BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016213
(393 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M841|PEX12_ARATH Peroxisome biogenesis protein 12 OS=Arabidopsis thaliana GN=PEX12
PE=1 SV=2
Length = 393
Score = 619 bits (1596), Expect = e-176, Method: Compositional matrix adjust.
Identities = 301/392 (76%), Positives = 340/392 (86%)
Query: 1 MLFQVGGQGTRPTFFEMAAAQQLPASLRAAVTYSVGVLALRRPFLHKVLDYEDEFFALLM 60
MLFQVGG+GTRPTFFEMAAAQQLPASLRAA+TYS+GV ALRR FLHK+LDYEDEFFA LM
Sbjct: 1 MLFQVGGEGTRPTFFEMAAAQQLPASLRAALTYSLGVFALRRSFLHKILDYEDEFFAALM 60
Query: 61 LILETHSLRNTDASFSESLYGLRRRSVRIRAKKDDTRLKSSDGIHHSGLEKRQRVLSVVF 120
LILE HSLR TD SF+ESLYGLRR+S R+R +KD R SS+ + HSGLEKRQR+LSVVF
Sbjct: 61 LILEGHSLRTTDGSFAESLYGLRRKSARLRLRKDSARKDSSEEVQHSGLEKRQRILSVVF 120
Query: 121 MVVLPYFKSKLHSVYNKEREARLQASLWGPTDERFDDVDYFGGGGNPLFSRGGTDAETSV 180
+VVLPYFKSKLH++YNKEREARL+ SLWG D+ FD+ D+F G + + + E SV
Sbjct: 121 LVVLPYFKSKLHAIYNKEREARLRESLWGAEDQGFDEADFFTGDDSIVSREPSGNEELSV 180
Query: 181 RTSLTKKIQKIIFACYPWLHASCEGLSFTYQLLYLLDATGFYSVGLHALGIHVCRATGQE 240
R L KI+K I CYPW+HAS EGLSFTYQLLYLLDATGFYS+GL ALGI VCRATGQE
Sbjct: 181 RVQLATKIKKFIAVCYPWIHASSEGLSFTYQLLYLLDATGFYSLGLQALGIQVCRATGQE 240
Query: 241 LMDNSSRISKIRSRERERLLGPLWLKKLQGALLSCAYTMLDYAQTGLIAAVFFFKMMEWW 300
LMD SSRISKIR+ ERERL GP WLK +QGALLSC+Y +LDYAQTGLIAAVF FKMMEWW
Sbjct: 241 LMDTSSRISKIRNHERERLRGPPWLKTVQGALLSCSYAVLDYAQTGLIAAVFIFKMMEWW 300
Query: 301 YQSAEERMSAPTVYPPPPPPPPPKVAREGIPLPPDRTICPLCSQKRANPSVVTVSGFVFC 360
YQSAEER+SAPTVYPPPPPPP PK+A+EGIPLPPDR++C LC QKRANPSVVTVSGFVFC
Sbjct: 301 YQSAEERLSAPTVYPPPPPPPAPKMAKEGIPLPPDRSLCALCLQKRANPSVVTVSGFVFC 360
Query: 361 YACIFKYVSQYKRCPVTLMPATVEQIRRLFHD 392
Y+C+FKYVS+YKRCPVTL+PA+V+QIRRLF D
Sbjct: 361 YSCVFKYVSKYKRCPVTLIPASVDQIRRLFQD 392
>sp|O00623|PEX12_HUMAN Peroxisome assembly protein 12 OS=Homo sapiens GN=PEX12 PE=1 SV=1
Length = 359
Score = 153 bits (386), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 118/389 (30%), Positives = 183/389 (47%), Gaps = 59/389 (15%)
Query: 11 RPTFFEMAAAQQLPASLRAAVTYSVGVLALRRPFLHKVL-DYEDEFFALLMLILETHSLR 69
+P+ FE+ A L ++R A+ + V VLA P + L + DE F LL L+L+ H L
Sbjct: 17 QPSIFEVVAQDSLMTAVRPALQHVVKVLAESNPTHYGFLWRWFDEIFTLLDLLLQQHYLS 76
Query: 70 NTDASFSESLYGLRRRSVRIRAKKDDTRLKSSDGIHHSGLEKRQRVLSVVFMVVLPYFKS 129
T ASFSE+ YGL+R + + RL S+ GL K+Q S++F+V+LPY K
Sbjct: 77 RTSASFSENFYGLKR--IVMGDTHKSQRLASA------GLPKQQLWKSIMFLVLLPYLKV 128
Query: 130 KLHSVYNKEREARLQASLWGPTDERFDDVDYFGGGGNPLFSRGGTDAETSVR--TSLTKK 187
KL + + RE + E S+ +S K+
Sbjct: 129 KLEKLVSSLRE----------------------------------EDEYSIHPPSSRWKR 154
Query: 188 IQKIIFACYPWLHASCEGLSFTYQLLYLLDATGFYSVGLHALGIHVCRATGQELMDNSSR 247
+ A YP+++ + EG QL Y+L +S L G+ + R T Q++ +
Sbjct: 155 FYRAFLAAYPFVNMAWEGWFLVQQLRYILGKAQHHSPLLRLAGVQLGRLTVQDIQALEHK 214
Query: 248 ISKIR-----SRERERLLGPLWLKKLQGALLSCAYTMLDYAQTGLIAAVFFFKMMEWWYQ 302
+K +R + K + G LS + TGL VFF + ++WWY
Sbjct: 215 PAKASMMQQPARSVSEKINSALKKAVGGVALSLS--------TGLSVGVFFLQFLDWWYS 266
Query: 303 SA-EERMSAPTVYPPPPPPPPPKVAREGIPLPPDRTICPLCSQKRANPSVVTVSGFVFCY 361
S +E + + T P PPPP + LP +T+CPLC + R N +V+ SG+VFCY
Sbjct: 267 SENQETIKSLTALPTPPPPVHLDYNSDSPLLPKMKTVCPLCRKTRVNDTVLATSGYVFCY 326
Query: 362 ACIFKYVSQYKRCPVTLMPATVEQIRRLF 390
C+F YV ++ CP+T P V+ + +L+
Sbjct: 327 RCVFHYVRSHQACPITGYPTEVQHLIKLY 355
>sp|O88177|PEX12_RAT Peroxisome assembly protein 12 OS=Rattus norvegicus GN=Pex12 PE=2
SV=1
Length = 359
Score = 151 bits (382), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 117/385 (30%), Positives = 181/385 (47%), Gaps = 51/385 (13%)
