~~~~~~~~~-~~~~-~~~g~~~~~~~~~~~~~~~~p~~~~~-~~~~~~ls~~~k~~~~~~- 76 (393)
+|.|+++|+++++++++||+++...+.. ...+ ..+|+... ..+. .+++.|++... +++++.+++.+|+++...
T Consensus 129 ~h~~~~~~~~~~~ll~~LGl~~~~~~~~~~~~~~~~~g~~~~-~~~~--~p~~~pl~~~~~~l~~~~Ls~~dklr~~~~l 205 (569)
T PLN02487 129 LHVFFGCYNNLFRLMKKVGADENLLVKDHTHTFVNKGGDVGE-LDFR--FPVGAPLHGIKAFLTTNQLEPYDKARNALAL 205 (569)
T ss_pred eeEecCCcHHHHHHHHhcCCcccccccccceeEEecCCEEee-eccC--CCCCchhhhHHHHHcCCCCCHHHHHhhcccc
Confidence 5899999999999999999987655443 3323 23444321 1121 13667776555 889999999999986422
Q ss_pred -----HHHHhhcCCCchhhhcccCccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHhhccCCc
Q 016211 77 -----MAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNF 151 (393)
Q Consensus 77 -----~~~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 151 (393)
+.++.+.+.....+..++++|+.+|+++++.+++++++||+|++.++++.+++++|+.+++.+|..+ ..+..++
T Consensus 206 ~~~~~~~al~~~~~~~~~~~~~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~-~~~~~~~ 284 (569)
T PLN02487 206 ATSPVVRALVDPDGAMRDIRDLDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLF-ATKTEAS 284 (569)
T ss_pred cccchhhhccCccccccccccccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-hhcCCcc
Confidence 1111111101234556788999999999987788999999999999999999999999999988653 2244456
Q ss_pred ceEEecCCchhHhHHHHHHHHHHcCCeEecCceeeeEEecCCC-C--eEEEEEe--C--CeEEecCEEEEecChhhHHHH
Q 016211 152 DLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEER-C--CISDVVC--G--KETYSAGAVVLAVGISTLQEL 224 (393)
Q Consensus 152 ~~~~~~gG~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~-~--~v~~v~~--~--g~~~~ad~VI~a~p~~~~~~L 224 (393)
+++|++||+++.|++++++.|+++|++|+++++|++|..++++ | ++++|++ + ++++.||+||+|+|++.+.+|
T Consensus 285 ~l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~L 364 (569)
T PLN02487 285 LLRMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRL 364 (569)
T ss_pred eeeecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHh
Confidence 7999999999778899999999999999999999999997421 2 3778887 3 457899999999999999999
Q ss_pred hhcccccCcHHHHhhccCCceeEEEEEEEeccCCCCCCCCc------ceeecCC-----Cccc-cceehhhhcc-cc-cC
Q 016211 225 IKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSN------ACSGFGD-----SLAW-TFFDLNKIYD-EH-KD 290 (393)
Q Consensus 225 l~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~------~~~~~~~-----~~~~-~~~~~~~~~~-~~-~~ 290 (393)
+++.. ...+.++++.++.+.++++++|+||++...+...+ .+.+++. ...+ +++++....+ .+ .+
T Consensus 365 lp~~~-~~~~~~~~l~~L~~~pi~tv~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~~~~~~~~~f~~di~l~~~~~~~~~ 443 (569)
T PLN02487 365 LPEQW-REYEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLELSRQLRRAAGLDNLLYSADADFSCFADLALTSPEDYYKE 443 (569)
T ss_pred CCchh-hccHHHhHHhcCCCeeEEEEEEEecccccccccccccccccccccccccccccCCCcceEeeeecCCHHHHccc
Confidence 98863 23455788999989999999999998766432110 1222221 1112 2234321111 12 22
Q ss_pred CCCcEEEEEeecCCCCCCCCHHHHHHHHHHHHhhhhcCCCCCceeeeEEeecCCCccccCCCCcCCCCCCCCCCCceEEe
Q 016211 291 DSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMA 370 (393)
Q Consensus 291 ~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~L~la 370 (393)
.+++++.+++++++++..++++|++++++++|.++||..++.++.++++.+.+++++.+.||+...||.++|+++|||+|
T Consensus 444 ~~g~~l~~vis~a~~~~~~~~~ei~~~~~~~L~~~~p~~~~~~v~~~~vv~~~~at~~~~pg~~~~RP~~~T~~~nl~LA 523 (569)
T PLN02487 444 GEGSLIQAVLTPGDPYMPLSNDKIVEKVHKQVLELFPSSRGLEVTWSSVVKIGQSLYREAPGMDPFRPDQKTPISNFFLA 523 (569)
T ss_pred CCceEEEEEEcCCccccCCCHHHHHHHHHHHHHHhCcccccCceEEEEEEEccCceeccCCCccccCCCCCCCCCCEEEe
Confidence 34678888888888899999999999999999999998766578888999999999999999988889999999999999
Q ss_pred ccccccCCC-----c-cccchhcc
Q 016211 371 GDWITTRHG-----S-WSQVTFKL 388 (393)
Q Consensus 371 Gd~~~~~~g-----a-~s~~~a~~ 388 (393)
||||.+.++ | +||.+||.
T Consensus 524 GD~t~~~yPat~EgAv~SG~~AA~ 547 (569)
T PLN02487 524 GSYTKQDYIDSMEGATLSGRQAAA 547 (569)
T ss_pred CcccccCCcchHHHHHHHHHHHHH
Confidence 999998554 5 67777764
No 2
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=100.00 E-value=3.1e-42 Score=330.35 Aligned_cols=383 Identities=19% Similarity=0.280 Sum_probs=284.2
Q ss_pred CcccCCCCchHHHHHHHhCCCCCCCccc-ceeec-cCCceeccccccCCCCCCCCcceec-cccCCCCCHhhhhcchhHH
Q 016211 1 MQGFWYPFRNIFSLVDELGIKPFTGWMK-SAQYS-EEGLEVEFPIFQDLNQLPTPLGTLF-YTQFSRLPLVDRLTSLPLM 77 (393)
Q Consensus 1 ~H~~~~~y~~~~~Ll~elG~~~~~~~~~-~~~~~-~~g~~~~~~~~~~~~~~~~p~~~~~-~~~~~~ls~~~k~~~~~~~ 77 (393)
+|.|++.|++++++++++|+.+...+.. ...+. .+|+... ..+. .+++.|++... +++++.+++.+|+++...+
T Consensus 53 ~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~P~~~~~~~l~~~~ls~~dklr~~~~~ 129 (474)
T TIGR02732 53 LHVFFGCYANLFRLMKKVGAEDNLLLKEHTHTFVNKGGDIGE-LDFR--FATGAPFNGLKAFFTTSQLKWVDKLRNALAL 129 (474)
T ss_pred eEEecCchHHHHHHHHHcCCccccccccceeEEEcCCCcccc-cccC--CCCCCchhhhHHHhcCCCCCHHHHHHHHHHh
Confidence 4899999999999999999987665543 33333 2343211 1122 13667776554 8889999999999865533
Q ss_pred H--HHh----hcCCCchhhhcccCccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHhhccCCc
Q 016211 78 A--AVI----DFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNF 151 (393)
Q Consensus 78 ~--~~~----~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 151 (393)
. ... +.+...+.+...+++|+.+|+++++.++.++++||+|++.++++.+++++|+.+++.+++.+. ....++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~-~~~~~s 208 (474)
T TIGR02732 130 GTSPIVRGLVDYDGAMKTIRDLDKISFAEWFLSHGGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFA-AKTEAS 208 (474)
T ss_pred hhhHHHhhccccchhhhhhhhhccccHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-hCCCcc
Confidence 1 111 111111334566889999999999888888999999999999999999999999998888553 445567
Q ss_pred ceEEecCCchhHhHHHHHHHHHHcCCeEecCceeeeEEecC--CCC-eEEEEEe-CC---eEEecCEEEEecChhhHHHH
Q 016211 152 DLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDE--ERC-CISDVVC-GK---ETYSAGAVVLAVGISTLQEL 224 (393)
Q Consensus 152 ~~~~~~gG~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~--~~~-~v~~v~~-~g---~~~~ad~VI~a~p~~~~~~L 224 (393)
.+.+++||+++.+.+++.+.|++.|++|+++++|++|..++ ++. ++++|.+ +| +++.||+||+|+|++.+.+|
T Consensus 209 ~~~~~~g~~~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~L 288 (474)
T TIGR02732 209 KLRMLKGSPDKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRL 288 (474)
T ss_pred eeeeecCCcchhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhh
Confidence 88999999998888999999999999999999999999864 211 3666666 33 56899999999999999999
Q ss_pred hhcccccCcHHHHhhccCCceeEEEEEEEeccCCCCCCCCc------ceeecC-----CCccc-cceehhhhcc-cccC-
Q 016211 225 IKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSN------ACSGFG-----DSLAW-TFFDLNKIYD-EHKD- 290 (393)
Q Consensus 225 l~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~------~~~~~~-----~~~~~-~~~~~~~~~~-~~~~- 290 (393)
+++.. ...+.++.+.++.+.++++|+|+|+++...+...+ .+.+.+ ....+ ++++++...+ .+.+
T Consensus 289 l~~~~-~~~~~~~~l~~l~~~pi~~v~l~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (474)
T TIGR02732 289 LPQEW-RQFEEFDNIYKLDAVPVATVQLRYDGWVTELQDLAKRKQLKRAAGLDNLLYTADADFSCFADLALTSPDDYYKE 367 (474)
T ss_pred CChhh-hcCHHHhhHhcCCCCCeEEEEEEeccccccccchhhhhcccccccccccccccCccceeeehhhccCHHHHhcc
Confidence 98742 22345678888999999999999998766432100 011111 11111 1234332112 2321
Q ss_pred CCCcEEEEEeecCCCCCCCCHHHHHHHHHHHHhhhhcCCCCCceeeeEEeecCCCccccCCCCcCCCCCCCCCCCceEEe
Q 016211 291 DSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMA 370 (393)
Q Consensus 291 ~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~L~la 370 (393)
..+.++.++++.++++.+++++++++.++++|+++||..++.++.++++.+.+++++.+.||+..++|..+|+++|||+|
T Consensus 368 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~L~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~~~~~P~~~t~~~~l~lA 447 (474)
T TIGR02732 368 GQGSLLQCVLTPGDPWMPESNEEIAKRVDKQVRALFPSSKNLKLTWSSVVKLAQSLYREAPGMDPFRPDQKTPISNFFLA 447 (474)
T ss_pred CCCeEEEEEEeChhhhcCCCHHHHHHHHHHHHHHhCccccCCceeEEEEEEecCceeccCCCCcccCCCCCCCCCCeEEe
Confidence 23456777777777788899999999999999999998766678888899999999999999988899999999999999
Q ss_pred cccccc-----CCCc-cccchhcc
Q 016211 371 GDWITT-----RHGS-WSQVTFKL 388 (393)
Q Consensus 371 Gd~~~~-----~~ga-~s~~~a~~ 388 (393)
|||+.+ .+|| .||.+||.
T Consensus 448 GD~t~~~~pas~egAv~sG~~aA~ 471 (474)
T TIGR02732 448 GSYTQQDYIDSMEGATLSGRQAAA 471 (474)
T ss_pred ccccccCchHHHhHHHHHHHHHHH
Confidence 999997 5567 68888874
No 3
>PLN02612 phytoene desaturase
Probab=100.00 E-value=1.1e-40 Score=325.58 Aligned_cols=376 Identities=18% Similarity=0.292 Sum_probs=284.2
Q ss_pred CcccCCCCchHHHHHHHhCCCCCCCccc-ceee-cc--CCceeccccccCCCC-CCCCcceec-cc-cCCCCCHhhhhcc
Q 016211 1 MQGFWYPFRNIFSLVDELGIKPFTGWMK-SAQY-SE--EGLEVEFPIFQDLNQ-LPTPLGTLF-YT-QFSRLPLVDRLTS 73 (393)
Q Consensus 1 ~H~~~~~y~~~~~Ll~elG~~~~~~~~~-~~~~-~~--~g~~~~~~~~~~~~~-~~~p~~~~~-~~-~~~~ls~~~k~~~ 73 (393)
+|.+++.|+++.+|++|||+++...+.+ ..++ .. ++.. . .+.. +. +|.|++... ++ +.+.+++.+|+++
T Consensus 147 ~h~~~g~~~~~~~ll~elG~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~-p~~~P~~l~~~~~~l~~~~~ls~~~kl~~ 222 (567)
T PLN02612 147 LHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEF-S--RFDF-PEVLPAPLNGIWAILRNNEMLTWPEKIKF 222 (567)
T ss_pred ceEEeCCCchHHHHHHHhCCcccceecccceEEEecCCCCce-e--eCcC-chhcCChhhhhHHHHhcCccCCHHHHHHH
Confidence 5899999999999999999987766553 2222 22 1221 1 1111 22 566665443 44 4678899999986
Q ss_pred hh-HHHHHhhcCCCchhhhcccCccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHhhccCCcc
Q 016211 74 LP-LMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFD 152 (393)
Q Consensus 74 ~~-~~~~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 152 (393)
.. ++..... ..+.+.++|++|+.+|++++++++.+.+.+|+|++.++++.+++++|+..++..+..+ +...+++.
T Consensus 223 ~~~~~~~~~~---~~~~~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~~~-l~~~~gs~ 298 (567)
T PLN02612 223 AIGLLPAIVG---GQAYVEAQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRF-LQEKHGSK 298 (567)
T ss_pred HHhhhHHhcc---cchhhhhcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHHHH-HhccCCce
Confidence 43 2211111 1233456789999999999999999999999999999999999999999999888775 35556777
Q ss_pred eEEecCCchhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhhHHHHhhccccc
Q 016211 153 LVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELIKNSILC 231 (393)
Q Consensus 153 ~~~~~gG~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~~~~Ll~~~~~~ 231 (393)
..++.|++...++++|++.|++.|++|++|++|++|..+++ +++.+|++ +|+++.||+||+|+|+..++.|++....
T Consensus 299 ~~~~~G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~-g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~Ll~~~~~- 376 (567)
T PLN02612 299 MAFLDGNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELNDD-GTVKHFLLTNGSVVEGDVYVSATPVDILKLLLPDQWK- 376 (567)
T ss_pred EeeecCCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCC-CcEEEEEECCCcEEECCEEEECCCHHHHHHhCcchhc-
Confidence 88888887555889999999999999999999999998765 45656666 6888999999999999999988876421
Q ss_pred CcHHHHhhccCCceeEEEEEEEeccCCCCCCCCcceeecCCCccccceehhhhcccccCCCCcEEEEEeecCCCCCCCCH
Q 016211 232 NREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKD 311 (393)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 311 (393)
..++++.++++.+.++++++++|+++++.+.. ..++. ..+...++++++.....+++++.+++.+++..+++|.++++
T Consensus 377 ~~~~~~~l~~l~~~~v~~v~l~~dr~~~~~~~-~~~~~-~~~~~~~~~d~S~~~~~~~~~~~~ll~~~~~~a~~~~~~sd 454 (567)
T PLN02612 377 EIPYFKKLDKLVGVPVINVHIWFDRKLKNTYD-HLLFS-RSPLLSVYADMSTTCKEYYDPNKSMLELVFAPAEEWISRSD 454 (567)
T ss_pred CcHHHHHHHhcCCCCeEEEEEEECcccCCCCC-ceeec-CCCCceeehhhhhcchhhcCCCCeEEEEEEEcChhhhcCCH
Confidence 13455667778888899999999999864322 22332 22333445666655455555566777777777788999999
Q ss_pred HHHHHHHHHHHhhhhcCCC-----CCceeeeEEeecCCCccccCCCCcCCCCCCCCCCCceEEecccccc-----CCCc-
Q 016211 312 DQVVAKAVSYLSKCIKDFS-----TATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITT-----RHGS- 380 (393)
Q Consensus 312 ~e~~~~~~~~l~~~~p~~~-----~~~~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~L~laGd~~~~-----~~ga- 380 (393)
+|+++.++++|+++||+.. ..+++.+.+.+.|.+.+.+.||...++|.+++|++||||||||+.+ .+||
T Consensus 455 eei~e~vl~~L~~lfp~~~~~~~~~~~i~~~~~v~~P~a~~~~~pg~~~~rp~~~tPi~~l~lAGd~t~~~~~~smeGAv 534 (567)
T PLN02612 455 EDIIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAV 534 (567)
T ss_pred HHHHHHHHHHHHHHCCcccccccCCceEEEEEEeccCCceEEeCCCCcccCccccCccCCEEEeecceeCCchhhHHHHH
Confidence 9999999999999998751 2356777778889988888888877888889999999999999975 6778
Q ss_pred cccchhcc
Q 016211 381 WSQVTFKL 388 (393)
Q Consensus 381 ~s~~~a~~ 388 (393)
.||++||+
T Consensus 535 ~SG~~AA~ 542 (567)
T PLN02612 535 LSGKLCAQ 542 (567)
T ss_pred HHHHHHHH
Confidence 79999985
No 4
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=100.00 E-value=2.4e-37 Score=297.59 Aligned_cols=376 Identities=20% Similarity=0.337 Sum_probs=269.7
Q ss_pred CcccCCCCchHHHHHHHhCCCCCCCccc-ceeecc---CCceeccccccCCCCCCCCcceec-cc-cCCCCCHhhhhcch
Q 016211 1 MQGFWYPFRNIFSLVDELGIKPFTGWMK-SAQYSE---EGLEVEFPIFQDLNQLPTPLGTLF-YT-QFSRLPLVDRLTSL 74 (393)
Q Consensus 1 ~H~~~~~y~~~~~Ll~elG~~~~~~~~~-~~~~~~---~g~~~~~~~~~~~~~~~~p~~~~~-~~-~~~~ls~~~k~~~~ 74 (393)
.|.+++.|+++++++++||++....+.. ..++.. +|.. . .+. .+.+|.|++... ++ ..+.+++.+|+++.
T Consensus 53 ~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~-~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (453)
T TIGR02731 53 LHIFFGAYPNMLQLLKELNIEDRLQWKSHSMIFNQPDKPGTF-S--RFD-FPDIPAPFNGVAAILRNNDMLTWPEKIKFA 128 (453)
T ss_pred cceeccCCchHHHHHHHcCCccceeecCCceEEecCCCCcce-e--ecc-CCCCCCCHHHHHHHhcCcCCCCHHHHHHHH
Confidence 4888999999999999999986655443 223321 2221 1 122 234666665432 33 34468999999866
Q ss_pred hHHHHHhhcCCCchhhhcccCccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHhhccCCcceE
Q 016211 75 PLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLV 154 (393)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 154 (393)
..+..... . ..+.+.++|++|+.+|+++.++++.+.+.+++|++.++++.+++++|+.+++..++.++ ....+....
T Consensus 129 ~~~~~~~~-~-~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~-~~~~g~~~~ 205 (453)
T TIGR02731 129 IGLLPAIV-R-GQKYVEEQDKYTVTEWLRKQGVPERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFL-QERHGSKMA 205 (453)
T ss_pred HHhHHHHh-c-CccchhhhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-hcCCCCeeE
Confidence 43322111 0 12334567899999999998999999999999999999999999999999998887754 334455556
Q ss_pred EecCCchhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCe-----EEecCEEEEecChhhHHHHhhcc
Q 016211 155 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKE-----TYSAGAVVLAVGISTLQELIKNS 228 (393)
Q Consensus 155 ~~~gG~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~-----~~~ad~VI~a~p~~~~~~Ll~~~ 228 (393)
+..|+....++++|.+.+++.|++|++|++|++|..+++ +++.+|++ +|+ ++.||+||+|+|++.+.+|++..
T Consensus 206 ~~~g~~~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~-~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~lL~~~ 284 (453)
T TIGR02731 206 FLDGAPPERLCQPIVDYITSRGGEVRLNSRLKEIVLNED-GSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLLLPQP 284 (453)
T ss_pred eecCCChHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCC-CCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhhCchh
Confidence 676664344889999999999999999999999987654 55767777 454 78999999999999999998753
Q ss_pred cccCcHHHHhhccCCceeEEEEEEEeccCCCCCCCCcceeecCCCccccceehhhhcccccCCCCcEEEEEeecCCCCCC
Q 016211 229 ILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMP 308 (393)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 308 (393)
. ......+.+.++.+.++++++++++++++.+ ...++..+ +.....++.+.....+.+++++++++.+..++++..
T Consensus 285 ~-~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~--~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~ 360 (453)
T TIGR02731 285 W-KQMPFFQKLNGLEGVPVINVHIWFDRKLTTV--DHLLFSRS-PLLSVYADMSETCKEYADPDKSMLELVFAPAADWIG 360 (453)
T ss_pred h-hcCHHHHHhhcCCCCcEEEEEEEEccccCCC--CceeeeCC-CcceeecchhhhChhhcCCCCeEEEEEecChhhhhc
Confidence 2 1133445667777888999999999987632 12223222 222223333322222333456777765556667788
Q ss_pred CCHHHHHHHHHHHHhhhhcCC----CCCceeeeEEeecCCCccccCCCCcCCCCCCCCCCCceEEecccccc-----CCC
Q 016211 309 LKDDQVVAKAVSYLSKCIKDF----STATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITT-----RHG 379 (393)
Q Consensus 309 ~~~~e~~~~~~~~l~~~~p~~----~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~L~laGd~~~~-----~~g 379 (393)
++++|+++.++++|+++||.. ...+++++.+.+.+.+.+.+.||...+++..++|++||||||+|+.+ ++|
T Consensus 361 ~~~ee~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~pg~~~~~~~~~~p~~~l~~AG~~~a~~~~g~~eg 440 (453)
T TIGR02731 361 RSDEEIIDATMAELAKLFPNHIKADSPAKILKYKVVKTPRSVYKTTPGRQQYRPHQKTPIPNFFLAGDYTKQKYLASMEG 440 (453)
T ss_pred CCHHHHHHHHHHHHHHhCCcccCCCCCceEEEEEEEECCCceeccCCCChhhCccccCccCCEEEeehhccCcccccHHH
Confidence 999999999999999999852 12357777888889888877788766778888999999999999974 678
Q ss_pred c-cccchhcc
Q 016211 380 S-WSQVTFKL 388 (393)
Q Consensus 380 a-~s~~~a~~ 388 (393)
| .||++||+
T Consensus 441 Ai~SG~~AA~ 450 (453)
T TIGR02731 441 AVLSGKLCAQ 450 (453)
T ss_pred HHHHHHHHHH
Confidence 8 79999986
No 5
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=100.00 E-value=5.8e-37 Score=292.90 Aligned_cols=363 Identities=25% Similarity=0.319 Sum_probs=265.0
Q ss_pred CcccCCCCchHHHHHHHhCCCCCCCcc-cc-eeeccCCceeccccccCCCCCCCCcceec-cccCCCCCHhhhhcchhHH
Q 016211 1 MQGFWYPFRNIFSLVDELGIKPFTGWM-KS-AQYSEEGLEVEFPIFQDLNQLPTPLGTLF-YTQFSRLPLVDRLTSLPLM 77 (393)
Q Consensus 1 ~H~~~~~y~~~~~Ll~elG~~~~~~~~-~~-~~~~~~g~~~~~~~~~~~~~~~~p~~~~~-~~~~~~ls~~~k~~~~~~~ 77 (393)
.|.+++.|+++.+|++|||++....+. .. .++..+|+... +.. ..+|.|++... +++.+.+++.+|.++.+.+
T Consensus 42 ~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~ 117 (419)
T TIGR03467 42 QHVLLGAYTNLLALLRRIGAEPRLQGPRLPLPFYDPGGRLSR---LRL-SRLPAPLHLARGLLRAPGLSWADKLALARAL 117 (419)
T ss_pred CEEEEcccHHHHHHHHHhCCchhhhcccCCcceecCCCCcee---ecC-CCCCCCHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 388899999999999999998665422 22 22323343211 111 23566766433 5678889999999977655
Q ss_pred HHHhhcCCCchhhhcccCccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHhhccCCcceEEec
Q 016211 78 AAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCR 157 (393)
Q Consensus 78 ~~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (393)
..+.+.. ...++++|+.+|++++++++++++.+++|++.++++.+++++|+.+++..++..+.....+..+.|++
T Consensus 118 ~~~~~~~-----~~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (419)
T TIGR03467 118 LALRRTR-----FRALDDTTVGDWLQAAGQSERLIERLWEPLLLSALNTPPERASAALAAKVLRDSFLAGRAASDLLLPR 192 (419)
T ss_pred HHHHhcC-----ccccCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeC
Confidence 4433211 13468899999999987899999999999999999999999999999888765432323344688999
Q ss_pred CCchhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEE-eCCeEEecCEEEEecChhhHHHHhhcccccCcHHH
Q 016211 158 GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVV-CGKETYSAGAVVLAVGISTLQELIKNSILCNREEF 236 (393)
Q Consensus 158 gG~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~-~~g~~~~ad~VI~a~p~~~~~~Ll~~~~~~~~~~~ 236 (393)
||+++++.++|++.|++.|++|++|++|++|..+++ ++..+. .+|+++.||+||+|+|++++.+|+++. ...
T Consensus 193 gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~~--~~~~~~~~~g~~~~~d~vi~a~p~~~~~~ll~~~-----~~~ 265 (419)
T TIGR03467 193 VPLSELFPEPARRWLDSRGGEVRLGTRVRSIEANAG--GIRALVLSGGETLPADAVVLAVPPRHAASLLPGE-----DLG 265 (419)
T ss_pred CCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEcCC--cceEEEecCCccccCCEEEEcCCHHHHHHhCCCc-----hHH
Confidence 999886667799999889999999999999998874 344333 367889999999999999999998752 222
Q ss_pred HhhccCCceeEEEEEEEeccCCCCCCCCcceeec-CCCccccceehhhhcccccCCCCcEEEEEeecCCCCCCCCHHHHH
Q 016211 237 LKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGF-GDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVV 315 (393)
Q Consensus 237 ~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~ 315 (393)
+.+.++++.++.++++.++++++.+.+ .++. +....+ +++.+... +...++.+.+..++++.++++++++
T Consensus 266 ~~l~~~~~~~~~~v~l~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~e~~~ 336 (419)
T TIGR03467 266 ALLTALGYSPITTVHLRLDRAVRLPAP---MVGLVGGLAQW-LFDRGQLA-----GEPGYLAVVISAARDLVDLPREELA 336 (419)
T ss_pred HHHhhcCCcceEEEEEEeCCCcCCCCC---eeeecCCceeE-EEECCcCC-----CCCCEEEEEEecchhhccCCHHHHH
Confidence 467788888999999999999864332 2222 222222 34432211 1223444444455667788999999
Q ss_pred HHHHHHHhhhhcCCCCCceeeeEEeecCCCccccCCCCcCCCCCCCCCCCceEEecccccc-----CCCc-cccchhcc
Q 016211 316 AKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITT-----RHGS-WSQVTFKL 388 (393)
Q Consensus 316 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~L~laGd~~~~-----~~ga-~s~~~a~~ 388 (393)
+.++++|++++|......+++..+.+|.++.+.+.||....+|...++++||||||||+++ .+|| .||++||+
T Consensus 337 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~aGd~~~~~~~~~~egA~~SG~~aA~ 415 (419)
T TIGR03467 337 DRIVAELRRAFPRVAGAKPLWARVIKEKRATFAATPGLNRLRPGARTPWPNLFLAGDWTATGWPATMEGAVRSGYQAAE 415 (419)
T ss_pred HHHHHHHHHhcCccccCCccceEEEEccCCccccCCcccccCCCCCCCcCCEEEecccccCCCcchHHHHHHHHHHHHH
Confidence 9999999999987533356677788888888888888766677777889999999999996 3478 79999985
No 6
>PRK07233 hypothetical protein; Provisional
Probab=100.00 E-value=2e-32 Score=262.81 Aligned_cols=360 Identities=19% Similarity=0.252 Sum_probs=253.9
Q ss_pred CcccCCCCchHHHHHHHhCCCCCCCccc--ceeeccCCceeccccccCCCCCCCCcceeccccCCCCCHhhhhcchhHHH
Q 016211 1 MQGFWYPFRNIFSLVDELGIKPFTGWMK--SAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMA 78 (393)
Q Consensus 1 ~H~~~~~y~~~~~Ll~elG~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~ls~~~k~~~~~~~~ 78 (393)
.|.+++.++++.+|+++||++....+.. ..++ .+|+.+ +++.|.+ +++++.+++.++++....+.
T Consensus 52 ~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~-~~~~~~---------~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 118 (434)
T PRK07233 52 YHHIFKSDEALLELLDELGLEDKLRWRETKTGYY-VDGKLY---------PLGTPLE---LLRFPHLSLIDKFRLGLLTL 118 (434)
T ss_pred hhhhccccHHHHHHHHHcCCCCceeeccCceEEE-ECCeEe---------cCCCHHH---HHcCCCCCHHHHHHhHHHHH
Confidence 4888999999999999999986544432 2233 244321 1222322 44666788888887544332
Q ss_pred HHhhcCCCchhhhcccCccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHhhcc--CCcceEEe
Q 016211 79 AVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQ--KNFDLVWC 156 (393)
Q Consensus 79 ~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~--~~~~~~~~ 156 (393)
.... .....+++++|+.+|++++ .+++.++.+++|++...++.+++++|+.+++..+........ ....+.++
T Consensus 119 ~~~~----~~~~~~~~~~s~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (434)
T PRK07233 119 LARR----IKDWRALDKVPAEEWLRRW-SGEGVYEVFWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYL 193 (434)
T ss_pred hhhh----cccccccccccHHHHHHHh-cCHHHHHHHHHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEecc
Confidence 2111 1122356889999999986 688888999999999999999999999988766654311111 12347789
Q ss_pred cCCchhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChhhHHHHhhcccccCcHHH
Q 016211 157 RGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEF 236 (393)
Q Consensus 157 ~gG~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~~~~~Ll~~~~~~~~~~~ 236 (393)
+||++. ++++|.+.+++.|++|++|++|++|+.++ +++.++..++++++||+||+|+|+..+.+|++..+ +...
T Consensus 194 ~gG~~~-l~~~l~~~l~~~g~~v~~~~~V~~i~~~~--~~~~~~~~~~~~~~ad~vI~a~p~~~~~~ll~~~~---~~~~ 267 (434)
T PRK07233 194 EGGFAT-LIDALAEAIEARGGEIRLGTPVTSVVIDG--GGVTGVEVDGEEEDFDAVISTAPPPILARLVPDLP---ADVL 267 (434)
T ss_pred CCCHHH-HHHHHHHHHHhcCceEEeCCCeeEEEEcC--CceEEEEeCCceEECCEEEECCCHHHHHhhcCCCc---HHHH
Confidence 999988 88999999999999999999999999876 45665666788899999999999999999886532 2333
Q ss_pred HhhccCCceeEEEEEEEeccCCCCCCCCcceeecC--CCccccceehhhhcccccCCCCcEEEE-Eee-cCCCCCCCCHH
Q 016211 237 LKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFG--DSLAWTFFDLNKIYDEHKDDSATVIQA-DFY-HANELMPLKDD 312 (393)
Q Consensus 237 ~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~-~~~~~~~~~~~ 312 (393)
+.++++.+.++.+++++++++... . ......+ .++..+ +..+...+...+++.+++.+ .+. ..+++..++++
T Consensus 268 ~~~~~~~~~~~~~~~l~~~~~~~~--~-~~~~~~~~~~~~~~~-~~~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 343 (434)
T PRK07233 268 ARLRRIDYQGVVCMVLKLRRPLTD--Y-YWLNINDPGAPFGGV-IEHTNLVPPERYGGEHLVYLPKYLPGDHPLWQMSDE 343 (434)
T ss_pred hhhcccCccceEEEEEEecCCCCC--C-ceeeecCCCCCcceE-EEecccCCccccCCceEEEEeeecCCCChhhcCCHH
Confidence 466778888888999999987642 1 1111111 122222 22333323222234454322 233 23334567899
Q ss_pred HHHHHHHHHHhhhhcCCCCCceeeeEEeecCCCccccCCCCcCCCCCCCCCCCceEEeccccc-----cCCCc-cccchh
Q 016211 313 QVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWIT-----TRHGS-WSQVTF 386 (393)
Q Consensus 313 e~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~L~laGd~~~-----~~~ga-~s~~~a 386 (393)
++++.++++|++++|++....++...+.+|+++.+.+.||+...++..+++++|||||||++. ..+|| .||.+|
T Consensus 344 ~~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~a~~~~~~g~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~~Ai~sG~~a 423 (434)
T PRK07233 344 ELLDRFLSYLRKMFPDFDRDDVRAVRISRAPYAQPIYEPGYLDKIPPYDTPIEGLYLAGMSQIYPEDRSINGSVRAGRRV 423 (434)
T ss_pred HHHHHHHHHHHHhCCCCChhheeeEEEEEeccccccccCchhhcCCCcccCcCCEEEeCCcccCCccCchhHHHHHHHHH
Confidence 999999999999999775456888889999999999888877677777788999999999543 36777 799999
Q ss_pred cc
Q 016211 387 KL 388 (393)
Q Consensus 387 ~~ 388 (393)
|+
T Consensus 424 A~ 425 (434)
T PRK07233 424 AR 425 (434)
T ss_pred HH
Confidence 86
No 7
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.98 E-value=4.9e-31 Score=244.30 Aligned_cols=353 Identities=18% Similarity=0.197 Sum_probs=241.4
Q ss_pred cccCCCCchHHHHHHHhCCCCCCCccc--ceeeccCCceeccccccCCCCCCCCcceeccccCCCCCHhhhhcchhHHHH
Q 016211 2 QGFWYPFRNIFSLVDELGIKPFTGWMK--SAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAA 79 (393)
Q Consensus 2 H~~~~~y~~~~~Ll~elG~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~ls~~~k~~~~~~~~~ 79 (393)
|+|+...+++.+|++|||+++.+.+.. ...+..+|+.+ ++|.+. ++..|.+...+....++.+..
T Consensus 56 ~~f~~~~~~~l~li~eLGled~l~~~~~~~~~i~~~gkl~---------p~P~~~----i~~ip~~~~~~~~~~~~~~~~ 122 (444)
T COG1232 56 HHFLARKEEILDLIKELGLEDKLLWNSTARKYIYYDGKLH---------PIPTPT----ILGIPLLLLSSEAGLARALQE 122 (444)
T ss_pred hheecchHHHHHHHHHhCcHHhhccCCcccceEeeCCcEE---------ECCccc----eeecCCccccchhHHHHHHHh
Confidence 666666799999999999999888663 34223567642 244332 233333333233333333333
Q ss_pred HhhcCCCchhhhcccCccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHhhccC----------
Q 016211 80 VIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQK---------- 149 (393)
Q Consensus 80 ~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~---------- 149 (393)
..+ .+.+...+++|+.+|++++ ++++++++++.|++.++|+.+++++|+......+.... ...+
T Consensus 123 ~~~----~~~~~~~~d~sv~~f~r~~-fG~ev~~~~~~pll~giy~~~~~~LS~~~~~p~~~~~e-~~~~s~~~g~~~~~ 196 (444)
T COG1232 123 FIR----PKSWEPKQDISVGEFIRRR-FGEEVVERFIEPLLEGIYAGDADKLSAAAAFPILARAE-RKYGSLLRGAKKEG 196 (444)
T ss_pred hhc----ccCCCCCCCcCHHHHHHHH-HhHHHHHHHHHHHhhchhcCCHHHhhHHHhcchhhhhh-hhhcchhhhhhhcc
Confidence 222 2234456899999999996 99999999999999999999999999995555554321 1111
Q ss_pred -------CcceEEecCCchhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChhhHH
Q 016211 150 -------NFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ 222 (393)
Q Consensus 150 -------~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~~~~ 222 (393)
...+++++||+++ +++++++.+++. |+++++|++|..+.. .++.+..+|+++.||.||+|+|++.+.
T Consensus 197 ~~~~~~~~~~~~~~~gG~~~-l~~al~~~l~~~---i~~~~~V~~i~~~~~--~~~~~~~~g~~~~~D~VI~t~p~~~l~ 270 (444)
T COG1232 197 LPKQSLKKEKFGYLRGGLQS-LIEALAEKLEAK---IRTGTEVTKIDKKGA--GKTIVDVGGEKITADGVISTAPLPELA 270 (444)
T ss_pred CcccccccccccccCccHHH-HHHHHHHHhhhc---eeecceeeEEEEcCC--ccEEEEcCCceEEcceEEEcCCHHHHH
Confidence 1236778999999 889999988764 999999999999853 255455678889999999999999999
Q ss_pred HHhhcccccCcHHHHhhccCCceeEEEEEEEeccCCCCCCCCc-ceeecC-CC-ccccceehhhhcccccCCCCcEEEEE
Q 016211 223 ELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSN-ACSGFG-DS-LAWTFFDLNKIYDEHKDDSATVIQAD 299 (393)
Q Consensus 223 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~-~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~l~~~~ 299 (393)
.++++.. ......++.+.++++|.++++++.....+++ .++-.+ .. +..++++...+ |...+.+.+++.+.
T Consensus 271 ~ll~~~~-----~~~~~~~~~~~s~~~vv~~~~~~~~~~~~~~~g~~iad~~~~~~a~~~~S~~~-p~~~p~g~~ll~~~ 344 (444)
T COG1232 271 RLLGDEA-----VSKAAKELQYTSVVTVVVGLDEKDNPALPDGYGLLIADDDPYILAITFHSNKW-PHEAPEGKTLLRVE 344 (444)
T ss_pred HHcCCcc-----hhhhhhhccccceEEEEEEeccccccCCCCceEEEEecCCCcceeEEEecccC-CCCCCCCcEEEEEE
Confidence 9999832 1234567788888888889988621111222 122122 22 44556654443 43332355677665
Q ss_pred ee-cC-CCCCCCCHHHHHHHHHHHHhhhhcCCCCCceeeeEEeecCCCccccCCCCcCCCC----CCCCCCCceEEeccc
Q 016211 300 FY-HA-NELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMM----RGFTSFPNLFMAGDW 373 (393)
Q Consensus 300 ~~-~~-~~~~~~~~~e~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~----~~~~~~~~L~laGd~ 373 (393)
++ .. +....++|||+++.++++|.++++... +..+..+.||++++|+|.+|+...+. ...+.++||+.+|.|
T Consensus 345 ~~~~g~~~~~~~~dee~~~~~l~~L~~~~~~~~--~~~~~~v~r~~~~~PqY~vG~~~~~~~ir~~l~~~y~gi~~~G~~ 422 (444)
T COG1232 345 FGGPGDESVSTMSDEELVAAVLDDLKKLGGING--DPVFVEVTRWKYAMPQYEVGHLDRLEPIRAALKGAYPGIKSVGRY 422 (444)
T ss_pred eecCCCcchhccCHHHHHHHHHHHHHHHcCcCc--chhheeeeeccccCCccchhHHHHHHHHHHhhccccCCeEEeccC
Confidence 54 33 334567899999999999999998765 34488899999999999999875432 333345899999999
Q ss_pred ccc--CCCc-cccchhc
Q 016211 374 ITT--RHGS-WSQVTFK 387 (393)
Q Consensus 374 ~~~--~~ga-~s~~~a~ 387 (393)
... ...+ .+|.+|+
T Consensus 423 ~~g~g~~d~I~~g~~aa 439 (444)
T COG1232 423 GEGVGLPDCIAAGKEAA 439 (444)
T ss_pred CCCCCchHHHHHHHHHH
Confidence 875 3334 5665554
No 8
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.97 E-value=4.6e-30 Score=247.73 Aligned_cols=359 Identities=13% Similarity=0.109 Sum_probs=240.1
Q ss_pred cccCCCCchHHHHHHHhCCCCCCCccc--c-eeeccCCceeccccccCCCCCCCCcceeccccCCCCCHhhhhcchhHHH
Q 016211 2 QGFWYPFRNIFSLVDELGIKPFTGWMK--S-AQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMA 78 (393)
Q Consensus 2 H~~~~~y~~~~~Ll~elG~~~~~~~~~--~-~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~ls~~~k~~~~~~~~ 78 (393)
|.+...++++++|+++||+++...+.. . .+| .+|.... +........|.++..+++.+.+++.+|++.+....
T Consensus 61 ~~i~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~-~~~~~~~---~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (463)
T PRK12416 61 DSIVARNEHVMPLVKDLNLEEEMVYNETGISYIY-SDNTLHP---IPSDTIFGIPMSVESLFSSTLVSTKGKIVALKDFI 136 (463)
T ss_pred HHHhcCCHHHHHHHHHcCCccceecCCCCceEEE-ECCeEEE---CCCCCeecCCCChHHhhcCCcCCHHHHHHhhhhhc
Confidence 667788999999999999987654332 2 233 2343211 11000112244444467778888888886543211
Q ss_pred HHhhcCCCchhhhcccCccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHh----------h--
Q 016211 79 AVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIIL----------A-- 146 (393)
Q Consensus 79 ~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~----------~-- 146 (393)
+. .. ...+++|+.+|++++ +++++.+.+++|++.++++.+++++|+..++..+..+.. .
T Consensus 137 ---~~---~~--~~~~~~sv~~~l~~~-~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~ 207 (463)
T PRK12416 137 ---TK---NK--EFTKDTSLALFLESF-LGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENK 207 (463)
T ss_pred ---cC---CC--CCCCCCCHHHHHHHh-cCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhh
Confidence 11 10 124789999999985 899999999999999999999999998765544322110 0
Q ss_pred ----ccCCcceEEecCCchhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhhH
Q 016211 147 ----HQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL 221 (393)
Q Consensus 147 ----~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~~ 221 (393)
......+.+++|||++ ++++|++.+.+ ++|++|++|++|..++ +++. |++ +|+++.||+||+|+|++.+
T Consensus 208 ~~~~~~~~~~~~~~~gG~~~-l~~~l~~~l~~--~~i~~~~~V~~I~~~~--~~~~-v~~~~g~~~~ad~VI~a~p~~~~ 281 (463)
T PRK12416 208 KQFQSAGNKKFVSFKGGLST-IIDRLEEVLTE--TVVKKGAVTTAVSKQG--DRYE-ISFANHESIQADYVVLAAPHDIA 281 (463)
T ss_pred hccCCCCCCceEeeCCCHHH-HHHHHHHhccc--ccEEcCCEEEEEEEcC--CEEE-EEECCCCEEEeCEEEECCCHHHH
Confidence 0112346778999999 78999988754 6899999999999887 4454 555 5778999999999999999
Q ss_pred HHHhhcccccCcHHHHhhccCCceeEEEEEEEeccCCCC-CCCCccee-ecCCCc--cccceehhhhcccccCCCCcEEE
Q 016211 222 QELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTV-PNVSNACS-GFGDSL--AWTFFDLNKIYDEHKDDSATVIQ 297 (393)
Q Consensus 222 ~~Ll~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~-~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~ 297 (393)
.+|++++.+ . ..+.++.+.++.+++++|+++.+. +....++. ..+.+. ..+.+..+.. +... +++.++.
T Consensus 282 ~~ll~~~~l--~---~~~~~~~~~~~~~v~l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~~~s~~~-~~~~-~~~~~l~ 354 (463)
T PRK12416 282 ETLLQSNEL--N---EQFHTFKNSSLISIYLGFDILDEQLPADGTGFIVTENSDLHCDACTWTSRKW-KHTS-GKQKLLV 354 (463)
T ss_pred HhhcCCcch--h---HHHhcCCCCceEEEEEEechhhcCCCCCceEEEeeCCCCCeEEEEEeecCCC-CCcC-CCCeEEE
Confidence 999876432 1 256677788999999999976441 21111121 111111 1222322211 2222 3344443
Q ss_pred EEee-----cCCCCCCCCHHHHHHHHHHHHhhhhcCCCCCceeeeEEeecCCCccccCCCCcCCC----CCCCCCCCceE
Q 016211 298 ADFY-----HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYM----MRGFTSFPNLF 368 (393)
Q Consensus 298 ~~~~-----~~~~~~~~~~~e~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~----~~~~~~~~~L~ 368 (393)
.++. ..+++.+++++|+.+.++++|+++++.. . +++.+.+++|..+.|.+.+|+.... +....+.+|||
T Consensus 355 ~~~~~~~~~~~~~~~~~~dee~~~~~~~~L~~~lG~~-~-~p~~~~v~~W~~a~P~y~~~~~~~~~~~~~~l~~~~~~l~ 432 (463)
T PRK12416 355 RMFYKSTNPVYETIKNYSEEELVRVALYDIEKSLGIK-G-EPEVVEVTNWKDLMPKYHLEHNQAVQSLQEKMMNLYPNIY 432 (463)
T ss_pred EEEeCCCCCCchhhhcCCHHHHHHHHHHHHHHHhCCC-C-CceEEEEEEccccCCCcCcCHHHHHHHHHHHHHhhCCCeE
Confidence 3332 2245667899999999999999999743 2 6788899999999999988864321 12234468999
Q ss_pred Eecccccc--CCCc-cccchhcc
Q 016211 369 MAGDWITT--RHGS-WSQVTFKL 388 (393)
Q Consensus 369 laGd~~~~--~~ga-~s~~~a~~ 388 (393)
+||+|+.+ +++| .||++||+
T Consensus 433 ~aG~~~~g~~i~~ai~sg~~aA~ 455 (463)
T PRK12416 433 LAGASYYGVGIGACIGNGKNTAN 455 (463)
T ss_pred EeccccccccHHHHHHHHHHHHH
Confidence 99999986 7788 79999875
No 9
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.97 E-value=1.4e-29 Score=244.74 Aligned_cols=354 Identities=12% Similarity=0.121 Sum_probs=242.2
Q ss_pred cccCCCCchHHHHHHHhCCCCCCCccc---ceeeccCCceeccccccCCCCCCCCcceeccccCCCCCHhhhhcchhHHH
Q 016211 2 QGFWYPFRNIFSLVDELGIKPFTGWMK---SAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMA 78 (393)
Q Consensus 2 H~~~~~y~~~~~Ll~elG~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~ls~~~k~~~~~~~~ 78 (393)
|.|+..|+++++|+++||+++...+.. ..++..+|+. .+.|.+...+++...+++.+|++... .
T Consensus 60 ~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~g~~-----------~~~p~~~~~~~~~~~~~~~~~~~~~~--~ 126 (462)
T TIGR00562 60 DSFLERKKSAPDLVKDLGLEHVLVSDATGQRYVLVNRGKL-----------MPVPTKIAPFVKTGLFSLGGKLRAGM--D 126 (462)
T ss_pred cccccCChHHHHHHHHcCCCcccccCCCCceEEEECCCce-----------ecCCCChHHHhcCCCCCchhhHHhhh--h
Confidence 788899999999999999987654321 1223222542 12344443455667778888886432 1
Q ss_pred HHhhcCCCchhhhcccCccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHH----------hhcc
Q 016211 79 AVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII----------LAHQ 148 (393)
Q Consensus 79 ~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~----------~~~~ 148 (393)
. +... ....++|+.||++++ +++++.+.+++|++.++++.+++++|+.+++..+.... ....
T Consensus 127 ~---~~~~----~~~~d~s~~e~l~~~-~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~ 198 (462)
T TIGR00562 127 F---IRPA----SPGKDESVEEFVRRR-FGDEVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTR 198 (462)
T ss_pred h---ccCC----CCCCCcCHHHHHHHh-cCHHHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhc
Confidence 1 1100 123469999999985 89999999999999999999999999987765442110 0000
Q ss_pred --------------CCcceEEecCCchhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEE
Q 016211 149 --------------KNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVV 213 (393)
Q Consensus 149 --------------~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI 213 (393)
.+..+..++||+++ ++++|++.+. .++|++|++|++|..+++ ++. |++ +|+++.||+||
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~gG~~~-l~~~l~~~l~--~~~i~~~~~V~~I~~~~~--~~~-v~~~~g~~~~ad~VI 272 (462)
T TIGR00562 199 NLPQGSGLQLTAKKQGQDFQTLATGLET-LPEEIEKRLK--LTKVYKGTKVTKLSHRGS--NYT-LELDNGVTVETDSVV 272 (462)
T ss_pred ccCccccccccccccCCceEecchhHHH-HHHHHHHHhc--cCeEEcCCeEEEEEecCC--cEE-EEECCCcEEEcCEEE
Confidence 01124557899998 8899988774 278999999999998773 354 555 56789999999
Q ss_pred EecChhhHHHHhhcccccCcHHHHhhccCCceeEEEEEEEeccCCCCCCCCc-ceeec-CC--Cccccceehhhhccccc
Q 016211 214 LAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSN-ACSGF-GD--SLAWTFFDLNKIYDEHK 289 (393)
Q Consensus 214 ~a~p~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~-~~~~~-~~--~~~~~~~~~~~~~~~~~ 289 (393)
+|+|++.+..|+++.+ ....+.+.++.|.++.++.++|+++.+.....+ .+... +. .+..++++.+.. +...
T Consensus 273 ~t~P~~~~~~ll~~~~---~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~i~~s~~~-p~~~ 348 (462)
T TIGR00562 273 VTAPHKAAAGLLSELS---NSASSHLDKIHSPPVANVNLGFPEGSVDGELEGFGFLISRSSKFAILGCIFTSKLF-PNRA 348 (462)
T ss_pred ECCCHHHHHHHhcccC---HHHHHHHhcCCCCceEEEEEEEchHHcCCCCCceEEEccCCCCCceEEEEEEcccc-CCcC
Confidence 9999999999987642 334467888999999999999987754211111 11111 11 223345654433 3333
Q ss_pred CCCCcEEEEEee--cCCCCCCCCHHHHHHHHHHHHhhhhcCCCCCceeeeEEeecCCCccccCCCCcCCCCC----CCCC
Q 016211 290 DDSATVIQADFY--HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMR----GFTS 363 (393)
Q Consensus 290 ~~~~~l~~~~~~--~~~~~~~~~~~e~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~----~~~~ 363 (393)
+++.+++.+.+. .+.++.+++++++++.++++|.++++. +. ++....+++|+.+.|.+.+|+....+. ..++
T Consensus 349 p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~~~L~~~~gi-~~-~p~~~~v~rw~~a~P~~~~g~~~~~~~i~~~l~~~ 426 (462)
T TIGR00562 349 PPGKTLLTAYIGGATDESIVDLSENEIINIVLRDLKKVLNI-NN-EPEMLCVTRWHRAIPQYHVGHDQRLKEARELLESA 426 (462)
T ss_pred CCCcEEEEEEeCCCCCccccCCCHHHHHHHHHHHHHHHhCC-CC-CCcEEEEeEccccCCCCCCChHHHHHHHHHHHHhh
Confidence 334455544333 235667789999999999999999974 33 477888999999999999997543322 2244
Q ss_pred CCceEEecccccc--CCCc-cccchhcc
Q 016211 364 FPNLFMAGDWITT--RHGS-WSQVTFKL 388 (393)
Q Consensus 364 ~~~L~laGd~~~~--~~ga-~s~~~a~~ 388 (393)
.+||++||||+.. ..++ .||.+||+
T Consensus 427 ~~~l~l~G~~~~g~~i~~~i~sg~~~a~ 454 (462)
T TIGR00562 427 YPGVFLTGNSFEGVGIPDCIDQGKAAAS 454 (462)
T ss_pred CCCEEEeccccCCCcHHHHHHHHHHHHH
Confidence 5799999999974 6666 68877764
No 10
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.96 E-value=4.9e-28 Score=233.50 Aligned_cols=359 Identities=15% Similarity=0.142 Sum_probs=234.3
Q ss_pred cccCCCCchHHHHHHHhCCCCCCCcc--c-ceeeccCCceeccccccCCCCCCCCcceeccccCCCCCHhhhhcchhHHH
Q 016211 2 QGFWYPFRNIFSLVDELGIKPFTGWM--K-SAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMA 78 (393)
Q Consensus 2 H~~~~~y~~~~~Ll~elG~~~~~~~~--~-~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~ls~~~k~~~~~~~~ 78 (393)
|.+++.++++++|+++||++...... . ..++ .+|+.+. +........|.....++..+.++..++++.....
T Consensus 56 ~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~-~~g~~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 130 (451)
T PRK11883 56 ESFLARKPSAPALVKELGLEDELVANTTGQSYIY-VNGKLHP---IPPGTVMGIPTSIAPFLFAGLVSPIGKLRAAADL- 130 (451)
T ss_pred HHhcCCcHHHHHHHHHcCCccceecCCCCcceEE-ECCeEEE---CCCCCeeccCCCchhhhcCCCCCHHHHHHhhCcc-
Confidence 67788999999999999998543322 1 2233 3555321 1100001122222223345667777777533211
Q ss_pred HHhhcCCCchhhhcccCccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHhh------------
Q 016211 79 AVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILA------------ 146 (393)
Q Consensus 79 ~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~------------ 146 (393)
. ...+...+++|+.+|+++ .++++.++.++.|++.++++.+++++|+..++..+......
T Consensus 131 -----~--~~~~~~~~~~s~~e~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (451)
T PRK11883 131 -----R--PPRWKPGQDQSVGAFFRR-RFGDEVVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKAL 202 (451)
T ss_pred -----c--CCCCCCCCCcCHHHHHHH-hccHHHHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhc
Confidence 0 111223578999999998 48999999999999999999999999998765443321100
Q ss_pred --c--cCCcceEEecCCchhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhhH
Q 016211 147 --H--QKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL 221 (393)
Q Consensus 147 --~--~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~~ 221 (393)
. ..+....+++||++. +.+.+++.+.+. +|++|++|++|..++ +++. |.+ +|+++.||+||+|+|++.+
T Consensus 203 ~~~~~~~~~~~~~~~~G~~~-l~~~l~~~l~~~--~i~~~~~V~~i~~~~--~~~~-v~~~~g~~~~~d~vI~a~p~~~~ 276 (451)
T PRK11883 203 PKEKKKTKGVFGTLKGGLQS-LIEALEEKLPAG--TIHKGTPVTKIDKSG--DGYE-IVLSNGGEIEADAVIVAVPHPVL 276 (451)
T ss_pred cccCCCCCCceEeeccHHHH-HHHHHHHhCcCC--eEEeCCEEEEEEEcC--CeEE-EEECCCCEEEcCEEEECCCHHHH
Confidence 0 012345568899998 778888776432 899999999999877 3454 555 6888999999999999999
Q ss_pred HHHhhcccccCcHHHHhhccCCceeEEEEEEEeccCCC-CCCCCcceeecCC--CccccceehhhhcccccCCCCcEEEE
Q 016211 222 QELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVT-VPNVSNACSGFGD--SLAWTFFDLNKIYDEHKDDSATVIQA 298 (393)
Q Consensus 222 ~~Ll~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~ 298 (393)
.+++.++ +..+.++++.+.++.+++++|++++. .+.....++..+. .+..+.++.. ..+...+++..++..
T Consensus 277 ~~l~~~~-----~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~~p~g~~~~~~ 350 (451)
T PRK11883 277 PSLFVAP-----PAFALFKTIPSTSVATVALAFPESATNLPDGTGFLVARNSDYTITACTWTSK-KWPHTTPEGKVLLRL 350 (451)
T ss_pred HHhccCh-----hHHHHHhCCCCCceEEEEEEeccccCCCCCceEEEecCCCCCcEEEEEeEcC-cCCCCCCCCcEEEEE
Confidence 9986643 22346778888899999999998852 1211222222222 2223334422 222223233445444
Q ss_pred Eee-c-CCCCCCCCHHHHHHHHHHHHhhhhcCCCCCceeeeEEeecCCCccccCCCCcCC----CCCCCCCCCceEEecc
Q 016211 299 DFY-H-ANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKY----MMRGFTSFPNLFMAGD 372 (393)
Q Consensus 299 ~~~-~-~~~~~~~~~~e~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~a~~~~~~g~~~~----~~~~~~~~~~L~laGd 372 (393)
.+. . .....+.+++++++.++++|+++++.. . ++....+.+|.++.+.+.+|+... ++.... ++|||+||+
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~-~-~~~~~~~~rw~~a~p~~~~~~~~~~~~l~~~l~~-~~~l~~aG~ 427 (451)
T PRK11883 351 YVGRPGDEAVVDATDEELVAFVLADLSKVMGIT-G-DPEFTIVQRWKEAMPQYGVGHIERVAELRAGLPH-YPGLYVAGA 427 (451)
T ss_pred ecCCCCCchhccCCHHHHHHHHHHHHHHHhCCC-C-CceEEEEeecCccCCCCCccHHHHHHHHHHhhhh-CCCEEEECc
Confidence 333 2 223456789999999999999999643 2 566788899999999998886432 222222 679999999
Q ss_pred cccc--CCCc-cccchhcc
Q 016211 373 WITT--RHGS-WSQVTFKL 388 (393)
Q Consensus 373 ~~~~--~~ga-~s~~~a~~ 388 (393)
|+.+ .++| .||.+||+
T Consensus 428 ~~~g~~i~~av~sg~~~a~ 446 (451)
T PRK11883 428 SFEGVGLPDCIAQAKRAAA 446 (451)
T ss_pred ccCCccHHHHHHHHHHHHH
Confidence 9974 6667 69988875
No 11
>PLN02576 protoporphyrinogen oxidase
Probab=99.96 E-value=8e-28 Score=234.28 Aligned_cols=356 Identities=13% Similarity=0.131 Sum_probs=237.5
Q ss_pred cccCCCCchHHHHHHHhCCCCCCCccc--c--eeeccCCceeccccccCCCCCCCCcceeccccCCCCCHhhhhcchhHH
Q 016211 2 QGFWYPFRNIFSLVDELGIKPFTGWMK--S--AQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLM 77 (393)
Q Consensus 2 H~~~~~y~~~~~Ll~elG~~~~~~~~~--~--~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~ls~~~k~~~~~~~ 77 (393)
|.|+..++.+..|+++ |+++...+.. . .++ .+|+.+ +.|.++..+++.+.+++.+|++++...
