Query 016214
Match_columns 393
No_of_seqs 237 out of 1140
Neff 7.6
Searched_HMMs 13730
Date Mon Mar 25 09:49:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016214.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016214hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 24.1 37 0.0027 17.9 2.8 17 206-222 2-18 (27)
2 d1ppjd2 f.23.11.1 (D:196-241) 9.8 81 0.0059 19.1 2.2 23 338-360 9-31 (46)
3 d3dtub2 f.17.2.1 (B:30-129) Ba 7.1 1.4E+02 0.01 20.7 2.9 33 330-363 25-57 (100)
4 d1fftb2 f.17.2.1 (B:27-117) Cy 6.0 79 0.0058 21.8 0.9 20 345-364 28-47 (91)
5 d3ehbb2 f.17.2.1 (B:1-107) Bac 5.7 2.2E+02 0.016 19.9 3.4 38 323-361 23-61 (107)
6 d2iuba2 f.17.3.1 (A:286-349) M 4.0 1.8E+02 0.013 18.2 1.6 10 349-358 51-60 (64)
7 d1u19a_ f.13.1.2 (A:) Rhodopsi 3.8 6.2E+02 0.045 19.9 5.6 27 35-61 33-59 (348)
8 d2r6gf1 e.70.1.1 (F:13-260) Ma 3.7 9.2E+02 0.067 19.1 8.6 34 152-185 33-66 (248)
9 d1xmea1 f.24.1.1 (A:14-562) Ba 3.6 1.6E+02 0.012 27.3 1.4 20 338-357 454-473 (549)
10 d2axtl1 f.23.31.1 (L:1-37) Pho 2.8 5E+02 0.036 14.4 3.0 19 205-223 17-35 (37)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=24.08 E-value=37 Score=17.85 Aligned_cols=17 Identities=18% Similarity=0.335 Sum_probs=14.3
Q ss_pred HHhHHHHHHHHHHHHHH
Q 016214 206 AIGFICTVGGSAGYGLI 222 (393)
Q Consensus 206 ~~G~ll~L~aa~~~al~ 222 (393)
++|.+.+-+++++||.|
T Consensus 2 vlgli~~tl~glf~aay 18 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAY 18 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHH
Confidence 47888888899999877
No 2
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.79 E-value=81 Score=19.14 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcc
Q 016214 338 SGLKVIAMVLAIWGFLSYFYHHY 360 (393)
Q Consensus 338 t~~~iiG~~lil~G~~~~~~~~~ 360 (393)
-+.+++.++.++.++..|...+.
T Consensus 9 mG~Kv~~~l~~l~~l~yy~KR~~ 31 (46)
T d1ppjd2 9 MGLKMLLMMGLLLPLVYAMKRHK 31 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677888888888877766543
No 3
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=7.12 E-value=1.4e+02 Score=20.68 Aligned_cols=33 Identities=6% Similarity=0.140 Sum_probs=19.6
Q ss_pred HHHhCcchhhHHHHHHHHHHHHHHHHHhhccccc
Q 016214 330 VIIFHEKMSGLKVIAMVLAIWGFLSYFYHHYLDD 363 (393)
Q Consensus 330 vi~f~E~lt~~~iiG~~lil~G~~~~~~~~~~~~ 363 (393)
+..+|+..- .-.+++.+++.|...|...+++.+
T Consensus 25 i~~l~~~v~-~i~~~I~~~V~~~l~~~~~~~r~~ 57 (100)
T d3dtub2 25 IHWLDGFIL-VIIAAITIFVTLLILYAVWRFHEK 57 (100)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHBTT
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhcc
Confidence 444555433 335566667788888877666543
No 4
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=6.02 E-value=79 Score=21.84 Aligned_cols=20 Identities=15% Similarity=0.066 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHhhcccccc
Q 016214 345 MVLAIWGFLSYFYHHYLDDF 364 (393)
Q Consensus 345 ~~lil~G~~~~~~~~~~~~~ 364 (393)
.++.+.|...|..-||++++
T Consensus 28 v~v~V~~~~~~~~~ryR~~~ 47 (91)
T d1fftb2 28 VVIPAILMAVGFAWKYRASN 47 (91)
T ss_dssp TTTHHHHHHHTTTTTTTTST
T ss_pred HHHHHHHHHHhhheeeeccC
Confidence 34557788888877877553
No 5
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=5.75 E-value=2.2e+02 Score=19.87 Aligned_cols=38 Identities=8% Similarity=0.010 Sum_probs=22.2