Query: 11 RPTFFEMAAAQQLPASLRAAVTYSVGVLALRRPFLHKVL-DYEDEFFALLMLILETHSLR 69
+P+ FE+ A L ++R A+ + V VLA P + + DE F LL +L+ H L
Sbjct: 17 QPSIFEVVAQDSLMTAVRPALQHVVKVLAESNPAHYGFFWRWFDEIFTLLDFLLQQHYLS 76
Query: 70 NTDASFSESLYGLRRRSVRIRAKKDDTRLKSSDGIHHSGLEKRQRVLSVVFMVVLPYFKS 129
T ASFSE YGL+R I A + + +GL K S +F+V+LPY K
Sbjct: 77 RTSASFSEHFYGLKR----IVAGSSPQLQRPAS----AGLPKEHLWKSAMFLVLLPYLKV 128
Query: 130 KLHSVYNKEREARLQASLWGPTDERFDDVDYFGGGGNPLFSRGGTDAETSVR--TSLTKK 187
KL + + RE + E S+ +S K+
Sbjct: 129 KLEKLASTLRE----------------------------------EDEYSIHPPSSHWKR 154
Query: 188 IQKIIFACYPWLHASCEGLSFTYQLLYLLDATGFYSVGLHALGIHVCRATGQELMDNSSR 247
++ A YP++ + EG T QL Y+L +S L G+ + R T Q++ R
Sbjct: 155 FYRVFLAAYPFVTMTWEGWFLTQQLRYILGKAEHHSPLLKLAGVRLGRLTAQDIQAMEHR 214
Query: 248 ISKIRS-RERERLLGPLWLKKLQGALLSCAYTMLDYAQTGLIAAVFFFKMMEWWYQSA-E 305
+ + + +E R +G KK++ AL + TGL VFF + ++WWY S +
Sbjct: 215 LVEASAMQEPVRSIG----KKIKSALKKAVGGVALSLSTGLSVGVFFLQFLDWWYSSENQ 270
Query: 306 ERMSAPTVYPPPPPPPPPKVAREGIPLPPDRTICPLCSQKRANPSVVTVSGFVFCYACIF 365
E + + T P PPPP + LP +T+CPLC + R N +V+ SG+VFCY C+F
Sbjct: 271 ETIKSLTALPTPPPPVHLDYNSDSPLLPKMKTVCPLCRKARVNDTVLATSGYVFCYRCVF 330
Query: 366 KYVSQYKRCPVTLMPATVEQIRRLF 390
YV ++ CP+T P V+ + +L+
Sbjct: 331 NYVRSHQACPITGYPTEVQHLIKLY 355
>sp|Q8VC48|PEX12_MOUSE Peroxisome assembly protein 12 OS=Mus musculus GN=Pex12 PE=2 SV=1
Length = 359
Score = 150 bits (380), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 117/385 (30%), Positives = 182/385 (47%), Gaps = 51/385 (13%)
Query: 11 RPTFFEMAAAQQLPASLRAAVTYSVGVLALRRPFLHKVL-DYEDEFFALLMLILETHSLR 69
+P+ FE+ A L ++R A+ + V VLA P + L + DE F LL +L+ H L
Sbjct: 17 QPSIFEVVAQDSLMTAVRPALQHVVKVLAESNPAHYGFLWRWFDEIFTLLDFLLQQHYLS 76
Query: 70 NTDASFSESLYGLRRRSVRIRAKKDDTRLKSSDGIHHSGLEKRQRVLSVVFMVVLPYFKS 129
T ASFSE YGL+R I A + + +GL K S +F+V+LPY K
Sbjct: 77 RTSASFSEHFYGLKR----IVAGSSPHLQRPAS----AGLPKEHLWKSAMFLVLLPYLKV 128
Query: 130 KLHSVYNKEREARLQASLWGPTDERFDDVDYFGGGGNPLFSRGGTDAETSVR--TSLTKK 187
KL + + RE + E S+ +S K+
Sbjct: 129 KLEKLASSLRE----------------------------------EDEYSIHPPSSRWKR 154
Query: 188 IQKIIFACYPWLHASCEGLSFTYQLLYLLDATGFYSVGLHALGIHVCRATGQELMDNSSR 247
+ A YP+++ + EG T QL Y+L +S L G+ + R T Q++ R
Sbjct: 155 FYRAFLAAYPFVNMAWEGWFLTQQLRYILGKAEHHSPLLKLAGVRLARLTAQDMQAIKQR 214
Query: 248 ISKIRS-RERERLLGPLWLKKLQGALLSCAYTMLDYAQTGLIAAVFFFKMMEWWYQSA-E 305
+ + + +E R +G +K++ AL + TGL VFF + ++WWY S +
Sbjct: 215 LVEASAMQEPVRSVG----EKIKSALKKAVGGVALSLSTGLSVGVFFLQFLDWWYSSENQ 270
Query: 306 ERMSAPTVYPPPPPPPPPKVAREGIPLPPDRTICPLCSQKRANPSVVTVSGFVFCYACIF 365
E + + T P PPPP + LP +T+CPLC + R N +V+ SG+VFCY C+F
Sbjct: 271 EAIKSLTALPTPPPPVHLDYNSDSPLLPKMKTVCPLCRKTRVNDTVLATSGYVFCYRCVF 330
Query: 366 KYVSQYKRCPVTLMPATVEQIRRLF 390
YV ++ CP+T P V+ + +L+
Sbjct: 331 NYVRSHQACPITGYPTEVQHLIKLY 355
>sp|A4FUD4|PEX12_BOVIN Peroxisome assembly protein 12 OS=Bos taurus GN=PEX12 PE=2 SV=1
Length = 359
Score = 150 bits (380), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 115/384 (29%), Positives = 185/384 (48%), Gaps = 49/384 (12%)
Query: 11 RPTFFEMAAAQQLPASLRAAVTYSVGVLALRRP-FLHKVLDYEDEFFALLMLILETHSLR 69
+P+ FE+ A L +++R A+ + V VLA P + DE F LL L+L+ H L
Sbjct: 17 QPSIFEVVAQDSLMSAVRPALQHVVKVLAESNPAHFGFFWRWFDEIFTLLDLLLQQHYLS 76
Query: 70 NTDASFSESLYGLRRRSVRIRAKKDDTRLKSSDGIHHSGLEKRQRVLSVVFMVVLPYFKS 129
T ASFSE+ YGL+R + D +L+ + ++GL K+Q + S++F+V+LPY K
Sbjct: 77 KTSASFSENFYGLKRIVM-----GDQHKLQR---LANAGLPKQQFMKSIMFLVLLPYLKV 128
