Query 016215
Match_columns 393
No_of_seqs 156 out of 1141
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 04:51:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016215.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016215hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0192 MetK S-adenosylmethion 100.0 1E-187 3E-192 1368.6 38.2 380 3-390 4-383 (388)
2 PLN02243 S-adenosylmethionine 100.0 3E-185 7E-190 1366.2 42.3 383 1-386 1-386 (386)
3 PTZ00104 S-adenosylmethionine 100.0 9E-184 2E-188 1359.7 41.1 386 2-392 9-397 (398)
4 PRK05250 S-adenosylmethionine 100.0 7E-184 2E-188 1357.0 40.1 378 3-390 2-379 (384)
5 PRK12459 S-adenosylmethionine 100.0 1E-183 3E-188 1356.2 40.0 379 1-390 1-381 (386)
6 TIGR01034 metK S-adenosylmethi 100.0 3E-183 6E-188 1349.1 39.2 374 5-390 1-374 (377)
7 KOG1506 S-adenosylmethionine s 100.0 2E-174 5E-179 1246.6 34.6 380 2-388 4-383 (383)
8 PF02773 S-AdoMet_synt_C: S-ad 100.0 4E-83 8.7E-88 561.6 9.2 138 240-382 1-138 (138)
9 PF02772 S-AdoMet_synt_M: S-ad 100.0 4.4E-56 9.5E-61 384.7 12.0 119 117-238 2-120 (120)
10 PF00438 S-AdoMet_synt_N: S-ad 100.0 1.5E-48 3.2E-53 328.5 6.7 100 2-101 1-100 (100)
11 PF01941 AdoMet_Synthase: S-ad 98.9 2.8E-07 6.1E-12 94.2 21.8 304 11-340 25-380 (396)
12 PRK04439 S-adenosylmethionine 98.9 2.6E-07 5.7E-12 94.5 21.3 303 12-342 26-382 (399)
13 COG1812 MetK Archaeal S-adenos 98.1 0.00025 5.5E-09 72.2 18.0 289 11-322 25-361 (400)
14 TIGR00590 pcna proliferating c 68.1 38 0.00082 33.0 9.3 170 129-322 60-241 (259)
15 COG1325 Predicted exosome subu 57.3 16 0.00035 33.7 4.3 51 302-374 3-53 (149)
16 PRK11023 outer membrane lipopr 52.7 24 0.00051 33.0 4.7 43 17-59 121-164 (191)
17 PRK11198 LysM domain/BON super 48.3 32 0.0007 30.9 4.7 40 20-60 24-63 (147)
18 PF02980 FokI_C: Restriction e 45.4 21 0.00045 32.8 3.0 37 278-314 77-113 (142)
19 PF14084 DUF4264: Protein of u 43.7 6.8 0.00015 30.3 -0.3 39 98-142 11-49 (52)
20 PF00352 TBP: Transcription fa 33.8 51 0.0011 26.8 3.4 57 185-242 3-64 (86)
21 PF04208 MtrA: Tetrahydrometha 32.1 54 0.0012 31.2 3.6 41 34-75 18-65 (176)
22 KOG3447 Mitochondrial/chloropl 31.3 17 0.00037 33.3 0.2 12 249-260 95-106 (150)
23 TIGR02889 spore_YpeB germinati 30.2 2.5E+02 0.0055 30.0 8.6 97 38-141 262-371 (435)
24 cd01269 PLX Pollux (PLX) Phosp 28.3 1.7E+02 0.0038 26.6 6.0 43 51-93 6-48 (129)
25 COG2441 Predicted butyrate kin 28.2 20 0.00043 36.8 0.1 50 255-319 185-242 (374)
26 PRK10568 periplasmic protein; 27.6 1E+02 0.0022 29.0 4.7 53 23-78 61-113 (203)
27 PRK11023 outer membrane lipopr 24.4 1.2E+02 0.0025 28.4 4.4 42 18-60 44-88 (191)
28 PF02171 Piwi: Piwi domain; I 23.9 61 0.0013 31.4 2.6 22 134-155 279-300 (302)
29 PRK04964 hypothetical protein; 23.1 64 0.0014 26.1 2.0 20 117-148 14-33 (66)
30 PRK14053 methyltransferase; Pr 23.0 1E+02 0.0022 29.7 3.7 42 33-75 17-62 (194)
31 KOG2978 Dolichol-phosphate man 22.9 87 0.0019 30.7 3.3 37 305-342 197-233 (238)
32 PRK00394 transcription factor; 22.1 1.5E+02 0.0033 27.8 4.6 81 186-299 1-85 (179)
33 cd04518 TBP_archaea archaeal T 22.0 1.3E+02 0.0029 28.1 4.2 81 186-299 2-86 (174)
34 COG1419 FlhF Flagellar GTP-bin 22.0 1E+02 0.0023 32.7 3.9 54 317-371 284-357 (407)
35 cd04517 TLF TBP-like factors ( 21.6 1.5E+02 0.0031 27.7 4.4 57 186-242 3-62 (174)
36 PF06786 UPF0253: Uncharacteri 21.6 73 0.0016 25.8 2.1 20 117-148 14-33 (66)
37 PF07918 CAP160: CAP160 repeat 21.5 48 0.001 22.6 0.9 10 289-298 14-23 (27)
38 PRK00964 tetrahydromethanopter 20.7 1E+02 0.0023 30.3 3.4 42 33-75 20-69 (225)
39 COG2101 SPT15 TATA-box binding 20.5 1.4E+02 0.0029 28.7 4.0 56 186-241 8-67 (185)
40 cd04518 TBP_archaea archaeal T 20.1 1.8E+02 0.004 27.1 4.8 58 185-242 92-153 (174)
No 1
>COG0192 MetK S-adenosylmethionine synthetase [Coenzyme metabolism]
Probab=100.00 E-value=1.2e-187 Score=1368.59 Aligned_cols=380 Identities=60% Similarity=0.988 Sum_probs=370.9
Q ss_pred cceeeccccCCCCCchhhhhhHHHHHHHHhhcCCCCcEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCCCCC
Q 016215 3 TFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDD 82 (393)
Q Consensus 3 ~~lfTSESV~~GHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~V~i~GEitt~a~vd~~~ivR~~l~~IGY~~~~ 82 (393)
.+|||||||+|||||||||||||||||+||+|||+|||||||+|++|+|+|+|||+|+++||+++++|++|++|||++++
T Consensus 4 ~~lFTSESVseGHPDKi~DqISDaILD~~L~~Dp~srVAcEt~v~tg~v~i~GEitt~~~vd~~~~~r~~I~~IGY~~~~ 83 (388)