T Consensus 67 ~~~~~~~~~~~~l~~~-gl~~~~~~~~~~~~~~~~-~~g~~~-----------~~p~~~~~~~~~~~~~~~~~~~~~~~~ 133 (496)
T PLN02576 67 NSFQPSDPELTSAVDS-GLRDDLVFPDPQAPRYVV-WNGKLR-----------PLPSNPIDLPTFDLLSAPGKIRAGLGA 133 (496)
T ss_pred chhccCcHHHHHHHHc-CChhheecCCCCceEEEE-ECCEEE-----------EcCCChHHhcCcCcCChhHHHHHhHHH
Confidence 7888899999999988 9986654432 1 222 355432 123343335567788999999765432
Q ss_pred HHHhhcCCCchhhhcccCccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHH-----------H--
Q 016211 78 AAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFI-----------I-- 144 (393)
Q Consensus 78 ~~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~-----------~-- 144 (393)
....+.. ...+++|+.+|++++ +++++++.+++|++.++++.+++++|+..++..+... +
T Consensus 134 ~~~~~~~------~~~~~~sv~~~l~~~-~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~ 206 (496)
T PLN02576 134 FGWKRPP------PPGREESVGEFVRRH-LGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKA 206 (496)
T ss_pred hhccCCC------CCCCCCcHHHHHHHh-cCHHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHh
Confidence 2211111 124789999999985 8999999999999999999999999999876554321 0
Q ss_pred -hhc---------------cCCcceEEecCCchhHhHHHHHHHHHHcC-CeEecCceeeeEEecCCCCeEEEEEe---CC
Q 016211 145 -LAH---------------QKNFDLVWCRGTLREKIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC---GK 204 (393)
Q Consensus 145 -~~~---------------~~~~~~~~~~gG~~~~l~~~l~~~l~~~G-~~i~l~~~V~~I~~~~~~~~v~~v~~---~g 204 (393)
... ..+.....++|||++ |+++|++.+ + ++|++|++|++|+.+++ +++ .|++ +|
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~-L~~~la~~l---~~~~i~l~~~V~~I~~~~~-~~~-~v~~~~~~g 280 (496)
T PLN02576 207 IQEAKKNPKPEPRDPRLPKPKGQTVGSFRGGLQT-LPDALAKRL---GKDKVKLNWKVLSLSKNDD-GGY-SLTYDTPEG 280 (496)
T ss_pred hhhhcccccccccccccccccCCeeEeccchHHH-HHHHHHHhh---CcCcEEcCCEEEEEEECCC-CcE-EEEEecCCC
Confidence 000 012234667899998 788888765 4 68999999999998774 323 2433 34
Q ss_pred -eEEecCEEEEecChhhHHHHhhcccccCcHHHHhhccCCceeEEEEEEEeccCCCCCC-----CCcceeec-C---CC-
Q 016211 205 -ETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPN-----VSNACSGF-G---DS- 273 (393)
Q Consensus 205 -~~~~ad~VI~a~p~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~-----~~~~~~~~-~---~~- 273 (393)
+++.||+||+|+|+.++..|+++.. +...+.+.++.|.++.+|+++|+++.+... +.. .++. . .+
T Consensus 281 ~~~~~ad~VI~a~P~~~l~~ll~~~~---~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~-~~g~l~~~~~~~ 356 (496)
T PLN02576 281 KVNVTAKAVVMTAPLYVVSEMLRPKS---PAAADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLE-GFGQLHPRKQGV 356 (496)
T ss_pred ceeEEeCEEEECCCHHHHHHHhcccC---HHHHHHhccCCCCceEEEEEEEchHHcccccccCCCCC-ceEEEccCCCCC
Confidence 4699999999999999999987642 334456788899999999999998765321 111 1111 1 11
Q ss_pred -ccccceehhhhcccccCCCCcEEEEEee--cCCCCCCCCHHHHHHHHHHHHhhhhcCCCCCceeeeEEeecCCCccccC
Q 016211 274 -LAWTFFDLNKIYDEHKDDSATVIQADFY--HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFF 350 (393)
Q Consensus 274 -~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~e~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~a~~~~~ 350 (393)
...++++.+ ..+...+++..++...+. .++++.+++++++++.++++|.++++......+....+++|+.++|.+.
T Consensus 357 ~~lg~~~~s~-~~p~~~~~~~~~l~~~~~~~~~~~~~~~s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~a~P~~~ 435 (496)
T PLN02576 357 KTLGTIYSSS-LFPDRAPEGRVLLLNYIGGSRNTGIASASEEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPKAIPQYL 435 (496)
T ss_pred ceEEEEeecC-cCCCCCCCCCEEEEEEECCCCCcccccCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCcccCCCC
Confidence 112244322 223333223334333222 2356778899999999999999999742211345566789999999999
Q ss_pred CCCcCCCCCCCC---CC--CceEEecccccc--CCCc-cccchhcc
Q 016211 351 PGSYKYMMRGFT---SF--PNLFMAGDWITT--RHGS-WSQVTFKL 388 (393)
Q Consensus 351 ~g~~~~~~~~~~---~~--~~L~laGd~~~~--~~ga-~s~~~a~~ 388 (393)
+|+....+..+. .. +|||+||||+.. ++|| .||.+||+
T Consensus 436 ~g~~~~~~~~~~~l~~~~~~~l~~aG~~~~g~~i~~ai~sg~~aA~ 481 (496)
T PLN02576 436 LGHLDVLEAAEKMEKDLGLPGLFLGGNYRGGVALGKCVESGYEAAD 481 (496)
T ss_pred cCHHHHHHHHHHHHHhcCCCCEEEeccccCCccHHHHHHHHHHHHH
Confidence 998643321111 22 799999999986 6778 69988875
No 12
>PRK07208 hypothetical protein; Provisional
Probab=99.96 E-value=1.7e-27 Score=231.05 Aligned_cols=357 Identities=15% Similarity=0.121 Sum_probs=230.4
Q ss_pred cccCCCCchHHHHHHHhCCCCCCCcc-c-ceeeccCCceeccccccCCCCCCCCcceeccccCCCCCHhhhhcchhHHHH
Q 016211 2 QGFWYPFRNIFSLVDELGIKPFTGWM-K-SAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAA 79 (393)
Q Consensus 2 H~~~~~y~~~~~Ll~elG~~~~~~~~-~-~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~ls~~~k~~~~~~~~~ 79 (393)
|.|+..++++++|++|||.+...... . ..++ .+|+.+ +.|++....+ ..+++.++++.+.....
T Consensus 58 h~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~g~~~-----------~~p~~~~~~l--~~~~~~~~~~~~~~~~~ 123 (479)
T PRK07208 58 HRFFSKSPEVMDLWNEILPDDDFLLRPRLSRIY-YRGKFF-----------DYPLKAFDAL--KNLGLWRTAKCGASYLK 123 (479)
T ss_pred ceeccCCHHHHHHHHHhcCCCccccccccceEE-ECCEEe-----------cCCcchhHHH--HhCCHhHHHHHHHHHHH
Confidence 88899999999999999974332222 1 2233 245421 1233322222 23556665553321111
Q ss_pred HhhcCCCchhhhcccCccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHH---------HHHHHhhc---
Q 016211 80 VIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGI---------LYFIILAH--- 147 (393)
Q Consensus 80 ~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~---------~~~~~~~~--- 147 (393)
. +.. ...+++|+.+|++++ +++++++.++.|++.++|+.+++++|+.+++.. ++..+...
T Consensus 124 ~-~~~------~~~~~~s~~e~l~~~-~g~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (479)
T PRK07208 124 A-RLR------PRKEEDSFEDWVINR-FGRRLYSTFFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGL 195 (479)
T ss_pred H-hcC------CCCCCCCHHHHHHHh-hCHHHHHHHHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccc
Confidence 0 110 013689999999984 899999999999999999999999999865432 22121110
Q ss_pred ------c---CCcceEEecCCchhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe---CC--eEEecCEEE
Q 016211 148 ------Q---KNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK--ETYSAGAVV 213 (393)
Q Consensus 148 ------~---~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g--~~~~ad~VI 213 (393)
. ....+.+++||++. ++++|++.+++.|++|++|++|++|..+++ +.+..++. +| .++.||+||
T Consensus 196 ~~~~~~~~~~~~~~~~~p~gG~~~-l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~-~~v~~~~~~~~~g~~~~~~ad~VI 273 (479)
T PRK07208 196 KRRNKEVETSLIEEFRYPKLGPGQ-LWETAAEKLEALGGKVVLNAKVVGLHHDGD-GRIAVVVVNDTDGTEETVTADQVI 273 (479)
T ss_pred cccCCCccccceeEEeCCCCCcch-HHHHHHHHHHHcCCEEEeCCEEEEEEEcCC-cEEEEEEEEcCCCCEEEEEcCEEE
Confidence 0 01356788999998 889999999999999999999999999874 33444443 24 268999999
Q ss_pred EecChhhHHHHhhcccccCcHHHHhhccCCceeEEEEEEEeccCCCCCCCCcceeecCCC--ccccceehhhhcccccCC
Q 016211 214 LAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDS--LAWTFFDLNKIYDEHKDD 291 (393)
Q Consensus 214 ~a~p~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 291 (393)
+|+|++.+.+++++... ....+.+.++.+.++++++++++++...+. ..++-.+.. +.. +...+...+...++
T Consensus 274 ~a~p~~~l~~~l~~~~~--~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~--~~~~~~~~~~~~~r-~~~~~~~~~~~~p~ 348 (479)
T PRK07208 274 SSMPLRELVAALDPPPP--PEVRAAAAGLRYRDFITVGLLVKELNLFPD--NWIYIHDPDVKVGR-LQNFNNWSPYLVPD 348 (479)
T ss_pred ECCCHHHHHHhcCCCCC--HHHHHHHhCCCcceeEEEEEEecCCCCCCC--ceEEecCCCCccce-ecccccCCcccCCC
Confidence 99999998888764221 233345678888888999999998754322 112111111 110 11111221222223
Q ss_pred CC-cEEEEEee--cCCCCCCCCHHHHHHHHHHHHhhhhcCCCCCceeeeEEeecCCCccccCCCCcCCCCC---CCCCCC
Q 016211 292 SA-TVIQADFY--HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMR---GFTSFP 365 (393)
Q Consensus 292 ~~-~l~~~~~~--~~~~~~~~~~~e~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~---~~~~~~ 365 (393)
+. ..+...++ ..++.++++++++++.++++|+++.+ +.+..++.+++.+|+.++|.+.+|+....+. ..++.+
T Consensus 349 g~~~~l~~~~~~~~~~~~~~~~deel~~~~~~~L~~l~~-~~~~~~~~~~v~r~~~a~P~y~~~~~~~~~~~~~~~~~~~ 427 (479)
T PRK07208 349 GRDTWLGLEYFCFEGDDLWNMSDEDLIALAIQELARLGL-IRPADVEDGFVVRVPKAYPVYDGTYERNVEIIRDLLDHFP 427 (479)
T ss_pred CCceEEEEEEEccCCCccccCCHHHHHHHHHHHHHHcCC-CChhheeEEEEEEecCcccCCCchHHHHHHHHHHHHHhcC
Confidence 33 23333232 33455578999999999999999854 3344788999999999999999887543221 225678
Q ss_pred ceEEeccccc----cCCCc-cccchhcc
Q 016211 366 NLFMAGDWIT----TRHGS-WSQVTFKL 388 (393)
Q Consensus 366 ~L~laGd~~~----~~~ga-~s~~~a~~ 388 (393)
|||+||++.. +.++| .||.+||+
T Consensus 428 ~l~laGr~~~~~~~~~d~a~~sg~~~a~ 455 (479)
T PRK07208 428 NLHLVGRNGMHRYNNQDHSMLTAMLAVE 455 (479)
T ss_pred CceeeccccccccCChhHHHHHHHHHHH
Confidence 9999997543 35566 68866653
No 13
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.96 E-value=1.7e-28 Score=226.26 Aligned_cols=382 Identities=22% Similarity=0.291 Sum_probs=278.7
Q ss_pred CcccCCCCchHHHHHHHhCCCCCCCccc-ceeec-cCCceeccccccCCCCCCCCcceec-cccCCCCCHhhhhcch-hH
Q 016211 1 MQGFWYPFRNIFSLVDELGIKPFTGWMK-SAQYS-EEGLEVEFPIFQDLNQLPTPLGTLF-YTQFSRLPLVDRLTSL-PL 76 (393)
Q Consensus 1 ~H~~~~~y~~~~~Ll~elG~~~~~~~~~-~~~~~-~~g~~~~~~~~~~~~~~~~p~~~~~-~~~~~~ls~~~k~~~~-~~ 76 (393)
+|+||++|+|++.||+|++.++.+++.+ ..++. ..++.-...+|.. +..|.|++... +++.+.+++++|++++ ++
T Consensus 54 lh~f~~~Y~n~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~p~p~~~~~~~l~~~~~~~~~~~~~~~~l 132 (485)
T COG3349 54 LHVFFGCYYNLLTLLKELPIEDRLQLREHTKTFVGSGTRPGAIGRFAR-PDAPQPTNGLKAFLRLPQLPRREKIRFVLRL 132 (485)
T ss_pred eEEechhHHHHHHHhhhCCchheeehHhhhhhhcccCCCCCccccccc-CCCCCcchhhhhhhhccccCHHHHhHHhhcc
Confidence 5999999999999999999997777664 44552 1111101112332 33556777655 8889999999999864 22
Q ss_pred HHHHhhcCCCchhhhcccCccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHhhccCCcceEEe
Q 016211 77 MAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWC 156 (393)
Q Consensus 77 ~~~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 156 (393)
...... ..+.++++|++|++||+++++.++..++..|.|++..+.+.+++.+|+..++.++..++....++.....+
T Consensus 133 ~~~~~g---~~~~~~eld~~s~~d~l~~~g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~~~~~i~~~~ 209 (485)
T COG3349 133 GDAPIG---ADRSLRELDKISFADWLKEKGAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVTLEASILRNL 209 (485)
T ss_pred ccccch---hHHHHHHHhcccHHHHHHHhCCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhccCcchhhhh
Confidence 211110 25677889999999999999899999999999999999999999999998888887765444355667778
Q ss_pred cCCchhHhHHHHHHHHHHcCCeEecCceeeeEEecCCC--CeEEEEEeCCe---EEecCEEEEecChhhHHHHhhccccc
Q 016211 157 RGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEER--CCISDVVCGKE---TYSAGAVVLAVGISTLQELIKNSILC 231 (393)
Q Consensus 157 ~gG~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~--~~v~~v~~~g~---~~~ad~VI~a~p~~~~~~Ll~~~~~~ 231 (393)
+|+..+.+..++.+.+.+.|.+++.+.+|+.|..+..+ ..++++.+.+. ...++.|+.+...+.+..+++....
T Consensus 210 ~g~~~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~v~~~~~~~ps~W~- 288 (485)
T COG3349 210 RGSPDEVLLQPWTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVTGPEQEQQAALAVVDAFAVQRFKRDLPSEWP- 288 (485)
T ss_pred cCCCcceeeehhhhhccccCceeeccceeeeeeccccccccceEeeeecCcceEeeehhhhhcccccchHhhcCccccc-
Confidence 89999988899999999999999999999999987632 24667766553 3455667777777777777777542
Q ss_pred CcHHHHhhccCCceeEEEEEEEeccCCCCCCCCcceeec------CCCccccceehhhhcccccCCCC-cEEEEEeecCC
Q 016211 232 NREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGF------GDSLAWTFFDLNKIYDEHKDDSA-TVIQADFYHAN 304 (393)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~ 304 (393)
+...+..+..+...++++++++++...+.....+..++. +.+...+++++....+.+..++. +.+..+.++..
T Consensus 289 ~~~~f~~ly~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~dn~~~s~~~l~~~~ad~~~~~~~y~e~g~~~~le~~~~~~~ 368 (485)
T COG3349 289 KWSNFDGLYGLRLVPVITLHLRFDGWVTELTDRNQQFGIDNLLWSDDTLGGVVADLALTSPDYVEPGAGCYLEKVLAPGW 368 (485)
T ss_pred ccccccccccccccceeEEEEeecCccccccccchhhhhhccccccccCCceeeeccccchhhccccchhhhhhhhcccc
Confidence 244556788888889999999998644321111111111 12334456666655444443332 34444455677
Q ss_pred CCCCCCHHHHHHHHHHHHhhhhcCCCCCceeeeEEeecCCCccccCCCCcCCCCCCCCCCCceEEecccccc-----CCC
Q 016211 305 ELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITT-----RHG 379 (393)
Q Consensus 305 ~~~~~~~~e~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~L~laGd~~~~-----~~g 379 (393)
.|...+++++...+.+.+..++|...+.. ...++.+.+.+++...||...+||...||++|++++|||+.. +.|
T Consensus 369 ~~~~~~~~~~~a~~e~~~~~~vP~~~~a~-~~~~~i~~~q~~~~~~pgs~~~rP~~~Tpv~N~~laGd~~~~~~~~smE~ 447 (485)
T COG3349 369 PFLFESDEAIVATFEKELYELVPSLAEAK-LKSSVLVNQQSLYGLAPGSYHYRPEQKTPIPNLLLAGDYTKQPYLGSMEG 447 (485)
T ss_pred cccccchhhHHHHHHHHhhhcCCchhccc-ccccceeccccccccCCCccccCCCCCCCccchhhccceeecCCcCccch
Confidence 78888899999999999999998865544 667778888999999999999999999999999999999975 666
Q ss_pred c-cccchhcc
Q 016211 380 S-WSQVTFKL 388 (393)
Q Consensus 380 a-~s~~~a~~ 388 (393)
| .||-+||+
T Consensus 448 A~~sGl~AA~ 457 (485)
T COG3349 448 ATLSGLLAAN 457 (485)
T ss_pred hhhhHHHHHH
Confidence 6 67777763
No 14
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.89 E-value=1.9e-21 Score=189.17 Aligned_cols=286 Identities=15% Similarity=0.147 Sum_probs=179.1
Q ss_pred ccCccHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHhhccCCcceEEecCCchhHhHHHHHHH
Q 016211 93 YDSITARELFKQFG-CSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDS 171 (393)
Q Consensus 93 ~d~~s~~~~l~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~l~~~l~~~ 171 (393)
+..+|+.+|+++++ +.++.++.++...+....+.++++.++.+.+.++..+ .. .....+++||+++ |+++|++.
T Consensus 167 ~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~G~~~~~GG~~~-l~~aL~~~ 241 (492)
T TIGR02733 167 LSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQEDADETAALYGATVLQMA--QA--PHGLWHLHGSMQT-LSDRLVEA 241 (492)
T ss_pred hhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhccCChhhhhHHHHHHHhhcc--cc--CCCceeecCcHHH-HHHHHHHH
Confidence 45799999999863 3444456777765543445677788877665444321 11 1235779999999 89999999
Q ss_pred HHHcCCeEecCceeeeEEecCCCCeEEEEEe-CC-----eEEecCEEEEecChhhHHHHhhcccccCcHHHHhhccCCce
Q 016211 172 MRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK-----ETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASI 245 (393)
Q Consensus 172 l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g-----~~~~ad~VI~a~p~~~~~~Ll~~~~~~~~~~~~~~~~~~~~ 245 (393)
+++.|++|+++++|++|..++ +++.+|++ +| +++.||+||+|+|+..+.+|++...++ ....+.++++.+.
T Consensus 242 ~~~~G~~i~~~~~V~~I~~~~--~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll~~~~~~-~~~~~~~~~~~~s 318 (492)
T TIGR02733 242 LKRDGGNLLTGQRVTAIHTKG--GRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLELLGPLGLP-PGYRKRLKKLPEP 318 (492)
T ss_pred HHhcCCEEeCCceEEEEEEeC--CeEEEEEEecCCCCceEEEECCEEEECCCHHHHHHhcCcccCC-HHHHHHHhcCCCC
Confidence 999999999999999999987 45556655 44 578999999999999998888754321 2233456677765
Q ss_pred e-EEEEEEEeccCCC-CCCCCcceeecCCCccccceehhhhcccccCCCCcEEEE-EeecCCCCCC-------CCHHHHH
Q 016211 246 D-VVSVKLWFDKKVT-VPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQA-DFYHANELMP-------LKDDQVV 315 (393)
Q Consensus 246 ~-~~~v~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~-------~~~~e~~ 315 (393)
+ .+++++++++... ........+.++.. ...+...+...+..++++.+.+.+ ++.+...|.. ..++++.
T Consensus 319 ~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~d~~~aP~G~~~l~~~~~~~~~~~~~~~~~~y~~~k~~~~ 397 (492)
T TIGR02733 319 SGAFVFYLGVKRAALPVDCPPHLQFLSDHQ-GSLFVSISQEGDGRAPQGEATLIASSFTDTNDWSSLDEEDYTAKKKQYT 397 (492)
T ss_pred CceEEEEEeecccccCCCCCcceeeccCCC-ceEEEEeCCccccCCCCCceEEEEEcCCCHHHHcCCCHHHHHHHHHHHH
Confidence 4 5688999987421 11111111111211 111222222223344445555533 2232222221 1256688
Q ss_pred HHHHHHHhhhhcCCCCCceeeeEEee----------cCCCccccCCCCc---CCCCCCCCCCCceEEeccccccCCCc--
Q 016211 316 AKAVSYLSKCIKDFSTATVMDHKIRR----------FPKSLTHFFPGSY---KYMMRGFTSFPNLFMAGDWITTRHGS-- 380 (393)
Q Consensus 316 ~~~~~~l~~~~p~~~~~~~~~~~~~~----------~~~a~~~~~~g~~---~~~~~~~~~~~~L~laGd~~~~~~ga-- 380 (393)
+++++.+++++|++++ +++...+.. ..++.+...+... ..++..+++++|||+||++++++.|-
T Consensus 398 ~~il~~le~~~p~l~~-~i~~~~v~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~~~~~~t~i~gLyl~G~~~~pG~Gv~g 476 (492)
T TIGR02733 398 QTIIERLGHYFDLLEE-NWVHVELATPRTFERWTGRPQGIVGGLGQRPSTFGPFGLSSRTPVKGLWLCGDSIHPGEGTAG 476 (492)
T ss_pred HHHHHHHHHHCCCccc-cEEEEEccCCchHHHHhCCCCcEECCCCcCccccCCcCCCCCCCCCCeEEecCccCCCCcHHH
Confidence 9999999999999975 665554421 1233333322111 12344478999999999999986554
Q ss_pred --cccchhcc
Q 016211 381 --WSQVTFKL 388 (393)
Q Consensus 381 --~s~~~a~~ 388 (393)
+||..||+
T Consensus 477 ~~~sg~~~a~ 486 (492)
T TIGR02733 477 VSYSALMVVR 486 (492)
T ss_pred HHHHHHHHHH
Confidence 48877775
No 15
>PLN02268 probable polyamine oxidase
Probab=99.89 E-value=1.2e-21 Score=187.76 Aligned_cols=268 Identities=17% Similarity=0.113 Sum_probs=175.1
Q ss_pred cccCccHHHHHHHcC----------CCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHhhccCCcceEEecCCch
Q 016211 92 KYDSITARELFKQFG----------CSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLR 161 (393)
Q Consensus 92 ~~d~~s~~~~l~~~~----------~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~ 161 (393)
..+++|+.+|+++.. +++++++.++.| +.+.++.+++++|+..+.. ... .. + ...++.+|++
T Consensus 130 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ls~~~~~~--~~~-~~---g-~~~~~~~G~~ 201 (435)
T PLN02268 130 HEEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCR-MEGWFAADADTISLKSWDQ--EEL-LE---G-GHGLMVRGYD 201 (435)
T ss_pred cCCCcCHHHHHHHHhhhCcccccchHHHHHHHHHHHH-HHHHhCCChHhCchhhcCC--ccc-cC---C-CceeecCCHH
Confidence 357899999876531 344455555566 4567888999999875311 000 01 1 1245778988
Q ss_pred hHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhhHHHH-h-hcccccCcHH-HH
Q 016211 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQEL-I-KNSILCNREE-FL 237 (393)
Q Consensus 162 ~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~~~~L-l-~~~~~~~~~~-~~ 237 (393)
. ++++|.+ +.+|++|++|++|..+++ .+. |++ +|+++.||+||+|+|+..++++ + ..+++ ++. .+
T Consensus 202 ~-l~~~l~~-----~~~i~~~~~V~~i~~~~~--~v~-v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~l--p~~~~~ 270 (435)
T PLN02268 202 P-VINTLAK-----GLDIRLNHRVTKIVRRYN--GVK-VTVEDGTTFVADAAIIAVPLGVLKANIIKFEPEL--PEWKEE 270 (435)
T ss_pred H-HHHHHhc-----cCceeCCCeeEEEEEcCC--cEE-EEECCCcEEEcCEEEEecCHHHHhcCcceecCCC--CHHHHH
Confidence 7 6666643 568999999999998874 364 555 6778999999999999998753 2 22222 232 35
Q ss_pred hhccCCceeEEEEEEEeccCCCCCCCCcceeecCCC--ccccceehhhhcccccCCCCcEEEEEee--cCCCCCCCCHHH
Q 016211 238 KVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDS--LAWTFFDLNKIYDEHKDDSATVIQADFY--HANELMPLKDDQ 313 (393)
Q Consensus 238 ~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~e 313 (393)
.++++.+.++.++.+.|++++|.. . .+++...+ .....++.. .. .++..++.+... .+.++.++++++
T Consensus 271 ai~~~~~g~~~Kv~l~f~~~fw~~-~--~~~g~~~~~~~~~~~~~~~--~~---~~g~~~l~~~~~g~~a~~~~~~~~~e 342 (435)
T PLN02268 271 AISDLGVGIENKIALHFDSVFWPN-V--EFLGVVAPTSYGCSYFLNL--HK---ATGHPVLVYMPAGRLARDIEKLSDEA 342 (435)
T ss_pred HHHhCCccceeEEEEEeCCCCCCC-C--ceeeccCCCCCCceEEEec--cc---CCCCCEEEEEeccHHHHHHHhCCHHH
Confidence 678888888999999999998832 1 23332111 111112111 01 123344433232 235667789999
Q ss_pred HHHHHHHHHhhhhcCCCCCceeeeEEeecCCC------ccccCCCCc-CCCCCCCCCCCceEEecccccc-----CCCc-
Q 016211 314 VVAKAVSYLSKCIKDFSTATVMDHKIRRFPKS------LTHFFPGSY-KYMMRGFTSFPNLFMAGDWITT-----RHGS- 380 (393)
Q Consensus 314 ~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~a------~~~~~~g~~-~~~~~~~~~~~~L~laGd~~~~-----~~ga- 380 (393)
+++.++++|.+++|... +++...+++|... ...+.||.. ...+..++|+++|||||++++. ++||
T Consensus 343 ~~~~v~~~L~~~~~~~~--~p~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~l~~p~~~l~FAGe~ts~~~~g~~eGA~ 420 (435)
T PLN02268 343 AANFAMSQLKKMLPDAT--EPVQYLVSRWGSDPNSLGCYSYDLVGKPHDLYERLRAPVDNLFFAGEATSSDFPGSVHGAY 420 (435)
T ss_pred HHHHHHHHHHHHcCCCC--CccEEEecccCCCCCCCccCCCCCCCCCHHHHHHHhCCCCCeEEeeccCCCcccccHHHHH
Confidence 99999999999998643 5677778888622 222346643 2334456788999999999986 6799
Q ss_pred cccchhcc
Q 016211 381 WSQVTFKL 388 (393)
Q Consensus 381 ~s~~~a~~ 388 (393)
.||+|||+
T Consensus 421 ~sG~raA~ 428 (435)
T PLN02268 421 STGVMAAE 428 (435)
T ss_pred HHHHHHHH
Confidence 79999985
No 16
>PLN02529 lysine-specific histone demethylase 1
Probab=99.84 E-value=1.9e-19 Score=177.90 Aligned_cols=276 Identities=14% Similarity=0.102 Sum_probs=168.4
Q ss_pred cccCccHHHHHHHcC------CCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHhhccCCcceEEecCCchhHhH
Q 016211 92 KYDSITARELFKQFG------CSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIF 165 (393)
Q Consensus 92 ~~d~~s~~~~l~~~~------~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~l~ 165 (393)
..+++|+.+|+++.. .+++. +.+++..+..+....+..++...+....... ....+.....+.||++. ++
T Consensus 285 ~~~d~Sl~~~le~~~~~~~~~~t~~e-~~ll~~~~~~le~a~~~~~s~LSl~~~~~~~--~~e~~G~~~~i~GG~~~-Li 360 (738)
T PLN02529 285 FANDISLGSVLERLRQLYGVARSTEE-RQLLDWHLANLEYANAGCLSDLSAAYWDQDD--PYEMGGDHCFLAGGNWR-LI 360 (738)
T ss_pred CccCCCHHHHHHHHHhhhccCCCHHH-HHHHHHHHHHhceecCCChHHhhhhHhhhcc--ccccCCceEEECCcHHH-HH
Confidence 357899999998642 34443 3455544433333334444433333222211 01122334667899987 77
Q ss_pred HHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChhhHHH--HhhcccccCcHHHHhhccCC
Q 016211 166 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE--LIKNSILCNREEFLKVLNLA 243 (393)
Q Consensus 166 ~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~~~~~--Ll~~~~~~~~~~~~~~~~~~ 243 (393)
++|++ +.+|++|++|++|..+++ +|. |+++++++.||+||+|+|+.++++ +...++++ ....+.++++.
T Consensus 361 ~aLA~-----~L~IrLnt~V~~I~~~~d--GVt-V~t~~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP-~~K~~AI~rL~ 431 (738)
T PLN02529 361 NALCE-----GVPIFYGKTVDTIKYGND--GVE-VIAGSQVFQADMVLCTVPLGVLKKRTIRFEPELP-RRKLAAIDRLG 431 (738)
T ss_pred HHHHh-----cCCEEcCCceeEEEEcCC--eEE-EEECCEEEEcCEEEECCCHHHHHhccccCCCCCC-HHHHHHHHcCC
Confidence 77764 446999999999999874 365 666778899999999999999984 32223331 23346789999
Q ss_pred ceeEEEEEEEeccCCCCCCCCcceeecC---C-C--ccccceehhhhcccccCCCCcEE-EEEee-cCCCCCCCCHHHHH
Q 016211 244 SIDVVSVKLWFDKKVTVPNVSNACSGFG---D-S--LAWTFFDLNKIYDEHKDDSATVI-QADFY-HANELMPLKDDQVV 315 (393)
Q Consensus 244 ~~~~~~v~l~~~~~~~~~~~~~~~~~~~---~-~--~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~~~~~~~~~~~e~~ 315 (393)
+.++.+|++.|++++|.... . .++.. . . ...++++.+. .+++.++ +++.. .+..+..+++++++
T Consensus 432 yG~v~KV~L~F~~~FW~~~~-~-~fG~l~~~~~~~g~~~~~~~~~~------~~ggpvLvafv~G~~A~~le~lsdeeii 503 (738)
T PLN02529 432 FGLLNKVAMVFPSVFWGEEL-D-TFGCLNESSNKRGEFFLFYGYHT------VSGGPALVALVAGEAAQRFENTDPSTLL 503 (738)
T ss_pred CceeEEEEEEeCCccccCCC-C-ceEEEeccCCCCceEEEEecCCC------CCCCCEEEEEECchhhHHHhcCCHHHHH
Confidence 99999999999999884211 1 22211 1 1 1111122111 1233343 33222 34556778999999
Q ss_pred HHHHHHHhhhhcC--CCCCceeeeEEeecCCC-----ccc-cCCCCcC-CCCCCCCC-CCceEEecccccc-----CCCc
Q 016211 316 AKAVSYLSKCIKD--FSTATVMDHKIRRFPKS-----LTH-FFPGSYK-YMMRGFTS-FPNLFMAGDWITT-----RHGS 380 (393)
Q Consensus 316 ~~~~~~l~~~~p~--~~~~~~~~~~~~~~~~a-----~~~-~~~g~~~-~~~~~~~~-~~~L~laGd~~~~-----~~ga 380 (393)
+.++++|+++|+. .....++.+.+++|... .|. ..||... .......| .++|||||++|+. +|||
T Consensus 504 ~~vl~~L~~ifgp~~~~vp~Pi~~v~t~W~~DP~s~GsYS~~~~g~~~~d~~~La~pv~grL~FAGEaTs~~~pgtVeGA 583 (738)
T PLN02529 504 HRVLSVLRGIYNPKGINVPDPIQTICTRWGSDPLSYGSYSHVRVQSSGSDYDILAESVSGRLFFAGEATTRQYPATMHGA 583 (738)
T ss_pred HHHHHHHHHHhCccccccCCceEEEEccCCcCCCCCCCcccCCCCCchhHHHHHhCCCCCCEEEEEHHHhCCCCeEeHHH
Confidence 9999999999962 21125667777888632 122 2333221 11122344 4789999999986 7799
Q ss_pred -cccchhcc
Q 016211 381 -WSQVTFKL 388 (393)
Q Consensus 381 -~s~~~a~~ 388 (393)
.||+|||+
T Consensus 584 i~SG~RAA~ 592 (738)
T PLN02529 584 FLSGLREAS 592 (738)
T ss_pred HHHHHHHHH
Confidence 79999985
No 17
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.84 E-value=5.9e-19 Score=172.17 Aligned_cols=282 Identities=11% Similarity=-0.002 Sum_probs=175.1
Q ss_pred ccCccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHhhccCCcceEEecCCchhHhHHHHHHHH
Q 016211 93 YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSM 172 (393)
Q Consensus 93 ~d~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~l~~~l~~~l 172 (393)
.+..|+.+|++++..++ .++.++.. ....++.++++.++.+.+..+..+ .....++.||++. ++++|.+.+
T Consensus 159 ~~~~s~~~~~~~~~~~~-~l~~~l~~-~~~~~g~~p~~~~~~~~l~~~~~~------~~g~~~~~gG~~~-l~~al~~~~ 229 (502)
T TIGR02734 159 LAWRSLYSKVARFFSDE-RLRQAFSF-HALFLGGNPFRTPSIYALISALER------EWGVWFPRGGTGA-LVAAMAKLA 229 (502)
T ss_pred cCcCCHHHHHHhhcCCH-HHHHHhcc-cceeeccCcccchHHHHHHHHHHh------hceEEEcCCCHHH-HHHHHHHHH
Confidence 46789999999874444 45666653 334566788888876544322221 1234678899987 889999999
Q ss_pred HHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhhHH-HHhhcccccCcHHHHhhccCCc-eeEEE
Q 016211 173 RTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQ-ELIKNSILCNREEFLKVLNLAS-IDVVS 249 (393)
Q Consensus 173 ~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~~~-~Ll~~~~~~~~~~~~~~~~~~~-~~~~~ 249 (393)
++.|++|+++++|++|..++ +++++|++ +|+++.||+||+|+++..+. .|++....+ ....+.++++++ .+.++
T Consensus 230 ~~~G~~i~~~~~V~~i~~~~--~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~s~s~~~ 306 (502)
T TIGR02734 230 EDLGGELRLNAEVIRIETEG--GRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRR-RYPAARLSRKRPSPSLFV 306 (502)
T ss_pred HHCCCEEEECCeEEEEEeeC--CEEEEEEECCCCEEECCEEEECCcHHHHHHHhcCccccc-cccccccccCCcCCeeeE
Confidence 99999999999999999876 56777877 57789999999999987654 566553221 111134455553 46788
Q ss_pred EEEEec---cCCCCCCCCcceeecCC----------C----cccccee-hhhhcccccCCCCcEEEE-EeecCC-----C
Q 016211 250 VKLWFD---KKVTVPNVSNACSGFGD----------S----LAWTFFD-LNKIYDEHKDDSATVIQA-DFYHAN-----E 305 (393)
Q Consensus 250 v~l~~~---~~~~~~~~~~~~~~~~~----------~----~~~~~~~-~~~~~~~~~~~~~~l~~~-~~~~~~-----~ 305 (393)
++++++ +++.....++.++..+. + -..++.. .+...+..++++.+.+.+ +..+.+ +
T Consensus 307 ~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~dp~~aP~G~~~~~~~~~~~~~~~~~~~ 386 (502)
T TIGR02734 307 LYFGLLGVDGHWPQLAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPGCENLYVLAPVPHLGTADVD 386 (502)
T ss_pred EEEeeccccCcCCCcCceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCCCCCCCccEEEEEeCCCCCCCCCC
Confidence 899998 33321111222221110 0 0011111 123334445455555543 222321 2
Q ss_pred CCCCCHHHHHHHHHHHHhhh-hcCCCCCceeeeEEe----------ecCCCccccCCC---CcCCCCC-CCCCCCceEEe
Q 016211 306 LMPLKDDQVVAKAVSYLSKC-IKDFSTATVMDHKIR----------RFPKSLTHFFPG---SYKYMMR-GFTSFPNLFMA 370 (393)
Q Consensus 306 ~~~~~~~e~~~~~~~~l~~~-~p~~~~~~~~~~~~~----------~~~~a~~~~~~g---~~~~~~~-~~~~~~~L~la 370 (393)
|. ..++++.+.+++.+++. +|++++ .++...+. .+.++.+...+. ....+|. ..++++|||+|
T Consensus 387 ~~-~~k~~~~~~il~~l~~~~~p~l~~-~i~~~~~~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~rp~~~~t~i~gLyl~ 464 (502)
T TIGR02734 387 WS-VEGPRYRDRILAYLEERAIPGLRD-RIVVERTFTPADFRDRYNAWLGSAFSLEHTLTQSAWFRPHNRDRKIDNLYLV 464 (502)
T ss_pred cH-HHHHHHHHHHHHHHHHhcCCChhH-heEEEEEcCHHHHHHhcCCCCccccchhhchhhcccCCCCCCCCCCCCEEEe
Confidence 32 23677899999999998 999975 56655432 123444443322 1224554 35789999999
Q ss_pred ccccccCCCc----cccchhcc
Q 016211 371 GDWITTRHGS----WSQVTFKL 388 (393)
Q Consensus 371 Gd~~~~~~ga----~s~~~a~~ 388 (393)
|++++++.|- +||..||+
T Consensus 465 G~~~~pG~Gv~g~~~sg~~~a~ 486 (502)
T TIGR02734 465 GAGTHPGAGVPGVLGSAKATAK 486 (502)
T ss_pred CCCCCCCCCHHHHHHHHHHHHH
Confidence 9999986555 58877764
No 18
>PLN02676 polyamine oxidase
Probab=99.82 E-value=2.1e-19 Score=172.86 Aligned_cols=282 Identities=12% Similarity=0.081 Sum_probs=171.5
Q ss_pred cccCccH--HHHHHHcC-CCHHHHHHHHHHHHH-hhcCCCcccccHHHHHHHHHHHHhhccCCcceEEe-cCCchhHhHH
Q 016211 92 KYDSITA--RELFKQFG-CSERLYRNVIGPLVQ-VGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWC-RGTLREKIFE 166 (393)
Q Consensus 92 ~~d~~s~--~~~l~~~~-~~~~~~~~~~~p~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~gG~~~~l~~ 166 (393)
..+++|+ .+++.+.. .... .....-+.. ..++.+++++|+..+... ..+ ...++...... +||++. +++
T Consensus 155 ~~~~~s~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~S~~~~~~~-~~~--~~~g~~~~~~~~~~G~~~-l~~ 228 (487)
T PLN02676 155 KAVDISILTAQRLFGQVPKTPL--EMVIDYYNYDYEFAEPPRVTSLKNTEPN-PTF--VDFGEDEYFVADPRGYES-LVY 228 (487)
T ss_pred CCCCccHHHHHHHHhhCCCCHH--HHHHHHHhccceeccCccccchhhcCcc-ccc--ccCCCceEEeecCCCHHH-HHH
Confidence 3567887 55565432 1221 122222222 226778899988765321 111 11112222222 589988 788
Q ss_pred HHHHHHHHc------CCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhhHHH--HhhcccccCcHHHH
Q 016211 167 PWMDSMRTR------GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQE--LIKNSILCNREEFL 237 (393)
Q Consensus 167 ~l~~~l~~~------G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~~~~--Ll~~~~~~~~~~~~ 237 (393)
.|++.+.+. +.+|++|++|++|..+++ .|. |.+ +|+++.||+||+|+|+.+++. +...++++ ....+
T Consensus 229 ~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~--gV~-V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP-~~k~~ 304 (487)
T PLN02676 229 YLAEQFLSTKSGKITDPRLKLNKVVREISYSKN--GVT-VKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLP-DWKIE 304 (487)
T ss_pred HHHhhcccccccccCCCceecCCEeeEEEEcCC--cEE-EEECCCCEEEeCEEEEccChHHhccCceEEeCCCC-HHHHH
Confidence 888876432 257999999999999874 365 666 577899999999999999985 44444442 22235
Q ss_pred hhccCCceeEEEEEEEeccCCCCCCCCcceeecCC-Ccc-ccceehhhhcccccCCCCcEEEEEee--cCCCCCCCCHHH
Q 016211 238 KVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGD-SLA-WTFFDLNKIYDEHKDDSATVIQADFY--HANELMPLKDDQ 313 (393)
Q Consensus 238 ~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~e 313 (393)
.++++.+..+.++.+.|++++|........+.... ... ..++.. .... .++..++.+.+. .+..+..+++++
T Consensus 305 ai~~l~~g~~~Kv~l~f~~~FW~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~l~~~~~g~~a~~~~~~s~e~ 380 (487)
T PLN02676 305 AIYQFDMAVYTKIFLKFPYKFWPSGPGTEFFLYAHERRGYYPFWQH--LENE--YPGSNVLFVTVTDEESRRIEQQPDSE 380 (487)
T ss_pred HHHhCCceeeEEEEEEeCCCCCCCCCCceeeeeeccccccchhhhh--cccC--CCCCCEEEEEechHHHHHHHhCCHHH
Confidence 67888888999999999999994311111111110 000 001110 0000 123334433332 234566789999
Q ss_pred HHHHHHHHHhhhhcCCCCCceeeeEEeecC------CCccccCCCCcC-CCCCCCCCCCceEEecccccc-----CCCc-
Q 016211 314 VVAKAVSYLSKCIKDFSTATVMDHKIRRFP------KSLTHFFPGSYK-YMMRGFTSFPNLFMAGDWITT-----RHGS- 380 (393)
Q Consensus 314 ~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~------~a~~~~~~g~~~-~~~~~~~~~~~L~laGd~~~~-----~~ga- 380 (393)
+++.+++.|+++||... ..++....++|. +++..+.||... ..+..++|+++|||||++|+. +|||
T Consensus 381 ~~~~vl~~L~~~~g~~~-~~p~~~~~~~W~~dp~s~Gsys~~~pG~~~~~~~~L~~P~gri~FAGe~ts~~~~g~~eGA~ 459 (487)
T PLN02676 381 TKAEIMEVLRKMFGPNI-PEATDILVPRWWSNRFFKGSYSNWPIGVSRYEFDQIRAPVGRVYFTGEHTSEKYNGYVHGAY 459 (487)
T ss_pred HHHHHHHHHHHHhCCCC-CCcceEEecccCCCCCCCcccCCCCCCCChhHHHHHhCCCCceEEeccccccccccchHHHH
Confidence 99999999999997422 256666667775 222334566543 334456788999999999985 7899
Q ss_pred cccchhcc
Q 016211 381 WSQVTFKL 388 (393)
Q Consensus 381 ~s~~~a~~ 388 (393)
.||+|||+
T Consensus 460 ~SG~RaA~ 467 (487)
T PLN02676 460 LAGIDTAN 467 (487)
T ss_pred HHHHHHHH
Confidence 79999984
No 19
>PLN02568 polyamine oxidase
Probab=99.81 E-value=5.5e-19 Score=171.20 Aligned_cols=282 Identities=13% Similarity=0.074 Sum_probs=178.0
Q ss_pred CccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHhh-----------cc-------CCcceEEe
Q 016211 95 SITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILA-----------HQ-------KNFDLVWC 156 (393)
Q Consensus 95 ~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~-----------~~-------~~~~~~~~ 156 (393)
+.|+.+|++++ ++. .++.+.+|+..+.++.++++.+...++..+..+... .. .......+
T Consensus 160 ~~Sl~~fl~~~-l~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ls~ls~~~~~~~~~~~g~~~~i 237 (539)
T PLN02568 160 GGSVGSFLRRG-LDA-YWDSVSADEQIKGYGGWSRKLLEEAIFTMHENTQRTYTSADDLSTLDLAAESEYRMFPGEEITI 237 (539)
T ss_pred CCcHHHHHHHH-HHH-HHhhcccchhhccccchhHHHHHHHHHHHHHHhhccccccccHhhccccccCcceecCCCeEEE
Confidence 45999999984 554 566777888888888888877776665555442100 00 01123456
Q ss_pred cCCchhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhhHHH------Hhhccc
Q 016211 157 RGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQE------LIKNSI 229 (393)
Q Consensus 157 ~gG~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~~~~------Ll~~~~ 229 (393)
+||+++ |++.|++.+. +.+|++|++|++|..++ +.+. |++ +|+++.||+||+|+|+.++++ +...++
T Consensus 238 ~gG~~~-Li~~La~~L~--~~~I~ln~~V~~I~~~~--~~v~-V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P~ 311 (539)
T PLN02568 238 AKGYLS-VIEALASVLP--PGTIQLGRKVTRIEWQD--EPVK-LHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPP 311 (539)
T ss_pred CCcHHH-HHHHHHhhCC--CCEEEeCCeEEEEEEeC--CeEE-EEEcCCCEEEcCEEEEcCCHHHHhhccccccceecCC
Confidence 799988 7788887764 45799999999999987 3465 555 677899999999999999985 223233
Q ss_pred ccCcHHHHhhccCCceeEEEEEEEeccCCCCCCCCcc-------eeecCCC-------ccccceehhhhcccccCCCCcE
Q 016211 230 LCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNA-------CSGFGDS-------LAWTFFDLNKIYDEHKDDSATV 295 (393)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~-------~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l 295 (393)
++ ....+.++++.+..+.++++.|++++|.. +... ++..+.+ ..+++.......+ ...+..+
T Consensus 312 LP-~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v 387 (539)
T PLN02568 312 LP-DFKTDAISRLGFGVVNKLFVELSPRPDGS-PEDVAKFPFLQMAFHRSDSEARHDKIPWWMRRTASICP--IHKNSSV 387 (539)
T ss_pred CC-HHHHHHHHhcCCceeeEEEEEecCCCCCc-ccccccccceeeeecccchhhhcccccchhhccccccc--cCCCCCE
Confidence 31 22346788999989999999999998731 1100 0000000 0000000000001 0112334
Q ss_pred EEEEee--cCCCCCCCCHHHHHHHHHHHHhhhhcCCC---------------------CCceeeeEEeecC------CCc
Q 016211 296 IQADFY--HANELMPLKDDQVVAKAVSYLSKCIKDFS---------------------TATVMDHKIRRFP------KSL 346 (393)
Q Consensus 296 ~~~~~~--~~~~~~~~~~~e~~~~~~~~l~~~~p~~~---------------------~~~~~~~~~~~~~------~a~ 346 (393)
+.+.+. .+..+..++++++++.+++.|.++|+.-. ..+++.+.+++|. +++
T Consensus 388 L~~~~~G~~A~~~e~l~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~dp~~~GsY 467 (539)
T PLN02568 388 LLSWFAGKEALELEKLSDEEIIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDPLFLGSY 467 (539)
T ss_pred EEEEeccHHHHHHHcCCHHHHHHHHHHHHHHHcCCcccCcccccccccccccccccccCCCCceEEeCCCCCCCccCCcc
Confidence 433333 24566778999999999999999996321 1246677777775 222
Q ss_pred cccCCCCcC-CCCCCCCCC-------------CceEEecccccc-----CCCc-cccchhcc
Q 016211 347 THFFPGSYK-YMMRGFTSF-------------PNLFMAGDWITT-----RHGS-WSQVTFKL 388 (393)
Q Consensus 347 ~~~~~g~~~-~~~~~~~~~-------------~~L~laGd~~~~-----~~ga-~s~~~a~~ 388 (393)
....||... .+...+.|+ ++|||||..|+. +||| .||+|||.
T Consensus 468 s~~~~g~~~~~~~~La~P~~~~~~~~~~~~~~~~l~FAGEat~~~~~~Tv~GA~~SG~RaA~ 529 (539)
T PLN02568 468 SYVAVGSSGDDLDRMAEPLPRISDHDQAGGPPLQLLFAGEATHRTHYSTTHGAYFSGLREAN 529 (539)
T ss_pred CCCcCCCChhHHHHHhCccccccccccccCCCccEEEeecccCCCccchHHHHHHHHHHHHH
Confidence 223456532 122233444 379999999985 8999 79999985
No 20
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.81 E-value=9.6e-18 Score=162.99 Aligned_cols=283 Identities=14% Similarity=0.093 Sum_probs=172.5
Q ss_pred cCccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHhhccCCcceEEecCCchhHhHHHHHHHHH
Q 016211 94 DSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMR 173 (393)
Q Consensus 94 d~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~l~~~l~~~l~ 173 (393)
...|+.++++++..++. ++.++...+......++.+.++..+...+... ......++.||++. ++++|.+.++
T Consensus 168 ~~~s~~~~~~~~~~~~~-l~~~l~~~~~~~~~~p~~~~p~~~~~~~~~~~-----~~~g~~~~~gG~~~-l~~~L~~~~~ 240 (493)
T TIGR02730 168 LPQNAGDIARRYIRDPG-LLKFIDIECFCWSVVPADQTPMINAGMVFSDR-----HYGGINYPKGGVGQ-IAESLVKGLE 240 (493)
T ss_pred hhccHHHHHHHhcCCHH-HHHHHHHHHHhccCCCcccchhhhHHHhhccc-----ccceEecCCChHHH-HHHHHHHHHH
Confidence 35899999999756665 45677654443333345677765554433221 11245778999988 8899999999
Q ss_pred HcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhh-HHHHhhcccccCcHHHHhhccCCc-eeEEEE
Q 016211 174 TRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELIKNSILCNREEFLKVLNLAS-IDVVSV 250 (393)
Q Consensus 174 ~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~-~~~Ll~~~~~~~~~~~~~~~~~~~-~~~~~v 250 (393)
++|++|+++++|++|..++ +++.+|++ +|++++||+||+|++++. +.+|++....+ ......++++++ .+.+++
T Consensus 241 ~~G~~i~~~~~V~~I~~~~--~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~-~~~~~~~~~~~~s~s~~~~ 317 (493)
T TIGR02730 241 KHGGQIRYRARVTKIILEN--GKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLKAENLP-KKEKNWQRNYVKSPSFLSL 317 (493)
T ss_pred HCCCEEEeCCeeeEEEecC--CcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCCccccc-hhhHHHHhhccCCCceEEE
Confidence 9999999999999999876 56888888 577899999999987765 45788764321 122223345553 357889
Q ss_pred EEEeccCCCC--CCCCcceee-c---CCCcccccee-hhhhcccccCCCCcEEEEEee-cCCCCCCC-------CHHHHH
Q 016211 251 KLWFDKKVTV--PNVSNACSG-F---GDSLAWTFFD-LNKIYDEHKDDSATVIQADFY-HANELMPL-------KDDQVV 315 (393)
Q Consensus 251 ~l~~~~~~~~--~~~~~~~~~-~---~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~-------~~~e~~ 315 (393)
+++++++... ...++.++. . ...-..++.. .+...+..++++.+++.+... +...|.++ .++++.
T Consensus 318 ~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~~~~~~w~~~~~~~y~~~k~~~~ 397 (493)
T TIGR02730 318 HLGVKADVLPPGTECHHILLEDWTNLEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTPSSMEDWQGLSPKDYEAKKEADA 397 (493)
T ss_pred EEEecCccCCCCCCccEEecchhhccCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecCCChhhccCCCcHHHHHHHHHHH
Confidence 9999885421 111222211 0 0000111111 123334445455566543221 22333221 256688
Q ss_pred HHHHHHHhhhhcCCCCCceeeeEEeecC----------CCccccCCCC---cCCC-CCCCCCCCceEEeccccccCCCc-
Q 016211 316 AKAVSYLSKCIKDFSTATVMDHKIRRFP----------KSLTHFFPGS---YKYM-MRGFTSFPNLFMAGDWITTRHGS- 380 (393)
Q Consensus 316 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~----------~a~~~~~~g~---~~~~-~~~~~~~~~L~laGd~~~~~~ga- 380 (393)
+.+++.+++++|++++ .++...+. .| ++.+...+.. ...+ |..+|+++|||+||++++++.|.
T Consensus 398 ~~il~~l~~~~p~l~~-~I~~~~~~-TP~t~~r~~~~~~G~~G~~~~~~~~~~~~~~~~~t~i~gLyl~G~~~~pG~Gv~ 475 (493)
T TIGR02730 398 ERIIDRLEKIFPGLDS-AIDYKEVG-TPRTHRRFLGRDSGTYGPIPRRTLPGLLPMPFNRTAIPGLYCVGDSCFPGQGLN 475 (493)
T ss_pred HHHHHHHHHHCCChhh-cEEEEEee-CchhHHHHhCCCCcccCCcccccccccccCCCCCCCCCCeEEecCcCCCCCCHH
Confidence 9999999999999875 56554432 22 2222211111 0111 34578999999999999986554
Q ss_pred ---cccchhcc
Q 016211 381 ---WSQVTFKL 388 (393)
Q Consensus 381 ---~s~~~a~~ 388 (393)
+||.-||+
T Consensus 476 g~~~sG~~~a~ 486 (493)
T TIGR02730 476 AVAFSGFACAH 486 (493)
T ss_pred HHHHHHHHHHH
Confidence 57877664
No 21
>PLN03000 amine oxidase
Probab=99.81 E-value=1e-18 Score=173.36 Aligned_cols=218 Identities=14% Similarity=0.159 Sum_probs=146.0
Q ss_pred eEEecCCchhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChhhHH--HHhhcccc
Q 016211 153 LVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ--ELIKNSIL 230 (393)
Q Consensus 153 ~~~~~gG~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~~~~--~Ll~~~~~ 230 (393)
...++||++. ++++|++.+ .|++|++|++|.++++ .|. |+++++++.||+||+|+|+.+++ .+...+++
T Consensus 373 ~~~v~GG~~~-LieaLa~~L-----~I~Ln~~Vt~I~~~~d--gV~-V~~~~~~~~AD~VIvTVPlgVLk~~~I~F~PpL 443 (881)
T PLN03000 373 HCFLPGGNGR-LVQALAENV-----PILYEKTVQTIRYGSN--GVK-VIAGNQVYEGDMVLCTVPLGVLKNGSIKFVPEL 443 (881)
T ss_pred eEEeCCCHHH-HHHHHHhhC-----CcccCCcEEEEEECCC--eEE-EEECCcEEEeceEEEcCCHHHHhhCceeeCCCC
Confidence 4557799998 778888765 4999999999999874 465 66666789999999999999998 33333333
Q ss_pred cCcHHHHhhccCCceeEEEEEEEeccCCCCCCCCcceeecC---C---CccccceehhhhcccccCCCCcEEEEEee--c
Q 016211 231 CNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFG---D---SLAWTFFDLNKIYDEHKDDSATVIQADFY--H 302 (393)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~ 302 (393)
+ ....+.++++.+..+.+|++.|++++|... .. .+|.- . ....++++.+ + ..++.++.+.+. .
T Consensus 444 P-~~K~~AI~rL~~G~l~KViL~Fd~~FW~~d-~~-~FG~l~~~~~~rg~~~~f~s~s---p---~~G~pVLvafv~Gd~ 514 (881)
T PLN03000 444 P-QRKLDCIKRLGFGLLNKVAMLFPYVFWSTD-LD-TFGHLTEDPNYRGEFFLFYSYA---P---VAGGPLLIALVAGEA 514 (881)
T ss_pred C-HHHHHHHHcCCCcceEEEEEEeCCccccCC-CC-ceeEEecCCCCCceeEEEeCCC---C---CCCCcEEEEEecCch
Confidence 1 223367899999999999999999998432 11 23221 1 1111122211 1 023334433333 3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhhhcC--CCCCceeeeEEeecCC------CccccCCCCcC-CCCCCCCCC--CceEEec
Q 016211 303 ANELMPLKDDQVVAKAVSYLSKCIKD--FSTATVMDHKIRRFPK------SLTHFFPGSYK-YMMRGFTSF--PNLFMAG 371 (393)
Q Consensus 303 ~~~~~~~~~~e~~~~~~~~l~~~~p~--~~~~~~~~~~~~~~~~------a~~~~~~g~~~-~~~~~~~~~--~~L~laG 371 (393)
+..+..++++++++.++++|+++|+. ..-.+++.+.+++|.. ++..+.||... .......|+ ++|||||
T Consensus 515 A~~le~lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~~DPysrGSYS~~~pG~~~~~~d~LaePv~~GRIfFAG 594 (881)
T PLN03000 515 AHKFETMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAG 594 (881)
T ss_pred hHHhhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCCCCCCCccccCCCCCCchHHHHHHhCcCCCCcEEEee
Confidence 45677889999999999999999962 2112566777888862 22234456432 223334565 5899999
Q ss_pred ccccc-----CCCc-cccchhcc
Q 016211 372 DWITT-----RHGS-WSQVTFKL 388 (393)
Q Consensus 372 d~~~~-----~~ga-~s~~~a~~ 388 (393)
++|+. +||| .||+|||.
T Consensus 595 EaTs~~~~GTVhGAieSGlRAA~ 617 (881)
T PLN03000 595 EATTRRYPATMHGAFVTGLREAA 617 (881)
T ss_pred hHHhCCCCeeHHHHHHHHHHHHH
Confidence 99985 8899 79999984
No 22
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.80 E-value=1.2e-18 Score=155.68 Aligned_cols=285 Identities=11% Similarity=0.112 Sum_probs=193.4
Q ss_pred cccCccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHh--------------hccC--------
Q 016211 92 KYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIIL--------------AHQK-------- 149 (393)
Q Consensus 92 ~~d~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~--------------~~~~-------- 149 (393)
...++|+.+|++|+ +++++.+++++|+++++|+.|++++|+...+..+...-. +...