Query: 130 KLHSVYNKEREARLQASLWGPTDERFDDVDYFGGGGNPLFSRGGTDAETSVR--TSLTKK 187
KL + + RE + E S+ +S K+
Sbjct: 129 KLEKLVSSLRE----------------------------------EDEYSIHPPSSRWKR 154
Query: 188 IQKIIFACYPWLHASCEGLSFTYQLLYLLDATGFYSVGLHALGIHVCRATGQELMDNSSR 247
+ A YP+++ + EG QL Y+L +S L G+ + R T Q++ +
Sbjct: 155 FYRAFLAAYPFVNMAWEGWFLVQQLRYILGKAQHHSPLLRLAGVRLGRLTVQDIQALEHK 214
Query: 248 ISKIRSRERERLLGPLWLKKLQGALLSCAYTMLDYAQTGLIAAVFFFKMMEWWYQSA-EE 306
++ + L +K++ AL + TGL VFF + +EWWY S +E
Sbjct: 215 PAEASMMQ---LPAGSIGEKIKSALKKAVGGVALSLSTGLSVGVFFLQFLEWWYSSENQE 271
Query: 307 RMSAPTVYPPPPPPPPPKVAREGIPLPPDRTICPLCSQKRANPSVVTVSGFVFCYACIFK 366
+ + T P PPPP + LP +T+CPLC + R N +V+ SG+VFCY C+F
Sbjct: 272 TIKSLTALPTPPPPVHLDYNSDSPLLPKMKTVCPLCRKNRVNDTVLATSGYVFCYRCVFH 331
Query: 367 YVSQYKRCPVTLMPATVEQIRRLF 390
YV ++ CP+T P V+ + +L+
Sbjct: 332 YVRSHQACPITGYPTEVQHLIKLY 355
>sp|Q9ET67|PEX12_CRILO Peroxisome assembly protein 12 OS=Cricetulus longicaudatus GN=PEX12
PE=2 SV=1
Length = 359
Score = 149 bits (376), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 116/385 (30%), Positives = 182/385 (47%), Gaps = 51/385 (13%)
Query: 11 RPTFFEMAAAQQLPASLRAAVTYSVGVLALRRPFLHKVL-DYEDEFFALLMLILETHSLR 69
+P+ FE+ A L ++R A+ + V VLA P + + DE F LL +L+ H L
Sbjct: 17 QPSIFEVVAQDSLMTAVRPALQHVVKVLAESNPAHYGFFWRWFDEIFTLLDFLLQQHYLS 76
Query: 70 NTDASFSESLYGLRRRSVRIRAKKDDTRLKSSDGIHHSGLEKRQRVLSVVFMVVLPYFKS 129
T ASFSE YGL+R + + + R S+ GL K S +F+V+LPY K
Sbjct: 77 RTSASFSEHFYGLKR--IVAGSSQQPQRPASA------GLPKEHLWKSTMFLVLLPYLKV 128
Query: 130 KLHSVYNKEREARLQASLWGPTDERFDDVDYFGGGGNPLFSRGGTDAETSVR--TSLTKK 187
KL + + RE + E S+ +S K+
Sbjct: 129 KLEKLASSLRE----------------------------------EDEYSIHPPSSHWKR 154
Query: 188 IQKIIFACYPWLHASCEGLSFTYQLLYLLDATGFYSVGLHALGIHVCRATGQELMDNSSR 247
+ A YP+++ + EG T QL Y+L +S L G+ + R T Q++ R
Sbjct: 155 FYRAFLAAYPFVNMAWEGWFLTQQLRYILGKAEHHSPLLKLAGVRLGRLTAQDIQAIEHR 214
Query: 248 ISKIRS-RERERLLGPLWLKKLQGALLSCAYTMLDYAQTGLIAAVFFFKMMEWWYQSA-E 305
+S+ ++ R +G +K++ AL + TGL VFF + ++WWY S +
Sbjct: 215 LSEASVMQDPVRSVG----EKIKLALKKAVGGIALSLSTGLSVGVFFLQFLDWWYSSENQ 270
Query: 306 ERMSAPTVYPPPPPPPPPKVAREGIPLPPDRTICPLCSQKRANPSVVTVSGFVFCYACIF 365
E + + T P PPPP + LP +T+CPLC + R N +V+ SG+VFCY C+F
Sbjct: 271 ETIKSLTALPTPPPPVHLDYNSDSPLLPKMKTVCPLCRKTRVNDTVLATSGYVFCYRCVF 330
Query: 366 KYVSQYKRCPVTLMPATVEQIRRLF 390
YV ++ CP+T P V+ + +L+
Sbjct: 331 NYVRSHQACPITGYPTEVQHLIKLY 355
>sp|Q54N40|PEX12_DICDI Putative peroxisome assembly protein 12 OS=Dictyostelium discoideum
GN=pex12 PE=3 SV=1
Length = 459
Score = 136 bits (342), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 123/206 (59%), Gaps = 5/206 (2%)
Query: 186 KKIQKIIFACYPWLHASCEGLSFTYQLLYLLDATGFYSVGLHALGIHVCRATGQELMDNS 245
KK++ I YP++ A E L F YQLLYL + T +Y+ H I + R +++ +
Sbjct: 257 KKLKTIFLKVYPFISAIYEALFFIYQLLYLYEYTNYYTPFFHFQNIQLKRLNHKDIESHR 316
Query: 246 SRISKIRSRERERLLGPLWLKKLQGALLSCAYTMLDYAQTGLIAAVFFFKMMEWWYQSAE 305
IS R R+R + L+S ++LDY++ L +VF FK +EWWY +E
Sbjct: 317 VVISN-RRRDRINFVRDWPGSSFFVRLVSILDSILDYSKYILPLSVFIFKSLEWWY--SE 373
Query: 306 ERMSAPTVYPPPPPPPPPKVAREGIPLPPDRTICPLCSQKRANPSVVTVSGFVFCYACIF 365
R+SAPT+ P P PP P K A G+ +P D+ +CPLC ++R NP++ SGFVFCY CIF
Sbjct: 374 NRISAPTL-PIPTPPTPSKRAPGGLEIPRDKRLCPLCLKERTNPTICG-SGFVFCYPCIF 431
Query: 366 KYVSQYKRCPVTLMPATVEQIRRLFH 391
YV+++ +CP+T +P EQ+R+++
Sbjct: 432 GYVNEHSKCPITFLPTNTEQLRKIYE 457
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 77/184 (41%), Gaps = 47/184 (25%)
Query: 3 FQVGGQGTRPTFFEMAAAQQLPASLRAAVTYSVGVLALRRPFLHKVLDYEDEFFALLMLI 62
