Query 016213
Match_columns 393
No_of_seqs 170 out of 658
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 09:48:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016213.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016213hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bay_A PRE-mRNA splicing facto 99.4 1.2E-13 4E-18 103.6 4.4 57 336-392 3-59 (61)
2 3ng2_A RNF4, snurf, ring finge 99.4 1E-13 3.6E-18 105.6 3.3 57 334-391 8-71 (71)
3 2kr4_A Ubiquitin conjugation f 99.4 4.1E-13 1.4E-17 107.1 6.4 54 335-389 13-66 (85)
4 2xeu_A Ring finger protein 4; 99.4 2.1E-13 7.2E-18 101.5 3.6 56 335-391 2-64 (64)
5 1t1h_A Gspef-atpub14, armadill 99.4 5.5E-13 1.9E-17 103.7 6.1 53 335-388 7-60 (78)
6 2djb_A Polycomb group ring fin 99.3 1.2E-12 4.1E-17 100.5 5.6 55 335-389 14-68 (72)
7 2kre_A Ubiquitin conjugation f 99.3 8.3E-13 2.8E-17 108.6 5.0 54 335-389 28-81 (100)
8 2d8t_A Dactylidin, ring finger 99.3 9.1E-13 3.1E-17 100.9 3.8 54 335-389 14-67 (71)
9 1wgm_A Ubiquitin conjugation f 99.3 2.4E-12 8.3E-17 105.4 6.4 54 335-389 21-75 (98)
10 2ecy_A TNF receptor-associated 99.3 1.9E-12 6.5E-17 97.6 4.4 51 335-386 14-65 (66)
11 2ysl_A Tripartite motif-contai 99.3 4.3E-12 1.5E-16 97.2 6.4 53 334-387 18-73 (73)
12 1g25_A CDK-activating kinase a 99.2 5.9E-12 2E-16 94.6 4.5 58 335-392 2-64 (65)
13 2ct2_A Tripartite motif protei 99.2 7.9E-12 2.7E-16 98.9 5.5 56 334-390 13-75 (88)
14 2ecw_A Tripartite motif-contai 99.2 1.7E-11 5.9E-16 95.9 7.3 55 335-390 18-78 (85)
15 2csy_A Zinc finger protein 183 99.2 1.2E-11 4.2E-16 96.9 6.3 47 335-382 14-60 (81)
16 3lrq_A E3 ubiquitin-protein li 99.2 6.6E-12 2.3E-16 102.7 4.8 56 335-390 21-77 (100)
17 2ecv_A Tripartite motif-contai 99.2 2.2E-11 7.7E-16 95.3 6.5 55 335-390 18-78 (85)
18 2y43_A E3 ubiquitin-protein li 99.2 1.1E-11 3.7E-16 100.9 4.8 54 335-388 21-74 (99)
19 2yur_A Retinoblastoma-binding 99.2 1.3E-11 4.4E-16 95.3 4.8 48 335-382 14-63 (74)
20 2egp_A Tripartite motif-contai 99.2 4.8E-12 1.6E-16 98.3 2.0 54 335-389 11-71 (79)
21 3ztg_A E3 ubiquitin-protein li 99.2 2.1E-11 7.1E-16 97.7 5.6 54 334-387 11-67 (92)
22 1chc_A Equine herpes virus-1 r 99.2 2.8E-11 9.7E-16 91.3 6.0 48 335-382 4-51 (68)
23 2ea6_A Ring finger protein 4; 99.2 1.5E-11 5.3E-16 92.6 4.4 48 335-383 14-68 (69)
24 2f42_A STIP1 homology and U-bo 99.2 1.6E-11 5.5E-16 111.0 4.4 54 335-389 105-159 (179)
25 2yu4_A E3 SUMO-protein ligase 99.2 1.7E-11 5.9E-16 99.3 4.1 54 335-388 6-68 (94)
26 2c2l_A CHIP, carboxy terminus 99.1 1.8E-11 6E-16 116.2 4.8 53 335-388 207-260 (281)
27 2ckl_A Polycomb group ring fin 99.1 2.6E-11 8.8E-16 100.2 4.7 50 335-384 14-63 (108)
28 4ayc_A E3 ubiquitin-protein li 99.1 1.8E-11 6.2E-16 105.7 3.9 47 336-383 53-99 (138)
29 2ect_A Ring finger protein 126 99.1 3.2E-11 1.1E-15 93.6 4.8 53 335-388 14-69 (78)
30 4ap4_A E3 ubiquitin ligase RNF 99.1 2.2E-11 7.6E-16 103.0 4.0 57 335-392 6-69 (133)
31 1jm7_A BRCA1, breast cancer ty 99.1 3.6E-11 1.2E-15 99.4 5.1 53 336-389 21-76 (112)
32 2ysj_A Tripartite motif-contai 99.1 4.9E-11 1.7E-15 88.8 5.3 43 334-377 18-63 (63)
33 2ecn_A Ring finger protein 141 99.1 1.7E-11 5.9E-16 93.2 2.8 56 334-391 13-68 (70)
34 1iym_A EL5; ring-H2 finger, ub 99.1 4.2E-11 1.4E-15 86.6 4.5 48 335-382 4-54 (55)
35 2ecm_A Ring finger and CHY zin 99.1 5.2E-11 1.8E-15 86.0 4.6 47 335-382 4-54 (55)
36 3hct_A TNF receptor-associated 99.1 3.6E-11 1.2E-15 101.1 4.0 54 334-388 16-70 (118)
37 3fl2_A E3 ubiquitin-protein li 99.1 5.1E-11 1.8E-15 100.8 4.6 51 335-386 51-103 (124)
38 2vje_A E3 ubiquitin-protein li 99.1 6.6E-11 2.3E-15 89.2 4.5 54 335-391 7-63 (64)
39 2ecj_A Tripartite motif-contai 99.1 9.8E-11 3.3E-15 85.4 5.3 43 334-377 13-58 (58)
40 2kiz_A E3 ubiquitin-protein li 99.1 2E-10 6.7E-15 87.0 6.0 48 335-383 13-63 (69)
41 4ap4_A E3 ubiquitin ligase RNF 99.0 6.2E-11 2.1E-15 100.2 3.3 56 335-391 71-133 (133)
42 2ep4_A Ring finger protein 24; 99.0 1.7E-10 6E-15 88.5 5.5 47 335-382 14-63 (74)
43 2ckl_B Ubiquitin ligase protei 99.0 1E-10 3.5E-15 103.8 4.7 48 336-383 54-102 (165)
44 1x4j_A Ring finger protein 38; 99.0 6.3E-11 2.2E-15 91.4 2.9 49 335-384 22-73 (75)
45 2vje_B MDM4 protein; proto-onc 99.0 1E-10 3.5E-15 87.8 3.8 54 335-391 6-62 (63)
46 1z6u_A NP95-like ring finger p 99.0 1.2E-10 4.1E-15 102.3 4.7 49 335-384 77-126 (150)
47 1rmd_A RAG1; V(D)J recombinati 99.0 1.2E-10 4E-15 97.4 4.4 54 335-389 22-76 (116)
48 2ecl_A Ring-box protein 2; RNF 99.0 2E-10 6.9E-15 90.4 4.1 53 335-387 14-80 (81)
49 2l0b_A E3 ubiquitin-protein li 99.0 1.6E-10 5.5E-15 92.8 3.3 47 335-382 39-88 (91)
50 1jm7_B BARD1, BRCA1-associated 99.0 1.2E-10 4.2E-15 97.6 1.9 52 335-388 21-72 (117)
51 3knv_A TNF receptor-associated 98.9 1.7E-10 5.7E-15 100.4 1.3 49 334-383 29-78 (141)
52 2y1n_A E3 ubiquitin-protein li 98.9 5E-10 1.7E-14 112.2 4.4 53 336-389 332-385 (389)
53 3l11_A E3 ubiquitin-protein li 98.9 2.4E-10 8.3E-15 95.3 1.6 47 335-382 14-61 (115)
54 3htk_C E3 SUMO-protein ligase 98.9 9E-10 3.1E-14 104.6 5.6 54 335-388 180-237 (267)
55 1bor_A Transcription factor PM 98.9 7.3E-10 2.5E-14 81.0 2.3 46 335-384 5-50 (56)
56 1v87_A Deltex protein 2; ring- 98.9 1E-09 3.5E-14 91.2 3.4 46 336-382 25-93 (114)
57 1e4u_A Transcriptional repress 98.8 2.5E-09 8.4E-14 83.8 5.3 53 335-387 10-66 (78)
58 3hcs_A TNF receptor-associated 98.8 1.3E-09 4.6E-14 96.9 4.0 54 334-388 16-70 (170)
59 4ic3_A E3 ubiquitin-protein li 98.8 1.9E-09 6.6E-14 83.2 3.2 49 336-391 24-73 (74)
60 2ecg_A Baculoviral IAP repeat- 98.7 6.8E-09 2.3E-13 80.2 4.3 49 336-391 25-74 (75)
61 3dpl_R Ring-box protein 1; ubi 98.7 6.6E-09 2.2E-13 86.1 4.3 50 335-384 36-102 (106)
62 2ea5_A Cell growth regulator w 98.7 2E-08 7E-13 76.4 6.3 51 335-392 14-65 (68)
63 2yho_A E3 ubiquitin-protein li 98.6 1.9E-08 6.6E-13 78.8 3.6 50 336-392 18-68 (79)
64 4a0k_B E3 ubiquitin-protein li 98.5 9.8E-09 3.4E-13 86.6 0.3 50 336-385 48-114 (117)
65 1wim_A KIAA0161 protein; ring 98.4 6E-08 2.1E-12 78.0 1.1 55 335-389 4-72 (94)
66 3t6p_A Baculoviral IAP repeat- 98.4 1E-07 3.4E-12 94.5 2.1 50 335-391 294-344 (345)
67 3vk6_A E3 ubiquitin-protein li 98.3 4.2E-07 1.4E-11 73.8 3.7 44 338-382 3-48 (101)
68 2d8s_A Cellular modulator of i 98.2 1.4E-06 4.8E-11 68.4 4.3 51 334-385 13-72 (80)
69 2ct0_A Non-SMC element 1 homol 98.0 6.2E-06 2.1E-10 63.8 5.5 49 334-382 13-63 (74)
70 3m62_A Ubiquitin conjugation f 97.3 0.00014 4.6E-09 80.0 4.2 53 335-388 890-943 (968)
71 3k1l_B Fancl; UBC, ring, RWD, 97.2 0.00016 5.4E-09 71.1 2.9 49 335-383 307-373 (381)
72 1vyx_A ORF K3, K3RING; zinc-bi 96.3 0.0026 8.8E-08 46.8 3.5 48 335-383 5-59 (60)
73 3nw0_A Non-structural maintena 96.3 0.0035 1.2E-07 58.8 4.8 47 337-383 181-229 (238)
74 2cs3_A Protein C14ORF4, MY039 95.1 0.029 9.8E-07 43.6 4.9 35 336-370 15-52 (93)
75 3i2d_A E3 SUMO-protein ligase 93.0 0.079 2.7E-06 52.5 4.7 52 336-387 249-304 (371)
76 4fo9_A E3 SUMO-protein ligase 92.3 0.11 3.8E-06 51.3 4.7 51 336-387 215-270 (360)
77 2jun_A Midline-1; B-BOX, TRIM, 90.2 0.17 5.8E-06 40.1 3.0 30 336-366 3-35 (101)
78 2ko5_A Ring finger protein Z; 90.0 0.14 4.8E-06 40.9 2.2 45 336-382 28-72 (99)
79 2fiy_A Protein FDHE homolog; F 89.9 0.041 1.4E-06 53.4 -1.2 46 335-380 181-231 (309)
80 2jne_A Hypothetical protein YF 85.2 0.047 1.6E-06 43.8 -3.2 41 336-382 32-72 (101)
81 3vth_A Hydrogenase maturation 85.0 0.25 8.5E-06 53.5 1.2 52 331-382 106-194 (761)
82 1weo_A Cellulose synthase, cat 84.0 1.3 4.6E-05 34.9 4.6 47 336-382 16-69 (93)
83 1m3v_A FLIN4, fusion of the LI 82.3 0.97 3.3E-05 37.1 3.5 52 336-387 32-85 (122)
84 1wd2_A Ariadne-1 protein homol 79.5 0.54 1.9E-05 34.3 0.9 36 335-370 5-47 (60)
85 2jrp_A Putative cytoplasmic pr 79.0 0.19 6.6E-06 39.1 -1.8 41 337-383 3-43 (81)
86 4g9i_A Hydrogenase maturation 78.4 0.54 1.8E-05 51.0 0.8 51 332-382 102-189 (772)
87 1x64_A Alpha-actinin-2 associa 78.2 4.5 0.00015 31.0 5.9 41 335-384 24-64 (89)
88 1wff_A Riken cDNA 2810002D23 p 78.1 3.3 0.00011 32.3 5.0 50 335-388 24-75 (85)
89 3ttc_A HYPF, transcriptional r 77.3 0.66 2.2E-05 49.4 1.1 49 333-381 14-99 (657)
90 2gmg_A Hypothetical protein PF 76.9 0.49 1.7E-05 38.5 -0.0 29 347-380 65-93 (105)
91 3pwf_A Rubrerythrin; non heme 75.9 0.82 2.8E-05 40.3 1.1 10 372-381 154-163 (170)
92 2ct7_A Ring finger protein 31; 75.3 0.76 2.6E-05 35.7 0.7 34 338-371 27-65 (86)
93 2jmo_A Parkin; IBR, E3 ligase, 73.9 0.48 1.7E-05 36.5 -0.8 36 337-374 26-73 (80)
94 3mjh_B Early endosome antigen 69.9 0.7 2.4E-05 30.0 -0.6 19 335-353 4-22 (34)
95 2xjy_A Rhombotin-2; oncoprotei 68.4 3.6 0.00012 33.7 3.4 49 335-384 28-79 (131)
96 2xqn_T Testin, TESS; metal-bin 67.3 6.4 0.00022 31.9 4.7 48 335-384 29-76 (126)
97 3zyq_A Hepatocyte growth facto 66.6 3.3 0.00011 37.9 3.0 32 336-367 164-198 (226)
98 1joc_A EEA1, early endosomal a 65.5 2.7 9.2E-05 35.0 2.0 32 336-367 69-103 (125)
99 1lko_A Rubrerythrin all-iron(I 65.3 1.5 5.1E-05 39.2 0.4 10 372-381 172-181 (191)
100 1yuz_A Nigerythrin; rubrythrin 64.3 2 7E-05 38.7 1.1 10 372-381 187-196 (202)
101 1dvp_A HRS, hepatocyte growth 63.9 5.4 0.00019 36.1 3.9 32 336-367 161-195 (220)
102 1x4w_A Hypothetical protein FL 63.3 3.4 0.00012 30.8 2.0 44 335-382 14-61 (67)
103 1rut_X Flinc4, fusion protein 63.3 2.5 8.4E-05 37.3 1.4 50 335-385 31-83 (188)
104 1wfk_A Zinc finger, FYVE domai 63.0 4 0.00014 31.9 2.5 34 334-367 7-43 (88)
105 2cup_A Skeletal muscle LIM-pro 62.8 7.7 0.00026 30.1 4.2 53 335-389 32-85 (101)
106 1z60_A TFIIH basal transcripti 62.4 4.3 0.00015 29.5 2.3 40 337-377 16-58 (59)
107 1y02_A CARP2, FYVE-ring finger 59.9 4.3 0.00015 33.7 2.2 42 336-377 19-63 (120)
108 1z2q_A LM5-1; membrane protein 59.7 4.8 0.00016 31.0 2.3 33 335-367 20-55 (84)
109 1x4u_A Zinc finger, FYVE domai 58.8 4.9 0.00017 30.9 2.2 32 335-366 13-47 (84)
110 2yw8_A RUN and FYVE domain-con 58.5 4.9 0.00017 30.8 2.2 33 335-367 18-53 (82)
111 3t7l_A Zinc finger FYVE domain 58.1 4.8 0.00016 31.5 2.1 33 336-368 20-55 (90)
112 2rgt_A Fusion of LIM/homeobox 57.4 13 0.00044 31.9 5.0 49 335-386 32-80 (169)
113 6rxn_A Rubredoxin; electron tr 56.7 2.5 8.6E-05 29.2 0.2 10 371-380 30-39 (46)
114 2co8_A NEDD9 interacting prote 55.2 12 0.00041 28.1 3.9 42 336-385 15-56 (82)
115 1vfy_A Phosphatidylinositol-3- 54.6 6.6 0.00022 29.3 2.3 30 337-366 12-44 (73)
116 2jtn_A LIM domain-binding prot 54.0 13 0.00044 32.3 4.5 48 335-385 86-133 (182)
117 1wfh_A Zinc finger (AN1-like) 53.6 12 0.00041 27.6 3.4 46 336-385 15-61 (64)
118 3mpx_A FYVE, rhogef and PH dom 52.7 2.9 0.0001 41.3 0.0 33 336-368 375-410 (434)
119 1b8t_A Protein (CRP1); LIM dom 52.1 14 0.00048 32.4 4.5 35 335-369 33-67 (192)
120 1s24_A Rubredoxin 2; electron 49.8 3 0.0001 32.8 -0.3 13 368-380 65-77 (87)
121 1wfp_A Zinc finger (AN1-like) 48.5 23 0.0008 26.8 4.4 47 335-385 24-71 (74)
122 1wg2_A Zinc finger (AN1-like) 48.3 16 0.00053 27.0 3.3 48 335-386 14-62 (64)
123 1l8d_A DNA double-strand break 47.1 4.9 0.00017 32.2 0.6 13 371-383 47-59 (112)
124 2kn9_A Rubredoxin; metalloprot 47.1 3.3 0.00011 32.1 -0.5 11 370-380 59-69 (81)
125 1nui_A DNA primase/helicase; z 46.9 5.8 0.0002 36.5 1.1 26 336-364 14-40 (255)
126 2pk7_A Uncharacterized protein 46.6 7.7 0.00026 29.0 1.5 13 335-347 7-19 (69)
127 2uzg_A Ubiquitin carboxyl-term 46.2 16 0.00055 28.9 3.5 36 336-371 25-66 (97)
128 1pft_A TFIIB, PFTFIIBN; N-term 44.4 15 0.0005 25.1 2.6 24 336-359 5-34 (50)
129 1x61_A Thyroid receptor intera 43.6 28 0.00095 24.9 4.2 35 335-369 32-66 (72)
130 2lv2_A Insulinoma-associated p 43.6 9.5 0.00032 29.1 1.7 36 335-382 27-67 (85)
131 2v3b_B Rubredoxin 2, rubredoxi 43.3 4.8 0.00016 28.8 -0.1 11 370-380 35-45 (55)
132 1wfl_A Zinc finger protein 216 41.3 30 0.001 26.2 4.1 43 335-381 24-67 (74)
133 1e8j_A Rubredoxin; iron-sulfur 41.0 15 0.0005 25.9 2.2 9 372-380 37-45 (52)
134 1x62_A C-terminal LIM domain p 40.1 21 0.00071 26.4 3.1 38 336-382 15-52 (79)
135 1x4v_A Hypothetical protein LO 39.7 44 0.0015 24.4 4.7 45 335-382 11-57 (63)
136 2pv0_B DNA (cytosine-5)-methyl 39.2 21 0.00071 35.4 3.7 43 336-379 93-147 (386)
137 1dx8_A Rubredoxin; electron tr 39.1 5.3 0.00018 30.0 -0.4 12 369-380 38-49 (70)
138 2g45_A Ubiquitin carboxyl-term 39.0 25 0.00085 29.4 3.7 36 335-371 33-78 (129)
139 2hf1_A Tetraacyldisaccharide-1 38.7 11 0.00039 28.0 1.3 12 336-347 8-19 (68)
140 4rxn_A Rubredoxin; electron tr 38.0 5.7 0.00019 28.3 -0.4 13 368-380 33-45 (54)
141 3c5k_A HD6, histone deacetylas 37.4 15 0.00052 29.7 2.1 34 336-370 24-61 (109)
142 1iml_A CRIP, cysteine rich int 37.2 28 0.00096 25.3 3.4 45 335-381 26-71 (76)
143 2dar_A PDZ and LIM domain prot 37.1 27 0.00094 26.4 3.4 40 336-384 25-64 (90)
144 2lri_C Autoimmune regulator; Z 36.5 52 0.0018 24.0 4.7 47 333-380 9-59 (66)
145 2jr6_A UPF0434 protein NMA0874 36.1 17 0.00057 27.0 1.9 13 335-347 7-19 (68)
146 2jny_A Uncharacterized BCR; st 35.1 16 0.00054 27.1 1.6 14 335-348 9-22 (67)
147 2zjr_Z 50S ribosomal protein L 34.9 13 0.00044 27.0 1.1 22 336-357 30-51 (60)
148 2d8x_A Protein pinch; LIM doma 34.6 20 0.00069 25.6 2.2 31 336-366 31-61 (70)
149 2cur_A Skeletal muscle LIM-pro 34.5 26 0.00089 24.9 2.8 32 336-367 31-62 (69)
150 1x4l_A Skeletal muscle LIM-pro 33.5 25 0.00087 25.2 2.6 30 336-365 35-64 (72)
151 1wyh_A SLIM 2, skeletal muscle 33.5 27 0.00093 25.0 2.7 31 336-366 33-63 (72)
152 2cu8_A Cysteine-rich protein 2 33.2 18 0.00063 26.4 1.8 11 337-347 10-20 (76)
153 2cur_A Skeletal muscle LIM-pro 33.2 38 0.0013 24.0 3.5 40 336-384 5-44 (69)
154 2lcq_A Putative toxin VAPC6; P 33.1 8.3 0.00028 33.1 -0.2 10 372-381 149-158 (165)
155 1bbo_A Human enhancer-binding 32.8 18 0.00062 23.9 1.6 34 337-382 2-40 (57)
156 3v2d_5 50S ribosomal protein L 32.8 13 0.00046 26.9 0.9 22 336-357 30-51 (60)
157 1b8t_A Protein (CRP1); LIM dom 32.6 38 0.0013 29.5 4.1 45 335-381 141-185 (192)
158 1zfo_A LAsp-1; LIM domain, zin 32.2 24 0.00084 21.7 1.9 27 337-363 4-30 (31)
159 3pwf_A Rubrerythrin; non heme 31.7 11 0.00039 32.9 0.4 23 336-358 138-162 (170)
160 2d8x_A Protein pinch; LIM doma 31.5 31 0.001 24.6 2.7 41 336-385 5-45 (70)
161 2cor_A Pinch protein; LIM doma 30.6 49 0.0017 24.4 3.8 28 336-364 41-68 (79)
162 1x4k_A Skeletal muscle LIM-pro 30.6 32 0.0011 24.6 2.7 29 337-365 34-62 (72)
163 2gvi_A Conserved hypothetical 29.8 15 0.00053 32.9 1.0 30 335-365 171-201 (204)
164 1wfe_A Riken cDNA 2310008M20 p 29.5 35 0.0012 26.5 2.8 39 335-376 24-64 (86)
165 2lce_A B-cell lymphoma 6 prote 29.5 22 0.00074 25.1 1.6 40 335-382 16-56 (74)
166 2kpi_A Uncharacterized protein 29.3 19 0.00066 25.6 1.2 13 335-347 9-21 (56)
167 2adr_A ADR1; transcription reg 29.3 22 0.00076 23.8 1.6 34 337-382 3-41 (60)
168 1wig_A KIAA1808 protein; LIM d 29.1 40 0.0014 24.5 3.0 36 335-370 30-66 (73)
169 2dar_A PDZ and LIM domain prot 28.7 44 0.0015 25.2 3.3 34 335-368 50-83 (90)
170 2vrw_B P95VAV, VAV1, proto-onc 28.1 25 0.00087 34.2 2.3 31 335-365 356-390 (406)
171 2epr_A POZ-, at HOOK-, and zin 28.1 19 0.00065 23.2 1.0 32 336-379 12-48 (48)
172 2iyb_E Testin, TESS, TES; LIM 28.1 30 0.001 24.4 2.1 31 335-365 31-62 (65)
173 1dl6_A Transcription factor II 28.0 21 0.00073 25.4 1.3 9 336-344 11-19 (58)
174 2d8z_A Four and A half LIM dom 27.7 45 0.0015 23.6 3.1 32 336-367 31-62 (70)
175 1wig_A KIAA1808 protein; LIM d 27.5 34 0.0012 24.8 2.4 38 336-382 5-42 (73)
176 1x68_A FHL5 protein; four-and- 27.4 45 0.0015 24.2 3.1 12 337-348 6-17 (76)
177 3vhs_A ATPase wrnip1; zinc fin 27.3 11 0.00039 22.6 -0.3 8 373-380 8-15 (29)
178 1nyp_A Pinch protein; LIM doma 27.0 41 0.0014 23.6 2.7 30 336-365 31-60 (66)
179 1wil_A KIAA1045 protein; ring 26.6 78 0.0027 24.6 4.3 33 335-367 14-47 (89)
180 3ihp_A Ubiquitin carboxyl-term 26.5 36 0.0012 37.1 3.3 37 335-372 214-260 (854)
181 1wyh_A SLIM 2, skeletal muscle 26.5 37 0.0013 24.2 2.4 42 336-385 5-47 (72)
182 2js4_A UPF0434 protein BB2007; 26.4 25 0.00087 26.2 1.5 13 335-347 7-19 (70)
183 1x64_A Alpha-actinin-2 associa 25.6 50 0.0017 24.8 3.1 34 336-369 51-84 (89)
184 2epq_A POZ-, at HOOK-, and zin 25.5 15 0.0005 23.3 0.0 17 336-352 10-26 (45)
185 2l4z_A DNA endonuclease RBBP8, 25.4 20 0.0007 29.2 0.9 39 336-382 61-99 (123)
186 3a1b_A DNA (cytosine-5)-methyl 24.9 46 0.0016 28.9 3.0 43 336-379 79-133 (159)
187 2cor_A Pinch protein; LIM doma 24.8 79 0.0027 23.2 4.1 40 336-384 15-54 (79)
188 2cot_A Zinc finger protein 435 24.2 35 0.0012 24.2 1.9 36 335-382 17-57 (77)
189 2ehe_A Four and A half LIM dom 24.1 50 0.0017 24.2 2.8 10 338-347 17-26 (82)
190 3uk3_C Zinc finger protein 217 24.0 17 0.00058 24.0 0.1 39 336-382 4-43 (57)
191 1m3v_A FLIN4, fusion of the LI 23.8 62 0.0021 25.9 3.6 39 336-382 5-43 (122)
192 2egq_A FHL1 protein; LIM domai 23.7 45 0.0015 24.1 2.5 10 338-347 17-26 (77)
193 1v6g_A Actin binding LIM prote 23.7 42 0.0014 24.6 2.3 37 337-382 16-52 (81)
194 1wys_A Riken cDNA 2310008M20 p 23.3 69 0.0024 24.2 3.4 45 332-379 10-56 (75)
195 4ayb_P DNA-directed RNA polyme 23.3 67 0.0023 22.2 3.0 10 372-381 24-33 (48)
196 3avr_A Lysine-specific demethy 23.2 12 0.00042 38.6 -1.1 51 335-391 457-518 (531)
197 2d8y_A Eplin protein; LIM doma 23.2 72 0.0025 24.0 3.6 32 336-367 42-73 (91)
198 1x6a_A LIMK-2, LIM domain kina 23.1 40 0.0014 24.7 2.1 33 336-368 41-75 (81)
199 2dlo_A Thyroid receptor-intera 22.8 44 0.0015 24.6 2.2 28 337-364 42-70 (81)
200 1x62_A C-terminal LIM domain p 22.8 36 0.0012 25.0 1.8 35 336-370 41-75 (79)
201 1x4k_A Skeletal muscle LIM-pro 22.6 60 0.002 23.0 2.9 42 336-385 5-47 (72)
202 1x6e_A Zinc finger protein 24; 22.6 19 0.00064 25.4 0.1 40 335-382 13-53 (72)
203 2dj7_A Actin-binding LIM prote 22.5 37 0.0013 25.2 1.8 39 336-382 15-53 (80)
204 2ytn_A Zinc finger protein 347 21.8 51 0.0017 20.6 2.2 18 336-353 12-29 (46)
205 1x63_A Skeletal muscle LIM-pro 21.6 74 0.0025 23.2 3.3 31 336-366 43-73 (82)
206 2dmd_A Zinc finger protein 64, 21.5 56 0.0019 23.9 2.6 47 335-381 7-74 (96)
207 2cuq_A Four and A half LIM dom 21.5 71 0.0024 23.2 3.2 33 335-367 40-72 (80)
208 2k5c_A Uncharacterized protein 21.1 21 0.00073 27.6 0.1 12 336-347 8-19 (95)
209 2eps_A POZ-, at HOOK-, and zin 20.9 42 0.0014 22.2 1.6 34 336-381 12-51 (54)
210 2i50_A Ubiquitin carboxyl-term 20.7 25 0.00084 29.2 0.4 34 337-370 29-80 (126)
211 2d8y_A Eplin protein; LIM doma 20.6 50 0.0017 24.9 2.2 41 336-384 15-55 (91)
212 3k1f_M Transcription initiatio 20.5 56 0.0019 29.0 2.7 28 335-362 20-55 (197)
213 2zet_C Melanophilin; complex, 20.4 39 0.0013 29.0 1.7 42 336-378 68-115 (153)
214 2eop_A Zinc finger protein 268 20.3 56 0.0019 20.3 2.1 18 336-353 12-29 (46)
No 1
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.41 E-value=1.2e-13 Score=103.63 Aligned_cols=57 Identities=19% Similarity=0.363 Sum_probs=52.0
Q ss_pred CCCCCCCCCCCCCceeccCccccccHHHHHHHhhcCCCCCCCCCCCCcCCeeeCccC
Q 016213 336 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRRLFHD 392 (393)
Q Consensus 336 ~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~l~riy~~ 392 (393)
...||||++.++||++++.|||+||..||.+|++++++||+|+.+++.+||+++...