T Consensus 152 ~~~dESV~sF~~Rr-fG~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~ 230 (491)
T KOG1276|consen 152 PSADESVESFARRR-FGKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETAL 230 (491)
T ss_pred CCccccHHHHHHHh-hhHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchh
Confidence 35789999999995 899999999999999999999999999977655543210 0000
Q ss_pred -------CcceEEecCCchhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe---CC-eEEecCEEEEecCh
Q 016211 150 -------NFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK-ETYSAGAVVLAVGI 218 (393)
Q Consensus 150 -------~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g-~~~~ad~VI~a~p~ 218 (393)
.....-.+||+.. +.+++.+.|.+..+.|.++-++..+..... |++. +.+ ++ ..+..+++..++|+
T Consensus 231 ~~~~~~e~~~~~sl~gGle~-lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~-~~~~-~tl~~~~~~~~~~~~~~~~t~~~ 307 (491)
T KOG1276|consen 231 SAQAKKEKWTMFSLKGGLET-LPKALRKSLGEREVSISLGLKLSGNSKSRS-GNWS-LTLVDHSGTQRVVVSYDAATLPA 307 (491)
T ss_pred hhhhcccccchhhhhhhHhH-hHHHHHHHhcccchhhhccccccccccccc-CCce-eEeEcCCCceeeeccccccccch
Confidence 0012336799988 899999999988899999999999987654 3343 444 33 33455666679999
Q ss_pred hhHHHHhhcccccCcHHHHhhccCCceeEEEEEEEeccC-CCCCC-CCcceee--c--CCCccccceehhhhcccccCCC
Q 016211 219 STLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKK-VTVPN-VSNACSG--F--GDSLAWTFFDLNKIYDEHKDDS 292 (393)
Q Consensus 219 ~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~-~~~~~-~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~ 292 (393)
..+.++++... ......+.++.|.++..|.+.|.++ ...+. ..+.+.. . ...+..++||... .+...+.+
T Consensus 308 ~k~a~ll~~~~---~sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG~ifdS~~-Fp~~~~s~ 383 (491)
T KOG1276|consen 308 VKLAKLLRGLQ---NSLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLGTIFDSML-FPDRSPSP 383 (491)
T ss_pred HHhhhhccccc---hhhhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCceeEEEeeccc-CCCCCCCc
Confidence 99999998863 2333577889999999999999775 22221 1122221 0 1123456888443 33332211
Q ss_pred CcEEEEEee--cCCC--CCCCCHHHHHHHHHHHHhhhhcCCCCCceeeeEEeecCCCccccCCCCcCCCCCC-----CCC
Q 016211 293 ATVIQADFY--HANE--LMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRG-----FTS 363 (393)
Q Consensus 293 ~~l~~~~~~--~~~~--~~~~~~~e~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~~-----~~~ 363 (393)
.+.++++ .... ....+.+|+++.+.++|.+++..- + ++....++-|+.++|+|..|+....... ..+
T Consensus 384 --~vtvm~gg~~~~n~~~~~~S~ee~~~~v~~alq~~Lgi~-~-~P~~~~v~l~~~ciPqy~vGh~~~le~a~~~l~~~~ 459 (491)
T KOG1276|consen 384 --KVTVMMGGGGSTNTSLAVPSPEELVNAVTSALQKMLGIS-N-KPVSVNVHLWKNCIPQYTVGHDDVLEAAKSMLTDSP 459 (491)
T ss_pred --eEEEEecccccccCcCCCCCHHHHHHHHHHHHHHHhCCC-C-CcccccceehhhcccceecchHHHHHHHHHHHHhCC
Confidence 3333332 2222 235689999999999999999643 3 5777777889999999999986543221 123
Q ss_pred CCceEEecccccc--CCCc-cccchhcc
Q 016211 364 FPNLFMAGDWITT--RHGS-WSQVTFKL 388 (393)
Q Consensus 364 ~~~L~laGd~~~~--~~ga-~s~~~a~~ 388 (393)
-.+|++||.|... +.=+ .||-++|.
T Consensus 460 g~~l~l~G~~y~Gv~vgdcI~sg~~~A~ 487 (491)
T KOG1276|consen 460 GLGLFLGGNHYGGVSVGDCIESGRKTAV 487 (491)
T ss_pred CCceEeeccccCCCChhHHHHhhHHHHH
Confidence 3589999999986 2222 56766553
No 23
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.80 E-value=3.7e-18 Score=169.54 Aligned_cols=219 Identities=16% Similarity=0.144 Sum_probs=144.8
Q ss_pred ceEEecCCchhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChhhHHH--Hhhccc
Q 016211 152 DLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE--LIKNSI 229 (393)
Q Consensus 152 ~~~~~~gG~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~~~~~--Ll~~~~ 229 (393)
....+.||++. |+++|++.+ .|++|++|++|..+++ .|. |.++|+++.||+||+|+|+.++++ +...++
T Consensus 428 ~~~~v~GG~~~-Li~aLa~~L-----~I~ln~~V~~I~~~~d--gV~-V~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~ 498 (808)
T PLN02328 428 DHCFIPGGNDT-FVRELAKDL-----PIFYERTVESIRYGVD--GVI-VYAGGQEFHGDMVLCTVPLGVLKKGSIEFYPE 498 (808)
T ss_pred eEEEECCcHHH-HHHHHHhhC-----CcccCCeeEEEEEcCC--eEE-EEeCCeEEEcCEEEECCCHHHHhhcccccCCC
Confidence 35567799998 788887655 4999999999999874 354 556788999999999999999884 322222
Q ss_pred ccCcHHHHhhccCCceeEEEEEEEeccCCCCCCCCcceeec---CCCc-c--ccceehhhhcccccCCCCcEEEEEee--
Q 016211 230 LCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGF---GDSL-A--WTFFDLNKIYDEHKDDSATVIQADFY-- 301 (393)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~---~~~~-~--~~~~~~~~~~~~~~~~~~~l~~~~~~-- 301 (393)
++ ....+.++++.|.++.+|.+.|++++|... .+ .+|. +... + .++++.+. .+++.++.+.+.
T Consensus 499 LP-~~K~~AI~~l~yG~~~KV~L~F~~~FW~~~-~d-~fG~l~~d~s~rG~~~lf~s~s~------~~G~~vLvafv~G~ 569 (808)
T PLN02328 499 LP-QRKKDAIQRLGYGLLNKVALLFPYNFWGGE-ID-TFGHLTEDPSMRGEFFLFYSYSS------VSGGPLLIALVAGD 569 (808)
T ss_pred CC-HHHHHHHHcCCCcceEEEEEEeCCccccCC-CC-ceEEEeecCCCCceEEEEecCCC------CCCCcEEEEEecCh
Confidence 21 233357899999999999999999998421 11 2221 1111 1 11222111 123444443333
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhhhhcC--CCCCceeeeEEeecCCCcc------ccCCCCcC-CCCCCCCCC--CceEEe
Q 016211 302 HANELMPLKDDQVVAKAVSYLSKCIKD--FSTATVMDHKIRRFPKSLT------HFFPGSYK-YMMRGFTSF--PNLFMA 370 (393)
Q Consensus 302 ~~~~~~~~~~~e~~~~~~~~l~~~~p~--~~~~~~~~~~~~~~~~a~~------~~~~g~~~-~~~~~~~~~--~~L~la 370 (393)
.+.++.+++++++++.++++|+++|+. .....++...+++|....+ .+.+|... ..+....|+ ++||||
T Consensus 570 ~A~~~e~lsdeE~v~~vL~~Lr~ifgp~~~~vp~P~~~~vtrW~~DP~s~GSYS~~~pG~~~~~~~~LaePv~~GRL~FA 649 (808)
T PLN02328 570 AAVKFETLSPVESVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGKDCFTYGSYSYVAVGSSGDDYDILAESVGDGRVFFA 649 (808)
T ss_pred hhHHHhcCCHHHHHHHHHHHHHHHhCcccccccCcceEEEecCCCCCCcCCCCCCCCCCCchhHHHHHhccCCCCCEEEE
Confidence 234566789999999999999999963 1112567778888873322 23455432 122333454 589999
Q ss_pred cccccc-----CCCc-cccchhcc
Q 016211 371 GDWITT-----RHGS-WSQVTFKL 388 (393)
Q Consensus 371 Gd~~~~-----~~ga-~s~~~a~~ 388 (393)
|++|+. +||| .||+|||+
T Consensus 650 GEaTs~~~~GtVhGAi~SGlRAA~ 673 (808)
T PLN02328 650 GEATNKQYPATMHGAFLSGMREAA 673 (808)
T ss_pred EhhHhCCCCeEhHHHHHHHHHHHH
Confidence 999984 7899 79999985
No 24
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.80 E-value=1.3e-19 Score=173.97 Aligned_cols=286 Identities=21% Similarity=0.157 Sum_probs=169.2
Q ss_pred hcccCccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHhh----ccCCcceEEecCCchhHhHH
Q 016211 91 RKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILA----HQKNFDLVWCRGTLREKIFE 166 (393)
Q Consensus 91 ~~~d~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~----~~~~~~~~~~~gG~~~~l~~ 166 (393)
.....+++.+|+....+.+.....++.++.....+..+...++......+...... ...........|++..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---- 213 (450)
T PF01593_consen 138 LEDDLESFLEFLDSQSFSEIFRESLFRPFFFGAFGFLPDESSAALALLSFPHFDLQDNGGYFPFGGLTVGMGGLSL---- 213 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHHHHHCHHHHHHHHTTSSTEEEETTTTHH----
T ss_pred hhhhhhhhhhhhhhhhhhhhhHHHHHHhhhhhhhccccchhhhhHHHhhhhhcccccccccccccceeecccchhH----
Confidence 33456788888876545555444355566666655566666666333333221100 1112223334455443
Q ss_pred HHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChhhHHH--HhhcccccCcHHHHhhccCCc
Q 016211 167 PWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE--LIKNSILCNREEFLKVLNLAS 244 (393)
Q Consensus 167 ~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~~~~~--Ll~~~~~~~~~~~~~~~~~~~ 244 (393)
.+...+...|++|++|++|++|+.++ +++..+..+|++++||+||+|+|+..+.+ +.+..+ ......++++.+
T Consensus 214 ~~~~~~~~~g~~i~l~~~V~~I~~~~--~~v~v~~~~g~~~~ad~VI~a~p~~~l~~i~~~p~l~---~~~~~a~~~~~~ 288 (450)
T PF01593_consen 214 ALALAAEELGGEIRLNTPVTRIERED--GGVTVTTEDGETIEADAVISAVPPSVLKNILLLPPLP---EDKRRAIENLPY 288 (450)
T ss_dssp HHHHHHHHHGGGEESSEEEEEEEEES--SEEEEEETTSSEEEESEEEE-S-HHHHHTSEEESTSH---HHHHHHHHTEEE
T ss_pred HHHHHHhhcCceeecCCcceeccccc--cccccccccceEEecceeeecCchhhhhhhhhccccc---cccccccccccc
Confidence 34444455688999999999999998 56764444788999999999999999985 333321 112345678888
Q ss_pred eeEEEEEEEeccCCCCCC-CCcceeecCC-CccccceehhhhcccccCCCCcEEEEEe-ec-CCCCCCCCHHHHHHHHHH
Q 016211 245 IDVVSVKLWFDKKVTVPN-VSNACSGFGD-SLAWTFFDLNKIYDEHKDDSATVIQADF-YH-ANELMPLKDDQVVAKAVS 320 (393)
Q Consensus 245 ~~~~~v~l~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~-~~~~~~~~~~e~~~~~~~ 320 (393)
.++.+|++.+++++|.+. ....+...+. .....+.+.+...+. +++.++...+ .. ..++.+++++++++.+++
T Consensus 289 ~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~ 365 (450)
T PF01593_consen 289 SSVSKVFLGFDRPFWPPDIDFFGILYSDGFSPIGYVSDPSKFPGR---PGGGVLTSYVGGPDAPEWDDLSDEEILERVLD 365 (450)
T ss_dssp EEEEEEEEEESSGGGGSTTTESEEEEESSTSSEEEEEEECCTTSC---TTSEEEEEEEEHHHHHHHTTSCHHHHHHHHHH
T ss_pred CcceeEEEeeecccccccccccceecccCccccccccccccCccc---ccCCcceeeeeccccchhcccchhhhHHHHHH
Confidence 888899999999988432 1111221222 111222332222111 2344443333 32 246778899999999999
Q ss_pred HHhhhhcCCCCCceeeeEEeecCC-Cccc-----cCCCCc-CCCCCCCCCC-CceEEeccccccC-----CCc-cccchh
Q 016211 321 YLSKCIKDFSTATVMDHKIRRFPK-SLTH-----FFPGSY-KYMMRGFTSF-PNLFMAGDWITTR-----HGS-WSQVTF 386 (393)
Q Consensus 321 ~l~~~~p~~~~~~~~~~~~~~~~~-a~~~-----~~~g~~-~~~~~~~~~~-~~L~laGd~~~~~-----~ga-~s~~~a 386 (393)
+|++++|.....++....+.+|.. ..+. +.++.. ..++..++|+ +||||||||+++. +|| .||++|
T Consensus 366 ~L~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sG~~a 445 (450)
T PF01593_consen 366 DLRKILPGASIPDPIDITVTRWSRDPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTSPGYPGGIEGAILSGRRA 445 (450)
T ss_dssp HHHHHHTTGGGGEESEEEEEECTTSTTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGSSSSTTSHHHHHHHHHHH
T ss_pred HhhhccccccccccccccccccccccccccccccccccccccccccccCCcceEEEEeecccCCCCCCcHHHHHHHHHHH
Confidence 999999942112555666677765 2222 222322 1344556777 6999999999964 455 699999
Q ss_pred cc
Q 016211 387 KL 388 (393)
Q Consensus 387 ~~ 388 (393)
|+
T Consensus 446 A~ 447 (450)
T PF01593_consen 446 AE 447 (450)
T ss_dssp HH
T ss_pred HH
Confidence 86
No 25
>PLN02976 amine oxidase
Probab=99.78 E-value=2.7e-18 Score=175.07 Aligned_cols=244 Identities=16% Similarity=0.097 Sum_probs=154.8
Q ss_pred CCCcccccHHHHHHHHHHHHhhccCCcceEEecCCchhHhHHHHHHHHHHcCCeEecCceeeeEEecC--------CCCe
Q 016211 125 FAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDE--------ERCC 196 (393)
Q Consensus 125 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~--------~~~~ 196 (393)
+.+++++|+.++..- ..+ ... +.....++||++. |+++|++.+ .|++|++|++|.+.+ +++.
T Consensus 904 aa~L~eVSl~~~~qd-~~y--~~f-gG~~~rIkGGYqq-LIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~dG 973 (1713)
T PLN02976 904 AALLKEVSLPYWNQD-DVY--GGF-GGAHCMIKGGYSN-VVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRKK 973 (1713)
T ss_pred cCCHHHhhhhhhhcc-ccc--ccC-CCceEEeCCCHHH-HHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCCc
Confidence 577888888643210 001 011 1234557899998 778877644 599999999999842 1133
Q ss_pred EEEEEe-CCeEEecCEEEEecChhhHH--HHhhcccccCcHHHHhhccCCceeEEEEEEEeccCCCCCCCCcceeecCC-
Q 016211 197 ISDVVC-GKETYSAGAVVLAVGISTLQ--ELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGD- 272 (393)
Q Consensus 197 v~~v~~-~g~~~~ad~VI~a~p~~~~~--~Ll~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~- 272 (393)
|. |.+ +|+++.||+||+|+|+.+++ .+...++++ ....+.+.++.+..+.+++|.|++++|.. ..+ ++|...
T Consensus 974 Vt-VtTsDGetftADaVIVTVPLGVLKag~I~FsPPLP-e~KqaAIqrLgfG~lnKV~LeFdrpFW~~-d~d-~FG~s~e 1049 (1713)
T PLN02976 974 VK-VSTSNGSEFLGDAVLITVPLGCLKAETIKFSPPLP-DWKYSSIQRLGFGVLNKVVLEFPEVFWDD-SVD-YFGATAE 1049 (1713)
T ss_pred EE-EEECCCCEEEeceEEEeCCHHHhhhcccccCCccc-HHHHHHHHhhccccceEEEEEeCCccccC-CCC-ccccccc
Confidence 54 555 68889999999999999987 344434442 12235688999988999999999999843 111 232211
Q ss_pred --Ccc---ccceehhhhcccccCCCCc-EEEEEee-cCCCCCCCCHHHHHHHHHHHHhhhhcCCCCCceeeeEEeecCCC
Q 016211 273 --SLA---WTFFDLNKIYDEHKDDSAT-VIQADFY-HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKS 345 (393)
Q Consensus 273 --~~~---~~~~~~~~~~~~~~~~~~~-l~~~~~~-~~~~~~~~~~~e~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~a 345 (393)
+.. +.+|+.. .+.+.. |++++.. .+..+..++++++++.+++.|.++||......++.+.+++|...
T Consensus 1050 dtdlrG~~~~~wnlr------~psG~pVLVafv~G~aAreiEsLSDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssD 1123 (1713)
T PLN02976 1050 ETDLRGQCFMFWNVK------KTVGAPVLIALVVGKAAIDGQSMSSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGRD 1123 (1713)
T ss_pred cCCCCceEEEeccCC------CCCCCCEEEEEeccHhHHHHhhCCHHHHHHHHHHHHHHHcCcccccCcceeEEecCCCC
Confidence 111 1112111 111233 4443333 23456678999999999999999998532136777788888522
Q ss_pred -----ccc-cCCCCcC-CCCCCCCCCCc-eEEecccccc-----CCCc-cccchhcc
Q 016211 346 -----LTH-FFPGSYK-YMMRGFTSFPN-LFMAGDWITT-----RHGS-WSQVTFKL 388 (393)
Q Consensus 346 -----~~~-~~~g~~~-~~~~~~~~~~~-L~laGd~~~~-----~~ga-~s~~~a~~ 388 (393)
.|. ..||... .+.....|+.| |||||++|+. +||| .||+|||.
T Consensus 1124 PySrGSYSy~~PGs~~~d~d~LAePVggRLFFAGEATS~~~pGTVHGAIeSG~RAA~ 1180 (1713)
T PLN02976 1124 PFSYGAYSYVAIGASGEDYDILGRPVENCLFFAGEATCKEHPDTVGGAMMSGLREAV 1180 (1713)
T ss_pred CCcCccccCCCCCCCchHHHHHhCCCCCcEEEEehhhhCCCcchHHHHHHHHHHHHH
Confidence 222 3466432 22334567776 9999998875 7899 79999984
No 26
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.77 E-value=1.6e-16 Score=142.86 Aligned_cols=265 Identities=14% Similarity=0.083 Sum_probs=157.5
Q ss_pred HHHHHHHHHhhcCCCcccccHHHHHHHHHHHHhhccCCcceEEecCCchhHhHHHHHHHHHHcCCeEecCceeeeEEecC
Q 016211 113 RNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDE 192 (393)
Q Consensus 113 ~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~ 192 (393)
..+.+..+..+-+..........+-.++... . .......|+.|||+. +++++++.+++.|++|.+++.|.+|..++
T Consensus 219 ~l~tDavi~~~asv~~pgt~yvllh~vlg~~--d-~~~g~~~Yp~GG~Ga-vs~aia~~~~~~GaeI~tka~Vq~Illd~ 294 (561)
T KOG4254|consen 219 TLATDAVIGLLASVHTPGTGYVLLHHVLGEL--D-GHKGGWGYPRGGMGA-VSFAIAEGAKRAGAEIFTKATVQSILLDS 294 (561)
T ss_pred hhhHHHHHHhhcccCCCCcHHHHHHHHHHhh--c-ccCCcccCCCCChhH-HHHHHHHHHHhccceeeehhhhhheeccC
Confidence 3445555554444444444443333444322 1 234456899999999 99999999999999999999999999998
Q ss_pred CCCeEEEEEe-CCeEEecCEEEEecChh-hHHHHhhcccccCcHHHHhhccCCce-eEE----EEEEEeccCCCCCCCCc
Q 016211 193 ERCCISDVVC-GKETYSAGAVVLAVGIS-TLQELIKNSILCNREEFLKVLNLASI-DVV----SVKLWFDKKVTVPNVSN 265 (393)
Q Consensus 193 ~~~~v~~v~~-~g~~~~ad~VI~a~p~~-~~~~Ll~~~~~~~~~~~~~~~~~~~~-~~~----~v~l~~~~~~~~~~~~~ 265 (393)
|.++||++ ||.++++.+||+++.++ ++.+|++...++ +.+ .++++.+. ++. ..++........+-++.
T Consensus 295 --gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp~e~LP--eef-~i~q~d~~spv~k~~~psFl~~~~~~~~plph~ 369 (561)
T KOG4254|consen 295 --GKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLPGEALP--EEF-VIQQLDTVSPVTKDKLPSFLCLPNTKSLPLPHH 369 (561)
T ss_pred --CeEEEEEecCCcEEEeeeeecCCchHHHHHHhCCCccCC--chh-hhhhcccccccccccCcceeecCCCCCCCCCcc
Confidence 78999998 79999999999966665 556999987663 333 44444432 222 13333322211111111
Q ss_pred ceee---c-----------------CCCccccceeh-hhhcccccCCCCcEEEEEe-ecCCCCCCC-------CHHHHHH
Q 016211 266 ACSG---F-----------------GDSLAWTFFDL-NKIYDEHKDDSATVIQADF-YHANELMPL-------KDDQVVA 316 (393)
Q Consensus 266 ~~~~---~-----------------~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~-~~~~~~~~~-------~~~e~~~ 316 (393)
.+.- . ++....+.+.. |..++..+|++++++.+.. +...+|.+. -+++.++
T Consensus 370 ~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~~siPS~lDptlappg~Hvl~lf~~~t~~~w~g~~~~eye~~K~~~ae 449 (561)
T KOG4254|consen 370 GYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIELSIPSSLDPTLAPPGKHVLHLFTQYTPEEWEGGLKGEYETKKEAFAE 449 (561)
T ss_pred ceeEEecCchHHHHHHHHhChhhcccccCCeEEEecccccCCCcCCCCceEEEEeccCCccccccCCcccchHHHHHHHH
Confidence 1110 0 01111111111 2334455667788775422 222334332 3578899
Q ss_pred HHHHHHhhhhcCCCCCceeeeEEee----------cCCCccccCCCCcC---CCCCC-----CCCCCceEEeccccccCC
Q 016211 317 KAVSYLSKCIKDFSTATVMDHKIRR----------FPKSLTHFFPGSYK---YMMRG-----FTSFPNLFMAGDWITTRH 378 (393)
Q Consensus 317 ~~~~~l~~~~p~~~~~~~~~~~~~~----------~~~a~~~~~~g~~~---~~~~~-----~~~~~~L~laGd~~~~~~ 378 (393)
++++.+++++|+++. .++.+.+-. ..+.++....+... .+|.. ++|++|||+|||.+++..
T Consensus 450 ~~~~~ie~l~Pgfss-sv~~~dvgTP~t~qr~l~~~~Gn~~~~~~~ld~g~l~~Pv~~~s~y~tPI~~LYlcGs~afPGg 528 (561)
T KOG4254|consen 450 RVFSVIEKLAPGFSS-SVESYDVGTPPTHQRFLGRPGGNIFHGAMGLDQGYLHRPVMAWSNYSTPIPGLYLCGSGAFPGG 528 (561)
T ss_pred HHHHHHHHHcCCccc-eEEEEecCCCchhhHHhcCCCCcccCcccccccccccCCccccccCCCCCCceEEecCCCCCCC
Confidence 999999999999975 566554421 11223322222211 23433 689999999999999855
Q ss_pred Cc--cccchhc
Q 016211 379 GS--WSQVTFK 387 (393)
Q Consensus 379 ga--~s~~~a~ 387 (393)
|- ..|.-+|
T Consensus 529 GV~a~aG~~~A 539 (561)
T KOG4254|consen 529 GVMAAAGRLAA 539 (561)
T ss_pred CccccchhHHH
Confidence 44 4454444
No 27
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.75 E-value=1.1e-17 Score=152.07 Aligned_cols=220 Identities=14% Similarity=0.119 Sum_probs=147.1
Q ss_pred ecCCchhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCC-eEEecCEEEEecChhhHHHHhhcccccCcH
Q 016211 156 CRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK-ETYSAGAVVLAVGISTLQELIKNSILCNRE 234 (393)
Q Consensus 156 ~~gG~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g-~~~~ad~VI~a~p~~~~~~Ll~~~~~~~~~ 234 (393)
+.|||+. +.+++++.+ |..|.++++|.+|.++++ +|+ |+++. +++.+|.||||+|+.++.+|--.+.+ ..+
T Consensus 204 ~~GGmd~-la~Afa~ql---~~~I~~~~~V~rI~q~~~--gV~-Vt~~~~~~~~ad~~i~tiPl~~l~qI~f~P~l-~~~ 275 (450)
T COG1231 204 RLGGMDQ-LAEAFAKQL---GTRILLNEPVRRIDQDGD--GVT-VTADDVGQYVADYVLVTIPLAILGQIDFAPLL-PAE 275 (450)
T ss_pred cCccHHH-HHHHHHHHh---hceEEecCceeeEEEcCC--eEE-EEeCCcceEEecEEEEecCHHHHhhcccCCCC-CHH
Confidence 3499998 888887655 679999999999999985 476 67765 88999999999999999988655433 133
Q ss_pred HHHhhccCCceeEEEEEEEeccCCCCCCC-CcceeecCCCccccceehhhhcccccCCCCcEEEEEe--e-cCCCCCCCC
Q 016211 235 EFLKVLNLASIDVVSVKLWFDKKVTVPNV-SNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADF--Y-HANELMPLK 310 (393)
Q Consensus 235 ~~~~~~~~~~~~~~~v~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~-~~~~~~~~~ 310 (393)
+.+.+....|.++.++.+.|++|+|.... .++..-.|..+....++ +.. .+ .+..++...+ . .+-.|..++
T Consensus 276 ~~~a~~~~~y~~~~K~~v~f~rpFWee~~~l~G~~~tD~~~~~i~~~-s~~---~~-~G~gVl~g~~~~g~~A~~~~~~~ 350 (450)
T COG1231 276 YKQAAKGVPYGSATKIGVAFSRPFWEEAGILGGESLTDLGLGFISYP-SAP---FA-DGPGVLLGSYAFGDDALVIDALP 350 (450)
T ss_pred HHHHhcCcCcchheeeeeecCchhhhhcccCCceEeecCCcceEecC-ccc---cC-CCceEEEeeeeccccceeEecCC
Confidence 44566778899999999999999995432 11111012222111222 221 11 2333433222 2 455788899
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCceeeeEEeecCCC------ccccCCCCcC-CCCCCCCCCCceEEecccccc-----CC
Q 016211 311 DDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKS------LTHFFPGSYK-YMMRGFTSFPNLFMAGDWITT-----RH 378 (393)
Q Consensus 311 ~~e~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~a------~~~~~~g~~~-~~~~~~~~~~~L~laGd~~~~-----~~ 378 (393)
++++.+.++..++++||............++|... ...+.||... .-+....+.++|||||.++.+ ..
T Consensus 351 ~~~r~~~vl~~l~~~~g~~a~~~f~~~~~~~W~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~AgtEhas~~~Gw~e 430 (450)
T COG1231 351 EAERRQKVLARLAKLFGDEAADPFDYGASVDWSKDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFAGTEHASEFGGWLE 430 (450)
T ss_pred HHHHHHHHHHhHhhhCChhhccccccceeeecccCCcCCccccccCCcccccccccccCCCCceEEeeecccccccchhH
Confidence 99999999999999999543323333255566422 2234555432 345556788999999955554 66
Q ss_pred Cc-cccchhcc
Q 016211 379 GS-WSQVTFKL 388 (393)
Q Consensus 379 ga-~s~~~a~~ 388 (393)
|| .||+|||+
T Consensus 431 GAi~Sg~~AA~ 441 (450)
T COG1231 431 GAIRSGQRAAA 441 (450)
T ss_pred HHHHHHHHHHH
Confidence 88 79999985
No 28
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.73 E-value=3.2e-16 Score=136.52 Aligned_cols=228 Identities=16% Similarity=0.075 Sum_probs=147.8
Q ss_pred CcccCC-CCchHHHHHHHhCCCCCCCcccceee-ccCCceeccccccCCCCCCCCcceeccccCCCCCHhhhhcchhHHH
Q 016211 1 MQGFWY-PFRNIFSLVDELGIKPFTGWMKSAQY-SEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMA 78 (393)
Q Consensus 1 ~H~~~~-~y~~~~~Ll~elG~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~ls~~~k~~~~~~~~ 78 (393)
||+... .|||+.+|++++|++..-..-..++. ..+|.+|+.. ..+.++... +...+.+ ++..++.
T Consensus 64 fiVyn~~tYpnl~~Lf~~iGv~t~as~Msf~v~~d~gglEy~g~------tgl~~L~aq---k~n~l~p----Rf~~mla 130 (447)
T COG2907 64 FIVYNERTYPNLTRLFKTIGVDTKASFMSFSVSLDMGGLEYSGL------TGLAGLLAQ---KRNLLRP----RFPCMLA 130 (447)
T ss_pred eEEecCCCcchHHHHHHHcCCCCcccceeEEEEecCCceeeccC------CCccchhhc---cccccch----hHHHHHH
Confidence 345554 89999999999999865332222222 2345554311 112222211 1111111 1222222
Q ss_pred HHhhcC---CCchhhhcccCccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHhhccC----Cc
Q 016211 79 AVIDFD---NTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQK----NF 151 (393)
Q Consensus 79 ~~~~~~---~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~----~~ 151 (393)
.+++++ ..+.+.....++|+.+||++++++..+++.++.|+..++|+++..+++...+..+++.+ ..++- +.
T Consensus 131 eiLrf~r~~~~~~d~~~~~~~tl~~~L~~~~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~~f~-~nhGll~l~~r 209 (447)
T COG2907 131 EILRFYRSDLAPSDNAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWSTPLADASRYPACNFLVFT-DNHGLLYLPKR 209 (447)
T ss_pred HHHHHhhhhccchhhhcCCCccHHHHHHhcCccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHHHHH-hccCceecCCC
Confidence 223222 12334445578999999999999999999999999999999999999887777666554 22211 11
Q ss_pred ceEE-ecCCchhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChhhHHHHhhcccc
Q 016211 152 DLVW-CRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSIL 230 (393)
Q Consensus 152 ~~~~-~~gG~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~~~~~Ll~~~~~ 230 (393)
..+. ..||... .+++|.+.+ +++|.++++|.+|..-.+| |..+..+|++.++|+||+|+.++++..||+++.
T Consensus 210 p~wrtV~ggS~~-yvq~laa~~---~~~i~t~~~V~~l~rlPdG--v~l~~~~G~s~rFD~vViAth~dqAl~mL~e~s- 282 (447)
T COG2907 210 PTWRTVAGGSRA-YVQRLAADI---RGRIETRTPVCRLRRLPDG--VVLVNADGESRRFDAVVIATHPDQALALLDEPS- 282 (447)
T ss_pred CceeEcccchHH-HHHHHhccc---cceeecCCceeeeeeCCCc--eEEecCCCCccccceeeeecChHHHHHhcCCCC-
Confidence 1222 4477665 666665433 6789999999999998863 553444699999999999999999999999864
Q ss_pred cCcHHHHhhccCCceeEEEEE
Q 016211 231 CNREEFLKVLNLASIDVVSVK 251 (393)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~v~ 251 (393)
+++.+.+..+.|+....|.
T Consensus 283 --p~e~qll~a~~Ys~n~aVl 301 (447)
T COG2907 283 --PEERQLLGALRYSANTAVL 301 (447)
T ss_pred --HHHHHHHHhhhhhhceeEE
Confidence 4455567888887654443
No 29
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.62 E-value=2.1e-14 Score=138.72 Aligned_cols=268 Identities=12% Similarity=0.050 Sum_probs=149.7
Q ss_pred cCccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHhhccCCcceEEecCCchhHhHHHHHHHHH
Q 016211 94 DSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMR 173 (393)
Q Consensus 94 d~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~l~~~l~~~l~ 173 (393)
...|+.++++.. +..+.++.++.....-.. .++.+.++ +..++... .......+++|||+. ++++|++.++
T Consensus 165 ~~~~~~~~~~~~-f~~~~~r~~~~~~~~~~~-~~p~~~~a--~~~~~~~~----~~~~G~~~p~GG~~a-l~~aL~~~~~ 235 (487)
T COG1233 165 SLTSALDFFRGR-FGSELLRALLAYSAVYGG-APPSTPPA--LYLLLSHL----GLSGGVFYPRGGMGA-LVDALAELAR 235 (487)
T ss_pred hhhhHHHHHHHH-hcCHHHHHHHHHHHHhcC-CCCCchhH--HHHHHHHh----cccCCeeeeeCCHHH-HHHHHHHHHH
Confidence 567888888887 655556666665433333 56666662 22222221 233457889999999 8999999999
Q ss_pred HcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhhHHHHhhcccccCcHHHHhhccC-CceeEEEEE
Q 016211 174 TRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNL-ASIDVVSVK 251 (393)
Q Consensus 174 ~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~~~~Ll~~~~~~~~~~~~~~~~~-~~~~~~~v~ 251 (393)
+.|++|+++++|++|..++ |+..++++ +|+.+++|.||++..+.....+.+.... .+..... +..+.+..+
T Consensus 236 ~~Gg~I~~~~~V~~I~v~~--g~g~~~~~~~g~~~~ad~vv~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~al~~~ 308 (487)
T COG1233 236 EHGGEIRTGAEVSQILVEG--GKGVGVRTSDGENIEADAVVSNADPALLARLLGEARR-----PRYRGSYLKSLSALSLY 308 (487)
T ss_pred HcCCEEECCCceEEEEEeC--CcceEEeccccceeccceeEecCchhhhhhhhhhhhh-----hccccchhhhhHHHHhc
Confidence 9999999999999999998 44444555 4567999999999999545555554211 0111111 122344556
Q ss_pred EEeccCCCCCCCCcceeecCC--Ccc-----------c-cceehhhhcccccCCCCcEEEEEee--cCCCCCCCCHHHHH
Q 016211 252 LWFDKKVTVPNVSNACSGFGD--SLA-----------W-TFFDLNKIYDEHKDDSATVIQADFY--HANELMPLKDDQVV 315 (393)
Q Consensus 252 l~~~~~~~~~~~~~~~~~~~~--~~~-----------~-~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~e~~ 315 (393)
+.++.........+.++..+. .+. + .+.-.+..++..+|++++.+...+. +...+.+..++++.
T Consensus 309 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~ps~~Dps~AP~G~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (487)
T COG1233 309 LGLKGDLLPLAHHTTILLGDTREQIEEAFDDRAGRPPPLYVSIPSLTDPSLAPEGKHSTFAQLVPVPSLGDYDELKESLA 388 (487)
T ss_pred cCCCCCCcchhhcceEecCCcHHHHHHHhhhhcCCCCceEEeCCCCCCCccCCCCCcceeeeeeecCcCCChHHHHHHHH
Confidence 666653110111122221111 000 0 0111223334455445441111222 21222233455555
Q ss_pred HHHHHHHhhhhcCCCCCceeeeEEeec----------CCCccccC---CCCcCCCCCC-CCCCCceEEeccccccCCC
Q 016211 316 AKAVSYLSKCIKDFSTATVMDHKIRRF----------PKSLTHFF---PGSYKYMMRG-FTSFPNLFMAGDWITTRHG 379 (393)
Q Consensus 316 ~~~~~~l~~~~p~~~~~~~~~~~~~~~----------~~a~~~~~---~g~~~~~~~~-~~~~~~L~laGd~~~~~~g 379 (393)
+. +..++++.|++++ .++...+..- .+..+... .+....||.. +|+++|||+||++|+++-|
T Consensus 389 ~~-~~~~~~~~p~~~~-~iv~~~~~tp~~~e~~~~~~~G~~~~~~~~~~q~~~~rp~~~~t~i~~LYl~Ga~t~PG~G 464 (487)
T COG1233 389 DA-IDALEELAPGLRD-RIVAREVLTPLDLERYLGLPGGDIFGGAHTLDQLGPFRPPPKSTPIKGLYLVGASTHPGGG 464 (487)
T ss_pred HH-HHHHhhcCCCccc-ceeEEEEeChHHHHHhcCCCCCcccchhcChhhhcCCCCCCCCCCcCceEEeCCcCCCCCC
Confidence 55 6688999999975 5555443311 11111111 1122334544 5899999999999998443
No 30
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.59 E-value=3.1e-14 Score=135.89 Aligned_cols=219 Identities=21% Similarity=0.231 Sum_probs=143.8
Q ss_pred EEecCCchhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhhHHH--Hhhcccc
Q 016211 154 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQE--LIKNSIL 230 (393)
Q Consensus 154 ~~~~gG~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~~~~--Ll~~~~~ 230 (393)
....+|+.. +++.+.. |.+|+++++|.+|...++ +.+. ++. ++..+.+|.||+++|..+++. +...+++
T Consensus 212 ~~~~~G~~~-v~~~la~-----~l~I~~~~~v~~i~~~~~-~~~~-~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~L 283 (501)
T KOG0029|consen 212 LLMKGGYEP-VVNSLAE-----GLDIHLNKRVRKIKYGDD-GAVK-VTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPL 283 (501)
T ss_pred hHhhCCccH-HHhhcCC-----CcceeeceeeEEEEEecC-CceE-EEEECCCeeEeeEEEEEccHHHhccCceeeCCCC
Confidence 344578766 4444432 889999999999999876 3332 333 455599999999999999986 4444433
Q ss_pred cCcHHHHhhccCCceeEEEEEEEeccCCCCCCCCcceeecCC---Cccc--cceehhhhcccccCCCCcEEEEEee-cCC
Q 016211 231 CNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGD---SLAW--TFFDLNKIYDEHKDDSATVIQADFY-HAN 304 (393)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~-~~~ 304 (393)
+ ......|++++...+.+|.+.|++.+|.+. .. .++... ...+ .+++..... ....++..+.. .+.
T Consensus 284 p-~~k~~aI~~lg~g~~~Kv~l~F~~~fW~~~-~d-~fg~~~~~~~~~~~~~f~~~~~~~-----~~~~l~~~~~~~~a~ 355 (501)
T KOG0029|consen 284 P-RWKQEAIDRLGFGLVNKVILEFPRVFWDQD-ID-FFGIVPETSVLRGLFTFYDCKPVA-----GHPVLMSVVVGEAAE 355 (501)
T ss_pred c-HHHHHHHHhcCCCceeEEEEEeccccCCCC-cC-eEEEccccccccchhhhhhcCccC-----CCCeEEEEehhhhhH
Confidence 1 233468899998899999999999999521 22 333221 1111 123322211 12234433333 356
Q ss_pred CCCCCCHHHHHHHHHHHHhhhhcCCCCCceeeeEEeecCCC------ccccCCCCcCCC-CCCCCCCCc-eEEecccccc
Q 016211 305 ELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKS------LTHFFPGSYKYM-MRGFTSFPN-LFMAGDWITT 376 (393)
Q Consensus 305 ~~~~~~~~e~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~a------~~~~~~g~~~~~-~~~~~~~~~-L~laGd~~~~ 376 (393)
.+..++++++++.++..|+++|+......++++.+.+|... .+.+.++..... ..+..|+.| +||||++|..
T Consensus 356 ~~~~~~~~~~~~~~~~~l~k~f~~~~~~~p~~~~vt~w~~d~~~~gsys~~~~~~~~~~y~~l~~pi~~~~ffage~t~~ 435 (501)
T KOG0029|consen 356 RVETLSDSEIVKKAMKLLRKVFGSEEVPDPLDALVTRWGTDPLSGGSYSYVAVGSDGDDYDRLAEPIKNRVFFAGEATSR 435 (501)
T ss_pred HHhcCCHHHHHHHHHHHHHHHhccCcCCCccceeeeeecccccCCccccccCCCCChhHHHHHhccccCcEEecchhhcc
Confidence 67889999999999999999999432246778888888632 222223322111 234578888 9999999984
Q ss_pred -----CCCc-cccchhcc
Q 016211 377 -----RHGS-WSQVTFKL 388 (393)
Q Consensus 377 -----~~ga-~s~~~a~~ 388 (393)
+||| +||.+||.
T Consensus 436 ~~~~tm~GA~~sG~~~a~ 453 (501)
T KOG0029|consen 436 KYPGTMHGAYLSGLRAAS 453 (501)
T ss_pred cCCCchHHHHHhhHHHHH
Confidence 8899 89999885
No 31
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.54 E-value=4.9e-15 Score=125.06 Aligned_cols=212 Identities=13% Similarity=0.053 Sum_probs=139.5
Q ss_pred CCchhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CC-eEEecCEEEEecChhhHHHHhhcccccCcH-
Q 016211 158 GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK-ETYSAGAVVLAVGISTLQELIKNSILCNRE- 234 (393)
Q Consensus 158 gG~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g-~~~~ad~VI~a~p~~~~~~Ll~~~~~~~~~- 234 (393)
-||+. |.+.|+ ...+|+++++|++|...+ +.+ .+.+ +| +...+|.||+|+|++++..|+.......+.
T Consensus 105 pgmsa-lak~LA-----tdL~V~~~~rVt~v~~~~--~~W-~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p~~ 175 (331)
T COG3380 105 PGMSA-LAKFLA-----TDLTVVLETRVTEVARTD--NDW-TLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDLPAA 175 (331)
T ss_pred cchHH-HHHHHh-----ccchhhhhhhhhhheecC--Cee-EEEecCCCcccccceEEEecCCCcchhhcCcccccchHH
Confidence 46655 444332 356899999999999985 444 4777 43 568899999999999999998643111133
Q ss_pred HHHhhccCCceeEEEEEEEeccCCCCCCCCcceeecCCCccccceehhhhcccccCCCCcEEEEEee--cCCCCCCCCHH
Q 016211 235 EFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFY--HANELMPLKDD 312 (393)
Q Consensus 235 ~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~ 312 (393)
..+.+..+.|.|++++.++|..+...|.+. ++--+..+.|...|.++. ... |.+....+..+ .+.+..+.+++
T Consensus 176 l~~~~a~V~y~Pc~s~~lg~~q~l~~P~~G--~~vdg~~laWla~d~sK~--g~~-p~~~~~vvqasp~wSr~h~~~~~e 250 (331)
T COG3380 176 LRAALADVVYAPCWSAVLGYPQPLDRPWPG--NFVDGHPLAWLARDASKK--GHV-PDGEIWVVQASPDWSREHLDHPAE 250 (331)
T ss_pred HHHhhccceehhHHHHHhcCCccCCCCCCC--cccCCCeeeeeeccccCC--CCC-CcCceEEEEeCchHHHHhhcCCHH
Confidence 335778888999999999998887755443 332344566655554442 222 23332222222 23455567888
Q ss_pred HHHHHHHHHHhhhhc-CCCCCceeeeEEeecCCCccccCCCCcCCCCCCCCCCCceEEecccccc--CCCc-cccchhcc
Q 016211 313 QVVAKAVSYLSKCIK-DFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITT--RHGS-WSQVTFKL 388 (393)
Q Consensus 313 e~~~~~~~~l~~~~p-~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~L~laGd~~~~--~~ga-~s~~~a~~ 388 (393)
+.+..+......+.+ .+. ++.....++|+++.|.-..+... ....+--+||+||||++. .+|| +||..||.
T Consensus 251 ~~i~~l~aA~~~~~~~~~~--~p~~s~~H~WrYA~P~~~~~~~~---L~ad~~~~l~~cGDwc~GgrVEgA~LSGlAaA~ 325 (331)
T COG3380 251 QVIVALRAAAQELDGDRLP--EPDWSDAHRWRYAIPNDAVAGPP---LDADRELPLYACGDWCAGGRVEGAVLSGLAAAD 325 (331)
T ss_pred HHHHHHHHhhhhccCCCCC--cchHHHhhccccccccccccCCc---cccCCCCceeeecccccCcchhHHHhccHHHHH
Confidence 888777777777776 343 67777889999998765443321 111222579999999997 8899 89987763
No 32
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.53 E-value=5.2e-13 Score=126.28 Aligned_cols=195 Identities=13% Similarity=0.196 Sum_probs=131.0
Q ss_pred chHHHHHHHhCCCCCCCccc-ce--eeccCCceeccccccCCCCCCCCcceeccccCCCCCHhhhhcchhHHHHHhhcCC
Q 016211 9 RNIFSLVDELGIKPFTGWMK-SA--QYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDN 85 (393)
Q Consensus 9 ~~~~~Ll~elG~~~~~~~~~-~~--~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~ls~~~k~~~~~~~~~~~~~~~ 85 (393)
-.+.+++.+.|+...+.+.. .. +|..+|+.+ ..|.+....++.+.+++.+|.++.+++..+.+.+.
T Consensus 84 G~lv~lL~~s~v~ryleF~~l~g~~v~~~~g~~~-----------~vP~s~~~~~~s~ll~l~eKr~l~kfl~~v~~~~~ 152 (443)
T PTZ00363 84 GELVKILLHTDVTRYLEFKVIDGSYVYQKEGKIH-----------KVPATDMEALSSPLMGFFEKNRCKNFLQYVSNYDE 152 (443)
T ss_pred ChHHHHHhhcCccceeeeEEeceEEEEecCCeEE-----------ECCCCHHHHhhCCCcchhhHHHHHHHHHHHHhhcc
Confidence 56778888899987766653 22 222455432 13555555788899999999999887776655543
Q ss_pred Cc-hhhhc--ccCccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHH--hhccCCcceEEecCCc
Q 016211 86 TD-VAWRK--YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII--LAHQKNFDLVWCRGTL 160 (393)
Q Consensus 86 ~~-~~~~~--~d~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~--~~~~~~~~~~~~~gG~ 160 (393)
.+ ..+.. ++.+|+.+|++++++++..++ ++..++......+..+.++...+..++.++ ++..+...+.|+.||+
T Consensus 153 ~~~~~~~~~~~d~~T~~d~L~~~~ls~~~~d-~i~~~ial~~~~~~~~~pa~~tl~ri~~y~~S~~~~g~~p~~yp~gG~ 231 (443)
T PTZ00363 153 NDPETHKGLNLKTMTMAQLYKKFGLEDNTID-FVGHAVALYTNDDYLNKPAIETVMRIKLYMDSLSRYGKSPFIYPLYGL 231 (443)
T ss_pred CChhhhcccCcccCCHHHHHHHhCCCHHHHH-HHHHHHHhhcccccccCCHHHHHHHHHHHHHHHhhccCCcceeeCCCH
Confidence 11 23333 457999999999999998764 444443333222112223333333332221 1222233468899999
Q ss_pred hhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecC
Q 016211 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVG 217 (393)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p 217 (393)
++ |++++++.++..|++++++++|++|..+++ +++.+|++ +|+++.|+.||+...
T Consensus 232 g~-L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~-g~~~~V~~~~Ge~i~a~~VV~~~s 287 (443)
T PTZ00363 232 GG-LPQAFSRLCAIYGGTYMLNTPVDEVVFDEN-GKVCGVKSEGGEVAKCKLVICDPS 287 (443)
T ss_pred HH-HHHHHHHHHHHcCcEEEcCCeEEEEEEcCC-CeEEEEEECCCcEEECCEEEECcc
Confidence 98 999999999999999999999999998764 56777888 688999999998433
No 33
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=99.50 E-value=1.8e-13 Score=124.88 Aligned_cols=228 Identities=18% Similarity=0.178 Sum_probs=136.9
Q ss_pred eEEecCCchhHhHHHHHHHHHH----cC--CeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhhHHH--
Q 016211 153 LVWCRGTLREKIFEPWMDSMRT----RG--CEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQE-- 223 (393)
Q Consensus 153 ~~~~~gG~~~~l~~~l~~~l~~----~G--~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~~~~-- 223 (393)
.-+.+-|... +.+.|++.+.+ .| .+|+++++|.+|..+++ +.|. |++ ||+.+.||||||+++..++++
T Consensus 215 ~~~~~kGy~~-iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~~-~~v~-l~c~dg~v~~adhVIvTvsLGvLk~~h 291 (498)
T KOG0685|consen 215 LIWNKKGYKR-ILKLLMAVIPAQNIELGLWKRIHLNTRVENINWKNT-GEVK-LRCSDGEVFHADHVIVTVSLGVLKEQH 291 (498)
T ss_pred heechhHHHH-HHHHHhccCCCcchhcCchhhhcccccceeeccCCC-CcEE-EEEeCCcEEeccEEEEEeechhhhhhh
Confidence 3455567666 55666665433 22 46777799999999876 5665 676 899999999999999999987
Q ss_pred --HhhcccccCcHHHHhhccCCceeEEEEEEEeccCCCCCCCCcc--eeecCCC---c----cccceehhhhcccccCCC
Q 016211 224 --LIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNA--CSGFGDS---L----AWTFFDLNKIYDEHKDDS 292 (393)
Q Consensus 224 --Ll~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~--~~~~~~~---~----~~~~~~~~~~~~~~~~~~ 292 (393)
|..+ +++ ....++|++++...+.+++|-|.+|+|.+ ..+. ++-.+.. + .++.-+..-..+- +..
T Consensus 292 ~~lF~P-~LP-~~K~~AIe~lgfGtv~KiFLE~E~pfwp~-~~~~i~~lw~~e~l~e~r~~~~~w~~~~~~f~~v--~~~ 366 (498)
T KOG0685|consen 292 HKLFVP-PLP-AEKQRAIERLGFGTVNKIFLEFEEPFWPS-DWNGIQLLWLDEDLEELRSTLDAWEEDIMGFQPV--SWA 366 (498)
T ss_pred hhhcCC-CCC-HHHHHHHHhccCCccceEEEEccCCCCCC-CCceeEEEEecCcHHHHhhhhHHHHhhceEEEEc--Ccc
Confidence 4333 231 22336899999999999999999999932 2221 1111211 0 0011111100010 112
Q ss_pred CcEEEEEe-e-cCCCCCCCCHHHHHHHHHHHHhhhhcCCCCCceeeeEEeecC-----CCcccc-CCCCcC--------C
Q 016211 293 ATVIQADF-Y-HANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFP-----KSLTHF-FPGSYK--------Y 356 (393)
Q Consensus 293 ~~l~~~~~-~-~~~~~~~~~~~e~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~-----~a~~~~-~~g~~~--------~ 356 (393)
..++..-+ . .+....+++++|+.+.+...|.+++++..-+++....-..|. ++.|.| ++|... -
T Consensus 367 ~~vL~gWiaG~~~~~me~lsdEev~e~~~~~lr~fl~n~~iP~p~kilRs~W~snp~frGSYSY~svgs~~~d~~~~a~p 446 (498)
T KOG0685|consen 367 PNVLLGWIAGREARHMETLSDEEVLEGLTKLLRKFLKNPEIPKPKKILRSQWISNPFFRGSYSYRSVGSDGSDTGALALP 446 (498)
T ss_pred hhhhheeccCCcceehhhCCHHHHHHHHHHHHHHhcCCCCCCCchhhhhhcccCCCccCceeeEeeccccccccchhhcc
Confidence 24443333 3 334566889999999999999999865322233222212232 222333 333211 1
Q ss_pred CCCC-CCCCCceEEeccccc-----cCCCc-cccchhcc
Q 016211 357 MMRG-FTSFPNLFMAGDWIT-----TRHGS-WSQVTFKL 388 (393)
Q Consensus 357 ~~~~-~~~~~~L~laGd~~~-----~~~ga-~s~~~a~~ 388 (393)
.|.. .+.-|.+.|||..|+ |.||| +||-|.|+
T Consensus 447 ~p~~~~~~~p~I~FAGEaThr~~YsTthGA~~SG~REA~ 485 (498)
T KOG0685|consen 447 LPLTLVTGRPQILFAGEATHRTFYSTTHGAVLSGWREAD 485 (498)
T ss_pred CCccccCCCceEEEccccccccceehhhhhHHhhHHHHH
Confidence 1211 224468999999998 49999 89988774
No 34
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=99.10 E-value=4.2e-09 Score=98.70 Aligned_cols=195 Identities=16% Similarity=0.206 Sum_probs=130.0
Q ss_pred CCCCchHHHHHHHhCCCCCCCccc-ceeec-cCCceeccccccCCCCCCCCcceeccccCCCCCHhhhhcchhHHHHHhh
Q 016211 5 WYPFRNIFSLVDELGIKPFTGWMK-SAQYS-EEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVID 82 (393)
Q Consensus 5 ~~~y~~~~~Ll~elG~~~~~~~~~-~~~~~-~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~ls~~~k~~~~~~~~~~~~ 82 (393)
+-+.-.+.++|-.-|+...+.|.. ...|. .+|+.. . .|.+-..+++.+.+++.+|-++.+++.....
T Consensus 81 l~a~g~LV~lLi~S~V~rYLEFk~V~~~~v~~~~~l~---------k--VP~sr~dvf~s~~lsl~eKR~lmkFl~~v~~ 149 (438)
T PF00996_consen 81 LYARGPLVKLLISSGVTRYLEFKAVDGSYVYKNGKLH---------K--VPCSREDVFKSKLLSLFEKRRLMKFLKFVAN 149 (438)
T ss_dssp EETTSHHHHHHHHCTGGGGSEEEEESEEEEEETTEEE---------E----SSHHHHHC-TTS-HHHHHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHhCCcccceEEEEcceeEEEeCCEEe---------e--CCCCHHHhhcCCCccHHHHHHHHHHHHHHhh
Confidence 445567888888889987777764 22222 455432 1 3455445788999999999999988777666
Q ss_pred cCCCc-hhhhc--ccCccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCc-ccccHHHHHHHHHHHH--hhccCCcceEEe
Q 016211 83 FDNTD-VAWRK--YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPA-EQCSAAATLGILYFII--LAHQKNFDLVWC 156 (393)
Q Consensus 83 ~~~~~-~~~~~--~d~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~s~~~~~~~~~~~~--~~~~~~~~~~~~ 156 (393)
++.+. ..++. ..+.|+.++++++++++...+.+...+ +++..+. -+-++...+..++.++ ++..+.+.+.||
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~e~~~~f~L~~~~~~~i~hai--aL~~~~~~~~~p~~~~l~ri~~yl~SlgryG~sPfLyP 227 (438)
T PF00996_consen 150 YEEDDPSTHKGLDPEKKTFQELLKKFGLSENLIDFIGHAI--ALSLDDSYLTEPAREGLERIKLYLSSLGRYGKSPFLYP 227 (438)
T ss_dssp GCTTBGGGSTTG-TTTSBHHHHHHHTTS-HHHHHHHHHHT--S-SSSSGGGGSBSHHHHHHHHHHHHHHCCCSSSSEEEE
T ss_pred cccCCcchhhccccccccHHHHHHhcCCCHHHHHHHHHhh--hhccCcccccccHHHHHHHHHHHHHHHhccCCCCEEEE
Confidence 65322 23332 357899999999999988764443222 2222221 1224566666666653 234445578999
Q ss_pred cCCchhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEE
Q 016211 157 RGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVL 214 (393)
Q Consensus 157 ~gG~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~ 214 (393)
.-|.++ |++++.+..+=.|+...||++|.+|..+++ |++.+|..+|+++.|+.||.
T Consensus 228 ~YG~GE-LpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~-g~~~gV~s~ge~v~~k~vI~ 283 (438)
T PF00996_consen 228 LYGLGE-LPQAFCRLSAVYGGTYMLNRPIDEIVVDED-GKVIGVKSEGEVVKAKKVIG 283 (438)
T ss_dssp TT-TTH-HHHHHHHHHHHTT-EEESS--EEEEEEETT-TEEEEEEETTEEEEESEEEE
T ss_pred ccCCcc-HHHHHHHHhhhcCcEEEeCCccceeeeecC-CeEEEEecCCEEEEcCEEEE
Confidence 988999 999999988778999999999999999765 67888888999999999996
No 35
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.90 E-value=5e-08 Score=93.88 Aligned_cols=125 Identities=17% Similarity=0.128 Sum_probs=90.3
Q ss_pred hcccCccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHH---hhccCCcceEEecCCchhHhHHH
Q 016211 91 RKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII---LAHQKNFDLVWCRGTLREKIFEP 167 (393)
Q Consensus 91 ~~~d~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~---~~~~~~~~~~~~~gG~~~~l~~~ 167 (393)
+++|+.|+.||++++++.. ..-.+|..+ ++ -.+..||..+..++++++ ..-...+.+.+.+....+.++.+
T Consensus 158 ~~Ld~~tI~d~f~~~Ff~t-~Fw~~w~t~----Fa-F~~whSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~P 231 (576)
T PRK13977 158 EKLDDKTIEDWFSPEFFET-NFWYYWRTM----FA-FEKWHSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLP 231 (576)
T ss_pred HHhCCcCHHHHHhhcCchh-HHHHHHHHH----HC-CchhhHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHH
Confidence 3589999999999976644 334556554 33 347789999999998773 12223344555566666779999
Q ss_pred HHHHHHHcCCeEecCceeeeEEec--CCCCeEEEEEe--CC--e---EEecCEEEEecChhhH
Q 016211 168 WMDSMRTRGCEFLDGRRVTDFIYD--EERCCISDVVC--GK--E---TYSAGAVVLAVGISTL 221 (393)
Q Consensus 168 l~~~l~~~G~~i~l~~~V~~I~~~--~~~~~v~~v~~--~g--~---~~~ad~VI~a~p~~~~ 221 (393)
|.+.|+++|++|++|++|++|..+ ++.++|++|.+ +| + ....|.||+|+..-+-
T Consensus 232 L~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~ 294 (576)
T PRK13977 232 LIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITE 294 (576)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCcc
Confidence 999999999999999999999985 22256888876 33 2 2467899998765443
No 36
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=3.6e-07 Score=82.21 Aligned_cols=197 Identities=15% Similarity=0.197 Sum_probs=130.8
Q ss_pred cCCCCchHHHHHHHhCCCCCCCccc-c-eeeccCCceeccccccCCCCCCCCcceeccccCCCCCHhhhhcchhHHHHHh
Q 016211 4 FWYPFRNIFSLVDELGIKPFTGWMK-S-AQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVI 81 (393)
Q Consensus 4 ~~~~y~~~~~Ll~elG~~~~~~~~~-~-~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~ls~~~k~~~~~~~~~~~ 81 (393)
|+-+...+.++|-+-|+...+.+.. . +++..+|+.+. .|-+-...+.++.+++.+|=++.+++....
T Consensus 80 ~lmAn~~Lvk~Li~T~V~~YL~fk~i~gsfv~~~~k~~K-----------VP~t~~Ea~~s~lmgl~eKrr~~kFl~~V~ 148 (440)
T KOG1439|consen 80 FLMANGELVKILIHTGVTRYLEFKSISGSFVYKKGKIYK-----------VPATEAEALTSPLMGLFEKRRVMKFLKFVL 148 (440)
T ss_pred hhhccchHHHHHHHhchhhheEEEeecceEEEECCeEEE-----------CCCCHHHHhcCCccchhHHHHHHHHHHHHh
Confidence 3455667788888888887666664 2 22224565432 244444478899999999999888877766
Q ss_pred hcCC-CchhhhcccC--ccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHH--hhccCCcceEEe
Q 016211 82 DFDN-TDVAWRKYDS--ITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII--LAHQKNFDLVWC 156 (393)
Q Consensus 82 ~~~~-~~~~~~~~d~--~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~--~~~~~~~~~~~~ 156 (393)
+++. ....|..++. .|+.+++.+.++.++.++.. ...+......+--+.++..++..+..++ ++..+.+...||
T Consensus 149 n~~e~~~~~~~~~~~~k~tm~~~~~~~~l~~~~~~f~-gh~~al~~dd~~ld~p~~~~~~ri~~Y~~S~~~yg~~~ylyP 227 (440)
T KOG1439|consen 149 NYDEEDPKTWQGYDLSKDTMREFLGKFGLLEGTIDFI-GHAIALLCDDSYLDQPAKETLERILLYVRSFARYGKSPYLYP 227 (440)
T ss_pred hhhhhccccccccccccchHHHHHHHhcccccceeee-eeeeEEEecchhccCccHHHHHHHHHHHHHHhhcCCCcceec
Confidence 6543 3445555543 39999999988888776432 1111111111122334444444444442 233344447889
Q ss_pred cCCchhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEE
Q 016211 157 RGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVL 214 (393)
Q Consensus 157 ~gG~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~ 214 (393)
..|+++ +++..++.-.=.|+...||.++.+|..+++ |.+.+|..+++...+..||+
T Consensus 228 ~yGlgE-L~QgFaRlsAvyGgTYMLn~pi~ei~~~~~-gk~igvk~~~~v~~~k~vi~ 283 (440)
T KOG1439|consen 228 LYGLGE-LPQGFARLSAVYGGTYMLNKPIDEINETKN-GKVIGVKSGGEVAKCKKVIC 283 (440)
T ss_pred ccCcch-hhHHHHHHhhccCceeecCCceeeeeccCC-ccEEEEecCCceeecceEEe
Confidence 999999 999998876667999999999999999655 67877887888888887777
No 37
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.99 E-value=0.00035 Score=64.67 Aligned_cols=57 Identities=18% Similarity=0.232 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChhhHH
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ 222 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~~~~ 222 (393)
+...+.+.+++.|++|+.+++|++|..++ +++.+|.++++++.||+||+|+.++.-.