F G RP+FFEM Q+ S + A+ Y VL+ R P +++Y DE F L+L+
Sbjct: 6 FDNGHDPNRPSFFEMLNQHQMMPSFKPALKYIFTVLSQRNPKFRYIVNYYDECFYSLLLL 65
Query: 63 LETHSLRNTDASFSESLYGLRRRSVRIRAKKDD--------------------------- 95
LE H L+ + SFSE+ Y L+R R D
Sbjct: 66 LEYHYLKYYEGSFSENFYNLKRIKPRNNNANGDGDTLFSLLKRLVVTPSNAGQGPETYTK 125
Query: 96 -------------------TRLKSSDGIHHSGLEKRQRVLSVVFMVVLPYFKSKLHSVYN 136
+ ++ D + ++ ++ R S++++V++PYFK KL Y
Sbjct: 126 SQILKKSFAMIRRNRAAASSSQQAKDDL-NTMIQDSDRKESLIYLVLIPYFKGKLDEYYK 184
Query: 137 KERE 140
KE +
Sbjct: 185 KESD 188
>sp|Q19189|PEX12_CAEEL Putative peroxisome assembly protein 12 OS=Caenorhabditis elegans
GN=prx-12 PE=3 SV=1
Length = 359
Score = 135 bits (341), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 98/393 (24%), Positives = 179/393 (45%), Gaps = 69/393 (17%)
Query: 11 RPTFFEMAAAQQLPASLRAAVTYSVGVLALRRP--FLHKVLDYEDEFFALLMLILETHSL 68
+P+ F++ A + L S+R A+ + V LA +P FL ++ DE++ + LIL+ H L
Sbjct: 22 QPSVFDIIAQENLATSIRPALQHLVKYLAFFKPKTFLSVHRNF-DEYYIIFDLILQNHYL 80
Query: 69 RNTDASFSESLYGLRRRSVRIRAKKDDTRLKSSDGIHHSGLEKRQRVLSVVFMVVLPYFK 128
RN ASF+E+ Y ++R + T +DG R+R++S++ +V PY +
Sbjct: 81 RNYGASFTENFYSMKRIA-------SGTGNPPNDG--------RERIMSLITLVGWPYVE 125
Query: 129 SKLHSVYNKEREARLQASLWGPTDERFDDVDYFGGGGNPLFSRGGTDAETSVRTSLTKKI 188
+KL+ +Y++ +E + W + + K
Sbjct: 126 NKLNQLYDRLKEV-YECRSWSSIN------------------------------GMKAKC 154
Query: 189 QKIIFACYPWLHASCEGLSFTYQLLYLLDATGFYSVGLHALGIHVCRATGQEL------- 241
QK+ +P++ + + + QL Y+L+ + +S L+ G+ + T ++L
Sbjct: 155 QKMFVIIWPYIKTALKAVKSALQLAYILNRSSIHSPWLYFSGVILKHLTPEDLEAFNAVP 214
Query: 242 --MDNSSRISK--IRSRERERLLGPLWLKKLQGALLSCAYTMLDYAQTGLIAAVFFFKMM 297
+ +IS+ + R +W + L + Y +FF + +
Sbjct: 215 LHLQTGYQISRGTLNEHIHLRFFNRIW--RFILGLPGIVSRLFAYG-------LFFVQFL 265
Query: 298 EWWYQSAEERMSAPTVYPPPPPPPPPKVAREGIPLPPDRTICPLCSQKRANPSVVTVSGF 357
++ Y + +++ + P PP + E L D CP+C +KR N + + VSG+
Sbjct: 266 DYMYNTDLAKLTKTGLDGAIPSPPHKMIISESEILSLDTNKCPICLKKRVNDTALFVSGY 325
Query: 358 VFCYACIFKYVSQYKRCPVTLMPATVEQIRRLF 390
VFCY CI +YV+ Y +CPVT PA V+ + RLF
Sbjct: 326 VFCYTCINQYVNTYNKCPVTGCPANVQHLIRLF 358
>sp|C8VCP8|PEX12_EMENI Peroxisome assembly protein 12 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=PEX12
PE=3 SV=1
Length = 489
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 113/436 (25%), Positives = 175/436 (40%), Gaps = 94/436 (21%)
Query: 11 RPTFFEMAAAQQLPASLRAAVTYSVGVLALRRP-FLHKVLDYEDEFFALLMLILETHSLR 69
+P+ FE+ A QQL L ++ Y + V R P +L +VL+ DE +ALL L++E + LR
Sbjct: 15 KPSLFELLAEQQLSDLLPPSIRYILAVATHRHPRYLLRVLNSFDEVYALLSLVVERYYLR 74
Query: 70 NTDASFSESLYGLRRRSVRIRAKKDDTRLK-SSDGIHHSGLEKRQRVL--SVVFMVVLPY 126
N SF+E+ Y L+R V + + R + + G L+ R + +++ MV +PY
Sbjct: 75 NFGGSFTENFYSLKRERVLLTKNGEIPRAQLGAPGPVRESLKLRNSDVWKNLLVMVGIPY 134
Query: 127 FKSKLHSVYNKEREARLQASLWGPTDERFDDVDYFGGGGNPLFSRGGTDAETSVRTSLTK 186
K KL Y+ A QASL R++ D ++R
Sbjct: 135 LKRKLDEGYDI--HAAPQASLIMNGGPRYNPSD-------------DLPPHPTIRQRFMH 179
Query: 187 KIQKIIFACYPWLHASCEGLSFTYQLLYLLDATGFYSVGLHALGIHVCRATGQELMDNSS 246
+ + YP +A+ + L YL D T + S L +G + R + +
Sbjct: 180 AYKWFLRNVYPSFNAAYYFSILAFNLAYLFDNTKYSSPFLWLIGTRIRRLSSAD----HQ 235
Query: 247 RISKI-------------RSRERERLLGPLWLKKLQGALLSCAYTMLDYAQTGLIAAVFF 293
I+KI RSR LLG L LL T L Y L A++F
Sbjct: 236 AIAKILEGKPQTPNSRSARSRPGSGLLGLFSPHNLYPQLL----TSLRYF---LPASIFA 288
Query: 294 FKMMEWWYQSAEER-------------------MSAPTVYPPPPP------PPPPKVARE 328
K +EWW+ S R M +P+ PP P PK A +
Sbjct: 289 LKFLEWWHASDFSRQLARKATDTLDIPAPITKGMISPSERKSRPPTKQKEDPESPKSALK 348
