Query 016214
Match_columns 393
No_of_seqs 237 out of 1140
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 09:49:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016214.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016214hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.2 5.2E-06 1.8E-10 67.5 9.7 64 127-190 40-104 (110)
2 2i68_A Protein EMRE; transmemb 98.2 3.7E-06 1.3E-10 71.1 7.1 64 127-190 40-104 (137)
3 2i68_A Protein EMRE; transmemb 97.6 6.7E-05 2.3E-09 63.3 6.0 42 318-359 64-105 (137)
4 3b5d_A Multidrug transporter E 96.8 0.005 1.7E-07 49.6 8.2 41 318-358 64-104 (110)
5 3l1l_A Arginine/agmatine antip 31.6 1E+02 0.0036 29.3 7.5 23 341-363 410-432 (445)
6 2jo1_A Phospholemman; FXYD1, N 28.4 46 0.0016 24.0 3.0 18 342-359 22-39 (72)
7 2zxe_G FXYD10, phospholemman-l 17.2 78 0.0027 23.0 2.3 19 342-360 25-43 (74)
8 1q90_G Cytochrome B6F complex 15.3 1.4E+02 0.0048 18.6 2.8 26 340-365 8-34 (37)
9 2jwa_A Receptor tyrosine-prote 13.1 1E+02 0.0035 20.1 1.9 23 345-367 22-44 (44)
10 3hd7_B Syntaxin-1A; membrane p 12.1 73 0.0025 24.8 1.2 29 33-61 81-109 (109)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.25 E-value=5.2e-06 Score=67.48 Aligned_cols=64 Identities=14% Similarity=0.210 Sum_probs=57.9
Q ss_pred HHHHHHHHHhhhcccchHHHHHH-HHhhHHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhhcc
Q 016214 127 QAAISLMYSFGYLYLPVSTYSLI-CATQLAFNALFSFFLNSLKFDPYIINSLVLLTISSILLAFN 190 (393)
Q Consensus 127 ~~~~~~l~~~sl~ylsvs~asll-~~~~pift~l~s~i~~kek~t~~~~~sl~l~~~Gv~ll~~~ 190 (393)
.+...+++..++++.|+|.+..+ ..+.|++++++++++++|++|+.++.|+.+.+.|++++...
T Consensus 40 ~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 35667788899999999999888 89999999999999999999999999999999999986543
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.15 E-value=3.7e-06 Score=71.06 Aligned_cols=64 Identities=14% Similarity=0.210 Sum_probs=47.2
Q ss_pred HHHHHHHHHhhhcccchHHHHHH-HHhhHHHHHHHHHHHccCCCChhHHHHHHHHHHHHHHhhcc
Q 016214 127 QAAISLMYSFGYLYLPVSTYSLI-CATQLAFNALFSFFLNSLKFDPYIINSLVLLTISSILLAFN 190 (393)
Q Consensus 127 ~~~~~~l~~~sl~ylsvs~asll-~~~~pift~l~s~i~~kek~t~~~~~sl~l~~~Gv~ll~~~ 190 (393)
.+...++|+.+++++|++.+..+ .++.|++++++++++++|++++.+++|+.+.++|++++...
T Consensus 40 ~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 35667899999999999988887 89999999999999999999999999999999999987543
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.63 E-value=6.7e-05 Score=63.27 Aligned_cols=42 Identities=21% Similarity=0.303 Sum_probs=30.8
Q ss_pred hccchhHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHhhc
Q 016214 318 STLGLPFVPVLAVIIFHEKMSGLKVIAMVLAIWGFLSYFYHH 359 (393)
Q Consensus 318 ~~l~~pv~~i~svi~f~E~lt~~~iiG~~lil~G~~~~~~~~ 359 (393)
..+.+.++.++|+++|+|++++.+++|+++++.|++..+..+
T Consensus 64 ~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 64 SGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 456677789999999999999999999999999999987643
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=96.76 E-value=0.005 Score=49.62 Aligned_cols=41 Identities=22% Similarity=0.312 Sum_probs=35.5
Q ss_pred hccchhHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHhh
Q 016214 318 STLGLPFVPVLAVIIFHEKMSGLKVIAMVLAIWGFLSYFYH 358 (393)
Q Consensus 318 ~~l~~pv~~i~svi~f~E~lt~~~iiG~~lil~G~~~~~~~ 358 (393)
..+.+..+.+.++++|||+++..+++|+++++.|++.....
