Query 016212
Match_columns 393
No_of_seqs 229 out of 1973
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 09:47:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016212.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016212hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.2 5E-06 1.7E-10 66.7 9.4 71 173-243 34-105 (110)
2 2i68_A Protein EMRE; transmemb 98.1 3.7E-06 1.3E-10 70.0 6.5 68 175-242 36-104 (137)
3 2i68_A Protein EMRE; transmemb 97.8 2E-05 7E-10 65.5 5.0 63 326-392 36-99 (137)
4 3b5d_A Multidrug transporter E 97.6 0.00046 1.6E-08 55.1 10.6 61 328-392 38-99 (110)
5 4dve_A Biotin transporter BIOY 4.1 1.6E+03 0.055 18.7 9.9 91 166-258 14-109 (198)
6 1l2w_I Outer membrane virulenc 2.9 3.2E+02 0.011 18.0 0.2 21 343-363 42-62 (69)
7 1u7g_A Probable ammonium trans 2.8 2.8E+03 0.095 19.2 17.0 87 207-298 243-331 (385)
8 4dx5_A Acriflavine resistance 2.6 2.7E+03 0.094 21.9 7.4 28 361-388 908-935 (1057)
9 3hd6_A Ammonium transporter RH 2.4 3.4E+03 0.12 19.4 17.3 92 207-300 267-364 (490)
10 4dx5_A Acriflavine resistance 2.4 3.1E+03 0.11 21.4 7.5 27 362-388 376-402 (1057)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.24 E-value=5e-06 Score=66.68 Aligned_cols=71 Identities=15% Similarity=0.158 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHhhhhccccchhHHHHH-hhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhheeeecCC
Q 016212 173 LPLALVHTLGNLFTNMSLGKVAVSFTHTI-KATEPFFSVLLSAMFLGEFPTLWVVGSLIPIMGGVALASVTE 243 (393)
Q Consensus 173 l~~gl~~~~~~~~~~~al~~~svs~~~ii-~s~~Pift~lls~l~l~ek~~~~~~~sl~l~~~Gv~l~~~~~ 243 (393)
+...+.+.+..++...+++++|++.+..+ .++.|+++++++++++||++++.++++++++++|+.+....+
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 33344567788999999999999999888 899999999999999999999999999999999999876544
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.13 E-value=3.7e-06 Score=70.05 Aligned_cols=68 Identities=16% Similarity=0.163 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhhhhccccchhHHHHH-hhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhheeeecC
Q 016212 175 LALVHTLGNLFTNMSLGKVAVSFTHTI-KATEPFFSVLLSAMFLGEFPTLWVVGSLIPIMGGVALASVT 242 (393)
Q Consensus 175 ~gl~~~~~~~~~~~al~~~svs~~~ii-~s~~Pift~lls~l~l~ek~~~~~~~sl~l~~~Gv~l~~~~ 242 (393)
..+.+++..++.+.+++++|++.+..+ .++.|++++++++++++|++++.++++++++++|+.+....
T Consensus 36 ~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 344567788999999999999999888 99999999999999999999999999999999999987654
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.79 E-value=2e-05 Score=65.54 Aligned_cols=63 Identities=13% Similarity=0.096 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchhHHhHH-HHHHHHHHHHHHHHhcCcccchhhhhhHHHhhhccC
Q 016212 326 RSLIAAICYHAYQQVSYMILQRVSPVTHSVG-NCVKRVVVIVSSVMFFRTPVSAINAFGMITLHSNLH 392 (393)
Q Consensus 326 ~~~~s~v~~~l~~~~~~~~l~~~s~~t~sv~-~~lk~v~~il~s~i~fge~~s~~~~iG~~lil~g~~ 392 (393)
.++..+++++++ ...+++.++.+.... ..+.+++++++|+++|||++|+.+++|++++++|++
T Consensus 36 ~i~~~~ls~~l~----~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ 99 (137)
T 2i68_A 36 TIICYCASFWLL----AQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVL 99 (137)
T ss_dssp HHHHHHHHHHHH----HHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 344566666666 477899888877666 899999999999999999999999999999999986
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.63 E-value=0.00046 Score=55.06 Aligned_cols=61 Identities=13% Similarity=0.110 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHhcccchhHHhHH-HHHHHHHHHHHHHHhcCcccchhhhhhHHHhhhccC
Q 016212 328 LIAAICYHAYQQVSYMILQRVSPVTHSVG-NCVKRVVVIVSSVMFFRTPVSAINAFGMITLHSNLH 392 (393)
Q Consensus 328 ~~s~v~~~l~~~~~~~~l~~~s~~t~sv~-~~lk~v~~il~s~i~fge~~s~~~~iG~~lil~g~~ 392 (393)
+..+++++++ ...+++.+..+.... ..+.++.+.+.|+++|||++|+.+++|+++++.|+.