T COG0192 4 YFLFTSESVSEGHPDKICDQISDAILDAILKQDPNSRVACETLVTTGLVVIAGEITTSAYVDIVNIARKTIKEIGYTESD 83 (388)
T ss_pred cceeeeccccCCCChHHHHHHhHHHHHHHHhcCCCceEEEEEEEecCeEEEEEEEecCccccHHHHHHHHHHHhCCCccc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEEeecCCChhhhcccCCCCCCCCCCCCCCcceeeEeEecCCCCCCCCchHHHHHHHHHHHHHHHHcCCCC
Q 016215 83 VGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCS 162 (393)
Q Consensus 83 ~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~l~~~l~~~Rk~g~~~ 162 (393)
+|||+++|.|+++|++|||||+|||++..+ ..+++|||||||||||||||||+||||||+|||+|++||+++||+|.++
T Consensus 84 ~Gfd~~t~~vl~~i~~QSpDIaqgVd~~~~-~~~~~GAGDQGimFGyA~~ET~~lMPlpI~lAH~l~~r~a~~Rk~g~l~ 162 (388)
T COG0192 84 YGFDAKTCAVLVAIGEQSPDIAQGVDEADE-ELDEIGAGDQGIMFGYACNETPELMPLPISLAHRLLRRLAEVRKNGELP 162 (388)
T ss_pred cCcCccceEEEeecccCChhHHHhhhhccc-chhhcCCCcceeEeeeecCCcccccChHHHHHHHHHHHHHHHHhcCCCc
Confidence 999999999999999999999999997432 3568999999999999999999999999999999999999999999999
Q ss_pred cccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhccccCCCCCCCCCcEEEECCCCCeEEcC
Q 016215 163 WLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGG 242 (393)
Q Consensus 163 ~l~pD~KtQVtv~Y~~~~g~~~p~rv~tiviS~QH~~~v~~~~l~~~i~e~vi~~v~~~~~~~~~t~~~INPtG~FviGG 242 (393)
|||||+||||||+|++ ++ +|++|++||+|+||++++++++||+.++|+||+|++|+++++++|+|+|||||||||||
T Consensus 163 ~LrpD~KsQVtv~Y~~-~~--~p~~idtIvvStQH~~~i~~~~l~~~v~e~iI~pv~~~~~l~~~tk~~INPtGrFViGG 239 (388)
T COG0192 163 WLRPDAKSQVTVEYED-NG--KPVRIDTIVVSTQHDPDISQEQLREDVIEEIIKPVLPEELLDDKTKYFINPTGRFVIGG 239 (388)
T ss_pred ccCCCcceeEEEEEcC-CC--CceeEEEEEEEeccCcccCHHHHHHHHHHHHHhhhccHhhcCcCceEEECCCCCeeeCC
Confidence 9999999999999986 35 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCceEEEecCCCccccccccCcCCCCCCccchhhHHHHHHHHHHHHhccccccEEEEEEEeccccceeEEEEe
Q 016215 243 PHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDS 322 (393)
Q Consensus 243 P~~DtGLTGRKiiVDTYGg~a~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~cevQlsYAIG~a~Pvsi~V~t 322 (393)
|+||||||||||||||||||+||||||||||||||||||||||||||||||||||||+|||||||||||+|+|+||+|||
T Consensus 240 P~gD~GLTGRKIIVDTYGG~a~HGGGAFSGKDptKVDRSaAYaARyvAKNiVAAglA~~ceVQlsYAIGva~PvSi~Vdt 319 (388)
T COG0192 240 PQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLADRCEVQLSYAIGVAEPVSISVDT 319 (388)
T ss_pred CCccccCccceEEEEcCCCccCCCCccCCCCCCcccchHHHHHHHHHHHHHHHhhhhhheEEEEEeEecccCceEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHhCCCChHhHHhhhccccccccccccccccccCCCCCCCCCccccccCcccC
Q 016215 323 YGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 390 (393)
Q Consensus 323 fgt~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~p~~~iY~~ta~yGHFGr~~~~fpWE~~dk~~~~~ 390 (393)
|||+++++++|.++|+++|||||++||+.|+|++| ||++||+||||||++ +|||||+|+++.|+
T Consensus 320 fgT~kvse~~i~~~v~~~FdlrP~gIi~~LdL~~p---iY~~tAaYGHFGr~~-~~pWEk~dkv~~lk 383 (388)
T COG0192 320 FGTGKVSEEKIEEAVRKVFDLRPAGIIKMLDLLRP---IYRKTAAYGHFGRED-DFPWEKLDKVDELK 383 (388)
T ss_pred cCCcccCHHHHHHHHHHhcCCCHHHHHHHhccCCc---cchhcccccccCCCC-CCCccchhhHHHHH
Confidence 99999999999999999999999999999999999 999999999999987 89999999998765
No 2
>PLN02243 S-adenosylmethionine synthase
Probab=100.00 E-value=3.1e-185 Score=1366.19 Aligned_cols=383 Identities=94% Similarity=1.460 Sum_probs=369.8
Q ss_pred CCcceeeccccCCCCCchhhhhhHHHHHHHHhhcCCCCcEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCCC
Q 016215 1 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVS 80 (393)
Q Consensus 1 ~~~~lfTSESV~~GHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~V~i~GEitt~a~vd~~~ivR~~l~~IGY~~ 80 (393)
|.+||||||||++||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++||++++||++|++|||++
T Consensus 1 ~~~~lfTSESV~eGHPDKicDqISDaILDa~L~qDp~srVA~Et~v~~~~V~i~GEitt~a~vd~~~ivR~~i~~IGY~~ 80 (386)
T PLN02243 1 METFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCREIGFVS 80 (386)
T ss_pred CCceEEEecCCCCCCChHHHHHHHHHHHHHHHhhCCCCcEEEEEEEECCEEEEEEEECCCCcCCHHHHHHHHHHHhCCCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceEEEEeecCCChhhhcccCCCCCCCCCCCCCCcceeeEeEecCCCCCCCCchHHHHHHHHHHHHHHHHcCC
Q 016215 81 DDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNST 160 (393)
Q Consensus 81 ~~~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~l~~~l~~~Rk~g~ 160 (393)
+++|||+++|.|++.|++|||||+|||+.+.+...+++|||||||||||||||||+|||||++|||+|++||+++||+|.