T Consensus 139 l~~~l~~~~~~~g~~~~~~~~v~~i~~~~--~~~~~v~~~~g~~~a~~vV~a~G~~~~~ 195 (337)
T TIGR02352 139 LLKALEKALEKLGVEIIEHTEVQHIEIRG--EKVTAIVTPSGDVQADQVVLAAGAWAGE 195 (337)
T ss_pred HHHHHHHHHHHcCCEEEccceEEEEEeeC--CEEEEEEcCCCEEECCEEEEcCChhhhh
Confidence 67788888889999999999999999876 5677788765589999999999987743
No 38
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=9.2e-05 Score=66.36 Aligned_cols=193 Identities=13% Similarity=0.162 Sum_probs=122.2
Q ss_pred cCCCCchHHHHHHHhCCCCCCCccc-c-eeeccCCceeccccccCCCCCCCCcceeccccCCCCCHhhhhcchhHHHHHh
Q 016211 4 FWYPFRNIFSLVDELGIKPFTGWMK-S-AQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVI 81 (393)
Q Consensus 4 ~~~~y~~~~~Ll~elG~~~~~~~~~-~-~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~ls~~~k~~~~~~~~~~~ 81 (393)
++-+...+..+|-+-|+...+.+.. . ..+..+|+.+. .|-+-...++.+.+|+.+|=++.+++....
T Consensus 81 ~l~A~s~l~~iLi~t~v~~YLefk~i~~~~~~~~~k~~k-----------VP~ne~ei~~s~~lsL~eKr~vmrFl~~V~ 149 (434)
T COG5044 81 FLFANSELLKILIETGVTEYLEFKQISGSFLYRPGKIYK-----------VPYNEAEIFTSPLLSLFEKRRVMRFLKWVS 149 (434)
T ss_pred hhcccchHHHHHHHhChHhheeeeeccccEEecCCcEEE-----------CCccHHhhhcCCCcchhhHHHHHHHHHHHH
Confidence 4556777888888999987666654 2 22224454321 244544578899999999998887764433
Q ss_pred hcCCCchhhhccc-CccHHHHHH-HcCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHh--hccCCcceEEec
Q 016211 82 DFDNTDVAWRKYD-SITARELFK-QFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIIL--AHQKNFDLVWCR 157 (393)
Q Consensus 82 ~~~~~~~~~~~~d-~~s~~~~l~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~--~~~~~~~~~~~~ 157 (393)
+.......+.++. +.++.+++. ..+++....+.+...++..+ + -+..+..++..+..++. +..+.+...||+
T Consensus 150 n~~~~~~~~~~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~l~l---d-l~~p~re~~erIl~Y~~Sf~~yg~~pyLyp~ 225 (434)
T COG5044 150 NYAEQKSTLQELYESKDTMEFLFEKFGLSGATEEFIGHGIALSL---D-LDIPAREALERILRYMRSFGDYGKSPYLYPR 225 (434)
T ss_pred hHHhhhhhchhhhhcccHHHHHHHHHccCcchhhhhhhhhhhhc---c-ccCCchHHHHHHHHHHHhhcccCCCcceeec
Confidence 3322233444443 244555554 45666655444444444332 2 33455555555544431 333445578899
Q ss_pred CCchhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEe
Q 016211 158 GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLA 215 (393)
Q Consensus 158 gG~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a 215 (393)
-|+++ +++..++.-.-.|+...+|+++.+|..+++ |.+|..++.+..|..||+.
T Consensus 226 YGl~E-l~QGFaRssav~GgtymLn~~i~ein~tk~---v~~v~~~~~~~ka~KiI~~ 279 (434)
T COG5044 226 YGLGE-LSQGFARSSAVYGGTYMLNQAIDEINETKD---VETVDKGSLTQKAGKIISS 279 (434)
T ss_pred cCchh-hhHHHHHhhhccCceeecCcchhhhccccc---eeeeecCcceeecCcccCC
Confidence 78999 999999887667999999999999998763 4445556778888888764
No 39
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=97.92 E-value=0.00097 Score=63.74 Aligned_cols=55 Identities=20% Similarity=0.222 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~~ 220 (393)
+.+.+.+.+++.|++|+++++|++|+.++ +++.+|++++.++.||+||+|+.++.
T Consensus 203 ~~~~l~~~~~~~G~~i~~~~~V~~i~~~~--~~~~~v~t~~~~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 203 FTQRLAAMAEQLGVKFRFNTPVDGLLVEG--GRITGVQTGGGVITADAYVVALGSYS 257 (416)
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEEEEecC--CEEEEEEeCCcEEeCCEEEECCCcch
Confidence 66788888888999999999999999876 45666777777899999999999876
No 40
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=97.81 E-value=7.9e-05 Score=68.98 Aligned_cols=117 Identities=22% Similarity=0.225 Sum_probs=79.5
Q ss_pred ccCccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHhhccCCcceEEecCCchhHhHHHHHHHH
Q 016211 93 YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSM 172 (393)
Q Consensus 93 ~d~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~l~~~l~~~l 172 (393)
+-..|..+||+++++++.+++.++.+..+..|+.+. ++++...+--+ .+. ..+.+-++||=.. +++.|.+
T Consensus 67 ~t~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~~-~i~a~~G~vSl-----a~a-~~gl~sV~GGN~q-I~~~ll~-- 136 (368)
T PF07156_consen 67 LTKVTGEEYLKENGISERFINELVQAATRVNYGQNV-NIHAFAGLVSL-----AGA-TGGLWSVEGGNWQ-IFEGLLE-- 136 (368)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHhheEeeccccc-chhhhhhheee-----eec-cCCceEecCCHHH-HHHHHHH--
Confidence 467899999999999999999999999999999873 45554433221 111 2334667787544 7676654
Q ss_pred HHcCCeEecCceeeeE-EecCCCCeEEEEEeC---C-eEEecCEEEEecChhhH
Q 016211 173 RTRGCEFLDGRRVTDF-IYDEERCCISDVVCG---K-ETYSAGAVVLAVGISTL 221 (393)
Q Consensus 173 ~~~G~~i~l~~~V~~I-~~~~~~~~v~~v~~~---g-~~~~ad~VI~a~p~~~~ 221 (393)
+.|.+| ++++|++| ...+++.....|... + ..-.+|+||+|+|.+..
T Consensus 137 -~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~~ 188 (368)
T PF07156_consen 137 -ASGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQQS 188 (368)
T ss_pred -HccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCcccc
Confidence 568899 99999999 444432122234331 2 22356999999999654
No 41
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=97.47 E-value=0.013 Score=55.84 Aligned_cols=56 Identities=20% Similarity=0.203 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~~ 220 (393)
+...+.+.+++.|+++..+++|++|+..++ +++.+|.+++.++.|+.||+++..+.
T Consensus 185 l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~-~~~~~v~t~~g~i~a~~vVvaagg~~ 240 (407)
T TIGR01373 185 VAWGYARGADRRGVDIIQNCEVTGFIRRDG-GRVIGVETTRGFIGAKKVGVAVAGHS 240 (407)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCC-CcEEEEEeCCceEECCEEEECCChhh
Confidence 455677778889999999999999986533 45666777655799999999888765
No 42
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=97.44 E-value=0.00048 Score=64.11 Aligned_cols=97 Identities=22% Similarity=0.233 Sum_probs=63.5
Q ss_pred CCcccccHHHHHHHHHHHHhhccCCcceEEecCC---chhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe
Q 016211 126 APAEQCSAAATLGILYFIILAHQKNFDLVWCRGT---LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC 202 (393)
Q Consensus 126 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG---~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~ 202 (393)
.+.+-++...+...+... .......+.++.+| ... +.+.|.+.+++.|++|+.+++|++|..++ +++.+|.+
T Consensus 111 ~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~g~i~~~~-l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~--~~v~gv~~ 185 (358)
T PF01266_consen 111 IPYELLSPEELRELFPFL--NPRIEGGVFFPEGGVIDPRR-LIQALAAEAQRAGVEIRTGTEVTSIDVDG--GRVTGVRT 185 (358)
T ss_dssp TTEEEEEHHHHHHHSTTS--STTTEEEEEETTEEEEEHHH-HHHHHHHHHHHTT-EEEESEEEEEEEEET--TEEEEEEE
T ss_pred ccccccchhhhhhhhccc--ccchhhhhcccccccccccc-hhhhhHHHHHHhhhhccccccccchhhcc--cccccccc
Confidence 355666666544333211 11111223344455 344 78899999999999999999999999988 66888999
Q ss_pred CCeEEecCEEEEecChhhHHHHhhcc
Q 016211 203 GKETYSAGAVVLAVGISTLQELIKNS 228 (393)
Q Consensus 203 ~g~~~~ad~VI~a~p~~~~~~Ll~~~ 228 (393)
++++++||+||+|+.++... |+...
T Consensus 186 ~~g~i~ad~vV~a~G~~s~~-l~~~~ 210 (358)
T PF01266_consen 186 SDGEIRADRVVLAAGAWSPQ-LLPLL 210 (358)
T ss_dssp TTEEEEECEEEE--GGGHHH-HHHTT
T ss_pred cccccccceeEeccccccee-eeecc
Confidence 75569999999999987643 55543
No 43
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=0.0022 Score=58.47 Aligned_cols=158 Identities=11% Similarity=0.087 Sum_probs=102.6
Q ss_pred CCcceeccccCCCCCHhhhhcchhHHHHHhhc--CCCchhhhcccCccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCcc
Q 016211 52 TPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDF--DNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAE 129 (393)
Q Consensus 52 ~p~~~~~~~~~~~ls~~~k~~~~~~~~~~~~~--~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~ 129 (393)
.|.+-..+++.+.|+..+|-.+.+++..-... ++.+....+..++++.|||+..++++.+. .++-..+ ++ .+.+
T Consensus 177 VPcSRadvFnsk~LTivEKr~LMKFltfc~~y~tEk~~~~~~~~~e~~F~EyL~~~rltp~lq-s~vl~aI-aM--~~~~ 252 (547)
T KOG4405|consen 177 VPCSRADVFNSKSLTIVEKRMLMKFLTFCQEYLTEKDPDEYVEFRERPFSEYLKTMRLTPKLQ-SIVLHAI-AM--LSES 252 (547)
T ss_pred cCchHHhhhcccchhHHHHHHHHHHHHHHHHhhhccCcHHHHHhhcCcHHHHHHhcCCChhhH-HHHHHHH-Hh--cCcc
Confidence 35554457888899999998777655443333 22344455667899999999999999864 4432222 22 2455
Q ss_pred cccHHHHHHHHHHHH--hhccCCcceEEecCCchhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEE-EEEeCCeE
Q 016211 130 QCSAAATLGILYFII--LAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCIS-DVVCGKET 206 (393)
Q Consensus 130 ~~s~~~~~~~~~~~~--~~~~~~~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~-~v~~~g~~ 206 (393)
+.++...+...+.++ +++.+..-+.||-=|.++ +++.+.+..+=.|+---|+.+|+.|..++...++. ++...|++
T Consensus 253 ~~tt~eGm~at~~fl~slGrfgntpfLfPlYGqGE-LpQcFCRlcAVfGgIYcLr~~Vq~ivldk~s~~~~~~l~s~g~r 331 (547)
T KOG4405|consen 253 QLTTIEGMDATKNFLTSLGRFGNTPFLFPLYGQGE-LPQCFCRLCAVFGGIYCLRRPVQAIVLDKESLDCKAILDSFGQR 331 (547)
T ss_pred cccHHHHHHHHHHHHHHhhccCCCcceeeccCCCc-chHHHHHHHHHhcceEEeccchhheeecccccchhhhHhhhcch
Confidence 567666665555553 234444557888888889 89999988777888788999999999887422211 11123555
Q ss_pred EecCEEEE
Q 016211 207 YSAGAVVL 214 (393)
Q Consensus 207 ~~ad~VI~ 214 (393)
+.|+++|+
T Consensus 332 i~~k~~v~ 339 (547)
T KOG4405|consen 332 INAKNFVV 339 (547)
T ss_pred hcceeeee
Confidence 55555444
No 44
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.24 E-value=0.00051 Score=64.01 Aligned_cols=117 Identities=13% Similarity=0.047 Sum_probs=77.3
Q ss_pred ccHHHHH---HHcCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHhhc--cCCcceEEecCCchhHhHHHHHH
Q 016211 96 ITARELF---KQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAH--QKNFDLVWCRGTLREKIFEPWMD 170 (393)
Q Consensus 96 ~s~~~~l---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~--~~~~~~~~~~gG~~~~l~~~l~~ 170 (393)
.++.+|. .+. +++.+++.|+.|+....|+.+|+++++.++..+=..+.... ....-.++|++|... +.+.|.
T Consensus 129 ~~~~e~~d~~~~~-~G~~lye~ff~~Yt~K~Wg~~p~el~~~~~~RvP~~~~~d~~yf~d~~q~~P~~Gyt~-~~~~ml- 205 (377)
T TIGR00031 129 EELQEIADPDIQL-LYQFLYQKVYKPYTVKQWGLPAEEIDPFVIGRVPVVLSEDSSYFPDRYQGLPKGGYTK-LFEKML- 205 (377)
T ss_pred CCHHHHHHHHHHH-HHHHHHHHhccccCceeeCCChHHCCHHHeEecceEecCCCCcccccccccccccHHH-HHHHHH-
Confidence 4455554 664 89999999999999999999999999987652211110000 001235789999554 555554
Q ss_pred HHHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChhhHHH
Q 016211 171 SMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE 223 (393)
Q Consensus 171 ~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~~~~~ 223 (393)
...+.+|+||+.+..+..++ +++ ..+++.+. +.||.|.|.+.+-.
T Consensus 206 --~~~~i~v~l~~~~~~~~~~~--~~~---~~~~~~~~-~~vi~Tg~id~~f~ 250 (377)
T TIGR00031 206 --DHPLIDVKLNCHINLLKDKD--SQL---HFANKAIR-KPVIYTGLIDQLFG 250 (377)
T ss_pred --hcCCCEEEeCCccceeeccc--cce---eecccccc-CcEEEecCchHHHh
Confidence 33467999999888887544 223 33333333 88999999887654
No 45
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.10 E-value=0.0023 Score=60.48 Aligned_cols=65 Identities=22% Similarity=0.276 Sum_probs=45.4
Q ss_pred eEEecCCchhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChh
Q 016211 153 LVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (393)
Q Consensus 153 ~~~~~gG~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~ 219 (393)
..||.-.....+.+.|.+.+++.|++|+++++|.+|+.++ +.+..|.+ +++++.||.||+|+...
T Consensus 100 r~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~--~~~f~v~~~~~~~~~a~~vILAtGG~ 165 (409)
T PF03486_consen 100 RVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKE--DGVFGVKTKNGGEYEADAVILATGGK 165 (409)
T ss_dssp EEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEET--TEEEEEEETTTEEEEESEEEE----S
T ss_pred EECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecC--CceeEeeccCcccccCCEEEEecCCC
Confidence 3666543333488999999999999999999999999887 45667888 78999999999997753
No 46
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=96.98 E-value=0.0031 Score=57.80 Aligned_cols=61 Identities=16% Similarity=0.262 Sum_probs=49.8
Q ss_pred eEEec-CCchhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecC
Q 016211 153 LVWCR-GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVG 217 (393)
Q Consensus 153 ~~~~~-gG~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p 217 (393)
-.+|+ ..-+. |++.|.+.+++.|++|+++++|.+|+.+++ .. .+.+ +|+++.||.+|+|+.
T Consensus 102 r~Fp~sdkA~~-Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~--~f-~l~t~~g~~i~~d~lilAtG 164 (408)
T COG2081 102 RMFPDSDKASP-IVDALLKELEALGVTIRTRSRVSSVEKDDS--GF-RLDTSSGETVKCDSLILATG 164 (408)
T ss_pred eecCCccchHH-HHHHHHHHHHHcCcEEEecceEEeEEecCc--eE-EEEcCCCCEEEccEEEEecC
Confidence 35566 45455 889999999999999999999999999873 23 4666 466899999999988
No 47
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=96.88 E-value=0.014 Score=55.33 Aligned_cols=140 Identities=16% Similarity=0.144 Sum_probs=87.3
Q ss_pred CCCHhhhhcchhHHHHHhhcCCCchhhhcccCccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHH
Q 016211 64 RLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFI 143 (393)
Q Consensus 64 ~ls~~~k~~~~~~~~~~~~~~~~~~~~~~~d~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~ 143 (393)
.|+..+++.+++++.. .+ +.+++.++.||+...++...+. .+|. ..|+-.+- -||..+..+++++
T Consensus 121 ~Ls~k~r~eL~kL~l~------~E---~~L~~~~I~d~F~~~FF~SnFW-~~W~----T~FAFqpW-hSa~E~rRyl~Rf 185 (500)
T PF06100_consen 121 GLSEKDRMELIKLLLT------PE---EDLGDKRIEDWFSESFFESNFW-YMWS----TMFAFQPW-HSAVEFRRYLHRF 185 (500)
T ss_pred CCCHHHHHHHHHHhcC------CH---HHhCcccHHHhcchhhhcCchh-HhHH----HhhccCcc-hhHHHHHHHHHHH
Confidence 4677777776665432 11 2478999999998865554443 2333 23443433 4888888888887
Q ss_pred HhhccCC----cceEEecCCchhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCC--eEEEEEe--CCe--EE---ecC
Q 016211 144 ILAHQKN----FDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERC--CISDVVC--GKE--TY---SAG 210 (393)
Q Consensus 144 ~~~~~~~----~~~~~~~gG~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~--~v~~v~~--~g~--~~---~ad 210 (393)
+ ..-.+ +.+...+=.+.+.++.+|.+.|+++|+++++|+.|+.|+.+.+++ .+..+.+ +|+ ++ .-|
T Consensus 186 ~-h~~~~l~~l~~l~~T~YNQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~D 264 (500)
T PF06100_consen 186 I-HEIPGLNDLSGLDRTKYNQYESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDD 264 (500)
T ss_pred H-HhcCCCCCccccccCccccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCC
Confidence 4 22111 112222324455588999999999999999999999999864322 2444443 442 22 347
Q ss_pred EEEEecChh
Q 016211 211 AVVLAVGIS 219 (393)
Q Consensus 211 ~VI~a~p~~ 219 (393)
.|+++...-
T Consensus 265 lV~vT~GS~ 273 (500)
T PF06100_consen 265 LVFVTNGSM 273 (500)
T ss_pred EEEEECCcc
Confidence 888876543
No 48
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.80 E-value=0.0052 Score=57.83 Aligned_cols=65 Identities=18% Similarity=0.192 Sum_probs=53.7
Q ss_pred hhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CC--eEEecCEEEEecChhhHHHHhhc
Q 016211 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK--ETYSAGAVVLAVGISTLQELIKN 227 (393)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g--~~~~ad~VI~a~p~~~~~~Ll~~ 227 (393)
+.++.++|.+.+++.|+++..++.|.++..++ +++.+|.+ ++ .+++||+||+|+..+....|+..
T Consensus 262 G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~--~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~ 329 (419)
T TIGR03378 262 GIRLEEALKHRFEQLGGVMLPGDRVLRAEFEG--NRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAE 329 (419)
T ss_pred HHHHHHHHHHHHHHCCCEEEECcEEEEEEeeC--CeEEEEEecCCccceEECCEEEEccCCCcCHHHHhh
Confidence 44588899999999999999999999999887 56877776 33 47999999999999866666554
No 49
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=96.75 E-value=0.0058 Score=56.87 Aligned_cols=57 Identities=23% Similarity=0.180 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhhHH
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQ 222 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~~~ 222 (393)
+++.|.+.|++.|++|+++|.|..|+.++ +.+.+|.+ +|+++.+|+||+|+......
T Consensus 175 vvkni~~~l~~~G~ei~f~t~VeDi~~~~--~~~~~v~~~~g~~i~~~~vvlA~Grsg~d 232 (486)
T COG2509 175 VVKNIREYLESLGGEIRFNTEVEDIEIED--NEVLGVKLTKGEEIEADYVVLAPGRSGRD 232 (486)
T ss_pred HHHHHHHHHHhcCcEEEeeeEEEEEEecC--CceEEEEccCCcEEecCEEEEccCcchHH
Confidence 56788889999999999999999999987 45666776 68899999999999876543
No 50
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=96.38 E-value=0.013 Score=55.32 Aligned_cols=56 Identities=16% Similarity=0.143 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeE-EecCEEEEecChhhH
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKET-YSAGAVVLAVGISTL 221 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~-~~ad~VI~a~p~~~~ 221 (393)
+..++++.++++|++|++|++|+.|+..+| | +..+.+ +|++ ++|+.||.+.+....
T Consensus 155 ~t~~l~e~a~~~g~~i~ln~eV~~i~~~~d-g-~~~~~~~~g~~~~~ak~Vin~AGl~Ad 212 (429)
T COG0579 155 LTRALAEEAQANGVELRLNTEVTGIEKQSD-G-VFVLNTSNGEETLEAKFVINAAGLYAD 212 (429)
T ss_pred HHHHHHHHHHHcCCEEEecCeeeEEEEeCC-c-eEEEEecCCcEEEEeeEEEECCchhHH
Confidence 667889999999999999999999999886 3 444555 5655 999999999988763
No 51
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=96.35 E-value=0.017 Score=55.54 Aligned_cols=64 Identities=19% Similarity=0.149 Sum_probs=49.4
Q ss_pred EecCCchhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeC--CeEEecCEEEEecChh
Q 016211 155 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KETYSAGAVVLAVGIS 219 (393)
Q Consensus 155 ~~~gG~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~--g~~~~ad~VI~a~p~~ 219 (393)
++.++... +.+.|.+.+++.|++|+++++|++|..+++++++.+|... +.++.|+.||+|+...
T Consensus 117 ~~~~~g~~-l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~ 182 (432)
T TIGR02485 117 FLRGGGKA-LTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGL 182 (432)
T ss_pred eecCCHHH-HHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCc
Confidence 34444445 7789999999999999999999999886311567777652 4579999999999854
No 52
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=96.24 E-value=0.32 Score=49.10 Aligned_cols=57 Identities=21% Similarity=0.126 Sum_probs=45.7
Q ss_pred HhHHHHHHHHHHcCCeEecCceeeeEEecC-CCCeEEEEEe----CCe--EEecCEEEEecChhh
Q 016211 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDE-ERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (393)
Q Consensus 163 ~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~-~~~~v~~v~~----~g~--~~~ad~VI~a~p~~~ 220 (393)
++...+++.+++.|++|+.+++|++|..++ + +++++|++ +|+ ++.||.||.|+.++.
T Consensus 233 rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~-g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws 296 (627)
T PLN02464 233 RLNVALACTAALAGAAVLNYAEVVSLIKDEST-GRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC 296 (627)
T ss_pred HHHHHHHHHHHhCCcEEEeccEEEEEEEecCC-CcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence 466778888888999999999999998763 2 45666654 343 589999999999986
No 53
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=96.15 E-value=0.02 Score=55.71 Aligned_cols=56 Identities=14% Similarity=0.163 Sum_probs=45.7
Q ss_pred hHHHHHHHHHH----cC--CeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChhhH
Q 016211 164 IFEPWMDSMRT----RG--CEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 221 (393)
Q Consensus 164 l~~~l~~~l~~----~G--~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~~~ 221 (393)
+.+.+.+.+++ .| ++|+++++|++|..+++ +++.|.++.+++.||.||+|+.++..
T Consensus 213 L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~--~~~~V~T~~G~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 213 LSESFVKHARRDALVPGKKISINLNTEVLNIERSND--SLYKIHTNRGEIRARFVVVSACGYSL 274 (497)
T ss_pred HHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCC--CeEEEEECCCEEEeCEEEECcChhHH
Confidence 67888888888 77 67999999999998753 35557776557999999999998864
No 54
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=96.02 E-value=0.027 Score=54.69 Aligned_cols=60 Identities=27% Similarity=0.227 Sum_probs=47.5
Q ss_pred cCCchhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeC---C--eEEecCEEEEecChh
Q 016211 157 RGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---K--ETYSAGAVVLAVGIS 219 (393)
Q Consensus 157 ~gG~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~---g--~~~~ad~VI~a~p~~ 219 (393)
.++... +.+.|.+.+++.|++|+++++|++|..++ +++++|.+. | .++.|+.||+|+...
T Consensus 127 ~g~g~~-l~~~l~~~~~~~gv~i~~~t~v~~l~~~~--g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~ 191 (466)
T PRK08274 127 WGGGKA-LVNALYRSAERLGVEIRYDAPVTALELDD--GRFVGARAGSAAGGAERIRAKAVVLAAGGF 191 (466)
T ss_pred cCCHHH-HHHHHHHHHHHCCCEEEcCCEEEEEEecC--CeEEEEEEEccCCceEEEECCEEEECCCCC
Confidence 344334 77889998999999999999999999865 678887762 2 468999999999753
No 55
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=95.99 E-value=0.08 Score=49.43 Aligned_cols=63 Identities=22% Similarity=0.384 Sum_probs=47.6
Q ss_pred eEEecCCchhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe--CCeEEecCEEEEecChhh
Q 016211 153 LVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKETYSAGAVVLAVGIST 220 (393)
Q Consensus 153 ~~~~~gG~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~~~~ad~VI~a~p~~~ 220 (393)
..||.-....-+++.|...+++.|++|+++++|++| ++ ++. .+.+ ++++++||+||+|+.-..
T Consensus 77 rvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~--~~~-~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 77 RVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QG--GTL-RFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eC--CcE-EEEECCCceEEecCEEEEcCCCcc
Confidence 466654434448899999999999999999999999 33 223 4665 335799999999998754
No 56
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=95.87 E-value=0.025 Score=54.90 Aligned_cols=53 Identities=17% Similarity=0.053 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~~ 220 (393)
+++.|.+.+++.|++|+.+++|++|+.. +.+ .|.++++++.||+||+|+.++.
T Consensus 185 l~~~L~~~a~~~Gv~i~~~t~V~~i~~~---~~~-~v~t~~g~v~A~~VV~Atga~s 237 (460)
T TIGR03329 185 LVRGLRRVALELGVEIHENTPMTGLEEG---QPA-VVRTPDGQVTADKVVLALNAWM 237 (460)
T ss_pred HHHHHHHHHHHcCCEEECCCeEEEEeeC---Cce-EEEeCCcEEECCEEEEcccccc
Confidence 6688888888899999999999999852 223 4677655799999999998765
No 57
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=95.83 E-value=0.032 Score=53.34 Aligned_cols=57 Identities=28% Similarity=0.324 Sum_probs=45.0
Q ss_pred HhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe----CCe--EEecCEEEEecChhhH
Q 016211 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGISTL 221 (393)
Q Consensus 163 ~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VI~a~p~~~~ 221 (393)
.+.+.+.+.+++.|++|+++++|++|..++ ++|++|.. +|+ ++.|++||+|+.-...
T Consensus 142 ~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~--g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 142 ALIEALAKAAEEAGVDIRFNTRVTDLITED--GRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHTTEEEEESEEEEEEEEET--TEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHhhcCeeeeccceeeeEEEeC--CceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 377899999999999999999999999987 68998876 354 5789999999887654
No 58
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=95.76 E-value=0.02 Score=54.11 Aligned_cols=54 Identities=17% Similarity=0.107 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhhH
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL 221 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~~ 221 (393)
+.+.|.+.+++ |++|+.+++|++|+.++ +++ .|++ +|+++.||+||+|+.++..
T Consensus 137 ~~~~l~~~~~~-G~~i~~~~~V~~i~~~~--~~~-~v~t~~g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 137 LCRALLAHAGI-RLTLHFNTEITSLERDG--EGW-QLLDANGEVIAASVVVLANGAQAG 191 (381)
T ss_pred HHHHHHhccCC-CcEEEeCCEEEEEEEcC--CeE-EEEeCCCCEEEcCEEEEcCCcccc
Confidence 66778887877 99999999999999876 444 4666 4666899999999998863
No 59
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=95.73 E-value=0.039 Score=54.36 Aligned_cols=56 Identities=20% Similarity=0.246 Sum_probs=45.9
Q ss_pred HhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe----CC--eEEecCEEEEecChhh
Q 016211 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIST 220 (393)
Q Consensus 163 ~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g--~~~~ad~VI~a~p~~~ 220 (393)
.++..+++.+++.|++|+.+++|++|..++ +++++|++ +| .++.|+.||.|+.++.
T Consensus 129 ~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~--~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa 190 (516)
T TIGR03377 129 RLVAANVLDAQEHGARIFTYTKVTGLIREG--GRVTGVKVEDHKTGEEERIEAQVVINAAGIWA 190 (516)
T ss_pred HHHHHHHHHHHHcCCEEEcCcEEEEEEEEC--CEEEEEEEEEcCCCcEEEEEcCEEEECCCcch
Confidence 366777888888999999999999999876 56766665 24 3689999999999986
No 60
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=95.70 E-value=0.04 Score=51.91 Aligned_cols=54 Identities=22% Similarity=0.335 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~~ 220 (393)
+.+.+.+.+++.|++++.+++|++|..++ +.+. |+++++++.||.||+|+..+.
T Consensus 147 ~~~~l~~~~~~~g~~~~~~~~V~~i~~~~--~~~~-v~~~~~~i~a~~vV~aaG~~~ 200 (380)
T TIGR01377 147 ALRALQELAEAHGATVRDGTKVVEIEPTE--LLVT-VKTTKGSYQANKLVVTAGAWT 200 (380)
T ss_pred HHHHHHHHHHHcCCEEECCCeEEEEEecC--CeEE-EEeCCCEEEeCEEEEecCcch
Confidence 56777777888899999999999999876 4454 666655799999999999864
No 61
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=95.62 E-value=0.031 Score=47.45 Aligned_cols=53 Identities=25% Similarity=0.196 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeC-CeEEecCEEEEecChh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS 219 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~-g~~~~ad~VI~a~p~~ 219 (393)
+.+-+.+.+++.+.+|++++.|++|..+++ ++ .|++. +++++||+||+|+...
T Consensus 84 v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~--~w-~v~~~~~~~~~a~~VVlAtG~~ 137 (203)
T PF13738_consen 84 VLDYLQEYAERFGLEIRFNTRVESVRRDGD--GW-TVTTRDGRTIRADRVVLATGHY 137 (203)
T ss_dssp HHHHHHHHHHHTTGGEETS--EEEEEEETT--TE-EEEETTS-EEEEEEEEE---SS
T ss_pred HHHHHHHHHhhcCcccccCCEEEEEEEecc--EE-EEEEEecceeeeeeEEEeeecc
Confidence 445555556677888999999999999974 34 47774 5689999999999953
No 62
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=95.62 E-value=0.041 Score=52.17 Aligned_cols=54 Identities=20% Similarity=0.265 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~~ 220 (393)
+.+.|.+.+++.|++|+++++|.+|..++ +++ .|.++++++.||.||+|++.+.
T Consensus 151 l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~--~~~-~V~~~~g~i~ad~vV~A~G~~s 204 (393)
T PRK11728 151 VAEAMAELIQARGGEIRLGAEVTALDEHA--NGV-VVRTTQGEYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHHHhCCCEEEcCCEEEEEEecC--CeE-EEEECCCEEEeCEEEECCCcch
Confidence 77888888888999999999999998776 445 4666655799999999999875
No 63
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.61 E-value=0.043 Score=54.50 Aligned_cols=62 Identities=18% Similarity=0.170 Sum_probs=48.1
Q ss_pred ecCCchhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe--CCe--EEec-CEEEEecChhhH
Q 016211 156 CRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSA-GAVVLAVGISTL 221 (393)
Q Consensus 156 ~~gG~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~--~~~a-d~VI~a~p~~~~ 221 (393)
..+| .. +.++|.+.+++.|++|+++++|++|..++ |+|.+|.. +|+ .+.| +.||+|+.-...
T Consensus 213 ~~~G-~~-l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~--g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~ 279 (564)
T PRK12845 213 AAGG-QA-LAAGLFAGVLRAGIPIWTETSLVRLTDDG--GRVTGAVVDHRGREVTVTARRGVVLAAGGFDH 279 (564)
T ss_pred cCCh-HH-HHHHHHHHHHHCCCEEEecCEeeEEEecC--CEEEEEEEEECCcEEEEEcCCEEEEecCCccc
Confidence 3455 55 78899999999999999999999999764 68988865 343 3556 589999887653
No 64
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.59 E-value=0.42 Score=46.43 Aligned_cols=68 Identities=21% Similarity=0.200 Sum_probs=51.0
Q ss_pred ceEEecCCchh-HhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeC----Ce--EEecCEEEEecChhhHH
Q 016211 152 DLVWCRGTLRE-KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGISTLQ 222 (393)
Q Consensus 152 ~~~~~~gG~~~-~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~----g~--~~~ad~VI~a~p~~~~~ 222 (393)
.+.|+++-... +++-..+..+.++|.+|...++|+++..++ + +++|.+. |+ +++|+.||-|+.|+.-.
T Consensus 153 a~~y~D~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re~--~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~ 227 (532)
T COG0578 153 AFRYPDGVVDDARLVAANARDAAEHGAEILTYTRVESLRREG--G-VWGVEVEDRETGETYEIRARAVVNAAGPWVDE 227 (532)
T ss_pred eEEEccceechHHHHHHHHHHHHhcccchhhcceeeeeeecC--C-EEEEEEEecCCCcEEEEEcCEEEECCCccHHH
Confidence 45666543322 355555666778899999999999999987 6 8888872 43 48999999999999743
No 65
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=95.47 E-value=0.063 Score=53.22 Aligned_cols=92 Identities=20% Similarity=0.090 Sum_probs=58.6
Q ss_pred CCCcccccHHHHHHHHHHHHhhccCCcceEEecCCch-hHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-
Q 016211 125 FAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLR-EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC- 202 (393)
Q Consensus 125 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~-~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~- 202 (393)
+.+.+.++...+....-.+ +..-...+.++.|-.. .++..++++.++++|++|+.+++|++|..++ +++++|++
T Consensus 113 Gi~~~~l~~~e~~~~eP~l--~~~~~ga~~~~dg~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~--~~v~gv~v~ 188 (546)
T PRK11101 113 GIEAEAIDPQQALILEPAV--NPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREG--DTVCGVRVR 188 (546)
T ss_pred CCCcEEECHHHHHHhCCCc--CccceEEEEecCcEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcC--CeEEEEEEE
Confidence 4455556665554332211 1111122344543222 2355667777788899999999999999876 56777765
Q ss_pred ---CC--eEEecCEEEEecChhh
Q 016211 203 ---GK--ETYSAGAVVLAVGIST 220 (393)
Q Consensus 203 ---~g--~~~~ad~VI~a~p~~~ 220 (393)
+| .+++||.||.|+.++.
T Consensus 189 d~~~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 189 DHLTGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred EcCCCcEEEEECCEEEECCChhH
Confidence 23 4789999999999986
No 66
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=95.47 E-value=0.06 Score=51.68 Aligned_cols=55 Identities=20% Similarity=0.338 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~~ 220 (393)
+-+.|.+.+++.|++|+.+++|++|..++ +++.+++++|++++||.||.|...+.
T Consensus 110 fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~--g~v~~v~~~g~~i~A~~VI~A~G~~s 164 (428)
T PRK10157 110 FDAWLMEQAEEAGAQLITGIRVDNLVQRD--GKVVGVEADGDVIEAKTVILADGVNS 164 (428)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEEeC--CEEEEEEcCCcEEECCEEEEEeCCCH
Confidence 44456777778899999999999998876 55666666788899999999998754
No 67
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=95.42 E-value=0.073 Score=50.58 Aligned_cols=63 Identities=21% Similarity=0.328 Sum_probs=48.4
Q ss_pred EEecCCchhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChh
Q 016211 154 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (393)
Q Consensus 154 ~~~~gG~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~ 219 (393)
.|+.......+.+.+.+.+++.|++|+++++|++|..++ +.+ .|.++++++.||.||+|+...
T Consensus 97 ~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~--~~~-~v~~~~~~i~ad~VIlAtG~~ 159 (400)
T TIGR00275 97 VFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDD--NGF-GVETSGGEYEADKVILATGGL 159 (400)
T ss_pred eECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC--CeE-EEEECCcEEEcCEEEECCCCc
Confidence 344333333478889999999999999999999998765 333 466677789999999999974
No 68
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.31 E-value=0.073 Score=52.90 Aligned_cols=58 Identities=17% Similarity=0.227 Sum_probs=46.9
Q ss_pred hHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe--CCe--EEecC-EEEEecChhhH
Q 016211 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAG-AVVLAVGISTL 221 (393)
Q Consensus 162 ~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~--~~~ad-~VI~a~p~~~~ 221 (393)
..+.+.|.+.+++.|++|+++++|++|+.++ ++|.+|.. +|+ ++.|+ .||+|+.--..
T Consensus 208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~--g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~ 270 (557)
T PRK12844 208 AALIGRMLEAALAAGVPLWTNTPLTELIVED--GRVVGVVVVRDGREVLIRARRGVLLASGGFGH 270 (557)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC--CEEEEEEEEECCeEEEEEecceEEEecCCccC
Confidence 3477889999999999999999999999876 67988876 453 47784 79999887653
No 69
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=95.29 E-value=0.062 Score=53.71 Aligned_cols=55 Identities=16% Similarity=0.231 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe--CCe--EEec-CEEEEecChhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSA-GAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~--~~~a-d~VI~a~p~~~ 220 (393)
+++.|.+.+++.|++|+++++|++|+.++ +++.+|.+ +++ ++.| +.||+|+....
T Consensus 219 l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~--g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 278 (581)
T PRK06134 219 LVARLLKSAEDLGVRIWESAPARELLRED--GRVAGAVVETPGGLQEIRARKGVVLAAGGFP 278 (581)
T ss_pred HHHHHHHHHHhCCCEEEcCCEEEEEEEeC--CEEEEEEEEECCcEEEEEeCCEEEEcCCCcc
Confidence 77889999999999999999999999875 67877765 333 5788 99999998875
No 70
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=95.20 E-value=0.11 Score=51.82 Aligned_cols=59 Identities=20% Similarity=0.234 Sum_probs=47.9
Q ss_pred chhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe----CCe--EEecCEEEEecChhh
Q 016211 160 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (393)
Q Consensus 160 ~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VI~a~p~~~ 220 (393)
.+..+.+.|.+.+++.|++|..+++|++|..++ |+|.||.. +|+ .+.|++||+|+.-..
T Consensus 117 ~G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~--g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~ 181 (565)
T TIGR01816 117 TGHAILHTLYQQNLKADTSFFNEYFALDLLMED--GECRGVIAYCLETGEIHRFRAKAVVLATGGYG 181 (565)
T ss_pred chHHHHHHHHHHHHhCCCEEEeccEEEEEEeeC--CEEEEEEEEEcCCCcEEEEEeCeEEECCCCcc
Confidence 344477889888888899999999999999875 68888865 353 578999999998764
No 71
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=95.13 E-value=0.083 Score=46.79 Aligned_cols=56 Identities=27% Similarity=0.276 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeC------------CeEEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG------------KETYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~------------g~~~~ad~VI~a~p~~~ 220 (393)
+.+.|.+.+++.|++|++++.|.+|..+++ +++.+|.++ ..+++|+.||.|+..+.
T Consensus 106 l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~-g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a 173 (257)
T PRK04176 106 AAAKLAAAAIDAGAKIFNGVSVEDVILRED-PRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA 173 (257)
T ss_pred HHHHHHHHHHHcCCEEEcCceeceeeEeCC-CcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence 677888888889999999999999998664 367776652 14789999999998765
No 72
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=95.11 E-value=0.082 Score=50.42 Aligned_cols=56 Identities=20% Similarity=0.191 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeC-C----eEEecCEEEEecChhhH
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-K----ETYSAGAVVLAVGISTL 221 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~-g----~~~~ad~VI~a~p~~~~ 221 (393)
+...+.+.+++.|++|+.+++|++|..++ +.+...+.+ + .+++||+||+|+.++..
T Consensus 199 ~~~~l~~~a~~~G~~i~~~~~V~~i~~~~--~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~ 259 (410)
T PRK12409 199 FTTGLAAACARLGVQFRYGQEVTSIKTDG--GGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSR 259 (410)
T ss_pred HHHHHHHHHHhCCCEEEcCCEEEEEEEeC--CEEEEEEEcCCCCccceEecCEEEECCCcChH
Confidence 56777888888999999999999998766 445422222 2 36899999999999863
No 73
>PRK10015 oxidoreductase; Provisional
Probab=95.09 E-value=0.096 Score=50.25 Aligned_cols=55 Identities=24% Similarity=0.430 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~~ 220 (393)
+-+.|.+.+++.|++|+.+++|+.|..++ +++.+|.+++++++||.||.|.....
T Consensus 110 fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~--~~v~~v~~~~~~i~A~~VI~AdG~~s 164 (429)
T PRK10015 110 LDPWLMEQAEQAGAQFIPGVRVDALVREG--NKVTGVQAGDDILEANVVILADGVNS 164 (429)
T ss_pred HHHHHHHHHHHcCCEEECCcEEEEEEEeC--CEEEEEEeCCeEEECCEEEEccCcch
Confidence 33446677778899999999999998776 46776777777899999999988754
No 74
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=95.03 E-value=0.084 Score=49.63 Aligned_cols=59 Identities=24% Similarity=0.296 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChhhHHHHhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIK 226 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~~~~~Ll~ 226 (393)
+...+.+.+.+.|++|+.+++|++|..++ +.+ .|.+++.++.||.||+|+.++.. .+++
T Consensus 151 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~--~~~-~v~~~~g~~~a~~vV~A~G~~~~-~l~~ 209 (376)
T PRK11259 151 AIKAHLRLAREAGAELLFNEPVTAIEADG--DGV-TVTTADGTYEAKKLVVSAGAWVK-DLLP 209 (376)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEeeC--CeE-EEEeCCCEEEeeEEEEecCcchh-hhcc
Confidence 45566666777899999999999999876 445 36675557999999999998753 3444
No 75
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=94.99 E-value=0.09 Score=50.66 Aligned_cols=57 Identities=30% Similarity=0.343 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe---CCe--EEecCEEEEecChhhH
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GKE--TYSAGAVVLAVGISTL 221 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g~--~~~ad~VI~a~p~~~~ 221 (393)
+.+.|.+.+++.|++|+++++|++|+.+++ +++.+|++ +++ .+.++.||+|+.....
T Consensus 132 l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~-g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 132 IVQKLYKKAKKEGIDTRLNSKVEDLIQDDQ-GTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred HHHHHHHHHHHcCCEEEeCCEeeEeEECCC-CcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence 778888889999999999999999998654 56777765 243 4789999999886553
No 76
>PRK06175 L-aspartate oxidase; Provisional
Probab=94.96 E-value=0.14 Score=49.27 Aligned_cols=56 Identities=13% Similarity=0.283 Sum_probs=43.6
Q ss_pred hHhHHHHHHHHHH-cCCeEecCceeeeEEecCCCCeEEEEEe--CCe--EEecCEEEEecChh
Q 016211 162 EKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGIS 219 (393)
Q Consensus 162 ~~l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~--~~~ad~VI~a~p~~ 219 (393)
..+.+.|.+.+++ .|++|+++++|++|..++ +++.+|.. +++ ++.|+.||+|+...
T Consensus 128 ~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~--~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~ 188 (433)
T PRK06175 128 KKVEKILLKKVKKRKNITIIENCYLVDIIEND--NTCIGAICLKDNKQINIYSKVTILATGGI 188 (433)
T ss_pred HHHHHHHHHHHHhcCCCEEEECcEeeeeEecC--CEEEEEEEEECCcEEEEEcCeEEEccCcc
Confidence 3367888877765 489999999999998765 56777653 443 58999999999873
No 77
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=94.93 E-value=0.12 Score=49.24 Aligned_cols=60 Identities=17% Similarity=0.169 Sum_probs=46.7
Q ss_pred HhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CC--eEEecCEEEEecChhhHHHH
Q 016211 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK--ETYSAGAVVLAVGISTLQEL 224 (393)
Q Consensus 163 ~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g--~~~~ad~VI~a~p~~~~~~L 224 (393)
.+.+.+.+.+++.|++|+++++|.++..++ +++..+.. +| .+++||.||+|+....-..|
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~--~~V~~v~~~~g~~~~i~AD~VVLAtGrf~s~GL 322 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFEG--GRVTAVWTRNHGDIPLRARHFVLATGSFFSGGL 322 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEeC--CEEEEEEeeCCceEEEECCEEEEeCCCcccCce
Confidence 377889999999999999999999999876 45665544 44 45899999999887543344
No 78
>PRK07121 hypothetical protein; Validated
Probab=94.89 E-value=0.099 Score=51.20 Aligned_cols=57 Identities=23% Similarity=0.254 Sum_probs=46.6
Q ss_pred HhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe--CC--eEEec-CEEEEecChhh
Q 016211 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GK--ETYSA-GAVVLAVGIST 220 (393)
Q Consensus 163 ~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g--~~~~a-d~VI~a~p~~~ 220 (393)
.+.+.|.+.+++.|++|+++++|++|..+++ |++.+|.. ++ .++.| +.||+|+....
T Consensus 178 ~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~-g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~ 239 (492)
T PRK07121 178 MLMDPLAKRAAALGVQIRYDTRATRLIVDDD-GRVVGVEARRYGETVAIRARKGVVLAAGGFA 239 (492)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEECCC-CCEEEEEEEeCCcEEEEEeCCEEEECCCCcC
Confidence 3778899999999999999999999998754 57888876 33 25788 99999998755
No 79
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=94.87 E-value=0.11 Score=51.86 Aligned_cols=56 Identities=18% Similarity=0.229 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe--CCe--EEecC-EEEEecChhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAG-AVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~--~~~ad-~VI~a~p~~~ 220 (393)
+...|.+.+++.|++|+++++|++|..+++ |+|.+|.. +|+ ++.|+ .||+|+....
T Consensus 215 ~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~-g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~ 275 (584)
T PRK12835 215 LVARLRLALKDAGVPLWLDSPMTELITDPD-GAVVGAVVEREGRTLRIGARRGVILATGGFD 275 (584)
T ss_pred HHHHHHHHHHhCCceEEeCCEEEEEEECCC-CcEEEEEEEeCCcEEEEEeceeEEEecCccc
Confidence 667788888888999999999999999755 67988876 343 47787 6999988765
No 80
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=94.80 E-value=0.1 Score=51.24 Aligned_cols=55 Identities=22% Similarity=0.279 Sum_probs=44.9
Q ss_pred HhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe---CC--eEEecCEEEEecChh
Q 016211 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK--ETYSAGAVVLAVGIS 219 (393)
Q Consensus 163 ~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g--~~~~ad~VI~a~p~~ 219 (393)
.+.+.|.+.+++.|++|+++++|++|..++ ++|.+|.+ ++ .++.|+.||+|+...
T Consensus 191 ~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~--g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~ 250 (506)
T PRK06481 191 YLVDGLLKNVQERKIPLFVNADVTKITEKD--GKVTGVKVKINGKETKTISSKAVVVTTGGF 250 (506)
T ss_pred HHHHHHHHHHHHcCCeEEeCCeeEEEEecC--CEEEEEEEEeCCCeEEEEecCeEEEeCCCc
Confidence 377889888999999999999999998765 67877766 23 368999999999754
No 81
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=94.74 E-value=0.12 Score=50.22 Aligned_cols=55 Identities=13% Similarity=0.167 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe----CC--eEEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g--~~~~ad~VI~a~p~~~ 220 (393)
+.+++.+.+++.|++|+++++|++|+.+++ +.+. |.+ +| .+++||.||+|+..+.
T Consensus 180 l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~-~~v~-v~~~~~~~g~~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 180 LTKQLLGYLVQNGTTIRFGHEVRNLKRQSD-GSWT-VTVKNTRTGGKRTLNTRFVFVGAGGGA 240 (483)
T ss_pred HHHHHHHHHHhCCCEEEeCCEEEEEEEcCC-CeEE-EEEeeccCCceEEEECCEEEECCCcch
Confidence 678888888888999999999999998653 3343 332 23 3689999999999876
No 82
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.65 E-value=0.17 Score=50.77 Aligned_cols=59 Identities=24% Similarity=0.244 Sum_probs=47.3
Q ss_pred hhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe----CCe--EEecCEEEEecChhh
Q 016211 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (393)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VI~a~p~~~ 220 (393)
+..+.+.|.+.+++.|++|..+++|++|..+++ |+|.||.. +|+ .+.|++||+|+.-..
T Consensus 148 G~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 212 (598)
T PRK09078 148 GHAILHTLYQQSLKHNAEFFIEYFALDLIMDDG-GVCRGVVAWNLDDGTLHRFRAHMVVLATGGYG 212 (598)
T ss_pred HHHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCC-CEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence 334778888888888999999999999998754 57888864 343 688999999998764
No 83
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.65 E-value=0.19 Score=50.18 Aligned_cols=59 Identities=19% Similarity=0.290 Sum_probs=47.8
Q ss_pred hhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe----CCe--EEecCEEEEecChhh
Q 016211 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (393)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VI~a~p~~~ 220 (393)
+..|.+.|.+.+++.|++|..+++++++..+++ |+|.||.. +|+ .+.|++||+|+.-..
T Consensus 125 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 189 (570)
T PRK05675 125 GHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQD-GAVVGVIAICIETGETVYIKSKATVLATGGAG 189 (570)
T ss_pred HHHHHHHHHHHHhccCCEEEECcEEEEEEEcCC-CeEEEEEEEEcCCCcEEEEecCeEEECCCCcc
Confidence 344778888888888999999999999998644 68888875 343 578999999998865
No 84
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=94.62 E-value=0.18 Score=44.56 Aligned_cols=63 Identities=19% Similarity=0.281 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeC------------CeEEecCEEEEecChhh-HHHHhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG------------KETYSAGAVVLAVGIST-LQELIK 226 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~------------g~~~~ad~VI~a~p~~~-~~~Ll~ 226 (393)
+.+.|.+.+.+.|++|+.++.|.+|..++++.++.+|.++ ..+++|+.||.|++... +.+++.
T Consensus 102 l~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l~ 177 (254)
T TIGR00292 102 FISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVCA 177 (254)
T ss_pred HHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHHH
Confidence 6677888888889999999999999987742257787763 14689999999999654 344433
No 85
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=94.59 E-value=0.13 Score=51.12 Aligned_cols=59 Identities=19% Similarity=0.178 Sum_probs=45.9
Q ss_pred hhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe--CCe--EEecC-EEEEecChhhH
Q 016211 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAG-AVVLAVGISTL 221 (393)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~--~~~ad-~VI~a~p~~~~ 221 (393)
+..+...|.+.+++.|++|+++++|++|..++ ++|.+|.. +|+ ++.|+ .||+|+.--..
T Consensus 207 g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~--g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~ 270 (557)
T PRK07843 207 GQALAAGLRIGLQRAGVPVLLNTPLTDLYVED--GRVTGVHAAESGEPQLIRARRGVILASGGFEH 270 (557)
T ss_pred cHHHHHHHHHHHHcCCCEEEeCCEEEEEEEeC--CEEEEEEEEeCCcEEEEEeceeEEEccCCcCc
Confidence 33477888888888999999999999999875 67888766 443 47786 69998776543
No 86
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.45 E-value=0.22 Score=49.88 Aligned_cols=60 Identities=13% Similarity=0.175 Sum_probs=47.7
Q ss_pred chhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe----CCe--EEecCEEEEecChhh
Q 016211 160 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (393)
Q Consensus 160 ~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VI~a~p~~~ 220 (393)
.+..|...|.+.+++.|++|.+++.|+++..+++ |+|.||.. +|+ .+.|++||+|+....
T Consensus 141 ~G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 206 (588)
T PRK08958 141 TGHALLHTLYQQNLKNHTTIFSEWYALDLVKNQD-GAVVGCTAICIETGEVVYFKARATVLATGGAG 206 (588)
T ss_pred CHHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCC-CEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence 3444778888888788999999999999998644 68888865 353 578999999988765
No 87
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=94.43 E-value=0.12 Score=51.60 Aligned_cols=57 Identities=26% Similarity=0.311 Sum_probs=46.2
Q ss_pred HhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe--CCe--EEec-CEEEEecChhhH
Q 016211 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSA-GAVVLAVGISTL 221 (393)
Q Consensus 163 ~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~--~~~a-d~VI~a~p~~~~ 221 (393)
.+.+.|.+.+++.|++|+++++|++|..++ ++|.+|.+ +|+ ++.| +.||+|+.....
T Consensus 222 ~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~--g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~ 283 (578)
T PRK12843 222 ALIGRLLYSLRARGVRILTQTDVESLETDH--GRVIGATVVQGGVRRRIRARGGVVLATGGFNR 283 (578)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEeeC--CEEEEEEEecCCeEEEEEccceEEECCCCccc
Confidence 377889999999999999999999998765 67888876 343 4676 689999888654
No 88
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=94.37 E-value=0.18 Score=45.43 Aligned_cols=61 Identities=23% Similarity=0.316 Sum_probs=46.7
Q ss_pred HHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhhHHHHhhc
Q 016211 166 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELIKN 227 (393)
Q Consensus 166 ~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~~~~Ll~~ 227 (393)
+++...++++|+.++-+..|..+...++.+....|.+ +|..+.|+.+|+|+.++..+ ||+.
T Consensus 157 k~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~k-lL~~ 218 (399)
T KOG2820|consen 157 KALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINK-LLPT 218 (399)
T ss_pred HHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHh-hcCc
Confidence 5567778889999999999999995432233334555 78889999999999999865 5554
No 89
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=94.29 E-value=0.16 Score=49.55 Aligned_cols=56 Identities=21% Similarity=0.291 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHcC-CeEecCceeeeEEecCCCCeEEEEEe----CCe--EEecCEEEEecChhhH
Q 016211 164 IFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGISTL 221 (393)
Q Consensus 164 l~~~l~~~l~~~G-~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VI~a~p~~~~ 221 (393)
+.++|.+.+++.| ++|+++++|++|..+++ +++. |.+ +|+ +++|+.||+|+..+..
T Consensus 185 l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~d-g~~~-v~~~~~~~G~~~~i~A~~VVvaAGg~s~ 247 (494)
T PRK05257 185 LTRQLVGYLQKQGNFELQLGHEVRDIKRNDD-GSWT-VTVKDLKTGEKRTVRAKFVFIGAGGGAL 247 (494)
T ss_pred HHHHHHHHHHhCCCeEEEeCCEEEEEEECCC-CCEE-EEEEEcCCCceEEEEcCEEEECCCcchH
Confidence 6788888888877 69999999999998654 3343 332 243 6899999999998763
No 90
>PRK06847 hypothetical protein; Provisional
Probab=94.21 E-value=0.16 Score=47.68 Aligned_cols=54 Identities=24% Similarity=0.206 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~ 220 (393)
+.+.|.+.+++.|++|+++++|++|..++ +.+. |.+ +|+++.||.||.|.....
T Consensus 109 l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~~~-v~~~~g~~~~ad~vI~AdG~~s 163 (375)
T PRK06847 109 LARILADAARAAGADVRLGTTVTAIEQDD--DGVT-VTFSDGTTGRYDLVVGADGLYS 163 (375)
T ss_pred HHHHHHHHHHHhCCEEEeCCEEEEEEEcC--CEEE-EEEcCCCEEEcCEEEECcCCCc
Confidence 56677777777899999999999998876 3454 454 688899999999999865
No 91
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=94.20 E-value=0.2 Score=46.83 Aligned_cols=52 Identities=27% Similarity=0.345 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHc-CCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecCh
Q 016211 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGI 218 (393)
Q Consensus 164 l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~ 218 (393)
+.+.+.+.+++. +.+|. ...|++|..++ ++|.+|.+ +|+++.||.||+|+.+
T Consensus 97 y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~--~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 97 YSRAMREKLESHPNLTII-QGEVTDLIVEN--GKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp HHHHHHHHHHTSTTEEEE-ES-EEEEEECT--TEEEEEEETTSEEEEECEEEE-TTT
T ss_pred HHHHHHHHHhcCCCeEEE-EcccceEEecC--CeEEEEEeCCCCEEecCEEEEeccc
Confidence 555666777774 45764 78999999988 68999999 6899999999999998
No 92
>PRK08401 L-aspartate oxidase; Provisional
Probab=94.15 E-value=0.26 Score=47.86 Aligned_cols=56 Identities=20% Similarity=0.223 Sum_probs=46.5
Q ss_pred hHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChhh
Q 016211 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (393)
Q Consensus 162 ~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~~ 220 (393)
..+.+.|.+.+++.|+++..+ .|+.+..++ +++.+|.++|+.+.|+.||+|+....
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~--g~v~Gv~~~g~~i~a~~VVLATGG~~ 175 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAIKN--GKAYGVFLDGELLKFDATVIATGGFS 175 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEeeC--CEEEEEEECCEEEEeCeEEECCCcCc
Confidence 337788999898889999875 788988765 67888888888899999999998865
No 93
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=94.11 E-value=0.28 Score=49.03 Aligned_cols=58 Identities=26% Similarity=0.313 Sum_probs=46.4
Q ss_pred hhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe----CCe--EEecCEEEEecChhh
Q 016211 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (393)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VI~a~p~~~ 220 (393)
+..+...|.+.+++.|++|+.++.|++|..++ |++.+|.. +|+ .+.|+.||+|+....