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~~~~ 59 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVPS 59 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEECCCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEECccC
Confidence 468999999999999984499999999999999999999999999999999998753
No 2
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.39 E-value=1e-13 Score=105.57 Aligned_cols=57 Identities=18% Similarity=0.483 Sum_probs=52.0
Q ss_pred CCCCCCCCCCCCCCCc-------eeccCccccccHHHHHHHhhcCCCCCCCCCCCCcCCeeeCcc
Q 016213 334 PDRTICPLCSQKRANP-------SVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRRLFH 391 (393)
Q Consensus 334 ~~~~~CpiC~~~~~np-------~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~l~riy~ 391 (393)
.+...||||++.+.+| ++++ |||+||..||.+|++++..||+|+.+++.+++++||.
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l 71 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 71 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChhheeeccC
Confidence 3577899999999988 5665 9999999999999999999999999999999999984
No 3
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.38 E-value=4.1e-13 Score=107.06 Aligned_cols=54 Identities=19% Similarity=0.168 Sum_probs=50.6
Q ss_pred CCCCCCCCCCCCCCceeccCccccccHHHHHHHhhcCCCCCCCCCCCCcCCeeeC
Q 016213 335 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRRL 389 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~l~ri 389 (393)
+...||||++.++||++++ |||+||..||.+|+.+++.||+|+.+++.++|+.-
T Consensus 13 ~~~~CpI~~~~m~dPV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn 66 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDPVRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPV 66 (85)
T ss_dssp TTTBCTTTCSBCSSEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEEC
T ss_pred hheECcccCchhcCCeECC-CCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchH
Confidence 6889999999999999998 99999999999999999999999999998888753
No 4
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.37 E-value=2.1e-13 Score=101.52 Aligned_cols=56 Identities=18% Similarity=0.478 Sum_probs=50.9
Q ss_pred CCCCCCCCCCCCCCc-------eeccCccccccHHHHHHHhhcCCCCCCCCCCCCcCCeeeCcc
Q 016213 335 DRTICPLCSQKRANP-------SVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRRLFH 391 (393)
Q Consensus 335 ~~~~CpiC~~~~~np-------~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~l~riy~ 391 (393)
+...||||++.+.+| .+++ |||+||..||.+|++++..||+|+.+++.+++++||.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l 64 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 64 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEECCC
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCccceeeeeC
Confidence 356899999999887 5555 9999999999999999999999999999999999984
No 5
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.37 E-value=5.5e-13 Score=103.71 Aligned_cols=53 Identities=19% Similarity=0.383 Sum_probs=48.7
Q ss_pred CCCCCCCCCCCCCCceeccCccccccHHHHHHHhhc-CCCCCCCCCCCCcCCeee
Q 016213 335 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQ-YKRCPVTLMPATVEQIRR 388 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~-~~~CPv~~~~~~~~~l~r 388 (393)
+...||||++.+.+|++++ |||+||..||.+|++. +..||+|+.+++.+++++
T Consensus 7 ~~~~C~IC~~~~~~Pv~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~ 60 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTP 60 (78)
T ss_dssp SSSSCTTTSCCCSSEEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEE
T ss_pred ccCCCCCccccccCCEEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCcc
Confidence 5789999999999999987 9999999999999997 789999999998887764
No 6
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.2e-12 Score=100.48 Aligned_cols=55 Identities=20% Similarity=0.383 Sum_probs=49.7
Q ss_pred CCCCCCCCCCCCCCceeccCccccccHHHHHHHhhcCCCCCCCCCCCCcCCeeeC
Q 016213 335 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRRL 389 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~l~ri 389 (393)
+...||||++.+.+|+++..|||+||+.||.+|++.+..||+|+.+++.++++..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 14 PYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp GGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCC
T ss_pred CCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccccc
Confidence 5678999999999999875599999999999999999999999999998887654
No 7
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.33 E-value=8.3e-13 Score=108.56 Aligned_cols=54 Identities=17% Similarity=0.181 Sum_probs=50.7
Q ss_pred CCCCCCCCCCCCCCceeccCccccccHHHHHHHhhcCCCCCCCCCCCCcCCeeeC
Q 016213 335 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRRL 389 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~l~ri 389 (393)
+...||||++.++||++++ |||+||..||.+|+.++..||+|+.+++.++|++-
T Consensus 28 ~~~~CpI~~~~m~dPV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn 81 (100)
T 2kre_A 28 DEFRDPLMDTLMTDPVRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPV 81 (100)
T ss_dssp TTTBCTTTCSBCSSEEEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEEC
T ss_pred HhhCCcCccCcccCCeECC-CCCEEchHHHHHHHHcCCCCCCCCCCCChhhceEC
Confidence 6889999999999999998 99999999999999999999999999998888753
No 8
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=9.1e-13 Score=100.89 Aligned_cols=54 Identities=22% Similarity=0.415 Sum_probs=49.2
Q ss_pred CCCCCCCCCCCCCCceeccCccccccHHHHHHHhhcCCCCCCCCCCCCcCCeeeC
Q 016213 335 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRRL 389 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~l~ri 389 (393)
+...||||++.+.+|++++ |||+||+.||.+|+..+..||+|+.+++.+++++-
T Consensus 14 ~~~~C~IC~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~p 67 (71)
T 2d8t_A 14 TVPECAICLQTCVHPVSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPEDFLDSG 67 (71)
T ss_dssp SCCBCSSSSSBCSSEEEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHHSCS
T ss_pred CCCCCccCCcccCCCEEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCHhhccCC
Confidence 4678999999999999987 99999999999999999999999999988777653
No 9
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.30 E-value=2.4e-12 Score=105.39 Aligned_cols=54 Identities=24% Similarity=0.286 Sum_probs=50.4
Q ss_pred CCCCCCCCCCCCCCceeccCcc-ccccHHHHHHHhhcCCCCCCCCCCCCcCCeeeC
Q 016213 335 DRTICPLCSQKRANPSVVTVSG-FVFCYACIFKYVSQYKRCPVTLMPATVEQIRRL 389 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~~~G-~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~l~ri 389 (393)
+...||||++.++||++++ || |+||..||.+|+.++..||+|+.+++.++|++-
T Consensus 21 ~~~~CpI~~~~m~dPV~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn 75 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDPVVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPN 75 (98)
T ss_dssp TTTBCTTTCSBCSSEEECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEEC
T ss_pred HhcCCcCccccccCCeECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEc
Confidence 5789999999999999997 99 999999999999999999999999998888764
No 10
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.9e-12 Score=97.59 Aligned_cols=51 Identities=20% Similarity=0.495 Sum_probs=46.0
Q ss_pred CCCCCCCCCCCCCCceeccCccccccHHHHHHHhh-cCCCCCCCCCCCCcCCe
Q 016213 335 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVS-QYKRCPVTLMPATVEQI 386 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~-~~~~CPv~~~~~~~~~l 386 (393)
+...||||++.+++|++++ |||+||+.||.+|++ .+..||+|+.+++.++|
T Consensus 14 ~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSPKQTE-CGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCEECTTTCCEESSCCCCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred cCCCCCCCChHhcCeeECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 5678999999999999986 999999999999995 56799999999988775
No 11
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=4.3e-12 Score=97.16 Aligned_cols=53 Identities=26% Similarity=0.678 Sum_probs=47.2
Q ss_pred CCCCCCCCCCCCCCCceeccCccccccHHHHHHHhh---cCCCCCCCCCCCCcCCee
Q 016213 334 PDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVS---QYKRCPVTLMPATVEQIR 387 (393)
Q Consensus 334 ~~~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~---~~~~CPv~~~~~~~~~l~ 387 (393)
.+...||||++.+.+|++++ |||+||..||.+|++ .+..||+|+.+++.++++
T Consensus 18 ~~~~~C~IC~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~r 73 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAIR 73 (73)
T ss_dssp CCCCBCTTTCSBCSSEEECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCCC
T ss_pred ccCCEeccCCcccCCeEEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccCC
Confidence 35779999999999999986 999999999999997 456999999999988764
No 12
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.23 E-value=5.9e-12 Score=94.57 Aligned_cols=58 Identities=29% Similarity=0.573 Sum_probs=48.1
Q ss_pred CCCCCCCCCC-CCCCce---eccCccccccHHHHHHHhhc-CCCCCCCCCCCCcCCeeeCccC
Q 016213 335 DRTICPLCSQ-KRANPS---VVTVSGFVFCYACIFKYVSQ-YKRCPVTLMPATVEQIRRLFHD 392 (393)
Q Consensus 335 ~~~~CpiC~~-~~~np~---~~~~~G~vfCy~Ci~~~~~~-~~~CPv~~~~~~~~~l~riy~~ 392 (393)
+...||||++ .+.+|. ++..|||+||..||.+|+.+ ...||+|+.+++.+++++.+.+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~ 64 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQLFE 64 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEECCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceeeccc
Confidence 3568999999 888984 33349999999999999765 4789999999999999876543
No 13
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=7.9e-12 Score=98.87 Aligned_cols=56 Identities=21% Similarity=0.571 Sum_probs=48.7
Q ss_pred CCCCCCCCCCCCCCC----ceeccCccccccHHHHHHHhhcC---CCCCCCCCCCCcCCeeeCc
Q 016213 334 PDRTICPLCSQKRAN----PSVVTVSGFVFCYACIFKYVSQY---KRCPVTLMPATVEQIRRLF 390 (393)
Q Consensus 334 ~~~~~CpiC~~~~~n----p~~~~~~G~vfCy~Ci~~~~~~~---~~CPv~~~~~~~~~l~riy 390 (393)
.+...||||++.+.+ |.+++ |||+||..||.+|++.+ ..||+|+.++...++..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~l~ 75 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQLT 75 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTTSE
T ss_pred cCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHHHH
Confidence 356789999999999 88886 99999999999999986 7999999998877665554
No 14
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.22 E-value=1.7e-11 Score=95.91 Aligned_cols=55 Identities=24% Similarity=0.562 Sum_probs=49.6
Q ss_pred CCCCCCCCCCCCCCceeccCccccccHHHHHHHhhc------CCCCCCCCCCCCcCCeeeCc
Q 016213 335 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQ------YKRCPVTLMPATVEQIRRLF 390 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~------~~~CPv~~~~~~~~~l~riy 390 (393)
+...||||++.+.+|.+++ |||+||..||.+|++. ...||+|+.+++.+++++-+
T Consensus 18 ~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~ 78 (85)
T 2ecw_A 18 EEVTCPICLELLKEPVSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNL 78 (85)
T ss_dssp TTTSCTTTCSCCSSCEECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECS
T ss_pred cCCCCcCCChhhCcceeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCH
Confidence 4678999999999999987 9999999999999998 67999999999988887654
No 15
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=1.2e-11 Score=96.86 Aligned_cols=47 Identities=26% Similarity=0.475 Sum_probs=43.8
Q ss_pred CCCCCCCCCCCCCCceeccCccccccHHHHHHHhhcCCCCCCCCCCCC
Q 016213 335 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPAT 382 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~ 382 (393)
+...||||++.+.+|++++ |||+||+.||.+|++....||+|+.++.
T Consensus 14 ~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQNPVVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCSEEECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCcCCCchhcCeeEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 4678999999999999886 9999999999999999999999999875
No 16
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.22 E-value=6.6e-12 Score=102.70 Aligned_cols=56 Identities=16% Similarity=0.482 Sum_probs=49.8
Q ss_pred CCCCCCCCCCCCCCceeccCccccccHHHHHHHhhcC-CCCCCCCCCCCcCCeeeCc
Q 016213 335 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQY-KRCPVTLMPATVEQIRRLF 390 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~-~~CPv~~~~~~~~~l~riy 390 (393)
+...||||++.+.+|+.+..|||+||+.||.+|++.. ..||+|+.++..+++++..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~ 77 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCR 77 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECT
T ss_pred CCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhH
Confidence 3578999999999999833499999999999999998 6999999999999988754
No 17
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=2.2e-11 Score=95.26 Aligned_cols=55 Identities=27% Similarity=0.578 Sum_probs=49.2
Q ss_pred CCCCCCCCCCCCCCceeccCccccccHHHHHHHhhc------CCCCCCCCCCCCcCCeeeCc
Q 016213 335 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQ------YKRCPVTLMPATVEQIRRLF 390 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~------~~~CPv~~~~~~~~~l~riy 390 (393)
+...||||++.+.+|.+++ |||+||..|+.+|++. ...||+|+.+++.+++++-+
T Consensus 18 ~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~ 78 (85)
T 2ecv_A 18 EEVTCPICLELLTQPLSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNR 78 (85)
T ss_dssp CCCCCTTTCSCCSSCBCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSC
T ss_pred CCCCCCCCCcccCCceeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccH
Confidence 5678999999999999986 9999999999999987 78999999999888776543
No 18
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.19 E-value=1.1e-11 Score=100.86 Aligned_cols=54 Identities=20% Similarity=0.476 Sum_probs=48.4
Q ss_pred CCCCCCCCCCCCCCceeccCccccccHHHHHHHhhcCCCCCCCCCCCCcCCeee
Q 016213 335 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRR 388 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~l~r 388 (393)
+...||||++.+.+|.++..|||+||..||.+|+..+..||+|+.+++..++++
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~ 74 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKN 74 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEE
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCc
Confidence 357899999999999887459999999999999999999999999998777664
No 19
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.19 E-value=1.3e-11 Score=95.34 Aligned_cols=48 Identities=21% Similarity=0.535 Sum_probs=43.2
Q ss_pred CCCCCCCCCCCCCCceeccCccccccHHHHHHHhhcC--CCCCCCCCCCC
Q 016213 335 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQY--KRCPVTLMPAT 382 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~--~~CPv~~~~~~ 382 (393)
+...||||++.+.+|++++.|||+||..||.+|++.+ ..||+|+.+..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 14 DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp GGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 5678999999999999986699999999999999976 68999999854
No 20
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.18 E-value=4.8e-12 Score=98.27 Aligned_cols=54 Identities=24% Similarity=0.563 Sum_probs=48.1
Q ss_pred CCCCCCCCCCCCCCceeccCccccccHHHHHHHhhc-------CCCCCCCCCCCCcCCeeeC
Q 016213 335 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQ-------YKRCPVTLMPATVEQIRRL 389 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~-------~~~CPv~~~~~~~~~l~ri 389 (393)
+...||||++.+.+|.+++ |||+||..||.+|++. ...||+|+.+++.+++++-
T Consensus 11 ~~~~C~IC~~~~~~p~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n 71 (79)
T 2egp_A 11 EEVTCPICLELLTEPLSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQAN 71 (79)
T ss_dssp CCCEETTTTEECSSCCCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTC
T ss_pred cCCCCcCCCcccCCeeECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcC
Confidence 5778999999999999986 9999999999999987 6799999999987776643
No 21
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.17 E-value=2.1e-11 Score=97.67 Aligned_cols=54 Identities=20% Similarity=0.539 Sum_probs=46.0
Q ss_pred CCCCCCCCCCCCCCCceeccCccccccHHHHHHHhhcC--CCCCCCCCCC-CcCCee
Q 016213 334 PDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQY--KRCPVTLMPA-TVEQIR 387 (393)
Q Consensus 334 ~~~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~--~~CPv~~~~~-~~~~l~ 387 (393)
.+...||||++.+.+|++++.|||+||..||.+|+.+. ..||+|+.++ ..+++.
T Consensus 11 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~ 67 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALI 67 (92)
T ss_dssp CTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCE
T ss_pred CcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccC
Confidence 35789999999999999886599999999999999865 4899999996 455554
No 22
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.17 E-value=2.8e-11 Score=91.34 Aligned_cols=48 Identities=29% Similarity=0.710 Sum_probs=42.4
Q ss_pred CCCCCCCCCCCCCCceeccCccccccHHHHHHHhhcCCCCCCCCCCCC
Q 016213 335 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPAT 382 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~ 382 (393)
+...||||++.+.+|.+...|||+||+.||.+|++++..||+|+.+++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 467899999999998544459999999999999999999999998875
No 23
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.5e-11 Score=92.64 Aligned_cols=48 Identities=21% Similarity=0.519 Sum_probs=42.8
Q ss_pred CCCCCCCCCCCCCCc-------eeccCccccccHHHHHHHhhcCCCCCCCCCCCCc
Q 016213 335 DRTICPLCSQKRANP-------SVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATV 383 (393)
Q Consensus 335 ~~~~CpiC~~~~~np-------~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~ 383 (393)
+...||||++.+.+| .+++ |||+||..||.+|++.+..||+|+.+++.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 567899999999887 5665 99999999999999999999999988753
No 24
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.15 E-value=1.6e-11 Score=110.96 Aligned_cols=54 Identities=20% Similarity=0.166 Sum_probs=49.0
Q ss_pred CCCCCCCCCCCCCCceeccCccccccHHHHHHHhhcCC-CCCCCCCCCCcCCeeeC
Q 016213 335 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYK-RCPVTLMPATVEQIRRL 389 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~~-~CPv~~~~~~~~~l~ri 389 (393)
+...||||++.++||++++ |||+||..||..|+..++ .||+|+.+++..+|++-
T Consensus 105 ~~f~CPI~~elm~DPV~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN 159 (179)
T 2f42_A 105 DYLCGKISFELMREPCITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPN 159 (179)
T ss_dssp GGGBCTTTCSBCSSEEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEEC
T ss_pred HhhcccCccccCCCCeECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcch
Confidence 4679999999999999997 999999999999999865 49999999998888764
No 25
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.15 E-value=1.7e-11 Score=99.29 Aligned_cols=54 Identities=15% Similarity=0.314 Sum_probs=46.1
Q ss_pred CCCCCCCCCCCCCCceeccCccccccHHHHHHHhhcC------CCCCCCCCC---CCcCCeee
Q 016213 335 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQY------KRCPVTLMP---ATVEQIRR 388 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~------~~CPv~~~~---~~~~~l~r 388 (393)
+...||||++.++||++++.|||+||..||.+|+.++ ..||+|+.+ ++.++|++
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~p 68 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQ 68 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEE
T ss_pred cEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcC
Confidence 5789999999999999985599999999999999875 389995544 77778764
No 26
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.15 E-value=1.8e-11 Score=116.21 Aligned_cols=53 Identities=23% Similarity=0.226 Sum_probs=48.1
Q ss_pred CCCCCCCCCCCCCCceeccCccccccHHHHHHHhhcCCC-CCCCCCCCCcCCeee
Q 016213 335 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKR-CPVTLMPATVEQIRR 388 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~~~-CPv~~~~~~~~~l~r 388 (393)
+...||||++.++||++++ |||+||..||.+|+.+++. ||+|+.+++.++|++
T Consensus 207 ~~~~c~i~~~~~~dPv~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~ 260 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIP 260 (281)
T ss_dssp STTBCTTTCSBCSSEEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEE
T ss_pred cccCCcCcCCHhcCCeECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcc
Confidence 4678999999999999998 9999999999999998654 999999999888775
No 27
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.14 E-value=2.6e-11 Score=100.24 Aligned_cols=50 Identities=22% Similarity=0.537 Sum_probs=45.3
Q ss_pred CCCCCCCCCCCCCCceeccCccccccHHHHHHHhhcCCCCCCCCCCCCcC
Q 016213 335 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVE 384 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~ 384 (393)
+...||||++.+.+|+++..|||+||+.||.+|++....||+|+.++...
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 46789999999999998744999999999999999999999999988754
No 28
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.14 E-value=1.8e-11 Score=105.75 Aligned_cols=47 Identities=19% Similarity=0.479 Sum_probs=43.2
Q ss_pred CCCCCCCCCCCCCceeccCccccccHHHHHHHhhcCCCCCCCCCCCCc
Q 016213 336 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATV 383 (393)
Q Consensus 336 ~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~ 383 (393)
...||||++.+.+|++++ |||+||..||.+|+..+..||+|+.++..
