Query 016212
Match_columns 393
No_of_seqs 229 out of 1973
Neff 8.2
Searched_HMMs 13730
Date Mon Mar 25 09:47:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016212.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016212hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u7ga_ f.44.1.1 (A:) Ammonium 13.7 3.7E+02 0.027 23.1 19.1 91 202-296 235-327 (383)
2 d2e74g1 f.23.26.1 (G:9-35) Pet 5.4 2.2E+02 0.016 14.3 3.1 18 249-266 3-20 (27)
3 d2r6gf1 e.70.1.1 (F:13-260) Ma 4.3 7.2E+02 0.052 19.6 6.2 53 172-228 5-57 (248)
4 d1uptb_ a.193.1.1 (B:) Golgi a 2.8 2.5E+02 0.019 17.2 1.2 22 209-230 10-31 (58)
5 d1l2wi_ d.198.1.1 (I:) YopE ch 2.0 2.3E+02 0.017 16.6 0.2 18 344-361 38-55 (57)
6 d1pw4a_ f.38.1.1 (A:) Glycerol 1.8 1.5E+03 0.11 17.5 17.5 12 123-134 270-281 (447)
7 d1ffta_ f.24.1.1 (A:) Cytochro 1.7 1.9E+03 0.14 18.6 6.5 47 248-294 140-186 (501)
8 d2axtt1 f.23.34.1 (T:1-30) Pho 1.3 7.9E+02 0.058 12.3 3.5 8 369-376 20-27 (30)
9 d2p7tc1 f.14.1.1 (C:86-119) Po 1.3 8.5E+02 0.062 12.5 2.0 12 225-236 4-15 (34)
10 d1iwga8 f.35.1.1 (A:513-566,A: 1.1 1.9E+03 0.14 15.9 7.5 28 362-389 95-122 (222)
No 1
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=13.67 E-value=3.7e+02 Score=23.06 Aligned_cols=91 Identities=10% Similarity=0.121 Sum_probs=41.6
Q ss_pred hhhhHHHHHHHHHHHhCCCCCHHHH-HHHHHHhhhheeeecCCccccHHHHHHHHHHH-HHHHHHHHHHHHhhccccCCC
Q 016212 202 KATEPFFSVLLSAMFLGEFPTLWVV-GSLIPIMGGVALASVTEVSFNWAGFWSAMASN-LTNQSRNVLSKKVMVNKEEAL 279 (393)
Q Consensus 202 ~s~~Pift~lls~l~l~ek~~~~~~-~sl~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~-l~~a~~~vl~k~~~~~~~~~~ 279 (393)
.+..-.++.++...+.++|.+.... .+.+.+++++ ....+.-..+..++...++. +++-....+.+|. +.++..
T Consensus 235 a~a~~~~~~~~~~~~~~~k~~~~~~~nG~LaGLVai--ta~~~~v~p~~A~~iG~i~g~i~~~~~~~l~~~~--~iDD~~ 310 (383)
T d1u7ga_ 235 ATAAAILGWIFGEWALRGLPSLLGACSGAIAGLVGV--TPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLL--RVDDPC 310 (383)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHH--TTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH--CSCCGG
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHhhhhhhhc--ccCccccchhhHHHHHhhccHHHHHHHHHHHhhc--cccccc
Confidence 3333444444444455677776654 3333333322 22223222333355554444 4444444443332 223445
Q ss_pred ChhhHHHHHHHHHHHHH
Q 016212 280 DNITLFSIITVMSFILM 296 (393)
Q Consensus 280 ~~~~l~~~~~~~s~l~l 296 (393)
|...+-....+.+.+..
T Consensus 311 ~~~~vHg~~Gi~G~l~~ 327 (383)
T d1u7ga_ 311 DVFGVHGVCGIVGCIMT 327 (383)
T ss_dssp GHHHHHHHHHHHHHHHH
T ss_pred ceEeehhhhHHHHHHHH
Confidence 55666666666665543
No 2
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=5.36 E-value=2.2e+02 Score=14.25 Aligned_cols=18 Identities=17% Similarity=0.041 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016212 249 AGFWSAMASNLTNQSRNV 266 (393)
Q Consensus 249 ~G~~~~l~s~l~~a~~~v 266 (393)
.|.+.+-++.+.|+.|.-
T Consensus 3 lgli~~tl~glf~aayqq 20 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHH
Confidence 577888888888888743
No 3
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=4.26 E-value=7.2e+02 Score=19.63 Aligned_cols=53 Identities=15% Similarity=0.064 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHhhhhccccchhHHHHHhhhhHHHHHHHHHHHhCCCCCHHHHHH
Q 016212 172 ILPLALVHTLGNLFTNMSLGKVAVSFTHTIKATEPFFSVLLSAMFLGEFPTLWVVGS 228 (393)
Q Consensus 172 ~l~~gl~~~~~~~~~~~al~~~svs~~~ii~s~~Pift~lls~l~l~ek~~~~~~~s 228 (393)
+..+|++.++..+.....+..-+..+. ...-+.+.++.++++.+|.-+.||+-
T Consensus 5 ~~ll~l~~a~~~~~~~~~~~~~~~~~a----~~~~~~~~~~~~vy~s~r~~p~kyi~ 57 (248)
T d2r6gf1 5 WSVLGLLGLLVGYLVVLMYAQGEYLFA----ITTLILSSAGLYIFANRKAYAWRYVY 57 (248)
T ss_dssp HHHHHHHHHHHHHTHHHHHGGGCHHHH----HHHHHHHHHHHHHHSSSCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHH----HHHHHHHHheEEEEEccCccceehhh