Query: 329 ---------------------GIPLPPDR----TICPLCSQKRANPSVVTVSGFVFCYAC 363
+PLPP + CP+C + NP+ +G+V+CY C
Sbjct: 349 TSSPHKRIQPPISASSYLPIFTVPLPPADSDAASSCPVCLNQLTNPTACQ-TGYVYCYVC 407
Query: 364 IFKYVSQYKRCPVTLM 379
IF +++ + + M
Sbjct: 408 IFHWLNGEHQRQIDFM 423
>sp|Q01961|PEX12_PICPA Peroxisome assembly protein 12 OS=Komagataella pastoris GN=PEX12
PE=3 SV=1
Length = 409
Score = 92.0 bits (227), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 98/404 (24%), Positives = 164/404 (40%), Gaps = 75/404 (18%)
Query: 12 PTFFEMAAAQQLPASLRAAVTYSVGVLALRRP-FLHKVLDYEDEFFALLMLILETHSLRN 70
PT FE+ +AQ+L L ++ Y + R P +L KV ++ DE + +E L +
Sbjct: 17 PTLFEIISAQELEKLLTPSIRYILVHYTQRYPRYLLKVANHFDELNLAIRGFIEFRQLSH 76
Query: 71 TDASFSESLYGLRRRSVRIRAKKDDTRLKSSDGI---HHSGLEKRQRVLSVVFMVVLPYF 127
+++F + YGL++ VR RL+S L K Q +S+ +V +PY
Sbjct: 77 WNSTFIDKFYGLKK--VRNHQTISTERLQSQVPTLLEQRRRLSKTQIAVSLFEIVGVPYL 134
Query: 128 KSKLHSVYNKEREARLQASLWGPTDERFDDVDYFGGGGNPLFSRGGTDAETSVRTSLTKK 187
+ KL +Y+K P D + S++T
Sbjct: 135 RDKLDHLYDKLY---------------------------PKLMMNNLDPKESLKTF---- 163
Query: 188 IQKIIFACYPWLHASCEGLSFTYQLLYLLDATGFYSVGLHALGIHVCRATGQELMDNSSR 247
+Q YP L + + Q+LYL S+ + + R + + R
Sbjct: 164 VQYYFLKLYPILLSVLTTIQVLLQVLYLSGTFKSPSIIMWLFKMKYARLNSYDYTLDEQR 223
Query: 248 ISKIRSRERERLLG-------PLWLKKLQGALLS-----CAYTMLDYAQTGLIAAVFFFK 295
++K ++ LG P+ L + L S +L T A++F K
Sbjct: 224 VNKFLNKTSPGKLGTGNNRIRPITLTESLYLLYSDLTRPLKKGLLITGGTLFPASIFLLK 283
Query: 296 MMEWWYQSA-EERMSAP-TVYPPPPPPPPPKVAREGIPLPPDRTI-------------CP 340
+EWW S +M+ P + PPP ++++ L DR I CP
Sbjct: 284 FLEWWNSSDFATKMNKPRNPFSDSELPPPINLSKD---LLADRKIKKLLKKSQSNDGTCP 340
Query: 341 LCSQKRANPSVVTVSGFVFCYACIFKYVSQYK-------RCPVT 377
LC ++ NP+V+ +G+VFCY CIFK+++ + RCP+T
Sbjct: 341 LCHKQITNPAVIE-TGYVFCYTCIFKHLTSSELDEETGGRCPIT 383
>sp|Q9VPT5|PEX12_DROME Putative peroxisome assembly protein 12 OS=Drosophila melanogaster
GN=pex12 PE=2 SV=1
Length = 297
Score = 69.3 bits (168), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Query: 292 FFFKMMEWWYQSAEERMSAPTVYPPPPPPPP--PKVAREGIPLPPDRTICPLCSQKRANP 349
FF + ++WWY + + R T+ P P PK ++ +P R CP+C P
Sbjct: 198 FFLQFVQWWYSNDQRRKVGGTLINPEAMPRKQLPKEVQQSLP---QRGECPVCLLSIQTP 254
Query: 350 SVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRRLFH 391
+ +VSG+VFC+ CI ++ ++ CPVT P +++ + R++
Sbjct: 255 TACSVSGYVFCWKCIVSHMKEHGTCPVTHYPISLDDLVRIYE 296
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 17/123 (13%)
Query: 12 PTFFEMAAAQQLPASLRAAVTYSVGVLALRRPF-LHKVLDYEDEFFALLMLILETHSLRN 70
P+ FE++A++ L + A++ LR F L L ++E LL +L+ LR
Sbjct: 15 PSIFEISASETLDNLIYPALSKIFDYFGLRLDFKLWGSLRIQEELSPLLTWLLQYLYLRK 74
Query: 71 TDASFSESLYGLRRRSVRIRAKKDDTRLKSSDGIHHSGLEKRQRVLSVVFMVVLPYFKSK 130
+SF ES YGL+R T + D L +RQ+ S + +PY + K
Sbjct: 75 RASSFGESFYGLQR-----------TVTTTGD-----LLNRRQQFASATLLTFMPYVERK 118
Query: 131 LHS 133
L +
Sbjct: 119 LRT 121
>sp|Q04370|PEX12_YEAST Peroxisome assembly protein 12 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PEX12 PE=1 SV=1
Length = 399
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 91/400 (22%), Positives = 152/400 (38%), Gaps = 79/400 (19%)
Query: 5 VGGQGTRPTFFEMAAAQQLPASLRAAVTYSVG---VLALRRPFLHKVLDYEDEFFALLML 61
VG + PT FE+ ++Q++ + L A++ Y + V + ++ Y E+F +
Sbjct: 25 VGLEPLYPTIFEIMSSQEIDSLLPASIRYLLANHLVANFPNRYTLRLNKYFFEWFQAIKG 84
Query: 62 ILETHSLRNTDASFSESLYGLRRRSVRIRAKKDDTRLKSSDGIHH--SGLEKRQRVLSVV 119
+E + L+ +++F + YGL+ S R R T+ + G GL+ Q+ SV+
Sbjct: 85 FVEWYHLKTYNSTFIDRFYGLQLFSSRDR-NLALTQCLNPKGQSEWPQGLQLNQQQKSVI 143