T Consensus 53 ~~~C~iC~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVTLN-CAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSSEEEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred cCCCcccCcccCCceECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 347999999999999987 99999999999999999999999998753
No 29
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.13 E-value=3.2e-11 Score=93.60 Aligned_cols=53 Identities=23% Similarity=0.458 Sum_probs=46.0
Q ss_pred CCCCCCCCCCCCCCce---eccCccccccHHHHHHHhhcCCCCCCCCCCCCcCCeee
Q 016213 335 DRTICPLCSQKRANPS---VVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRR 388 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~---~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~l~r 388 (393)
+...|+||++.+.++. +++ |||+||+.||.+|++.+..||+|+.+++.+++..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 69 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTAT 69 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCC
T ss_pred CCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcccCC
Confidence 4678999999998763 355 9999999999999999999999999998877654
No 30
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.13 E-value=2.2e-11 Score=102.97 Aligned_cols=57 Identities=18% Similarity=0.481 Sum_probs=52.4
Q ss_pred CCCCCCCCCCCCCCc-------eeccCccccccHHHHHHHhhcCCCCCCCCCCCCcCCeeeCccC
Q 016213 335 DRTICPLCSQKRANP-------SVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRRLFHD 392 (393)
Q Consensus 335 ~~~~CpiC~~~~~np-------~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~l~riy~~ 392 (393)
+...||||++.+++| ++++ |||+||..||.+|++++..||+|+.+++.++++++|.+
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i~ 69 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIG 69 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBCS
T ss_pred CCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccccccccccC
Confidence 567899999999998 6776 99999999999999999999999999999999998864
No 31
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.13 E-value=3.6e-11 Score=99.40 Aligned_cols=53 Identities=25% Similarity=0.575 Sum_probs=47.4
Q ss_pred CCCCCCCCCCCCCceeccCccccccHHHHHHHhhcCC---CCCCCCCCCCcCCeeeC
Q 016213 336 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYK---RCPVTLMPATVEQIRRL 389 (393)
Q Consensus 336 ~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~~---~CPv~~~~~~~~~l~ri 389 (393)
...||||.+.+.+|.+++ |||+||..||.+|+...+ .||+|+.+++.+++++.
T Consensus 21 ~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~ 76 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQES 76 (112)
T ss_dssp HTSCSSSCCCCSSCCBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCC
T ss_pred CCCCcccChhhcCeEECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCcc
Confidence 468999999999999986 999999999999999764 89999999988887654
No 32
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=4.9e-11 Score=88.82 Aligned_cols=43 Identities=28% Similarity=0.802 Sum_probs=38.7
Q ss_pred CCCCCCCCCCCCCCCceeccCccccccHHHHHHHhhc---CCCCCCC
Q 016213 334 PDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQ---YKRCPVT 377 (393)
Q Consensus 334 ~~~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~---~~~CPv~ 377 (393)
.+...||||++.+.+|++++ |||+||+.||.+|+++ ..+||+|
T Consensus 18 ~~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSCEECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCeEEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 35789999999999999986 9999999999999984 4689998
No 33
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=1.7e-11 Score=93.18 Aligned_cols=56 Identities=23% Similarity=0.486 Sum_probs=48.0
Q ss_pred CCCCCCCCCCCCCCCceeccCccccccHHHHHHHhhcCCCCCCCCCCCCcCCeeeCcc
Q 016213 334 PDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRRLFH 391 (393)
Q Consensus 334 ~~~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~l~riy~ 391 (393)
.+...||||++.+.+ ++++ |||+||+.||.+|++.+..||+|+.++...+...++.
T Consensus 13 ~~~~~C~IC~~~~~~-~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 68 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGANESSGPS 68 (70)
T ss_dssp CCCCCCSSSCCSCCS-EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCCCCCC
T ss_pred CCCCCCeeCCcCccC-cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCCccccCC
Confidence 356789999999999 6666 9999999999999999999999999988766555443
No 34
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.12 E-value=4.2e-11 Score=86.63 Aligned_cols=48 Identities=17% Similarity=0.459 Sum_probs=42.3
Q ss_pred CCCCCCCCCCCCCC---ceeccCccccccHHHHHHHhhcCCCCCCCCCCCC
Q 016213 335 DRTICPLCSQKRAN---PSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPAT 382 (393)
Q Consensus 335 ~~~~CpiC~~~~~n---p~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~ 382 (393)
+...|+||++.+.+ +.+++.|||+||..||.+|++.+..||+|+.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 46789999999888 5666559999999999999999999999998765
No 35
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.11 E-value=5.2e-11 Score=85.99 Aligned_cols=47 Identities=21% Similarity=0.540 Sum_probs=41.1
Q ss_pred CCCCCCCCCCCCCC----ceeccCccccccHHHHHHHhhcCCCCCCCCCCCC
Q 016213 335 DRTICPLCSQKRAN----PSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPAT 382 (393)
Q Consensus 335 ~~~~CpiC~~~~~n----p~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~ 382 (393)
+...||||++.+.+ +.+++ |||+||..||.+|++.+..||+|+.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 46789999999876 45565 9999999999999999999999998764
No 36
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.10 E-value=3.6e-11 Score=101.07 Aligned_cols=54 Identities=26% Similarity=0.502 Sum_probs=48.2
Q ss_pred CCCCCCCCCCCCCCCceeccCccccccHHHHHHHhhcCC-CCCCCCCCCCcCCeee
Q 016213 334 PDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYK-RCPVTLMPATVEQIRR 388 (393)
Q Consensus 334 ~~~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~~-~CPv~~~~~~~~~l~r 388 (393)
.+...||||++.+.+|++++ |||+||+.||.+|++..+ .||+|+.+++.+++.+
T Consensus 16 ~~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 70 (118)
T 3hct_A 16 ESKYECPICLMALREAVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFP 70 (118)
T ss_dssp CGGGBCTTTCSBCSSEEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEE
T ss_pred CCCCCCCcCChhhcCeEECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhccc
Confidence 35679999999999999886 999999999999999876 9999999998877654
No 37
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.09 E-value=5.1e-11 Score=100.82 Aligned_cols=51 Identities=14% Similarity=0.279 Sum_probs=44.6
Q ss_pred CCCCCCCCCCCCCCceeccCccccccHHHHHHHhhcCC-CCCCCCCCCCc-CCe
Q 016213 335 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYK-RCPVTLMPATV-EQI 386 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~~-~CPv~~~~~~~-~~l 386 (393)
+...||||++.+.+|++++ |||+||..||.+|+..++ .||+|+.+++. .++
T Consensus 51 ~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~ 103 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAM 103 (124)
T ss_dssp HHTBCTTTSSBCSSEEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCC
T ss_pred cCCCCCcCChHHcCcEEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCC
Confidence 3568999999999999986 999999999999998655 99999999876 444
No 38
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.09 E-value=6.6e-11 Score=89.17 Aligned_cols=54 Identities=26% Similarity=0.581 Sum_probs=48.4
Q ss_pred CCCCCCCCCCCCCCceec--cCcccc-ccHHHHHHHhhcCCCCCCCCCCCCcCCeeeCcc
Q 016213 335 DRTICPLCSQKRANPSVV--TVSGFV-FCYACIFKYVSQYKRCPVTLMPATVEQIRRLFH 391 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~--~~~G~v-fCy~Ci~~~~~~~~~CPv~~~~~~~~~l~riy~ 391 (393)
+...|+||++...|++++ + |||+ ||+.|+.+|.+++++||+|+.++ +++++||.
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i--~~~i~i~~ 63 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPI--QMIVLTYF 63 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCC--CEEEEEEC
T ss_pred CcCCCCcCCCCCCCEEEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcch--hceEeeec
Confidence 467899999999999876 6 9999 89999999999999999999876 57889885
No 39
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=9.8e-11 Score=85.37 Aligned_cols=43 Identities=28% Similarity=0.676 Sum_probs=38.2
Q ss_pred CCCCCCCCCCCCCCCceeccCccccccHHHHHHHhh---cCCCCCCC
Q 016213 334 PDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVS---QYKRCPVT 377 (393)
Q Consensus 334 ~~~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~---~~~~CPv~ 377 (393)
.+...||||++.+.+|.+++ |||+||..||.+|+. .+..||+|
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCCCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCccEeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 35779999999999999987 999999999999954 56899998
No 40
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.05 E-value=2e-10 Score=87.01 Aligned_cols=48 Identities=15% Similarity=0.410 Sum_probs=41.1
Q ss_pred CCCCCCCCCCCCCC---ceeccCccccccHHHHHHHhhcCCCCCCCCCCCCc
Q 016213 335 DRTICPLCSQKRAN---PSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATV 383 (393)
Q Consensus 335 ~~~~CpiC~~~~~n---p~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~ 383 (393)
+...|+||++.+.+ +.+++ |||+||..||.+|++.++.||+|+.++..
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 46789999998753 35565 99999999999999999999999988754
No 41
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.05 E-value=6.2e-11 Score=100.22 Aligned_cols=56 Identities=18% Similarity=0.489 Sum_probs=51.5
Q ss_pred CCCCCCCCCCCCCCc-------eeccCccccccHHHHHHHhhcCCCCCCCCCCCCcCCeeeCcc
Q 016213 335 DRTICPLCSQKRANP-------SVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRRLFH 391 (393)
Q Consensus 335 ~~~~CpiC~~~~~np-------~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~l~riy~ 391 (393)
+...|+||++.+.++ +.++ |||+||..||.+|++.++.||+|+.++..++++++|.
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 133 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 133 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEEEECC
T ss_pred CCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChhcceeeeC
Confidence 567899999999887 5665 9999999999999999999999999999999999984
No 42
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=1.7e-10 Score=88.49 Aligned_cols=47 Identities=21% Similarity=0.504 Sum_probs=41.3
Q ss_pred CCCCCCCCCCCCCCcee---ccCccccccHHHHHHHhhcCCCCCCCCCCCC
Q 016213 335 DRTICPLCSQKRANPSV---VTVSGFVFCYACIFKYVSQYKRCPVTLMPAT 382 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~---~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~ 382 (393)
+...|+||++.+.++.. ++ |||+||+.||.+|++.+..||+|+.++.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVL 63 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCS
T ss_pred CCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCcccc
Confidence 46789999999988743 35 9999999999999999999999998764
No 43
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.05 E-value=1e-10 Score=103.81 Aligned_cols=48 Identities=23% Similarity=0.492 Sum_probs=43.0
Q ss_pred CCCCCCCCCCCCCceeccCccccccHHHHHHHhhc-CCCCCCCCCCCCc
Q 016213 336 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQ-YKRCPVTLMPATV 383 (393)
Q Consensus 336 ~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~-~~~CPv~~~~~~~ 383 (393)
...||||++.+.+|+++..|||+||..||.+|+.. +..||+|+.++..
T Consensus 54 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 45899999999999887459999999999999997 7889999999853
No 44
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.04 E-value=6.3e-11 Score=91.40 Aligned_cols=49 Identities=18% Similarity=0.473 Sum_probs=43.2
Q ss_pred CCCCCCCCCCCCCCc---eeccCccccccHHHHHHHhhcCCCCCCCCCCCCcC
Q 016213 335 DRTICPLCSQKRANP---SVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVE 384 (393)
Q Consensus 335 ~~~~CpiC~~~~~np---~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~ 384 (393)
+...|+||++.+.++ .+++ |||+||..||.+|++.+..||+|+.+++..
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 467899999998887 5666 999999999999999999999999887653
No 45
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.04 E-value=1e-10 Score=87.81 Aligned_cols=54 Identities=17% Similarity=0.515 Sum_probs=47.9
Q ss_pred CCCCCCCCCCCCCCceec--cCcccc-ccHHHHHHHhhcCCCCCCCCCCCCcCCeeeCcc
Q 016213 335 DRTICPLCSQKRANPSVV--TVSGFV-FCYACIFKYVSQYKRCPVTLMPATVEQIRRLFH 391 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~--~~~G~v-fCy~Ci~~~~~~~~~CPv~~~~~~~~~l~riy~ 391 (393)
+...|+||++..+|++++ + |||+ ||+.|+.++.+..++||+|+.++ +++++||.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i--~~~i~i~~ 62 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEI--QLVIKVFI 62 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBC--CEEEEEEE
T ss_pred cCCCCcccCCcCCCeEEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchh--hceEEEec
Confidence 356899999999999876 6 9998 99999999999889999999876 57888884
No 46
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.04 E-value=1.2e-10 Score=102.34 Aligned_cols=49 Identities=14% Similarity=0.313 Sum_probs=44.4
Q ss_pred CCCCCCCCCCCCCCceeccCccccccHHHHHHHhhcCC-CCCCCCCCCCcC
Q 016213 335 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYK-RCPVTLMPATVE 384 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~~-~CPv~~~~~~~~ 384 (393)
+...||||++.+.+|++++ |||+||..||.+|+.... .||+|+.+++..
T Consensus 77 ~~~~C~IC~~~~~~pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSEEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCCEEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 3568999999999999986 999999999999999765 899999998876
No 47
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.03 E-value=1.2e-10 Score=97.37 Aligned_cols=54 Identities=20% Similarity=0.514 Sum_probs=48.2
Q ss_pred CCCCCCCCCCCCCCceeccCccccccHHHHHHHhhc-CCCCCCCCCCCCcCCeeeC
Q 016213 335 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQ-YKRCPVTLMPATVEQIRRL 389 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~-~~~CPv~~~~~~~~~l~ri 389 (393)
+...||||.+.+.+|++++ |||+||..||.+|++. ...||+|+.+++.+++++.
T Consensus 22 ~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 76 (116)
T 1rmd_A 22 KSISCQICEHILADPVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESP 76 (116)
T ss_dssp HHTBCTTTCSBCSSEEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCC
T ss_pred CCCCCCCCCcHhcCcEEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhcccc
Confidence 3578999999999999986 9999999999999998 6799999999988877643
No 48
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=2e-10 Score=90.35 Aligned_cols=53 Identities=23% Similarity=0.448 Sum_probs=44.8
Q ss_pred CCCCCCCCCCCCCC--------------ceeccCccccccHHHHHHHhhcCCCCCCCCCCCCcCCee
Q 016213 335 DRTICPLCSQKRAN--------------PSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIR 387 (393)
Q Consensus 335 ~~~~CpiC~~~~~n--------------p~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~l~ 387 (393)
+...|+||++.+.+ +.+++.|||+||..||.+|++.++.||+|+.++..+++-
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~~g 80 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIG 80 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEEEEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchhhcC
Confidence 35679999999877 345556999999999999999999999999998876653
No 49
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.99 E-value=1.6e-10 Score=92.81 Aligned_cols=47 Identities=17% Similarity=0.463 Sum_probs=41.7
Q ss_pred CCCCCCCCCCCCCC---ceeccCccccccHHHHHHHhhcCCCCCCCCCCCC
Q 016213 335 DRTICPLCSQKRAN---PSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPAT 382 (393)
Q Consensus 335 ~~~~CpiC~~~~~n---p~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~ 382 (393)
+...|+||++.+.+ +.+++ |||+||..||.+|++.++.||+|+.++.
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 46789999998877 56676 9999999999999999999999998765
No 50
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.97 E-value=1.2e-10 Score=97.63 Aligned_cols=52 Identities=21% Similarity=0.563 Sum_probs=45.8
Q ss_pred CCCCCCCCCCCCCCceeccCccccccHHHHHHHhhcCCCCCCCCCCCCcCCeee
Q 016213 335 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRR 388 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~l~r 388 (393)
+...||||++.+.+|+++..|||+||..||.+|+. ..||+|+.++...+++.
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~~ 72 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLKI 72 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCCC
T ss_pred hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccccccc
Confidence 46789999999999999834999999999999998 88999999987766653
No 51
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.93 E-value=1.7e-10 Score=100.41 Aligned_cols=49 Identities=16% Similarity=0.431 Sum_probs=43.3
Q ss_pred CCCCCCCCCCCCCCCceeccCccccccHHHHHHHhhcCC-CCCCCCCCCCc
Q 016213 334 PDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYK-RCPVTLMPATV 383 (393)
Q Consensus 334 ~~~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~~-~CPv~~~~~~~ 383 (393)
.+...||||.+.+.+|+.++ |||+||..||.+|++..+ .||+|+.++..
T Consensus 29 ~~~~~C~IC~~~~~~pv~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp CGGGBCTTTCSBCSSEEECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred CcCcCCCCCChhhcCcEECC-CCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 46789999999999998876 999999999999998765 89999987643
No 52
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.92 E-value=5e-10 Score=112.18 Aligned_cols=53 Identities=13% Similarity=0.447 Sum_probs=47.6
Q ss_pred CCCCCCCCCCCCCceeccCccccccHHHHHHHhh-cCCCCCCCCCCCCcCCeeeC
Q 016213 336 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVS-QYKRCPVTLMPATVEQIRRL 389 (393)
Q Consensus 336 ~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~-~~~~CPv~~~~~~~~~l~ri 389 (393)
...|+||++...+|++++ |||+||..||.+|++ .+..||+|+.++...+++.+
T Consensus 332 ~~~C~ICle~~~~pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~v 385 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIVV 385 (389)
T ss_dssp SSBCTTTSSSBCCEEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEECSC
T ss_pred CCCCCccCcCCCCeEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCceeEec
Confidence 468999999999999987 999999999999999 67899999999887766654
No 53
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.91 E-value=2.4e-10 Score=95.30 Aligned_cols=47 Identities=17% Similarity=0.446 Sum_probs=42.8
Q ss_pred CCCCCCCCCCCCCCceeccCccccccHHHHHHHhhc-CCCCCCCCCCCC
Q 016213 335 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQ-YKRCPVTLMPAT 382 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~-~~~CPv~~~~~~ 382 (393)
+...||||++.+.+|++++ |||+||..||.+|+.. +..||+|+.+++
T Consensus 14 ~~~~C~iC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 14 SECQCGICMEILVEPVTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHBCTTTCSBCSSCEECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCccCCcccCceeEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 4678999999999999996 9999999999999987 578999999875
No 54
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.91 E-value=9e-10 Score=104.55 Aligned_cols=54 Identities=20% Similarity=0.407 Sum_probs=47.5
Q ss_pred CCCCCCCCCCCCCCceeccCccccccHHHHHHHhhcC--CCCCC--CCCCCCcCCeee
Q 016213 335 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQY--KRCPV--TLMPATVEQIRR 388 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~--~~CPv--~~~~~~~~~l~r 388 (393)
...+||||++.+++|+.+..|||+||..||.+|++++ ..||+ |+.+++.++|+.
T Consensus 180 ~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~p 237 (267)
T 3htk_C 180 IELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVR 237 (267)
T ss_dssp CCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEE
T ss_pred eeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCc
Confidence 5789999999999999864599999999999999875 47999 989998888764
No 55
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.85 E-value=7.3e-10 Score=81.00 Aligned_cols=46 Identities=17% Similarity=0.461 Sum_probs=40.5
Q ss_pred CCCCCCCCCCCCCCceeccCccccccHHHHHHHhhcCCCCCCCCCCCCcC
Q 016213 335 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVE 384 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~ 384 (393)
+...|+||++...+|.+++ |||+||..||.+ ....||+|+.+++..
T Consensus 5 ~~~~C~IC~~~~~~p~~l~-CgH~fC~~Ci~~---~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLP-CLHTLCSGCLEA---SGMQCPICQAPWPLG 50 (56)
T ss_dssp CCSSCSSSCSSCBCCSCST-TSCCSBTTTCSS---SSSSCSSCCSSSSCC
T ss_pred cCCCceEeCCccCCeEEcC-CCCcccHHHHcc---CCCCCCcCCcEeecC
Confidence 5678999999999999987 999999999987 467899999988654
No 56
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.85 E-value=1e-09 Score=91.19 Aligned_cols=46 Identities=20% Similarity=0.356 Sum_probs=38.3
Q ss_pred CCCCCCCCCCCCCce------------------eccCccccccHHHHHHHhh-----cCCCCCCCCCCCC
Q 016213 336 RTICPLCSQKRANPS------------------VVTVSGFVFCYACIFKYVS-----QYKRCPVTLMPAT 382 (393)
Q Consensus 336 ~~~CpiC~~~~~np~------------------~~~~~G~vfCy~Ci~~~~~-----~~~~CPv~~~~~~ 382 (393)
...||||++.+.+|. ++ .|||+||..||.+|+. .+..||+|+....
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLT-KCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEES-SSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecC-CCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 458999999997764 44 4999999999999994 5679999997764
No 57
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.85 E-value=2.5e-09 Score=83.83 Aligned_cols=53 Identities=21% Similarity=0.494 Sum_probs=42.1
Q ss_pred CCCCCCCCCCCCC--Cceecc-CccccccHHHHHHHhhc-CCCCCCCCCCCCcCCee
Q 016213 335 DRTICPLCSQKRA--NPSVVT-VSGFVFCYACIFKYVSQ-YKRCPVTLMPATVEQIR 387 (393)
Q Consensus 335 ~~~~CpiC~~~~~--np~~~~-~~G~vfCy~Ci~~~~~~-~~~CPv~~~~~~~~~l~ 387 (393)
+...||||++++. ++.+.+ +|||.||..|+.++.++ ++.||+|+.+.+..++.
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSC
T ss_pred cCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchh
Confidence 5678999999885 344432 39999999999999854 57999999998776654
No 58
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.84 E-value=1.3e-09 Score=96.90 Aligned_cols=54 Identities=26% Similarity=0.502 Sum_probs=47.9
Q ss_pred CCCCCCCCCCCCCCCceeccCccccccHHHHHHHhhcCC-CCCCCCCCCCcCCeee
Q 016213 334 PDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYK-RCPVTLMPATVEQIRR 388 (393)
Q Consensus 334 ~~~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~~-~CPv~~~~~~~~~l~r 388 (393)
.+...||||++.+.+|+.++ |||+||..||.+|++..+ +||+|+.+++.+++.+
T Consensus 16 ~~~~~C~IC~~~~~~pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 70 (170)
T 3hcs_A 16 ESKYECPICLMALREAVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFP 70 (170)
T ss_dssp CGGGBCTTTCSBCSSEEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEE
T ss_pred CCCCCCCCCChhhcCcEECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhh
Confidence 35789999999999998886 999999999999998754 9999999998877654
No 59
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.80 E-value=1.9e-09 Score=83.23 Aligned_cols=49 Identities=18% Similarity=0.520 Sum_probs=43.0
Q ss_pred CCCCCCCCCCCCCceeccCcccc-ccHHHHHHHhhcCCCCCCCCCCCCcCCeeeCcc
Q 016213 336 RTICPLCSQKRANPSVVTVSGFV-FCYACIFKYVSQYKRCPVTLMPATVEQIRRLFH 391 (393)
Q Consensus 336 ~~~CpiC~~~~~np~~~~~~G~v-fCy~Ci~~~~~~~~~CPv~~~~~~~~~l~riy~ 391 (393)
...|+||++...+|+.++ |||+ ||..|+.+| ..||+|+.+++ +.++||.
T Consensus 24 ~~~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~--~~~~i~~ 73 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVFVP-CGHLVTCKQCAEAV----DKCPMCYTVIT--FKQKILM 73 (74)
T ss_dssp HTBCTTTSSSBCCEEEET-TCCBCCCHHHHTTC----SBCTTTCCBCS--EEEECBC
T ss_pred CCCCCCCCCCCCCEEEcC-CCChhHHHHhhhcC----ccCCCcCcCcc--CcEEEee
Confidence 578999999999999987 9999 999999987 89999997654 5677774
No 60
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=6.8e-09 Score=80.23 Aligned_cols=49 Identities=20% Similarity=0.555 Sum_probs=41.5
Q ss_pred CCCCCCCCCCCCCceeccCcccc-ccHHHHHHHhhcCCCCCCCCCCCCcCCeeeCcc
Q 016213 336 RTICPLCSQKRANPSVVTVSGFV-FCYACIFKYVSQYKRCPVTLMPATVEQIRRLFH 391 (393)
Q Consensus 336 ~~~CpiC~~~~~np~~~~~~G~v-fCy~Ci~~~~~~~~~CPv~~~~~~~~~l~riy~ 391 (393)
...|+||++...+|+.++ |||+ ||..|+. +..+||+|+.+++ +.++||.