T Consensus 38 ~~~~~~~~~~----~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~ 99 (110)
T 3b5d_A 38 ICYCASFWLL----AQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVL 99 (110)
T ss_pred HHHHHHHHHH----HHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 3445555555 356777776666555 789999999999999999999999999999999975
No 5
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=4.07 E-value=1.6e+03 Score=18.72 Aligned_cols=91 Identities=9% Similarity=0.059 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHhhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhheeeecCCcc
Q 016212 166 STQLAAILPLALVHTLGNLFTNMSLGKVAVSFTHTIKATEPFFSVLLSAMFLGEFPTLWVVGSLIPIMGGVALASVTEVS 245 (393)
Q Consensus 166 ~~~~~~~l~~gl~~~~~~~~~~~al~~~svs~~~ii~s~~Pift~lls~l~l~ek~~~~~~~sl~l~~~Gv~l~~~~~~~ 245 (393)
.++.+.+...+++-++..++...+ .+|+++.-+=..++.+.+++.+.++..++=.....+=++++.+|.=+...+...
T Consensus 14 ~~k~r~l~~~alfaAliavla~i~--~Ipip~~pVPiTlQtl~V~LaG~~LG~r~G~lsv~lYlllG~~GlPVFagg~gG 91 (198)
T 4dve_A 14 NQKVKTLTYSAFMTAFIIILGFLP--GIPIGFIPVPIILQNMGIMMAGGLLGPKYGTISVGAFLALALIGLPVLTGGNGG 91 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSC--CBCCSSSSCCBCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBTTTBCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhc--cCCCCCCCcCccHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHcCccccCCCCc
Confidence 345566666666665554544432 233333322234677777777777655554555556677778887666544222
Q ss_pred c-----cHHHHHHHHHHH
Q 016212 246 F-----NWAGFWSAMASN 258 (393)
Q Consensus 246 ~-----~~~G~~~~l~s~ 258 (393)
. ...|+++...-+
T Consensus 92 ~~~l~gPTgGYLiGF~~a 109 (198)
T 4dve_A 92 AASFLGPSGGYRIAWLFT 109 (198)
T ss_dssp SGGGGSTTHHHHHHHHHH
T ss_pred hhHHhcchhHHHHHHHHH
Confidence 1 235776665443
No 6
>1l2w_I Outer membrane virulence protein YOPE; chaperone and virulence protein; 2.00A {Yersinia pseudotuberculosis} SCOP: d.198.1.1
Probab=2.90 E-value=3.2e+02 Score=18.05 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=14.9
Q ss_pred HHhcccchhHHhHHHHHHHHH
Q 016212 343 MILQRVSPVTHSVGNCVKRVV 363 (393)
Q Consensus 343 ~~l~~~s~~t~sv~~~lk~v~ 363 (393)
.++.+++.+.+++.+.+++.+
T Consensus 42 riierlssvahsvigfiqrmf 62 (69)
T 1l2w_I 42 RIIERLSSVAHSVIGFIQRMF 62 (69)
T ss_dssp SCEEECSSCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777776654
No 7
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=2.76 E-value=2.8e+03 Score=19.20 Aligned_cols=87 Identities=11% Similarity=0.067 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhCCCCCHHHH-HHHHHHhhhheeeecCCccccHHHHHHHHHHHHHHHHHHH-HHHHhhccccCCCChhhH
Q 016212 207 FFSVLLSAMFLGEFPTLWVV-GSLIPIMGGVALASVTEVSFNWAGFWSAMASNLTNQSRNV-LSKKVMVNKEEALDNITL 284 (393)
Q Consensus 207 ift~lls~l~l~ek~~~~~~-~sl~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~l~~a~~~v-l~k~~~~~~~~~~~~~~l 284 (393)
+..++++++ .++|++.... .+.+.+.+++ ....+.-..+..++..+++.+..-.... +.+| + +.++.+|....