T Consensus 81 ~~~gfd~~t~~v~~~i~~QSpdIa~gV~~~~~~~~~~iGAGDQGimfGYA~~ET~e~MPlpi~lAh~l~~~l~~~Rk~~~ 160 (386)
T PLN02243 81 DDVGLDADKCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGARLTEVRKNGT 160 (386)
T ss_pred cccCcCCCceEEEecCCCCChhHhhccccccccccccCCCCcceEEeeeecCCCcccCChHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999985422222358999999999999999999999999999999999999999999
Q ss_pred CCcccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhccccCCCCCCCCCcEEEECCCCCeEE
Q 016215 161 CSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI 240 (393)
Q Consensus 161 ~~~l~pD~KtQVtv~Y~~~~g~~~p~rv~tiviS~QH~~~v~~~~l~~~i~e~vi~~v~~~~~~~~~t~~~INPtG~Fvi 240 (393)
++||||||||||||+|+++.+.++|+||++||||+||++++++++|+++|+|+||+|++|+++++++|+||||||||||+
T Consensus 161 ~~~l~PD~KsQVtv~Y~~~~~~~~p~rv~tivvS~QH~~~v~~~~l~~~i~e~vi~~v~~~~~~~~~t~~~INPtGrFvi 240 (386)
T PLN02243 161 CPWLRPDGKTQVTVEYKNEGGAMVPIRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI 240 (386)
T ss_pred CCeecCCCceEEEEEeecCCCCccceeEeEEEEeeccCCCCCHHHHHHHHHHHHhHHhcCcccCCCCcEEEECCCCCeEe
Confidence 99999999999999997543534599999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccCCceEEEecCCCccccccccCcCCCCCCccchhhHHHHHHHHHHHHhccccccEEEEEEEeccccceeEEE
Q 016215 241 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFV 320 (393)
Q Consensus 241 GGP~~DtGLTGRKiiVDTYGg~a~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~cevQlsYAIG~a~Pvsi~V 320 (393)
|||.||||||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++||||+|
T Consensus 241 GGP~~D~GLTGRKIiVDTYGG~~~hGGGAFSGKDptKVDRSaAY~AR~iAKniVaaglA~rceVQlsYAIGva~Pvsi~V 320 (386)
T PLN02243 241 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVAAGLARRCIVQVSYAIGVPEPLSVFV 320 (386)
T ss_pred CCCcccccccCceEEEEcCCCccCCCCccccCCCcchhhhHHHHHHHHHHHHHHhhcCCCeeEEEEEEEcccCcCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHhCCCChHhHHhhhcccc---ccccccccccccccCCCCCCCCCccccccC
Q 016215 321 DSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKR---GGNGRFLKTAAYGHFGRDDPDFTWEVVKPL 386 (393)
Q Consensus 321 ~tfgt~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~---p~~~iY~~ta~yGHFGr~~~~fpWE~~dk~ 386 (393)
|||||+++++++|.++|+++|||||++||++|+|++ | ||++||+||||||++++|||||+|+|
T Consensus 321 ~TfGT~~~~d~~i~~~v~~~Fdlrp~~Ii~~L~L~~~~~p---iY~~ta~yGHFGr~~~~fpWE~~d~~ 386 (386)
T PLN02243 321 DTYGTGKIPDKEILKIVKENFDFRPGMIAINLDLKRGGNG---RFQKTAAYGHFGRDDPDFTWEVVKPL 386 (386)
T ss_pred ecCCCCcCCHHHHHHHHHHHcCCCHHHHHHhcCCCCCCCC---cchhccccCCCCCCCCCCCccccCCC
Confidence 999999999999999999999999999999999999 8 99999999999999889999999986
No 3
>PTZ00104 S-adenosylmethionine synthase; Provisional
Probab=100.00 E-value=9.2e-184 Score=1359.71 Aligned_cols=386 Identities=73% Similarity=1.157 Sum_probs=371.8
Q ss_pred CcceeeccccCCCCCchhhhhhHHHHHHHHhhcCCCCcEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCCCC
Q 016215 2 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSD 81 (393)
Q Consensus 2 ~~~lfTSESV~~GHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~V~i~GEitt~a~vd~~~ivR~~l~~IGY~~~ 81 (393)
++||||||||++||||||||||||||||+||+|||+|||||||++++|+|+|+|||+|+++||+++|||++|++|||+++
T Consensus 9 ~~~lfTSESVseGHPDKicDqISDaILD~~L~qDp~srVA~Et~v~~~~V~v~GEitt~a~vDi~~ivR~~i~~IGY~~~ 88 (398)
T PTZ00104 9 GHFLFTSESVSEGHPDKLCDQISDAVLDACLAQDPLSKVACETCAKTGMVMVFGEITTKAVVDYQKVVRDTVKEIGYDDT 88 (398)
T ss_pred CCEEEEecCCCCCCCcHHHHHHHHHHHHHHHhcCCCCcEEEEEEEeCCEEEEEEEEcCCccCCHHHHHHHHHHHhCCCCc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEEeecCCChhhhcccCCCCCCCCCCCCCCcceeeEeEecCCCCCCCCchHHHHHHHHHHHHHHHHcCCC
Q 016215 82 DVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTC 161 (393)
Q Consensus 82 ~~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~l~~~l~~~Rk~g~~ 161 (393)
++|||+++|.|+++|++|||||+|||+.. ...+++|||||||||||||||||+||||||+|||+|++||+++||+|.+
T Consensus 89 ~~gfd~~t~~v~~~i~~QSpDIa~gV~~~--~~~~~iGAGDQGimfGYA~~ET~~~MPlpi~lAh~L~~~l~~~Rk~~~~ 166 (398)
T PTZ00104 89 EKGLDYKTCNVLVAIEQQSPDIAQGVHVG--KKEEDIGAGDQGIMFGYATDETEELMPLTHELATKLAKRLSELRKNGIL 166 (398)
T ss_pred ccCcCCCceEEEecCCCCChhHhhccccc--cccccCCCCccceeeeeecCCCcccCCcHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999842 1124589999999999999999999999999999999999999999999
Q ss_pred CcccCCcceeEEEEEecCC-CceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhccccCCCCCCCCCcEEEECCCCCeEE
Q 016215 162 SWLRPDGKTQVTVEYYNDN-GAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI 240 (393)
Q Consensus 162 ~~l~pD~KtQVtv~Y~~~~-g~~~p~rv~tiviS~QH~~~v~~~~l~~~i~e~vi~~v~~~~~~~~~t~~~INPtG~Fvi 240 (393)
|||||||||||||+|+++. +.++|+||++||||+||++++++++|+++|+++||+|++|.+|++++|+||||||||||+
T Consensus 167 ~~L~PD~KsQVtv~Y~~~~~~~~~P~~i~tivvS~QH~~~v~~~~l~~~i~~~vi~~v~~~~~~~~~t~~~INPtGrFvi 246 (398)
T PTZ00104 167 PWLRPDAKTQVTVEYEYDTRGGLTPKRVHTILISTQHDEGVSNEEIREDLMEHVIKPVIPAKLLDEETKYHLNPSGRFVI 246 (398)
T ss_pred CeeccCCceEEEEEeccCCCCCccceeEEEEEEccccCCCCCHHHHHHHHHHHHHHHhcCcccCCCCcEEEECCCCCeEe