T Consensus 25 ~~~C~IC~~~~~~~~~~p-CgH~~~C~~C~~----~~~~CP~Cr~~i~--~~~~i~~ 74 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVP-CGHLVTCKQCAE----AVDKCPMCYTVIT--FKQKIFM 74 (75)
T ss_dssp HHSCSSSCSSCCCBCCSS-SCCCCBCHHHHH----HCSBCTTTCCBCC--CCCBCCC
T ss_pred CCCCCcCCCCCCCEEEec-CCCHHHHHHHhh----CCCCCccCCceec--CcEEEec
Confidence 568999999999999987 9999 9999995 4589999998764 4677774
No 61
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.72 E-value=6.6e-09 Score=86.13 Aligned_cols=50 Identities=16% Similarity=0.391 Sum_probs=42.1
Q ss_pred CCCCCCCCCCCCCCc-----------------eeccCccccccHHHHHHHhhcCCCCCCCCCCCCcC
Q 016213 335 DRTICPLCSQKRANP-----------------SVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVE 384 (393)
Q Consensus 335 ~~~~CpiC~~~~~np-----------------~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~ 384 (393)
+...|+||++.+.++ .++..|||+||..||.+|++.+..||+|+.+....
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~ 102 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQ 102 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCEE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcceee
Confidence 357899999999876 23345999999999999999999999999886544
No 62
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=2e-08 Score=76.41 Aligned_cols=51 Identities=16% Similarity=0.395 Sum_probs=43.9
Q ss_pred CCCCCCCCCCCCCCceeccCcccc-ccHHHHHHHhhcCCCCCCCCCCCCcCCeeeCccC
Q 016213 335 DRTICPLCSQKRANPSVVTVSGFV-FCYACIFKYVSQYKRCPVTLMPATVEQIRRLFHD 392 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~~~G~v-fCy~Ci~~~~~~~~~CPv~~~~~~~~~l~riy~~ 392 (393)
+...|+||++...|+++++ |||+ ||..|+.. ..+||+|+.++ .+.++||.+
T Consensus 14 ~~~~C~IC~~~~~~~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i--~~~~~i~~~ 65 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNWVLLP-CRHTCLCDGCVKY----FQQCPMCRQFV--QESFALSGP 65 (68)
T ss_dssp CSSCCSSSSSSCCCCEETT-TTBCCSCTTHHHH----CSSCTTTCCCC--CCEECCCSS
T ss_pred CCCCCCCcCcCCCCEEEEC-CCChhhhHHHHhc----CCCCCCCCcch--hceEEeecC
Confidence 5678999999999999987 9999 99999983 58999999755 457888865
No 63
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.61 E-value=1.9e-08 Score=78.78 Aligned_cols=50 Identities=18% Similarity=0.584 Sum_probs=42.6
Q ss_pred CCCCCCCCCCCCCceeccCcccc-ccHHHHHHHhhcCCCCCCCCCCCCcCCeeeCccC
Q 016213 336 RTICPLCSQKRANPSVVTVSGFV-FCYACIFKYVSQYKRCPVTLMPATVEQIRRLFHD 392 (393)
Q Consensus 336 ~~~CpiC~~~~~np~~~~~~G~v-fCy~Ci~~~~~~~~~CPv~~~~~~~~~l~riy~~ 392 (393)
...|+||++...+++.++ |||+ ||..|+..+ ..||+|+.+++ ..++||.+
T Consensus 18 ~~~C~IC~~~~~~~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~--~~~~i~~p 68 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCP-CGHTVCCESCAAQL----QSCPVCRSRVE--HVQHVYLP 68 (79)
T ss_dssp HTBCTTTSSSBCCEEEET-TCBCCBCHHHHTTC----SBCTTTCCBCC--EEEECBCT
T ss_pred CCEeEEeCcccCcEEEEC-CCCHHHHHHHHHhc----CcCCCCCchhh--CeEEEEeC
Confidence 568999999999999987 9999 999999865 59999997654 46788764
No 64
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.54 E-value=9.8e-09 Score=86.56 Aligned_cols=50 Identities=16% Similarity=0.428 Sum_probs=0.5
Q ss_pred CCCCCCCCCCCCCce-----------------eccCccccccHHHHHHHhhcCCCCCCCCCCCCcCC
Q 016213 336 RTICPLCSQKRANPS-----------------VVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQ 385 (393)
Q Consensus 336 ~~~CpiC~~~~~np~-----------------~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~ 385 (393)
...|+||++.+.+++ +..+|||+||..||.+|++.+..||+|+.+.....
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~~k 114 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQK 114 (117)
T ss_dssp C------------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeeeec
Confidence 468999999998753 22359999999999999999999999998865543
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.38 E-value=6e-08 Score=77.96 Aligned_cols=55 Identities=20% Similarity=0.419 Sum_probs=43.3
Q ss_pred CCCCCCCCCCCCCCceec--cCccccccHHHHHHHhhc--------CCCCCC--CCCC--CCcCCeeeC
Q 016213 335 DRTICPLCSQKRANPSVV--TVSGFVFCYACIFKYVSQ--------YKRCPV--TLMP--ATVEQIRRL 389 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~--~~~G~vfCy~Ci~~~~~~--------~~~CPv--~~~~--~~~~~l~ri 389 (393)
+...||||.+...+|.++ ..|||.||..|+.+|++. .-+||. |+.. ++.+++.++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~~l 72 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECM 72 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHHHH
Confidence 456899999999888654 249999999999999974 137999 9998 666555543
No 66
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.35 E-value=1e-07 Score=94.46 Aligned_cols=50 Identities=20% Similarity=0.537 Sum_probs=42.9
Q ss_pred CCCCCCCCCCCCCCceeccCcccc-ccHHHHHHHhhcCCCCCCCCCCCCcCCeeeCcc
Q 016213 335 DRTICPLCSQKRANPSVVTVSGFV-FCYACIFKYVSQYKRCPVTLMPATVEQIRRLFH 391 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~~~G~v-fCy~Ci~~~~~~~~~CPv~~~~~~~~~l~riy~ 391 (393)
+...|+||++...+|+.++ |||+ ||..|+..| ..||+|+.++ ...++||.
T Consensus 294 ~~~~C~IC~~~~~~~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i--~~~~~i~~ 344 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIP-CGHLVVCQECAPSL----RKCPICRGII--KGTVRTFL 344 (345)
T ss_dssp TTCBCTTTSSSBCCEEEET-TCCEEECTTTGGGC----SBCTTTCCBC--CEEEECC-
T ss_pred CCCCCCccCCcCCceEEcC-CCChhHhHHHHhcC----CcCCCCCCCc--cCeEEeec
Confidence 4678999999999999997 9999 999999877 7999999765 46677774
No 67
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.27 E-value=4.2e-07 Score=73.80 Aligned_cols=44 Identities=25% Similarity=0.515 Sum_probs=38.5
Q ss_pred CCCCCCCCCCCc-eeccCccccccHHHHHHHhhc-CCCCCCCCCCCC
Q 016213 338 ICPLCSQKRANP-SVVTVSGFVFCYACIFKYVSQ-YKRCPVTLMPAT 382 (393)
Q Consensus 338 ~CpiC~~~~~np-~~~~~~G~vfCy~Ci~~~~~~-~~~CPv~~~~~~ 382 (393)
.|++|.-++..= .+++ |+|||||.|+..|.++ .+.||+|+.++.
T Consensus 3 fC~~C~~Pi~iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSEEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeEEEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 599999999885 5776 9999999999999865 689999998874
No 68
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=1.4e-06 Score=68.40 Aligned_cols=51 Identities=16% Similarity=0.430 Sum_probs=40.8
Q ss_pred CCCCCCCCCCCCC--CCceeccCcc-----ccccHHHHHHHhhcCC--CCCCCCCCCCcCC
Q 016213 334 PDRTICPLCSQKR--ANPSVVTVSG-----FVFCYACIFKYVSQYK--RCPVTLMPATVEQ 385 (393)
Q Consensus 334 ~~~~~CpiC~~~~--~np~~~~~~G-----~vfCy~Ci~~~~~~~~--~CPv~~~~~~~~~ 385 (393)
.+...|+||++.. .++.+++ |+ |.|...||.+|+..++ .||+|+.+...+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCeEcCccccCCCeeEec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 3567899999875 4566654 85 9999999999999864 8999999886543
No 69
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.02 E-value=6.2e-06 Score=63.80 Aligned_cols=49 Identities=20% Similarity=0.381 Sum_probs=42.1
Q ss_pred CCCCCCCCCCCCCCCceeccCccccccHHHHHHHhhcC--CCCCCCCCCCC
Q 016213 334 PDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQY--KRCPVTLMPAT 382 (393)
Q Consensus 334 ~~~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~--~~CPv~~~~~~ 382 (393)
.....|.||.+.+..-..+..|||.|-..||.+|++.+ ..||+|+.+..
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 34578999999998655676799999999999999987 89999998754
No 70
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=97.28 E-value=0.00014 Score=80.01 Aligned_cols=53 Identities=17% Similarity=0.224 Sum_probs=49.5
Q ss_pred CCCCCCCCCCCCCCceeccCcc-ccccHHHHHHHhhcCCCCCCCCCCCCcCCeee
Q 016213 335 DRTICPLCSQKRANPSVVTVSG-FVFCYACIFKYVSQYKRCPVTLMPATVEQIRR 388 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~~~G-~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~l~r 388 (393)
+...|||.++.++||++++ +| +.|-..+|.+|+..++.||+|+.|++.++|+.
T Consensus 890 ~~F~cPIs~~lM~DPVilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liP 943 (968)
T 3m62_A 890 DEFLDPLMYTIMKDPVILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTP 943 (968)
T ss_dssp GGGBCTTTCSBCSSEEECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEE
T ss_pred HHhCCcchhhHHhCCeEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccc
Confidence 6899999999999999998 76 68999999999999999999999999988875
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.16 E-value=0.00016 Score=71.11 Aligned_cols=49 Identities=14% Similarity=0.362 Sum_probs=39.3
Q ss_pred CCCCCCCCCCCCCC----ce-ec--cCccccccHHHHHHHhhcC-----------CCCCCCCCCCCc
Q 016213 335 DRTICPLCSQKRAN----PS-VV--TVSGFVFCYACIFKYVSQY-----------KRCPVTLMPATV 383 (393)
Q Consensus 335 ~~~~CpiC~~~~~n----p~-~~--~~~G~vfCy~Ci~~~~~~~-----------~~CPv~~~~~~~ 383 (393)
....|+||...+.+ |. +| ++|||.|...|+++|++.. |.||.|+.+++.
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 46789999998776 31 23 3699999999999999853 689999998763
No 72
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.34 E-value=0.0026 Score=46.84 Aligned_cols=48 Identities=15% Similarity=0.363 Sum_probs=36.1
Q ss_pred CCCCCCCCCCCCCCceeccCcc-----ccccHHHHHHHhhc--CCCCCCCCCCCCc
Q 016213 335 DRTICPLCSQKRANPSVVTVSG-----FVFCYACIFKYVSQ--YKRCPVTLMPATV 383 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~~~G-----~vfCy~Ci~~~~~~--~~~CPv~~~~~~~ 383 (393)
+...|.||+....++-+.+ |. ..|-..|+.+|+.. +..||+|+.+..+
T Consensus 5 ~~~~CrIC~~~~~~~l~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEECSCCCCCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCCCCceecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 4568999988765554443 43 38889999999975 5789999987643
No 73
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.27 E-value=0.0035 Score=58.75 Aligned_cols=47 Identities=21% Similarity=0.406 Sum_probs=40.7
Q ss_pred CCCCCCCCCCCCceeccCccccccHHHHHHHhhcCC--CCCCCCCCCCc
Q 016213 337 TICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYK--RCPVTLMPATV 383 (393)
Q Consensus 337 ~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~~--~CPv~~~~~~~ 383 (393)
..|.+|.+.+.--..|+.||+.|-..|+.+|++.++ +||.|+.+-..
T Consensus 181 ~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 181 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 379999999987777888999999999999998765 99999987543
No 74
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=95.08 E-value=0.029 Score=43.56 Aligned_cols=35 Identities=17% Similarity=0.587 Sum_probs=28.7
Q ss_pred CCCCCCCCCCCCCcee---ccCccccccHHHHHHHhhc
Q 016213 336 RTICPLCSQKRANPSV---VTVSGFVFCYACIFKYVSQ 370 (393)
Q Consensus 336 ~~~CpiC~~~~~np~~---~~~~G~vfCy~Ci~~~~~~ 370 (393)
...|.+|.+.+.|-.. -++.+|-||++|-..+++.
T Consensus 15 ~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred eeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 4679999999998732 2346999999999999985
No 75
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=93.03 E-value=0.079 Score=52.49 Aligned_cols=52 Identities=19% Similarity=0.401 Sum_probs=40.5
Q ss_pred CCCCCCCCCCCCCceeccCccccccHHH--HHHHhhc--CCCCCCCCCCCCcCCee
Q 016213 336 RTICPLCSQKRANPSVVTVSGFVFCYAC--IFKYVSQ--YKRCPVTLMPATVEQIR 387 (393)
Q Consensus 336 ~~~CpiC~~~~~np~~~~~~G~vfCy~C--i~~~~~~--~~~CPv~~~~~~~~~l~ 387 (393)
+..||+....++.|+=-..|-|+-|++- ..+..++ .-+||||++.+..++|+
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ 304 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLA 304 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEE
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHee
Confidence 5689999999999986556999977755 3333333 35899999999988875
No 76
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=92.34 E-value=0.11 Score=51.25 Aligned_cols=51 Identities=22% Similarity=0.412 Sum_probs=40.2
Q ss_pred CCCCCCCCCCCCCceeccCccccccHHHHHHHhh---c--CCCCCCCCCCCCcCCee
Q 016213 336 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVS---Q--YKRCPVTLMPATVEQIR 387 (393)
Q Consensus 336 ~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~---~--~~~CPv~~~~~~~~~l~ 387 (393)
+..||+....++.|+=-..|-|+-|++-. .|+. + .-+||||++.+..++|+
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~-sfL~~~~~~~~W~CPiC~k~~~~~dL~ 270 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAA-LYLQMNEKKPTWICPVCDKKAAYESLI 270 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEHH-HHHHHHHHSCCCBCTTTCSBCCGGGEE
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCHH-HHHHHHhhCCCeECCCCCcccCHHHeE
Confidence 56899999999999865569999777543 3443 3 35899999999988876
No 77
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=90.20 E-value=0.17 Score=40.14 Aligned_cols=30 Identities=23% Similarity=0.686 Sum_probs=24.2
Q ss_pred CCCCCCCCCC-CCCcee--ccCccccccHHHHHH
Q 016213 336 RTICPLCSQK-RANPSV--VTVSGFVFCYACIFK 366 (393)
Q Consensus 336 ~~~CpiC~~~-~~np~~--~~~~G~vfCy~Ci~~ 366 (393)
...|++|.+. .++|+. +. |||-||..|+..
T Consensus 3 e~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~ 35 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKA 35 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCc-CChHHhHHHCHH
Confidence 4679999976 455654 54 999999999997
No 78
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=89.96 E-value=0.14 Score=40.90 Aligned_cols=45 Identities=24% Similarity=0.600 Sum_probs=37.9
Q ss_pred CCCCCCCCCCCCCceeccCccccccHHHHHHHhhcCCCCCCCCCCCC
Q 016213 336 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPAT 382 (393)
Q Consensus 336 ~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~ 382 (393)
...|-.|-..-++ .+..+-|..|..|+.--+....+||+|++++-
T Consensus 28 ~~nCKsCWf~~k~--LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLP 72 (99)
T 2ko5_A 28 PQFCKSCWFENKG--LVECNNHYLCLNCLTLLLSVSNRCPICKMPLP 72 (99)
T ss_dssp CCCCCSSCSCCSS--EEECSSCEEEHHHHHHTCSSSSEETTTTEECC
T ss_pred cccChhhccccCC--eeeecchhhHHHHHHHHHhhccCCcccCCcCC
Confidence 5679999887664 44458999999999999999999999998763
No 79
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=89.87 E-value=0.041 Score=53.42 Aligned_cols=46 Identities=20% Similarity=0.496 Sum_probs=36.7
Q ss_pred CCCCCCCCCCCCCCceecc---Ccc--ccccHHHHHHHhhcCCCCCCCCCC
Q 016213 335 DRTICPLCSQKRANPSVVT---VSG--FVFCYACIFKYVSQYKRCPVTLMP 380 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~---~~G--~vfCy~Ci~~~~~~~~~CPv~~~~ 380 (393)
..+.||+|+....-..+.. ..| |.+|--|-++|--...+||.|+..
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 4679999999876554431 245 799999999999888999999975
No 80
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=85.24 E-value=0.047 Score=43.82 Aligned_cols=41 Identities=22% Similarity=0.398 Sum_probs=31.9
Q ss_pred CCCCCCCCCCCCCceeccCccccccHHHHHHHhhcCCCCCCCCCCCC
Q 016213 336 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPAT 382 (393)
Q Consensus 336 ~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~ 382 (393)
...||.|.+++.- ..|+.+|-.|-.+| .....||-|+.++.
T Consensus 32 ~~~CP~Cq~eL~~-----~g~~~hC~~C~~~f-~~~a~CPdC~q~Le 72 (101)
T 2jne_A 32 ELHCPQCQHVLDQ-----DNGHARCRSCGEFI-EMKALCPDCHQPLQ 72 (101)
T ss_dssp CCBCSSSCSBEEE-----ETTEEEETTTCCEE-EEEEECTTTCSBCE
T ss_pred cccCccCCCccee-----cCCEEECccccchh-hccccCcchhhHHH
Confidence 3789999988652 26777899998754 45689999999874
No 81
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=84.98 E-value=0.25 Score=53.50 Aligned_cols=52 Identities=25% Similarity=0.472 Sum_probs=42.2
Q ss_pred CCCCCCCCCCCCCCCCCCc---------eeccCcc--------------------ccccHHHHHHHhhc--------CCC
Q 016213 331 PLPPDRTICPLCSQKRANP---------SVVTVSG--------------------FVFCYACIFKYVSQ--------YKR 373 (393)
Q Consensus 331 ~~p~~~~~CpiC~~~~~np---------~~~~~~G--------------------~vfCy~Ci~~~~~~--------~~~ 373 (393)
.+|+|..+|+-|++.+.|| +-|+-|| +.+|-.|..+|-.. -..
T Consensus 106 ~i~pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~a 185 (761)
T 3vth_A 106 PVSPDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVA 185 (761)
T ss_dssp CCCCCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCC
T ss_pred ccCCCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCc
Confidence 3567899999999999887 4566788 78899999999863 357
Q ss_pred CCCCCCCCC
Q 016213 374 CPVTLMPAT 382 (393)
Q Consensus 374 CPv~~~~~~ 382 (393)
||.||-.+.
T Consensus 186 C~~CGP~l~ 194 (761)
T 3vth_A 186 CFDCGPSLS 194 (761)
T ss_dssp CTTTSCCEE
T ss_pred CCccCCeeE
Confidence 999997653
No 82
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=84.03 E-value=1.3 Score=34.88 Aligned_cols=47 Identities=17% Similarity=0.364 Sum_probs=35.0
Q ss_pred CCCCCCCCCCCCC-----c-eeccCccccccHHHHHHHhhc-CCCCCCCCCCCC
Q 016213 336 RTICPLCSQKRAN-----P-SVVTVSGFVFCYACIFKYVSQ-YKRCPVTLMPAT 382 (393)
Q Consensus 336 ~~~CpiC~~~~~n-----p-~~~~~~G~vfCy~Ci~~~~~~-~~~CPv~~~~~~ 382 (393)
..+|-||++.+-- + +++..||+-.|.+|.---.++ ++.||-|+.+-+
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 4589999997422 2 567889999999998544443 578999987653
No 83
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=82.26 E-value=0.97 Score=37.13 Aligned_cols=52 Identities=13% Similarity=0.177 Sum_probs=41.0
Q ss_pred CCCCCCCCCCCCC--ceeccCccccccHHHHHHHhhcCCCCCCCCCCCCcCCee
Q 016213 336 RTICPLCSQKRAN--PSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIR 387 (393)
Q Consensus 336 ~~~CpiC~~~~~n--p~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~l~ 387 (393)
-..|..|.+++.+ ......-|.+||..|-.+-....++|-.|+.+++..+++
T Consensus 32 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~~~ 85 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGDVM 85 (122)
T ss_dssp HHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCEESS
T ss_pred CCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCchheE
Confidence 4689999999973 233344899999999988877777999999998865553
No 84
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=79.53 E-value=0.54 Score=34.32 Aligned_cols=36 Identities=19% Similarity=0.495 Sum_probs=27.1
Q ss_pred CCCCCCCCCCCCCCc-----eeccC--ccccccHHHHHHHhhc
Q 016213 335 DRTICPLCSQKRANP-----SVVTV--SGFVFCYACIFKYVSQ 370 (393)
Q Consensus 335 ~~~~CpiC~~~~~np-----~~~~~--~G~vfCy~Ci~~~~~~ 370 (393)
+...||-|+..|+-. +.+.. ||+.|||.|...|-..
T Consensus 5 ~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 5 NTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred cceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 356799999987654 34544 9999999999887643
No 85
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=78.96 E-value=0.19 Score=39.10 Aligned_cols=41 Identities=24% Similarity=0.551 Sum_probs=30.5
Q ss_pred CCCCCCCCCCCCceeccCccccccHHHHHHHhhcCCCCCCCCCCCCc
Q 016213 337 TICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATV 383 (393)
Q Consensus 337 ~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~ 383 (393)
..||.|..++.- ..|+..|-.|-.++-.+ ..||-|+.++.+
T Consensus 3 ~~CP~C~~~l~~-----~~~~~~C~~C~~~~~~~-afCPeCgq~Le~ 43 (81)
T 2jrp_A 3 ITCPVCHHALER-----NGDTAHCETCAKDFSLQ-ALCPDCRQPLQV 43 (81)
T ss_dssp CCCSSSCSCCEE-----CSSEEECTTTCCEEEEE-EECSSSCSCCCE
T ss_pred CCCCCCCCcccc-----CCCceECccccccCCCc-ccCcchhhHHHH
Confidence 579999988652 26677788888765554 499999988753
No 86
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=78.45 E-value=0.54 Score=50.97 Aligned_cols=51 Identities=33% Similarity=0.628 Sum_probs=39.8
Q ss_pred CCCCCCCCCCCCCCCCCc---------eeccCcc--------------------ccccHHHHHHHhh--------cCCCC
Q 016213 332 LPPDRTICPLCSQKRANP---------SVVTVSG--------------------FVFCYACIFKYVS--------QYKRC 374 (393)
Q Consensus 332 ~p~~~~~CpiC~~~~~np---------~~~~~~G--------------------~vfCy~Ci~~~~~--------~~~~C 374 (393)
+|+|..+|+-|.+.+.|| +-|+-|| +.+|-.|..+|-. +-..|
T Consensus 102 i~pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC 181 (772)
T 4g9i_A 102 IPPDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTAC 181 (772)
T ss_dssp CCCCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCC
T ss_pred cCCchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCC
Confidence 567888999999888887 3455576 5779999999985 33589
Q ss_pred CCCCCCCC
Q 016213 375 PVTLMPAT 382 (393)
Q Consensus 375 Pv~~~~~~ 382 (393)
|.||-.+.
T Consensus 182 ~~CGP~l~ 189 (772)
T 4g9i_A 182 PVCGPSYR 189 (772)
T ss_dssp TTTSCCEE
T ss_pred ccCCceEE
Confidence 99997653
No 87
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=78.16 E-value=4.5 Score=30.96 Aligned_cols=41 Identities=12% Similarity=0.163 Sum_probs=29.1
Q ss_pred CCCCCCCCCCCCCCceeccCccccccHHHHHHHhhcCCCCCCCCCCCCcC
Q 016213 335 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVE 384 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~ 384 (393)
....|..|.+.|.+..+. .-|.+|-..| -+|-.|+.++...