Confidence 455666666555544444444443333 34455677778888888887777754
No 4
>d1uptb_ a.193.1.1 (B:) Golgi autoantigen, golgin-245 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.76 E-value=2.5e+02 Score=17.23 Aligned_cols=22 Identities=27% Similarity=0.169 Sum_probs=15.4
Q ss_pred HHHHHHHHhCCCCCHHHHHHHH
Q 016212 209 SVLLSAMFLGEFPTLWVVGSLI 230 (393)
Q Consensus 209 t~lls~l~l~ek~~~~~~~sl~ 230 (393)
.+++.++..+|..+..+.++.+
T Consensus 10 nvLfeYMmG~E~~tlaKVi~av 31 (58)
T d1uptb_ 10 KVLFEYMMGRETKTMAKVITTV 31 (58)
T ss_dssp HHHHHHHTTSSHHHHHHHHHHH
T ss_pred HHHHHHHcCcchhHHHHHHHHH
Confidence 3567777777877777776654
No 5
>d1l2wi_ d.198.1.1 (I:) YopE chaperone SycE {Yersinia pestis [TaxId: 632]}
Probab=2.02 E-value=2.3e+02 Score=16.59 Aligned_cols=18 Identities=44% Similarity=0.696 Sum_probs=9.8
Q ss_pred HhcccchhHHhHHHHHHH
Q 016212 344 ILQRVSPVTHSVGNCVKR 361 (393)
Q Consensus 344 ~l~~~s~~t~sv~~~lk~ 361 (393)
++.+++.+.+++.+.+++
T Consensus 38 i~e~lss~ahs~i~fi~r 55 (57)
T d1l2wi_ 38 IIERLSSVAHSVIGFIQR 55 (57)
T ss_dssp CEEECSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555555554
No 6
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=1.81 E-value=1.5e+03 Score=17.46 Aligned_cols=12 Identities=8% Similarity=-0.031 Sum_probs=5.0
Q ss_pred HHHHHHHHhcCC
Q 016212 123 NIYNKQVLKVYR 134 (393)
Q Consensus 123 ~~~nK~~l~~f~ 134 (393)
.....++.+..+
T Consensus 270 ~~~~~~~~~~~~ 281 (447)
T d1pw4a_ 270 DWSPTYLKEVKH 281 (447)
T ss_dssp HHHHHHBTTBSC
T ss_pred hhhhhhcccccc
Confidence 334444444444
No 7
>d1ffta_ f.24.1.1 (A:) Cytochrome O ubiquinol oxidase, subunit I {Escherichia coli [TaxId: 562]}
Probab=1.69 E-value=1.9e+03 Score=18.61 Aligned_cols=47 Identities=4% Similarity=-0.055 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCChhhHHHHHHHHHHH
Q 016212 248 WAGFWSAMASNLTNQSRNVLSKKVMVNKEEALDNITLFSIITVMSFI 294 (393)
Q Consensus 248 ~~G~~~~l~s~l~~a~~~vl~k~~~~~~~~~~~~~~l~~~~~~~s~l 294 (393)
..|..+..++.+..+...+.+-..+++++.+.+...+..|..+...+
T Consensus 140 i~gl~l~gissil~~in~i~Ti~~~R~~gm~~~~~PLf~w~~~~t~i 186 (501)
T d1ffta_ 140 IWSLQLSGIGTTLTGINFFVTILKMRAPGMTMFKMPVFTWASLCANV 186 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSCTTCCGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhhccchhheeeeeee
Confidence 45777777788888877666665554433333445566665555443
No 8
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=1.34 E-value=7.9e+02 Score=12.27 Aligned_cols=8 Identities=50% Similarity=1.124 Sum_probs=4.0
Q ss_pred HHhcCccc
Q 016212 369 VMFFRTPV 376 (393)
Q Consensus 369 ~i~fge~~ 376 (393)
.+||.|++
T Consensus 20 aiffrepp 27 (30)
T d2axtt1 20 AIFFREPP 27 (30)
T ss_dssp HHHTSCCC
T ss_pred HHHhcCCC
Confidence 34455554
No 9
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=1.30 E-value=8.5e+02 Score=12.48 Aligned_cols=12 Identities=8% Similarity=0.368 Sum_probs=5.5
Q ss_pred HHHHHHHHhhhh
Q 016212 225 VVGSLIPIMGGV 236 (393)
Q Consensus 225 ~~~sl~l~~~Gv 236 (393)
+..+++..+.|+
T Consensus 4 rcvavvvmvagi 15 (34)
T d2p7tc1 4 RCVAVVVMVAGI 15 (34)
T ss_dssp HHHHHHHHHHHH
T ss_pred eEEEEEEEEecc
Confidence 344444444443
No 10
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=1.14 E-value=1.9e+03 Score=15.91 Aligned_cols=28 Identities=14% Similarity=0.126 Sum_probs=21.5
Q ss_pred HHHHHHHHHhcCcccchhhhhhHHHhhh
Q 016212 362 VVVIVSSVMFFRTPVSAINAFGMITLHS 389 (393)
Q Consensus 362 v~~il~s~i~fge~~s~~~~iG~~lil~ 389 (393)
+...+.+..++|.+++....+|+++.++
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~G 122 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTIG 122 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchhh
Confidence 3455667778899999999998887654
Done!