Confidence 9999999999999996531 115899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccCCceEEEecCCCccccccccCcCCCCCCccchhhHHHHHHHHHHHHhccccccEEEEEEEeccccceeEEE
Q 016215 241 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFV 320 (393)
Q Consensus 241 GGP~~DtGLTGRKiiVDTYGg~a~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~cevQlsYAIG~a~Pvsi~V 320 (393)
|||.||||||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++||||+|
T Consensus 247 GGP~gDtGLTGRKIiVDTYGG~a~HGGGAFSGKDptKVDRSaAY~ARyiAKniVAAGlA~~ceVQlsYAIGva~Pvsi~V 326 (398)
T PTZ00104 247 GGPHGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDPSKVDRSAAYAARWIAKSLVAAGLCKRCLVQVSYAIGVAEPLSIHV 326 (398)
T ss_pred CCCcccccccCceEEEEcCCCccCCCCccccCCCcchhhhHHHHHHHHHHHHHHhhccccceEEEEEEEcccCCCceeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCC--CHHHHHHHHHHhCCCChHhHHhhhccccccccccccccccccCCCCCCCCCccccccCcccCCC
Q 016215 321 DSYGTGKI--PDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 392 (393)
Q Consensus 321 ~tfgt~~~--~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~p~~~iY~~ta~yGHFGr~~~~fpWE~~dk~~~~~~~ 392 (393)
|||||+++ ++++|.++|+++|||||++||++|+|++| +|++||+||||||++++||||++|++++.++-
T Consensus 327 ~TfGT~~~~~~~~~i~~~v~~~Fdl~P~~II~~L~L~~P---iY~~ta~yGHFGr~~~~f~WE~~d~~~~~~~~ 397 (398)
T PTZ00104 327 NTYGTGKKGYDDEDLLEIVQKNFDLRPGDIIKELDLRRP---IFQKTASYGHFGRSDPEFTWEVPKDLEHEKDV 397 (398)
T ss_pred ecCCCcccCCCHHHHHHHHHHHcCCCHHHHHHHhCCCCh---hhhhhhccCccCCCCCCCCccccchhcccccC
Confidence 99999999 99999999999999999999999999999 99999999999999888999999999987653
No 4
>PRK05250 S-adenosylmethionine synthetase; Validated
Probab=100.00 E-value=7.2e-184 Score=1357.04 Aligned_cols=378 Identities=61% Similarity=0.998 Sum_probs=369.0
Q ss_pred cceeeccccCCCCCchhhhhhHHHHHHHHhhcCCCCcEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCCCCC
Q 016215 3 TFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDD 82 (393)
Q Consensus 3 ~~lfTSESV~~GHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~V~i~GEitt~a~vd~~~ivR~~l~~IGY~~~~ 82 (393)
+||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||+|+++||++++||++|++|||++++
T Consensus 2 ~~lfTSESV~eGHPDKicDqISDaILD~~L~~Dp~srVA~Et~v~~~~V~i~GEitt~a~vD~~~ivR~~i~~IGY~~~~ 81 (384)
T PRK05250 2 RYLFTSESVSEGHPDKIADQISDAILDAILAQDPNARVACETLVTTGLVVVAGEITTSAYVDIEEIVRETIKEIGYTSSE 81 (384)
T ss_pred CceEeecCCCCCCCcHHHHHHHHHHHHHHHhhCCCCcEEEEEEeecCeEEEEEEEeCCccCCHHHHHHHHHHHcCCCCcc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEEeecCCChhhhcccCCCCCCCCCCCCCCcceeeEeEecCCCCCCCCchHHHHHHHHHHHHHHHHcCCCC
Q 016215 83 VGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCS 162 (393)
Q Consensus 83 ~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~l~~~l~~~Rk~g~~~ 162 (393)
+|||+++|.|+++|++|||||+|||+.+ ..+++|||||||||||||||||+|||||++|||+|++||+++||+|.+|
T Consensus 82 ~gfd~~~~~v~~~i~~QSpdIa~gV~~~---~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~l~~~l~~~Rk~~~~~ 158 (384)
T PRK05250 82 YGFDANTCAVLVSIGEQSPDIAQGVDRD---ELDEIGAGDQGIMFGYACNETPELMPLPITLAHRLVRRLAEVRKSGTLP 158 (384)
T ss_pred cCcCCCceEEEeecCCCChhHHhhhCcc---ccccCCCCCceeeeeeecCCCcccCChHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999852 2356899999999999999999999999999999999999999999999
Q ss_pred cccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhccccCCCCCCCCCcEEEECCCCCeEEcC
Q 016215 163 WLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGG 242 (393)
Q Consensus 163 ~l~pD~KtQVtv~Y~~~~g~~~p~rv~tiviS~QH~~~v~~~~l~~~i~e~vi~~v~~~~~~~~~t~~~INPtG~FviGG 242 (393)
||||||||||||+|++ + +|+||++||||+||++++++++|+++|+|+||+|++|++|++++|+|||||||+||+||
T Consensus 159 ~l~PD~KtQVtv~Y~~--~--~p~~i~tiviS~QH~~~~~~~~l~~~i~e~vi~~v~~~~~~~~~t~~~INPtG~FviGG 234 (384)
T PRK05250 159 YLRPDAKSQVTVEYEN--G--KPVRIDTIVVSTQHDPDVSQEQLREDVIEEVIKPVLPAELLDEDTKFLINPTGRFVIGG 234 (384)
T ss_pred eecCCCceEEEEEEEC--C--ceeeEEEEEEeccCCCCCCHHHHHHHHHHHHhHHhcccccCCCCeEEEECCCCCeEeCC
Confidence 9999999999999974 5 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCceEEEecCCCccccccccCcCCCCCCccchhhHHHHHHHHHHHHhccccccEEEEEEEeccccceeEEEEe
Q 016215 243 PHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDS 322 (393)
Q Consensus 243 P~~DtGLTGRKiiVDTYGg~a~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~cevQlsYAIG~a~Pvsi~V~t 322 (393)
|.||||||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++||||+|||
T Consensus 235 P~gDtGLTGRKIiVDTYGG~a~hGGGAFSGKDptKVDRSaAY~AR~iAKniVaaglA~~ceVQlsYAIGva~Pvsi~Vdt 314 (384)
T PRK05250 235 PQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLADRCEVQLSYAIGVAEPVSIYVDT 314 (384)
T ss_pred CcccccccCceEEEEcCCcccccCCccccCCCcchhhhHHHHHHHHHHHHHHhhcCCCceEEEEEEeeccccCceEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHhCCCChHhHHhhhccccccccccccccccccCCCCCCCCCccccccCcccC
Q 016215 323 YGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 390 (393)
Q Consensus 323 fgt~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~p~~~iY~~ta~yGHFGr~~~~fpWE~~dk~~~~~ 390 (393)
|||+++++++|.++|+++|||||++||++|+|++| ||++||+||||||++++||||++|+++.+.