T Consensus 128 G~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~--g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~ 191 (566)
T TIGR01812 128 GHALLHTLYEQCLKLGVSFFNEYFALDLIHDD--GRVRGVVAYDLKTGEIVFFRAKAVVLATGGYG 191 (566)
T ss_pred HHHHHHHHHHHHHHcCCEEEeccEEEEEEEeC--CEEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence 33367788888888899999999999999875 67887754 353 589999999999754
No 94
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=94.03 E-value=0.21 Score=49.99 Aligned_cols=55 Identities=20% Similarity=0.210 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe--C-Ce-EEecC-EEEEecChhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--G-KE-TYSAG-AVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~-g~-~~~ad-~VI~a~p~~~ 220 (393)
+.+.|.+.+++.|++|+++++|++|..++ ++|++|++ + ++ ++.++ .||+|+....
T Consensus 216 l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~--g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 275 (574)
T PRK12842 216 LAARLAKSALDLGIPILTGTPARELLTEG--GRVVGARVIDAGGERRITARRGVVLACGGFS 275 (574)
T ss_pred HHHHHHHHHHhCCCEEEeCCEEEEEEeeC--CEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence 77888888889999999999999999876 67888876 2 33 46785 7999988765
No 95
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.03 E-value=0.3 Score=48.81 Aligned_cols=57 Identities=23% Similarity=0.286 Sum_probs=46.2
Q ss_pred hHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe----CCe--EEecCEEEEecChhh
Q 016211 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (393)
Q Consensus 162 ~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VI~a~p~~~ 220 (393)
..+.+.|.+.+++.|++|..++.|++|..++ |++.|+.. +|+ ++.|++||+|+....
T Consensus 135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~--g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~ 197 (575)
T PRK05945 135 HAILHELVNNLRRYGVTIYDEWYVMRLILED--NQAKGVVMYHIADGRLEVVRAKAVMFATGGYG 197 (575)
T ss_pred HHHHHHHHHHHhhCCCEEEeCcEEEEEEEEC--CEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence 3477889888888899999999999998875 67777753 343 589999999998864
No 96
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.01 E-value=0.2 Score=50.61 Aligned_cols=53 Identities=19% Similarity=0.194 Sum_probs=42.7
Q ss_pred HHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe----CCe--EEecCEEEEecChhh
Q 016211 166 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (393)
Q Consensus 166 ~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VI~a~p~~~ 220 (393)
+.|.+.+++.|++|++++.|++|..++ ++|.||.+ +|+ .+.|++||+|+.-..
T Consensus 174 ~~L~~~~~~~gV~i~~~t~v~~Li~d~--g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g 232 (640)
T PRK07573 174 QALSRQIAAGTVKMYTRTEMLDLVVVD--GRARGIVARNLVTGEIERHTADAVVLATGGYG 232 (640)
T ss_pred HHHHHHHHhcCCEEEeceEEEEEEEeC--CEEEEEEEEECCCCcEEEEECCEEEECCCCcc
Confidence 556667777899999999999999875 67888875 243 588999999998754
No 97
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=94.00 E-value=0.19 Score=40.70 Aligned_cols=42 Identities=29% Similarity=0.283 Sum_probs=30.8
Q ss_pred cCCeEe-cCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecCh
Q 016211 175 RGCEFL-DGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGI 218 (393)
Q Consensus 175 ~G~~i~-l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~ 218 (393)
.|.+|. .+.+|+.|...++ +...+..+|+.+.||+||+|+..
T Consensus 113 ~~i~v~~~~~~V~~i~~~~~--~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 113 AGITVRHVRAEVVDIRRDDD--GYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CCcEEEEEeeEEEEEEEcCC--cEEEEECCCCEEEeCEEEECCCC
Confidence 354443 6789999999874 34423447888999999999864
No 98
>PRK12839 hypothetical protein; Provisional
Probab=93.88 E-value=0.24 Score=49.42 Aligned_cols=58 Identities=19% Similarity=0.163 Sum_probs=44.9
Q ss_pred HhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe---CCe-EE-ecCEEEEecChhhH
Q 016211 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GKE-TY-SAGAVVLAVGISTL 221 (393)
Q Consensus 163 ~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g~-~~-~ad~VI~a~p~~~~ 221 (393)
.++..|.+.+++.|++|+++++|++|..+++ |+|.+|.. +|+ ++ .++.||+|+.....
T Consensus 215 ~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~-g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~ 277 (572)
T PRK12839 215 ALTGRLLRSADDLGVDLRVSTSATSLTTDKN-GRVTGVRVQGPDGAVTVEATRGVVLATGGFPN 277 (572)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEECCC-CcEEEEEEEeCCCcEEEEeCCEEEEcCCCccc
Confidence 3778888888889999999999999987644 67888875 343 23 45899999877553
No 99
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.78 E-value=0.36 Score=48.11 Aligned_cols=56 Identities=18% Similarity=0.240 Sum_probs=45.9
Q ss_pred HhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe----CCe--EEecCEEEEecChhh
Q 016211 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (393)
Q Consensus 163 ~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VI~a~p~~~ 220 (393)
.+.+.|.+.+.+.|++|..++.|+++..++ |+|.||.+ +|+ .+.|++||+|+.-..
T Consensus 137 ~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 137 ALLHTLFERTSGLNVDFYNEWFSLDLVTDN--KKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred HHHHHHHHHHHhCCCEEEeCcEEEEEEEEC--CEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 367888888877899999999999999875 78998875 232 578999999998755
No 100
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=93.70 E-value=0.34 Score=48.69 Aligned_cols=55 Identities=25% Similarity=0.257 Sum_probs=41.5
Q ss_pred hHHHHHHHHHH----cCCeEecCceeeeEEecCCCCeEEEEEe----CC--eEEecCEEEEecChh
Q 016211 164 IFEPWMDSMRT----RGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIS 219 (393)
Q Consensus 164 l~~~l~~~l~~----~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g--~~~~ad~VI~a~p~~ 219 (393)
+...|.+.+++ .|++|+++++|++|..+++ |+|.||.+ +| ..+.|+.||+|+.-.
T Consensus 131 i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~-grV~GV~~~~~~~g~~~~i~AkaVVLATGG~ 195 (603)
T TIGR01811 131 LLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDG-NRARGIIARNLVTGEIETHSADAVILATGGY 195 (603)
T ss_pred HHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCC-CEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence 55666655544 3789999999999998654 57888875 24 357899999999764
No 101
>PRK06116 glutathione reductase; Validated
Probab=93.65 E-value=0.26 Score=47.67 Aligned_cols=54 Identities=15% Similarity=0.260 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~ 219 (393)
+.+.+.+.+++.|++|++++.|.+|..+++ +.+. |.+ +|+++.||.||+|+...
T Consensus 210 ~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~-g~~~-v~~~~g~~i~~D~Vv~a~G~~ 264 (450)
T PRK06116 210 IRETLVEEMEKKGIRLHTNAVPKAVEKNAD-GSLT-LTLEDGETLTVDCLIWAIGRE 264 (450)
T ss_pred HHHHHHHHHHHCCcEEECCCEEEEEEEcCC-ceEE-EEEcCCcEEEeCEEEEeeCCC
Confidence 566778888899999999999999987653 3343 454 67889999999998653
No 102
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.64 E-value=0.4 Score=48.09 Aligned_cols=60 Identities=13% Similarity=0.148 Sum_probs=47.0
Q ss_pred chhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe----CCe--EEecCEEEEecChhh
Q 016211 160 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (393)
Q Consensus 160 ~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VI~a~p~~~ 220 (393)
.+..+.+.|.+.+.+.|++|+.++.|+++..+++ |++.||.+ +|+ .+.|+.||+|+.-..
T Consensus 146 tG~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 211 (591)
T PRK07057 146 TGHALLHTLYQQNVAAKTQFFVEWMALDLIRDAD-GDVLGVTALEMETGDVYILEAKTTLFATGGAG 211 (591)
T ss_pred ChHHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCC-CeEEEEEEEEcCCCeEEEEECCeEEECCCCcc
Confidence 3444778888888888999999999999998644 57888765 243 578999999988754
No 103
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=93.61 E-value=0.18 Score=47.29 Aligned_cols=55 Identities=25% Similarity=0.308 Sum_probs=42.3
Q ss_pred chhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCCe-EEecCEEEEecChhh
Q 016211 160 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKE-TYSAGAVVLAVGIST 220 (393)
Q Consensus 160 ~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~-~~~ad~VI~a~p~~~ 220 (393)
+...+.+...+.|+++|++|+++++|++|..+. ++ ..+|+ ++.++.||-|+....
T Consensus 207 ~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~----v~--~~~g~~~I~~~tvvWaaGv~a 262 (405)
T COG1252 207 FPPKLSKYAERALEKLGVEVLLGTPVTEVTPDG----VT--LKDGEEEIPADTVVWAAGVRA 262 (405)
T ss_pred CCHHHHHHHHHHHHHCCCEEEcCCceEEECCCc----EE--EccCCeeEecCEEEEcCCCcC
Confidence 344467777888999999999999999998543 32 22455 599999999987754
No 104
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=93.48 E-value=0.27 Score=48.83 Aligned_cols=55 Identities=22% Similarity=0.288 Sum_probs=41.9
Q ss_pred hHHHHHHHHHH---c-CCeEecCceeeeEEecCCCCeEEEEEe---C---------------C-eEEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRT---R-GCEFLDGRRVTDFIYDEERCCISDVVC---G---------------K-ETYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~---~-G~~i~l~~~V~~I~~~~~~~~v~~v~~---~---------------g-~~~~ad~VI~a~p~~~ 220 (393)
+.++|.+.+++ . |++|++++++++++.++ |+|.||.+ . + .++.|+.||+|+.-..
T Consensus 150 ~~~~l~~~~~~~~~~~gv~i~~~t~~~~Li~~~--g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf~ 227 (549)
T PRK12834 150 VVEPFERRVREAAARGLVRFRFRHRVDELVVTD--GAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGGIG 227 (549)
T ss_pred HHHHHHHHHHHHHHhCCceEEecCEeeEEEEeC--CEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCCcc
Confidence 66777666542 3 58999999999999875 68999874 1 1 2578999999998755
No 105
>PRK07512 L-aspartate oxidase; Provisional
Probab=93.34 E-value=0.26 Score=48.44 Aligned_cols=58 Identities=22% Similarity=0.352 Sum_probs=45.6
Q ss_pred hhHhHHHHHHHHHHc-CCeEecCceeeeEEecCCCCeEEEEEe--CCe--EEecCEEEEecChhh
Q 016211 161 REKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGIST 220 (393)
Q Consensus 161 ~~~l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~--~~~ad~VI~a~p~~~ 220 (393)
+..+.+.|.+.+++. |++|+.+++|++|..++ +++.+|.+ +++ ++.|+.||+|+.-..
T Consensus 135 G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~ 197 (513)
T PRK07512 135 GAAIMRALIAAVRATPSITVLEGAEARRLLVDD--GAVAGVLAATAGGPVVLPARAVVLATGGIG 197 (513)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECcChhheeecC--CEEEEEEEEeCCeEEEEECCEEEEcCCCCc
Confidence 334778888888765 79999999999998765 67888776 343 589999999998854
No 106
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=93.34 E-value=0.29 Score=46.49 Aligned_cols=54 Identities=19% Similarity=0.242 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~ 220 (393)
+.+.|.+.+.+.|++|+.+++|++|+.++ +.+. |.+ +|++++||.||.|...+.
T Consensus 113 l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~-v~~~~g~~~~ad~vI~AdG~~S 167 (403)
T PRK07333 113 LINALRKRAEALGIDLREATSVTDFETRD--EGVT-VTLSDGSVLEARLLVAADGARS 167 (403)
T ss_pred HHHHHHHHHHhCCCEEEcCCEEEEEEEcC--CEEE-EEECCCCEEEeCEEEEcCCCCh
Confidence 66778888888899999999999998876 3454 555 677899999999988764
No 107
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=93.19 E-value=0.44 Score=45.14 Aligned_cols=61 Identities=18% Similarity=0.208 Sum_probs=48.3
Q ss_pred CchhHhHHHHHHHHHHc-CCeEecCceeeeEEecCCCCeEEEEEe------CCeEEecCEEEEecChhhHH
Q 016211 159 TLREKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC------GKETYSAGAVVLAVGISTLQ 222 (393)
Q Consensus 159 G~~~~l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~------~g~~~~ad~VI~a~p~~~~~ 222 (393)
.++. +.+.|.+.+++. |.+|++|+.|+.|.+.+| |++. |.+ +..+++|+.|++......+.
T Consensus 179 nFG~-LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~d-g~W~-v~~~~~~~~~~~~v~a~FVfvGAGG~aL~ 246 (488)
T PF06039_consen 179 NFGA-LTRQLVEYLQKQKGFELHLNHEVTDIKRNGD-GRWE-VKVKDLKTGEKREVRAKFVFVGAGGGALP 246 (488)
T ss_pred cHHH-HHHHHHHHHHhCCCcEEEecCEeCeeEECCC-CCEE-EEEEecCCCCeEEEECCEEEECCchHhHH
Confidence 3455 788888888887 889999999999999987 4443 443 23679999999988887765
No 108
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=93.19 E-value=0.25 Score=44.77 Aligned_cols=57 Identities=26% Similarity=0.300 Sum_probs=42.2
Q ss_pred HHHc-CCeEecCceeeeEEecCCCCeEEEEEe---CCe----EEecCEEEEecChhhHHHHhhcc
Q 016211 172 MRTR-GCEFLDGRRVTDFIYDEERCCISDVVC---GKE----TYSAGAVVLAVGISTLQELIKNS 228 (393)
Q Consensus 172 l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g~----~~~ad~VI~a~p~~~~~~Ll~~~ 228 (393)
+.+. +.+|++++.|++|..+++++++++|+. ++. ++.++.||+|..+-...+||-..
T Consensus 202 a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~S 266 (296)
T PF00732_consen 202 ALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRS 266 (296)
T ss_dssp HTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHT
T ss_pred hhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhccc
Confidence 3344 789999999999987633368888877 233 46789999999988777776554
No 109
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=93.18 E-value=0.4 Score=46.91 Aligned_cols=56 Identities=21% Similarity=0.292 Sum_probs=45.5
Q ss_pred HhHHHHHHHHHH-cCCeEecCceeeeEEecCCCCeEEEEEeC--C--eEEecCEEEEecChhh
Q 016211 163 KIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG--K--ETYSAGAVVLAVGIST 220 (393)
Q Consensus 163 ~l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~~--g--~~~~ad~VI~a~p~~~ 220 (393)
.+.+.|.+.+++ .|++|+.++.|++|..++ +++.+|.+. + ..+.|+.||+|+....
T Consensus 129 ~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~--g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~ 189 (488)
T TIGR00551 129 EVITTLVKKALNHPNIRIIEGENALDLLIET--GRVVGVWVWNRETVETCHADAVVLATGGAG 189 (488)
T ss_pred HHHHHHHHHHHhcCCcEEEECeEeeeeeccC--CEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence 377888888887 589999999999999865 567777662 3 4689999999999865
No 110
>PRK07395 L-aspartate oxidase; Provisional
Probab=93.14 E-value=0.37 Score=47.83 Aligned_cols=58 Identities=19% Similarity=0.212 Sum_probs=44.9
Q ss_pred hHhHHHHHHHHHHc-CCeEecCceeeeEEecCCCCeEEEEEe--CCe--EEecCEEEEecChh
Q 016211 162 EKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGIS 219 (393)
Q Consensus 162 ~~l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~--~~~ad~VI~a~p~~ 219 (393)
..+.+.|.+.+++. |++|++++.|+++..+++.|+|.||.+ +|+ .+.|+.||+|+.-.
T Consensus 134 ~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~ 196 (553)
T PRK07395 134 RAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGG 196 (553)
T ss_pred HHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCC
Confidence 33778888888654 899999999999998642157888765 454 37899999999874
No 111
>PRK07190 hypothetical protein; Provisional
Probab=93.11 E-value=0.42 Score=46.68 Aligned_cols=61 Identities=11% Similarity=0.140 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChhh-HHHHhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST-LQELIK 226 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~~-~~~Ll~ 226 (393)
+-+.|.+.+++.|++|+.+++|++|..+++ .+..+..+|++++|+.||.|..... +.+.+.
T Consensus 111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~--~v~v~~~~g~~v~a~~vVgADG~~S~vR~~lg 172 (487)
T PRK07190 111 VEKLLDDKLKEAGAAVKRNTSVVNIELNQA--GCLTTLSNGERIQSRYVIGADGSRSFVRNHFN 172 (487)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCC--eeEEEECCCcEEEeCEEEECCCCCHHHHHHcC
Confidence 555666778888999999999999998874 3542233677899999999999876 445443
No 112
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=93.00 E-value=0.35 Score=45.79 Aligned_cols=59 Identities=17% Similarity=0.224 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhh-HHHHh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELI 225 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~-~~~Ll 225 (393)
+.+.|.+.+++.|++|+.+++|++|+.++ +.+. |++ +|++++||.||.|...+. +.+.+
T Consensus 115 l~~~L~~~~~~~gv~i~~~~~v~~i~~~~--~~v~-v~~~~g~~~~a~~vV~AdG~~S~vr~~~ 175 (392)
T PRK08773 115 LVDRLWAALHAAGVQLHCPARVVALEQDA--DRVR-LRLDDGRRLEAALAIAADGAASTLRELA 175 (392)
T ss_pred HHHHHHHHHHhCCCEEEcCCeEEEEEecC--CeEE-EEECCCCEEEeCEEEEecCCCchHHHhh
Confidence 66778888888899999999999999876 3454 555 577899999999998865 34443
No 113
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=92.94 E-value=0.57 Score=47.24 Aligned_cols=57 Identities=19% Similarity=0.257 Sum_probs=45.4
Q ss_pred hHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe----CCe--EEecCEEEEecChh
Q 016211 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIS 219 (393)
Q Consensus 162 ~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VI~a~p~~ 219 (393)
..+...|.+.+++.|++|..+++|+++..+++ |+|.||.. +|+ .+.|++||+|+.-.
T Consensus 166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 228 (617)
T PTZ00139 166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDED-GECRGVIAMSMEDGSIHRFRAHYTVIATGGY 228 (617)
T ss_pred HHHHHHHHHHHHhCCCEEEeceEEEEEEECCC-CEEEEEEEEECCCCeEEEEECCcEEEeCCCC
Confidence 33778888888888999999999999998433 67888864 353 57899999999664
No 114
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=92.93 E-value=0.35 Score=46.65 Aligned_cols=61 Identities=25% Similarity=0.378 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChhhHHHHhhc
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKN 227 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~~~~~Ll~~ 227 (393)
+.+.+.+.+++.|++|+++++|.+|..+ +++..+.++++++.||.||+|++...-..++..
T Consensus 193 ~~~~l~~~l~~~gI~v~~~~~v~~i~~~---~~~~~v~~~~~~i~~d~vi~a~G~~p~~~~l~~ 253 (444)
T PRK09564 193 ITDVMEEELRENGVELHLNEFVKSLIGE---DKVEGVVTDKGEYEADVVIVATGVKPNTEFLED 253 (444)
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEEEecC---CcEEEEEeCCCEEEcCEEEECcCCCcCHHHHHh
Confidence 5667777888899999999999999643 235556677778999999999887543334443
No 115
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=92.93 E-value=0.27 Score=46.01 Aligned_cols=55 Identities=18% Similarity=0.144 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHc-CCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChhhHHHHhh
Q 016211 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIK 226 (393)
Q Consensus 164 l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~~~~~Ll~ 226 (393)
+...|.+.+.+. |++|+.+++|++|.. + .|.+++++++||+||+|+.++.. .|++
T Consensus 147 ~~~~l~~~~~~~~Gv~i~~~t~V~~i~~----~---~v~t~~g~i~a~~VV~A~G~~s~-~l~~ 202 (365)
T TIGR03364 147 AIPALAAYLAEQHGVEFHWNTAVTSVET----G---TVRTSRGDVHADQVFVCPGADFE-TLFP 202 (365)
T ss_pred HHHHHHHHHHhcCCCEEEeCCeEEEEec----C---eEEeCCCcEEeCEEEECCCCChh-hhCc
Confidence 557777777765 999999999999962 2 25565445789999999999763 3443
No 116
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=92.92 E-value=0.35 Score=43.47 Aligned_cols=54 Identities=24% Similarity=0.259 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe--CCeEEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKETYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~~~~ad~VI~a~p~~~ 220 (393)
+.+.|.+.+++.|++++++++|+++..++ +++. +.. ++++++||.||.|.....
T Consensus 93 l~~~l~~~~~~~gv~~~~~~~v~~~~~~~--~~~~-~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 93 FDEQLAERAQEAGAELRLGTTVLDVEIHD--DRVV-VIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred HHHHHHHHHHHcCCEEEeCcEEeeEEEeC--CEEE-EEEcCccEEEEeCEEEECCCcch
Confidence 55667777888899999999999998877 3443 333 456899999999999864
No 117
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=92.89 E-value=0.42 Score=33.61 Aligned_cols=40 Identities=18% Similarity=0.261 Sum_probs=32.0
Q ss_pred chhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe
Q 016211 160 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC 202 (393)
Q Consensus 160 ~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~ 202 (393)
+..-+.+.+.+.+++.|++|++++.|.+|..+++ + +. |++
T Consensus 38 ~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~-~-~~-V~~ 77 (80)
T PF00070_consen 38 FDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGD-G-VE-VTL 77 (80)
T ss_dssp SSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETT-S-EE-EEE
T ss_pred cCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCC-E-EE-EEE
Confidence 3344667778889999999999999999999886 4 66 665
No 118
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=92.76 E-value=0.45 Score=45.83 Aligned_cols=53 Identities=26% Similarity=0.259 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~ 219 (393)
+.+.+.+.+++.|+++++++.|++|..++ +++. +..+|+++.+|.||+|+...
T Consensus 200 ~~~~~~~~l~~~GI~i~~~~~V~~i~~~~--~~v~-v~~~g~~i~~D~viva~G~~ 252 (438)
T PRK07251 200 VAALAKQYMEEDGITFLLNAHTTEVKNDG--DQVL-VVTEDETYRFDALLYATGRK 252 (438)
T ss_pred HHHHHHHHHHHcCCEEEcCCEEEEEEecC--CEEE-EEECCeEEEcCEEEEeeCCC
Confidence 55556677888999999999999998754 3443 45578889999999997654
No 119
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.65 E-value=0.41 Score=47.52 Aligned_cols=58 Identities=19% Similarity=0.221 Sum_probs=45.4
Q ss_pred hHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe----CCe--EEecCEEEEecChhh
Q 016211 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (393)
Q Consensus 162 ~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VI~a~p~~~ 220 (393)
..+.+.|.+.+++.|++|++++.|+++..+++ +++.+|.. +|+ .+.|+.||+|+....
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~-~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDEN-REVIGAIFLDLRNGEIFPIYAKATILATGGAG 197 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCC-cEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence 33677888888888999999999999998763 45877653 343 589999999998754
No 120
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=92.63 E-value=0.66 Score=47.11 Aligned_cols=55 Identities=20% Similarity=0.159 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe----CCe--EEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VI~a~p~~~ 220 (393)
+...|.+.+.+.|++|+.+++|++|..++ |++.||.+ +|+ .+.|+.||+|+....
T Consensus 160 l~~~L~~~~~~~gv~i~~~~~~~~Li~~~--g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g 220 (657)
T PRK08626 160 MLYAVDNEAIKLGVPVHDRKEAIALIHDG--KRCYGAVVRCLITGELRAYVAKATLIATGGYG 220 (657)
T ss_pred HHHHHHHHHHhCCCEEEeeEEEEEEEEEC--CEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence 66678888888899999999999999876 67877765 353 467999999998754
No 121
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=92.56 E-value=0.47 Score=44.69 Aligned_cols=54 Identities=13% Similarity=0.192 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~ 220 (393)
+.+.+.+.+++.|++|+++++|.+|..++ +.+. |.+ +|+++.||.||+|+....
T Consensus 185 ~~~~l~~~l~~~gV~i~~~~~v~~i~~~~--~~~~-v~~~~g~~i~~D~vI~a~G~~p 239 (377)
T PRK04965 185 VSSRLQHRLTEMGVHLLLKSQLQGLEKTD--SGIR-ATLDSGRSIEVDAVIAAAGLRP 239 (377)
T ss_pred HHHHHHHHHHhCCCEEEECCeEEEEEccC--CEEE-EEEcCCcEEECCEEEECcCCCc
Confidence 45567777888999999999999998765 3343 555 688899999999987654
No 122
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=92.54 E-value=0.5 Score=46.53 Aligned_cols=55 Identities=15% Similarity=0.246 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHc-CCeEecCceeeeEEecCCCCeEEEEEe--CCe--EEecC-EEEEecChhh
Q 016211 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAG-AVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~--~~~ad-~VI~a~p~~~ 220 (393)
+.+.+.+.+.+. |++|+++++|++|+.++ ++|.+|.. +|+ ++.|+ .||+|+.-..
T Consensus 175 l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~--g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~ 235 (513)
T PRK12837 175 LIGRFLAALARFPNARLRLNTPLVELVVED--GRVVGAVVERGGERRRVRARRGVLLAAGGFE 235 (513)
T ss_pred HHHHHHHHHHhCCCCEEEeCCEEEEEEecC--CEEEEEEEEECCcEEEEEeCceEEEeCCCcc
Confidence 567777776664 89999999999999875 67888876 343 57886 7999988753
No 123
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=92.51 E-value=0.59 Score=47.21 Aligned_cols=59 Identities=15% Similarity=0.225 Sum_probs=46.7
Q ss_pred hhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe----CCe--EEecCEEEEecChhh
Q 016211 161 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (393)
Q Consensus 161 ~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VI~a~p~~~ 220 (393)
+..+.+.|.+.+.+.|++|..++.|+++..+++ |++.||.. +|+ .+.|++||+|+.-..
T Consensus 186 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 250 (635)
T PLN00128 186 GHAMLHTLYGQAMKHNTQFFVEYFALDLIMDSD-GACQGVIALNMEDGTLHRFRAHSTILATGGYG 250 (635)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCC-CEEEEEEEEEcCCCeEEEEEcCeEEECCCCCc
Confidence 334778888888888999999999999988643 67888865 353 578999999998864
No 124
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=92.51 E-value=0.43 Score=46.52 Aligned_cols=55 Identities=13% Similarity=0.080 Sum_probs=41.7
Q ss_pred hHHHHHHHHHH-cCCeEecCceeeeEEecCCCCeEEEEE---eC-Ce--EEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVV---CG-KE--TYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~---~~-g~--~~~ad~VI~a~p~~~ 220 (393)
+.+++.+.+.+ .|++|+++++|+.|..+++ +.+. |. ++ |+ +++||.||+|...+.
T Consensus 186 L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d-~~w~-v~v~~t~~g~~~~i~Ad~VV~AAGawS 247 (497)
T PRK13339 186 LTRKLAKHLESHPNAQVKYNHEVVDLERLSD-GGWE-VTVKDRNTGEKREQVADYVFIGAGGGA 247 (497)
T ss_pred HHHHHHHHHHhCCCcEEEeCCEEEEEEECCC-CCEE-EEEEecCCCceEEEEcCEEEECCCcch
Confidence 66788888754 4899999999999988733 3343 33 33 42 689999999999987
No 125
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=92.51 E-value=0.48 Score=46.59 Aligned_cols=55 Identities=24% Similarity=0.143 Sum_probs=42.4
Q ss_pred HhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe----CC--eEEecCEEEEecChhh
Q 016211 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIST 220 (393)
Q Consensus 163 ~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g--~~~~ad~VI~a~p~~~ 220 (393)
+++..+++.+++.|++|+.+++|++|..++ +.+ +|.+ +| .++.|+.||.|+.++.
T Consensus 156 rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~--~~~-~v~~~~~~~g~~~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 156 RLVVLNARDAAERGAEILTRTRVVSARREN--GLW-HVTLEDTATGKRYTVRARALVNAAGPWV 216 (508)
T ss_pred HHHHHHHHHHHHcCCEEEcCcEEEEEEEeC--CEE-EEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence 355667777788899999999999998765 434 3544 24 3689999999999976
No 126
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=92.47 E-value=0.52 Score=45.76 Aligned_cols=54 Identities=22% Similarity=0.266 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CC---eEEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK---ETYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g---~~~~ad~VI~a~p~~~ 220 (393)
+.+.+.+.+++.|++|++++.|++|..++ +.+. +.+ +| +++.||.||+|+....
T Consensus 215 ~~~~l~~~l~~~gV~i~~~~~V~~i~~~~--~~v~-v~~~~gg~~~~i~~D~vi~a~G~~p 272 (462)
T PRK06416 215 ISKLAERALKKRGIKIKTGAKAKKVEQTD--DGVT-VTLEDGGKEETLEADYVLVAVGRRP 272 (462)
T ss_pred HHHHHHHHHHHcCCEEEeCCEEEEEEEeC--CEEE-EEEEeCCeeEEEEeCEEEEeeCCcc
Confidence 56677788888999999999999998765 3353 443 44 6799999999987653
No 127
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=92.40 E-value=0.43 Score=44.95 Aligned_cols=59 Identities=14% Similarity=0.266 Sum_probs=45.6
Q ss_pred hHHHHHHHHHH-cCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhh-HHHHh
Q 016211 164 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELI 225 (393)
Q Consensus 164 l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~-~~~Ll 225 (393)
+.+.|.+.+++ .|++++.+++|++|..+++ .+. |.+ +|+++.||.||.|.+.+. +.+.+
T Consensus 107 l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~--~~~-v~~~~g~~~~ad~vV~AdG~~S~vr~~l 168 (382)
T TIGR01984 107 LGQALLSRLALLTNIQLYCPARYKEIIRNQD--YVR-VTLDNGQQLRAKLLIAADGANSKVRELL 168 (382)
T ss_pred HHHHHHHHHHhCCCcEEEcCCeEEEEEEcCC--eEE-EEECCCCEEEeeEEEEecCCChHHHHHc
Confidence 66777887777 4899999999999988763 454 555 577899999999999875 34444
No 128
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=92.37 E-value=0.55 Score=44.59 Aligned_cols=56 Identities=23% Similarity=0.348 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~~ 220 (393)
+.+-|++..++.|++++.++.|+.+..+++ +.+.++..++.+++|+.||.|..++.
T Consensus 97 fd~~La~~A~~aGae~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~a~~vI~AdG~~s 152 (396)
T COG0644 97 FDKWLAERAEEAGAELYPGTRVTGVIREDD-GVVVGVRAGDDEVRAKVVIDADGVNS 152 (396)
T ss_pred hhHHHHHHHHHcCCEEEeceEEEEEEEeCC-cEEEEEEcCCEEEEcCEEEECCCcch
Confidence 434577778889999999999999999885 33433333557899999999998765
No 129
>PRK08275 putative oxidoreductase; Provisional
Probab=92.31 E-value=0.54 Score=46.79 Aligned_cols=56 Identities=16% Similarity=0.183 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe----CCe--EEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VI~a~p~~~ 220 (393)
+.+.|.+.+++.|++|..++.|++|..+++ +++.||.. +|+ .+.|+.||+|+....
T Consensus 139 i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 139 IKKVLYRQLKRARVLITNRIMATRLLTDAD-GRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHHHHHCCCEEEcceEEEEEEEcCC-CeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 678888888888999999999999998733 57877764 353 478999999998854
No 130
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.30 E-value=0.68 Score=46.41 Aligned_cols=59 Identities=29% Similarity=0.364 Sum_probs=46.2
Q ss_pred hHhHHHHHHHHHHcCCeEecCceeeeEEecCC--CCeEEEEEe----CCe--EEecCEEEEecChhh
Q 016211 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEE--RCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (393)
Q Consensus 162 ~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~--~~~v~~v~~----~g~--~~~ad~VI~a~p~~~ 220 (393)
..+.+.|.+.+++.|++|..++.|++|..+++ +|++.||.. +|+ .+.|+.||+|+....
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 34778888888888999999999999987642 146878764 354 578999999998865
No 131
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=92.30 E-value=0.49 Score=45.63 Aligned_cols=54 Identities=17% Similarity=0.237 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~~ 220 (393)
+.+.+.+.+++.|+++++++.|++|..++ +++. +..+++++.+|.||+|+....
T Consensus 201 ~~~~l~~~l~~~gV~v~~~~~v~~i~~~~--~~v~-v~~~~g~i~~D~vl~a~G~~p 254 (441)
T PRK08010 201 IADNIATILRDQGVDIILNAHVERISHHE--NQVQ-VHSEHAQLAVDALLIASGRQP 254 (441)
T ss_pred HHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CEEE-EEEcCCeEEeCEEEEeecCCc
Confidence 56777888899999999999999998765 4443 555545689999999976543
No 132
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=92.22 E-value=0.31 Score=49.63 Aligned_cols=64 Identities=16% Similarity=0.121 Sum_probs=47.9
Q ss_pred eEEecCCch--hHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeC-CeEEecCEEEEecChhh
Q 016211 153 LVWCRGTLR--EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 220 (393)
Q Consensus 153 ~~~~~gG~~--~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~-g~~~~ad~VI~a~p~~~ 220 (393)
+.++.+|+- ..+.+.+.+.+++ |++|+.+++|++|..++ +++. |.++ |..+.||.||+|+..+.
T Consensus 397 ~~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~--~~~~-v~t~~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 397 IFYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLERED--DGWQ-LDFAGGTLASAPVVVLANGHDA 463 (662)
T ss_pred EEeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeC--CEEE-EEECCCcEEECCEEEECCCCCc
Confidence 344555531 2367788888888 99999999999999876 4465 6665 55578999999999876
No 133
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=92.18 E-value=0.51 Score=45.80 Aligned_cols=54 Identities=15% Similarity=0.130 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~ 220 (393)
+.+.+.+.+++.|++|++++.|++|..++ +.+. +.+ +|++++||.||+|+....
T Consensus 218 ~~~~l~~~l~~~gI~v~~~~~v~~i~~~~--~~~~-v~~~~g~~i~~D~vi~a~G~~p 272 (461)
T PRK05249 218 ISDALSYHLRDSGVTIRHNEEVEKVEGGD--DGVI-VHLKSGKKIKADCLLYANGRTG 272 (461)
T ss_pred HHHHHHHHHHHcCCEEEECCEEEEEEEeC--CeEE-EEECCCCEEEeCEEEEeecCCc
Confidence 66778888888999999999999998765 3343 444 577899999999987654
No 134
>PRK14694 putative mercuric reductase; Provisional
Probab=92.16 E-value=0.53 Score=45.81 Aligned_cols=54 Identities=19% Similarity=0.243 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~~ 220 (393)
+.+.+.+.+++.|++|++++.|.+|..++ +.+. +.++++++.+|.||+|+....
T Consensus 220 ~~~~l~~~l~~~GI~v~~~~~v~~i~~~~--~~~~-v~~~~~~i~~D~vi~a~G~~p 273 (468)
T PRK14694 220 VGEAIEAAFRREGIEVLKQTQASEVDYNG--REFI-LETNAGTLRAEQLLVATGRTP 273 (468)
T ss_pred HHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CEEE-EEECCCEEEeCEEEEccCCCC
Confidence 66778888889999999999999998765 3343 555666799999999987644
No 135
>PLN02507 glutathione reductase
Probab=91.98 E-value=0.69 Score=45.39 Aligned_cols=56 Identities=20% Similarity=0.283 Sum_probs=43.0
Q ss_pred hHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhh
Q 016211 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (393)
Q Consensus 162 ~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~ 220 (393)
.-+.+.+.+.+++.|++|++++.|++|..++ +.+. +.. +|+++.+|.||++++...
T Consensus 244 ~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~--~~~~-v~~~~g~~i~~D~vl~a~G~~p 300 (499)
T PLN02507 244 DEMRAVVARNLEGRGINLHPRTNLTQLTKTE--GGIK-VITDHGEEFVADVVLFATGRAP 300 (499)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC--CeEE-EEECCCcEEEcCEEEEeecCCC
Confidence 3356667778888999999999999998765 3343 445 577899999999987543
No 136
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.96 E-value=0.68 Score=45.50 Aligned_cols=55 Identities=20% Similarity=0.088 Sum_probs=42.6
Q ss_pred HhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CC----eEEecCEEEEecChhh
Q 016211 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK----ETYSAGAVVLAVGIST 220 (393)
Q Consensus 163 ~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g----~~~~ad~VI~a~p~~~ 220 (393)
++...++..+++.|++|+.+++|++|..++ +.+ +|.+ ++ .++.|+.||.|+.++.
T Consensus 156 rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~--~~~-~v~~~~~~g~~~~i~a~~VVnAaG~wa 215 (502)
T PRK13369 156 RLVVLNALDAAERGATILTRTRCVSARREG--GLW-RVETRDADGETRTVRARALVNAAGPWV 215 (502)
T ss_pred HHHHHHHHHHHHCCCEEecCcEEEEEEEcC--CEE-EEEEEeCCCCEEEEEecEEEECCCccH
Confidence 355667777788999999999999999875 433 4554 32 3589999999999976
No 137
>PRK06834 hypothetical protein; Provisional
Probab=91.93 E-value=0.6 Score=45.63 Aligned_cols=59 Identities=22% Similarity=0.213 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhh-HHHHh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELI 225 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~-~~~Ll 225 (393)
+.+.|.+.+++.|++|+.+++|++|+.+++ .+. |++ +|++++||.||.|...+. +.+.+
T Consensus 102 le~~L~~~l~~~gv~i~~~~~v~~v~~~~~--~v~-v~~~~g~~i~a~~vVgADG~~S~vR~~l 162 (488)
T PRK06834 102 IERILAEWVGELGVPIYRGREVTGFAQDDT--GVD-VELSDGRTLRAQYLVGCDGGRSLVRKAA 162 (488)
T ss_pred HHHHHHHHHHhCCCEEEcCCEEEEEEEcCC--eEE-EEECCCCEEEeCEEEEecCCCCCcHhhc
Confidence 556677778888999999999999998874 354 555 567899999999988865 34444
No 138
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=91.92 E-value=0.59 Score=44.04 Aligned_cols=57 Identities=23% Similarity=0.169 Sum_probs=45.2
Q ss_pred HhHHHHHHHHHHcC-CeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChhhHH
Q 016211 163 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ 222 (393)
Q Consensus 163 ~l~~~l~~~l~~~G-~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~~~~ 222 (393)
.++..+.+.+++.| ..+..+++|..+..++ ++++|.+++.++.||+||+|+.++.-.
T Consensus 157 ~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~---~~~~v~t~~g~i~a~~vv~a~G~~~~~ 214 (387)
T COG0665 157 LLTRALAAAAEELGVVIIEGGTPVTSLERDG---RVVGVETDGGTIEADKVVLAAGAWAGE 214 (387)
T ss_pred HHHHHHHHHHHhcCCeEEEccceEEEEEecC---cEEEEEeCCccEEeCEEEEcCchHHHH
Confidence 36788888888989 5777799999999762 255678865559999999999988643
No 139
>PRK14727 putative mercuric reductase; Provisional
Probab=91.84 E-value=0.6 Score=45.55 Aligned_cols=54 Identities=15% Similarity=0.227 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~~ 220 (393)
+.+.+.+.+++.|++|+++++|++|..++ +.+. +..+++++.||.||+|++...
T Consensus 230 ~~~~l~~~L~~~GV~i~~~~~V~~i~~~~--~~~~-v~~~~g~i~aD~VlvA~G~~p 283 (479)
T PRK14727 230 LGETLTACFEKEGIEVLNNTQASLVEHDD--NGFV-LTTGHGELRAEKLLISTGRHA 283 (479)
T ss_pred HHHHHHHHHHhCCCEEEcCcEEEEEEEeC--CEEE-EEEcCCeEEeCEEEEccCCCC
Confidence 55677788888999999999999998765 3343 555555689999999988764
No 140
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=91.81 E-value=0.72 Score=44.74 Aligned_cols=54 Identities=20% Similarity=0.305 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CC--eEEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK--ETYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g--~~~~ad~VI~a~p~~~ 220 (393)
+.+.+.+.+++.|++|++++.|.+|..++ +++. +.+ +| +++.+|.||+|+....
T Consensus 213 ~~~~~~~~l~~~gi~i~~~~~v~~i~~~~--~~v~-v~~~~g~~~~i~~D~vi~a~G~~p 269 (461)
T TIGR01350 213 VSKVVAKALKKKGVKILTNTKVTAVEKND--DQVV-YENKGGETETLTGEKVLVAVGRKP 269 (461)
T ss_pred HHHHHHHHHHHcCCEEEeCCEEEEEEEeC--CEEE-EEEeCCcEEEEEeCEEEEecCCcc
Confidence 56677788888999999999999998765 4454 444 45 4799999999987643
No 141
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=91.77 E-value=0.63 Score=45.23 Aligned_cols=54 Identities=19% Similarity=0.166 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~ 220 (393)
+.+.+.+.+++.|++|++++.|.+|+.++ +.+. |.+ +|+++++|.||+++....
T Consensus 220 ~~~~l~~~L~~~gV~i~~~~~v~~v~~~~--~~~~-v~~~~g~~l~~D~vl~a~G~~p 274 (466)
T PRK07845 220 AAEVLEEVFARRGMTVLKRSRAESVERTG--DGVV-VTLTDGRTVEGSHALMAVGSVP 274 (466)
T ss_pred HHHHHHHHHHHCCcEEEcCCEEEEEEEeC--CEEE-EEECCCcEEEecEEEEeecCCc
Confidence 55667788888999999999999998665 3354 444 678899999999977643
No 142
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=91.75 E-value=0.74 Score=44.47 Aligned_cols=53 Identities=21% Similarity=0.232 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~ 219 (393)
+.+.+.+.+++.|+++++++.|++|..+++ .+. |.+ +|+++.+|.||+|++..
T Consensus 209 ~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~--~~~-v~~~~g~~i~~D~viva~G~~ 262 (446)
T TIGR01424 209 MRALLARNMEGRGIRIHPQTSLTSITKTDD--GLK-VTLSHGEEIVADVVLFATGRS 262 (446)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCC--eEE-EEEcCCcEeecCEEEEeeCCC
Confidence 556677778889999999999999987653 243 444 67789999999998764
No 143
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=91.68 E-value=0.59 Score=44.48 Aligned_cols=60 Identities=13% Similarity=0.186 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhh-HHHHhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELIK 226 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~-~~~Ll~ 226 (393)
+.+.|.+.+++.|++|+.+++|.+|+.+++ .+. |++ +|++++||.||.|...+. +.+++.
T Consensus 114 l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~--~v~-v~~~~g~~~~a~~vVgAdG~~S~vR~~lg 175 (405)
T PRK05714 114 VQDALLERLHDSDIGLLANARLEQMRRSGD--DWL-LTLADGRQLRAPLVVAADGANSAVRRLAG 175 (405)
T ss_pred HHHHHHHHHhcCCCEEEcCCEEEEEEEcCC--eEE-EEECCCCEEEeCEEEEecCCCchhHHhcC
Confidence 556777778778899999999999998763 354 555 677899999999999875 455554
No 144
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=91.65 E-value=0.76 Score=43.63 Aligned_cols=58 Identities=17% Similarity=0.252 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhhHHHHh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELI 225 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~~~~Ll 225 (393)
+.+.+.+.+++.|++|++++.|++|.. + +.+. |.+ +|+++.||.||+++....-..++
T Consensus 188 ~~~~l~~~l~~~GV~i~~~~~V~~i~~-~--~~~~-v~l~~g~~i~aD~Vv~a~G~~pn~~l~ 246 (396)
T PRK09754 188 VQRYLLQRHQQAGVRILLNNAIEHVVD-G--EKVE-LTLQSGETLQADVVIYGIGISANDQLA 246 (396)
T ss_pred HHHHHHHHHHHCCCEEEeCCeeEEEEc-C--CEEE-EEECCCCEEECCEEEECCCCChhhHHH
Confidence 445567778889999999999999976 3 3343 555 67889999999998875433343
No 145
>PRK07804 L-aspartate oxidase; Provisional
Probab=91.57 E-value=0.58 Score=46.38 Aligned_cols=57 Identities=19% Similarity=0.172 Sum_probs=45.5
Q ss_pred HhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-------C-C-eEEecCEEEEecChhh
Q 016211 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-------G-K-ETYSAGAVVLAVGIST 220 (393)
Q Consensus 163 ~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-------~-g-~~~~ad~VI~a~p~~~ 220 (393)
.+.+.|.+.+++.|++|+.++.|++|..+++ |++.+|.+ + + ..+.|+.||+|+....
T Consensus 145 ~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~-g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~ 210 (541)
T PRK07804 145 EVQRALDAAVRADPLDIREHALALDLLTDGT-GAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLG 210 (541)
T ss_pred HHHHHHHHHHHhCCCEEEECeEeeeeEEcCC-CeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCC
Confidence 3778888888888999999999999998754 57777754 1 2 3688999999998754
No 146
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=91.56 E-value=0.48 Score=44.79 Aligned_cols=62 Identities=23% Similarity=0.322 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhhHHHHhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELIK 226 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~~~~Ll~ 226 (393)
+.+.+...+++.|+++.+++.|.++....+ |++.-|.+ +|.++.||.||+-+...-..+++.
T Consensus 257 i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~-Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~ 319 (478)
T KOG1336|consen 257 IGQFYEDYYENKGVKFYLGTVVSSLEGNSD-GEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLE 319 (478)
T ss_pred HHHHHHHHHHhcCeEEEEecceeecccCCC-CcEEEEEeccCCEeccCeEEEeecccccccccc
Confidence 556677778999999999999999998776 57777777 689999999999888766555544
No 147
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=91.42 E-value=0.63 Score=43.80 Aligned_cols=54 Identities=13% Similarity=0.135 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHcC-CeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~G-~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~ 220 (393)
+.+.|.+.+.+.| ++|+.+++|++|..++ +.+. |++ +|+++++|.||.|...+.
T Consensus 108 l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~--~~~~-v~~~~g~~~~~~~vi~adG~~S 163 (385)
T TIGR01988 108 LQQALWERLQEYPNVTLLCPARVVELPRHS--DHVE-LTLDDGQQLRARLLVGADGANS 163 (385)
T ss_pred HHHHHHHHHHhCCCcEEecCCeEEEEEecC--CeeE-EEECCCCEEEeeEEEEeCCCCC
Confidence 5677888787777 8999999999998876 4454 555 677899999999988764
No 148
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=91.39 E-value=0.74 Score=48.13 Aligned_cols=61 Identities=10% Similarity=0.118 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhhHHHHh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELI 225 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~~~~Ll 225 (393)
..+.+.+.+++.|++|++++.|.+|..+++ +.+..|.. +|+++.+|.||+|++...-..|+
T Consensus 189 ~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~-~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~ 250 (847)
T PRK14989 189 GGEQLRRKIESMGVRVHTSKNTLEIVQEGV-EARKTMRFADGSELEVDFIVFSTGIRPQDKLA 250 (847)
T ss_pred HHHHHHHHHHHCCCEEEcCCeEEEEEecCC-CceEEEEECCCCEEEcCEEEECCCcccCchHH
Confidence 445677888999999999999999986532 22334555 68889999999998865433444
No 149
>PRK09897 hypothetical protein; Provisional
Probab=91.32 E-value=0.76 Score=45.26 Aligned_cols=51 Identities=18% Similarity=0.230 Sum_probs=38.4
Q ss_pred HHHHHHHHHHcC--CeEecCceeeeEEecCCCCeEEEEEe-C-CeEEecCEEEEecCh
Q 016211 165 FEPWMDSMRTRG--CEFLDGRRVTDFIYDEERCCISDVVC-G-KETYSAGAVVLAVGI 218 (393)
Q Consensus 165 ~~~l~~~l~~~G--~~i~l~~~V~~I~~~~~~~~v~~v~~-~-g~~~~ad~VI~a~p~ 218 (393)
.+.+.+.+++.| ++|+.+++|+.|..++ +++. |++ + |+++.||.||+|+..
T Consensus 110 f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~--~g~~-V~t~~gg~~i~aD~VVLAtGh 164 (534)
T PRK09897 110 FLRLVDQARQQKFAVAVYESCQVTDLQITN--AGVM-LATNQDLPSETFDLAVIATGH 164 (534)
T ss_pred HHHHHHHHHHcCCeEEEEECCEEEEEEEeC--CEEE-EEECCCCeEEEcCEEEECCCC
Confidence 345566666676 6888999999998876 3454 565 4 467999999999986
No 150
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=91.26 E-value=1 Score=43.59 Aligned_cols=55 Identities=11% Similarity=0.081 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CC-eEEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK-ETYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g-~~~~ad~VI~a~p~~~ 220 (393)
+.+.+.+.+++.|+++++++.|++|..+++ +.+. |.+ +| +++.+|.||+++....
T Consensus 209 ~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~-~~~~-v~~~~g~~~i~~D~vi~a~G~~p 265 (450)
T TIGR01421 209 ISETITEEYEKEGINVHKLSKPVKVEKTVE-GKLV-IHFEDGKSIDDVDELIWAIGRKP 265 (450)
T ss_pred HHHHHHHHHHHcCCEEEcCCEEEEEEEeCC-ceEE-EEECCCcEEEEcCEEEEeeCCCc
Confidence 567778888889999999999999987543 3233 455 56 5799999999987654
No 151
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=91.23 E-value=0.84 Score=44.57 Aligned_cols=57 Identities=12% Similarity=0.252 Sum_probs=44.1
Q ss_pred hHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhh
Q 016211 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (393)
Q Consensus 162 ~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~ 220 (393)
.-+.+.+.+.+++.|++|++++.|++|..+++ +.+ .|.+ +|+++.+|.||+++....
T Consensus 231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~-~~~-~v~~~~g~~i~~D~vl~a~G~~P 288 (486)
T TIGR01423 231 STLRKELTKQLRANGINIMTNENPAKVTLNAD-GSK-HVTFESGKTLDVDVVMMAIGRVP 288 (486)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCC-ceE-EEEEcCCCEEEcCEEEEeeCCCc
Confidence 33667888889999999999999999987643 323 3454 577899999999887543
No 152
>PRK08071 L-aspartate oxidase; Provisional
Probab=91.15 E-value=0.47 Score=46.64 Aligned_cols=54 Identities=22% Similarity=0.273 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe---CCe--EEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GKE--TYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g~--~~~ad~VI~a~p~~~ 220 (393)
+.+.|.+.++ .|++|+.++.|++|..++ +++.+|.+ +|+ .+.|+.||+|+....
T Consensus 132 i~~~L~~~~~-~gV~i~~~~~v~~Li~~~--g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~ 190 (510)
T PRK08071 132 LLEHLLQELV-PHVTVVEQEMVIDLIIEN--GRCIGVLTKDSEGKLKRYYADYVVLASGGCG 190 (510)
T ss_pred HHHHHHHHHh-cCCEEEECeEhhheeecC--CEEEEEEEEECCCcEEEEEcCeEEEecCCCc
Confidence 6677777665 589999999999998765 67888766 232 688999999997754
No 153
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.14 E-value=1.2 Score=44.73 Aligned_cols=56 Identities=21% Similarity=0.261 Sum_probs=44.4
Q ss_pred HhHHHHHHHHHH-cCCeEecCceeeeEEecCCCCeEEEEEe----CCe--EEecCEEEEecChhh
Q 016211 163 KIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (393)
Q Consensus 163 ~l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VI~a~p~~~ 220 (393)
.+.+.|.+.+.+ .|++|+.++.|++|..++ +++.||.. +|+ .+.|+.||+|+....
T Consensus 138 ~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (577)
T PRK06069 138 YIMHTLYSRALRFDNIHFYDEHFVTSLIVEN--GVFKGVTAIDLKRGEFKVFQAKAGIIATGGAG 200 (577)
T ss_pred HHHHHHHHHHHhcCCCEEEECCEEEEEEEEC--CEEEEEEEEEcCCCeEEEEECCcEEEcCchhc
Confidence 367888887766 588999999999999876 67877754 354 589999999998864
No 154
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.02 E-value=0.84 Score=46.13 Aligned_cols=55 Identities=20% Similarity=0.271 Sum_probs=43.6
Q ss_pred HhHHHHHHHHHHc--------C-----CeEecCceeeeEEecCCCCeEEEEEe----CCe--EEecCEEEEecChh
Q 016211 163 KIFEPWMDSMRTR--------G-----CEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIS 219 (393)
Q Consensus 163 ~l~~~l~~~l~~~--------G-----~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VI~a~p~~ 219 (393)
-+.+.|.+.+++. | ++|..++.|++|..++ |++.+|.. +|+ .+.|++||+|+...
T Consensus 139 ~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~~--g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~ 212 (626)
T PRK07803 139 ELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKDG--GRIAGAFGYWRESGRFVLFEAPAVVLATGGI 212 (626)
T ss_pred HHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEEC--CEEEEEEEEECCCCeEEEEEcCeEEECCCcc
Confidence 3778888877766 6 8999999999999865 67877754 353 58999999999973
No 155
>PRK06184 hypothetical protein; Provisional
Probab=90.93 E-value=1 Score=44.34 Aligned_cols=60 Identities=18% Similarity=0.167 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe----CCeEEecCEEEEecChhh-HHHHhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKETYSAGAVVLAVGIST-LQELIK 226 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~~~~ad~VI~a~p~~~-~~~Ll~ 226 (393)
+-+.|.+.+++.|++|+++++|++|+.+++ .+. +++ ++++++||.||.|...+. +.+.+.
T Consensus 111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~~--~v~-v~~~~~~~~~~i~a~~vVgADG~~S~vR~~lg 175 (502)
T PRK06184 111 TERILRERLAELGHRVEFGCELVGFEQDAD--GVT-ARVAGPAGEETVRARYLVGADGGRSFVRKALG 175 (502)
T ss_pred HHHHHHHHHHHCCCEEEeCcEEEEEEEcCC--cEE-EEEEeCCCeEEEEeCEEEECCCCchHHHHhCC
Confidence 555677778788999999999999998774 354 333 357899999999999876 344443
No 156
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=90.87 E-value=0.93 Score=45.65 Aligned_cols=55 Identities=20% Similarity=0.226 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHcC-CeEecCceeeeEEecCCCCeEEEEEe----CCe--EEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~G-~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VI~a~p~~~ 220 (393)
+.+.|.+.+++.| ++|+.++.|.+|..++ +++.+|.. +|+ ++.|+.||+|+....
T Consensus 134 ~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (608)
T PRK06854 134 YKPIVAEAAKKALGDNVLNRVFITDLLVDD--NRIAGAVGFSVRENKFYVFKAKAVIVATGGAA 195 (608)
T ss_pred HHHHHHHHHHhcCCCEEEeCCEEEEEEEeC--CEEEEEEEEEccCCcEEEEECCEEEECCCchh
Confidence 5567777777766 8999999999998765 56777743 343 689999999999754
No 157
>PRK13748 putative mercuric reductase; Provisional
Probab=90.75 E-value=0.84 Score=45.54 Aligned_cols=54 Identities=19% Similarity=0.252 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~~ 220 (393)
+.+.+.+.+++.|++|++++.|++|..++ +.+. +.++++++.+|.||+|+....
T Consensus 312 ~~~~l~~~l~~~gI~i~~~~~v~~i~~~~--~~~~-v~~~~~~i~~D~vi~a~G~~p 365 (561)
T PRK13748 312 IGEAVTAAFRAEGIEVLEHTQASQVAHVD--GEFV-LTTGHGELRADKLLVATGRAP 365 (561)
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEEEEecC--CEEE-EEecCCeEEeCEEEEccCCCc
Confidence 56677788888999999999999998765 4343 555555799999999987643
No 158
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=90.53 E-value=1.2 Score=43.42 Aligned_cols=53 Identities=17% Similarity=0.298 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe---CC--eEEecCEEEEecChh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK--ETYSAGAVVLAVGIS 219 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g--~~~~ad~VI~a~p~~ 219 (393)
+.+.+.+.+++.|++|+++++|++|..++ +.+. +.+ +| +++++|.||+++...
T Consensus 215 ~~~~l~~~l~~~gV~i~~~~~v~~i~~~~--~~~~-v~~~~~~g~~~~i~~D~vi~a~G~~ 272 (466)
T PRK07818 215 VSKEIAKQYKKLGVKILTGTKVESIDDNG--SKVT-VTVSKKDGKAQELEADKVLQAIGFA 272 (466)
T ss_pred HHHHHHHHHHHCCCEEEECCEEEEEEEeC--CeEE-EEEEecCCCeEEEEeCEEEECcCcc
Confidence 56778888889999999999999998654 3343 332 45 479999999998754
No 159
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=90.47 E-value=0.37 Score=44.65 Aligned_cols=68 Identities=16% Similarity=0.130 Sum_probs=51.3
Q ss_pred cCCchhHhHHHHHH----HHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhhHHHHhhc
Q 016211 157 RGTLREKIFEPWMD----SMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELIKN 227 (393)
Q Consensus 157 ~gG~~~~l~~~l~~----~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~~~~Ll~~ 227 (393)
++.|..++++-|.+ ++++.|++|+-|..|.++.... +.+. +.+ ||.+++.|+||+|+.-.--..|...
T Consensus 384 k~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~--~nl~-lkL~dG~~l~tD~vVvavG~ePN~ela~~ 456 (659)
T KOG1346|consen 384 KYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCC--KNLV-LKLSDGSELRTDLVVVAVGEEPNSELAEA 456 (659)
T ss_pred cCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhc--cceE-EEecCCCeeeeeeEEEEecCCCchhhccc
Confidence 47888877777744 4777899999999999999876 3453 555 6889999999999876544445443
No 160
>PLN02697 lycopene epsilon cyclase
Probab=90.32 E-value=1 Score=44.30 Aligned_cols=54 Identities=13% Similarity=0.243 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~ 220 (393)
+.+.|.+.+.+.|+++ +++.|++|..+++ .+..+++ +|++++|+.||.|..++.
T Consensus 194 L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~--~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 194 LHEELLRRCVESGVSY-LSSKVDRITEASD--GLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred HHHHHHHHHHhcCCEE-EeeEEEEEEEcCC--cEEEEEEcCCcEEECCEEEECCCcCh
Confidence 5567777777789988 7889999987763 3443444 678899999999999987
No 161
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=90.19 E-value=1.2 Score=43.10 Aligned_cols=53 Identities=13% Similarity=0.137 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCC--eEEecCEEEEecChh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK--ETYSAGAVVLAVGIS 219 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g--~~~~ad~VI~a~p~~ 219 (393)
+.+.+.+.+++.|++|++++.|++|..++ +.+. +..+| +++.||.||+|+...