Query: 120 FM--VVLPYFKSKLHSVYNKEREARLQASLWGPTDERFDDVDYFGGGGNPLFSRGGTDAE 177
F+ ++LPY +KL DE + + N +FS T+ +
Sbjct: 144 FLEKIILPYITAKL--------------------DEILEKISM-----NNIFSSDETENK 178
Query: 178 TSVRTSLTKKIQKIIFACYPWLHASCEGLSFTYQLLYLLDATGFYSVGLHALGIH--VCR 235
R L YP++ + +LL+L TG S+ + I R
Sbjct: 179 WPKRAFL---------RIYPFIKKLLALSNLLVKLLFLTKRTGSVSLLQYLFKIEYTTVR 229
Query: 236 ATGQEL--------MDNSSRISKIRSRERERLLGPLWLKKLQGALLSCAYTMLDYAQTGL 287
EL MDN R + I S + L LS L + +
Sbjct: 230 PLSSELSGLKETKGMDNRLRKTNISS-----------IFALMQGQLSIIPRFLTFMGSQF 278
Query: 288 IAA-VFFFKMMEWW--------YQSAEERMSAPTVYPPPPPPPPPKVAREGIPLPPDRTI 338
+F ++ +WW Q + PP +EG+
Sbjct: 279 FPTFIFVLRVYQWWTTQDMTTKLQKRVNDLDEDIPRPPFSSHSDKTEDKEGV-----SEA 333
Query: 339 CPLCSQKRANPSVVTVSGFVFCYACIFKY-VSQYKRCPVT 377
CP+C + NP V+ +G+V CY C Y V+ CPVT
Sbjct: 334 CPVCEKTVQNPCVLE-TGYVACYPCAISYLVNNEGHCPVT 372
>sp|Q8TFH8|PEX12_SCHPO Peroxisome assembly protein 12 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=pex12 PE=3 SV=2
Length = 343
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 85/381 (22%), Positives = 157/381 (41%), Gaps = 72/381 (18%)
Query: 12 PTFFEMAAAQQLPASLRAAVTYSVGVLALRRP-FLHKVLDYEDEFFALLMLILETHSLRN 70
P+ E+ QQ+ + ++ + + R P FL + + D + L+ L+LE L+
Sbjct: 4 PSLLEVLQVQQVEKLISPSLRFILAYFTHRYPRFLLRAYNSFDGIYLLVKLLLEKSQLKK 63
Query: 71 TDASFSESLYGLRRRSVRIRAKKDDTRL------KSSDGIHHSGLEKRQRVLSVVFMV-V 123
+A+ E + L+R + A +D + + +S +G++ VL +F+
Sbjct: 64 WNATSVERRFQLKR----VIAVRDSSIIAEEFPQESESATSLNGID----VLKKLFLTYC 115
Query: 124 LPYFKSKLHSVYN-KEREARLQASLWGPTDERFDDVDYFGGGGNPLFSRGGTDAETSVRT 182
+PY K S+ KE + D++ + F L R
Sbjct: 116 IPYLLEKCESLTTVKENHTAVSILSLQARDKQKGALSVFYSKIKILLVR----------- 164
Query: 183 SLTKKIQKIIFACYPWLHASCEGLSFTYQLLYLLDATGFYSVGLHALGIHVCRATGQELM 242
++KI+ + + S L + Y LLY L T + + L H+ R +
Sbjct: 165 -----LKKILHFVFRLIRKSNTYLQWLYYLLYALGKTPYTN-----LADHILRQRVIYNV 214
Query: 243 DNSSRISKIRSRERERLLGPLWLKKLQGALLSCAYTMLDYAQTGLIAAVFFFKMMEWW-- 300
+N I +RE+ LL ++ D++ G + + ++++WW
Sbjct: 215 ENIHSRKLISTREKSSLLT----------------SIADHSMEGFLIII---QLIDWWQS 255
Query: 301 --YQSAEERMS-APTVYPPPPPPPPPKVAREGIPLPPDRTICPLCSQKRANPSVVTVSGF 357
Y+S ++ A T PP P V+ I C +C +K NP+V++ +GF
Sbjct: 256 NNYESHLKKGEVAFTELAPPKLPFEINVSTTDI--------CKICGEKIKNPAVLS-TGF 306
Query: 358 VFCYACIFKYVSQYK-RCPVT 377
VFCY CI ++ ++ +CPVT
Sbjct: 307 VFCYPCIQVWLQRHPFKCPVT 327
>sp|Q9SYU4|PEX10_ARATH Peroxisome biogenesis factor 10 OS=Arabidopsis thaliana GN=PEX10
PE=1 SV=1
Length = 381
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 339 CPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRRLFH 391
C LC R +P+ T G VFC++CI ++ ++ + CP+ P T + L+H
Sbjct: 327 CTLCLSTRQHPTA-TPCGHVFCWSCIMEWCNEKQECPLCRTPNTHSSLVCLYH 378
>sp|Q8BH75|RNF41_MOUSE E3 ubiquitin-protein ligase NRDP1 OS=Mus musculus GN=Rnf41 PE=1
SV=1
Length = 317
Score = 39.7 bits (91), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 338 ICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIR---RLFHDM 393
ICP+CS P FC ACI ++ SQ + CPV TV +R R+ +M
Sbjct: 17 ICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTVAHLRPVPRIMRNM 75
>sp|Q5R7T5|RNF41_PONAB E3 ubiquitin-protein ligase NRDP1 OS=Pongo abelii GN=RNF41 PE=2
SV=1
Length = 317
Score = 39.7 bits (91), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 338 ICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIR---RLFHDM 393
ICP+CS P FC ACI ++ SQ + CPV TV +R R+ +M
Sbjct: 17 ICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTVAHLRPVPRIMRNM 75
>sp|Q9H4P4|RNF41_HUMAN E3 ubiquitin-protein ligase NRDP1 OS=Homo sapiens GN=RNF41 PE=1
SV=2
Length = 317
Score = 39.7 bits (91), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 338 ICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIR---RLFHDM 393
ICP+CS P FC ACI ++ SQ + CPV TV +R R+ +M
Sbjct: 17 ICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTVAHLRPVPRIMRNM 75
>sp|Q5FWL3|RNF41_XENLA E3 ubiquitin-protein ligase NRDP1 OS=Xenopus laevis GN=rnf41 PE=2
SV=1
Length = 317
Score = 39.7 bits (91), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 338 ICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIR---RLFHDM 393
ICP+CS P FC ACI ++ SQ + CPV TV +R R+ +M
Sbjct: 17 ICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTVAHLRPVPRIMRNM 75
>sp|O22785|PR19B_ARATH Pre-mRNA-processing factor 19 homolog 2 OS=Arabidopsis thaliana
GN=PRP19B PE=1 SV=3
Length = 525
Score = 38.5 bits (88), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 339 CPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQI 386
C + + P V T SG +F I +++S Y +CPVT P T++ I
Sbjct: 3 CAISGEVPVEPVVSTKSGLLFERRLIERHISDYGKCPVTGEPLTIDDI 50
>sp|P84445|ICP0_EHV1V E3 ubiquitin-protein ligase ICP0 OS=Equine herpesvirus 1 (strain
V592) GN=ICP0 PE=3 SV=1
Length = 532
Score = 37.7 bits (86), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 339 CPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMP 380
CP+C + +N S+ FCY CI +++ Q CP+ +P
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVP 49
>sp|P28990|ICP0_EHV1B E3 ubiquitin-protein ligase ICP0 OS=Equine herpesvirus 1 (strain
Ab4p) GN=63 PE=1 SV=1
Length = 532
Score = 37.7 bits (86), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 339 CPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMP 380
CP+C + +N S+ FCY CI +++ Q CP+ +P
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVP 49
>sp|Q54S31|PEX10_DICDI Peroxisome biogenesis factor 10 OS=Dictyostelium discoideum
GN=pex10 PE=3 SV=2
Length = 374
Score = 36.6 bits (83), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 339 CPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATV 383
C LC + R + + T+ G +FC+ CI ++ + ++CPV P ++
Sbjct: 322 CTLCLEVRTH-TTATICGHLFCWHCITEWCNNKEQCPVCRCPISI 365
>sp|Q6ZMN7|PZRN4_HUMAN PDZ domain-containing RING finger protein 4 OS=Homo sapiens
GN=PDZRN4 PE=1 SV=3
Length = 1036
Score = 36.6 bits (83), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 339 CPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRRLF 390
C LC Q P + T G VFC +C+ + + +RCP+ P ++ R+
Sbjct: 18 CKLCGQVLEEP-LCTPCGHVFCASCLLPWAVRRRRCPLQCQPLAPGELYRVL 68
>sp|Q6CTZ8|RAD18_KLULA Postreplication repair E3 ubiquitin-protein ligase RAD18
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=RAD18
PE=3 SV=1
Length = 427
Score = 36.2 bits (82), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 350 SVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRRLF 390
SV+T G FC CI KY+ + +CP+ L T +++ F
Sbjct: 42 SVLTPCGHSFCSICIRKYLQKESKCPLCLSDLTESMLQKEF 82
>sp|Q9P3U8|YJ95_SCHPO Uncharacterized RING finger protein C548.05c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC548.05c PE=4 SV=1
Length = 468
Score = 36.2 bits (82), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 339 CPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPV 376
CP+C++ P T G +CY C+ ++ + K CP
Sbjct: 85 CPICTEALQRP-FTTHCGHTYCYECLLNWLKESKSCPT 121
>sp|O60683|PEX10_HUMAN Peroxisome biogenesis factor 10 OS=Homo sapiens GN=PEX10 PE=1 SV=1
Length = 326