T Consensus 315 fGt~~~~~~~i~~~v~~~Fdl~P~~Ii~~L~L~~p---iY~~ta~yGHFGr~~~~fpWE~~d~v~~l~ 379 (384)
T PRK05250 315 FGTGKVSDEKIEEAVREVFDLRPAGIIKMLDLRRP---IYRKTAAYGHFGREDLDFPWEKTDKVEALK 379 (384)
T ss_pred CCCCCCCHHHHHHHHHHHcCCCHHHHHHHhCCCCc---cchhhcccCCCCCCCCCCCCcccchHHHHH
Confidence 99999999999999999999999999999999999 999999999999998899999999988654
No 5
>PRK12459 S-adenosylmethionine synthetase; Provisional
Probab=100.00 E-value=1.2e-183 Score=1356.25 Aligned_cols=379 Identities=58% Similarity=0.952 Sum_probs=366.2
Q ss_pred CCcceeeccccCCCCCchhhhhhHHHHHHHHhhcCCCCcEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCCC
Q 016215 1 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVS 80 (393)
Q Consensus 1 ~~~~lfTSESV~~GHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~V~i~GEitt~a~vd~~~ivR~~l~~IGY~~ 80 (393)
|.+||||||||++||||||||||||||||+||+|||+|||||||++++|+|+|+|||+|+++||+++|||++|++|||+
T Consensus 1 m~~~lfTSESV~eGHPDKicDqISDaILDa~L~qDp~srVA~Et~v~~~~V~v~GEitt~a~vdi~~ivR~~i~~IGY~- 79 (386)
T PRK12459 1 MSTFLFTSESVTEGHPDKLCDQISDAILDACLRQDPASRVACEVLVSTGIVIVAGEITSSAKVDIEKIVRNVIKEIGYD- 79 (386)
T ss_pred CCceeEEecCCCCCCccHHHhhHHHHHHHHHHhhCCCCcEEEEEEeecCeEEEEEEEccCccCCHHHHHHHHHHHhCCC-
Confidence 6679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceEEEEeecCCChhhhcccCCCCC--CCCCCCCCCcceeeEeEecCCCCCCCCchHHHHHHHHHHHHHHHHc
Q 016215 81 DDVGLDADHCKVLVNIEQQSPDIAQGVHGHFT--KRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKN 158 (393)
Q Consensus 81 ~~~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~--~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~l~~~l~~~Rk~ 158 (393)
++|||+++|.|+++|++|||||+|||+.+.+ +..+++|||||||||||||||||+||||||+|||+|++||+++||+
T Consensus 80 -~~gfd~~t~~v~~~i~~QSpdIa~gV~~~~~~~~~~~~iGAGDQGimfGYA~~ET~~~MPlpi~lAh~l~~~l~~~Rk~ 158 (386)
T PRK12459 80 -ELGFDPRTCTVLVSLGEQSPDIAQGVDTAEGRDEELEELGAGDQGTMFGYACDETPELMPLPIVLAHRLAKRLDQARKD 158 (386)
T ss_pred -CCCCCCCceEEEeccccCChhHhcccccccccccccccCCCCcceEeeeeecCCCcccCChHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999999999999974321 1124689999999999999999999999999999999999999999
Q ss_pred CCCCcccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhccccCCCCCCCCCcEEEECCCCCe
Q 016215 159 STCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRF 238 (393)
Q Consensus 159 g~~~~l~pD~KtQVtv~Y~~~~g~~~p~rv~tiviS~QH~~~v~~~~l~~~i~e~vi~~v~~~~~~~~~t~~~INPtG~F 238 (393)
|.++||||||||||||+|++ + +|+||++||||+||++++++++++++|+|+||+|++|++|++++|+|||||||+|
T Consensus 159 g~~~~l~PD~KsQVtv~Y~~--~--~P~rv~tivvS~QH~~~v~~~~~~~~i~e~vi~~v~~~~~~~~~t~~~INPtGrF 234 (386)
T PRK12459 159 GLLPGLLPDGKTQVTVEYED--G--RPVRVDTIVVSAQHDESVDLETLRRDVIENVIKPVFEDFWLDDETRILINPTGRF 234 (386)
T ss_pred CCCCeecCCCceEEEEEeeC--C--ceeEEEEEEEeeccCCCCCHHHHHHHHHHHHHHHhcCcccCCCCcEEEECCCCCe
Confidence 99999999999999999974 5 8999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCcccCCceEEEecCCCccccccccCcCCCCCCccchhhHHHHHHHHHHHHhccccccEEEEEEEeccccceeE
Q 016215 239 VIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSV 318 (393)
Q Consensus 239 viGGP~~DtGLTGRKiiVDTYGg~a~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~cevQlsYAIG~a~Pvsi 318 (393)
|+|||.||||||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++||||
T Consensus 235 viGGP~gD~GLTGRKIiVDTYGG~~~HGGGAFSGKDptKVDRSaAY~AR~iAKniVaAGlA~~ceVQlsYAIGva~Pvsi 314 (386)
T PRK12459 235 VVGGPAADTGLTGRKIMVDTYGGYARHGGGAFSGKDPSKVDRSAAYAARYIAKNIVAAGLAKRCEVQLSYAIGKARPVSV 314 (386)
T ss_pred EeCCCcccccccCceEEEEcCCcccccCCccccCCCcchhhhHHHHHHHHHHHHHHhhcCccceEEEEEEeecccccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHhCCCChHhHHhhhccccccccccccccccccCCCCCCCCCccccccCcccC
Q 016215 319 FVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 390 (393)
Q Consensus 319 ~V~tfgt~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~p~~~iY~~ta~yGHFGr~~~~fpWE~~dk~~~~~ 390 (393)
+||||||+++++++|.++|+++|||||++||++|+|++| +|++||+||||||+ +||||++|+++.+.
T Consensus 315 ~V~TfGT~~~~~~~i~~~i~~~Fdl~P~~Ii~~L~L~~p---iY~~ta~yGHFGr~--~f~WE~~d~~~~l~ 381 (386)
T PRK12459 315 QVNTFGTGTVSDEELTRAVREHFDLRPAGIIEKLNLRNP---IYRKTAAYGHFGRT--LFPWEKTDKAALLR 381 (386)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHcCCCHHHHHHHcCCCCc---hhhhhcccCCCCCC--CCCcccccHHHHHH
Confidence 999999999999999999999999999999999999999 99999999999997 59999999987664
No 6
>TIGR01034 metK S-adenosylmethionine synthetase. Tandem isozymes of this S-adenosylmethionine synthetase in E. coli are designated MetK and MetX.
Probab=100.00 E-value=2.8e-183 Score=1349.06 Aligned_cols=374 Identities=60% Similarity=1.001 Sum_probs=364.9
Q ss_pred eeeccccCCCCCchhhhhhHHHHHHHHhhcCCCCcEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCCCCCCC
Q 016215 5 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVG 84 (393)
Q Consensus 5 lfTSESV~~GHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~V~i~GEitt~a~vd~~~ivR~~l~~IGY~~~~~g 84 (393)
|||||||++||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++||+++|||++|++|||+++++|
T Consensus 1 lfTSESV~eGHPDKicDqISDaILD~~L~~Dp~srVA~Et~v~~~~V~i~GEitt~~~vd~~~ivR~~i~~IGY~~~~~g 80 (377)
T TIGR01034 1 LFTSESVSEGHPDKIADQISDAVLDAILKQDPKAKVACETFVKTGLVLIGGEITTSAYVDIQEVARNTIKDIGYTDSDYG 80 (377)
T ss_pred CCccCcCCCCCCcHHHHHHHHHHHHHHHhhCCCCcEEEEEEeecCeEEEEEEEcCCccCCHHHHHHHHHHHhCCCCcccC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEeecCCChhhhcccCCCCCCCCCCCCCCcceeeEeEecCCCCCCCCchHHHHHHHHHHHHHHHHcCCCCcc
Q 016215 85 LDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWL 164 (393)
Q Consensus 85 fd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~l~~~l~~~Rk~g~~~~l 164 (393)
||+++|.|+++|++|||||+|||+++. .+++|||||||||||||||||+|||||++|||+|++||+++||+|.+|||
T Consensus 81 fd~~t~~v~~~i~~QSpDIa~gV~~~~---~~~iGAGDQGimfGYA~~ET~e~MPl~i~lAh~l~~~l~~~Rk~g~~~~l 157 (377)
T TIGR01034 81 FDAKTCAVLVAIGNQSPDIAQGVDKAN---PEEQGAGDQGIMFGYATNETPELMPLPITLAHKLLKRAAELRKSGTLPWL 157 (377)
T ss_pred CCCCceEEEecCCCCChHHHhccccCc---cccCCCCcceeeeeeecCCCcccCChHHHHHHHHHHHHHHHHhcCCCCee
Confidence 999999999999999999999998531 23589999999999999999999999999999999999999999999999
Q ss_pred cCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhccccCCCCCCCCCcEEEECCCCCeEEcCCC
Q 016215 165 RPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPH 244 (393)
Q Consensus 165 ~pD~KtQVtv~Y~~~~g~~~p~rv~tiviS~QH~~~v~~~~l~~~i~e~vi~~v~~~~~~~~~t~~~INPtG~FviGGP~ 244 (393)
||||||||||+|++ + +|+||++||||+||++++++++++++|+|+||+|++|++|++++|+||||||||||+|||.