T Consensus 24 ~~~~C~~C~~~I~~~~~~-a~~~~~H~~C--------F~C~~C~~~L~~~ 64 (89)
T 1x64_A 24 RMPLCDKCGSGIVGAVVK-ARDKYRHPEC--------FVCADCNLNLKQK 64 (89)
T ss_dssp SCCBCTTTCCBCCSCCEE-SSSCEECTTT--------CCCSSSCCCTTTS
T ss_pred cCCCcccCCCEecccEEE-ECCceECccC--------CEecCCCCCCCCC
Confidence 467899999999975543 4776665544 3678888887643
No 88
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=78.08 E-value=3.3 Score=32.35 Aligned_cols=50 Identities=20% Similarity=0.378 Sum_probs=35.4
Q ss_pred CCCCCCCCCCCCC--CceeccCccccccHHHHHHHhhcCCCCCCCCCCCCcCCeee
Q 016213 335 DRTICPLCSQKRA--NPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRR 388 (393)
Q Consensus 335 ~~~~CpiC~~~~~--np~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~l~r 388 (393)
....|..|++.+. ++--+. ||.+||-. ++| .+++.|+..-+...-+.|.+
T Consensus 24 ~~~rC~~C~kkvgl~~~f~Cr-Cg~~FC~~--HRy-~e~H~C~fDyK~~gr~~iak 75 (85)
T 1wff_A 24 IMKHCFLCGKKTGLATSFECR-CGNNFCAS--HRY-AEAHGCNYDYKSAGRRYLEE 75 (85)
T ss_dssp CCCBCSSSCCBCSSSSCEECT-TCCEECTT--TCS-TGGGTCCSCCSSSCCCCCCC
T ss_pred cCccchhhCCeecccCCeEcC-CCCEeccc--CCC-ccCCCCcchhhHHHHHHHHH
Confidence 4678999999644 588887 99999974 223 34567988766666555543
No 89
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=77.28 E-value=0.66 Score=49.37 Aligned_cols=49 Identities=33% Similarity=0.547 Sum_probs=34.5
Q ss_pred CCCCCCCCCCCCCCCCc---------eeccCcc--------------------ccccHHHHHHHhh--------cCCCCC
Q 016213 333 PPDRTICPLCSQKRANP---------SVVTVSG--------------------FVFCYACIFKYVS--------QYKRCP 375 (393)
Q Consensus 333 p~~~~~CpiC~~~~~np---------~~~~~~G--------------------~vfCy~Ci~~~~~--------~~~~CP 375 (393)
|+|..+|+-|++.+.|| +-|+-|| +.+|-.|..+|-. +-..||
T Consensus 14 ~pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp 93 (657)
T 3ttc_A 14 VPDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACP 93 (657)
T ss_dssp CCCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCT
T ss_pred CCchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCc
Confidence 33566677777666665 2344455 6789999999985 336899
Q ss_pred CCCCCC
Q 016213 376 VTLMPA 381 (393)
Q Consensus 376 v~~~~~ 381 (393)
.||-.+
T Consensus 94 ~CGP~l 99 (657)
T 3ttc_A 94 ECGPYL 99 (657)
T ss_dssp TTSCCE
T ss_pred ccCccc
Confidence 999766
No 90
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=76.91 E-value=0.49 Score=38.53 Aligned_cols=29 Identities=28% Similarity=0.463 Sum_probs=19.4
Q ss_pred CCceeccCccccccHHHHHHHhhcCCCCCCCCCC
Q 016213 347 ANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMP 380 (393)
Q Consensus 347 ~np~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~ 380 (393)
.-|..|.-|||+|+ +-+....+||.|+..
T Consensus 65 v~p~~C~~CG~~F~-----~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 65 IKPAQCRKCGFVFK-----AEINIPSRCPKCKSE 93 (105)
T ss_dssp ECCCBBTTTCCBCC-----CCSSCCSSCSSSCCC
T ss_pred EECcChhhCcCeec-----ccCCCCCCCcCCCCC
Confidence 34444556999993 344556899999854
No 91
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=75.87 E-value=0.82 Score=40.32 Aligned_cols=10 Identities=40% Similarity=0.783 Sum_probs=7.6
Q ss_pred CCCCCCCCCC
Q 016213 372 KRCPVTLMPA 381 (393)
Q Consensus 372 ~~CPv~~~~~ 381 (393)
..||+|+.|-
T Consensus 154 ~~CP~Cg~~~ 163 (170)
T 3pwf_A 154 EYCPVCGAPK 163 (170)
T ss_dssp SBCTTTCCBG
T ss_pred CCCCCCCCCH
Confidence 4899998664
No 92
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=75.29 E-value=0.76 Score=35.73 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=24.5
Q ss_pred CCCCCCCCCC-----CceeccCccccccHHHHHHHhhcC
Q 016213 338 ICPLCSQKRA-----NPSVVTVSGFVFCYACIFKYVSQY 371 (393)
Q Consensus 338 ~CpiC~~~~~-----np~~~~~~G~vfCy~Ci~~~~~~~ 371 (393)
-||-|...+. .++.++.||+.||+.|-..|=++|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~~H 65 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQH 65 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTTT
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCchhhcC
Confidence 3888877542 235676799999999987774444
No 93
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=73.90 E-value=0.48 Score=36.46 Aligned_cols=36 Identities=28% Similarity=0.691 Sum_probs=23.9
Q ss_pred CCCCC--CCCCCC-----Cceecc-----CccccccHHHHHHHhhcCCCC
Q 016213 337 TICPL--CSQKRA-----NPSVVT-----VSGFVFCYACIFKYVSQYKRC 374 (393)
Q Consensus 337 ~~Cpi--C~~~~~-----np~~~~-----~~G~vfCy~Ci~~~~~~~~~C 374 (393)
.-||- |...+. ..+.++ .||+.||+.|-..|=. ..|
T Consensus 26 ~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~--~~C 73 (80)
T 2jmo_A 26 VLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE--GEC 73 (80)
T ss_dssp CCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS--SCS
T ss_pred EECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC--Ccc
Confidence 45766 776543 235664 5999999999876533 445
No 94
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=69.93 E-value=0.7 Score=29.98 Aligned_cols=19 Identities=21% Similarity=0.534 Sum_probs=15.4
Q ss_pred CCCCCCCCCCCCCCceecc
Q 016213 335 DRTICPLCSQKRANPSVVT 353 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~ 353 (393)
+..+||+|++.+.++-.+.
T Consensus 4 EGFiCP~C~~~l~s~~~L~ 22 (34)
T 3mjh_B 4 EGFICPQCMKSLGSADELF 22 (34)
T ss_dssp EEEECTTTCCEESSHHHHH
T ss_pred cccCCcHHHHHcCCHHHHH
Confidence 3578999999999987653
No 95
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=68.44 E-value=3.6 Score=33.65 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=38.2
Q ss_pred CCCCCCCCCCCCCC---ceeccCccccccHHHHHHHhhcCCCCCCCCCCCCcC
Q 016213 335 DRTICPLCSQKRAN---PSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVE 384 (393)
Q Consensus 335 ~~~~CpiC~~~~~n---p~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~ 384 (393)
+-..|..|.+++.+ +-.. .-|.+||.+|-.+-....++|..|++++...
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~-~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~ 79 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYY-KLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 79 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEE-ETTEEECHHHHHHHHCCCEECTTTCCEECTT
T ss_pred HHcccCcCCCccccCCCeEEE-ECCEEeecCchhhhCCCccChhhcCCccCcc
Confidence 46789999999953 3444 4999999999887665555899999988753
No 96
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=67.33 E-value=6.4 Score=31.94 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=37.4
Q ss_pred CCCCCCCCCCCCCCceeccCccccccHHHHHHHhhcCCCCCCCCCCCCcC
Q 016213 335 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVE 384 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~ 384 (393)
+-..|..|.+++.+......-|.+||..|-.+- ...+|..|++++..+
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~~~ 76 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKN--HAVVCQGCHNAIDPE 76 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHH--SCCBCTTTCSBCCTT
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcC--cCccCcccCCcCCcC
Confidence 357899999999886544458999999997543 246899999998863
No 97
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=66.63 E-value=3.3 Score=37.88 Aligned_cols=32 Identities=25% Similarity=0.496 Sum_probs=23.9
Q ss_pred CCCCCCCCCCCCC---ceeccCccccccHHHHHHH
Q 016213 336 RTICPLCSQKRAN---PSVVTVSGFVFCYACIFKY 367 (393)
Q Consensus 336 ~~~CpiC~~~~~n---p~~~~~~G~vfCy~Ci~~~ 367 (393)
...|.+|.+...- -.=|..||.|||..|-...
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 4589999987542 2346679999999997644
No 98
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=65.49 E-value=2.7 Score=35.04 Aligned_cols=32 Identities=22% Similarity=0.402 Sum_probs=24.2
Q ss_pred CCCCCCCCCCCCC---ceeccCccccccHHHHHHH
Q 016213 336 RTICPLCSQKRAN---PSVVTVSGFVFCYACIFKY 367 (393)
Q Consensus 336 ~~~CpiC~~~~~n---p~~~~~~G~vfCy~Ci~~~ 367 (393)
...|.+|.....- ---+..||.|||..|....
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 4689999997542 2356679999999997544
No 99
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=65.34 E-value=1.5 Score=39.23 Aligned_cols=10 Identities=30% Similarity=0.746 Sum_probs=7.7
Q ss_pred CCCCCCCCCC
Q 016213 372 KRCPVTLMPA 381 (393)
Q Consensus 372 ~~CPv~~~~~ 381 (393)
.+||+|+.+-
T Consensus 172 ~~CP~C~~~k 181 (191)
T 1lko_A 172 ELCPACAHPK 181 (191)
T ss_dssp SBCTTTCCBG
T ss_pred CCCCCCcCCH
Confidence 3899999764
No 100
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=64.33 E-value=2 Score=38.74 Aligned_cols=10 Identities=30% Similarity=1.102 Sum_probs=8.1
Q ss_pred CCCCCCCCCC
Q 016213 372 KRCPVTLMPA 381 (393)
Q Consensus 372 ~~CPv~~~~~ 381 (393)
..||+|+.+-
T Consensus 187 ~~CP~C~~~k 196 (202)
T 1yuz_A 187 EKCPICFRPK 196 (202)
T ss_dssp SBCTTTCCBG
T ss_pred CCCCCCCCCh
Confidence 6899999764
No 101
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=63.91 E-value=5.4 Score=36.11 Aligned_cols=32 Identities=25% Similarity=0.439 Sum_probs=23.7
Q ss_pred CCCCCCCCCCCCC---ceeccCccccccHHHHHHH
Q 016213 336 RTICPLCSQKRAN---PSVVTVSGFVFCYACIFKY 367 (393)
Q Consensus 336 ~~~CpiC~~~~~n---p~~~~~~G~vfCy~Ci~~~ 367 (393)
...|++|.....- -.=|..||.|||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 4689999997531 2346679999999997543
No 102
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.32 E-value=3.4 Score=30.83 Aligned_cols=44 Identities=23% Similarity=0.455 Sum_probs=30.4
Q ss_pred CCCCCCCCCCCCCCc----eeccCccccccHHHHHHHhhcCCCCCCCCCCCC
Q 016213 335 DRTICPLCSQKRANP----SVVTVSGFVFCYACIFKYVSQYKRCPVTLMPAT 382 (393)
Q Consensus 335 ~~~~CpiC~~~~~np----~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~ 382 (393)
....|..|.+.+.-+ -.+. ||.+||-. ++|- +++.|+..-+.+.
T Consensus 14 ~~~rC~~C~kk~gL~~~egf~Cr-Cg~~FC~~--HRy~-e~H~C~fDyk~~g 61 (67)
T 1x4w_A 14 SRRRCFQCQTKLELVQQELGSCR-CGYVFCML--HRLP-EQHDCTFDHMGRG 61 (67)
T ss_dssp CTTBCSSSCCBCCHHHHHHHCCS-SSCCCCTT--TCST-GGGTCSSCSSCSS
T ss_pred cCCcchhhCCeecccccCceEec-CCCEehhc--cCCc-cccCCcccccccc
Confidence 457899999998766 4675 99999973 2333 3456877665544
No 103
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=63.28 E-value=2.5 Score=37.30 Aligned_cols=50 Identities=14% Similarity=0.317 Sum_probs=37.9
Q ss_pred CCCCCCCCCCCCCC---ceeccCccccccHHHHHHHhhcCCCCCCCCCCCCcCC
Q 016213 335 DRTICPLCSQKRAN---PSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQ 385 (393)
Q Consensus 335 ~~~~CpiC~~~~~n---p~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~ 385 (393)
+-..|..|.+.+.+ .... .-|.+||..|-.+-.....+|..|++++...+
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~-~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~e 83 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYT-KSGMILCRNDYIRLFGNSGACSACGQSIPASE 83 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEE-ETTEEECHHHHHHHHSCCEECTTTCCEECTTS
T ss_pred cCcccCCCCcccccCCceEEE-eCCccccccccccccccCCccccCCCccccCc
Confidence 35789999999875 4444 48999999998776554448999999887543
No 104
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=62.99 E-value=4 Score=31.86 Aligned_cols=34 Identities=21% Similarity=0.269 Sum_probs=24.7
Q ss_pred CCCCCCCCCCCCCCC---ceeccCccccccHHHHHHH
Q 016213 334 PDRTICPLCSQKRAN---PSVVTVSGFVFCYACIFKY 367 (393)
Q Consensus 334 ~~~~~CpiC~~~~~n---p~~~~~~G~vfCy~Ci~~~ 367 (393)
.+...|.+|.....- --=+..||.|||..|....
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 356689999997542 2345679999999997543
No 105
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=62.76 E-value=7.7 Score=30.07 Aligned_cols=53 Identities=17% Similarity=0.299 Sum_probs=39.0
Q ss_pred CCCCCCCCCCCCCCceeccCccccccHHHHHHHhhcCCCCCCCCCCCCcC-CeeeC
Q 016213 335 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVE-QIRRL 389 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~-~l~ri 389 (393)
+-..|..|.+++.+......-|.+||.+|-.+- ...+|..|++++... ..++.
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~~~~~~~~a 85 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTRE--DSPKCKGCFKAIVAGDQNVEY 85 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTTC--CCCBCSSSCCBCCSSSCEEES
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhhh--cCCccccCCCccccCCeEEEe
Confidence 357899999999877544458999999886321 236999999999854 45543
No 106
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=62.38 E-value=4.3 Score=29.50 Aligned_cols=40 Identities=28% Similarity=0.589 Sum_probs=31.6
Q ss_pred CCCCCCCCCCCCce--eccCccccccHHHHHHHhhcC-CCCCCC
Q 016213 337 TICPLCSQKRANPS--VVTVSGFVFCYACIFKYVSQY-KRCPVT 377 (393)
Q Consensus 337 ~~CpiC~~~~~np~--~~~~~G~vfCy~Ci~~~~~~~-~~CPv~ 377 (393)
..|=.|...+.+.. .++.|+.+||.+|=. |+-+. +.||.|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~-fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDV-FVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHH-TTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhH-HHHhhccCCcCC
Confidence 35999999987654 377899999999975 55444 789988
No 107
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=59.87 E-value=4.3 Score=33.72 Aligned_cols=42 Identities=19% Similarity=0.343 Sum_probs=27.4
Q ss_pred CCCCCCCCCCCCCc---eeccCccccccHHHHHHHhhcCCCCCCC
Q 016213 336 RTICPLCSQKRANP---SVVTVSGFVFCYACIFKYVSQYKRCPVT 377 (393)
Q Consensus 336 ~~~CpiC~~~~~np---~~~~~~G~vfCy~Ci~~~~~~~~~CPv~ 377 (393)
...|..|.....-- --+..||.|||..|....+.....|-.|
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C 63 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLC 63 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHH
Confidence 45799999986543 3466799999999976655544455554
No 108
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=59.67 E-value=4.8 Score=30.98 Aligned_cols=33 Identities=21% Similarity=0.400 Sum_probs=24.7
Q ss_pred CCCCCCCCCCCCCC---ceeccCccccccHHHHHHH
Q 016213 335 DRTICPLCSQKRAN---PSVVTVSGFVFCYACIFKY 367 (393)
Q Consensus 335 ~~~~CpiC~~~~~n---p~~~~~~G~vfCy~Ci~~~ 367 (393)
+...|.+|.+...- --=+..||.|||..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 45689999997542 2346679999999997643
No 109
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.85 E-value=4.9 Score=30.92 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=23.6
Q ss_pred CCCCCCCCCCCCCCc---eeccCccccccHHHHHH
Q 016213 335 DRTICPLCSQKRANP---SVVTVSGFVFCYACIFK 366 (393)
Q Consensus 335 ~~~~CpiC~~~~~np---~~~~~~G~vfCy~Ci~~ 366 (393)
+...|.+|.....-- -=+..||.|||..|...
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 346899999985322 34567999999999653
No 110
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=58.47 E-value=4.9 Score=30.79 Aligned_cols=33 Identities=21% Similarity=0.487 Sum_probs=24.4
Q ss_pred CCCCCCCCCCCCCC---ceeccCccccccHHHHHHH
Q 016213 335 DRTICPLCSQKRAN---PSVVTVSGFVFCYACIFKY 367 (393)
Q Consensus 335 ~~~~CpiC~~~~~n---p~~~~~~G~vfCy~Ci~~~ 367 (393)
+...|.+|.....- ---+..||.|||..|....
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 35679999997542 2345679999999998643
No 111
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=58.10 E-value=4.8 Score=31.48 Aligned_cols=33 Identities=24% Similarity=0.371 Sum_probs=24.4
Q ss_pred CCCCCCCCCCCCC---ceeccCccccccHHHHHHHh
Q 016213 336 RTICPLCSQKRAN---PSVVTVSGFVFCYACIFKYV 368 (393)
Q Consensus 336 ~~~CpiC~~~~~n---p~~~~~~G~vfCy~Ci~~~~ 368 (393)
...|.+|.....- ---+..||.|||..|....+
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 5679999987532 24466799999999986544
No 112
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=57.40 E-value=13 Score=31.89 Aligned_cols=49 Identities=18% Similarity=0.295 Sum_probs=38.3
Q ss_pred CCCCCCCCCCCCCCceeccCccccccHHHHHHHhhcCCCCCCCCCCCCcCCe
Q 016213 335 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQI 386 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~l 386 (393)
+-..|..|.+.+.+.... .-|.+||..|-.+-. ..+|..|+.++...+.
T Consensus 32 ~CF~C~~C~~~L~~~~f~-~~g~~yC~~~y~~~f--~~~C~~C~~~I~~~~~ 80 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCFS-RGESVYCKDDFFKRF--GTKCAACQLGIPPTQV 80 (169)
T ss_dssp TTSBCTTTCCBCCSCCEE-SSSCEECHHHHHHHH--SCBCTTTCCBCCTTSE
T ss_pred ccCccCCCCCcCCCCCcc-cCCeeeecccccccc--cccccccccccCCCcE
Confidence 467899999999887664 489999999876543 3689999998876543
No 113
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=56.69 E-value=2.5 Score=29.19 Aligned_cols=10 Identities=30% Similarity=0.371 Sum_probs=7.7
Q ss_pred CCCCCCCCCC
Q 016213 371 YKRCPVTLMP 380 (393)
Q Consensus 371 ~~~CPv~~~~ 380 (393)
+=+||+|+.+
T Consensus 30 dw~CP~Cg~~ 39 (46)
T 6rxn_A 30 DWCCPVCGVS 39 (46)
T ss_dssp TCBCTTTCCB
T ss_pred CCcCcCCCCc
Confidence 3489999965
No 114
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.15 E-value=12 Score=28.08 Aligned_cols=42 Identities=21% Similarity=0.393 Sum_probs=25.8
Q ss_pred CCCCCCCCCCCCCceeccCccccccHHHHHHHhhcCCCCCCCCCCCCcCC
Q 016213 336 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQ 385 (393)
Q Consensus 336 ~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~ 385 (393)
...|+.|.+.|...-.+..-|.+|-..| -+|-.|+.+++...
T Consensus 15 ~~~C~~C~~~I~~~e~v~a~~~~wH~~C--------F~C~~C~~~L~~~~ 56 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLCVNGHFFHRSC--------FRCHTCEATLWPGG 56 (82)
T ss_dssp SCBCSSSCCBCCTTTBCCBTTBCCBTTT--------CBCSSSCCBCCTTS
T ss_pred CCCCcccCCCcccceEEEECCCeeCCCc--------CEEcCCCCCcCCCc
Confidence 5689999999865422233565554444 25667777765443
No 115
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=54.65 E-value=6.6 Score=29.34 Aligned_cols=30 Identities=27% Similarity=0.412 Sum_probs=22.6
Q ss_pred CCCCCCCCCCCC---ceeccCccccccHHHHHH
Q 016213 337 TICPLCSQKRAN---PSVVTVSGFVFCYACIFK 366 (393)
Q Consensus 337 ~~CpiC~~~~~n---p~~~~~~G~vfCy~Ci~~ 366 (393)
..|.+|.....- --=+..||.|||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 479999997542 234567999999999753
No 116
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=54.02 E-value=13 Score=32.34 Aligned_cols=48 Identities=19% Similarity=0.279 Sum_probs=36.0
Q ss_pred CCCCCCCCCCCCCCceeccCccccccHHHHHHHhhcCCCCCCCCCCCCcCC
Q 016213 335 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQ 385 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~ 385 (393)
+-..|..|.+++.+.... .-|.+||.+|-.+-. ..+|..|+.++...+
T Consensus 86 ~CF~C~~C~~~L~~~~f~-~~g~~yC~~~y~~~f--~~kC~~C~~~I~~~~ 133 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERCFS-RGESVYCKDDFFKRF--GTKCAACQLGIPPTQ 133 (182)
T ss_dssp STTSCTTTCCCCSSCCEE-ETTEEECHHHHHHTT--SCCCTTTCCCCCSSC
T ss_pred ccCccCCCCCccCCCcee-ECCEeeecCcccccc--ccccccCCCccCCCc
Confidence 357888899988876654 489999998875432 368999999887544
No 117
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=53.58 E-value=12 Score=27.63 Aligned_cols=46 Identities=17% Similarity=0.432 Sum_probs=31.2
Q ss_pred CCCCCCCCCCCCC-ceeccCccccccHHHHHHHhhcCCCCCCCCCCCCcCC
Q 016213 336 RTICPLCSQKRAN-PSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQ 385 (393)
Q Consensus 336 ~~~CpiC~~~~~n-p~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~ 385 (393)
...|..|.+.+.- +-.+. ||.+||-. ++|- +.+.|+..-+...-+.
T Consensus 15 ~~rC~~C~kkvgl~~f~Cr-Cg~~FC~~--HRy~-e~H~C~fDyk~~gr~~ 61 (64)
T 1wfh_A 15 PNRCTVCRKRVGLTGFMCR-CGTTFCGS--HRYP-EVHGCTFDFKSAGSGP 61 (64)
T ss_dssp CCCCTTTCCCCCTTCEECS-SSCEECTT--TCST-TTTTCCCCCSCCCCSC
T ss_pred CCcChhhCCccCccCEEee-cCCEeccc--cCCc-ccCCCCchhhHHHHHH
Confidence 5689999997655 45675 99999974 2333 4456887766555443
No 118
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=52.67 E-value=2.9 Score=41.35 Aligned_cols=33 Identities=15% Similarity=0.281 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCC---ceeccCccccccHHHHHHHh
Q 016213 336 RTICPLCSQKRAN---PSVVTVSGFVFCYACIFKYV 368 (393)
Q Consensus 336 ~~~CpiC~~~~~n---p~~~~~~G~vfCy~Ci~~~~ 368 (393)
...|..|.....- -.-|..||.|||..|....+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp ------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 5679999997542 13456799999999997654
No 119
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=52.12 E-value=14 Score=32.35 Aligned_cols=35 Identities=17% Similarity=0.444 Sum_probs=28.4
Q ss_pred CCCCCCCCCCCCCCceeccCccccccHHHHHHHhh
Q 016213 335 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVS 369 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~ 369 (393)
+-..|..|.+++.+-.....-|.+||..|-.+-..
T Consensus 33 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~ 67 (192)
T 1b8t_A 33 SCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYG 67 (192)
T ss_dssp TTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHS
T ss_pred CCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcC
Confidence 46889999999988765445899999999887654
No 120
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=49.80 E-value=3 Score=32.76 Aligned_cols=13 Identities=15% Similarity=0.171 Sum_probs=9.2
Q ss_pred hhcCCCCCCCCCC
Q 016213 368 VSQYKRCPVTLMP 380 (393)
Q Consensus 368 ~~~~~~CPv~~~~ 380 (393)
+.+.=+||+|+.+
T Consensus 65 lPddW~CPvCga~ 77 (87)
T 1s24_A 65 IPDDWCCPDCGAT 77 (87)
T ss_dssp CCTTCCCSSSCCC
T ss_pred CCCCCCCCCCCCC
Confidence 3344589999964
No 121
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=48.46 E-value=23 Score=26.80 Aligned_cols=47 Identities=19% Similarity=0.380 Sum_probs=32.4
Q ss_pred CCCCCCCCCCCCCC-ceeccCccccccHHHHHHHhhcCCCCCCCCCCCCcCC
Q 016213 335 DRTICPLCSQKRAN-PSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQ 385 (393)
Q Consensus 335 ~~~~CpiC~~~~~n-p~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~ 385 (393)
....|..|.+.+.- +-.+. ||.+||-. ++| .+.+.|+..-+.+.-+.