Score = 35.8 bits (81), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 338 ICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPV 376
+C LC ++R +P+ T G +FC+ CI + S CP+
Sbjct: 272 LCTLCLEERRHPTA-TPCGHLFCWECITAWCSSKAECPL 309
>sp|Q7ZW16|RNF41_DANRE E3 ubiquitin-protein ligase NRDP1 OS=Danio rerio GN=rnf41 PE=2 SV=1
Length = 318
Score = 35.8 bits (81), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 338 ICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIR---RLFHDM 393
+CP+CS P FC ACI ++ +Q + CPV T+ +R R+ +M
Sbjct: 17 LCPICSGVLEEPVRAPHCEHAFCNACITQWFAQQQICPVDRTVVTLAHLRPVPRIMRNM 75
>sp|Q8HXW8|PEX10_MACFA Peroxisome biogenesis factor 10 OS=Macaca fascicularis GN=PEX10
PE=2 SV=1
Length = 326
Score = 35.8 bits (81), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 338 ICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPV 376
+C LC ++R +P+ T G +FC+ CI + S CP+
Sbjct: 272 LCTLCLEERRHPTA-TPCGHLFCWECITAWCSSKAECPL 309
>sp|Q75EN0|RAD18_ASHGO Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=RAD18 PE=3 SV=1
Length = 443
Score = 35.8 bits (81), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 339 CPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRRLF 390
C +C P V+T G FC CI +Y+++ RCP+ L +++ F
Sbjct: 32 CHICKDMLQTP-VLTQCGHTFCSLCIREYLNKESRCPLCLAELRQNMLQKEF 82
>sp|Q6NZ21|RNFT1_DANRE RING finger and transmembrane domain-containing protein 1 OS=Danio
rerio GN=rnft1 PE=2 SV=2
Length = 419
Score = 35.8 bits (81), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 319 PPPPPKVAREGIPLPPDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPV 376
P P ++ G ICP+C P V+ V +FC CI ++++Q + CP+
Sbjct: 346 PASPAQIREAG-------DICPICQADFKQPRVL-VCQHIFCEECIAQWLNQERTCPL 395
>sp|Q8LE94|RING3_ARATH E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana
GN=At3g02290 PE=2 SV=1
Length = 231
Score = 35.4 bits (80), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 332 LPPDRTICPLCSQK--RANPSVVTVSGFVFCYACIFKYVSQYKRCPV 376
L D +CP C ++ NP +VT F +CI++++ + + CPV
Sbjct: 174 LSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCPV 220
>sp|Q9BUZ4|TRAF4_HUMAN TNF receptor-associated factor 4 OS=Homo sapiens GN=TRAF4 PE=1 SV=1
Length = 470
Score = 35.4 bits (80), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 333 PPDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQ-YKRCPVTLMPATVEQI 386
P R +CPLC + P V+ G FC C+ +++S+ +CP +P +I
Sbjct: 12 PKRRLLCPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFKCPEDQLPLDYAKI 66
>sp|Q61382|TRAF4_MOUSE TNF receptor-associated factor 4 OS=Mus musculus GN=Traf4 PE=1 SV=2
Length = 470
Score = 35.0 bits (79), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 333 PPDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQ-YKRCPVTLMPATVEQI 386
P R +CPLC + P V+ G FC C+ +++S+ +CP +P +I
Sbjct: 12 PKRRLLCPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFKCPEDQLPLDYAKI 66
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 149,547,044
Number of Sequences: 539616
Number of extensions: 6465760
Number of successful extensions: 65393
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 180
Number of HSP's that attempted gapping in prelim test: 55650
Number of HSP's gapped (non-prelim): 6648
length of query: 393
length of database: 191,569,459
effective HSP length: 119
effective length of query: 274
effective length of database: 127,355,155
effective search space: 34895312470
effective search space used: 34895312470
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)