T Consensus 213 ~~~~l~~~L~~~GI~i~~~~~V~~i~~~~--~~v~-~~~~g~~~~i~~D~vivA~G~~ 267 (458)
T PRK06912 213 IAHILREKLENDGVKIFTGAALKGLNSYK--KQAL-FEYEGSIQEVNAEFVLVSVGRK 267 (458)
T ss_pred HHHHHHHHHHHCCCEEEECCEEEEEEEcC--CEEE-EEECCceEEEEeCEEEEecCCc
Confidence 56677788888999999999999998654 3332 34444 368999999998854
No 162
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=90.17 E-value=0.84 Score=43.78 Aligned_cols=59 Identities=22% Similarity=0.268 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChhhHHHHhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIK 226 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~~~~~Ll~ 226 (393)
+.+.+.+.+++.|+++++++.|.+|..++ .+ .+..+|+++.||.||++++...-..++.
T Consensus 181 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~---~~-v~~~~g~~i~~D~vi~a~G~~p~~~~l~ 239 (427)
T TIGR03385 181 MNQIVEEELKKHEINLRLNEEVDSIEGEE---RV-KVFTSGGVYQADMVILATGIKPNSELAK 239 (427)
T ss_pred HHHHHHHHHHHcCCEEEeCCEEEEEecCC---CE-EEEcCCCEEEeCEEEECCCccCCHHHHH
Confidence 55667778888999999999999997543 23 2334788899999999988764334443
No 163
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=90.15 E-value=1.2 Score=43.37 Aligned_cols=54 Identities=11% Similarity=0.211 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-C--C--eEEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G--K--ETYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~--g--~~~~ad~VI~a~p~~~ 220 (393)
+.+.+.+.+++.|++|++++.|++|..++ +.+. +.. + | +++.+|.||+++....
T Consensus 226 ~~~~~~~~l~~~gi~i~~~~~v~~i~~~~--~~v~-v~~~~~~g~~~~i~~D~vl~a~G~~p 284 (475)
T PRK06327 226 VAKEAAKAFTKQGLDIHLGVKIGEIKTGG--KGVS-VAYTDADGEAQTLEVDKLIVSIGRVP 284 (475)
T ss_pred HHHHHHHHHHHcCcEEEeCcEEEEEEEcC--CEEE-EEEEeCCCceeEEEcCEEEEccCCcc
Confidence 56777888888999999999999998765 3343 443 3 3 4699999999987543
No 164
>PRK08163 salicylate hydroxylase; Provisional
Probab=90.00 E-value=1.2 Score=42.25 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHcC-CeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhhH
Q 016211 164 IFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL 221 (393)
Q Consensus 164 l~~~l~~~l~~~G-~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~~ 221 (393)
+.+.|.+.+.+.+ ++|+.++.|++|..++ +.+. |++ +|+++.||.||.|...+..
T Consensus 111 l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~-v~~~~g~~~~ad~vV~AdG~~S~ 167 (396)
T PRK08163 111 IHLSLLEAVLDHPLVEFRTSTHVVGIEQDG--DGVT-VFDQQGNRWTGDALIGCDGVKSV 167 (396)
T ss_pred HHHHHHHHHHhcCCcEEEeCCEEEEEecCC--CceE-EEEcCCCEEecCEEEECCCcChH
Confidence 5566777776665 7999999999999776 3454 444 6778999999999988753
No 165
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=89.93 E-value=1.9 Score=43.16 Aligned_cols=58 Identities=26% Similarity=0.206 Sum_probs=45.2
Q ss_pred hhHhHHHHHHHHHHc-CCeEecCceeeeEEecCCCCeEEEEEe----CC--eEEecCEEEEecChhh
Q 016211 161 REKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIST 220 (393)
Q Consensus 161 ~~~l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g--~~~~ad~VI~a~p~~~ 220 (393)
+..|.+.|.+.+.+. +++|..++.|++|..++ ++|.||.. +| ..+.|+.||+|+....
T Consensus 131 G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (580)
T TIGR01176 131 GFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDD--GRVCGLVAIEMAEGRLVTILADAVVLATGGAG 195 (580)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeC--CEEEEEEEEEcCCCcEEEEecCEEEEcCCCCc
Confidence 334778888877664 68999999999999876 67888764 35 3688999999998754
No 166
>PRK07045 putative monooxygenase; Reviewed
Probab=89.84 E-value=1.4 Score=41.60 Aligned_cols=60 Identities=10% Similarity=0.103 Sum_probs=45.0
Q ss_pred hHHHHHHHHHH-cCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhh-HHHH
Q 016211 164 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQEL 224 (393)
Q Consensus 164 l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~-~~~L 224 (393)
+.+.|.+.+.+ .|++|+++++|+.|+.+++ +.++.|++ +|+++++|.||.|..... +.+.
T Consensus 108 l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~~~v~~~~g~~~~~~~vIgADG~~S~vR~~ 170 (388)
T PRK07045 108 LRRLLLAKLDGLPNVRLRFETSIERIERDAD-GTVTSVTLSDGERVAPTVLVGADGARSMIRDD 170 (388)
T ss_pred HHHHHHHHHhcCCCeeEEeCCEEEEEEECCC-CcEEEEEeCCCCEEECCEEEECCCCChHHHHH
Confidence 55666666654 4689999999999998765 33444666 578899999999999876 4553
No 167
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=89.75 E-value=1.2 Score=40.18 Aligned_cols=52 Identities=23% Similarity=0.304 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~ 219 (393)
+.+.+.+.+++.|+++++ +.|.+|..++ +.+. |.+ +|+++.+|.||+|+...
T Consensus 59 ~~~~l~~~~~~~gv~~~~-~~v~~v~~~~--~~~~-v~~~~~~~~~~d~liiAtG~~ 111 (300)
T TIGR01292 59 LMEKMKEQAVKFGAEIIY-EEVIKVDLSD--RPFK-VKTGDGKEYTAKAVIIATGAS 111 (300)
T ss_pred HHHHHHHHHHHcCCeEEE-EEEEEEEecC--CeeE-EEeCCCCEEEeCEEEECCCCC
Confidence 556777778888999999 8999998865 3343 555 56789999999999874
No 168
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=89.74 E-value=0.96 Score=43.38 Aligned_cols=51 Identities=16% Similarity=0.208 Sum_probs=39.7
Q ss_pred hHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecCh
Q 016211 162 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGI 218 (393)
Q Consensus 162 ~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~ 218 (393)
..+.+.+.+.+++.|++|+++++|.+|.. +.+. ..+|+++.||.||++++.
T Consensus 228 ~~~~~~~~~~L~~~gV~v~~~~~v~~v~~----~~v~--~~~g~~i~~d~vi~~~G~ 278 (424)
T PTZ00318 228 QALRKYGQRRLRRLGVDIRTKTAVKEVLD----KEVV--LKDGEVIPTGLVVWSTGV 278 (424)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeEEEEeC----CEEE--ECCCCEEEccEEEEccCC
Confidence 33667778889999999999999999963 2232 336888999999998764
No 169
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=89.66 E-value=0.63 Score=45.90 Aligned_cols=96 Identities=14% Similarity=0.114 Sum_probs=63.9
Q ss_pred hhcCCCcccccHHHHHHHHHHHHhhccCCcceEEec-CCchh-HhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEE
Q 016211 122 VGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCR-GTLRE-KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISD 199 (393)
Q Consensus 122 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-gG~~~-~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~ 199 (393)
..++...+-+|-.....++-.+-.+.- -..+..|. |-|.- .++++++..+.+.|+.|.-|+||++|....++ ..+
T Consensus 146 ~a~g~e~~lLsPee~~~~~pLLn~d~v-~g~Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~--~~g 222 (856)
T KOG2844|consen 146 KAHGVESELLSPEETQELFPLLNVDDV-YGGLYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETDK--FGG 222 (856)
T ss_pred hhccceeeecCHHHHHHhCcccchhHh-eeeeecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCC--ccc
Confidence 356666666676654443322100110 11233343 33322 36788888889999999999999999988752 558
Q ss_pred EEeCCeEEecCEEEEecChhh
Q 016211 200 VVCGKETYSAGAVVLAVGIST 220 (393)
Q Consensus 200 v~~~g~~~~ad~VI~a~p~~~ 220 (393)
|.+.-..+++.+||-|+..++
T Consensus 223 VeT~~G~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 223 VETPHGSIETECVVNAAGVWA 243 (856)
T ss_pred eeccCcceecceEEechhHHH
Confidence 888655689999999999987
No 170
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=89.61 E-value=1.1 Score=46.60 Aligned_cols=54 Identities=15% Similarity=0.209 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~ 220 (393)
..+.+.+.+++.|++|++++.|++|..++ ++.+|++ +|+++.+|.||++++...
T Consensus 184 ~~~~l~~~l~~~GV~v~~~~~v~~i~~~~---~~~~v~~~dG~~i~~D~Vi~a~G~~P 238 (785)
T TIGR02374 184 AGRLLQRELEQKGLTFLLEKDTVEIVGAT---KADRIRFKDGSSLEADLIVMAAGIRP 238 (785)
T ss_pred HHHHHHHHHHHcCCEEEeCCceEEEEcCC---ceEEEEECCCCEEEcCEEEECCCCCc
Confidence 34556777888999999999999997543 3455665 688899999999988653
No 171
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=89.42 E-value=2 Score=43.06 Aligned_cols=58 Identities=19% Similarity=0.205 Sum_probs=44.0
Q ss_pred hhHhHHHHHHHHHHc-CCeEecCceeeeEEecCCCCeEEEEEe----CC--eEEecCEEEEecChhh
Q 016211 161 REKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIST 220 (393)
Q Consensus 161 ~~~l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g--~~~~ad~VI~a~p~~~ 220 (393)
+..+.+.|.+.+.+. +++|..++.|++|..++ +++.||.. +| ..+.|+.||+|+....
T Consensus 132 G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 196 (582)
T PRK09231 132 GFHMLHTLFQTSLKYPQIQRFDEHFVLDILVDD--GHVRGLVAMNMMEGTLVQIRANAVVMATGGAG 196 (582)
T ss_pred HHHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeC--CEEEEEEEEEcCCCcEEEEECCEEEECCCCCc
Confidence 333667777776664 68999999999999876 67877654 35 3689999999998644
No 172
>PTZ00052 thioredoxin reductase; Provisional
Probab=89.41 E-value=1.5 Score=42.96 Aligned_cols=55 Identities=22% Similarity=0.172 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhhH
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL 221 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~~ 221 (393)
+.+.+.+.+++.|+++++++.|.+|...+ +.+. +.. +|+++.+|.||+++....-
T Consensus 224 ~~~~l~~~l~~~GV~i~~~~~v~~v~~~~--~~~~-v~~~~g~~i~~D~vl~a~G~~pn 279 (499)
T PTZ00052 224 CSEKVVEYMKEQGTLFLEGVVPINIEKMD--DKIK-VLFSDGTTELFDTVLYATGRKPD 279 (499)
T ss_pred HHHHHHHHHHHcCCEEEcCCeEEEEEEcC--CeEE-EEECCCCEEEcCEEEEeeCCCCC
Confidence 56777888889999999999999998755 3343 444 6788999999999877543
No 173
>PLN02815 L-aspartate oxidase
Probab=89.28 E-value=1.2 Score=44.53 Aligned_cols=57 Identities=12% Similarity=0.218 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHc-CCeEecCceeeeEEecCCCC--eEEEEEe----CCe--EEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERC--CISDVVC----GKE--TYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~--~v~~v~~----~g~--~~~ad~VI~a~p~~~ 220 (393)
+.+.|.+.+++. |++|..+++|++|..+++++ +|.||.. +|+ .+.|++||+|+.-..
T Consensus 157 i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 222 (594)
T PLN02815 157 IERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAG 222 (594)
T ss_pred HHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcce
Confidence 667888877665 78999999999999864423 3778765 343 568999999998654
No 174
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=89.26 E-value=1.8 Score=41.92 Aligned_cols=55 Identities=25% Similarity=0.263 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~ 220 (393)
+.+-|.+.+++.|++++.++ |++|..+++ |.+..|++ +|++++||.||=|+....
T Consensus 156 fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~-g~i~~v~~~~g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 156 FDQFLRRHAEERGVEVIEGT-VVDVELDED-GRITAVRLDDGRTIEADFFIDASGRRS 211 (454)
T ss_dssp HHHHHHHHHHHTT-EEEET--EEEEEE-TT-SEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred HHHHHHHHHhcCCCEEEeCE-EEEEEEcCC-CCEEEEEECCCCEEEEeEEEECCCccc
Confidence 54557777788899998875 888887765 67888888 688999999999998765
No 175
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=89.15 E-value=0.73 Score=45.64 Aligned_cols=51 Identities=20% Similarity=0.221 Sum_probs=39.1
Q ss_pred HcCCeEecCceeeeEEecCCCCeEEEEEe--CCe---EEecCEEEEecChhhHHHHhh
Q 016211 174 TRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE---TYSAGAVVLAVGISTLQELIK 226 (393)
Q Consensus 174 ~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~---~~~ad~VI~a~p~~~~~~Ll~ 226 (393)
+.+.+|++++.|++|..++ +++++|++ +++ .+.++.||+|..+-...+||-
T Consensus 206 r~nl~i~~~~~V~rI~~~~--~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl 261 (532)
T TIGR01810 206 RPNLEVQTRAFVTKINFEG--NRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQ 261 (532)
T ss_pred CCCeEEEeCCEEEEEEecC--CeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHH
Confidence 3468999999999999986 67888877 332 357899999998855555543
No 176
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=89.09 E-value=1.4 Score=43.56 Aligned_cols=53 Identities=15% Similarity=0.257 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~ 219 (393)
+.+.+.+.+++.|++++++++|.+|..++ +.+ .|.+ +|+++.+|.+|+|+...
T Consensus 269 l~~~l~~~l~~~gv~i~~~~~V~~I~~~~--~~~-~v~~~~g~~i~~d~lIlAtGa~ 322 (515)
T TIGR03140 269 LAANLEEHIKQYPIDLMENQRAKKIETED--GLI-VVTLESGEVLKAKSVIVATGAR 322 (515)
T ss_pred HHHHHHHHHHHhCCeEEcCCEEEEEEecC--CeE-EEEECCCCEEEeCEEEECCCCC
Confidence 55677777888899999999999998765 334 3555 57789999999999975
No 177
>PRK07588 hypothetical protein; Provisional
Probab=88.97 E-value=1.2 Score=42.24 Aligned_cols=57 Identities=11% Similarity=0.072 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhh-HHHH
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQEL 224 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~-~~~L 224 (393)
+.+.|.+.+. .|++|++++.|++|+.++ +.+. |++ +|++++||.||.|...+. +.+.
T Consensus 105 l~~~L~~~~~-~~v~i~~~~~v~~i~~~~--~~v~-v~~~~g~~~~~d~vIgADG~~S~vR~~ 163 (391)
T PRK07588 105 LAAAIYTAID-GQVETIFDDSIATIDEHR--DGVR-VTFERGTPRDFDLVIGADGLHSHVRRL 163 (391)
T ss_pred HHHHHHHhhh-cCeEEEeCCEEeEEEECC--CeEE-EEECCCCEEEeCEEEECCCCCccchhh
Confidence 4444555443 368999999999999876 4465 555 688899999999988765 4444
No 178
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=88.83 E-value=1.4 Score=41.60 Aligned_cols=60 Identities=10% Similarity=0.088 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHc-CCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhh-HHHHhh
Q 016211 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELIK 226 (393)
Q Consensus 164 l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~-~~~Ll~ 226 (393)
+.+.|.+.+++. |++|+.++.|+++..++ +.+. |.+ +|++++||.||.|...+. +.+.+.
T Consensus 114 l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~--~~~~-v~~~~g~~~~a~~vI~AdG~~S~vR~~~~ 176 (391)
T PRK08020 114 LQLALWQALEAHPNVTLRCPASLQALQRDD--DGWE-LTLADGEEIQAKLVIGADGANSQVRQMAG 176 (391)
T ss_pred HHHHHHHHHHcCCCcEEEcCCeeEEEEEcC--CeEE-EEECCCCEEEeCEEEEeCCCCchhHHHcC
Confidence 556677767666 88999999999998776 3343 555 577899999999999876 344443
No 179
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=88.80 E-value=1.5 Score=43.66 Aligned_cols=53 Identities=21% Similarity=0.237 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHc-CCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChh
Q 016211 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (393)
Q Consensus 164 l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~ 219 (393)
+...+.+.+++. |++| +.+.|.+|..++ +++.+|.+ +|.++.|+.||+|+...
T Consensus 102 y~kaL~e~L~~~~nV~I-~q~~V~~Li~e~--grV~GV~t~dG~~I~Ak~VIlATGTF 156 (618)
T PRK05192 102 YRAAMREILENQPNLDL-FQGEVEDLIVEN--GRVVGVVTQDGLEFRAKAVVLTTGTF 156 (618)
T ss_pred HHHHHHHHHHcCCCcEE-EEeEEEEEEecC--CEEEEEEECCCCEEECCEEEEeeCcc
Confidence 445566666655 6777 567899998876 56888888 57889999999999964
No 180
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=88.77 E-value=1.3 Score=48.36 Aligned_cols=57 Identities=23% Similarity=0.290 Sum_probs=42.7
Q ss_pred hHHHHHHHHHH---cCCeEecCceeeeEEecCC----C---CeEEEEEe------CCe--EEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRT---RGCEFLDGRRVTDFIYDEE----R---CCISDVVC------GKE--TYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~---~G~~i~l~~~V~~I~~~~~----~---~~v~~v~~------~g~--~~~ad~VI~a~p~~~ 220 (393)
+...|.+.+++ .|++|+++++|++++.+++ | ++|.||.+ +|+ .+.|+.||+|+.-..
T Consensus 546 i~~~l~~~~~~~~~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf~ 620 (1167)
T PTZ00306 546 IMRTLEDHIRTKLSGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFS 620 (1167)
T ss_pred HHHHHHHHHHhhccCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCcc
Confidence 55667776665 3899999999999998642 1 26888875 233 588999999998754
No 181
>PRK06370 mercuric reductase; Validated
Probab=88.59 E-value=1.9 Score=41.90 Aligned_cols=54 Identities=15% Similarity=0.252 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEE-EEEe-C-CeEEecCEEEEecChh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCIS-DVVC-G-KETYSAGAVVLAVGIS 219 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~-~v~~-~-g~~~~ad~VI~a~p~~ 219 (393)
+.+.+.+.+++.|++|++++.|.+|..+++ .+. .+.. + ++++.+|.||+|+...
T Consensus 214 ~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~--~~~v~~~~~~~~~~i~~D~Vi~A~G~~ 270 (463)
T PRK06370 214 VAAAVREILEREGIDVRLNAECIRVERDGD--GIAVGLDCNGGAPEITGSHILVAVGRV 270 (463)
T ss_pred HHHHHHHHHHhCCCEEEeCCEEEEEEEcCC--EEEEEEEeCCCceEEEeCEEEECcCCC
Confidence 556777788889999999999999987653 232 1222 2 4579999999998754
No 182
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=88.54 E-value=1.6 Score=41.19 Aligned_cols=58 Identities=16% Similarity=0.142 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHcC-CeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhh-HHHHh
Q 016211 164 IFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELI 225 (393)
Q Consensus 164 l~~~l~~~l~~~G-~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~-~~~Ll 225 (393)
+.+.|.+.+++.| ++++ ++.|++|..++ +.+. |++ +|+++.||.||.|...+. +.+.+
T Consensus 113 l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~--~~~~-v~~~~g~~~~a~~vI~adG~~S~vr~~~ 173 (388)
T PRK07608 113 IERALWAALRFQPNLTWF-PARAQGLEVDP--DAAT-LTLADGQVLRADLVVGADGAHSWVRSQA 173 (388)
T ss_pred HHHHHHHHHHhCCCcEEE-cceeEEEEecC--CeEE-EEECCCCEEEeeEEEEeCCCCchHHHhc
Confidence 6677888888877 8888 99999998776 3354 555 577899999999999864 44444
No 183
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=88.47 E-value=1.4 Score=43.45 Aligned_cols=54 Identities=20% Similarity=0.255 Sum_probs=39.8
Q ss_pred HcC-CeEecCceeeeEEecCCC-CeEEEEEe----CC--eEEecCEEEEecChhhHHHHhhc
Q 016211 174 TRG-CEFLDGRRVTDFIYDEER-CCISDVVC----GK--ETYSAGAVVLAVGISTLQELIKN 227 (393)
Q Consensus 174 ~~G-~~i~l~~~V~~I~~~~~~-~~v~~v~~----~g--~~~~ad~VI~a~p~~~~~~Ll~~ 227 (393)
+.+ .+|++++.|.+|+.++++ ++|.+|.. +| .++.|+.||+|...=...+||-.
T Consensus 225 ~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLLL~ 286 (544)
T TIGR02462 225 PSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQILVN 286 (544)
T ss_pred cCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHHHh
Confidence 344 799999999999987642 35777644 24 35899999999988777666533
No 184
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=88.32 E-value=1.6 Score=43.48 Aligned_cols=55 Identities=18% Similarity=0.282 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHc-CCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~ 220 (393)
+...+.+.+++. ++++. ...|+.+..+++ +++.+|.+ +|.++.||.||+|+.+..
T Consensus 98 y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~-g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 98 YRKAMRNALENQPNLSLF-QGEVEDLILEDN-DEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred HHHHHHHHHHcCCCcEEE-EeEEEEEEEecC-CcEEEEEECCCCEEECCEEEEccCccc
Confidence 445666667776 45665 557888876532 56888888 577899999999999984
No 185
>PTZ00058 glutathione reductase; Provisional
Probab=88.27 E-value=1.8 Score=43.03 Aligned_cols=55 Identities=15% Similarity=0.169 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeC-CeEEecCEEEEecChh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS 219 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~-g~~~~ad~VI~a~p~~ 219 (393)
+.+.+.+.+++.|++|++++.|.+|..+++ +++..+..+ ++++.+|.||+++.-.
T Consensus 280 i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~-~~v~v~~~~~~~~i~aD~VlvA~Gr~ 335 (561)
T PTZ00058 280 IINELENDMKKNNINIITHANVEEIEKVKE-KNLTIYLSDGRKYEHFDYVIYCVGRS 335 (561)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEecCC-CcEEEEECCCCEEEECCEEEECcCCC
Confidence 567778888889999999999999986543 234322224 4579999999998754
No 186
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=88.17 E-value=1.8 Score=42.71 Aligned_cols=53 Identities=15% Similarity=0.219 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~ 219 (393)
+.+.+.+.+++.|.+++++++|.+|...+ +.. .|.+ +|+++.||.||+|+...
T Consensus 268 l~~~l~~~~~~~gv~i~~~~~V~~I~~~~--~~~-~V~~~~g~~i~a~~vViAtG~~ 321 (517)
T PRK15317 268 LAAALEEHVKEYDVDIMNLQRASKLEPAA--GLI-EVELANGAVLKAKTVILATGAR 321 (517)
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEEEEecC--CeE-EEEECCCCEEEcCEEEECCCCC
Confidence 66777888888899999999999998875 333 3555 56789999999999984
No 187
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=88.06 E-value=2.2 Score=41.46 Aligned_cols=53 Identities=13% Similarity=0.143 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe--C--CeEEecCEEEEecChh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--G--KETYSAGAVVLAVGIS 219 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~--g~~~~ad~VI~a~p~~ 219 (393)
+.+.+.+.+++.|++|++++.|++|..++ +.+. +.+ + ++++.+|.||+|+...
T Consensus 209 ~~~~l~~~l~~~gV~i~~~~~V~~i~~~~--~~~~-v~~~~~~~~~~i~~D~ViiA~G~~ 265 (463)
T TIGR02053 209 ISAAVEEALAEEGIEVVTSAQVKAVSVRG--GGKI-ITVEKPGGQGEVEADELLVATGRR 265 (463)
T ss_pred HHHHHHHHHHHcCCEEEcCcEEEEEEEcC--CEEE-EEEEeCCCceEEEeCEEEEeECCC
Confidence 55667777888899999999999998765 2232 333 2 3679999999998753
No 188
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=88.03 E-value=2.3 Score=41.43 Aligned_cols=56 Identities=16% Similarity=0.232 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CC--eEEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK--ETYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g--~~~~ad~VI~a~p~~~ 220 (393)
+.+.+.+.+++.|++|++++.|++|..+++ +++..+.. +| +++.+|.||+|+....
T Consensus 223 ~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~-~~~~~~~~~~g~~~~i~~D~vi~a~G~~p 281 (472)
T PRK05976 223 LSKEVARLLKKLGVRVVTGAKVLGLTLKKD-GGVLIVAEHNGEEKTLEADKVLVSVGRRP 281 (472)
T ss_pred HHHHHHHHHHhcCCEEEeCcEEEEEEEecC-CCEEEEEEeCCceEEEEeCEEEEeeCCcc
Confidence 556777888889999999999999986211 23433433 55 4699999999988754
No 189
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=87.91 E-value=2.4 Score=41.49 Aligned_cols=53 Identities=17% Similarity=0.094 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CC---eEEecCEEEEecChh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK---ETYSAGAVVLAVGIS 219 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g---~~~~ad~VI~a~p~~ 219 (393)
+.+.+.+.+++.|++|++++.|.+|...+ +.+. |+. ++ +++.+|.||+|+...
T Consensus 222 ~~~~l~~~L~~~gV~i~~~~~v~~v~~~~--~~~~-v~~~~~~~~~~i~~D~vl~a~G~~ 278 (484)
T TIGR01438 222 CANKVGEHMEEHGVKFKRQFVPIKVEQIE--AKVK-VTFTDSTNGIEEEYDTVLLAIGRD 278 (484)
T ss_pred HHHHHHHHHHHcCCEEEeCceEEEEEEcC--CeEE-EEEecCCcceEEEeCEEEEEecCC
Confidence 56677788889999999999999998765 3343 443 43 479999999998764
No 190
>PRK06185 hypothetical protein; Provisional
Probab=87.76 E-value=2.2 Score=40.60 Aligned_cols=61 Identities=18% Similarity=0.160 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHc-CCeEecCceeeeEEecCCCCeEEEEEe---CC-eEEecCEEEEecChhh-HHHHhh
Q 016211 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC---GK-ETYSAGAVVLAVGIST-LQELIK 226 (393)
Q Consensus 164 l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g-~~~~ad~VI~a~p~~~-~~~Ll~ 226 (393)
+.+.|.+.+++. |++|+.++.|+++..++ +++.+|.+ +| .+++||.||.|...+. +.+.+.
T Consensus 110 l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~--~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~vr~~~g 176 (407)
T PRK06185 110 FLDFLAEEASAYPNFTLRMGAEVTGLIEEG--GRVTGVRARTPDGPGEIRADLVVGADGRHSRVRALAG 176 (407)
T ss_pred HHHHHHHHHhhCCCcEEEeCCEEEEEEEeC--CEEEEEEEEcCCCcEEEEeCEEEECCCCchHHHHHcC
Confidence 556676766654 78999999999999876 45655554 45 3799999999998875 444443
No 191
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=87.73 E-value=2.5 Score=42.46 Aligned_cols=59 Identities=19% Similarity=0.299 Sum_probs=43.5
Q ss_pred hhHhHHHHHHHHHHcC----CeEecCceeeeEEecCCCCeEEEEEe----CCe--EEecCEEEEecChhh
Q 016211 161 REKIFEPWMDSMRTRG----CEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (393)
Q Consensus 161 ~~~l~~~l~~~l~~~G----~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VI~a~p~~~ 220 (393)
+..+.+.|.+.+++.+ ++|..++.|+++..+++ |+|.||.+ +|+ .+.|++||+|+.-..
T Consensus 132 G~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 200 (589)
T PRK08641 132 GQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDE-GVCRGIVAQDLFTMEIESFPADAVIMATGGPG 200 (589)
T ss_pred HHHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCC-CEEEEEEEEECCCCcEEEEECCEEEECCCCCc
Confidence 3336677777665543 67899999999998644 67888876 233 478999999998765
No 192
>PRK09077 L-aspartate oxidase; Provisional
Probab=87.67 E-value=2.8 Score=41.57 Aligned_cols=61 Identities=18% Similarity=0.216 Sum_probs=44.9
Q ss_pred chhHhHHHHHHHHHHc-CCeEecCceeeeEEecC----CCCeEEEEEe----CCe--EEecCEEEEecChhh
Q 016211 160 LREKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDE----ERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (393)
Q Consensus 160 ~~~~l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~----~~~~v~~v~~----~g~--~~~ad~VI~a~p~~~ 220 (393)
.+..+...|.+.+.+. |++|..++.|.++..++ +++++.+|.. +|+ .+.|+.||+|+....
T Consensus 136 ~G~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~ 207 (536)
T PRK09077 136 TGKAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGAS 207 (536)
T ss_pred CHHHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCC
Confidence 3334667788877665 78999999999998753 1156888765 243 588999999998754
No 193
>PRK09126 hypothetical protein; Provisional
Probab=87.63 E-value=2.1 Score=40.50 Aligned_cols=59 Identities=22% Similarity=0.210 Sum_probs=42.6
Q ss_pred hHHHHHHHHH-HcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhh-HHHHh
Q 016211 164 IFEPWMDSMR-TRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELI 225 (393)
Q Consensus 164 l~~~l~~~l~-~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~-~~~Ll 225 (393)
+.+.+.+.+. ..|++|+.+++|++++.++ +.+. |.+ +|++++||.||.|..... +.+.+
T Consensus 112 l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~--~~~~-v~~~~g~~~~a~~vI~AdG~~S~vr~~~ 173 (392)
T PRK09126 112 IRRAAYEAVSQQDGIELLTGTRVTAVRTDD--DGAQ-VTLANGRRLTARLLVAADSRFSATRRQL 173 (392)
T ss_pred HHHHHHHHHhhCCCcEEEcCCeEEEEEEcC--CeEE-EEEcCCCEEEeCEEEEeCCCCchhhHhc
Confidence 4445555553 3589999999999998776 3353 554 678899999999999864 34444
No 194
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=87.56 E-value=2.6 Score=39.80 Aligned_cols=61 Identities=16% Similarity=0.205 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHcC-CeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhh-HHHHhh
Q 016211 164 IFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELIK 226 (393)
Q Consensus 164 l~~~l~~~l~~~G-~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~-~~~Ll~ 226 (393)
+.+.|.+.+++.+ ++++.++.|+.+..+++ .+..+.. +|++++||.||-|-..+. +.+.+.
T Consensus 106 l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~--~v~v~l~~dG~~~~a~llVgADG~~S~vR~~~~ 169 (387)
T COG0654 106 LLNALLEAARALPNVTLRFGAEVEAVEQDGD--GVTVTLSFDGETLDADLLVGADGANSAVRRAAG 169 (387)
T ss_pred HHHHHHHHHhhCCCcEEEcCceEEEEEEcCC--ceEEEEcCCCcEEecCEEEECCCCchHHHHhcC
Confidence 6678888888777 79999999999999884 4663333 688999999999999775 466655
No 195
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=87.47 E-value=2.4 Score=40.79 Aligned_cols=58 Identities=22% Similarity=0.265 Sum_probs=44.5
Q ss_pred CchhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCe--EEecCEEEEecChh
Q 016211 159 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKE--TYSAGAVVLAVGIS 219 (393)
Q Consensus 159 G~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~--~~~ad~VI~a~p~~ 219 (393)
++..-+.+.+.+.+++.|.+++++++|++++..++ .+. +.+ +|+ ++++|.|++|+.=.
T Consensus 211 ~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~--~v~-v~~~~g~~~~~~ad~vLvAiGR~ 271 (454)
T COG1249 211 GEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDD--GVL-VTLEDGEGGTIEADAVLVAIGRK 271 (454)
T ss_pred cCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCC--eEE-EEEecCCCCEEEeeEEEEccCCc
Confidence 34444778888888887789999999999998774 243 555 444 78899999998753
No 196
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=87.09 E-value=2.2 Score=39.27 Aligned_cols=61 Identities=25% Similarity=0.291 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe---CC--eEEecCEEEEecChhh-HHHHhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK--ETYSAGAVVLAVGIST-LQELIK 226 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g--~~~~ad~VI~a~p~~~-~~~Ll~ 226 (393)
+-+.|.+.+++.|++|+.+++|..+..+++ .+..+.. +| ++++||.||-|-..+. +.+.+.
T Consensus 113 l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~--~~~~~~~~~~~g~~~~i~adlvVgADG~~S~vR~~l~ 179 (356)
T PF01494_consen 113 LDRALREEAEERGVDIRFGTRVVSIEQDDD--GVTVVVRDGEDGEEETIEADLVVGADGAHSKVRKQLG 179 (356)
T ss_dssp HHHHHHHHHHHHTEEEEESEEEEEEEEETT--EEEEEEEETCTCEEEEEEESEEEE-SGTT-HHHHHTT
T ss_pred HHHhhhhhhhhhhhhheeeeeccccccccc--ccccccccccCCceeEEEEeeeecccCcccchhhhcc
Confidence 556777888888999999999999998874 3543333 24 3689999999998876 455544
No 197
>PRK10262 thioredoxin reductase; Provisional
Probab=86.98 E-value=1.8 Score=39.72 Aligned_cols=60 Identities=15% Similarity=0.266 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-C----C--eEEecCEEEEecChhhHHHHh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G----K--ETYSAGAVVLAVGISTLQELI 225 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~----g--~~~~ad~VI~a~p~~~~~~Ll 225 (393)
+.+.+.+.+++.|+++++++.|++|..++ +++.+|++ + + +++.+|.||+++....-..++
T Consensus 187 ~~~~~~~~l~~~gV~i~~~~~v~~v~~~~--~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~ 253 (321)
T PRK10262 187 LIKRLMDKVENGNIILHTNRTLEEVTGDQ--MGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIF 253 (321)
T ss_pred HHHHHHhhccCCCeEEEeCCEEEEEEcCC--ccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHh
Confidence 44666777778899999999999998654 33544544 1 1 469999999998765433343
No 198
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=86.86 E-value=1.2 Score=37.77 Aligned_cols=70 Identities=16% Similarity=0.168 Sum_probs=49.4
Q ss_pred EEecCCchhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChhhHHHHhhc
Q 016211 154 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKN 227 (393)
Q Consensus 154 ~~~~gG~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~~~~~Ll~~ 227 (393)
++|+|=.+.-+.+.+.++.++.|-+|.+. .|.++..+. .-. .+.++.+.+.||+||+|+.+.+-+--+|.
T Consensus 62 GFPdgi~G~~l~d~mrkqs~r~Gt~i~tE-tVskv~~ss--kpF-~l~td~~~v~~~avI~atGAsAkRl~~pg 131 (322)
T KOG0404|consen 62 GFPDGITGPELMDKMRKQSERFGTEIITE-TVSKVDLSS--KPF-KLWTDARPVTADAVILATGASAKRLHLPG 131 (322)
T ss_pred CCCcccccHHHHHHHHHHHHhhcceeeee-ehhhccccC--CCe-EEEecCCceeeeeEEEecccceeeeecCC
Confidence 45665444457788888888888888765 578888765 223 36667778999999999998653322444
No 199
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=86.79 E-value=2.4 Score=40.05 Aligned_cols=54 Identities=24% Similarity=0.345 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~ 220 (393)
+.+.+.+.+.+.|++++ ++.|..+..+++ + .+.|++ +|++++|+.||.|++...
T Consensus 87 l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~-~-~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 87 LHEELLQKCPEGGVLWL-ERKAIHAEADGV-A-LSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred HHHHHHHHHHhcCcEEE-ccEEEEEEecCC-c-eeEEEeCCCCEEEeCEEEECCCCch
Confidence 56777777777888885 668999887632 2 334666 566899999999999875
No 200
>PLN02463 lycopene beta cyclase
Probab=86.72 E-value=2.4 Score=40.86 Aligned_cols=53 Identities=23% Similarity=0.304 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~ 220 (393)
+-+.+.+.+.+.|++++ ++.|++|+.++ +++ .|++ +|++++||.||.|+....
T Consensus 116 L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~--~~~-~V~~~dG~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 116 LKSKMLERCIANGVQFH-QAKVKKVVHEE--SKS-LVVCDDGVKIQASLVLDATGFSR 169 (447)
T ss_pred HHHHHHHHHhhcCCEEE-eeEEEEEEEcC--CeE-EEEECCCCEEEcCEEEECcCCCc
Confidence 55667777777889886 67999999876 334 3666 577899999999998764
No 201
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=86.61 E-value=3.2 Score=40.34 Aligned_cols=54 Identities=24% Similarity=0.301 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEE-EEe--C--CeEEecCEEEEecChh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISD-VVC--G--KETYSAGAVVLAVGIS 219 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~-v~~--~--g~~~~ad~VI~a~p~~ 219 (393)
+.+.+.+.+++.|++|++++.|++|..+++ .+.. +.. + ++++++|.||+++...
T Consensus 217 ~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~--~v~v~~~~~~~g~~~~i~~D~vi~a~G~~ 275 (466)
T PRK06115 217 TAKTLQKALTKQGMKFKLGSKVTGATAGAD--GVSLTLEPAAGGAAETLQADYVLVAIGRR 275 (466)
T ss_pred HHHHHHHHHHhcCCEEEECcEEEEEEEcCC--eEEEEEEEcCCCceeEEEeCEEEEccCCc
Confidence 567778888899999999999999987542 2421 221 2 3579999999998764
No 202
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=86.57 E-value=2.6 Score=40.87 Aligned_cols=54 Identities=19% Similarity=-0.044 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHcCCe--EecCceeeeEEecCCCCeEEEEEe-C-C-e--EEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRTRGCE--FLDGRRVTDFIYDEERCCISDVVC-G-K-E--TYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~G~~--i~l~~~V~~I~~~~~~~~v~~v~~-~-g-~--~~~ad~VI~a~p~~~ 220 (393)
+.+-|.+.++..|.+ |++++.|++|...+ +++. |++ + + . +..+|+||+|+....
T Consensus 113 v~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~--~~w~-V~~~~~~~~~~~~~~d~VIvAtG~~~ 173 (461)
T PLN02172 113 VLAYLQDFAREFKIEEMVRFETEVVRVEPVD--GKWR-VQSKNSGGFSKDEIFDAVVVCNGHYT 173 (461)
T ss_pred HHHHHHHHHHHcCCcceEEecCEEEEEeecC--CeEE-EEEEcCCCceEEEEcCEEEEeccCCC
Confidence 556666667777876 99999999999875 4454 554 2 2 2 467999999999753
No 203
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=86.09 E-value=5.7 Score=36.71 Aligned_cols=97 Identities=16% Similarity=0.137 Sum_probs=59.0
Q ss_pred hcccCccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHhhccC---CcceEEecCCchhHhHHH
Q 016211 91 RKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQK---NFDLVWCRGTLREKIFEP 167 (393)
Q Consensus 91 ~~~d~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~---~~~~~~~~gG~~~~l~~~ 167 (393)
+.+++.|..||+...++... ||..++...-+.. =-|+..+..++.+++..-.+ -+.+.+-+=...+.++-+
T Consensus 159 E~L~~~tI~d~Fse~FF~sN----FW~yW~tmFAFek--WhSa~EmRRY~mRfihhi~gl~dfs~lkftkyNQYeSlvlP 232 (587)
T COG4716 159 EKLDDLTIEDWFSEDFFKSN----FWYYWQTMFAFEK--WHSAFEMRRYMMRFIHHISGLPDFSALKFTKYNQYESLVLP 232 (587)
T ss_pred HhcCCccHHHhhhHhhhhhh----HHHHHHHHHhhhH--HHHHHHHHHHHHHHHHHhcCCCcchhhcccccchHHHHHHH
Confidence 35799999999998766444 3333332211111 12555555444444211111 112223333444558899
Q ss_pred HHHHHHHcCCeEecCceeeeEEecCC
Q 016211 168 WMDSMRTRGCEFLDGRRVTDFIYDEE 193 (393)
Q Consensus 168 l~~~l~~~G~~i~l~~~V~~I~~~~~ 193 (393)
|...|+++|+++.+++.|..|..+..
T Consensus 233 li~yL~~H~Vdf~~~~~Vedi~v~~t 258 (587)
T COG4716 233 LITYLKSHGVDFTYDQKVEDIDVDDT 258 (587)
T ss_pred HHHHHHHcCCceEeccEEeeeeeccC
Confidence 99999999999999999999998754
No 204
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=86.00 E-value=2.7 Score=39.67 Aligned_cols=54 Identities=17% Similarity=0.161 Sum_probs=40.6
Q ss_pred hHHHHHHHHHH-cCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~ 220 (393)
+.+.|.+.+.+ .|++|+.+++|++|..++ +.+. |++ +|++++||.||.|...+.
T Consensus 114 l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~--~~~~-v~~~~g~~~~a~~vI~AdG~~S 169 (395)
T PRK05732 114 VGQRLFALLDKAPGVTLHCPARVANVERTQ--GSVR-VTLDDGETLTGRLLVAADGSHS 169 (395)
T ss_pred HHHHHHHHHhcCCCcEEEcCCEEEEEEEcC--CeEE-EEECCCCEEEeCEEEEecCCCh
Confidence 34456666655 478999999999998766 3454 555 577899999999998875
No 205
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=85.91 E-value=2.4 Score=39.87 Aligned_cols=54 Identities=26% Similarity=0.187 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhhH
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL 221 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~~ 221 (393)
+-+.+.+.++ .++.+++++.|++|+.+++ .+. |++ +|++++|+.||-|.++...
T Consensus 89 f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~--~~~-v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 89 FYEFLLERAA-AGGVIRLNARVTSIEETGD--GVL-VVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred HHHHHHHHhh-hCCeEEEccEEEEEEecCc--eEE-EEECCCCEEEeeEEEECCCcccc
Confidence 5566677776 5677899999999998873 243 455 6789999999999886543
No 206
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=85.89 E-value=2.7 Score=39.55 Aligned_cols=60 Identities=5% Similarity=0.154 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHcC-CeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChhh-HHHHhh
Q 016211 164 IFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST-LQELIK 226 (393)
Q Consensus 164 l~~~l~~~l~~~G-~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~~-~~~Ll~ 226 (393)
+.+.|.+.+++.+ .+++.++.|++|..+++ .+. |.+++++++||.||-|-..+. +.+.+.
T Consensus 106 L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~-v~~~~~~~~adlvIgADG~~S~vR~~l~ 167 (374)
T PRK06617 106 FKKILLSKITNNPLITLIDNNQYQEVISHND--YSI-IKFDDKQIKCNLLIICDGANSKVRSHYF 167 (374)
T ss_pred HHHHHHHHHhcCCCcEEECCCeEEEEEEcCC--eEE-EEEcCCEEeeCEEEEeCCCCchhHHhcC
Confidence 5567777777765 78999999999998774 354 666555899999999999875 455543
No 207
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=85.79 E-value=2.4 Score=40.02 Aligned_cols=59 Identities=19% Similarity=0.055 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhh-HHHHh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELI 225 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~-~~~Ll 225 (393)
+.+.|.+.+++.++.++.++.|.+|..+++ .+. |++ +|++++||.||.|...+. +.+.+
T Consensus 113 l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~--~~~-v~~~~g~~~~a~~vI~AdG~~S~vr~~~ 173 (388)
T PRK07494 113 LNRALEARVAELPNITRFGDEAESVRPRED--EVT-VTLADGTTLSARLVVGADGRNSPVREAA 173 (388)
T ss_pred HHHHHHHHHhcCCCcEEECCeeEEEEEcCC--eEE-EEECCCCEEEEeEEEEecCCCchhHHhc
Confidence 567777777777655589999999988763 454 555 577899999999998864 34443
No 208
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=85.49 E-value=1.8 Score=39.05 Aligned_cols=61 Identities=26% Similarity=0.300 Sum_probs=43.5
Q ss_pred hHHHHHHHHHH----c--CCeEecCceeeeEEecCCCCeEEEEEe---CCe--EEecCEEEEecChhhH--HHHhh
Q 016211 164 IFEPWMDSMRT----R--GCEFLDGRRVTDFIYDEERCCISDVVC---GKE--TYSAGAVVLAVGISTL--QELIK 226 (393)
Q Consensus 164 l~~~l~~~l~~----~--G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g~--~~~ad~VI~a~p~~~~--~~Ll~ 226 (393)
|+.+|..++++ . -++|.+|++|+.|...+ |+|.+|.. +|+ .+.+++||+|+.-..+ ..||.
T Consensus 141 i~~~L~~~l~k~as~~pe~~ki~~nskvv~il~n~--gkVsgVeymd~sgek~~~~~~~VVlatGGf~ysd~~lLK 214 (477)
T KOG2404|consen 141 IVKALSTRLKKKASENPELVKILLNSKVVDILRNN--GKVSGVEYMDASGEKSKIIGDAVVLATGGFGYSDKELLK 214 (477)
T ss_pred HHHHHHHHHHHhhhcChHHHhhhhcceeeeeecCC--CeEEEEEEEcCCCCccceecCceEEecCCcCcChHHHHH
Confidence 45555555443 2 26899999999999766 67888876 353 4789999999987765 34543
No 209
>PRK07846 mycothione reductase; Reviewed
Probab=85.29 E-value=3.2 Score=40.21 Aligned_cols=57 Identities=19% Similarity=0.261 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhhHHHH
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQEL 224 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~~~~L 224 (393)
+.+.+.+ +.+.|++++++++|++|..++ +.+. |.+ +|+++.||.||+|+....-..+
T Consensus 209 ~~~~l~~-l~~~~v~i~~~~~v~~i~~~~--~~v~-v~~~~g~~i~~D~vl~a~G~~pn~~~ 266 (451)
T PRK07846 209 ISERFTE-LASKRWDVRLGRNVVGVSQDG--SGVT-LRLDDGSTVEADVLLVATGRVPNGDL 266 (451)
T ss_pred HHHHHHH-HHhcCeEEEeCCEEEEEEEcC--CEEE-EEECCCcEeecCEEEEEECCccCccc
Confidence 4444443 335689999999999998765 3343 454 5778999999999876543333
No 210
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=85.27 E-value=4 Score=37.77 Aligned_cols=62 Identities=16% Similarity=0.334 Sum_probs=46.5
Q ss_pred CCchhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe----CC--eEEecCEEEEecChhhH
Q 016211 158 GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGISTL 221 (393)
Q Consensus 158 gG~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g--~~~~ad~VI~a~p~~~~ 221 (393)
++|..-+..+..+.|+..|.+++++|+|..+..++| |.+. |.+ ++ ++++||.+.+++.-.-+
T Consensus 248 ~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~d-g~v~-i~ve~ak~~k~~tle~DvlLVsiGRrP~ 315 (506)
T KOG1335|consen 248 GVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGD-GPVE-IEVENAKTGKKETLECDVLLVSIGRRPF 315 (506)
T ss_pred cccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCC-CceE-EEEEecCCCceeEEEeeEEEEEccCccc
Confidence 445444667777778888999999999999999987 4554 443 23 57999999998875543
No 211
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=85.07 E-value=2.9 Score=39.77 Aligned_cols=60 Identities=17% Similarity=0.178 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHc-CCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhh-HHHHhh
Q 016211 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELIK 226 (393)
Q Consensus 164 l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~-~~~Ll~ 226 (393)
+.+.|.+.+.+. |++|+++++|++|..+++ .+. |++ +|++++||.||.|...+. +.+.+.
T Consensus 113 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~--~~~-v~~~~g~~~~a~lvIgADG~~S~vR~~~~ 175 (405)
T PRK08850 113 IQLALLEQVQKQDNVTLLMPARCQSIAVGES--EAW-LTLDNGQALTAKLVVGADGANSWLRRQMD 175 (405)
T ss_pred HHHHHHHHHhcCCCeEEEcCCeeEEEEeeCC--eEE-EEECCCCEEEeCEEEEeCCCCChhHHHcC
Confidence 445666666554 689999999999988763 354 555 678899999999999864 455443
No 212
>PLN02661 Putative thiazole synthesis
Probab=84.88 E-value=4.1 Score=37.67 Aligned_cols=54 Identities=17% Similarity=0.221 Sum_probs=41.2
Q ss_pred hHHHHHHHHHH-cCCeEecCceeeeEEecCCCCeEEEEEe-------C--C------eEEecCEEEEecChh
Q 016211 164 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC-------G--K------ETYSAGAVVLAVGIS 219 (393)
Q Consensus 164 l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~-------~--g------~~~~ad~VI~a~p~~ 219 (393)
+...|.+.+.+ .|++|+.++.|.++..++ +++.||.+ + + ..++|++||+|+...
T Consensus 174 ~~stLi~ka~~~~gVkI~~~t~V~DLI~~~--grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~ 243 (357)
T PLN02661 174 FTSTIMSKLLARPNVKLFNAVAAEDLIVKG--DRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHD 243 (357)
T ss_pred HHHHHHHHHHhcCCCEEEeCeEeeeEEecC--CEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCC
Confidence 45667765544 578999999999999887 67888774 1 1 268999999999854
No 213
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=84.87 E-value=2.5 Score=39.82 Aligned_cols=45 Identities=20% Similarity=0.178 Sum_probs=36.1
Q ss_pred HHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChh
Q 016211 170 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (393)
Q Consensus 170 ~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~ 219 (393)
+.+++.|++++++++|++|..++ .. |.++++++.+|++|+|+...
T Consensus 66 ~~~~~~gv~~~~~~~V~~id~~~--~~---v~~~~~~~~yd~LVlATG~~ 110 (377)
T PRK04965 66 EFAEQFNLRLFPHTWVTDIDAEA--QV---VKSQGNQWQYDKLVLATGAS 110 (377)
T ss_pred HHHHhCCCEEECCCEEEEEECCC--CE---EEECCeEEeCCEEEECCCCC
Confidence 33456799999999999998765 22 45688889999999999975
No 214
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=84.86 E-value=3 Score=40.31 Aligned_cols=51 Identities=24% Similarity=0.224 Sum_probs=37.4
Q ss_pred HHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe----------CC-----------eEEecCEEEEecChh
Q 016211 168 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----------GK-----------ETYSAGAVVLAVGIS 219 (393)
Q Consensus 168 l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----------~g-----------~~~~ad~VI~a~p~~ 219 (393)
..+.+++.|++|++++.+++|..+++ |++.+|.+ +| .++.+|.||+|+...
T Consensus 315 ~~~~l~~~GV~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~ 386 (449)
T TIGR01316 315 EIAHAEEEGVKFHFLCQPVEIIGDEE-GNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNG 386 (449)
T ss_pred HHHHHHhCCCEEEeccCcEEEEEcCC-CeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCC
Confidence 34567788999999999999986543 55655543 12 268999999998763
No 215
>PRK08013 oxidoreductase; Provisional
Probab=84.77 E-value=3 Score=39.58 Aligned_cols=60 Identities=15% Similarity=0.130 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHc-CCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhh-HHHHhh
Q 016211 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELIK 226 (393)
Q Consensus 164 l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~-~~~Ll~ 226 (393)
+-+.|.+.+++. |++|+.++.|++|+.+++ .+. |++ +|++++||.||-|-..+. +.+.+.
T Consensus 113 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~--~v~-v~~~~g~~i~a~lvVgADG~~S~vR~~~~ 175 (400)
T PRK08013 113 IHYALWQKAQQSSDITLLAPAELQQVAWGEN--EAF-LTLKDGSMLTARLVVGADGANSWLRNKAD 175 (400)
T ss_pred HHHHHHHHHhcCCCcEEEcCCeeEEEEecCC--eEE-EEEcCCCEEEeeEEEEeCCCCcHHHHHcC
Confidence 556667777665 689999999999988764 354 444 688899999999999875 455543
No 216
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=84.50 E-value=1.6 Score=39.23 Aligned_cols=114 Identities=9% Similarity=0.013 Sum_probs=72.4
Q ss_pred cCccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHhhccC--CcceEEecCCchhHhHHHHHHH
Q 016211 94 DSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQK--NFDLVWCRGTLREKIFEPWMDS 171 (393)
Q Consensus 94 d~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~~~gG~~~~l~~~l~~~ 171 (393)
+-.++.+-.-+. ++..++++++.++...-||.+|+++++.....+=-++...+.- ..--+.|++|... +.+.|
T Consensus 130 ~~q~~ee~ais~-vg~~LY~~f~kgYT~KQWG~~p~eLpasvi~RvPVr~~~dn~YF~d~yQGlP~~GYT~-~~~kM--- 204 (374)
T COG0562 130 EPQNLEEQAISL-VGRDLYEAFFKGYTEKQWGLDPKELPASVIKRLPVRLNFDNRYFSDTYQGLPKDGYTA-MFEKM--- 204 (374)
T ss_pred chhhhhhHHHHH-HHHHHHHHHhccccHHHhCCChHHCCHHHhcccceEEcccCcccCcccccCccccHHH-HHHHH---
Confidence 445666655553 7889999999999999999999999988654321111000000 0012557788544 33333
Q ss_pred HHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChhhHHHH
Q 016211 172 MRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQEL 224 (393)
Q Consensus 172 l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~~~~~L 224 (393)
+..-..+|+|||.-..|..... + +.+..||.+-|.+.+-.-
T Consensus 205 l~hp~I~V~Lntd~~~~~~~~~----------~--~~~~~VvytG~iD~~Fdy 245 (374)
T COG0562 205 LDHPNIDVRLNTDFFDVKDQLR----------A--IPFAPVVYTGPIDAYFDY 245 (374)
T ss_pred hcCCCceEEecCcHHHHhhhhc----------c--cCCCceEEecchHhhhcc
Confidence 3344679999998887764431 1 345689999998886543
No 217
>PLN02546 glutathione reductase
Probab=84.49 E-value=4.6 Score=40.19 Aligned_cols=59 Identities=20% Similarity=0.257 Sum_probs=41.7
Q ss_pred chhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeE-EecCEEEEecChhh
Q 016211 160 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKET-YSAGAVVLAVGIST 220 (393)
Q Consensus 160 ~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~-~~ad~VI~a~p~~~ 220 (393)
+..-+.+.+.+.+++.|++|++++.|.+|..+++ +.+ .+..++++ ..+|.||+++....
T Consensus 291 ~d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~-g~v-~v~~~~g~~~~~D~Viva~G~~P 350 (558)
T PLN02546 291 FDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSAD-GSL-SLKTNKGTVEGFSHVMFATGRKP 350 (558)
T ss_pred cCHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCC-CEE-EEEECCeEEEecCEEEEeecccc
Confidence 3333556667788889999999999999986543 334 35555444 45899999987654
No 218
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=84.39 E-value=4.7 Score=40.59 Aligned_cols=57 Identities=14% Similarity=0.203 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCC-CeEEEEEe----CCe--EEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEER-CCISDVVC----GKE--TYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~-~~v~~v~~----~g~--~~~ad~VI~a~p~~~ 220 (393)
+...+...+++.+++|..++.|+++..++++ |++.||.. +|+ .+.|+.||+|+....
T Consensus 128 ~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 191 (614)
T TIGR02061 128 YKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAV 191 (614)
T ss_pred HHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCccc
Confidence 4444555566667899999999999986421 47888765 343 578999999999864
No 219
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=84.35 E-value=2.4 Score=39.64 Aligned_cols=50 Identities=22% Similarity=0.268 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~ 220 (393)
+.+.+.+.+++.|+++++++.|.+|. + +. |.+ +|+++.+|.||++++...
T Consensus 193 ~~~~~~~~l~~~gV~v~~~~~v~~i~--~--~~---v~~~~g~~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 193 VRRLVLRLLARRGIEVHEGAPVTRGP--D--GA---LILADGRTLPADAILWATGARA 243 (364)
T ss_pred HHHHHHHHHHHCCCEEEeCCeeEEEc--C--Ce---EEeCCCCEEecCEEEEccCCCh
Confidence 45667777889999999999999985 2 22 344 688899999999998643
No 220
>PRK08244 hypothetical protein; Provisional
Probab=84.26 E-value=4.6 Score=39.57 Aligned_cols=59 Identities=22% Similarity=0.251 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe---CC-eEEecCEEEEecChhh-HHHHh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---GK-ETYSAGAVVLAVGIST-LQELI 225 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g-~~~~ad~VI~a~p~~~-~~~Ll 225 (393)
+-+.|.+.+++.|++|+.+++|++|..+++ ++. |++ +| ++++||.||.|...+. +.+.+
T Consensus 102 le~~L~~~~~~~gv~v~~~~~v~~i~~~~~--~v~-v~~~~~~g~~~i~a~~vVgADG~~S~vR~~l 165 (493)
T PRK08244 102 TEKVLEEHARSLGVEIFRGAEVLAVRQDGD--GVE-VVVRGPDGLRTLTSSYVVGADGAGSIVRKQA 165 (493)
T ss_pred HHHHHHHHHHHcCCeEEeCCEEEEEEEcCC--eEE-EEEEeCCccEEEEeCEEEECCCCChHHHHhc
Confidence 445566667778999999999999998774 354 333 35 4799999999998865 44444
No 221
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=84.04 E-value=0.32 Score=46.68 Aligned_cols=57 Identities=28% Similarity=0.337 Sum_probs=0.0
Q ss_pred HHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeC----CeEEecCEEEEecChhhHHHHhhc
Q 016211 169 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----KETYSAGAVVLAVGISTLQELIKN 227 (393)
Q Consensus 169 ~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~----g~~~~ad~VI~a~p~~~~~~Ll~~ 227 (393)
.+.+++.|++|++++.|.++..++ +++++|++. ..++.|+.||=|+.-..+..+...
T Consensus 97 ~~~l~e~gv~v~~~t~v~~v~~~~--~~i~~V~~~~~~g~~~i~A~~~IDaTG~g~l~~~aG~ 157 (428)
T PF12831_consen 97 DEMLAEAGVEVLLGTRVVDVIRDG--GRITGVIVETKSGRKEIRAKVFIDATGDGDLAALAGA 157 (428)
T ss_dssp ---------------------------------------------------------------
T ss_pred cccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccc
Confidence 333466799999999999999987 678888873 357999999999986666665444
No 222
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=83.45 E-value=3.8 Score=38.66 Aligned_cols=59 Identities=15% Similarity=0.140 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHc-CCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhh-HHHHh
Q 016211 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELI 225 (393)
Q Consensus 164 l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~-~~~Ll 225 (393)
+-..|.+.+++. |++|+.++.|++++.+++ .+. |++ +|++++||.||.|...+. +.+.+
T Consensus 112 l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~--~~~-v~~~~g~~~~~~lvIgADG~~S~vR~~~ 173 (384)
T PRK08849 112 IQLGLWQQFAQYPNLTLMCPEKLADLEFSAE--GNR-VTLESGAEIEAKWVIGADGANSQVRQLA 173 (384)
T ss_pred HHHHHHHHHHhCCCeEEECCCceeEEEEcCC--eEE-EEECCCCEEEeeEEEEecCCCchhHHhc
Confidence 334555555554 579999999999998774 354 555 678999999999999875 34444
No 223
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=83.40 E-value=3.7 Score=39.77 Aligned_cols=51 Identities=22% Similarity=0.224 Sum_probs=36.5
Q ss_pred HHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe--------------------CCeEEecCEEEEecChhh
Q 016211 168 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--------------------GKETYSAGAVVLAVGIST 220 (393)
Q Consensus 168 l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--------------------~g~~~~ad~VI~a~p~~~ 220 (393)
..+.+++.|++|++++.|.+|..++ +++.+|++ +++++.||.||+++....