T Consensus 158 ~PD~KtQVtveY~~--~--~P~rv~tivvS~QH~~~v~~~~l~~~i~~~vi~~v~~~~~~~~~t~~~INPtGrFviGGP~ 233 (377)
T TIGR01034 158 RPDGKSQVTVQYED--N--KPVRVDTIVLSTQHDPDISQKDLREAIIEEIIKPVLPAEYLDEKTKFFINPTGRFVIGGPM 233 (377)
T ss_pred cCCCceEEEEEEEC--C--ceeEEEEEEEecCCCCCCCHHHHHHHHHHHHhHHhcCcccCCCCcEEEECCCCCeEeCCCc
Confidence 99999999999964 5 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCceEEEecCCCccccccccCcCCCCCCccchhhHHHHHHHHHHHHhccccccEEEEEEEeccccceeEEEEecC
Q 016215 245 GDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYG 324 (393)
Q Consensus 245 ~DtGLTGRKiiVDTYGg~a~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~cevQlsYAIG~a~Pvsi~V~tfg 324 (393)
||||||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++||||+|||||
T Consensus 234 gDtGLTGRKIiVDTYGG~~~hGGGAFSGKDptKVDRSaAY~AR~iAKniVaAgla~~c~VQlsYaIGva~Pvsi~V~tfG 313 (377)
T TIGR01034 234 GDTGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAARYIAKNIVAAGLADRCEVQLSYAIGVAEPVSIMIETFG 313 (377)
T ss_pred cccccccceEEEeccCcccccCCccccCCCcchhhhHHHHHHHHHHHHHHhhcCcceeEEEEEEEcCcCCCceEEEEcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhCCCChHhHHhhhccccccccccccccccccCCCCCCCCCccccccCcccC
Q 016215 325 TGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 390 (393)
Q Consensus 325 t~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~p~~~iY~~ta~yGHFGr~~~~fpWE~~dk~~~~~ 390 (393)
|+++++++|.++|+++|||||++||++|+|++| +|++||+||||||+ +||||++|+++.++
T Consensus 314 T~~~~~~~i~~~v~~~FdlrP~~Ii~~L~L~~p---iY~~ta~yGHFGr~--~~~WE~~d~~~~l~ 374 (377)
T TIGR01034 314 TSKKSEEELLNVVKENFDLRPGGIIEKLDLLKP---IYRKTAVYGHFGRE--EFPWEKPDKLEELK 374 (377)
T ss_pred CccCCHHHHHHHHHHhcCCCHHHHHHHhCCCCc---hhhhhcccCCCCCC--CCCccccchHHHHH
Confidence 999999999999999999999999999999999 99999999999997 59999999988764
No 7
>KOG1506 consensus S-adenosylmethionine synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=2.3e-174 Score=1246.58 Aligned_cols=380 Identities=74% Similarity=1.163 Sum_probs=373.2
Q ss_pred CcceeeccccCCCCCchhhhhhHHHHHHHHhhcCCCCcEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCCCC
Q 016215 2 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSD 81 (393)
Q Consensus 2 ~~~lfTSESV~~GHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~V~i~GEitt~a~vd~~~ivR~~l~~IGY~~~ 81 (393)
.+||||||||+||||||||||||||||||||+|||+|+|||||..++|||++.|||||+|.|||+++||++++.|||+++
T Consensus 4 ~tFLFTSESVgEGHPDKmCDQISDAiLDAhLkqDP~aKVACETv~KTgMiml~GEITska~vDYqkvVR~tik~IGydds 83 (383)
T KOG1506|consen 4 ETFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVACETVTKTGMIMLCGEITSKAVVDYQKVVRDTIKKIGYDDS 83 (383)
T ss_pred ceeEEeeccccCCCchHHHHHHHHHHHHHHhhcCCCceeeeeeccccceEEEeeeccchhhhhHHHHHHHHHHHhCCccc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEEeecCCChhhhcccCCCCCCCCCCCCCCcceeeEeEecCCCCCCCCchHHHHHHHHHHHHHHHHcCCC
Q 016215 82 DVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTC 161 (393)
Q Consensus 82 ~~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~l~~~l~~~Rk~g~~ 161 (393)
..|||++||+|+++|.+|||||||||+- ++..+++||||||+|||||||||||+|||++.|||+|..+|+++|++|++
T Consensus 84 skGfD~ktcnvLvaieQQSPdIAqgvH~--~k~~edvGAGDQgimfGYATdet~e~mplt~~lahkln~~l~~~rr~g~l 161 (383)
T KOG1506|consen 84 SKGFDYKTCNVLVAIEQQSPDIAQGVHV--DKDEEDVGAGDQGIMFGYATDETPECMPLTIVLAHKLNAKLAELRRNGTL 161 (383)
T ss_pred ccCccccccceeeeecccCchhhhcccc--cCCHhHcCCCcceeEeeeecCCCccccchHHHHHHHHHHHHHhhcccCcc
Confidence 9999999999999999999999999984 45567899999999999999999999999999999999999999999999
Q ss_pred CcccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhccccCCCCCCCCCcEEEECCCCCeEEc
Q 016215 162 SWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIG 241 (393)
Q Consensus 162 ~~l~pD~KtQVtv~Y~~~~g~~~p~rv~tiviS~QH~~~v~~~~l~~~i~e~vi~~v~~~~~~~~~t~~~INPtG~FviG 241 (393)
||||||+|+|||++|.+++|++.|.||||||||+||+++|++++||++++|+||++|+|++++|++|.|||||+||||||
T Consensus 162 ~WlRpdsktqVTvey~~~~Ga~vP~rVhtvviS~QH~~~is~~~lr~~l~e~vik~viPa~~lDe~Tiyhl~PsGrFviG 241 (383)
T KOG1506|consen 162 PWLRPDSKTQVTVEYMNDNGAMVPLRVHTVVISTQHSEDITLDDLRAELKEKVIKPVIPAKYLDEKTIYHLNPSGRFVIG 241 (383)
T ss_pred cccccCCcceEEEEEecCCCceeeeEEEEEEEecccCccccHHHHHHHHHHhhhhhcCcHhhcCccceEEecCCccEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccCCceEEEecCCCccccccccCcCCCCCCccchhhHHHHHHHHHHHHhccccccEEEEEEEeccccceeEEEE