T Consensus 24 ~~~RC~~C~kkvgL~~f~Cr-Cg~~FCs~--HRy-~e~H~C~fDyk~~gr~~ 71 (74)
T 1wfp_A 24 TATRCLSCNKKVGVTGFKCR-CGSTFCGT--HRY-PESHECQFDFKGVASGP 71 (74)
T ss_dssp CCCBCSSSCCBCTTTCEECT-TSCEECTT--TCS-TTTSCCCSCTTSCCCCC
T ss_pred cCccchhhcCcccccceEec-cCCEeccc--cCC-CcCCCCcCchhHHhHHh
Confidence 35789999987555 45675 99999974 223 34567888776655443
No 122
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=48.26 E-value=16 Score=27.00 Aligned_cols=48 Identities=17% Similarity=0.326 Sum_probs=32.6
Q ss_pred CCCCCCCCCCCCCC-ceeccCccccccHHHHHHHhhcCCCCCCCCCCCCcCCe
Q 016213 335 DRTICPLCSQKRAN-PSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQI 386 (393)
Q Consensus 335 ~~~~CpiC~~~~~n-p~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~l 386 (393)
....|..|.+.+.- +-.+. ||.+||-. ++|- +.+.|+..-+.+.-++|
T Consensus 14 ~~~rC~~C~kkvgl~~f~Cr-Cg~~FC~~--HR~~-e~H~C~fDyk~~gr~~~ 62 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVMGFKCK-CGSTFCGS--HRYP-EKHECSFDFKEVGSGPS 62 (64)
T ss_dssp CSCSCTTTCCCCTTSCEECT-TSCEECSS--SCSS-TTTTCCCCCSCSCCCSC
T ss_pred cCCcChhhCCcccccCeEee-cCCEeccc--CCCc-cccCCCcchhHHhHHHh
Confidence 35689999997654 45675 99999974 2233 44678877766655544
No 123
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=47.13 E-value=4.9 Score=32.25 Aligned_cols=13 Identities=31% Similarity=0.342 Sum_probs=9.8
Q ss_pred CCCCCCCCCCCCc
Q 016213 371 YKRCPVTLMPATV 383 (393)
Q Consensus 371 ~~~CPv~~~~~~~ 383 (393)
.+.||+||.+++.
T Consensus 47 g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 47 KGKCPVCGRELTD 59 (112)
T ss_dssp SEECTTTCCEECH
T ss_pred CCCCCCCCCcCCH
Confidence 4579999987764
No 124
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=47.13 E-value=3.3 Score=32.09 Aligned_cols=11 Identities=18% Similarity=0.163 Sum_probs=8.4
Q ss_pred cCCCCCCCCCC
Q 016213 370 QYKRCPVTLMP 380 (393)
Q Consensus 370 ~~~~CPv~~~~ 380 (393)
+.=+||+|+.+
T Consensus 59 ddW~CPvCga~ 69 (81)
T 2kn9_A 59 DDWSCPDCGAA 69 (81)
T ss_dssp TTCCCTTTCCC
T ss_pred CCCcCCCCCCC
Confidence 44589999975
No 125
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=46.90 E-value=5.8 Score=36.48 Aligned_cols=26 Identities=31% Similarity=0.843 Sum_probs=18.8
Q ss_pred CCCCCCCCCCCCCc-eeccCccccccHHHH
Q 016213 336 RTICPLCSQKRANP-SVVTVSGFVFCYACI 364 (393)
Q Consensus 336 ~~~CpiC~~~~~np-~~~~~~G~vfCy~Ci 364 (393)
...||.|++. +. .+-. -|+.+|..|-
T Consensus 14 ~~~CP~Cg~~--d~~~~~~-dg~~~C~~Cg 40 (255)
T 1nui_A 14 HIPCDNCGSS--DGNSLFS-DGHTFCYVCE 40 (255)
T ss_dssp EECCSSSCCS--SCEEEET-TSCEEETTTC
T ss_pred CCcCCCCCCC--CCceEeC-CCCeecccCC
Confidence 5679999985 22 2223 6889999995
No 126
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=46.65 E-value=7.7 Score=28.99 Aligned_cols=13 Identities=31% Similarity=0.756 Sum_probs=10.1
Q ss_pred CCCCCCCCCCCCC
Q 016213 335 DRTICPLCSQKRA 347 (393)
Q Consensus 335 ~~~~CpiC~~~~~ 347 (393)
+-..||+|+.++.
T Consensus 7 eiL~CP~ck~~L~ 19 (69)
T 2pk7_A 7 DILACPICKGPLK 19 (69)
T ss_dssp GTCCCTTTCCCCE
T ss_pred hheeCCCCCCcCe
Confidence 3567999998865
No 127
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=46.21 E-value=16 Score=28.86 Aligned_cols=36 Identities=14% Similarity=0.120 Sum_probs=26.1
Q ss_pred CCCCCCCCCCCCCceeccC--cccccc----HHHHHHHhhcC
Q 016213 336 RTICPLCSQKRANPSVVTV--SGFVFC----YACIFKYVSQY 371 (393)
Q Consensus 336 ~~~CpiC~~~~~np~~~~~--~G~vfC----y~Ci~~~~~~~ 371 (393)
...|..|+..-.|-=++-+ ||||+| ..-+.++.++.
T Consensus 25 ~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr~~~~Ha~~H~~~t 66 (97)
T 2uzg_A 25 LGTCQDCKVQGPNLWACLENRCSYVGCGESQVDHSTIHSQET 66 (97)
T ss_dssp TTCCSSSCCCCSSCEEECCTTCCCEECCTTTTCHHHHHHHHT
T ss_pred CCcCcCcCCCCCCceeeecccCCCcccCCCcChHHHHHhhhc
Confidence 4579999976667545556 999999 56666666653
No 128
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=44.43 E-value=15 Score=25.14 Aligned_cols=24 Identities=29% Similarity=0.803 Sum_probs=14.2
Q ss_pred CCCCCCCCC-CC-CCc----eeccCccccc
Q 016213 336 RTICPLCSQ-KR-ANP----SVVTVSGFVF 359 (393)
Q Consensus 336 ~~~CpiC~~-~~-~np----~~~~~~G~vf 359 (393)
...||.|+. .+ .|+ .+++.||.|+
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred cEeCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 457999987 33 222 3555566655
No 129
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.62 E-value=28 Score=24.95 Aligned_cols=35 Identities=14% Similarity=0.413 Sum_probs=25.6
Q ss_pred CCCCCCCCCCCCCCceeccCccccccHHHHHHHhh
Q 016213 335 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVS 369 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~ 369 (393)
+-..|..|.+.+.+......-|.+||..|-.+-++
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 32 GCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp TTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH
T ss_pred cCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHc
Confidence 35778888888876544445888999888876664
No 130
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=43.57 E-value=9.5 Score=29.14 Aligned_cols=36 Identities=14% Similarity=0.321 Sum_probs=25.2
Q ss_pred CCCCCCCCCCCCCCceeccCccccccHHHHHHHhhcC-----CCCCCCCCCCC
Q 016213 335 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQY-----KRCPVTLMPAT 382 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~-----~~CPv~~~~~~ 382 (393)
....|++|++......-+. .+++.+ -.|++|++...
T Consensus 27 ~~h~C~~Cgk~F~~~~~L~------------~H~~~H~~~k~~~C~~C~k~F~ 67 (85)
T 2lv2_A 27 ECHLCPVCGESFASKGAQE------------RHLRLLHAAQVFPCKYCPATFY 67 (85)
T ss_dssp TTEECTTSCCEESSHHHHH------------HHHHTTSCSSSEECTTSSCEES
T ss_pred CCEECCCCCCCcCcHHHHh------------hhhhhccCCCccCCCCCCCEeC
Confidence 4578999999888876654 444433 37999997653
No 131
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=43.31 E-value=4.8 Score=28.77 Aligned_cols=11 Identities=18% Similarity=0.087 Sum_probs=8.2
Q ss_pred cCCCCCCCCCC
Q 016213 370 QYKRCPVTLMP 380 (393)
Q Consensus 370 ~~~~CPv~~~~ 380 (393)
+.=+||+|+.+
T Consensus 35 ~dw~CP~Cga~ 45 (55)
T 2v3b_B 35 ADWVCPDCGVG 45 (55)
T ss_dssp TTCCCTTTCCC
T ss_pred CCCcCCCCCCC
Confidence 44489999965
No 132
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=41.31 E-value=30 Score=26.18 Aligned_cols=43 Identities=23% Similarity=0.495 Sum_probs=29.1
Q ss_pred CCCCCCCCCCCCCC-ceeccCccccccHHHHHHHhhcCCCCCCCCCCC
Q 016213 335 DRTICPLCSQKRAN-PSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPA 381 (393)
Q Consensus 335 ~~~~CpiC~~~~~n-p~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~ 381 (393)
..+.|..|++.+.- +--+. ||.+||-. ++| .+.+.|+..-+..
T Consensus 24 ~~nRC~~CrKkvgL~gf~Cr-Cg~~FCs~--HRy-~e~H~C~fDyk~~ 67 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLTGFDCR-CGNLFCGL--HRY-SDKHNCPYDYKAE 67 (74)
T ss_dssp CTTBCSSSCCBCGGGCEECT-TSCEECSS--SCS-TTTTTCCCCGGGT
T ss_pred cCCcChhhCCcccccCeecC-CCCEechh--cCC-CccCCCcchhhhh
Confidence 35789999997554 56787 99999973 222 2445687665444
No 133
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=41.02 E-value=15 Score=25.87 Aligned_cols=9 Identities=33% Similarity=0.490 Sum_probs=5.2
Q ss_pred CCCCCCCCC
Q 016213 372 KRCPVTLMP 380 (393)
Q Consensus 372 ~~CPv~~~~ 380 (393)
=+||+|+.+
T Consensus 37 w~CP~Cg~~ 45 (52)
T 1e8j_A 37 WACPVCGAS 45 (52)
T ss_dssp CCCSSSCCC
T ss_pred CcCCCCCCc
Confidence 356666643
No 134
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.14 E-value=21 Score=26.37 Aligned_cols=38 Identities=13% Similarity=0.141 Sum_probs=24.2
Q ss_pred CCCCCCCCCCCCCceeccCccccccHHHHHHHhhcCCCCCCCCCCCC
Q 016213 336 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPAT 382 (393)
Q Consensus 336 ~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~ 382 (393)
...|+-|.+.|....+ ..-|.+|-..|- +|-.|+.++.
T Consensus 15 ~~~C~~C~~~I~~~~~-~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVGVFV-KLRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCSSCE-ECSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCccccCCCCccCcEE-EECcceeCcCcC--------eeCCCCCCCC
Confidence 4578888888887544 346655544443 5667776654
No 135
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.69 E-value=44 Score=24.39 Aligned_cols=45 Identities=16% Similarity=0.202 Sum_probs=32.9
Q ss_pred CCCCCCC--CCCCCCCceeccCccccccHHHHHHHhhcCCCCCCCCCCCC
Q 016213 335 DRTICPL--CSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPAT 382 (393)
Q Consensus 335 ~~~~Cpi--C~~~~~np~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~ 382 (393)
....|.. |.+.-..|..+..||.+||. ..-..+...|+--..++.
T Consensus 11 ~~~~Cs~~~Ck~~~ll~f~C~~C~~~FC~---~HR~~e~H~C~~~~~~~~ 57 (63)
T 1x4v_A 11 FTNKCERAGCRQREMMKLTCERCSRNFCI---KHRHPLDHDCSGEGHPTS 57 (63)
T ss_dssp TCCCCCSTTCCCCCSSCCBCSSSCCBCCH---HHHSTTSSCCCSTTSCCC
T ss_pred cCCCCCccCCCCCCccceECCCCCcccCc---ccCCccCCcCCCCCCccc
Confidence 3568999 99986678888889999986 334456678886555443
No 136
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=39.16 E-value=21 Score=35.40 Aligned_cols=43 Identities=16% Similarity=0.461 Sum_probs=32.3
Q ss_pred CCCCCCCCCCCCCceecc--CccccccHHHHHHHhh----------cCCCCCCCCC
Q 016213 336 RTICPLCSQKRANPSVVT--VSGFVFCYACIFKYVS----------QYKRCPVTLM 379 (393)
Q Consensus 336 ~~~CpiC~~~~~np~~~~--~~G~vfCy~Ci~~~~~----------~~~~CPv~~~ 379 (393)
...|-+|.+.- +=..|. .|..+||..||...+- ..=.|=+|.-
T Consensus 93 ~~yCr~C~~Gg-~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 93 QSYCSICCSGE-TLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp BCSCTTTCCCS-SCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred cccceEcCCCC-eEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 56799999865 334565 7999999999999882 2247888873
No 137
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=39.13 E-value=5.3 Score=29.98 Aligned_cols=12 Identities=33% Similarity=0.526 Sum_probs=8.7
Q ss_pred hcCCCCCCCCCC
Q 016213 369 SQYKRCPVTLMP 380 (393)
Q Consensus 369 ~~~~~CPv~~~~ 380 (393)
.+.=+||+|+.+
T Consensus 38 Pddw~CP~Cga~ 49 (70)
T 1dx8_A 38 SDSFMCPACRSP 49 (70)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCCCCCCC
Confidence 344589999965
No 138
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=38.99 E-value=25 Score=29.39 Aligned_cols=36 Identities=14% Similarity=0.236 Sum_probs=24.3
Q ss_pred CCCCCCCCCCCCCCceeccCcccccc----------HHHHHHHhhcC
Q 016213 335 DRTICPLCSQKRANPSVVTVSGFVFC----------YACIFKYVSQY 371 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~~~G~vfC----------y~Ci~~~~~~~ 371 (393)
+...|..|...- |-=++-+||||.| ..-+.++.++.
T Consensus 33 ~~~~C~~C~~~~-~LwlCL~CG~vgCgr~~~~g~g~~~HA~~H~~~t 78 (129)
T 2g45_A 33 CGWKCSKCDMRE-NLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRET 78 (129)
T ss_dssp CBCCCSSSSCCS-SEEEETTTCCEEECCBCTTSCBCCSHHHHHHHHH
T ss_pred CCCcCccccCcC-ceEEeccCCccccCccccCCCCcCcHHHHHhhhc
Confidence 345799998774 5545556999999 34566666543
No 139
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=38.69 E-value=11 Score=27.97 Aligned_cols=12 Identities=33% Similarity=0.844 Sum_probs=9.5
Q ss_pred CCCCCCCCCCCC
Q 016213 336 RTICPLCSQKRA 347 (393)
Q Consensus 336 ~~~CpiC~~~~~ 347 (393)
-..||+|+.++.
T Consensus 8 iL~CP~ck~~L~ 19 (68)
T 2hf1_A 8 ILVCPLCKGPLV 19 (68)
T ss_dssp ECBCTTTCCBCE
T ss_pred heECCCCCCcCe
Confidence 457999998765
No 140
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=37.97 E-value=5.7 Score=28.34 Aligned_cols=13 Identities=15% Similarity=0.312 Sum_probs=9.1
Q ss_pred hhcCCCCCCCCCC
Q 016213 368 VSQYKRCPVTLMP 380 (393)
Q Consensus 368 ~~~~~~CPv~~~~ 380 (393)
|...-+||+|+.+
T Consensus 33 lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 33 IPDDWVCPLCGVG 45 (54)
T ss_dssp SCTTCBCTTTCCB
T ss_pred CCCCCcCcCCCCc
Confidence 3345589999965
No 141
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=37.42 E-value=15 Score=29.74 Aligned_cols=34 Identities=15% Similarity=0.268 Sum_probs=23.5
Q ss_pred CCCCCCCCCCCCCceeccCcccccc----HHHHHHHhhc
Q 016213 336 RTICPLCSQKRANPSVVTVSGFVFC----YACIFKYVSQ 370 (393)
Q Consensus 336 ~~~CpiC~~~~~np~~~~~~G~vfC----y~Ci~~~~~~ 370 (393)
...|..|+..-..-.-+ +||||+| ..-+.++.++
T Consensus 24 ~~~C~~C~~~~~~W~CL-~CG~vgCgr~~~~HA~~H~~~ 61 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCL-SCYQVYCGRYINGHMLQHHGN 61 (109)
T ss_dssp TCCCTTTCCCSSEEEET-TTCCEEECTTTTCHHHHHHHH
T ss_pred CCcCccccCCCCeeeee-ecCccccCCCcChHHHHHhcc
Confidence 45799999875544445 5999999 3555555554
No 142
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=37.22 E-value=28 Score=25.31 Aligned_cols=45 Identities=11% Similarity=0.121 Sum_probs=32.9
Q ss_pred CCCCCCCCCCCCCCceeccCccccccH-HHHHHHhhcCCCCCCCCCCC
Q 016213 335 DRTICPLCSQKRANPSVVTVSGFVFCY-ACIFKYVSQYKRCPVTLMPA 381 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~~~G~vfCy-~Ci~~~~~~~~~CPv~~~~~ 381 (393)
+-..|..|.+++.+-.....-|.+||. +|-.+-. ..+|-.|+..+
T Consensus 26 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f--~~~C~~C~~~~ 71 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMF--GPKGFGRGGAE 71 (76)
T ss_dssp TTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHS--SCCCSSCCCSS
T ss_pred CCCCccccCccCCCCceECcCCeEeeCHHHHHHHh--CccCCCcCCce
Confidence 467899999999885433458999999 6975433 35798888554
No 143
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.09 E-value=27 Score=26.39 Aligned_cols=40 Identities=18% Similarity=0.273 Sum_probs=25.8
Q ss_pred CCCCCCCCCCCCCceeccCccccccHHHHHHHhhcCCCCCCCCCCCCcC
Q 016213 336 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVE 384 (393)
Q Consensus 336 ~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~ 384 (393)
...|+.|.++|.+..+.. -|.+|...|. +|-.|+.++...
T Consensus 25 ~~~C~~C~~~I~~~~v~a-~~~~~H~~CF--------~C~~C~~~L~~~ 64 (90)
T 2dar_A 25 TPMCAHCNQVIRGPFLVA-LGKSWHPEEF--------NCAHCKNTMAYI 64 (90)
T ss_dssp CCBBSSSCCBCCSCEEEE-TTEEECTTTC--------BCSSSCCBCSSS
T ss_pred CCCCccCCCEecceEEEE-CCccccccCC--------ccCCCCCCCCCC
Confidence 457888888887665543 6666555443 677777776543
No 144
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=36.46 E-value=52 Score=23.97 Aligned_cols=47 Identities=17% Similarity=0.274 Sum_probs=33.9
Q ss_pred CCCCCCCCCCCCCCCCceeccCccccccHHHHHHHhhcC----CCCCCCCCC
Q 016213 333 PPDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQY----KRCPVTLMP 380 (393)
Q Consensus 333 p~~~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~----~~CPv~~~~ 380 (393)
|.....|-+|++. .+-..+..|..+|-..|+.--+... =.||.|...
T Consensus 9 ~~~~~~C~vC~~~-~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 9 LAPGARCGVCGDG-TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CCTTCCCTTTSCC-TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCCcCCCCCC-CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 3345679999875 3345677899999999986555432 389999753
No 145
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=36.14 E-value=17 Score=27.04 Aligned_cols=13 Identities=23% Similarity=0.618 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCCC
Q 016213 335 DRTICPLCSQKRA 347 (393)
Q Consensus 335 ~~~~CpiC~~~~~ 347 (393)
+-..||+|+.++.
T Consensus 7 ~iL~CP~ck~~L~ 19 (68)
T 2jr6_A 7 DILVCPVTKGRLE 19 (68)
T ss_dssp CCCBCSSSCCBCE
T ss_pred hheECCCCCCcCe
Confidence 4568999998765
No 146
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=35.14 E-value=16 Score=27.14 Aligned_cols=14 Identities=14% Similarity=0.161 Sum_probs=10.7
Q ss_pred CCCCCCCCCCCCCC
Q 016213 335 DRTICPLCSQKRAN 348 (393)
Q Consensus 335 ~~~~CpiC~~~~~n 348 (393)
+-..||+|+.+++-
T Consensus 9 eiL~CP~ck~~L~~ 22 (67)
T 2jny_A 9 EVLACPKDKGPLRY 22 (67)
T ss_dssp CCCBCTTTCCBCEE
T ss_pred HHhCCCCCCCcCeE
Confidence 45689999997653
No 147
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=34.85 E-value=13 Score=26.98 Aligned_cols=22 Identities=27% Similarity=0.644 Sum_probs=15.4
Q ss_pred CCCCCCCCCCCCCceeccCccc
Q 016213 336 RTICPLCSQKRANPSVVTVSGF 357 (393)
Q Consensus 336 ~~~CpiC~~~~~np~~~~~~G~ 357 (393)
-..||.|++...--.+++.|||
T Consensus 30 l~~c~~cG~~~~pH~vc~~CG~ 51 (60)
T 2zjr_Z 30 LTECPQCHGKKLSHHICPNCGY 51 (60)
T ss_dssp CEECTTTCCEECTTBCCTTTCB
T ss_pred ceECCCCCCEeCCceEcCCCCc
Confidence 4579999988555566666775
No 148
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.56 E-value=20 Score=25.60 Aligned_cols=31 Identities=26% Similarity=0.481 Sum_probs=15.4
Q ss_pred CCCCCCCCCCCCCceeccCccccccHHHHHH
Q 016213 336 RTICPLCSQKRANPSVVTVSGFVFCYACIFK 366 (393)
Q Consensus 336 ~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~ 366 (393)
-..|..|.+.+.+-.....-|.+||..|-.+
T Consensus 31 CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~ 61 (70)
T 2d8x_A 31 CFRCDLCQEVLADIGFVKNAGRHLCRPCHNR 61 (70)
T ss_dssp TSBCSSSCCBCSSSCCEEETTEEECHHHHHH
T ss_pred CCEeCCCCCcCCCCccEeECCeEECHHHhhh
Confidence 3455555555555432223555555555443
No 149
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.46 E-value=26 Score=24.91 Aligned_cols=32 Identities=25% Similarity=0.573 Sum_probs=19.1
Q ss_pred CCCCCCCCCCCCCceeccCccccccHHHHHHH
Q 016213 336 RTICPLCSQKRANPSVVTVSGFVFCYACIFKY 367 (393)
Q Consensus 336 ~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~ 367 (393)
-..|..|.+.+.+......-|.+||..|-.+.
T Consensus 31 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 62 (69)
T 2cur_A 31 CFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNF 62 (69)
T ss_dssp TTBCTTTCCBCTTSCEEECSSCEEEHHHHHHH
T ss_pred cCEECCCCCCCCCCccEeECCEEECHHHhHHH
Confidence 45666777766654433346677777666543
No 150
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.54 E-value=25 Score=25.21 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=19.5
Q ss_pred CCCCCCCCCCCCCceeccCccccccHHHHH
Q 016213 336 RTICPLCSQKRANPSVVTVSGFVFCYACIF 365 (393)
Q Consensus 336 ~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~ 365 (393)
-..|..|.+.+.+......-|.+||..|-.
T Consensus 35 CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~ 64 (72)
T 1x4l_A 35 CFNCKKCSLSLVGRGFLTERDDILCPDCGK 64 (72)
T ss_dssp TCBCSSSCCBCTTSCCEECSSSEECHHHHH
T ss_pred cCEeccCCCcCCCCccEeECCEEEChhHcC
Confidence 466777777776654433477777777754
No 151
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.48 E-value=27 Score=24.95 Aligned_cols=31 Identities=26% Similarity=0.504 Sum_probs=17.9
Q ss_pred CCCCCCCCCCCCCceeccCccccccHHHHHH
Q 016213 336 RTICPLCSQKRANPSVVTVSGFVFCYACIFK 366 (393)
Q Consensus 336 ~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~ 366 (393)
-..|..|.+++.+......-|.+||..|-.+
T Consensus 33 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 63 (72)
T 1wyh_A 33 CFLCSGCEQPLGSRSFVPDKGAHYCVPCYEN 63 (72)
T ss_dssp TCBCTTTCCBTTTSCEEEETTEEEEHHHHHH
T ss_pred cCeECCCCCcCCCCccCCcCCeEECHHHHHH
Confidence 4566666666665433333666777666543
No 152
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.17 E-value=18 Score=26.36 Aligned_cols=11 Identities=27% Similarity=0.782 Sum_probs=6.3
Q ss_pred CCCCCCCCCCC
Q 016213 337 TICPLCSQKRA 347 (393)
Q Consensus 337 ~~CpiC~~~~~ 347 (393)
..|+.|.++|.
T Consensus 10 ~~C~~C~~~I~ 20 (76)
T 2cu8_A 10 SKCPKCDKTVY 20 (76)
T ss_dssp CBCTTTCCBCC
T ss_pred CCCcCCCCEeE
Confidence 35666666555
No 153
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.16 E-value=38 Score=24.00 Aligned_cols=40 Identities=10% Similarity=0.226 Sum_probs=29.2
Q ss_pred CCCCCCCCCCCCCceeccCccccccHHHHHHHhhcCCCCCCCCCCCCcC
Q 016213 336 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVE 384 (393)
Q Consensus 336 ~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~ 384 (393)
...|+-|.++|....+. .-|.+|...|. +|-.|+.++...