T Consensus 317 ~~~~~~~~GV~i~~~~~v~~i~~~~--~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p 387 (457)
T PRK11749 317 EVEHAKEEGVEFEWLAAPVEILGDE--GRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTP 387 (457)
T ss_pred HHHHHHHCCCEEEecCCcEEEEecC--CceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCC
Confidence 3556778899999999999998655 33333332 124699999999987643
No 224
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=82.85 E-value=3.2 Score=40.01 Aligned_cols=56 Identities=13% Similarity=0.169 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhhHHHHhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELIK 226 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~~~~Ll~ 226 (393)
+.+.+.+.+++.|+++++++.|++|.. .. |.+ +|+++.+|.||++++...-..++.
T Consensus 191 ~~~~l~~~l~~~gI~i~~~~~v~~i~~----~~---v~~~~g~~~~~D~vl~a~G~~pn~~~l~ 247 (438)
T PRK13512 191 MNQPILDELDKREIPYRLNEEIDAING----NE---VTFKSGKVEHYDMIIEGVGTHPNSKFIE 247 (438)
T ss_pred HHHHHHHHHHhcCCEEEECCeEEEEeC----CE---EEECCCCEEEeCEEEECcCCCcChHHHH
Confidence 566778888889999999999999962 22 333 577899999999988654333333
No 225
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=82.80 E-value=3 Score=40.58 Aligned_cols=49 Identities=18% Similarity=0.201 Sum_probs=36.8
Q ss_pred HHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe------CC---------eEEecCEEEEecChh
Q 016211 169 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC------GK---------ETYSAGAVVLAVGIS 219 (393)
Q Consensus 169 ~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~------~g---------~~~~ad~VI~a~p~~ 219 (393)
.+.+++.|+++++++.+++|..++ +++.+|.+ +| +++.||.||+|+...
T Consensus 336 ~~~~~~~GV~i~~~~~~~~i~~~~--g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~ 399 (471)
T PRK12810 336 VSNAHEEGVEREFNVQTKEFEGEN--GKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFT 399 (471)
T ss_pred HHHHHHcCCeEEeccCceEEEccC--CEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcC
Confidence 445667899999999999997554 56766543 12 579999999999843
No 226
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=82.58 E-value=5.1 Score=38.77 Aligned_cols=53 Identities=19% Similarity=0.260 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~ 220 (393)
+.+.+.+ +.+.|.++++++.|++|..++ +.+. |.+ +|+++++|.||++++...
T Consensus 212 ~~~~l~~-~~~~gI~i~~~~~V~~i~~~~--~~v~-v~~~~g~~i~~D~vl~a~G~~p 265 (452)
T TIGR03452 212 ISDRFTE-IAKKKWDIRLGRNVTAVEQDG--DGVT-LTLDDGSTVTADVLLVATGRVP 265 (452)
T ss_pred HHHHHHH-HHhcCCEEEeCCEEEEEEEcC--CeEE-EEEcCCCEEEcCEEEEeeccCc
Confidence 4444443 334689999999999998765 3353 444 577899999999997544
No 227
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=82.52 E-value=2.8 Score=43.69 Aligned_cols=47 Identities=21% Similarity=0.246 Sum_probs=36.7
Q ss_pred HHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChh
Q 016211 169 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (393)
Q Consensus 169 ~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~ 219 (393)
.+.+++.|++++++++|++|..++ ..| +..+|+++.+|++|+|+...
T Consensus 61 ~~~~~~~gv~~~~g~~V~~Id~~~--k~V--~~~~g~~~~yD~LVlATGs~ 107 (785)
T TIGR02374 61 KDWYEKHGITLYTGETVIQIDTDQ--KQV--ITDAGRTLSYDKLILATGSY 107 (785)
T ss_pred HHHHHHCCCEEEcCCeEEEEECCC--CEE--EECCCcEeeCCEEEECCCCC
Confidence 344667899999999999998765 322 23367789999999999975
No 228
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=82.39 E-value=3.1 Score=39.49 Aligned_cols=45 Identities=13% Similarity=0.235 Sum_probs=35.2
Q ss_pred HHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChhh
Q 016211 172 MRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (393)
Q Consensus 172 l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~~ 220 (393)
+.+.|+++++++.|.+|..++ ..+ +..+|+++.+|++|+|+....
T Consensus 68 ~~~~~i~~~~g~~V~~id~~~--~~v--~~~~g~~~~yd~LViATGs~~ 112 (396)
T PRK09754 68 WQENNVHLHSGVTIKTLGRDT--REL--VLTNGESWHWDQLFIATGAAA 112 (396)
T ss_pred HHHCCCEEEcCCEEEEEECCC--CEE--EECCCCEEEcCEEEEccCCCC
Confidence 456789999999999998765 322 233678899999999998764
No 229
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=82.35 E-value=3.8 Score=39.09 Aligned_cols=57 Identities=16% Similarity=0.249 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhhH-HHHh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL-QELI 225 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~~-~~Ll 225 (393)
+.+.|.+.+. ...|+++++|++|..+++ ++. |+. +|++++||.||.|...+.. .+.+
T Consensus 107 l~~~L~~~~~--~~~v~~~~~v~~i~~~~~--~~~-v~~~~g~~~~ad~vVgADG~~S~vR~~l 165 (414)
T TIGR03219 107 FLDALLKHLP--EGIASFGKRATQIEEQAE--EVQ-VLFTDGTEYRCDLLIGADGIKSALRDYV 165 (414)
T ss_pred HHHHHHHhCC--CceEEcCCEEEEEEecCC--cEE-EEEcCCCEEEeeEEEECCCccHHHHHHh
Confidence 4455554442 357899999999998763 354 554 6788999999999988763 4443
No 230
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=82.21 E-value=5.7 Score=33.92 Aligned_cols=56 Identities=25% Similarity=0.274 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeC------------CeEEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG------------KETYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~------------g~~~~ad~VI~a~p~~~ 220 (393)
++..|+.+.-+.|.+|..++.|..|...++ .+|.||.+| --+++|+.||-||..+.
T Consensus 111 ~~skl~~~a~~aGaki~n~~~veDvi~r~~-~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda 178 (262)
T COG1635 111 FASKLAARALDAGAKIFNGVSVEDVIVRDD-PRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDA 178 (262)
T ss_pred HHHHHHHHHHhcCceeeecceEEEEEEecC-CceEEEEEecchhhhcccccCcceeeEEEEEeCCCCch
Confidence 455666666677999999999999999884 268888763 23678999999999876
No 231
>PRK02106 choline dehydrogenase; Validated
Probab=81.73 E-value=2.4 Score=42.28 Aligned_cols=51 Identities=12% Similarity=0.185 Sum_probs=39.4
Q ss_pred HcCCeEecCceeeeEEecCCCCeEEEEEe--CCe---EEecCEEEEecChhhHHHHhh
Q 016211 174 TRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE---TYSAGAVVLAVGISTLQELIK 226 (393)
Q Consensus 174 ~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~---~~~ad~VI~a~p~~~~~~Ll~ 226 (393)
+.+.+|++++.|++|..++ +++.+|+. .++ .+.++.||+|...-...+||-
T Consensus 213 ~~nl~i~~~a~V~rI~~~~--~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl 268 (560)
T PRK02106 213 RPNLTIVTHALTDRILFEG--KRAVGVEYERGGGRETARARREVILSAGAINSPQLLQ 268 (560)
T ss_pred CCCcEEEcCCEEEEEEEeC--CeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHh
Confidence 3458999999999999985 67888887 222 357899999998877666653
No 232
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=81.37 E-value=5.1 Score=38.13 Aligned_cols=59 Identities=17% Similarity=0.269 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHc-CCeEecCceeeeEEecCCCCeEEEEEe--CC--eEEecCEEEEecChhh-HHHHh
Q 016211 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC--GK--ETYSAGAVVLAVGIST-LQELI 225 (393)
Q Consensus 164 l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g--~~~~ad~VI~a~p~~~-~~~Ll 225 (393)
+.+.|.+.+++. |++|+++++|++|+.+++ .+. |++ ++ .+++||.||.|..... +.+.+
T Consensus 123 l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~--~~~-v~~~~~~~~~~i~adlvIgADG~~S~vR~~~ 187 (415)
T PRK07364 123 LLEALQEFLQSCPNITWLCPAEVVSVEYQQD--AAT-VTLEIEGKQQTLQSKLVVAADGARSPIRQAA 187 (415)
T ss_pred HHHHHHHHHhcCCCcEEEcCCeeEEEEecCC--eeE-EEEccCCcceEEeeeEEEEeCCCCchhHHHh
Confidence 556777777665 689999999999988763 343 444 23 4699999999998765 34443
No 233
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=81.19 E-value=5.8 Score=33.85 Aligned_cols=56 Identities=21% Similarity=0.209 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeC-------C-----eEEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-------K-----ETYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~-------g-----~~~~ad~VI~a~p~~~ 220 (393)
++..|..+..+.|++|...+.|..+...++ +||.||.+| | -+++|+.||-|+.++.
T Consensus 98 ~~s~L~s~a~~aGakifn~~~vEDvi~r~~-~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda 165 (230)
T PF01946_consen 98 FTSTLASKAIDAGAKIFNLTSVEDVIVRED-DRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDA 165 (230)
T ss_dssp HHHHHHHHHHTTTEEEEETEEEEEEEEECS-CEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSS
T ss_pred HHHHHHHHHhcCCCEEEeeeeeeeeEEEcC-CeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCch
Confidence 455666666668999999999999998875 689998773 2 3789999999997765
No 234
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=81.14 E-value=7.3 Score=38.69 Aligned_cols=60 Identities=18% Similarity=0.162 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHc-CCeEecCceeeeEEecCCCCeEEEEEe---CC--eEEecCEEEEecChhh-HHHHhh
Q 016211 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC---GK--ETYSAGAVVLAVGIST-LQELIK 226 (393)
Q Consensus 164 l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g--~~~~ad~VI~a~p~~~-~~~Ll~ 226 (393)
+-+.|.+.+++. |++|+.+++|++|+.+++ ++. |++ +| ++++||.||-|...+. +.+.+.
T Consensus 115 le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~--~v~-v~~~~~~G~~~~i~ad~vVgADG~~S~vR~~lg 181 (538)
T PRK06183 115 LEAVLRAGLARFPHVRVRFGHEVTALTQDDD--GVT-VTLTDADGQRETVRARYVVGCDGANSFVRRTLG 181 (538)
T ss_pred HHHHHHHHHHhCCCcEEEcCCEEEEEEEcCC--eEE-EEEEcCCCCEEEEEEEEEEecCCCchhHHHHcC
Confidence 444556666654 789999999999998874 354 443 35 4799999999999876 455553
No 235
>PRK12831 putative oxidoreductase; Provisional
Probab=80.96 E-value=5 Score=38.99 Aligned_cols=49 Identities=16% Similarity=0.260 Sum_probs=35.8
Q ss_pred HHHHcCCeEecCceeeeEEecCCCCeEEEEEe-------------------CC--eEEecCEEEEecChhh
Q 016211 171 SMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-------------------GK--ETYSAGAVVLAVGIST 220 (393)
Q Consensus 171 ~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-------------------~g--~~~~ad~VI~a~p~~~ 220 (393)
.+++.|++|++++.+.+|..+++ |++.+|.+ +| .++.||.||+|+....
T Consensus 327 ~a~~eGV~i~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p 396 (464)
T PRK12831 327 HAKEEGVIFDLLTNPVEILGDEN-GWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSP 396 (464)
T ss_pred HHHHcCCEEEecccceEEEecCC-CeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCC
Confidence 35667999999999999986543 56655543 12 2589999999988643
No 236
>PRK06996 hypothetical protein; Provisional
Probab=80.92 E-value=5.5 Score=37.76 Aligned_cols=59 Identities=14% Similarity=0.107 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CC---eEEecCEEEEecCh--hhHHHHh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK---ETYSAGAVVLAVGI--STLQELI 225 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g---~~~~ad~VI~a~p~--~~~~~Ll 225 (393)
+.+.|.+.+++.|+++++++.|++++.+++ .+. +.. +| ++++||.||-|... ....+.+
T Consensus 117 l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~--~v~-v~~~~~~g~~~i~a~lvIgADG~~~s~~r~~~ 181 (398)
T PRK06996 117 LVAALARAVRGTPVRWLTSTTAHAPAQDAD--GVT-LALGTPQGARTLRARIAVQAEGGLFHDQKADA 181 (398)
T ss_pred HHHHHHHHHHhCCCEEEcCCeeeeeeecCC--eEE-EEECCCCcceEEeeeEEEECCCCCchHHHHHc
Confidence 567788888888999999999999987764 354 444 32 58999999999774 3444544
No 237
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=80.75 E-value=6.2 Score=37.32 Aligned_cols=60 Identities=12% Similarity=0.003 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEe-cCCCCeEEEEEe--CCe--EEecCEEEEecChhh-HHHHhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIY-DEERCCISDVVC--GKE--TYSAGAVVLAVGIST-LQELIK 226 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~-~~~~~~v~~v~~--~g~--~~~ad~VI~a~p~~~-~~~Ll~ 226 (393)
+.+.|.+.+++.|++|+++++|++|+. +++ .+. |+. +|+ +++||.||-|-..+. +.+.++
T Consensus 105 l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~--~~~-V~~~~~G~~~~i~ad~vVgADG~~S~vR~~~~ 170 (392)
T PRK08243 105 VTRDLMAARLAAGGPIRFEASDVALHDFDSD--RPY-VTYEKDGEEHRLDCDFIAGCDGFHGVSRASIP 170 (392)
T ss_pred HHHHHHHHHHhCCCeEEEeeeEEEEEecCCC--ceE-EEEEcCCeEEEEEeCEEEECCCCCCchhhhcC
Confidence 556677776778999999999999986 432 232 443 563 689999999988875 455554
No 238
>PRK06126 hypothetical protein; Provisional
Probab=80.35 E-value=7.1 Score=38.83 Aligned_cols=60 Identities=23% Similarity=0.330 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHc-CCeEecCceeeeEEecCCCCeEEEEEe---CCe--EEecCEEEEecChhh-HHHHh
Q 016211 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC---GKE--TYSAGAVVLAVGIST-LQELI 225 (393)
Q Consensus 164 l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g~--~~~ad~VI~a~p~~~-~~~Ll 225 (393)
+.+.|.+.+++. |++|++++.|++|..+++ .+..+.. +|+ +++||.||.|..... +.+.+
T Consensus 128 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~--~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~l 194 (545)
T PRK06126 128 LEPILLEHAAAQPGVTLRYGHRLTDFEQDAD--GVTATVEDLDGGESLTIRADYLVGCDGARSAVRRSL 194 (545)
T ss_pred HHHHHHHHHHhCCCceEEeccEEEEEEECCC--eEEEEEEECCCCcEEEEEEEEEEecCCcchHHHHhc
Confidence 444556666554 689999999999998773 3542222 253 689999999999876 34444
No 239
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=80.32 E-value=6.6 Score=38.21 Aligned_cols=50 Identities=24% Similarity=0.298 Sum_probs=35.8
Q ss_pred HHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-------------------CC--eEEecCEEEEecChh
Q 016211 169 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-------------------GK--ETYSAGAVVLAVGIS 219 (393)
Q Consensus 169 ~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-------------------~g--~~~~ad~VI~a~p~~ 219 (393)
.+.+++.|+++++++.+++|..+++ |++.+|++ .| .++.||.||+|+...
T Consensus 327 ~~~~~~~GV~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~ 397 (467)
T TIGR01318 327 VANAREEGVEFLFNVQPVYIECDED-GRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQ 397 (467)
T ss_pred HHHHHhcCCEEEecCCcEEEEECCC-CeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCC
Confidence 3456678999999999999976543 45655533 11 368999999998743
No 240
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=80.13 E-value=5.3 Score=37.74 Aligned_cols=55 Identities=20% Similarity=0.219 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEE---EEEeCCeEEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCIS---DVVCGKETYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~---~v~~~g~~~~ad~VI~a~p~~~ 220 (393)
+.+.+.+.+++.|+++++++.|.+|...++ .+. .+..+++.+.+|.++++++...
T Consensus 180 ~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~d~~~~~~g~~p 237 (415)
T COG0446 180 VAEELAELLEKYGVELLLGTKVVGVEGKGN--TLVVERVVGIDGEEIKADLVIIGPGERP 237 (415)
T ss_pred HHHHHHHHHHHCCcEEEeCCceEEEEcccC--cceeeEEEEeCCcEEEeeEEEEeecccc
Confidence 677888889999999999999999998763 232 2344688899999999886654
No 241
>PRK07236 hypothetical protein; Provisional
Probab=80.03 E-value=4.8 Score=38.00 Aligned_cols=42 Identities=17% Similarity=0.096 Sum_probs=33.8
Q ss_pred CCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhh
Q 016211 176 GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (393)
Q Consensus 176 G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~ 220 (393)
+.+|++++.|++|+.++ +.+. |+. +|++++||.||.|-..+.
T Consensus 112 ~~~i~~~~~v~~i~~~~--~~v~-v~~~~g~~~~ad~vIgADG~~S 154 (386)
T PRK07236 112 AERYHLGETLVGFEQDG--DRVT-ARFADGRRETADLLVGADGGRS 154 (386)
T ss_pred CcEEEcCCEEEEEEecC--CeEE-EEECCCCEEEeCEEEECCCCCc
Confidence 35799999999999876 3465 444 688899999999987765
No 242
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=79.78 E-value=5.7 Score=39.20 Aligned_cols=56 Identities=13% Similarity=0.279 Sum_probs=39.6
Q ss_pred HHHHHHH-cCCeEecCceeeeEEecCCCCeEEEEEe-C---C--eEEecCEEEEecChhhHHHHh
Q 016211 168 WMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC-G---K--ETYSAGAVVLAVGISTLQELI 225 (393)
Q Consensus 168 l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~---g--~~~~ad~VI~a~p~~~~~~Ll 225 (393)
+.+.+++ .|++|++++.|++|..++ +++.+|.+ + | +++.||.||+++....-..++
T Consensus 393 l~~~l~~~~gV~i~~~~~v~~i~~~~--~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l 455 (515)
T TIGR03140 393 LQDKLKSLPNVDILTSAQTTEIVGDG--DKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWL 455 (515)
T ss_pred HHHHHhcCCCCEEEECCeeEEEEcCC--CEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHH
Confidence 4555665 589999999999998664 45655654 2 2 468999999998765433333
No 243
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=79.61 E-value=5.8 Score=36.30 Aligned_cols=61 Identities=15% Similarity=0.158 Sum_probs=46.8
Q ss_pred CCchhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChh
Q 016211 158 GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (393)
Q Consensus 158 gG~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~ 219 (393)
.++.+.+.+-+.+.++..|.+++.++.+++++...+ |....++..|....+|.++.|+.-.
T Consensus 226 R~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~-g~~~~i~~~~~i~~vd~llwAiGR~ 286 (478)
T KOG0405|consen 226 RGFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDD-GLELVITSHGTIEDVDTLLWAIGRK 286 (478)
T ss_pred cchhHHHHHHHHHHhhhcceeecccccceeeeecCC-CceEEEEeccccccccEEEEEecCC
Confidence 466666777778888889999999999999998876 3233344567666699999998754
No 244
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=78.73 E-value=7 Score=35.54 Aligned_cols=59 Identities=24% Similarity=0.308 Sum_probs=42.6
Q ss_pred CchhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChhhH
Q 016211 159 TLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 221 (393)
Q Consensus 159 G~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~~~ 221 (393)
-.+..+.+.+.+.++..|.++.. ..|.++...+ . ...|.++.++++|+.||+|+....-
T Consensus 58 ~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~--~-~F~v~t~~~~~~ak~vIiAtG~~~~ 116 (305)
T COG0492 58 ILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEG--G-PFKVKTDKGTYEAKAVIIATGAGAR 116 (305)
T ss_pred CchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecC--c-eEEEEECCCeEEEeEEEECcCCccc
Confidence 34444677888878777888776 7788887665 2 3346776445999999999998653
No 245
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=78.15 E-value=6.3 Score=37.99 Aligned_cols=48 Identities=13% Similarity=0.159 Sum_probs=36.1
Q ss_pred HHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe--CCeEEe--cCEEEEecChh
Q 016211 169 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKETYS--AGAVVLAVGIS 219 (393)
Q Consensus 169 ~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~~~~--ad~VI~a~p~~ 219 (393)
.+.+++.|+++++++.|.+|..++ +.+. +.. +|++++ +|++|+|+...
T Consensus 63 ~~~~~~~gv~~~~~~~V~~id~~~--~~v~-~~~~~~~~~~~~~yd~lviAtG~~ 114 (444)
T PRK09564 63 PEEFIKSGIDVKTEHEVVKVDAKN--KTIT-VKNLKTGSIFNDTYDKLMIATGAR 114 (444)
T ss_pred HHHHHHCCCeEEecCEEEEEECCC--CEEE-EEECCCCCEEEecCCEEEECCCCC
Confidence 345667799999999999998876 4443 433 255666 99999999975
No 246
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=77.55 E-value=7.8 Score=39.54 Aligned_cols=50 Identities=18% Similarity=0.225 Sum_probs=36.7
Q ss_pred HHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-------------------CC--eEEecCEEEEecCh
Q 016211 168 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-------------------GK--ETYSAGAVVLAVGI 218 (393)
Q Consensus 168 l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-------------------~g--~~~~ad~VI~a~p~ 218 (393)
..+.+++.|+++++++.+.+|..+++ |++.+|.+ .| .++.+|.||+|+..
T Consensus 512 e~~~~~~~Gv~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~ 582 (654)
T PRK12769 512 EVKNAREEGANFEFNVQPVALELNEQ-GHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGF 582 (654)
T ss_pred HHHHHHHcCCeEEeccCcEEEEECCC-CeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccC
Confidence 34557788999999999999986543 56666553 11 25899999999874
No 247
>PRK06753 hypothetical protein; Provisional
Probab=77.30 E-value=7.2 Score=36.48 Aligned_cols=48 Identities=15% Similarity=0.207 Sum_probs=36.6
Q ss_pred CCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhh-HHHHhh
Q 016211 176 GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELIK 226 (393)
Q Consensus 176 G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~-~~~Ll~ 226 (393)
+.+|+++++|++|+.++ +++. |++ +|+++++|.||-|...+. +.+.+.
T Consensus 110 ~~~i~~~~~v~~i~~~~--~~v~-v~~~~g~~~~~~~vigadG~~S~vR~~~~ 159 (373)
T PRK06753 110 EDAIFTGKEVTKIENET--DKVT-IHFADGESEAFDLCIGADGIHSKVRQSVN 159 (373)
T ss_pred CceEEECCEEEEEEecC--CcEE-EEECCCCEEecCEEEECCCcchHHHHHhC
Confidence 45899999999999776 4464 555 688899999999998765 455443
No 248
>PRK06475 salicylate hydroxylase; Provisional
Probab=75.64 E-value=11 Score=35.62 Aligned_cols=60 Identities=22% Similarity=0.243 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHc-CCeEecCceeeeEEecCCCCeEEEEEe---C-CeEEecCEEEEecChhh-HHHHhh
Q 016211 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC---G-KETYSAGAVVLAVGIST-LQELIK 226 (393)
Q Consensus 164 l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~---~-g~~~~ad~VI~a~p~~~-~~~Ll~ 226 (393)
+.+.|.+.+.+. |++|+++++|+++..+++ ++. |+. + +++++||.||-|-..+. +.+.++
T Consensus 109 l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~--~v~-v~~~~~~~~~~~~adlvIgADG~~S~vR~~~~ 174 (400)
T PRK06475 109 LQSALLDACRNNPGIEIKLGAEMTSQRQTGN--SIT-ATIIRTNSVETVSAAYLIACDGVWSMLRAKAG 174 (400)
T ss_pred HHHHHHHHHHhcCCcEEEECCEEEEEecCCC--ceE-EEEEeCCCCcEEecCEEEECCCccHhHHhhcC
Confidence 556677766553 689999999999988763 354 332 3 35799999999999876 455553
No 249
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=75.47 E-value=9.9 Score=34.09 Aligned_cols=52 Identities=23% Similarity=0.344 Sum_probs=37.9
Q ss_pred HHHHHHHHHc-CCeEecCceeeeEEecCCCCeEEEEEe----CC--eEEecCEEEEecChhh
Q 016211 166 EPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIST 220 (393)
Q Consensus 166 ~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g--~~~~ad~VI~a~p~~~ 220 (393)
..+.+.+++. |+++++++.|.+|..++ ++..+.. +| +++.+|.||++++...
T Consensus 180 ~~~~~~l~~~~gv~~~~~~~v~~i~~~~---~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~ 238 (300)
T TIGR01292 180 KILLDRLRKNPNIEFLWNSTVKEIVGDN---KVEGVKIKNTVTGEEEELKVDGVFIAIGHEP 238 (300)
T ss_pred HHHHHHHHhCCCeEEEeccEEEEEEccC---cEEEEEEEecCCCceEEEEccEEEEeeCCCC
Confidence 4456667777 89999999999998643 3444443 13 5799999999998654
No 250
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=75.27 E-value=7.3 Score=35.42 Aligned_cols=63 Identities=14% Similarity=0.189 Sum_probs=52.2
Q ss_pred HhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CC--eEEecCEEEEecChhhHHHHhhc
Q 016211 163 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK--ETYSAGAVVLAVGISTLQELIKN 227 (393)
Q Consensus 163 ~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g--~~~~ad~VI~a~p~~~~~~Ll~~ 227 (393)
++-+.|.+++++.|+-+..+-+|.+....+ ++|+.|-+ +. ..++||.+|+|+..-.-+.|..+
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~--~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae 324 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATCKG--GRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAE 324 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeeeeC--CeEEEEEecccccCCCChhHeeeeccccccccchhh
Confidence 477899999999999999999999999988 67887776 33 45799999999988776666554
No 251
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=75.13 E-value=5.3 Score=33.44 Aligned_cols=50 Identities=16% Similarity=0.213 Sum_probs=35.5
Q ss_pred HHHHHHHHcCCeEecCceeeeEEecCCCCeE----EEE---Ee-CCeEEecCEEEEecCh
Q 016211 167 PWMDSMRTRGCEFLDGRRVTDFIYDEERCCI----SDV---VC-GKETYSAGAVVLAVGI 218 (393)
Q Consensus 167 ~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v----~~v---~~-~g~~~~ad~VI~a~p~ 218 (393)
.+.+.+...+.++++++.|.+|.... +++ ..+ .. ++.++.+|+||+|+..
T Consensus 63 ~~~~~~~~~~v~~~~~~~v~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~ 120 (201)
T PF07992_consen 63 KLVDQLKNRGVEIRLNAKVVSIDPES--KRVVCPAVTIQVVETGDGREIKYDYLVIATGS 120 (201)
T ss_dssp HHHHHHHHHTHEEEHHHTEEEEEEST--TEEEETCEEEEEEETTTEEEEEEEEEEEESTE
T ss_pred ccccccccceEEEeeccccccccccc--cccccCcccceeeccCCceEecCCeeeecCcc
Confidence 34445556788999999999998876 421 112 22 3578999999999984
No 252
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=75.07 E-value=7.9 Score=37.09 Aligned_cols=45 Identities=22% Similarity=0.347 Sum_probs=34.1
Q ss_pred HHHcCCeEecCceeeeEEecCCCCeEEEEEeC--CeEEe--cCEEEEecChh
Q 016211 172 MRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KETYS--AGAVVLAVGIS 219 (393)
Q Consensus 172 l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~--g~~~~--ad~VI~a~p~~ 219 (393)
+++.|+++++++.|++|..++ +.+. +..+ ++++. +|+||+|+...
T Consensus 54 ~~~~gv~~~~~~~V~~id~~~--~~v~-~~~~~~~~~~~~~yd~lIiATG~~ 102 (427)
T TIGR03385 54 IKKRGIDVKTNHEVIEVNDER--QTVV-VRNNKTNETYEESYDYLILSPGAS 102 (427)
T ss_pred HHhcCCeEEecCEEEEEECCC--CEEE-EEECCCCCEEecCCCEEEECCCCC
Confidence 366799999999999998765 4443 3332 45677 99999999973
No 253
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=74.80 E-value=6.6 Score=36.42 Aligned_cols=39 Identities=28% Similarity=0.311 Sum_probs=27.0
Q ss_pred CeEecCceeeeEEecCCCCeEEEEEe-C---C--eEEecCEEEEecC
Q 016211 177 CEFLDGRRVTDFIYDEERCCISDVVC-G---K--ETYSAGAVVLAVG 217 (393)
Q Consensus 177 ~~i~l~~~V~~I~~~~~~~~v~~v~~-~---g--~~~~ad~VI~a~p 217 (393)
.+|+.++.|+++..+++ |++. +.+ + | .++.+|+||+||.
T Consensus 294 ~~l~~~~~v~~~~~~~~-~~~~-l~~~~~~~~~~~~~~~D~VilATG 338 (341)
T PF13434_consen 294 LRLLPNTEVTSAEQDGD-GGVR-LTLRHRQTGEEETLEVDAVILATG 338 (341)
T ss_dssp SEEETTEEEEEEEEES--SSEE-EEEEETTT--EEEEEESEEEE---
T ss_pred eEEeCCCEEEEEEECCC-CEEE-EEEEECCCCCeEEEecCEEEEcCC
Confidence 68999999999999875 3454 444 1 2 5689999999986
No 254
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=74.50 E-value=12 Score=36.06 Aligned_cols=62 Identities=8% Similarity=0.163 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHcC---CeEecCceeeeEEec-----CCCCeEEEEEe-CCeEEecCEEEEecChhh-HHHHhh
Q 016211 164 IFEPWMDSMRTRG---CEFLDGRRVTDFIYD-----EERCCISDVVC-GKETYSAGAVVLAVGIST-LQELIK 226 (393)
Q Consensus 164 l~~~l~~~l~~~G---~~i~l~~~V~~I~~~-----~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~-~~~Ll~ 226 (393)
+.+.|.+.+++.+ ++|+++++|.+|+.+ +++..+. |++ +|++++||.||-|-..+. +.+.+.
T Consensus 119 l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~-v~~~~g~~i~a~llVgADG~~S~vR~~~g 190 (437)
T TIGR01989 119 IQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVH-ITLSDGQVLYTKLLIGADGSNSNVRKAAN 190 (437)
T ss_pred HHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceE-EEEcCCCEEEeeEEEEecCCCChhHHHcC
Confidence 5566777777765 799999999999853 1112343 555 688999999999998875 455443
No 255
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=74.19 E-value=4.9 Score=37.53 Aligned_cols=48 Identities=23% Similarity=0.221 Sum_probs=35.5
Q ss_pred HHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhh
Q 016211 167 PWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (393)
Q Consensus 167 ~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~ 220 (393)
.+.+.++..|++++.+ .|++|..++ .. |.+ +|+++.+|++|+|+....
T Consensus 59 ~~~~~~~~~gv~~~~~-~v~~id~~~--~~---V~~~~g~~~~yD~LviAtG~~~ 107 (364)
T TIGR03169 59 DLRRLARQAGARFVIA-EATGIDPDR--RK---VLLANRPPLSYDVLSLDVGSTT 107 (364)
T ss_pred cHHHHHHhcCCEEEEE-EEEEEeccc--CE---EEECCCCcccccEEEEccCCCC
Confidence 3445556678998775 799998776 32 444 577899999999998754
No 256
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=73.97 E-value=14 Score=36.62 Aligned_cols=43 Identities=23% Similarity=0.098 Sum_probs=30.3
Q ss_pred eEecCceeeeEEecCCC---CeEEEEEe--CC--eEEecCEEEEecChhhH
Q 016211 178 EFLDGRRVTDFIYDEER---CCISDVVC--GK--ETYSAGAVVLAVGISTL 221 (393)
Q Consensus 178 ~i~l~~~V~~I~~~~~~---~~v~~v~~--~g--~~~~ad~VI~a~p~~~~ 221 (393)
.|++||.|.+|...+|. +++ .|++ +| ++..+|+||+|+.....
T Consensus 102 ~I~fnt~V~~v~~~~d~~~~~~W-~V~~~~~g~~~~~~fD~VvvatG~~~~ 151 (531)
T PF00743_consen 102 HIRFNTEVVSVERDPDFSATGKW-EVTTENDGKEETEEFDAVVVATGHFSK 151 (531)
T ss_dssp GEETSEEEEEEEEETTTT-ETEE-EEEETTTTEEEEEEECEEEEEE-SSSC
T ss_pred eEEEccEEeEeeeccccCCCceE-EEEeecCCeEEEEEeCeEEEcCCCcCC
Confidence 69999999999986531 344 4666 34 34568999999987653
No 257
>PRK05868 hypothetical protein; Validated
Probab=73.89 E-value=10 Score=35.54 Aligned_cols=49 Identities=16% Similarity=0.202 Sum_probs=38.0
Q ss_pred cCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhh-HHHHhh
Q 016211 175 RGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST-LQELIK 226 (393)
Q Consensus 175 ~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~-~~~Ll~ 226 (393)
.|.+|++++.|++|+.++ +.+. |+. +|++++||.||-|-..+. +.+.+.
T Consensus 117 ~~v~i~~~~~v~~i~~~~--~~v~-v~~~dg~~~~adlvIgADG~~S~vR~~~~ 167 (372)
T PRK05868 117 PSVEYLFDDSISTLQDDG--DSVR-VTFERAAAREFDLVIGADGLHSNVRRLVF 167 (372)
T ss_pred CCcEEEeCCEEEEEEecC--CeEE-EEECCCCeEEeCEEEECCCCCchHHHHhc
Confidence 478999999999998765 3454 555 678899999999998875 455553
No 258
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=73.45 E-value=13 Score=36.91 Aligned_cols=60 Identities=13% Similarity=0.190 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHc-CCeEecCceeeeEEecCCCCeEEEEEe---CCe-EEecCEEEEecChhh-HHHHhh
Q 016211 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC---GKE-TYSAGAVVLAVGIST-LQELIK 226 (393)
Q Consensus 164 l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g~-~~~ad~VI~a~p~~~-~~~Ll~ 226 (393)
+-+.|.+.+++. |++|+++++|++++.+++ .+. +.+ +|+ +++||.||.|...+. +.+.+.
T Consensus 127 le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~--~v~-v~~~~~~g~~~i~ad~vVgADG~~S~vR~~lg 192 (547)
T PRK08132 127 VEGYLVERAQALPNIDLRWKNKVTGLEQHDD--GVT-LTVETPDGPYTLEADWVIACDGARSPLREMLG 192 (547)
T ss_pred HHHHHHHHHHhCCCcEEEeCCEEEEEEEcCC--EEE-EEEECCCCcEEEEeCEEEECCCCCcHHHHHcC
Confidence 444566666665 579999999999998764 343 332 343 689999999998765 455554
No 259
>PRK11445 putative oxidoreductase; Provisional
Probab=73.27 E-value=13 Score=34.54 Aligned_cols=50 Identities=12% Similarity=0.107 Sum_probs=36.7
Q ss_pred HHcCCeEecCceeeeEEecCCCCeEEEEEe--CCe--EEecCEEEEecChhh-HHHHh
Q 016211 173 RTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGIST-LQELI 225 (393)
Q Consensus 173 ~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~g~--~~~ad~VI~a~p~~~-~~~Ll 225 (393)
.+.|++|+.++.|++|..+++ .+. |+. +|+ +++||.||.|..... +.+.+
T Consensus 109 ~~~gv~v~~~~~v~~i~~~~~--~~~-v~~~~~g~~~~i~a~~vV~AdG~~S~vr~~l 163 (351)
T PRK11445 109 IPASVEVYHNSLCRKIWREDD--GYH-VIFRADGWEQHITARYLVGADGANSMVRRHL 163 (351)
T ss_pred HhcCCEEEcCCEEEEEEEcCC--EEE-EEEecCCcEEEEEeCEEEECCCCCcHHhHHh
Confidence 346899999999999998763 343 443 453 689999999999875 34443
No 260
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=73.07 E-value=7.5 Score=36.03 Aligned_cols=44 Identities=32% Similarity=0.290 Sum_probs=28.9
Q ss_pred CCeEecCceeeeEEecCCCC-eEEEEEe-----CCeEEecCEEEEecChh
Q 016211 176 GCEFLDGRRVTDFIYDEERC-CISDVVC-----GKETYSAGAVVLAVGIS 219 (393)
Q Consensus 176 G~~i~l~~~V~~I~~~~~~~-~v~~v~~-----~g~~~~ad~VI~a~p~~ 219 (393)
+.+|+++++|++|...++++ ....|.+ +++++.|++||+++...
T Consensus 109 ~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~ 158 (341)
T PF13434_consen 109 DNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQ 158 (341)
T ss_dssp TTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----E
T ss_pred CCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCC
Confidence 34599999999999876421 2345666 35789999999998843
No 261
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=72.49 E-value=15 Score=35.72 Aligned_cols=53 Identities=25% Similarity=0.278 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-C--C--eEEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G--K--ETYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~--g--~~~~ad~VI~a~p~~~ 220 (393)
+.+.+.+.+++. .+|++++.|++|+.++ +.+. +.+ + | ++++||.||+++....
T Consensus 217 ~~~~~~~~l~~~-v~i~~~~~v~~i~~~~--~~~~-v~~~~~~~~~~~i~~D~vi~a~G~~p 274 (471)
T PRK06467 217 IVKVFTKRIKKQ-FNIMLETKVTAVEAKE--DGIY-VTMEGKKAPAEPQRYDAVLVAVGRVP 274 (471)
T ss_pred HHHHHHHHHhhc-eEEEcCCEEEEEEEcC--CEEE-EEEEeCCCcceEEEeCEEEEeecccc
Confidence 556677778777 9999999999998765 3343 443 2 2 4699999999988753
No 262
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=72.20 E-value=7.9 Score=40.70 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=35.4
Q ss_pred HHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChh
Q 016211 170 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIS 219 (393)
Q Consensus 170 ~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~ 219 (393)
+.+++.|+++++++.|.+|..+. . + |.+ +|+++.+|.+|+|+...
T Consensus 67 ~~~~~~gI~~~~g~~V~~Id~~~--~-~--V~~~~G~~i~yD~LVIATGs~ 112 (847)
T PRK14989 67 GFYEKHGIKVLVGERAITINRQE--K-V--IHSSAGRTVFYDKLIMATGSY 112 (847)
T ss_pred HHHHhCCCEEEcCCEEEEEeCCC--c-E--EEECCCcEEECCEEEECCCCC
Confidence 34566799999999999998764 2 2 344 57789999999999975
No 263
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=70.82 E-value=16 Score=35.23 Aligned_cols=56 Identities=25% Similarity=0.172 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHcCC--eEecCceeeeEEecCCCCeEEEEEeC-CeE--EecCEEEEecChhh
Q 016211 164 IFEPWMDSMRTRGC--EFLDGRRVTDFIYDEERCCISDVVCG-KET--YSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~G~--~i~l~~~V~~I~~~~~~~~v~~v~~~-g~~--~~ad~VI~a~p~~~ 220 (393)
+-+-+...++..+. +|+.+++|+.+..++++ ..+.|+++ |.+ +.||.||+|+....
T Consensus 84 ~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~-~~w~V~~~~~~~~~~~a~~vV~ATG~~~ 144 (443)
T COG2072 84 IKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDT-KRWTVTTSDGGTGELTADFVVVATGHLS 144 (443)
T ss_pred HHHHHHHHHHHcCceeEEEcccceEEEEecCCC-CeEEEEEcCCCeeeEecCEEEEeecCCC
Confidence 33556666666664 79999999999888763 34557773 433 56999999999844
No 264
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=70.75 E-value=6.2 Score=38.45 Aligned_cols=57 Identities=23% Similarity=0.311 Sum_probs=37.1
Q ss_pred HHHHHHHHHc-CCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhhHHHH
Q 016211 166 EPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQEL 224 (393)
Q Consensus 166 ~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~~~~L 224 (393)
+.+.+.++.. +..|+ ...|..|..+++ .+|++|.+ +|..+.|++||+|+..-.-.++
T Consensus 104 ~~mk~~le~~~NL~l~-q~~v~dli~e~~-~~v~GV~t~~G~~~~a~aVVlTTGTFL~G~I 162 (621)
T COG0445 104 RAMKNELENQPNLHLL-QGEVEDLIVEEG-QRVVGVVTADGPEFHAKAVVLTTGTFLRGKI 162 (621)
T ss_pred HHHHHHHhcCCCceeh-HhhhHHHhhcCC-CeEEEEEeCCCCeeecCEEEEeecccccceE
Confidence 3444445443 34444 445666777552 35888888 5889999999999987654443
No 265
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=70.37 E-value=13 Score=37.83 Aligned_cols=47 Identities=21% Similarity=0.256 Sum_probs=34.5
Q ss_pred HHHcCCeEecCceeeeEEecCCCCeEEEEEe----------C---------C--eEEecCEEEEecChh
Q 016211 172 MRTRGCEFLDGRRVTDFIYDEERCCISDVVC----------G---------K--ETYSAGAVVLAVGIS 219 (393)
Q Consensus 172 l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----------~---------g--~~~~ad~VI~a~p~~ 219 (393)
+++.|+++++++.+++|..+++ |++.+|.+ + | .++.||.||+|+...
T Consensus 499 a~~eGv~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~ 566 (639)
T PRK12809 499 AREEGVEFQFNVQPQYIACDED-GRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQ 566 (639)
T ss_pred HHHcCCeEEeccCCEEEEECCC-CeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCC
Confidence 4567999999999999986543 56765532 1 1 268999999998743
No 266
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=70.21 E-value=16 Score=35.29 Aligned_cols=64 Identities=23% Similarity=0.375 Sum_probs=48.4
Q ss_pred EEecCCchhHhHHHHHHHHHH-cCCeEecCceeeeEEecCCCCeEEEEEe--C-C--eEEecCEEEEecCh
Q 016211 154 VWCRGTLREKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC--G-K--ETYSAGAVVLAVGI 218 (393)
Q Consensus 154 ~~~~gG~~~~l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~-g--~~~~ad~VI~a~p~ 218 (393)
....|..+.-+.+.|.+++++ .+.+|.-++.+.+|..+++ ..+.||.+ + + .++.+++||+|+.-
T Consensus 125 lH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~-~~~~Gv~~~~~~~~~~~~~a~~vVLATGG 194 (518)
T COG0029 125 LHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDG-IGVAGVLVLNRNGELGTFRAKAVVLATGG 194 (518)
T ss_pred EEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCC-ceEeEEEEecCCCeEEEEecCeEEEecCC
Confidence 344565566678888888876 4789999999999999873 24657777 2 3 56889999999875
No 267
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=70.00 E-value=5.2 Score=40.31 Aligned_cols=52 Identities=19% Similarity=0.224 Sum_probs=42.4
Q ss_pred HHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhh
Q 016211 166 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (393)
Q Consensus 166 ~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~ 220 (393)
+.|.+.+++.|.++++++-+++|..+ +++.+|+. +|..+.||-||.|+...-
T Consensus 191 ~lL~~~le~~Gi~~~l~~~t~ei~g~---~~~~~vr~~DG~~i~ad~VV~a~GIrP 243 (793)
T COG1251 191 RLLRRKLEDLGIKVLLEKNTEEIVGE---DKVEGVRFADGTEIPADLVVMAVGIRP 243 (793)
T ss_pred HHHHHHHHhhcceeecccchhhhhcC---cceeeEeecCCCcccceeEEEeccccc
Confidence 34667788999999999999999874 35777887 688899999999987643
No 268
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=69.45 E-value=14 Score=38.47 Aligned_cols=49 Identities=27% Similarity=0.424 Sum_probs=35.9
Q ss_pred HHHHHcCCeEecCceeeeEEecCCCCeEEEEEe----------C---------C--eEEecCEEEEecChh
Q 016211 170 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----------G---------K--ETYSAGAVVLAVGIS 219 (393)
Q Consensus 170 ~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----------~---------g--~~~~ad~VI~a~p~~ 219 (393)
+.+++.|+++++++.+.+|..+++ |++.+|.+ + | .++.||.||+|+.-.
T Consensus 616 ~~~~~~GV~i~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~ 685 (752)
T PRK12778 616 KHAKEEGIEFLTLHNPIEYLADEK-GWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVS 685 (752)
T ss_pred HHHHHcCCEEEecCcceEEEECCC-CEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCC
Confidence 346778999999999999986543 56665543 1 1 258999999998754
No 269
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=69.19 E-value=18 Score=38.99 Aligned_cols=59 Identities=20% Similarity=0.191 Sum_probs=42.3
Q ss_pred HHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-----CCeEEecCEEEEecChhhHHHHhh
Q 016211 165 FEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-----GKETYSAGAVVLAVGISTLQELIK 226 (393)
Q Consensus 165 ~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-----~g~~~~ad~VI~a~p~~~~~~Ll~ 226 (393)
...+.+.+++.|++|++++.|.+|..++ ++.+|+. +++++.||.|++++....-..|+.
T Consensus 354 ~~~l~~~L~~~GV~i~~~~~v~~i~g~~---~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~ 417 (985)
T TIGR01372 354 SPEARAEARELGIEVLTGHVVAATEGGK---RVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFS 417 (985)
T ss_pred hHHHHHHHHHcCCEEEcCCeEEEEecCC---cEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHH
Confidence 3456677888899999999999997543 3444443 346799999999987655444443
No 270
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=68.69 E-value=17 Score=35.28 Aligned_cols=53 Identities=19% Similarity=0.172 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-C--CeEEecCEEEEecChh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G--KETYSAGAVVLAVGIS 219 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~--g~~~~ad~VI~a~p~~ 219 (393)
+.+.+.+.+++. ++|+++++|.+|..+++ .++. ++. + ++++.+|.||+++...
T Consensus 212 ~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~-~~v~-~~~~~~~~~~i~~D~vi~a~G~~ 267 (460)
T PRK06292 212 VSKQAQKILSKE-FKIKLGAKVTSVEKSGD-EKVE-ELEKGGKTETIEADYVLVATGRR 267 (460)
T ss_pred HHHHHHHHHhhc-cEEEcCCEEEEEEEcCC-ceEE-EEEcCCceEEEEeCEEEEccCCc
Confidence 556667778888 99999999999986542 1343 322 3 3579999999997754
No 271
>PRK13984 putative oxidoreductase; Provisional
Probab=68.52 E-value=15 Score=37.18 Aligned_cols=46 Identities=17% Similarity=0.184 Sum_probs=33.6
Q ss_pred HHcCCeEecCceeeeEEecCCCCeEEEEEeC--------------------CeEEecCEEEEecChhh
Q 016211 173 RTRGCEFLDGRRVTDFIYDEERCCISDVVCG--------------------KETYSAGAVVLAVGIST 220 (393)
Q Consensus 173 ~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~--------------------g~~~~ad~VI~a~p~~~ 220 (393)
.+.|++|++++.+.+|..++ +++.+|.+. ++++++|.||+|+....
T Consensus 473 ~~~GV~i~~~~~~~~i~~~~--g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p 538 (604)
T PRK13984 473 LEEGVVIYPGWGPMEVVIEN--DKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAP 538 (604)
T ss_pred HHcCCEEEeCCCCEEEEccC--CEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCC
Confidence 45799999999999987654 556655431 13689999999987654
No 272
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=68.23 E-value=18 Score=38.44 Aligned_cols=55 Identities=18% Similarity=0.145 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHc----CCeEecCceeeeEEecCCCCeEEEEEe----CCe--EEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRTR----GCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~----G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VI~a~p~~~ 220 (393)
+.+.|.+.+.+. ++++..++.+.++..++ |++.||.. +|+ .+.|+.||+|+....
T Consensus 141 i~~~L~~~l~~~~~~~~i~~~~~~~~~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 205 (897)
T PRK13800 141 VKKALYRVLRQRSMRERIRIENRLMPVRVLTEG--GRAVGAAALNTRTGEFVTVGAKAVILATGPCG 205 (897)
T ss_pred HHHHHHHHHHHhhhcCCcEEEeceeeEEEEeeC--CEEEEEEEEecCCCcEEEEECCEEEECCCccc
Confidence 556677766554 35666666667887765 67888764 354 478999999998753
No 273
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=67.24 E-value=14 Score=35.56 Aligned_cols=45 Identities=16% Similarity=0.137 Sum_probs=33.1
Q ss_pred HHcCCeEecCceeeeEEecCCCCeEEEEEeC--Ce--EEecCEEEEecChhh
Q 016211 173 RTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAGAVVLAVGIST 220 (393)
Q Consensus 173 ~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~--g~--~~~ad~VI~a~p~~~ 220 (393)
+..|.+++++++|.+|..++ +.+. +..+ ++ ++.+|++|+|+....
T Consensus 69 ~~~~i~v~~~~~V~~Id~~~--~~v~-~~~~~~~~~~~~~yd~lviAtGs~~ 117 (438)
T PRK13512 69 DRKQITVKTYHEVIAINDER--QTVT-VLNRKTNEQFEESYDKLILSPGASA 117 (438)
T ss_pred HhCCCEEEeCCEEEEEECCC--CEEE-EEECCCCcEEeeecCEEEECCCCCC
Confidence 44689999999999998876 4443 3332 22 368999999998754
No 274
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=67.09 E-value=19 Score=35.98 Aligned_cols=52 Identities=25% Similarity=0.388 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~ 219 (393)
+.+.+.+.+++.|++++ ++.|++|..++ . ...|.++++++.+++||+|+...
T Consensus 62 l~~~l~~~~~~~gv~~~-~~~V~~i~~~~--~-~~~V~~~~g~~~a~~lVlATGa~ 113 (555)
T TIGR03143 62 LMQEMRQQAQDFGVKFL-QAEVLDVDFDG--D-IKTIKTARGDYKTLAVLIATGAS 113 (555)
T ss_pred HHHHHHHHHHHcCCEEe-ccEEEEEEecC--C-EEEEEecCCEEEEeEEEECCCCc
Confidence 55667777777888875 78899998765 2 33456655568999999999985
No 275
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=66.89 E-value=18 Score=33.57 Aligned_cols=51 Identities=24% Similarity=0.251 Sum_probs=36.2
Q ss_pred HHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-------------------C--CeEEecCEEEEecChhh
Q 016211 167 PWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-------------------G--KETYSAGAVVLAVGIST 220 (393)
Q Consensus 167 ~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-------------------~--g~~~~ad~VI~a~p~~~ 220 (393)
.+.+.++++|++|++++.|.+|+.++ ++..|.. + ++++.+|.||+++....
T Consensus 215 ~~~~~l~~~gi~i~~~~~v~~i~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p 286 (352)
T PRK12770 215 YEIERLIARGVEFLELVTPVRIIGEG---RVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIP 286 (352)
T ss_pred HHHHHHHHcCCEEeeccCceeeecCC---cEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCC
Confidence 44566888999999999999987543 2333321 2 35789999999887643
No 276
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=66.61 E-value=22 Score=33.47 Aligned_cols=58 Identities=14% Similarity=0.173 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-C------C--eEEecCEEEEecChhh-HHHHh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G------K--ETYSAGAVVLAVGIST-LQELI 225 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~------g--~~~~ad~VI~a~p~~~-~~~Ll 225 (393)
+-+.|.+.+.+.|++|+.+ .|++|..++ +.+. |++ + | .+++||.||.|...+. +.+.+
T Consensus 94 fd~~L~~~a~~~G~~v~~~-~v~~v~~~~--~~~~-v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v~r~l 161 (388)
T TIGR02023 94 FDSYLRERAQKAGAELIHG-LFLKLERDR--DGVT-LTYRTPKKGAGGEKGSVEADVVIGADGANSPVAKEL 161 (388)
T ss_pred HHHHHHHHHHhCCCEEEee-EEEEEEEcC--CeEE-EEEEeccccCCCcceEEEeCEEEECCCCCcHHHHHc
Confidence 4456677777789999755 699998776 3343 433 2 2 4689999999999765 34433
No 277
>PRK07538 hypothetical protein; Provisional
Probab=66.31 E-value=23 Score=33.79 Aligned_cols=61 Identities=20% Similarity=0.263 Sum_probs=40.0
Q ss_pred hHHHHHHHHHH-cCC-eEecCceeeeEEecCCCCeEEEEEe--CC--eEEecCEEEEecChhh-HHHHh
Q 016211 164 IFEPWMDSMRT-RGC-EFLDGRRVTDFIYDEERCCISDVVC--GK--ETYSAGAVVLAVGIST-LQELI 225 (393)
Q Consensus 164 l~~~l~~~l~~-~G~-~i~l~~~V~~I~~~~~~~~v~~v~~--~g--~~~~ad~VI~a~p~~~-~~~Ll 225 (393)
+.+.|.+.+.+ .|. +|+++++|+++..+++ +.+..+.. +| ++++||.||-|-..+. +.+.+
T Consensus 104 l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~-~~~~~~~~~~~g~~~~~~adlvIgADG~~S~vR~~l 171 (413)
T PRK07538 104 LQMLLLDAVRERLGPDAVRTGHRVVGFEQDAD-VTVVFLGDRAGGDLVSVRGDVLIGADGIHSAVRAQL 171 (413)
T ss_pred HHHHHHHHHHhhcCCcEEEcCCEEEEEEecCC-ceEEEEeccCCCccceEEeeEEEECCCCCHHHhhhh
Confidence 44556666544 464 6999999999988764 32222221 12 4799999999998876 34444
No 278
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=65.86 E-value=16 Score=36.02 Aligned_cols=52 Identities=12% Similarity=0.211 Sum_probs=38.0
Q ss_pred HHHHHHHH-cCCeEecCceeeeEEecCCCCeEEEEEe----CC--eEEecCEEEEecChhh
Q 016211 167 PWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIST 220 (393)
Q Consensus 167 ~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g--~~~~ad~VI~a~p~~~ 220 (393)
.+.+.+.+ .|++|++++.|.+|..++ +++.+|.+ +| +++.||.|++++....
T Consensus 391 ~l~~~l~~~~gI~i~~~~~v~~i~~~~--g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p 449 (517)
T PRK15317 391 VLQDKLRSLPNVTIITNAQTTEVTGDG--DKVTGLTYKDRTTGEEHHLELEGVFVQIGLVP 449 (517)
T ss_pred HHHHHHhcCCCcEEEECcEEEEEEcCC--CcEEEEEEEECCCCcEEEEEcCEEEEeECCcc
Confidence 34555655 489999999999998765 45665554 23 3589999999987754
No 279
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=65.69 E-value=29 Score=35.35 Aligned_cols=56 Identities=4% Similarity=-0.018 Sum_probs=37.5
Q ss_pred hHHHHHHHH-HHcCCeEecCceeeeEEecCCCCeEEEEEe-C---C------------eEEecCEEEEecChhh
Q 016211 164 IFEPWMDSM-RTRGCEFLDGRRVTDFIYDEERCCISDVVC-G---K------------ETYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l-~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~---g------------~~~~ad~VI~a~p~~~ 220 (393)
+.+.+.+.+ ++.|++|++++.|.+|..++++..+. +.+ + + +++++|.||+|+....
T Consensus 355 is~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~-v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~P 427 (659)
T PTZ00153 355 VAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVI-IGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKP 427 (659)
T ss_pred HHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEE-EEEeccccccccccccccccceEEEcCEEEEEECccc
Confidence 444455544 56899999999999998654311232 322 1 1 2699999999988654
No 280
>PRK10262 thioredoxin reductase; Provisional
Probab=65.40 E-value=25 Score=32.12 Aligned_cols=53 Identities=13% Similarity=0.212 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~~ 220 (393)
+.+.+.+.+...+.+++.+ .|.+|...+ +.+. +..+.+++.+|+||+|+....
T Consensus 65 ~~~~~~~~~~~~~~~~~~~-~v~~v~~~~--~~~~-v~~~~~~~~~d~vilAtG~~~ 117 (321)
T PRK10262 65 LMERMHEHATKFETEIIFD-HINKVDLQN--RPFR-LTGDSGEYTCDALIIATGASA 117 (321)
T ss_pred HHHHHHHHHHHCCCEEEee-EEEEEEecC--CeEE-EEecCCEEEECEEEECCCCCC
Confidence 4455566666667777776 577787765 4343 444445689999999999864
No 281
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=63.74 E-value=19 Score=34.81 Aligned_cols=49 Identities=24% Similarity=0.333 Sum_probs=33.1
Q ss_pred HHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChhh
Q 016211 166 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (393)
Q Consensus 166 ~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~~ 220 (393)
+.+.+.++..|+++..+ .|..+.. .++. |..+|+++.+|+||+|+....
T Consensus 94 ~~~~~~l~~~gV~~~~g-~~~~v~~----~~v~-v~~~g~~~~~d~lIiATGs~p 142 (446)
T TIGR01424 94 GLYKRLLANAGVELLEG-RARLVGP----NTVE-VLQDGTTYTAKKILIAVGGRP 142 (446)
T ss_pred HHHHHHHHhCCcEEEEE-EEEEecC----CEEE-EecCCeEEEcCEEEEecCCcC
Confidence 34455566778998876 5655542 2243 444678899999999999753
No 282
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=63.43 E-value=12 Score=37.83 Aligned_cols=48 Identities=19% Similarity=0.207 Sum_probs=38.8
Q ss_pred HHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhhH
Q 016211 169 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL 221 (393)
Q Consensus 169 ~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~~ 221 (393)
....+++|++++++.+|.+|..++ . .|++ .|.++.+|..|+|+....+
T Consensus 66 ~dwy~~~~i~L~~~~~v~~idr~~--k---~V~t~~g~~~~YDkLilATGS~pf 114 (793)
T COG1251 66 NDWYEENGITLYTGEKVIQIDRAN--K---VVTTDAGRTVSYDKLIIATGSYPF 114 (793)
T ss_pred hhhHHHcCcEEEcCCeeEEeccCc--c---eEEccCCcEeecceeEEecCcccc
Confidence 445678999999999999999876 2 2455 5889999999999887653
No 283
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=62.71 E-value=15 Score=35.09 Aligned_cols=46 Identities=20% Similarity=0.272 Sum_probs=37.9
Q ss_pred HHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecCh
Q 016211 169 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGI 218 (393)
Q Consensus 169 ~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~ 218 (393)
-+..++.|.++++++.|+++...+ ..+ +..+|+++.++..|+|+..