Q ss_pred hHHHHH-HHHHhCcchhhHHHHHHHHHHHHHHHHHhhccc
Q 016214 323 PFVPVL-AVIIFHEKMSGLKVIAMVLAIWGFLSYFYHHYL 361 (393)
Q Consensus 323 pv~~i~-svi~f~E~lt~~~iiG~~lil~G~~~~~~~~~~ 361 (393)
+.+..+ .+..||+.+ ..-.+++.+.+.|...|..-+++
T Consensus 23 ~~Sp~ae~i~~lh~~v-~~i~~~I~~~V~~~~~~~~~~~r 61 (107)
T d3ehbb2 23 ASSPLAHDQQWLDHFV-LYIITAVTIFVCLLLLICIVRFN 61 (107)
T ss_dssp CCSHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHSB
T ss_pred CCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhh
Confidence 344443 455566654 33355666667788887766664
No 6
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=3.95 E-value=1.8e+02 Score=18.17 Aligned_cols=10 Identities=10% Similarity=0.335 Sum_probs=4.1
Q ss_pred HHHHHHHHhh
Q 016214 349 IWGFLSYFYH 358 (393)
Q Consensus 349 l~G~~~~~~~ 358 (393)
+.++..+.+-
T Consensus 51 ~~~~~~~~~f 60 (64)
T d2iuba2 51 VIAVIMVVYF 60 (64)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 7
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.75 E-value=6.2e+02 Score=19.93 Aligned_cols=27 Identities=15% Similarity=0.411 Sum_probs=15.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHH
Q 016214 35 QNWKWWIRICFYILFLLGGQSVATLLG 61 (393)
Q Consensus 35 ~~~~~w~~~~~~~~~~~~~~s~~~ll~ 61 (393)
.++++-++..++.++.++|..+..++.
T Consensus 33 ~~~~~~~~~~~~~ii~v~gi~gN~lvi 59 (348)
T d1u19a_ 33 EPWQFSMLAAYMFLLIMLGFPINFLTL 59 (348)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHee
Confidence 445555666666666666655555444
No 8
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=3.67 E-value=9.2e+02 Score=19.11 Aligned_cols=34 Identities=9% Similarity=-0.001 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHccCCCChhHHHHHHHHHHHHH
Q 016214 152 TQLAFNALFSFFLNSLKFDPYIINSLVLLTISSI 185 (393)
Q Consensus 152 ~~pift~l~s~i~~kek~t~~~~~sl~l~~~Gv~ 185 (393)
...+.+++..++++.+|.-++|++-=.++++.+.
T Consensus 33 ~~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~F 66 (248)
T d2r6gf1 33 TTLILSSAGLYIFANRKAYAWRYVYPGMAGMGLF 66 (248)
T ss_dssp HHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHheEEEEEccCccceehhhhHHHHHHHH
Confidence 4456678888889999988888775544444333
No 9
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase subunit I {Thermus thermophilus [TaxId: 274]}
Probab=3.64 E-value=1.6e+02 Score=27.33 Aligned_cols=20 Identities=20% Similarity=0.424 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHHHHHHHh
Q 016214 338 SGLKVIAMVLAIWGFLSYFY 357 (393)
Q Consensus 338 t~~~iiG~~lil~G~~~~~~ 357 (393)
+....+|..+...|.+++.+
T Consensus 454 ~~~~~igg~i~~~g~l~f~~ 473 (549)
T d1xmea1 454 MVFNVLAGIVLLVALLLFIY 473 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35567888888888887765
No 10
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.84 E-value=5e+02 Score=14.37 Aligned_cols=19 Identities=5% Similarity=0.076 Sum_probs=14.5
Q ss_pred hHHhHHHHHHHHHHHHHHH
Q 016214 205 YAIGFICTVGGSAGYGLIL 223 (393)
Q Consensus 205 ~~~G~ll~L~aa~~~al~~ 223 (393)
-..|.++.+.-++.|+-|+
T Consensus 17 Ly~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 17 LYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4688888888888877664
Done!