T Consensus 64 ~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 64 SGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred hhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 34556678899999999999999999999999999987654
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=31.60 E-value=1e+02 Score=29.28 Aligned_cols=23 Identities=9% Similarity=-0.148 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHhhccccc
Q 016214 341 KVIAMVLAIWGFLSYFYHHYLDD 363 (393)
Q Consensus 341 ~iiG~~lil~G~~~~~~~~~~~~ 363 (393)
.+.|.++++.|+..|.+.+++++
T Consensus 410 ~~~~~~~~~~g~~~y~~~~~~~~ 432 (445)
T 3l1l_A 410 VMWSFVTLMVITAMYALNYNRLH 432 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Confidence 45688888999999987654433
No 6
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=28.37 E-value=46 Score=23.99 Aligned_cols=18 Identities=39% Similarity=0.453 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 016214 342 VIAMVLAIWGFLSYFYHH 359 (393)
Q Consensus 342 iiG~~lil~G~~~~~~~~ 359 (393)
+++.++.+.|+++....|
T Consensus 22 ifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 22 VIAGILFILGILIVLSRR 39 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCc
Confidence 455556667766665544
No 7
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=17.18 E-value=78 Score=22.99 Aligned_cols=19 Identities=21% Similarity=0.426 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 016214 342 VIAMVLAIWGFLSYFYHHY 360 (393)
Q Consensus 342 iiG~~lil~G~~~~~~~~~ 360 (393)
+++.++.+.|+++...+|-
T Consensus 25 ifA~vLfi~GI~iilS~kc 43 (74)
T 2zxe_G 25 IVAAVLCVIGIIILLAGKC 43 (74)
T ss_dssp HHHHHHHHHHHHHHTTTC-
T ss_pred hhHHHHHHHHHHHHHcCcc
Confidence 4555666777776665543
No 8
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=15.33 E-value=1.4e+02 Score=18.57 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=14.7
Q ss_pred HHHHHHHHH-HHHHHHHHhhccccccc
Q 016214 340 LKVIAMVLA-IWGFLSYFYHHYLDDFK 365 (393)
Q Consensus 340 ~~iiG~~li-l~G~~~~~~~~~~~~~~ 365 (393)
.-++|++-+ ++|....-|.+|++.++
T Consensus 8 GIVlGlipvtlaGLfv~Ay~QyrRg~~ 34 (37)
T 1q90_G 8 GIVLGLVPVTIAGLFVTAYLQYLRGDL 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred hHHHhhHHHHHHHHHHHHHHHHhhccc
Confidence 334555443 78888888888766544
No 9
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=13.06 E-value=1e+02 Score=20.06 Aligned_cols=23 Identities=9% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhccccccccc
Q 016214 345 MVLAIWGFLSYFYHHYLDDFKSK 367 (393)
Q Consensus 345 ~~lil~G~~~~~~~~~~~~~~~~ 367 (393)
.++++.|.....|-+.+..++||
T Consensus 22 ll~vi~~l~~~~~~RRR~~~~kK 44 (44)
T 2jwa_A 22 LLVVVLGVVFGILIKRRQQKIRK 44 (44)
T ss_dssp HHHHHHHHHHHHHHHHHCSCCCC
T ss_pred HHHHHHHHHHHhheehhhhhccC
No 10
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=12.08 E-value=73 Score=24.81 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=0.0
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 016214 33 SQQNWKWWIRICFYILFLLGGQSVATLLG 61 (393)
Q Consensus 33 ~~~~~~~w~~~~~~~~~~~~~~s~~~ll~ 61 (393)
+.++++||+++...+++++++...+..++
T Consensus 81 ~~rkk~~i~l~~~~i~~~i~~~~~~~~~~ 109 (109)
T 3hd7_B 81 KARRKKIMIIICCVILGIIIASTIGGIFG 109 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred hccCcceehHHHHHHHHHHHHHHhccccC
Done!