Q 016215 242 GPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVD 321 (393)
Q Consensus 242 GP~~DtGLTGRKiiVDTYGg~a~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~cevQlsYAIG~a~Pvsi~V~ 321 (393)
||+||+|||||||||||||||+.||||||||||||||||||||+|||+||++|+||||+||+||+|||||+++|+||+|+
T Consensus 242 GP~GDAGlTGRKIIvDtYGGwgahGGGAFSGKD~tKVDRSaAYaaRwvAkSlV~aGl~rR~lVQvSYAIGvaePlSv~v~ 321 (383)
T KOG1506|consen 242 GPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDPTKVDRSAAYAARWVAKSLVAAGLCRRCLVQVSYAIGVAEPLSVFVF 321 (383)
T ss_pred CCCcccccccceEEEeccCcccccCCcccCCCCccccchHHHHHHHHHHHHHHHhhhhhheeeEEeeeecCCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHhCCCChHhHHhhhccccccccccccccccccCCCCCCCCCccccccCcc
Q 016215 322 SYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW 388 (393)
Q Consensus 322 tfgt~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~p~~~iY~~ta~yGHFGr~~~~fpWE~~dk~~~ 388 (393)
||||+..++++|.++|+++|||||+.|+++|+|++| ||.+||+|||||+. +||||++.+|.+
T Consensus 322 ~ygTs~~s~~ell~iv~~nFDlrPG~ivk~LdLkrp---iy~~Ta~yGHFg~~--~f~WE~pk~Lk~ 383 (383)
T KOG1506|consen 322 TYGTSTKSDKELLEIVKKNFDLRPGMIVKNLDLKRP---IYLKTAAYGHFGDQ--EFPWEVPKPLKI 383 (383)
T ss_pred eccCCCCCHHHHHHHHHhccCCCCceEEeecccccc---cccccccccccCCC--CCCccccccCCC
Confidence 999999999999999999999999999999999999 99999999999985 599999998864
No 8
>PF02773 S-AdoMet_synt_C: S-adenosylmethionine synthetase, C-terminal domain; InterPro: IPR022630 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. This entry represents the C-terminal domain of S=adenosylmethionine synthetase and is found in association with PF00438 from PFAM and PF02772 from PFAM. S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP []. AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis. In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family. The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance []; GO: 0004478 methionine adenosyltransferase activity; PDB: 3IML_B 1QM4_B 1O9T_B 1O93_A 1O92_B 1O90_A 1FUG_A 1RG9_D 1XRA_A 1P7L_C ....
Probab=100.00 E-value=4e-83 Score=561.56 Aligned_cols=138 Identities=70% Similarity=1.235 Sum_probs=121.9
Q ss_pred EcCCCCCcccCCceEEEecCCCccccccccCcCCCCCCccchhhHHHHHHHHHHHHhccccccEEEEEEEeccccceeEE
Q 016215 240 IGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVF 319 (393)
Q Consensus 240 iGGP~~DtGLTGRKiiVDTYGg~a~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~cevQlsYAIG~a~Pvsi~ 319 (393)
||||.||||||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+||+
T Consensus 1 iGGp~~D~GlTGRKiivDtYGg~~~hGGGafSGKD~tKvDRsaaY~aR~iAKniVaagla~~c~vqlsYaIGv~~P~si~ 80 (138)
T PF02773_consen 1 IGGPQGDTGLTGRKIIVDTYGGWARHGGGAFSGKDPTKVDRSAAYMARYIAKNIVAAGLAKRCEVQLSYAIGVAEPVSIY 80 (138)
T ss_dssp S-TTTTSEEETTSSTTTTTTTTSSB-BS---TTB-TTSHHHHHHHHHHHHHHHHHHTTSBSEEEEEEEE-TT-SS-SEEE
T ss_pred CCCCccccccccceEEEecccCceecCCccccCCChhhhhccHHHHHHHHHHHHHHccchHHHHhhceeeeccccCcccE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHhCCCChHhHHhhhccccccccccccccccccCCCCCCCCCccc
Q 016215 320 VDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEV 382 (393)
Q Consensus 320 V~tfgt~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~p~~~iY~~ta~yGHFGr~~~~fpWE~ 382 (393)
||||||+++++++|.++|+++|||||++||++|+|++| ||++||+||||||++ |||||
T Consensus 81 v~tfgT~~~~d~~i~~~I~~~Fdl~P~~II~~L~L~~P---iY~~TA~yGHFGr~~--~~WE~ 138 (138)
T PF02773_consen 81 VDTFGTGKISDEEILEIIKENFDLRPAGIIKELDLRRP---IYRKTAAYGHFGRED--FPWEK 138 (138)
T ss_dssp EEETT-BSS-HHHHHHHHHHHS--SHHHHHHHCTTTSS---THGGGGSS-SSSSTT--SGGG-
T ss_pred EEeCCCccchHHHHHHHHHHHhCCcHHHHHHHhCcCCc---hhHhhhCcCCCCCCC--CCCCC
Confidence 99999999999999999999999999999999999999 999999999999976 99997
No 9
>PF02772 S-AdoMet_synt_M: S-adenosylmethionine synthetase, central domain; InterPro: IPR022629 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. This entry represents the central domain and is found in association with PF00438 from PFAM and PF02773 from PFAM. S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP []. AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis. In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family. The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance []; GO: 0004478 methionine adenosyltransferase activity; PDB: 3S82_B 2OBV_A 3RV2_A 1FUG_A 1RG9_D 1XRA_A 1P7L_C 1XRB_A 1MXA_A 1MXB_A ....