T Consensus 5 ~~~C~~C~~~I~~~~~~-a~~~~~H~~CF--------~C~~C~~~L~~~ 44 (69)
T 2cur_A 5 SSGCVKCNKAITSGGIT-YQDQPWHADCF--------VCVTCSKKLAGQ 44 (69)
T ss_dssp CCCCSSSCCCCCTTCEE-ETTEEECTTTT--------BCTTTCCBCTTS
T ss_pred cCCCcccCCEeCcceEE-ECccccccCcC--------EECCCCCCCCCC
Confidence 45899999999876554 47777766553 688888887643
No 154
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=33.12 E-value=8.3 Score=33.14 Aligned_cols=10 Identities=20% Similarity=0.212 Sum_probs=7.5
Q ss_pred CCCCCCCCCC
Q 016213 372 KRCPVTLMPA 381 (393)
Q Consensus 372 ~~CPv~~~~~ 381 (393)
..||.||.++
T Consensus 149 ~~Cp~CG~~~ 158 (165)
T 2lcq_A 149 GVCPDCGSKV 158 (165)
T ss_dssp GBCTTTCCBE
T ss_pred CcCCCCCCcc
Confidence 4789998763
No 155
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=32.76 E-value=18 Score=23.89 Aligned_cols=34 Identities=21% Similarity=0.426 Sum_probs=22.1
Q ss_pred CCCCCCCCCCCCceeccCccccccHHHHHHHhhcC-----CCCCCCCCCCC
Q 016213 337 TICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQY-----KRCPVTLMPAT 382 (393)
Q Consensus 337 ~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~-----~~CPv~~~~~~ 382 (393)
..|++|++...+...+. ..+..+ -.|++|++...
T Consensus 2 ~~C~~C~~~f~~~~~l~------------~H~~~h~~~~~~~C~~C~~~f~ 40 (57)
T 1bbo_A 2 YICEECGIRXKKPSMLK------------KHIRTHTDVRPYHCTYCNFSFK 40 (57)
T ss_dssp CBCTTTCCBCSSHHHHH------------HHHHHTSSCCCEECSSSSCEES
T ss_pred CcCCCCcCcCCCHHHHH------------HHHHhcCCCCCccCCCCCchhc
Confidence 46899988887776553 223222 36999987643
No 156
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=32.75 E-value=13 Score=26.91 Aligned_cols=22 Identities=23% Similarity=0.567 Sum_probs=15.7
Q ss_pred CCCCCCCCCCCCCceeccCccc
Q 016213 336 RTICPLCSQKRANPSVVTVSGF 357 (393)
Q Consensus 336 ~~~CpiC~~~~~np~~~~~~G~ 357 (393)
-..||-|++...--.|++.|||
T Consensus 30 l~~c~~cGe~~~~H~vc~~CG~ 51 (60)
T 3v2d_5 30 LVPCPECKAMKPPHTVCPECGY 51 (60)
T ss_dssp CEECTTTCCEECTTSCCTTTCE
T ss_pred eeECCCCCCeecceEEcCCCCc
Confidence 4579999887666666666774
No 157
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=32.63 E-value=38 Score=29.48 Aligned_cols=45 Identities=16% Similarity=0.233 Sum_probs=32.8
Q ss_pred CCCCCCCCCCCCCCceeccCccccccHHHHHHHhhcCCCCCCCCCCC
Q 016213 335 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPA 381 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~ 381 (393)
+-..|..|.+.+.+......-|.+||..|-.+.. ..+|-.|++++
T Consensus 141 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f--~~kc~~C~~~~ 185 (192)
T 1b8t_A 141 SCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNF--GPKGFGFGQGA 185 (192)
T ss_dssp TTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHT--CCCCCCCCCCC
T ss_pred hcCCccccCCCCCCCcccccCCEEeCHHHHHHhc--CCcCCCCCCcc
Confidence 3577888888887644334589999999986654 35788998874
No 158
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=32.23 E-value=24 Score=21.69 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=16.9
Q ss_pred CCCCCCCCCCCCceeccCccccccHHH
Q 016213 337 TICPLCSQKRANPSVVTVSGFVFCYAC 363 (393)
Q Consensus 337 ~~CpiC~~~~~np~~~~~~G~vfCy~C 363 (393)
..||.|.+.+--.--+..-|.+|...|
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNCLDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCCCSSSSCCCGGG
T ss_pred CcCCccCCEEecceeEEECCeEecccC
Confidence 478999887665432223676666655
No 159
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=31.66 E-value=11 Score=32.86 Aligned_cols=23 Identities=30% Similarity=0.642 Sum_probs=16.7
Q ss_pred CCCCCCCCCCCC--CceeccCcccc
Q 016213 336 RTICPLCSQKRA--NPSVVTVSGFV 358 (393)
Q Consensus 336 ~~~CpiC~~~~~--np~~~~~~G~v 358 (393)
..+|++|+-... -|-+||+||+.
T Consensus 138 ~~~C~~CG~i~~~~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 138 VYICPICGYTAVDEAPEYCPVCGAP 162 (170)
T ss_dssp EEECTTTCCEEESCCCSBCTTTCCB
T ss_pred eeEeCCCCCeeCCCCCCCCCCCCCC
Confidence 567999998633 35688889873
No 160
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.53 E-value=31 Score=24.60 Aligned_cols=41 Identities=12% Similarity=0.193 Sum_probs=30.9
Q ss_pred CCCCCCCCCCCCCceeccCccccccHHHHHHHhhcCCCCCCCCCCCCcCC
Q 016213 336 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQ 385 (393)
Q Consensus 336 ~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~ 385 (393)
...|..|.++|.+..+. .-|..|...|. +|-.|+.++....
T Consensus 5 ~~~C~~C~~~I~~~~~~-a~~~~~H~~CF--------~C~~C~~~L~~~~ 45 (70)
T 2d8x_A 5 SSGCHQCGEFIIGRVIK-AMNNSWHPECF--------RCDLCQEVLADIG 45 (70)
T ss_dssp SSBCSSSCCBCCSCCEE-ETTEEECTTTS--------BCSSSCCBCSSSC
T ss_pred CCcCccCCCEecceEEE-ECcccccccCC--------EeCCCCCcCCCCc
Confidence 45899999999976554 47877777665 6888888876543
No 161
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.59 E-value=49 Score=24.37 Aligned_cols=28 Identities=18% Similarity=0.572 Sum_probs=17.2
Q ss_pred CCCCCCCCCCCCCceeccCccccccHHHH
Q 016213 336 RTICPLCSQKRANPSVVTVSGFVFCYACI 364 (393)
Q Consensus 336 ~~~CpiC~~~~~np~~~~~~G~vfCy~Ci 364 (393)
-..|..|.+++.+-.. ..-|.+||..|-
T Consensus 41 CF~C~~C~~~L~~~~f-~~~g~~yC~~cy 68 (79)
T 2cor_A 41 HFNCANCGKELTADAR-ELKGELYCLPCH 68 (79)
T ss_dssp TSBCSSSCCBCCTTCE-EETTEEECHHHH
T ss_pred CCEeCCCCCccCCCCE-eECCEEeCHHHH
Confidence 4566677766665544 336777776664
No 162
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.57 E-value=32 Score=24.58 Aligned_cols=29 Identities=28% Similarity=0.533 Sum_probs=14.2
Q ss_pred CCCCCCCCCCCCceeccCccccccHHHHH
Q 016213 337 TICPLCSQKRANPSVVTVSGFVFCYACIF 365 (393)
Q Consensus 337 ~~CpiC~~~~~np~~~~~~G~vfCy~Ci~ 365 (393)
..|..|.+.+.+-.....-|.+||..|-.
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~ 62 (72)
T 1x4k_A 34 FICHRCQQPIGTKSFIPKDNQNFCVPCYE 62 (72)
T ss_dssp TCCSSSCCCCCSSSEEEETTEEEEHHHHH
T ss_pred CcccccCCccCCCccCccCCeEECHHHHh
Confidence 45555555555443222355555555543
No 163
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=29.78 E-value=15 Score=32.90 Aligned_cols=30 Identities=13% Similarity=0.403 Sum_probs=23.9
Q ss_pred CCCCCCCCCCCCCCc-eeccCccccccHHHHH
Q 016213 335 DRTICPLCSQKRANP-SVVTVSGFVFCYACIF 365 (393)
Q Consensus 335 ~~~~CpiC~~~~~np-~~~~~~G~vfCy~Ci~ 365 (393)
....|++|++..-++ +++. -|-..|.+|.-
T Consensus 171 ~~~~C~~CGE~~~~~~~~~~-~g~~~C~~C~~ 201 (204)
T 2gvi_A 171 AKVRCDVCGEYTYEADAKLL-NGKPVCKPDYY 201 (204)
T ss_dssp CEEECTTTCCEEEGGGCEEE-TTEEECHHHHH
T ss_pred CceECCCCCCchhhcceeee-CCcEEChhhhc
Confidence 367899999987776 4454 89999999974
No 164
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=29.48 E-value=35 Score=26.51 Aligned_cols=39 Identities=13% Similarity=0.310 Sum_probs=29.2
Q ss_pred CCCCCCC--CCCCCCCceeccCccccccHHHHHHHhhcCCCCCC
Q 016213 335 DRTICPL--CSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPV 376 (393)
Q Consensus 335 ~~~~Cpi--C~~~~~np~~~~~~G~vfCy~Ci~~~~~~~~~CPv 376 (393)
....|.. |.+....|..+..||.+||.. + -..+...||-
T Consensus 24 ~~~~C~~~~Ck~~~~l~f~C~~C~~~FC~~--H-R~~e~H~C~~ 64 (86)
T 1wfe_A 24 KSYSCSFKGCTDVELVAVICPYCEKNFCLR--H-RHQSDHDCEK 64 (86)
T ss_dssp CCEECCSTTCCCEESSCEECTTTCCEECGG--G-CSTGGGTCSS
T ss_pred CCCCCCCcCCCCCCccceECCCCCcccccc--c-CCccCCCCCC
Confidence 3568999 999877888898899999973 2 2344567864
No 165
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=29.46 E-value=22 Score=25.14 Aligned_cols=40 Identities=10% Similarity=0.090 Sum_probs=24.3
Q ss_pred CCCCCCCCCCCCCCceeccCccccccHHHHHHHhh-cCCCCCCCCCCCC
Q 016213 335 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVS-QYKRCPVTLMPAT 382 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~-~~~~CPv~~~~~~ 382 (393)
....|++|.+.......+. -|+- ..-. +.-+|++|++...
T Consensus 16 ~~~~C~~C~k~f~~~~~l~--~H~~------~H~~~~~~~C~~C~k~f~ 56 (74)
T 2lce_A 16 KPYKCDRCQASFRYKGNLA--SHKT------VHTGEKPYRCNICGAQFN 56 (74)
T ss_dssp CSBCCTTSSCCBSCHHHHH--HHHH------HHCCCCSEECTTTCCEES
T ss_pred CCeECCCCCceeCCHHHHH--HHHH------HcCCCCCEECCCCCchhC
Confidence 4578999999988876553 2210 0111 1237999987643
No 166
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=29.33 E-value=19 Score=25.58 Aligned_cols=13 Identities=23% Similarity=0.626 Sum_probs=10.1
Q ss_pred CCCCCCCCCCCCC
Q 016213 335 DRTICPLCSQKRA 347 (393)
Q Consensus 335 ~~~~CpiC~~~~~ 347 (393)
+-..||+|+++++
T Consensus 9 ~iL~CP~c~~~L~ 21 (56)
T 2kpi_A 9 EILACPACHAPLE 21 (56)
T ss_dssp TSCCCSSSCSCEE
T ss_pred hheeCCCCCCcce
Confidence 4568999999754
No 167
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=29.29 E-value=22 Score=23.76 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=21.8
Q ss_pred CCCCCCCCCCCCceeccCccccccHHHHHHHhhcC-----CCCCCCCCCCC
Q 016213 337 TICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQY-----KRCPVTLMPAT 382 (393)
Q Consensus 337 ~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~-----~~CPv~~~~~~ 382 (393)
..|++|++...+...+. ..+..+ -.|++|++...
T Consensus 3 ~~C~~C~~~f~~~~~l~------------~H~~~h~~~~~~~C~~C~~~f~ 41 (60)
T 2adr_A 3 FVCEVCTRAFARQEHLK------------RHYRSHTNEKPYPCGLCNRAFT 41 (60)
T ss_dssp BCCTTTCCCBSCHHHHH------------HHHHTTTSSCSEECTTTCCEES
T ss_pred CcCCCCccccCCHHHHH------------HHHHHhCCCCCccCCCCCCccC
Confidence 57888888877765443 233322 36999987653
No 168
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.07 E-value=40 Score=24.48 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=23.2
Q ss_pred CCCCCCCCCCCCC-CceeccCccccccHHHHHHHhhc
Q 016213 335 DRTICPLCSQKRA-NPSVVTVSGFVFCYACIFKYVSQ 370 (393)
Q Consensus 335 ~~~~CpiC~~~~~-np~~~~~~G~vfCy~Ci~~~~~~ 370 (393)
+-..|..|.+++. +......-|.+||..|-.+...+
T Consensus 30 ~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~ 66 (73)
T 1wig_A 30 SCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTE 66 (73)
T ss_dssp TTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSS
T ss_pred CcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhcc
Confidence 4577888888876 33322237888888887654443
No 169
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.70 E-value=44 Score=25.19 Aligned_cols=34 Identities=24% Similarity=0.522 Sum_probs=26.7
Q ss_pred CCCCCCCCCCCCCCceeccCccccccHHHHHHHh
Q 016213 335 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYV 368 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~ 368 (393)
+-..|..|.+.+.+-.....-|.+||..|-.+..
T Consensus 50 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f 83 (90)
T 2dar_A 50 EEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFF 83 (90)
T ss_dssp TTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHT
T ss_pred cCCccCCCCCCCCCCEeEeECCEEECHHHHHHHc
Confidence 3588999999998765444589999999976544
No 170
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=28.12 E-value=25 Score=34.22 Aligned_cols=31 Identities=13% Similarity=0.092 Sum_probs=24.5
Q ss_pred CCCCCCCCCCCCC----CceeccCccccccHHHHH
Q 016213 335 DRTICPLCSQKRA----NPSVVTVSGFVFCYACIF 365 (393)
Q Consensus 335 ~~~~CpiC~~~~~----np~~~~~~G~vfCy~Ci~ 365 (393)
....|-.|++.+. .---|..||+++|..|..
T Consensus 356 ~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~ 390 (406)
T 2vrw_B 356 ETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLG 390 (406)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGG
T ss_pred CCCCCccccchhceeCCCCCCCCCCcCccchhhhh
Confidence 3568999999764 234577899999999986
No 171
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=28.09 E-value=19 Score=23.16 Aligned_cols=32 Identities=6% Similarity=0.063 Sum_probs=20.6
Q ss_pred CCCCCCCCCCCCCceeccCccccccHHHHHHHhhcC-----CCCCCCCC
Q 016213 336 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQY-----KRCPVTLM 379 (393)
Q Consensus 336 ~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~-----~~CPv~~~ 379 (393)
...|++|.+...+...+. .++..| -.|++|++
T Consensus 12 ~~~C~~C~k~f~~~~~L~------------~H~~~H~~~k~~~C~~C~k 48 (48)
T 2epr_A 12 QVACEICGKIFRDVYHLN------------RHKLSHSGEKPYSSGPSSG 48 (48)
T ss_dssp SEEETTTTEEESSHHHHH------------HHGGGSCSCCCCCSCCCCC
T ss_pred CeeCCCCCcccCCHHHHH------------HHHHhcCCCCCccCCCCCC
Confidence 567888888777765543 333322 47999974
No 172
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=28.06 E-value=30 Score=24.45 Aligned_cols=31 Identities=29% Similarity=0.664 Sum_probs=19.9
Q ss_pred CCCCCCCCCCCCCCceeccCcccccc-HHHHH
Q 016213 335 DRTICPLCSQKRANPSVVTVSGFVFC-YACIF 365 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~~~G~vfC-y~Ci~ 365 (393)
+-..|..|.+++.+......-|.+|| .+|-.
T Consensus 31 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~ 62 (65)
T 2iyb_E 31 ECFLCSCCSKCLIGQKFMPVEGMVFCSVECKK 62 (65)
T ss_dssp TTSBCTTTCCBCTTSCCEEETTEEESSHHHHH
T ss_pred CCEECCCCCCcCCCCceEEECCEEecCHHHhh
Confidence 45677777777766543334677777 67753
No 173
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=28.05 E-value=21 Score=25.44 Aligned_cols=9 Identities=33% Similarity=0.748 Sum_probs=7.1
Q ss_pred CCCCCCCCC
Q 016213 336 RTICPLCSQ 344 (393)
Q Consensus 336 ~~~CpiC~~ 344 (393)
...||.|+.
T Consensus 11 ~~~Cp~C~~ 19 (58)
T 1dl6_A 11 RVTCPNHPD 19 (58)
T ss_dssp CCSBTTBSS
T ss_pred cccCcCCCC
Confidence 457999986
No 174
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.75 E-value=45 Score=23.62 Aligned_cols=32 Identities=16% Similarity=0.596 Sum_probs=21.4
Q ss_pred CCCCCCCCCCCCCceeccCccccccHHHHHHH
Q 016213 336 RTICPLCSQKRANPSVVTVSGFVFCYACIFKY 367 (393)
Q Consensus 336 ~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~ 367 (393)
-..|..|.+++.+......-|.+||..|-.+-
T Consensus 31 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 62 (70)
T 2d8z_A 31 CFVCTACRKQLSGQRFTARDDFAYCLNCFCDL 62 (70)
T ss_dssp TSBCSSSCCBCTTSCCEESSSSEECHHHHHHH
T ss_pred CCccCCCCCcCCcCceEeeCCeEECHHHHHHH
Confidence 56778888877665433347888888776543
No 175
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.47 E-value=34 Score=24.83 Aligned_cols=38 Identities=11% Similarity=0.158 Sum_probs=27.5
Q ss_pred CCCCCCCCCCCCCceeccCccccccHHHHHHHhhcCCCCCCCCCCCC
Q 016213 336 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPAT 382 (393)
Q Consensus 336 ~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~ 382 (393)
...|+-|.++|....+ ..-|.+|--.| -+|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~v-~a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 5 SSGCDSCEKYITGRVL-EAGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CCSCSSSCCCCSSCCB-CCSSCCBCTTT--------SCCSSSCCCCC
T ss_pred cCCcccCCCEecCeeE-EeCCCCCCCCc--------CEeCCCCCCCC
Confidence 3579999999998654 44776665544 36778888876
No 176
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.41 E-value=45 Score=24.21 Aligned_cols=12 Identities=25% Similarity=0.534 Sum_probs=7.3
Q ss_pred CCCCCCCCCCCC
Q 016213 337 TICPLCSQKRAN 348 (393)
Q Consensus 337 ~~CpiC~~~~~n 348 (393)
..|+.|.++|..
T Consensus 6 ~~C~~C~~~I~~ 17 (76)
T 1x68_A 6 SGCVACSKPISG 17 (76)
T ss_dssp CCCTTTCCCCCT
T ss_pred CCCccCCCcccC
Confidence 356666666664
No 177
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=27.33 E-value=11 Score=22.65 Aligned_cols=8 Identities=38% Similarity=0.770 Sum_probs=3.8
Q ss_pred CCCCCCCC
Q 016213 373 RCPVTLMP 380 (393)
Q Consensus 373 ~CPv~~~~ 380 (393)
.||||.+.
T Consensus 8 qcpvcqq~ 15 (29)
T 3vhs_A 8 QCPVCQQM 15 (29)
T ss_dssp ECTTTCCE
T ss_pred eChHHHHh
Confidence 35555443
No 178
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=27.00 E-value=41 Score=23.58 Aligned_cols=30 Identities=13% Similarity=0.351 Sum_probs=15.3
Q ss_pred CCCCCCCCCCCCCceeccCccccccHHHHH
Q 016213 336 RTICPLCSQKRANPSVVTVSGFVFCYACIF 365 (393)
Q Consensus 336 ~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~ 365 (393)
-..|..|.+++.+......-|.+||..|-.
T Consensus 31 CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~ 60 (66)
T 1nyp_A 31 HFVCAKCEKPFLGHRHYERKGLAYCETHYN 60 (66)
T ss_dssp TCBCTTTCCBCSSSCCEEETTEEECHHHHH
T ss_pred cCEECCCCCCCCCCceEeECCcEECHHHHH
Confidence 345566666555433222356666655543
No 179
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=26.56 E-value=78 Score=24.62 Aligned_cols=33 Identities=21% Similarity=0.431 Sum_probs=24.3
Q ss_pred CCCCCCCCCCCCCCce-eccCccccccHHHHHHH
Q 016213 335 DRTICPLCSQKRANPS-VVTVSGFVFCYACIFKY 367 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~-~~~~~G~vfCy~Ci~~~ 367 (393)
+...|+||..--.+.- -+.+||-||--.|+.+-
T Consensus 14 ~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCcccCccccccccceeccccccccccHhhcccc
Confidence 4568999996433322 25579999999999984
No 180
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=26.54 E-value=36 Score=37.10 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=26.1
Q ss_pred CCCCCCCCCCCCCCceeccCccccccH----------HHHHHHhhcCC
Q 016213 335 DRTICPLCSQKRANPSVVTVSGFVFCY----------ACIFKYVSQYK 372 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~~~G~vfCy----------~Ci~~~~~~~~ 372 (393)
....|..|+... |-=+|-+||||.|- ..+..+.++.+
T Consensus 214 ~~~~C~~c~~~~-~lw~CL~Cg~vgC~r~~~~~~~~~~ha~~H~~~~~ 260 (854)
T 3ihp_A 214 CGWKCSKCDMRE-NLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETG 260 (854)
T ss_dssp SCCCCSSSCCCS-SEEEETTTCCEEECCBC-CCCBCCSHHHHHHHHHC
T ss_pred CCCcCcCcCCcC-ceEEEecCCCccccccccCCCCCchHHHHHHhhcC
Confidence 346899999876 54444459999995 47777766544
No 181
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.51 E-value=37 Score=24.21 Aligned_cols=42 Identities=14% Similarity=0.298 Sum_probs=29.5
Q ss_pred CCCCCCCCCCCCCc-eeccCccccccHHHHHHHhhcCCCCCCCCCCCCcCC
Q 016213 336 RTICPLCSQKRANP-SVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQ 385 (393)
Q Consensus 336 ~~~CpiC~~~~~np-~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~ 385 (393)
...|.-|.++|... .++..-|.+|-..|- +|-.|+.++....
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF--------~C~~C~~~L~~~~ 47 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEYGGQTWHEHCF--------LCSGCEQPLGSRS 47 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECSTTCCEETTTC--------BCTTTCCBTTTSC
T ss_pred CCCCccCCCccccCccEEEECccccCcccC--------eECCCCCcCCCCc
Confidence 46899999999953 444457877766666 5777887776543
No 182
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=26.36 E-value=25 Score=26.18 Aligned_cols=13 Identities=31% Similarity=0.925 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCCC
Q 016213 335 DRTICPLCSQKRA 347 (393)
Q Consensus 335 ~~~~CpiC~~~~~ 347 (393)
+-..||+|+.++.
T Consensus 7 ~iL~CP~ck~~L~ 19 (70)
T 2js4_A 7 DILVCPVCKGRLE 19 (70)
T ss_dssp CCCBCTTTCCBEE
T ss_pred hheECCCCCCcCE
Confidence 4568999999765
No 183
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=25.55 E-value=50 Score=24.79 Aligned_cols=34 Identities=18% Similarity=0.296 Sum_probs=25.7
Q ss_pred CCCCCCCCCCCCCceeccCccccccHHHHHHHhh
Q 016213 336 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVS 369 (393)
Q Consensus 336 ~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~ 369 (393)
-..|-.|.+.+.+-.....-|.+||..|-.+-+.