T Consensus 243 l~~~~~~~~-~~gk~~~~~~~nG~lAGLVaI--Ta~~~~v~p~~A~iiG~iag~i~~~~~~~l~~~-l-~iDD~l~a~~v 317 (385)
T 1u7g_A 243 LGWIFGEWA-LRGLPSLLGACSGAIAGLVGV--TPACGYIGVGGALIIGVVAGLAGLWGVTMLKRL-L-RVDDPCDVFGV 317 (385)
T ss_dssp HHHHHHHHH-HHSSCCHHHHHHHHHHHHHHH--TTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHH-H-CSCCGGGHHHH
T ss_pred HHHHHHHHH-HcCCCCHHHHHHHHHHhhhhh--ccCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHh-C-CCCCCCCCEee
Confidence 334444554 4567776553 4444333333 2222222234445555555444333332 3333 2 23445666777
Q ss_pred HHHHHHHHHHHHHH
Q 016212 285 FSIITVMSFILMIP 298 (393)
Q Consensus 285 ~~~~~~~s~l~l~p 298 (393)
-....+.+.+....
T Consensus 318 Hgv~Gi~G~l~~gl 331 (385)
T 1u7g_A 318 HGVCGIVGCIMTGI 331 (385)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHH
Confidence 77777777665433
No 8
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=2.58 E-value=2.7e+03 Score=21.92 Aligned_cols=28 Identities=14% Similarity=0.109 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCcccchhhhhhHHHhh
Q 016212 361 RVVVIVSSVMFFRTPVSAINAFGMITLH 388 (393)
Q Consensus 361 ~v~~il~s~i~fge~~s~~~~iG~~lil 388 (393)
-++..+.+..++|.+++...++|+++++
T Consensus 908 ~~~~~~~~l~~~g~~l~~~~~~g~i~l~ 935 (1057)
T 4dx5_A 908 GVIGALLAATFRGLTNDVYFQVGLLTTI 935 (1057)
T ss_dssp HHHHHHHHHHHHTCCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCccHHHHHHHHHHH
Confidence 3445566777889999999999987754
No 9
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=2.40 E-value=3.4e+03 Score=19.38 Aligned_cols=92 Identities=12% Similarity=0.147 Sum_probs=42.7
Q ss_pred HHHHHHHHHH-hCCCCCHHHHHHHHHHhhhheeeecCCc-cccHHHHHHHHHHHH-HHHHHHH---HHHHhhccccCCCC
Q 016212 207 FFSVLLSAMF-LGEFPTLWVVGSLIPIMGGVALASVTEV-SFNWAGFWSAMASNL-TNQSRNV---LSKKVMVNKEEALD 280 (393)
Q Consensus 207 ift~lls~l~-l~ek~~~~~~~sl~l~~~Gv~l~~~~~~-~~~~~G~~~~l~s~l-~~a~~~v---l~k~~~~~~~~~~~ 280 (393)
+..+++++++ .+.|++......- .+-++|++....+. -..+..++..+++.+ |+..... ..|+.+ +.++.+|
T Consensus 267 lt~~~~s~l~~~~gK~s~~~~~nG-~LAGLVAIT~~a~~~v~P~~AliIG~iaG~i~~~~~~~l~~~l~~kl-~iDD~lg 344 (490)
T 3hd6_A 267 LTSVAISSALHKKGKLDMVHIQNA-TLAGGVAVGTAAEMMLMPYGALIIGFVCGIISTLGFVYLTPFLESRL-HIQDTCG 344 (490)
T ss_dssp HHHHHHHHHTSTTCCCCHHHHHHG-GGHHHHHTTTTTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCTTC
T ss_pred HHHHHHHHHHHhcCCCCHHHhhhc-eeeeEEEEccCcccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHC-CCCcccc
Confidence 3344445544 2456776554322 22233333333332 123434444444433 3322221 223222 2345677
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 016212 281 NITLFSIITVMSFILMIPVT 300 (393)
Q Consensus 281 ~~~l~~~~~~~s~l~l~p~~ 300 (393)
....-....+.+.+....++
T Consensus 345 v~~vHGv~Gi~G~l~~glfa 364 (490)
T 3hd6_A 345 INNLHGIPGIIGGIVGAVTA 364 (490)
T ss_dssp HHHHTHHHHHHHHHHHHHHH
T ss_pred chHHhhHHHHHHHHHHHHHh
Confidence 78887888888776654443
No 10
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=2.36 E-value=3.1e+03 Score=21.44 Aligned_cols=27 Identities=15% Similarity=0.327 Sum_probs=16.8
Q ss_pred HHHHHHHHHhcCcccchhhhhhHHHhh
Q 016212 362 VVVIVSSVMFFRTPVSAINAFGMITLH 388 (393)
Q Consensus 362 v~~il~s~i~fge~~s~~~~iG~~lil 388 (393)
++..+....++|.+++...++|+++.+
T Consensus 376 ~~~~~~~l~~~g~~ln~~sl~gl~~~i 402 (1057)
T 4dx5_A 376 LLGTFAVLAAFGFSINTLTMFGMVLAI 402 (1057)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHe
Confidence 334444555677777777777766554
Done!