T Consensus 134 ~e~Yke~gIe~~~~t~v~~~D~~~--K~l--~~~~Ge~~kys~LilATGs 179 (478)
T KOG1336|consen 134 PEFYKEKGIELILGTSVVKADLAS--KTL--VLGNGETLKYSKLIIATGS 179 (478)
T ss_pred hhhHhhcCceEEEcceeEEeeccc--cEE--EeCCCceeecceEEEeecC
Confidence 345678899999999999999887 332 3447999999999999988
No 284
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=62.12 E-value=27 Score=32.99 Aligned_cols=61 Identities=10% Similarity=0.016 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEe-cCCCCeEEEEEe--CCe--EEecCEEEEecChhh-HHHHhhc
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIY-DEERCCISDVVC--GKE--TYSAGAVVLAVGIST-LQELIKN 227 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~-~~~~~~v~~v~~--~g~--~~~ad~VI~a~p~~~-~~~Ll~~ 227 (393)
+.+.|.+.+.+.|+++++++.++++.. +++ .+ .|+. +|+ +++||.||-|-..+. +.+.++.
T Consensus 105 l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~--~~-~V~~~~~g~~~~i~adlvIGADG~~S~VR~~l~~ 171 (390)
T TIGR02360 105 VTRDLMEAREAAGLTTVYDADDVRLHDLAGD--RP-YVTFERDGERHRLDCDFIAGCDGFHGVSRASIPA 171 (390)
T ss_pred HHHHHHHHHHhcCCeEEEeeeeEEEEecCCC--cc-EEEEEECCeEEEEEeCEEEECCCCchhhHHhcCc
Confidence 556677777777899999999988865 332 23 2333 664 689999999988875 4555543
No 285
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=61.46 E-value=24 Score=38.06 Aligned_cols=49 Identities=14% Similarity=0.254 Sum_probs=36.1
Q ss_pred HHHHHcCCeEecCceeeeEEecCCCCeEEEEEe------------------CC--eEEecCEEEEecChh
Q 016211 170 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC------------------GK--ETYSAGAVVLAVGIS 219 (393)
Q Consensus 170 ~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~------------------~g--~~~~ad~VI~a~p~~ 219 (393)
+.+++.|++|++++.+.+|..+++ |++.+|.+ .| .++.||.||+|+...
T Consensus 617 ~~a~eeGI~~~~~~~p~~i~~~~~-G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~ 685 (1006)
T PRK12775 617 RHAKEEGIDFFFLHSPVEIYVDAE-GSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTK 685 (1006)
T ss_pred HHHHhCCCEEEecCCcEEEEeCCC-CeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcC
Confidence 346677999999999999986544 56766543 11 258999999999754
No 286
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=59.99 E-value=22 Score=36.23 Aligned_cols=43 Identities=26% Similarity=0.238 Sum_probs=33.8
Q ss_pred cCC-eEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhh
Q 016211 175 RGC-EFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (393)
Q Consensus 175 ~G~-~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~ 220 (393)
.+. .|+.+++|++|+.++ +++. |++ +|+++++|.||.|-..+.
T Consensus 204 lg~~~i~~g~~V~~I~~~~--d~Vt-V~~~dG~ti~aDlVVGADG~~S 248 (668)
T PLN02927 204 VGEDVIRNESNVVDFEDSG--DKVT-VVLENGQRYEGDLLVGADGIWS 248 (668)
T ss_pred CCCCEEEcCCEEEEEEEeC--CEEE-EEECCCCEEEcCEEEECCCCCc
Confidence 344 478999999999876 4566 555 677899999999999876
No 287
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=58.95 E-value=19 Score=35.79 Aligned_cols=55 Identities=29% Similarity=0.356 Sum_probs=38.7
Q ss_pred HHHHHHcC-CeEecCceeeeEEecCCCCeEEEEEe--C-C---eE-EecCEEEEecChhhHHHHh
Q 016211 169 MDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC--G-K---ET-YSAGAVVLAVGISTLQELI 225 (393)
Q Consensus 169 ~~~l~~~G-~~i~l~~~V~~I~~~~~~~~v~~v~~--~-g---~~-~~ad~VI~a~p~~~~~~Ll 225 (393)
...+.+.+ ..|.+++.|++|..++ +++++|.. + + +. +.++.||++...-...+||
T Consensus 209 l~~a~~~~nl~v~t~a~v~ri~~~~--~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL 271 (542)
T COG2303 209 LKPALKRPNLTLLTGARVRRILLEG--DRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLL 271 (542)
T ss_pred chhHhcCCceEEecCCEEEEEEEEC--CeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHH
Confidence 33333444 7999999999999998 56777765 3 2 22 4678899988777666654
No 288
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=56.19 E-value=4.3 Score=34.63 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=21.5
Q ss_pred CCCCceEEeccccc---------cCCCc--cccchhcc
Q 016211 362 TSFPNLFMAGDWIT---------TRHGS--WSQVTFKL 388 (393)
Q Consensus 362 ~~~~~L~laGd~~~---------~~~ga--~s~~~a~~ 388 (393)
.-+||||.||-.+. +..|+ +||++||+
T Consensus 216 eV~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe 253 (262)
T COG1635 216 EVYPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAE 253 (262)
T ss_pred cccCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHH
Confidence 34699999998876 36677 69999986
No 289
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=55.67 E-value=58 Score=33.15 Aligned_cols=62 Identities=29% Similarity=0.306 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHcCC--eEecCceeeeEEecCCC-CeEEEEEe-------CC--eEEecCEEEEecChhh-HHHHhh
Q 016211 164 IFEPWMDSMRTRGC--EFLDGRRVTDFIYDEER-CCISDVVC-------GK--ETYSAGAVVLAVGIST-LQELIK 226 (393)
Q Consensus 164 l~~~l~~~l~~~G~--~i~l~~~V~~I~~~~~~-~~v~~v~~-------~g--~~~~ad~VI~a~p~~~-~~~Ll~ 226 (393)
+-+.|.+.+++.|+ +++.++.|++++.++++ ..|. |++ +| ++++||.||-|-..+. +.+.+.
T Consensus 143 le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~-v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~lg 217 (634)
T PRK08294 143 VHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVT-VTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAIG 217 (634)
T ss_pred HHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEE-EEEEECCCCCCCceEEEEeCEEEECCCCchHHHHhcC
Confidence 55667777777664 78999999999886531 1243 443 24 5799999999999875 456553
No 290
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=54.67 E-value=43 Score=33.52 Aligned_cols=52 Identities=25% Similarity=0.153 Sum_probs=35.2
Q ss_pred HHHcCCeEecCceeeeEEecCCCCeEEEEEe-----------------CC--eEEecCEEEEecChhhHHHHh
Q 016211 172 MRTRGCEFLDGRRVTDFIYDEERCCISDVVC-----------------GK--ETYSAGAVVLAVGISTLQELI 225 (393)
Q Consensus 172 l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-----------------~g--~~~~ad~VI~a~p~~~~~~Ll 225 (393)
+.+.|++|++++.+.+|..+++ +.+ ++.+ .| .++.+|.||+|+....-..++
T Consensus 315 a~~~GVki~~~~~~~~i~~~~~-~~~-~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~ 385 (564)
T PRK12771 315 ALREGVEINWLRTPVEIEGDEN-GAT-GLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGL 385 (564)
T ss_pred HHHcCCEEEecCCcEEEEcCCC-CEE-EEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhh
Confidence 4567999999999999986653 332 3321 12 368999999999865433333
No 291
>PLN02785 Protein HOTHEAD
Probab=54.01 E-value=32 Score=34.59 Aligned_cols=53 Identities=11% Similarity=0.209 Sum_probs=36.3
Q ss_pred HHcCCeEecCceeeeEEecCCC--CeEEEEEe---CCeEEe-------cCEEEEecChhhHHHHh
Q 016211 173 RTRGCEFLDGRRVTDFIYDEER--CCISDVVC---GKETYS-------AGAVVLAVGISTLQELI 225 (393)
Q Consensus 173 ~~~G~~i~l~~~V~~I~~~~~~--~~v~~v~~---~g~~~~-------ad~VI~a~p~~~~~~Ll 225 (393)
...+.+|.+++.|++|..++++ ++++||+. +|++.. .+.||++...-...+||
T Consensus 231 ~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL 295 (587)
T PLN02785 231 NPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQML 295 (587)
T ss_pred CCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEECCCceEEEEeecccCceEEecccccCCHHHH
Confidence 3345899999999999987531 26888876 354332 35788887775555543
No 292
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=53.80 E-value=50 Score=31.30 Aligned_cols=61 Identities=16% Similarity=0.110 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe---C-----C--eEEecCEEEEecChhh-HHHHh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---G-----K--ETYSAGAVVLAVGIST-LQELI 225 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~-----g--~~~~ad~VI~a~p~~~-~~~Ll 225 (393)
+-+.|.+.+++.|++|+.++ |.++....+.+...+|+. + | .+++||.||.|..++. +.+.+
T Consensus 95 ~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S~v~~~~ 166 (398)
T TIGR02028 95 LDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANSRVAKEI 166 (398)
T ss_pred HHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcchHHHHHh
Confidence 43456777778899998886 777754211012223432 1 3 3789999999999865 34433
No 293
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=52.10 E-value=36 Score=32.90 Aligned_cols=46 Identities=13% Similarity=0.210 Sum_probs=32.4
Q ss_pred HHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChh
Q 016211 166 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (393)
Q Consensus 166 ~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~ 219 (393)
+.+...+++.|+++++++.+. .++ +. |.++|+++.+|+||+|+...
T Consensus 95 ~~~~~~l~~~gv~~~~g~~~~---~~~--~~---v~v~~~~~~~d~vIiAtGs~ 140 (450)
T TIGR01421 95 GIYQKNLEKNKVDVIFGHARF---TKD--GT---VEVNGRDYTAPHILIATGGK 140 (450)
T ss_pred HHHHHHHHhCCCEEEEEEEEE---ccC--CE---EEECCEEEEeCEEEEecCCC
Confidence 334555667799999998652 222 33 34577889999999999965
No 294
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=51.88 E-value=5 Score=35.51 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=21.0
Q ss_pred CCCceEEecccccc---------CCCc--cccchhcc
Q 016211 363 SFPNLFMAGDWITT---------RHGS--WSQVTFKL 388 (393)
Q Consensus 363 ~~~~L~laGd~~~~---------~~ga--~s~~~a~~ 388 (393)
-+||||.||-.... ..|+ +||+|||+
T Consensus 212 ~~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~ 248 (257)
T PRK04176 212 VYPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAE 248 (257)
T ss_pred EcCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHH
Confidence 36999999987763 6677 69999986
No 295
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=51.84 E-value=29 Score=32.58 Aligned_cols=38 Identities=13% Similarity=0.134 Sum_probs=28.9
Q ss_pred CCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChh
Q 016211 176 GCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (393)
Q Consensus 176 G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~ 219 (393)
+..|++++.|.++. . +.++ + .+|++++||.||-|.+.+
T Consensus 100 ~~~i~~~~~V~~v~--~--~~v~-l-~dg~~~~A~~VI~A~G~~ 137 (370)
T TIGR01789 100 PEGVILGRKAVGLD--A--DGVD-L-APGTRINARSVIDCRGFK 137 (370)
T ss_pred cccEEecCEEEEEe--C--CEEE-E-CCCCEEEeeEEEECCCCC
Confidence 33388899999993 3 2343 3 578899999999999976
No 296
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=51.81 E-value=26 Score=33.01 Aligned_cols=48 Identities=21% Similarity=0.257 Sum_probs=34.8
Q ss_pred CeEecCceeeeEEecCCCCeEEEEEe-----C-CeEEecCEEEEecChhh-HHHHhh
Q 016211 177 CEFLDGRRVTDFIYDEERCCISDVVC-----G-KETYSAGAVVLAVGIST-LQELIK 226 (393)
Q Consensus 177 ~~i~l~~~V~~I~~~~~~~~v~~v~~-----~-g~~~~ad~VI~a~p~~~-~~~Ll~ 226 (393)
++++.++.|.+++.+++ |++. +.+ + .++++.|+||+||.-.. ...++.
T Consensus 293 v~l~~~~ev~~~~~~G~-g~~~-l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~ 347 (436)
T COG3486 293 VRLLSLSEVQSVEPAGD-GRYR-LTLRHHETGELETVETDAVILATGYRRAVPSFLE 347 (436)
T ss_pred eeeccccceeeeecCCC-ceEE-EEEeeccCCCceEEEeeEEEEecccccCCchhhh
Confidence 57889999999998886 5543 444 1 36789999999998873 334443
No 297
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=51.38 E-value=49 Score=35.41 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=33.5
Q ss_pred HHHcCCeEecCceeeeEEecCCCCeEEEEEe------------------CC--eEEecCEEEEecChh
Q 016211 172 MRTRGCEFLDGRRVTDFIYDEERCCISDVVC------------------GK--ETYSAGAVVLAVGIS 219 (393)
Q Consensus 172 l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~------------------~g--~~~~ad~VI~a~p~~ 219 (393)
+.+.|++++.++.+++|..+++++++.++.+ .| .++.||.||+|+.-.
T Consensus 494 a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~ 561 (944)
T PRK12779 494 ALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNT 561 (944)
T ss_pred HHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcC
Confidence 3456999999999999986533235554422 12 358999999998754
No 298
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=51.33 E-value=4.9 Score=35.47 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=21.1
Q ss_pred CCCceEEecccccc---------CCCc--cccchhcc
Q 016211 363 SFPNLFMAGDWITT---------RHGS--WSQVTFKL 388 (393)
Q Consensus 363 ~~~~L~laGd~~~~---------~~ga--~s~~~a~~ 388 (393)
-+||||.||-.... ..|+ +||+|||+
T Consensus 211 ~~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~ 247 (254)
T TIGR00292 211 VVPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAE 247 (254)
T ss_pred ccCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHH
Confidence 47999999988763 5677 69999986
No 299
>PRK06116 glutathione reductase; Validated
Probab=49.47 E-value=35 Score=32.94 Aligned_cols=45 Identities=16% Similarity=0.345 Sum_probs=30.8
Q ss_pred HHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChh
Q 016211 167 PWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIS 219 (393)
Q Consensus 167 ~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~ 219 (393)
.+.+.+.+.|++++.++ |+.+. . .++ .++|+++++|+||+|+...
T Consensus 98 ~~~~~l~~~gv~~~~g~-~~~v~--~--~~v---~~~g~~~~~d~lViATGs~ 142 (450)
T PRK06116 98 SYRNGLENNGVDLIEGF-ARFVD--A--HTV---EVNGERYTADHILIATGGR 142 (450)
T ss_pred HHHHHHHhCCCEEEEEE-EEEcc--C--CEE---EECCEEEEeCEEEEecCCC
Confidence 34444566789998875 44442 2 333 3478889999999999964
No 300
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=47.85 E-value=65 Score=29.61 Aligned_cols=52 Identities=29% Similarity=0.443 Sum_probs=38.2
Q ss_pred hHHHHHHHHHH---cC-CeEecCceeeeEEecCCCCeEEEEEe---------CC----------eEEecCEEEEecC
Q 016211 164 IFEPWMDSMRT---RG-CEFLDGRRVTDFIYDEERCCISDVVC---------GK----------ETYSAGAVVLAVG 217 (393)
Q Consensus 164 l~~~l~~~l~~---~G-~~i~l~~~V~~I~~~~~~~~v~~v~~---------~g----------~~~~ad~VI~a~p 217 (393)
+.+++++++++ .| +++++.++|.++..++ ++|++|.- .| -++.|.+||++..
T Consensus 151 vl~pFvr~~re~~~~~~v~f~~RHrV~~l~~t~--grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A~aviv~SG 225 (552)
T COG3573 151 VLEPFVRRLREAQRRGRVTFRFRHRVDGLTTTG--GRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSASAVIVASG 225 (552)
T ss_pred hhhHHHHHHHHHHhCCceEEEeeeeccceEeeC--CeEeeecccccCCCccccCCCccceeecceEEeeeeEEEecC
Confidence 55777777766 44 6899999999999998 67877631 01 2467889999864
No 301
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=45.31 E-value=85 Score=30.40 Aligned_cols=60 Identities=15% Similarity=0.151 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCC-CeEEEEEe-C-------C--eEEecCEEEEecChhh-HHHHh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEER-CCISDVVC-G-------K--ETYSAGAVVLAVGIST-LQELI 225 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~-~~v~~v~~-~-------g--~~~~ad~VI~a~p~~~-~~~Ll 225 (393)
+-+.|.+.+++.|++++.+ .|++|...+++ +.+ .|++ + | .+++||.||-|..++. +.+.+
T Consensus 134 ~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~-~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~S~vrr~l 205 (450)
T PLN00093 134 LDSFLRERAQSNGATLING-LFTRIDVPKDPNGPY-VIHYTSYDSGSGAGTPKTLEVDAVIGADGANSRVAKDI 205 (450)
T ss_pred HHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcE-EEEEEeccccccCCCccEEEeCEEEEcCCcchHHHHHh
Confidence 4445666677789999866 58888753211 223 2433 1 3 4799999999999765 34433
No 302
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=44.20 E-value=34 Score=32.36 Aligned_cols=63 Identities=17% Similarity=0.333 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeC-------C---------eEEecCEEEEecChh--hHHHHh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-------K---------ETYSAGAVVLAVGIS--TLQELI 225 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~-------g---------~~~~ad~VI~a~p~~--~~~~Ll 225 (393)
++.-|-+++++.|++|.-+..+.+|..++| |.|.||.++ | -++.|+.-|.|-.-+ ..++++
T Consensus 185 ~v~wLg~kAEe~GvEiyPg~aaSevly~ed-gsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~ 263 (621)
T KOG2415|consen 185 LVRWLGEKAEELGVEIYPGFAASEVLYDED-GSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQII 263 (621)
T ss_pred HHHHHHHHHHhhCceeccccchhheeEcCC-CcEeeEeeccccccCCCCccccccccceecceeEEEeccccchhHHHHH
Confidence 566677888999999999999999999987 678888762 1 246788888875543 345555
Q ss_pred hc
Q 016211 226 KN 227 (393)
Q Consensus 226 ~~ 227 (393)
..
T Consensus 264 kk 265 (621)
T KOG2415|consen 264 KK 265 (621)
T ss_pred HH
Confidence 44
No 303
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=42.75 E-value=58 Score=31.19 Aligned_cols=50 Identities=14% Similarity=0.103 Sum_probs=33.2
Q ss_pred HHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEE---------eCCeEEecCEEEEecChhh
Q 016211 167 PWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVV---------CGKETYSAGAVVLAVGIST 220 (393)
Q Consensus 167 ~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~---------~~g~~~~ad~VI~a~p~~~ 220 (393)
++.+.++..|.++ ...+|++|..++ +.+. +. .+|+++.+|++|+|+....
T Consensus 67 ~~~~~~~~~~~~~-i~~~V~~Id~~~--~~v~-~~~~~~~~~~~~~g~~i~yD~LViAtGs~~ 125 (424)
T PTZ00318 67 PVRPALAKLPNRY-LRAVVYDVDFEE--KRVK-CGVVSKSNNANVNTFSVPYDKLVVAHGARP 125 (424)
T ss_pred HHHHHhccCCeEE-EEEEEEEEEcCC--CEEE-EecccccccccCCceEecCCEEEECCCccc
Confidence 3444455456654 457899998776 4443 21 1456799999999998864
No 304
>PLN02985 squalene monooxygenase
Probab=42.37 E-value=1.1e+02 Score=30.31 Aligned_cols=60 Identities=18% Similarity=0.226 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHc-CCeEecCceeeeEEecCCCCeEEEEEe---CCe--EEecCEEEEecChhh-HHHHhh
Q 016211 164 IFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC---GKE--TYSAGAVVLAVGIST-LQELIK 226 (393)
Q Consensus 164 l~~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~---~g~--~~~ad~VI~a~p~~~-~~~Ll~ 226 (393)
+.+.|.+.+++. +++++.+ .|+++..++ +.+.+|++ +|+ +++||.||.|..... +++.+.
T Consensus 149 l~~~L~~~a~~~~~V~i~~g-tvv~li~~~--~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S~vR~~l~ 215 (514)
T PLN02985 149 FVQRLRQKASSLPNVRLEEG-TVKSLIEEK--GVIKGVTYKNSAGEETTALAPLTVVCDGCYSNLRRSLN 215 (514)
T ss_pred HHHHHHHHHHhCCCeEEEee-eEEEEEEcC--CEEEEEEEEcCCCCEEEEECCEEEECCCCchHHHHHhc
Confidence 667777777665 5788755 577776655 45656665 454 367999999998875 455443
No 305
>PLN02661 Putative thiazole synthesis
Probab=41.87 E-value=9.7 Score=35.31 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=21.2
Q ss_pred CCCceEEecccccc---------CCCc--cccchhcc
Q 016211 363 SFPNLFMAGDWITT---------RHGS--WSQVTFKL 388 (393)
Q Consensus 363 ~~~~L~laGd~~~~---------~~ga--~s~~~a~~ 388 (393)
-+||||.||-.... ..|+ +||+|||+
T Consensus 285 v~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~ 321 (357)
T PLN02661 285 VVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAH 321 (357)
T ss_pred ccCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHH
Confidence 47999999988763 6677 69999986
No 306
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=41.50 E-value=38 Score=33.24 Aligned_cols=68 Identities=16% Similarity=0.191 Sum_probs=44.7
Q ss_pred ceEEecCCchh-HhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe----CCeE--EecCEEEEecChhh
Q 016211 152 DLVWCRGTLRE-KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKET--YSAGAVVLAVGIST 220 (393)
Q Consensus 152 ~~~~~~gG~~~-~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~~--~~ad~VI~a~p~~~ 220 (393)
.+.|.+|.+.. ++.-.++--+..+|..+.-...|.++..+++ +++.|+.+ .|++ ++|..||-|+.|-.
T Consensus 213 a~VYyDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~-~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfs 287 (680)
T KOG0042|consen 213 AMVYYDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKD-GKVIGARARDHITGKEYEIRAKVVVNATGPFS 287 (680)
T ss_pred EEEEecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCC-CceeeeEEEEeecCcEEEEEEEEEEeCCCCcc
Confidence 35666666544 2322222223456888888999999999887 56767665 2554 67888888888754
No 307
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=40.50 E-value=77 Score=30.79 Aligned_cols=50 Identities=20% Similarity=0.242 Sum_probs=32.4
Q ss_pred HHHHHHHHcCCeEecCceeeeEE--ecCCCCeEEEEEe-CCe--EEecCEEEEecChhh
Q 016211 167 PWMDSMRTRGCEFLDGRRVTDFI--YDEERCCISDVVC-GKE--TYSAGAVVLAVGIST 220 (393)
Q Consensus 167 ~l~~~l~~~G~~i~l~~~V~~I~--~~~~~~~v~~v~~-~g~--~~~ad~VI~a~p~~~ 220 (393)
.+.+.++..|++++.++. +.+. .++ .++. |.+ +|+ ++.+|+||+|+....
T Consensus 97 ~~~~~l~~~gV~~~~g~~-~~~~~~~~~--~~v~-V~~~~g~~~~~~~d~lViATGs~p 151 (466)
T PRK07845 97 DIRARLEREGVRVIAGRG-RLIDPGLGP--HRVK-VTTADGGEETLDADVVLIATGASP 151 (466)
T ss_pred HHHHHHHHCCCEEEEEEE-EEeecccCC--CEEE-EEeCCCceEEEecCEEEEcCCCCC
Confidence 344556677899987754 3333 333 3444 544 454 699999999998753
No 308
>PRK06444 prephenate dehydrogenase; Provisional
Probab=39.78 E-value=65 Score=27.17 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=17.3
Q ss_pred ecCEEEEecChhhHHHHhhc
Q 016211 208 SAGAVVLAVGISTLQELIKN 227 (393)
Q Consensus 208 ~ad~VI~a~p~~~~~~Ll~~ 227 (393)
.||.||+|+|+..+.+++..
T Consensus 31 ~~DlVilavPv~~~~~~i~~ 50 (197)
T PRK06444 31 KADHAFLSVPIDAALNYIES 50 (197)
T ss_pred CCCEEEEeCCHHHHHHHHHH
Confidence 48999999999998887765
No 309
>PLN02546 glutathione reductase
Probab=39.00 E-value=75 Score=31.76 Aligned_cols=47 Identities=19% Similarity=0.304 Sum_probs=30.1
Q ss_pred HHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChhh
Q 016211 166 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (393)
Q Consensus 166 ~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~~ 220 (393)
+.+.+.++..|++++.+. ++.|. . .. |.++|+++.+|+||+|+....
T Consensus 182 ~~~~~~l~~~gV~~i~G~-a~~vd--~--~~---V~v~G~~~~~D~LVIATGs~p 228 (558)
T PLN02546 182 GIYKNILKNAGVTLIEGR-GKIVD--P--HT---VDVDGKLYTARNILIAVGGRP 228 (558)
T ss_pred HHHHHHHHhCCcEEEEeE-EEEcc--C--CE---EEECCEEEECCEEEEeCCCCC
Confidence 334444666788887653 23332 2 22 345788899999999998754
No 310
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=38.98 E-value=81 Score=30.88 Aligned_cols=43 Identities=26% Similarity=0.326 Sum_probs=27.9
Q ss_pred cCCe-EecCceeeeEEecCCCCeEEEEEe---------CC-----------eEEecCEEEEecCh
Q 016211 175 RGCE-FLDGRRVTDFIYDEERCCISDVVC---------GK-----------ETYSAGAVVLAVGI 218 (393)
Q Consensus 175 ~G~~-i~l~~~V~~I~~~~~~~~v~~v~~---------~g-----------~~~~ad~VI~a~p~ 218 (393)
.|++ +++++.+.+|..+++ +++.+|.+ +| .++.||.||+|+..
T Consensus 349 ~gv~~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~ 412 (485)
T TIGR01317 349 YGRDPREYSILTKEFIGDDE-GKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGF 412 (485)
T ss_pred cCccceEEecCcEEEEEcCC-CeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCc
Confidence 4543 456888888875432 45665542 12 36899999999875
No 311
>PRK06370 mercuric reductase; Validated
Probab=37.20 E-value=72 Score=30.92 Aligned_cols=45 Identities=20% Similarity=0.227 Sum_probs=31.0
Q ss_pred HHHHHHHc-CCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChhh
Q 016211 168 WMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (393)
Q Consensus 168 l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~~ 220 (393)
+.+.+++. |+++++++.+. .++ ++ |.++|+++.+|+||+|+....
T Consensus 100 ~~~~~~~~~gv~v~~g~~~~---~~~--~~---v~v~~~~~~~d~lViATGs~p 145 (463)
T PRK06370 100 SEQWLRGLEGVDVFRGHARF---ESP--NT---VRVGGETLRAKRIFINTGARA 145 (463)
T ss_pred HHHHHhcCCCcEEEEEEEEE---ccC--CE---EEECcEEEEeCEEEEcCCCCC
Confidence 33445665 89999998762 222 33 345777899999999999743
No 312
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=35.65 E-value=83 Score=28.35 Aligned_cols=61 Identities=16% Similarity=0.172 Sum_probs=41.6
Q ss_pred HhHHHHHHHHHHcC-CeEecCceeeeEEecCCCCeEEEEEeC-----CeEEecCEEEEecChhhHHHHhhc
Q 016211 163 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCG-----KETYSAGAVVLAVGISTLQELIKN 227 (393)
Q Consensus 163 ~l~~~l~~~l~~~G-~~i~l~~~V~~I~~~~~~~~v~~v~~~-----g~~~~ad~VI~a~p~~~~~~Ll~~ 227 (393)
++...|...+++.| +++.++ .|.+|..+. +|+.+|... ....+.+++|+++.|++-+ |++.
T Consensus 148 lFc~~i~sea~k~~~V~lv~G-kv~ev~dEk--~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTsk-llp~ 214 (380)
T KOG2852|consen 148 LFCHFILSEAEKRGGVKLVFG-KVKEVSDEK--HRINSVPKAEAEDTIIKADVHKIVVSAGPWTSK-LLPF 214 (380)
T ss_pred HHHHHHHHHHHhhcCeEEEEe-eeEEeeccc--ccccccchhhhcCceEEeeeeEEEEecCCCchh-hccc
Confidence 37777888887776 687776 467776444 566655442 3456778999999999854 4444
No 313
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=34.37 E-value=69 Score=29.66 Aligned_cols=57 Identities=12% Similarity=0.133 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCeEEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~~~~ad~VI~a~p~~~ 220 (393)
+..+|.+..++..++|....++++++..+..+....|++ +|..+.++.||+++.+.=
T Consensus 268 l~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArW 325 (520)
T COG3634 268 LAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARW 325 (520)
T ss_pred HHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcch
Confidence 667778888878899999999999997532133445777 688999999999998853
No 314
>PF03275 GLF: UDP-galactopyranose mutase; InterPro: IPR015899 UDP-galactopyranose mutase (5.4.99.9 from EC) is involved in the conversion of UDP-GALP into UDP-GALF through a 2-keto intermediate, and contains FAD as a cofactor. The gene is known as glf, ceoA, and rfbD. It is known experimentally in Escherichia coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.; GO: 0008767 UDP-galactopyranose mutase activity; PDB: 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 1V0J_D 3MJ4_G 3HDQ_E ....
Probab=33.49 E-value=5.5 Score=33.60 Aligned_cols=93 Identities=12% Similarity=-0.041 Sum_probs=51.0
Q ss_pred HHHHHHHhhcCCCcccccHHHHHHHHHHH-HhhccCCcc-eEEecCCchhHhHHHHHHHHHHcCCeEecCceeeeEEecC
Q 016211 115 VIGPLVQVGLFAPAEQCSAAATLGILYFI-ILAHQKNFD-LVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDE 192 (393)
Q Consensus 115 ~~~p~~~~~~~~~~~~~s~~~~~~~~~~~-~~~~~~~~~-~~~~~gG~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~ 192 (393)
|+.+.....||.+|+++++.....+=-++ ...+--... -++|++|... +.+.| |...+.+|+||+....+...+
T Consensus 2 ~f~~YT~KQWg~~p~eL~~~v~~RvPvr~~~d~~YF~d~yQgiP~~GYT~-~fe~m---L~h~~I~v~l~td~~~~~~~~ 77 (204)
T PF03275_consen 2 FFKGYTKKQWGVDPEELDASVIKRVPVRFSYDDRYFNDKYQGIPKDGYTK-MFENM---LDHPNIEVRLNTDFFDIIEFG 77 (204)
T ss_dssp HTHHHHHHHHTSSGGGSBCCCCSCS-BBSSS--BS--SSEEEEETTHHHH-HHHHH---C-STTEEEECS--GGGCHHHH
T ss_pred ccCccCHHHcCCChHHCCHHHhcCCceeeCCCCccccChhhhCchhCHHH-HHHHH---hCCCceEEEcCCCHHHhhccc
Confidence 56778888899999999884322110000 000000111 2778899766 44433 333578999998776665411
Q ss_pred CCCeEEEEEeCCeEEecCEEEEecChhhHHH
Q 016211 193 ERCCISDVVCGKETYSAGAVVLAVGISTLQE 223 (393)
Q Consensus 193 ~~~~v~~v~~~g~~~~ad~VI~a~p~~~~~~ 223 (393)
....+++||.+.|.+.+-.
T Consensus 78 ------------~~~~~~~viyTG~iDe~F~ 96 (204)
T PF03275_consen 78 ------------GEPYADKVIYTGPIDEYFD 96 (204)
T ss_dssp ------------CCCTEEEEEE-S-HHHHTT
T ss_pred ------------ccccCCeEEEeCCHHHHhC
Confidence 1124789999999987654
No 315
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=32.35 E-value=50 Score=32.50 Aligned_cols=52 Identities=17% Similarity=0.139 Sum_probs=28.6
Q ss_pred HHHHHhhhhcCCCCCceeeeEEeecCCCc-cccCCCCcCCCCCCCC-CCCceEEeccccc
Q 016211 318 AVSYLSKCIKDFSTATVMDHKIRRFPKSL-THFFPGSYKYMMRGFT-SFPNLFMAGDWIT 375 (393)
Q Consensus 318 ~~~~l~~~~p~~~~~~~~~~~~~~~~~a~-~~~~~g~~~~~~~~~~-~~~~L~laGd~~~ 375 (393)
+..++-+-+|+++..+ +.|..+|+ |.+... ....|..+| .++||||||.--.
T Consensus 317 VQ~~~irsipGlEna~-----i~rpgYAIEYD~v~p-~qL~~tLEtK~I~GLf~AGQING 370 (621)
T COG0445 317 VQEQIIRSIPGLENAE-----ILRPGYAIEYDYVDP-RQLKPTLETKKIKGLFFAGQING 370 (621)
T ss_pred HHHHHHHhCcccccce-----eeccceeeeecccCh-hhcccchhhceecceEEcccccC
Confidence 4556667788886433 34444443 112111 122355555 4899999998443
No 316
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=32.32 E-value=1.1e+02 Score=31.19 Aligned_cols=45 Identities=16% Similarity=0.135 Sum_probs=31.0
Q ss_pred HHcCCeEecCceeeeEEecCCCCeE--EEEE----------------eCC--eEEecCEEEEecChh
Q 016211 173 RTRGCEFLDGRRVTDFIYDEERCCI--SDVV----------------CGK--ETYSAGAVVLAVGIS 219 (393)
Q Consensus 173 ~~~G~~i~l~~~V~~I~~~~~~~~v--~~v~----------------~~g--~~~~ad~VI~a~p~~ 219 (393)
.+.|++|++++.+.+|..++ +++ ..+. .+| .++.+|.||+|+...
T Consensus 372 ~~eGV~i~~~~~~~~i~~~~--~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~ 436 (652)
T PRK12814 372 LAEGVSLRELAAPVSIERSE--GGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQ 436 (652)
T ss_pred HHcCCcEEeccCcEEEEecC--CeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCc
Confidence 45699999999999998655 322 1111 122 258999999999864
No 317
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=31.79 E-value=1.5e+02 Score=28.76 Aligned_cols=41 Identities=17% Similarity=-0.024 Sum_probs=31.1
Q ss_pred eEecCceeeeEEecCCCCeEEEEEe-C--C--eEEecCEEEEecChhh
Q 016211 178 EFLDGRRVTDFIYDEERCCISDVVC-G--K--ETYSAGAVVLAVGIST 220 (393)
Q Consensus 178 ~i~l~~~V~~I~~~~~~~~v~~v~~-~--g--~~~~ad~VI~a~p~~~ 220 (393)
.|++++.|.++...++ |.+ .|.+ + + ++..+|.||+|+....
T Consensus 108 ~i~f~~~v~~v~~~~~-gkW-~V~~~~~~~~~~~~ifd~VvVctGh~~ 153 (448)
T KOG1399|consen 108 MINFNTEVVRVDSIDK-GKW-RVTTKDNGTQIEEEIFDAVVVCTGHYV 153 (448)
T ss_pred heEecccEEEEeeccC-Cce-eEEEecCCcceeEEEeeEEEEcccCcC
Confidence 7999999999988763 334 4655 3 2 4678999999999884
No 318
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=31.54 E-value=1.3e+02 Score=32.50 Aligned_cols=54 Identities=28% Similarity=0.252 Sum_probs=33.6
Q ss_pred HHcCCeEecCceeeeEEecCC-------------CCeEEEEEeC-CeEEecCEEEEecChhhHHHHhh
Q 016211 173 RTRGCEFLDGRRVTDFIYDEE-------------RCCISDVVCG-KETYSAGAVVLAVGISTLQELIK 226 (393)
Q Consensus 173 ~~~G~~i~l~~~V~~I~~~~~-------------~~~v~~v~~~-g~~~~ad~VI~a~p~~~~~~Ll~ 226 (393)
.+.|++++.++.+.+|..++. .|+...+..+ +.++.||.||+|++...-..++.
T Consensus 718 leeGVe~~~~~~p~~I~~dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntelle 785 (1019)
T PRK09853 718 LEDGVEFKELLNPESFDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELLK 785 (1019)
T ss_pred HHcCCEEEeCCceEEEEcCCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhHHH
Confidence 356899999998888863210 0111112222 35799999999998865444443
No 319
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=30.22 E-value=1.1e+02 Score=28.95 Aligned_cols=43 Identities=26% Similarity=0.267 Sum_probs=27.3
Q ss_pred CeEecCceeeeEEecCCCCeE--EEEEeCCeEEecCEEEEecChh
Q 016211 177 CEFLDGRRVTDFIYDEERCCI--SDVVCGKETYSAGAVVLAVGIS 219 (393)
Q Consensus 177 ~~i~l~~~V~~I~~~~~~~~v--~~v~~~g~~~~ad~VI~a~p~~ 219 (393)
-.+++|++|++|..-+.+..+ ..++.++..++|+.+|+.+...
T Consensus 112 ~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~ 156 (436)
T COG3486 112 PSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQ 156 (436)
T ss_pred CccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCC
Confidence 368999999977322211112 1233367789999999987653
No 320
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=30.13 E-value=56 Score=26.40 Aligned_cols=79 Identities=22% Similarity=0.178 Sum_probs=42.2
Q ss_pred CCchhHhHHHHHHHHHHcCCeEe--cCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChhhH--HHHhhcccccCc
Q 016211 158 GTLREKIFEPWMDSMRTRGCEFL--DGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL--QELIKNSILCNR 233 (393)
Q Consensus 158 gG~~~~l~~~l~~~l~~~G~~i~--l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~~~--~~Ll~~~~~~~~ 233 (393)
|..++ +++.++..|++.|.++- --+.|.++ + --.+|+||++.|..-- .+-+..- + .
T Consensus 12 GqT~k-IA~~iA~~L~e~g~qvdi~dl~~~~~~--------------~--l~~ydavVIgAsI~~~h~~~~~~~F-v--~ 71 (175)
T COG4635 12 GQTRK-IAEYIASHLRESGIQVDIQDLHAVEEP--------------A--LEDYDAVVIGASIRYGHFHEAVQSF-V--K 71 (175)
T ss_pred CcHHH-HHHHHHHHhhhcCCeeeeeehhhhhcc--------------C--hhhCceEEEecchhhhhhHHHHHHH-H--H
Confidence 55555 88889999998886543 22111111 1 1147999999998653 2222221 0 1
Q ss_pred HHHHhhccCCceeEEEEEEEeccC
Q 016211 234 EEFLKVLNLASIDVVSVKLWFDKK 257 (393)
Q Consensus 234 ~~~~~~~~~~~~~~~~v~l~~~~~ 257 (393)
.+.+.+... ....++|.+.+++.
T Consensus 72 k~~e~L~~k-P~A~f~vnl~a~k~ 94 (175)
T COG4635 72 KHAEALSTK-PSAFFSVNLTARKE 94 (175)
T ss_pred HHHHHHhcC-CceEEEeehhhccc
Confidence 111233332 34567777777665
No 321
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=30.09 E-value=46 Score=23.85 Aligned_cols=21 Identities=33% Similarity=0.427 Sum_probs=16.2
Q ss_pred ecCEEEEecChhhHHHHhhcc
Q 016211 208 SAGAVVLAVGISTLQELIKNS 228 (393)
Q Consensus 208 ~ad~VI~a~p~~~~~~Ll~~~ 228 (393)
.+|.||+++||+.+..++...
T Consensus 61 ~advvilav~p~~~~~v~~~i 81 (96)
T PF03807_consen 61 EADVVILAVKPQQLPEVLSEI 81 (96)
T ss_dssp HTSEEEE-S-GGGHHHHHHHH
T ss_pred cCCEEEEEECHHHHHHHHHHH
Confidence 589999999999999887664
No 322
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=29.81 E-value=5e+02 Score=24.76 Aligned_cols=44 Identities=11% Similarity=0.169 Sum_probs=27.8
Q ss_pred HhHHHHHHHHHHcC-CeEecCceeeeEEecCCCCeEEEEEe---CCeEEec
Q 016211 163 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC---GKETYSA 209 (393)
Q Consensus 163 ~l~~~l~~~l~~~G-~~i~l~~~V~~I~~~~~~~~v~~v~~---~g~~~~a 209 (393)
++++.|.+++.+.- +++ ..-.|.++..++ |.+.||+. +|++.++
T Consensus 148 RFvq~lR~ka~slpNV~~-eeGtV~sLlee~--gvvkGV~yk~k~gee~~~ 195 (509)
T KOG1298|consen 148 RFVQRLRKKAASLPNVRL-EEGTVKSLLEEE--GVVKGVTYKNKEGEEVEA 195 (509)
T ss_pred HHHHHHHHHHhcCCCeEE-eeeeHHHHHhcc--CeEEeEEEecCCCceEEE
Confidence 47888888765543 333 344577777776 67888887 2554444
No 323
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=29.66 E-value=1.4e+02 Score=28.79 Aligned_cols=49 Identities=18% Similarity=0.321 Sum_probs=31.7
Q ss_pred HHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-C-CeEEecCEEEEecChhh
Q 016211 166 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G-KETYSAGAVVLAVGIST 220 (393)
Q Consensus 166 ~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~-g~~~~ad~VI~a~p~~~ 220 (393)
+.+...+++.|++++.++. +.+ +. .++. |.. + ++++.+|+||+|+....
T Consensus 96 ~~~~~~~~~~gv~~~~g~~-~~~--~~--~~~~-v~~~~~~~~~~~d~lViAtGs~p 146 (462)
T PRK06416 96 GGVEGLLKKNKVDIIRGEA-KLV--DP--NTVR-VMTEDGEQTYTAKNIILATGSRP 146 (462)
T ss_pred HHHHHHHHhCCCEEEEEEE-EEc--cC--CEEE-EecCCCcEEEEeCEEEEeCCCCC
Confidence 3455556677999988853 333 22 2343 442 3 46799999999998754
No 324
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=29.21 E-value=1.7e+02 Score=28.44 Aligned_cols=50 Identities=12% Similarity=0.054 Sum_probs=31.2
Q ss_pred HHHHHHcCCeEecCceeeeEEec---CCCCeEEEEEe-CC--eEEecCEEEEecChhh
Q 016211 169 MDSMRTRGCEFLDGRRVTDFIYD---EERCCISDVVC-GK--ETYSAGAVVLAVGIST 220 (393)
Q Consensus 169 ~~~l~~~G~~i~l~~~V~~I~~~---~~~~~v~~v~~-~g--~~~~ad~VI~a~p~~~ 220 (393)
.+.++..|+++..++ ++.|..+ ++.+++. |.+ +| +++.+|++|+|+....
T Consensus 99 ~~~~~~~gv~~~~g~-a~~i~~~~~~~~~~~~~-v~~~~g~~~~~~~d~lViATGs~p 154 (472)
T PRK05976 99 AALLKKGKIDVFHGI-GRILGPSIFSPMPGTVS-VETETGENEMIIPENLLIATGSRP 154 (472)
T ss_pred HHHHHhCCCEEEEEE-EEEeCCCCCcCCceEEE-EEeCCCceEEEEcCEEEEeCCCCC
Confidence 344556688988875 4445433 1112343 544 45 5799999999998753
No 325
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=28.25 E-value=1.5e+02 Score=28.57 Aligned_cols=47 Identities=23% Similarity=0.380 Sum_probs=30.2
Q ss_pred HHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCe--EEecCEEEEecChh
Q 016211 167 PWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKE--TYSAGAVVLAVGIS 219 (393)
Q Consensus 167 ~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~--~~~ad~VI~a~p~~ 219 (393)
.+.+.+++.|++++.++ +..+ +. +++. |.. +|+ ++++|+||+|+...
T Consensus 99 ~~~~~~~~~~v~~~~g~-~~~~--~~--~~~~-v~~~~g~~~~~~~d~lviATGs~ 148 (461)
T PRK05249 99 VRRGQYERNRVDLIQGR-ARFV--DP--HTVE-VECPDGEVETLTADKIVIATGSR 148 (461)
T ss_pred HHHHHHHHCCCEEEEEE-EEEe--cC--CEEE-EEeCCCceEEEEcCEEEEcCCCC
Confidence 34455667788988875 3333 22 3343 444 453 68999999999864
No 326
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=28.16 E-value=1.7e+02 Score=28.45 Aligned_cols=51 Identities=18% Similarity=0.145 Sum_probs=30.4
Q ss_pred HHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeC-CeEEecCEEEEecChhh
Q 016211 168 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 220 (393)
Q Consensus 168 l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~-g~~~~ad~VI~a~p~~~ 220 (393)
+.+.++..|+++..++ +..+..+++...+. |..+ ++++++|+||+|+....
T Consensus 106 ~~~~~~~~~v~~~~g~-~~~~~~~~~~~~v~-v~~~~~~~~~~d~lViATGs~p 157 (475)
T PRK06327 106 IEGLFKKNKITVLKGR-GSFVGKTDAGYEIK-VTGEDETVITAKHVIIATGSEP 157 (475)
T ss_pred HHHHHHhCCCEEEEEE-EEEecCCCCCCEEE-EecCCCeEEEeCEEEEeCCCCC
Confidence 3444556688887665 44444333212232 3222 46899999999999754
No 327
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=26.60 E-value=1.1e+02 Score=30.70 Aligned_cols=56 Identities=27% Similarity=0.409 Sum_probs=40.0
Q ss_pred hHHHHHHHHHH-cCCeEecCceeeeEEecCCCCeEEEEEe----CCe--EEecCEEEEecChhh
Q 016211 164 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 220 (393)
Q Consensus 164 l~~~l~~~l~~-~G~~i~l~~~V~~I~~~~~~~~v~~v~~----~g~--~~~ad~VI~a~p~~~ 220 (393)
+...|.+.+.. .+.+|..+..|.++..+++ +.+.++.. +|+ .+.+++||+|+....
T Consensus 140 ll~~L~~~~~~~~~~~~~~~~~~~~l~~~~~-~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g 202 (562)
T COG1053 140 LLHTLYEQLLKFSGIEIFDEYFVLDLLVDDG-GGVAGVVARDLRTGELYVFRAKAVILATGGAG 202 (562)
T ss_pred HHHHHHHHHHHhhcchhhhhhhhhhheecCC-CcEEEEEEEEecCCcEEEEecCcEEEccCCce
Confidence 44566666655 5568999999999998864 33566554 343 467899999997765
No 328
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=25.68 E-value=78 Score=30.68 Aligned_cols=45 Identities=27% Similarity=0.334 Sum_probs=29.0
Q ss_pred CeEecCceeeeEEec-CCCC--eEEEEEe-CCeEEecCEEEEecChhhHH
Q 016211 177 CEFLDGRRVTDFIYD-EERC--CISDVVC-GKETYSAGAVVLAVGISTLQ 222 (393)
Q Consensus 177 ~~i~l~~~V~~I~~~-~~~~--~v~~v~~-~g~~~~ad~VI~a~p~~~~~ 222 (393)
.+|+-+ .|..|... ++.+ ++.||.+ +|..+.|+.||+++..-.-.
T Consensus 140 L~ire~-~V~dliv~~~~~~~~~~~gV~l~dgt~v~a~~VilTTGTFL~~ 188 (679)
T KOG2311|consen 140 LEIREG-AVADLIVEDPDDGHCVVSGVVLVDGTVVYAESVILTTGTFLRG 188 (679)
T ss_pred chhhhh-hhhheeeccCCCCceEEEEEEEecCcEeccceEEEeeccceee
Confidence 456544 45555543 3211 3667777 78999999999998765433
No 329
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=25.50 E-value=1.9e+02 Score=26.33 Aligned_cols=58 Identities=22% Similarity=0.362 Sum_probs=39.8
Q ss_pred HHHHHHHHHc-CCeEecCceeeeEEecCCCCeEEEEEe-C--C--eEEecCEEEEecChhhHHHHhhc
Q 016211 166 EPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC-G--K--ETYSAGAVVLAVGISTLQELIKN 227 (393)
Q Consensus 166 ~~l~~~l~~~-G~~i~l~~~V~~I~~~~~~~~v~~v~~-~--g--~~~~ad~VI~a~p~~~~~~Ll~~ 227 (393)
+.+.+.+++. +++++++++|.+|.-++ +.+|+. + | +++.+|.|.+++....-..++..
T Consensus 182 ~~~~~~l~~~~~i~~~~~~~i~ei~G~~----v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~ 245 (305)
T COG0492 182 EILVERLKKNVKIEVLTNTVVKEILGDD----VEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKG 245 (305)
T ss_pred HHHHHHHHhcCCeEEEeCCceeEEecCc----cceEEEEecCCceEEEEeceEEEecCCCCchHHHhh
Confidence 4567777776 78999999999998543 334444 2 3 35788999988776554444443
No 330
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=24.32 E-value=45 Score=33.96 Aligned_cols=21 Identities=29% Similarity=0.581 Sum_probs=18.0
Q ss_pred CCCCCCceEEeccccccCCCc
Q 016211 360 GFTSFPNLFMAGDWITTRHGS 380 (393)
Q Consensus 360 ~~~~~~~L~laGd~~~~~~ga 380 (393)
.+|.++|||-||+-+...|||
T Consensus 415 ~~T~i~GLyAaGE~~~g~HGa 435 (640)
T PRK07573 415 LMSTIPGLFVIGEANFSDHGA 435 (640)
T ss_pred CccccCCEEECccccccCCCc
Confidence 458899999999987678988
No 331
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=23.85 E-value=2.1e+02 Score=27.81 Aligned_cols=46 Identities=11% Similarity=0.091 Sum_probs=29.5
Q ss_pred HHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CC--eEEecCEEEEecChhh
Q 016211 169 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK--ETYSAGAVVLAVGIST 220 (393)
Q Consensus 169 ~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g--~~~~ad~VI~a~p~~~ 220 (393)
...+++.|+++..++.+ - .++ .++. |.. +| +++.+|+||+|+....
T Consensus 100 ~~~~~~~gV~~~~g~a~-~--~~~--~~v~-v~~~~g~~~~~~~d~lViATGs~p 148 (471)
T PRK06467 100 AGMAKGRKVTVVNGLGK-F--TGG--NTLE-VTGEDGKTTVIEFDNAIIAAGSRP 148 (471)
T ss_pred HHHHHhCCCEEEEEEEE-E--ccC--CEEE-EecCCCceEEEEcCEEEEeCCCCC
Confidence 34456678998877533 1 223 3343 544 45 4789999999999753
No 332
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=23.35 E-value=53 Score=33.07 Aligned_cols=21 Identities=38% Similarity=0.662 Sum_probs=17.7
Q ss_pred CCCCCCceEEeccccccCCCc
Q 016211 360 GFTSFPNLFMAGDWITTRHGS 380 (393)
Q Consensus 360 ~~~~~~~L~laGd~~~~~~ga 380 (393)
..|++||||-||+-+...|||
T Consensus 364 ~~t~I~GLyAaGE~~~g~hGa 384 (589)
T PRK08641 364 QMTNIPGLFAAGECDYSYHGA 384 (589)
T ss_pred CCeECCCEEECcccccCCCCC
Confidence 458899999999987667876
No 333
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=23.33 E-value=59 Score=31.85 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=17.3
Q ss_pred CCCCCCCceEEeccccc-cCCCc
Q 016211 359 RGFTSFPNLFMAGDWIT-TRHGS 380 (393)
Q Consensus 359 ~~~~~~~~L~laGd~~~-~~~ga 380 (393)
..+|++||||-||+.+. ..||+
T Consensus 341 ~~~t~I~GLyAaGE~a~~g~hGa 363 (488)
T TIGR00551 341 HGRTTVPGLYAIGEVACTGLHGA 363 (488)
T ss_pred CCcccCCCEEECccccccccCcc
Confidence 44588999999999864 57776
No 334
>PRK07395 L-aspartate oxidase; Provisional
Probab=22.03 E-value=64 Score=32.21 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=17.9
Q ss_pred CCCCCCCceEEeccccc-cCCCc
Q 016211 359 RGFTSFPNLFMAGDWIT-TRHGS 380 (393)
Q Consensus 359 ~~~~~~~~L~laGd~~~-~~~ga 380 (393)
..+|++||||-||+-+. ..||+
T Consensus 355 ~~~t~I~GLyAaGE~a~~G~hGa 377 (553)
T PRK07395 355 NNQTSIPGLYAVGETASTGVHGA 377 (553)
T ss_pred CCcccCCCEEECccccccCCCcc
Confidence 34588999999999865 58888
No 335
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=21.82 E-value=63 Score=32.65 Aligned_cols=22 Identities=36% Similarity=0.673 Sum_probs=17.7
Q ss_pred CCCCCCCceEEeccccccCCCc
Q 016211 359 RGFTSFPNLFMAGDWITTRHGS 380 (393)
Q Consensus 359 ~~~~~~~~L~laGd~~~~~~ga 380 (393)
..+|.++|||-||+.....|||
T Consensus 378 ~~~t~i~gL~a~Ge~~~~~hg~ 399 (603)
T TIGR01811 378 DQMTNIPGLFAAGECDFSQHGA 399 (603)
T ss_pred CCcccCCCEEECcccccCcCCC
Confidence 3457899999999976668876
No 336
>PLN02507 glutathione reductase
Probab=21.68 E-value=2.4e+02 Score=27.72 Aligned_cols=45 Identities=16% Similarity=0.228 Sum_probs=28.2
Q ss_pred HHHHHcCCeEecCceeeeEEecCCCCeEEEEEe-CCe--EEecCEEEEecChhh
Q 016211 170 DSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKE--TYSAGAVVLAVGIST 220 (393)
Q Consensus 170 ~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~-~g~--~~~ad~VI~a~p~~~ 220 (393)
+.+...|+++..+ .++.|. . ..+. |.+ +|+ ++.+|+||+|+....
T Consensus 132 ~~l~~~gV~~i~g-~a~~vd--~--~~v~-V~~~~g~~~~~~~d~LIIATGs~p 179 (499)
T PLN02507 132 RLLANAGVKLYEG-EGKIVG--P--NEVE-VTQLDGTKLRYTAKHILIATGSRA 179 (499)
T ss_pred HHHHhCCcEEEEE-EEEEec--C--CEEE-EEeCCCcEEEEEcCEEEEecCCCC
Confidence 3445567887766 444443 2 2343 455 454 589999999999754
No 337
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=20.85 E-value=63 Score=32.17 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=17.3
Q ss_pred CCCCCCCceEEeccccccCCCc
Q 016211 359 RGFTSFPNLFMAGDWITTRHGS 380 (393)
Q Consensus 359 ~~~~~~~~L~laGd~~~~~~ga 380 (393)
..+|+|||||-||+-+...||+
T Consensus 356 ~~~t~IpGLyAaGE~~gg~hG~ 377 (543)
T PRK06263 356 DCETNIPGLFACGEVAGGVHGA 377 (543)
T ss_pred CCcccCCCeEeccccccCCCCC
Confidence 3458999999999987666665
No 338
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=20.47 E-value=72 Score=24.41 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=27.8
Q ss_pred HHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEeCCeEEecCEEEEecChhh
Q 016211 166 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 220 (393)
Q Consensus 166 ~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~a~p~~~ 220 (393)
++|.+...++|.+|. |+..+..| +.-..+..+.-.||.||+|.+...
T Consensus 22 eaLe~~A~~~g~~IK-------VETqGs~G-~eN~LT~edI~~Ad~VI~AaD~~i 68 (122)
T COG1445 22 EALEKAAKKLGVEIK-------VETQGAVG-IENRLTAEDIAAADVVILAADIEV 68 (122)
T ss_pred HHHHHHHHHcCCeEE-------EEcCCccc-ccCcCCHHHHHhCCEEEEEecccc
Confidence 667776777787765 55443211 211111233457999999998876
No 339
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=20.46 E-value=1.7e+02 Score=27.17 Aligned_cols=62 Identities=18% Similarity=0.191 Sum_probs=44.7
Q ss_pred CCchhHhHHHHHHHHHHcCCeEecCceeeeEEecCCCCeEEEEEe---C-C--eEEecCEEEEecChhhH
Q 016211 158 GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC---G-K--ETYSAGAVVLAVGISTL 221 (393)
Q Consensus 158 gG~~~~l~~~l~~~l~~~G~~i~l~~~V~~I~~~~~~~~v~~v~~---~-g--~~~~ad~VI~a~p~~~~ 221 (393)
.|+..-+++.+.+.+++.|.++.-.+-..+|++-++ |+.. |.. + + .+-.+|.|+.|+.-...
T Consensus 234 rGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~-g~l~-v~~k~t~t~~~~~~~ydTVl~AiGR~~~ 301 (503)
T KOG4716|consen 234 RGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDD-GKLR-VFYKNTNTGEEGEEEYDTVLWAIGRKAL 301 (503)
T ss_pred ccccHHHHHHHHHHHHHhCCceeecccceeeeeccC-CcEE-EEeecccccccccchhhhhhhhhccccc
Confidence 555555778888889999999999988999998776 4532 332 1 2 23467999999887654
No 340
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=20.05 E-value=79 Score=20.65 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=13.9
Q ss_pred cccCccHHHHHHHcCCCH
Q 016211 92 KYDSITARELFKQFGCSE 109 (393)
Q Consensus 92 ~~d~~s~~~~l~~~~~~~ 109 (393)
+-|++|..+||+|.|--+
T Consensus 5 ESDnETA~~FL~RvGr~q 22 (60)
T PF06072_consen 5 ESDNETATEFLRRVGRQQ 22 (60)
T ss_pred ccccccHHHHHHHHhHHH
Confidence 458999999999865433
No 341
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=20.02 E-value=2.1e+02 Score=28.83 Aligned_cols=60 Identities=17% Similarity=0.200 Sum_probs=38.6
Q ss_pred HHHHHHHHHH--cCCeEecCceeeeEEecCCCCeEEEEEe--C-CeEEecCE---EEEecChhhHHHH
Q 016211 165 FEPWMDSMRT--RGCEFLDGRRVTDFIYDEERCCISDVVC--G-KETYSAGA---VVLAVGISTLQEL 224 (393)
Q Consensus 165 ~~~l~~~l~~--~G~~i~l~~~V~~I~~~~~~~~v~~v~~--~-g~~~~ad~---VI~a~p~~~~~~L 224 (393)
..+..+.+.. ....|..++.|++|..+..+.++.+|.. + |.+++..+ ||++..+-...+|
T Consensus 255 ~~a~l~~~~~~R~NL~~~~~~~vtrvl~D~~~~~a~gv~~~~~~~~~~~v~a~kEVILSAGAi~SPQL 322 (623)
T KOG1238|consen 255 AKAYLKPIRLTRPNLHISRNAAVTRVLIDPAGKRAKGVEFVRDGGKEHTVKARKEVILSAGAINSPQL 322 (623)
T ss_pred hhhhhhhhhccCccccccccceEEEEEEcCCCceEEEEEEEecCceeeeecccceEEEeccccCCHHH
Confidence 3444444443 2457889999999999855456777765 5 56665555 8886665444444
Done!