T Consensus 51 CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~ 84 (89)
T 1x64_A 51 CFVCADCNLNLKQKGYFFVEGELYCETHARARTS 84 (89)
T ss_dssp TCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSS
T ss_pred CCEecCCCCCCCCCCeEeECCEEECHHHHHHHhC
Confidence 4789999999987543334899999999866543
No 184
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=25.55 E-value=15 Score=23.26 Aligned_cols=17 Identities=18% Similarity=0.501 Sum_probs=11.8
Q ss_pred CCCCCCCCCCCCCceec
Q 016213 336 RTICPLCSQKRANPSVV 352 (393)
Q Consensus 336 ~~~CpiC~~~~~np~~~ 352 (393)
...|++|.+.......+
T Consensus 10 ~~~C~~C~k~f~~~~~l 26 (45)
T 2epq_A 10 PYSCPVCGLRFKRKDRM 26 (45)
T ss_dssp SSEETTTTEECSCHHHH
T ss_pred CCcCCCCCcccCCHHHH
Confidence 46788888877666544
No 185
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=25.38 E-value=20 Score=29.23 Aligned_cols=39 Identities=15% Similarity=0.260 Sum_probs=27.5
Q ss_pred CCCCCCCCCCCCCceeccCccccccHHHHHHHhhcCCCCCCCCCCCC
Q 016213 336 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPAT 382 (393)
Q Consensus 336 ~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~ 382 (393)
...|+-|.++|.+..++..-|..|-..| -+|-.|+.++.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTT--------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccc--------cCcCcCCCccc
Confidence 4689999999998754444676655444 36778887775
No 186
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=24.90 E-value=46 Score=28.86 Aligned_cols=43 Identities=19% Similarity=0.370 Sum_probs=30.1
Q ss_pred CCCCCCCCCCCCCceecc--CccccccHHHHHHHhhc----------CCCCCCCCC
Q 016213 336 RTICPLCSQKRANPSVVT--VSGFVFCYACIFKYVSQ----------YKRCPVTLM 379 (393)
Q Consensus 336 ~~~CpiC~~~~~np~~~~--~~G~vfCy~Ci~~~~~~----------~~~CPv~~~ 379 (393)
...|-+|.+.- +=..+. .|-.+||..||...+-. .=.|=+|.-
T Consensus 79 ~~yC~wC~~Gg-~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 79 QSYCTICCGGR-EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp BSSCTTTSCCS-EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred cceeeEecCCC-eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 56799999854 223343 47799999999888742 236888873
No 187
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.79 E-value=79 Score=23.16 Aligned_cols=40 Identities=13% Similarity=0.198 Sum_probs=28.4
Q ss_pred CCCCCCCCCCCCCceeccCccccccHHHHHHHhhcCCCCCCCCCCCCcC
Q 016213 336 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVE 384 (393)
Q Consensus 336 ~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~ 384 (393)
...|+-|.++|.+..+. .-|.+|--.| -+|-.|+.+++..
T Consensus 15 ~~~C~~C~~~I~~~~v~-a~~~~~H~~C--------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 15 KYICQKCHAIIDEQPLI-FKNDPYHPDH--------FNCANCGKELTAD 54 (79)
T ss_dssp CCBCTTTCCBCCSCCCC-CSSSCCCTTT--------SBCSSSCCBCCTT
T ss_pred CCCCccCCCEecceEEE-ECcceeCCCC--------CEeCCCCCccCCC
Confidence 56899999999976554 3676655443 3788888887644
No 188
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=24.18 E-value=35 Score=24.17 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=23.5
Q ss_pred CCCCCCCCCCCCCCceeccCccccccHHHHHHHhhcC-----CCCCCCCCCCC
Q 016213 335 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQY-----KRCPVTLMPAT 382 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~-----~~CPv~~~~~~ 382 (393)
....|++|.+...+...+. .++..+ -.|++|++...
T Consensus 17 ~~~~C~~C~~~f~~~~~l~------------~H~~~h~~~~~~~C~~C~~~f~ 57 (77)
T 2cot_A 17 RRYKCDECGKSFSHSSDLS------------KHRRTHTGEKPYKCDECGKAFI 57 (77)
T ss_dssp CSSBCSSSCCBCSCHHHHH------------HHHTTTCCSCSEECSSSCCEES
T ss_pred CCEECCCCCcccCCHHHHH------------HHHHHcCCCcCeeCCCCCCccC
Confidence 3578999999887765543 233322 36899887643
No 189
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.06 E-value=50 Score=24.25 Aligned_cols=10 Identities=30% Similarity=0.627 Sum_probs=5.2
Q ss_pred CCCCCCCCCC
Q 016213 338 ICPLCSQKRA 347 (393)
Q Consensus 338 ~CpiC~~~~~ 347 (393)
.|..|.++|.
T Consensus 17 ~C~~C~~~I~ 26 (82)
T 2ehe_A 17 TCAECQQLIG 26 (82)
T ss_dssp BCTTTCCBCC
T ss_pred cCccCCCccc
Confidence 4555555554
No 190
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=23.97 E-value=17 Score=24.05 Aligned_cols=39 Identities=10% Similarity=0.142 Sum_probs=23.3
Q ss_pred CCCCCCCCCCCCCceeccCccccccHHHHHHHh-hcCCCCCCCCCCCC
Q 016213 336 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYV-SQYKRCPVTLMPAT 382 (393)
Q Consensus 336 ~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~-~~~~~CPv~~~~~~ 382 (393)
...|++|++...+...+. .|+- ..- +..-.|++|++...
T Consensus 4 ~~~C~~C~~~f~~~~~l~--~H~~------~h~~~~~~~C~~C~~~f~ 43 (57)
T 3uk3_C 4 SRECSYCGKFFRSNYYLN--IHLR------THTGEKPYKCEFCEYAAA 43 (57)
T ss_dssp -CBCTTTCCBCSCHHHHH--HHHH------HHHCCCCEECSSSSCEES
T ss_pred CccCCCCcchhCChHHHH--HHHH------HcCCCCCcCCCCCcchhC
Confidence 468999999888876553 2211 111 12247999987643
No 191
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=23.79 E-value=62 Score=25.90 Aligned_cols=39 Identities=15% Similarity=0.302 Sum_probs=30.7
Q ss_pred CCCCCCCCCCCCCceeccCccccccHHHHHHHhhcCCCCCCCCCCCC
Q 016213 336 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPAT 382 (393)
Q Consensus 336 ~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~ 382 (393)
...|+-|.++|.+..++..-|..+-..|- +|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF--------~C~~C~~~L~ 43 (122)
T 1m3v_A 5 WKRCAGCGGKIADRFLLYAMDSYWHSRCL--------KCSSCQAQLG 43 (122)
T ss_dssp CCCBSSSSSCCCSSCCEEETTEEECHHHH--------CCSSSCCCTT
T ss_pred CCCCcccCCEeCCcEEEEECCceeHhhCC--------CcCCCCCccc
Confidence 45899999999988644457877777775 7889998885
No 192
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=23.72 E-value=45 Score=24.12 Aligned_cols=10 Identities=20% Similarity=0.507 Sum_probs=5.2
Q ss_pred CCCCCCCCCC
Q 016213 338 ICPLCSQKRA 347 (393)
Q Consensus 338 ~CpiC~~~~~ 347 (393)
.|+-|.++|.
T Consensus 17 ~C~~C~~~I~ 26 (77)
T 2egq_A 17 KCAGCKNPIT 26 (77)
T ss_dssp CCSSSCCCCC
T ss_pred cCcccCCccc
Confidence 4555555554
No 193
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.67 E-value=42 Score=24.64 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=20.1
Q ss_pred CCCCCCCCCCCCceeccCccccccHHHHHHHhhcCCCCCCCCCCCC
Q 016213 337 TICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPAT 382 (393)
Q Consensus 337 ~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~ 382 (393)
..|+.|.++|....+ ..-|.+|...| -+|-.|++++.
T Consensus 16 ~~C~~C~~~I~~~~v-~a~~~~wH~~C--------F~C~~C~~~L~ 52 (81)
T 1v6g_A 16 TRCFSCDQFIEGEVV-SALGKTYHPDC--------FVCAVCRLPFP 52 (81)
T ss_dssp CBCTTTCCBCCSCCE-EETTEEECTTT--------SSCSSSCCCCC
T ss_pred CcCccccCEeccceE-EECCceeCccC--------CccccCCCCCC
Confidence 367777777764433 23555444333 25566666654
No 194
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=23.32 E-value=69 Score=24.17 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=32.1
Q ss_pred CCCCCCCCCC--CCCCCCCceeccCccccccHHHHHHHhhcCCCCCCCCC
Q 016213 332 LPPDRTICPL--CSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLM 379 (393)
Q Consensus 332 ~p~~~~~Cpi--C~~~~~np~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~ 379 (393)
.|.-...|.. |.+.---|..+..||.+||-. ....+.+.||--..
T Consensus 10 ~~~~g~~Cs~~~C~~~dflpf~C~~C~~~FC~~---HR~~e~H~C~~~~~ 56 (75)
T 1wys_A 10 ELDIGQHCQVQHCRQRDFLPFVCDGCSGIFCLE---HRSKDSHGCSEVNV 56 (75)
T ss_dssp CCCCCCCCSCTTTCCCSCCCEECTTTCCEECST---TCSSGGGTCCCCSS
T ss_pred ccccCCCcCcccCCCccceeeECcccCcCcCcc---cCCccccCCCCCcc
Confidence 4445678988 999866698898899999972 23334567875543
No 195
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=23.32 E-value=67 Score=22.18 Aligned_cols=10 Identities=30% Similarity=0.484 Sum_probs=7.3
Q ss_pred CCCCCCCCCC
Q 016213 372 KRCPVTLMPA 381 (393)
Q Consensus 372 ~~CPv~~~~~ 381 (393)
-+||.||..+
T Consensus 24 IrCpyCGyri 33 (48)
T 4ayb_P 24 VRCPYCGYKI 33 (48)
T ss_dssp SCCTTTCCSC
T ss_pred cccCccCcEE
Confidence 4788888664
No 196
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A*
Probab=23.22 E-value=12 Score=38.63 Aligned_cols=51 Identities=16% Similarity=0.286 Sum_probs=33.7
Q ss_pred CCCCCCCCCCCCCCce-ecc-----CccccccHHHHHHHhhcCCCCCCCC-----CCCCcCCeeeCcc
Q 016213 335 DRTICPLCSQKRANPS-VVT-----VSGFVFCYACIFKYVSQYKRCPVTL-----MPATVEQIRRLFH 391 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~-~~~-----~~G~vfCy~Ci~~~~~~~~~CPv~~-----~~~~~~~l~riy~ 391 (393)
+...|..|...+-|-. ++. ..+.|||..|+.+- |+.+. ..-+.++|..+|.
T Consensus 457 ~~~~C~~C~~~lFn~~~v~~~~~~~~~~~v~C~~Ca~~~------~~~l~~~~v~~ry~~eeL~~~yd 518 (531)
T 3avr_A 457 PAHYCSICEVEVFDLLFVTNESNSRKTYIVHCQDCARKT------SGNLENFVVLEQYKMEDLMQVYD 518 (531)
T ss_dssp CCEECTTTCCEECSEEEEEECTTCSSEEEEECHHHHHHH------CTTCTTCEEEECSCHHHHHHHHH
T ss_pred CCeeccccchhheeeEEEEecCCCCCCCCcCChhhhhhc------CccccceEEEEEcCHHHHHHHHH
Confidence 3568999999988875 432 13569999999862 33333 2345666666653
No 197
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.17 E-value=72 Score=23.98 Aligned_cols=32 Identities=16% Similarity=0.404 Sum_probs=18.2
Q ss_pred CCCCCCCCCCCCCceeccCccccccHHHHHHH
Q 016213 336 RTICPLCSQKRANPSVVTVSGFVFCYACIFKY 367 (393)
Q Consensus 336 ~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~ 367 (393)
-..|-.|.+.+.+-.....-|.+||..|-.+-
T Consensus 42 CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~ 73 (91)
T 2d8y_A 42 CFRCSYCNNKLSLGTYASLHGRIYCKPHFNQL 73 (91)
T ss_dssp TCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHH
T ss_pred CCeeCCCCCCCCCCCcEeECCEEECHHHHHHH
Confidence 35566666666654333336667776666443
No 198
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.11 E-value=40 Score=24.75 Aligned_cols=33 Identities=15% Similarity=0.296 Sum_probs=18.8
Q ss_pred CCCCCCCCCCCCC-c-eeccCccccccHHHHHHHh
Q 016213 336 RTICPLCSQKRAN-P-SVVTVSGFVFCYACIFKYV 368 (393)
Q Consensus 336 ~~~CpiC~~~~~n-p-~~~~~~G~vfCy~Ci~~~~ 368 (393)
-..|..|.+.+.+ . -++..-|.++|..|-.+.+
T Consensus 41 CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~ 75 (81)
T 1x6a_A 41 CFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVV 75 (81)
T ss_dssp SCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHH
T ss_pred cCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHh
Confidence 4566777777643 2 2222366777777765544
No 199
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.84 E-value=44 Score=24.55 Aligned_cols=28 Identities=11% Similarity=0.290 Sum_probs=12.8
Q ss_pred CCCCCCCCCCCCceeccC-ccccccHHHH
Q 016213 337 TICPLCSQKRANPSVVTV-SGFVFCYACI 364 (393)
Q Consensus 337 ~~CpiC~~~~~np~~~~~-~G~vfCy~Ci 364 (393)
..|..|.+.+.+...... -|.+||..|-
T Consensus 42 F~C~~C~~~L~~~~f~~~~~g~~yC~~cy 70 (81)
T 2dlo_A 42 FTCVVCHRGLDGIPFTVDATSQIHCIEDF 70 (81)
T ss_dssp CBCSSSCCBCTTSCEECCTTCCCEEHHHH
T ss_pred cCcccCCCccCCCeeEECCCCEEECHHHH
Confidence 445555555544332211 3455555554
No 200
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.80 E-value=36 Score=24.99 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=26.9
Q ss_pred CCCCCCCCCCCCCceeccCccccccHHHHHHHhhc
Q 016213 336 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQ 370 (393)
Q Consensus 336 ~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~ 370 (393)
-..|..|.+.+.+-.....-|.+||..|-.+-+..
T Consensus 41 CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p 75 (79)
T 1x62_A 41 CYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSG 75 (79)
T ss_dssp TTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSS
T ss_pred cCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCC
Confidence 57899999999875433458999999998766543
No 201
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.61 E-value=60 Score=23.01 Aligned_cols=42 Identities=14% Similarity=0.295 Sum_probs=30.0
Q ss_pred CCCCCCCCCCCCCc-eeccCccccccHHHHHHHhhcCCCCCCCCCCCCcCC
Q 016213 336 RTICPLCSQKRANP-SVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQ 385 (393)
Q Consensus 336 ~~~CpiC~~~~~np-~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~ 385 (393)
...|+.|.++|... .++..-|.+|-..|- +|-.|+.++....
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF--------~C~~C~~~L~~~~ 47 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEYKGSSWHETCF--------ICHRCQQPIGTKS 47 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEETTEEEETTTT--------CCSSSCCCCCSSS
T ss_pred CCCCccCCCcccCCceEEEECcCeecccCC--------cccccCCccCCCc
Confidence 45899999999964 344447877776664 6788888876543
No 202
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=22.56 E-value=19 Score=25.42 Aligned_cols=40 Identities=10% Similarity=0.076 Sum_probs=23.2
Q ss_pred CCCCCCCCCCCCCCceeccCccccccHHHHHHHh-hcCCCCCCCCCCCC
Q 016213 335 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYV-SQYKRCPVTLMPAT 382 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~-~~~~~CPv~~~~~~ 382 (393)
....|++|.+...+...+. -|+- ... +..-+|++|++...
T Consensus 13 k~~~C~~C~k~f~~~~~L~--~H~~------~h~~~~~~~C~~C~~~f~ 53 (72)
T 1x6e_A 13 KPYGCVECGKAFSRSSILV--QHQR------VHTGEKPYKCLECGKAFS 53 (72)
T ss_dssp CCEECSSSCCEESSHHHHH--HHHH------GGGCSCCEECSSSCCEES
T ss_pred CCccCCCCCCccCCHHHHH--HHHH------hcCCCCCeECCCCCcccC
Confidence 3568999988877766553 1210 011 11237999987643
No 203
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.54 E-value=37 Score=25.19 Aligned_cols=39 Identities=13% Similarity=0.278 Sum_probs=21.1
Q ss_pred CCCCCCCCCCCCCceeccCccccccHHHHHHHhhcCCCCCCCCCCCC
Q 016213 336 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPAT 382 (393)
Q Consensus 336 ~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~ 382 (393)
...|+-|.++|.+..++..-|..+-..| -+|-.|+.+++
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLALDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEETTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeEEEECCccccccc--------CCcCcCCCCcC
Confidence 3468888877764322222454444333 25666666654
No 204
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.75 E-value=51 Score=20.56 Aligned_cols=18 Identities=17% Similarity=0.268 Sum_probs=13.7
Q ss_pred CCCCCCCCCCCCCceecc
Q 016213 336 RTICPLCSQKRANPSVVT 353 (393)
Q Consensus 336 ~~~CpiC~~~~~np~~~~ 353 (393)
...|++|++.......+.
T Consensus 12 ~~~C~~C~k~F~~~~~L~ 29 (46)
T 2ytn_A 12 PYKCNECGKVFTQNSHLA 29 (46)
T ss_dssp SCBCTTTCCBCSSHHHHH
T ss_pred CeECCCCCCeeCCHHHHH
Confidence 578999999888776553
No 205
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.61 E-value=74 Score=23.19 Aligned_cols=31 Identities=19% Similarity=0.336 Sum_probs=15.7
Q ss_pred CCCCCCCCCCCCCceeccCccccccHHHHHH
Q 016213 336 RTICPLCSQKRANPSVVTVSGFVFCYACIFK 366 (393)
Q Consensus 336 ~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~ 366 (393)
-..|..|.+.+.+-.....-|.+||..|-.+
T Consensus 43 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 73 (82)
T 1x63_A 43 CFTCSNCKQVIGTGSFFPKGEDFYCVTCHET 73 (82)
T ss_dssp TCCCSSSCCCCTTSCEEEETTEEEEHHHHHH
T ss_pred cCchhhCCCccCCCccEeeCCEEECHHHHHH
Confidence 3455666665555432223566666555543
No 206
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=21.52 E-value=56 Score=23.88 Aligned_cols=47 Identities=11% Similarity=0.249 Sum_probs=29.0
Q ss_pred CCCCCCCCCCCCCC---------------ceeccCccccccHHH-HHHHhhcC-----CCCCCCCCCC
Q 016213 335 DRTICPLCSQKRAN---------------PSVVTVSGFVFCYAC-IFKYVSQY-----KRCPVTLMPA 381 (393)
Q Consensus 335 ~~~~CpiC~~~~~n---------------p~~~~~~G~vfCy~C-i~~~~~~~-----~~CPv~~~~~ 381 (393)
....|++|.+...+ |-.++.||..|-..- +..++..+ -.|++|++..
T Consensus 7 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 74 (96)
T 2dmd_A 7 GPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYAS 74 (96)
T ss_dssp CCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEE
T ss_pred cCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCcc
Confidence 35689999887653 334566777775533 33444433 2688888754
No 207
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.46 E-value=71 Score=23.18 Aligned_cols=33 Identities=18% Similarity=0.411 Sum_probs=21.2
Q ss_pred CCCCCCCCCCCCCCceeccCccccccHHHHHHH
Q 016213 335 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKY 367 (393)
Q Consensus 335 ~~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~ 367 (393)
+-..|..|.+++.+-.....-|.+||..|-.+-
T Consensus 40 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 72 (80)
T 2cuq_A 40 ECLVCTGCQTPLAGQQFTSRDEDPYCVACFGEL 72 (80)
T ss_dssp TTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHH
T ss_pred hhCCcccCCCcCCCCeeEeECCEEECHHHHHHH
Confidence 356777777777654433347778887776543
No 208
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=21.09 E-value=21 Score=27.57 Aligned_cols=12 Identities=25% Similarity=0.766 Sum_probs=9.2
Q ss_pred CCCCCCCCCCCC
Q 016213 336 RTICPLCSQKRA 347 (393)
Q Consensus 336 ~~~CpiC~~~~~ 347 (393)
...||||+.++.
T Consensus 8 ~~~~PlCG~~L~ 19 (95)
T 2k5c_A 8 MAKCPICGSPLK 19 (95)
T ss_dssp CEECSSSCCEEC
T ss_pred cccCCcCCCccC
Confidence 357999998754
No 209
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=20.90 E-value=42 Score=22.15 Aligned_cols=34 Identities=18% Similarity=0.385 Sum_probs=22.6
Q ss_pred CCCCCCCCCCCCCceeccCccccccHHHHHHHhh-cC-----CCCCCCCCCC
Q 016213 336 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVS-QY-----KRCPVTLMPA 381 (393)
Q Consensus 336 ~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~-~~-----~~CPv~~~~~ 381 (393)
...|++|.+.......+. .+++ .| -.|++|++..
T Consensus 12 ~~~C~~C~k~f~~~~~L~------------~H~~~~H~~~k~~~C~~C~k~F 51 (54)
T 2eps_A 12 PYICQSCGKGFSRPDHLN------------GHIKQVHTSERPHKCQVWVSGP 51 (54)
T ss_dssp CEECSSSCCEESSHHHHH------------HHHHHTSCCCCCCCSSSSCCSS
T ss_pred CeECCCCCcccCCHHHHH------------HHHHHhcCCCCCccCCCCCCCC
Confidence 467999988877765543 3333 22 4899999754
No 210
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=20.67 E-value=25 Score=29.22 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=22.7
Q ss_pred CCCCCCCCC-------------CCCceeccCccccccH-----HHHHHHhhc
Q 016213 337 TICPLCSQK-------------RANPSVVTVSGFVFCY-----ACIFKYVSQ 370 (393)
Q Consensus 337 ~~CpiC~~~-------------~~np~~~~~~G~vfCy-----~Ci~~~~~~ 370 (393)
..|+.|... ..|--++-+||||.|- .-+.++.++
T Consensus 29 ~~C~~C~~~~~~~~~~~~~~~~~~~Lw~CL~CG~vgCgr~~~~~Ha~~H~~~ 80 (126)
T 2i50_A 29 NICQDCKTDNKVKDKAEEETEEKPSVWLCLKCGHQGCGRNSQEQHALKHYLT 80 (126)
T ss_dssp SSCHHHHTCTTSSCSSCTTTCCCCCEEEETTTCCEEECTTSSSCHHHHHHHS
T ss_pred CcCccccccccccccccccccccccceeeeeCCccccCCCCcchHHHHHHhC
Confidence 469988874 3444455569999993 446666665
No 211
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.59 E-value=50 Score=24.92 Aligned_cols=41 Identities=20% Similarity=0.370 Sum_probs=26.4
Q ss_pred CCCCCCCCCCCCCceeccCccccccHHHHHHHhhcCCCCCCCCCCCCcC
Q 016213 336 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVE 384 (393)
Q Consensus 336 ~~~CpiC~~~~~np~~~~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~ 384 (393)
...|.-|.+.|.....+..-|.+|-..|- +|=.|+.++...
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~~~H~~CF--------~C~~C~~~L~~~ 55 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLLANQQVFHISCF--------RCSYCNNKLSLG 55 (91)
T ss_dssp SCBCTTTCCBCCTTSEEECSSSEEETTTC--------BCTTTCCBCCTT
T ss_pred CCcCccCCCccCCceeEEECCCEECCCCC--------eeCCCCCCCCCC
Confidence 56899999999864333447765554442 566677666543
No 212
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=20.47 E-value=56 Score=28.97 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=17.8
Q ss_pred CCCCCCCCCCC----CCCc----eeccCccccccHH
Q 016213 335 DRTICPLCSQK----RANP----SVVTVSGFVFCYA 362 (393)
Q Consensus 335 ~~~~CpiC~~~----~~np----~~~~~~G~vfCy~ 362 (393)
....||.|+.. +.|. .||..||.|.--.
T Consensus 20 ~~~~CPECGs~~t~IV~D~erGE~VCsdCGLVLEEr 55 (197)
T 3k1f_M 20 IVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDK 55 (197)
T ss_dssp CCCCCTTTCCSSCCEEEEGGGTEEEETTTCBBCCCC
T ss_pred cCeECcCCCCcCCeEEEeCCCCEEEEcCCCCCcCCc
Confidence 35689999983 3332 5666777776443
No 213
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=20.37 E-value=39 Score=28.99 Aligned_cols=42 Identities=19% Similarity=0.332 Sum_probs=28.8
Q ss_pred CCCCCCCCCC---CCCc-eeccCccccccHHHHHHHhhcCC--CCCCCC
Q 016213 336 RTICPLCSQK---RANP-SVVTVSGFVFCYACIFKYVSQYK--RCPVTL 378 (393)
Q Consensus 336 ~~~CpiC~~~---~~np-~~~~~~G~vfCy~Ci~~~~~~~~--~CPv~~ 378 (393)
...|.+|.++ +.|. .++..|.+-+|-.|-. |+..++ .|=+|.
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~ 115 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCH 115 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHH
T ss_pred CccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHH
Confidence 4589999997 4454 5788899999999983 443322 354443
No 214
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.30 E-value=56 Score=20.27 Aligned_cols=18 Identities=17% Similarity=0.246 Sum_probs=13.6
Q ss_pred CCCCCCCCCCCCCceecc
Q 016213 336 RTICPLCSQKRANPSVVT 353 (393)
Q Consensus 336 ~~~CpiC~~~~~np~~~~ 353 (393)
...|++|++.......+.
T Consensus 12 ~~~C~~C~k~f~~~~~L~ 29 (46)
T 2eop_A 12 PHECRECGKSFSFNSQLI 29 (46)
T ss_dssp SCBCTTTCCBCSSHHHHH
T ss_pred CeeCCCCCchhCCHHHHH
Confidence 578999999888776543
Done!