Probab=100.00 E-value=4.4e-56 Score=384.73 Aligned_cols=119 Identities=64% Similarity=1.034 Sum_probs=107.9
Q ss_pred CCCCCcceeeEeEecCCCCCCCCchHHHHHHHHHHHHHHHHcCCCCcccCCcceeEEEEEecCCCceeeeEEeEEEEeee
Q 016215 117 DIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQ 196 (393)
Q Consensus 117 ~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~l~~~l~~~Rk~g~~~~l~pD~KtQVtv~Y~~~~g~~~p~rv~tiviS~Q 196 (393)
++|||||||||||||||||+||||||+|||+|++||+++|++|.++||||||||||||+|+++ + +|+||++||||+|
T Consensus 2 ~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~R~~~~~~~l~PD~KsQVtveY~~~-~--~P~ri~tivvS~Q 78 (120)
T PF02772_consen 2 EIGAGDQGIMFGYACDETPELMPLPIVLAHRLARRLAEVRKNGELPWLRPDGKSQVTVEYDEN-G--KPVRIDTIVVSTQ 78 (120)
T ss_dssp CCSBSS-EEEEEEEETTSTTSS-HHHHHHHHHHHHHHHHHHTSSSTTEEEEEEEEEEEEEEET-T--EEEEEEEEEEEEE
T ss_pred CcCcCcceEEEeeEcCCCCccCChHHHHHHHHHHHHHHHHhcccCcccCCCcceeEEEeeccC-C--ceeeeeEEEEEec
Confidence 689999999999999999999999999999999999999999999999999999999999654 5 9999999999999
Q ss_pred cCCCCChHHHHHHHHHhhccccCCCCCCCCCcEEEECCCCCe
Q 016215 197 HDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRF 238 (393)
Q Consensus 197 H~~~v~~~~l~~~i~e~vi~~v~~~~~~~~~t~~~INPtG~F 238 (393)
|+++++++++|++|+|+||+||+++++++++|+|||||||||
T Consensus 79 H~~~i~~~~ir~~i~e~Vi~~v~~~~~~~~~t~~~INPtGrF 120 (120)
T PF02772_consen 79 HDEDISLEEIREDIKEKVIKPVIPEYLLDEDTKILINPTGRF 120 (120)
T ss_dssp E-TTS-HHHHHHHHHHHTHHHHSHGGG-BTT-EEEESTTS--
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcccccCCCCcEEEECCCCCC
Confidence 999999999999999999999999999999999999999998
No 10
>PF00438 S-AdoMet_synt_N: S-adenosylmethionine synthetase, N-terminal domain; InterPro: IPR022628 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. This entry represents the N-terminal domain of S-adenosylmethionine synthetase and is found in association with PF02772 from PFAM and PF02773 from PFAM. S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP []. AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis. In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family. The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance []; GO: 0004478 methionine adenosyltransferase activity; PDB: 3RV2_A 3TDE_B 3S82_B 3IML_B 2P02_A 2OBV_A 1QM4_B 1O9T_B 1O93_A 1O92_B ....
Probab=100.00 E-value=1.5e-48 Score=328.54 Aligned_cols=100 Identities=61% Similarity=1.034 Sum_probs=93.1
Q ss_pred CcceeeccccCCCCCchhhhhhHHHHHHHHhhcCCCCcEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCCCC
Q 016215 2 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSD 81 (393)
Q Consensus 2 ~~~lfTSESV~~GHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~V~i~GEitt~a~vd~~~ivR~~l~~IGY~~~ 81 (393)
++||||||||++||||||||||||||||+||++||+|||||||++++|+|+|+|||++++++|+++|||++|++|||+++
T Consensus 1 ~~~lfTSESV~~GHPDKicDqISDailD~~l~~dp~arVA~E~~~~~~~v~i~GEi~~~~~vd~~~ivR~~i~~IGY~~~ 80 (100)
T PF00438_consen 1 KKYLFTSESVSEGHPDKICDQISDAILDACLKQDPNARVACETLVSTGMVIIAGEITSRAYVDIEKIVREVIKDIGYDDS 80 (100)
T ss_dssp -EEEEEEEEE-TTSHHHHHHHHHHHHHHHHHHH-TT-EEEEEEEEETTEEEEEEEEESSHHHTHHHHHHHHHHHHT-EEG
T ss_pred CceEEeeccccCCCchhhhceeeeccchHHHhcCCCCeEEEEEEeeccEEEEEEEeccchhhhHHHHHHHHHHHhCCCCc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEEeecCCCh
Q 016215 82 DVGLDADHCKVLVNIEQQSP 101 (393)
Q Consensus 82 ~~gfd~~~~~v~~~i~~QS~ 101 (393)
++|||+++|+|+++|++|||
T Consensus 81 ~~gfd~~tc~V~~~i~~QSp 100 (100)
T PF00438_consen 81 EYGFDYDTCEVLVAIHEQSP 100 (100)
T ss_dssp GGTEETTTSEEEEEEEEE-H
T ss_pred cCCCCCCcceEEEeecccCc
Confidence 99999999999999999998
No 11
>PF01941 AdoMet_Synthase: S-adenosylmethionine synthetase (AdoMet synthetase); InterPro: IPR002795 A highly diverged class of S-adenosylmethionine synthetases have been identified in the archaea. S-adenosylmethionine is the primary alkylating agent in all known organisms. ATP:L-methionine S-adenosyltransferase (MAT) catalyses the only known biosynthetic route to this central metabolite. Although the amino acid sequence of MAT is strongly conserved among bacteria and eukarya (see IPR002133 from INTERPRO) no homologues had been recognised in the completed genome sequences of any archaea. The identification of a second major class of MAT emphasises the long evolutionary history of the archaeal lineage and the structural diversity found even in crucial metabolic enzymes []. Three bacterial genomes encode both the archaeal and eukaryotic/bacterial types of MAT [].; GO: 0004478 methionine adenosyltransferase activity, 0005524 ATP binding, 0006730 one-carbon metabolic process
Probab=98.89 E-value=2.8e-07 Score=94.18 Aligned_cols=304 Identities=23% Similarity=0.280 Sum_probs=187.7
Q ss_pred cCCCCCchhhhhhHHHHHHHH----hhc---------CCCCcEEEEEEee--------eCeEEEEEEeeeee---eccHH
Q 016215 11 VNEGHPDKLCDQISDAVLDAC----LEQ---------DPESKVACETCTK--------TNMVMVFGEITTKA---KVDYE 66 (393)
Q Consensus 11 V~~GHPDKicDqISDaILDa~----L~~---------Dp~arVA~E~~v~--------~~~V~i~GEitt~a---~vd~~ 66 (393)
=+-||||-|||-||+++=-++ |++ |+---||-++.-+ .=.|+++|..|+.. .++++
T Consensus 25 KGiGHPDtIcD~iaE~vS~~Ls~~Yl~~fG~ILHHN~DK~llvgG~s~p~fGGG~vi~Pi~ii~~GRAt~~~~~~~iPv~ 104 (396)
T PF01941_consen 25 KGIGHPDTICDGIAEAVSRALSRYYLERFGAILHHNTDKVLLVGGRSEPKFGGGEVIEPIYIILGGRATKEVGGEKIPVD 104 (396)
T ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHHhCCeeccccccceEEccEEeccCCCceeeeeEEEEEecceeeccCCeeccHH
Confidence 367999999999999875443 222 5655566655433 23578899988764 78888
Q ss_pred HHHHHHHHhhCCCC-CCCCCCCC-ceEEEEeecCCChhhhcccCCCCCCCCCCCCCCcceeeEeEecCCCCCCCCchHHH
Q 016215 67 KIVRDTCRSIGFVS-DDVGLDAD-HCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVL 144 (393)
Q Consensus 67 ~ivR~~l~~IGY~~-~~~gfd~~-~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~l 144 (393)
+|+.++.|+ |=. .--.+|.+ ...|...+.+-|+|+..-..+.. .-.+|-|-.+..||| ||+ -
T Consensus 105 ~Ia~~aak~--~l~~~l~~lD~e~hv~i~~~i~~GS~dL~dvf~r~~----~vp~ANDTS~gVGyA--------PlS--~ 168 (396)
T PF01941_consen 105 EIAIEAAKE--WLRENLRFLDPERHVIIDCRIGPGSPDLVDVFERGK----KVPLANDTSFGVGYA--------PLS--E 168 (396)
T ss_pred HHHHHHHHH--HHHHhcccCCccccEEEEEeeCCCChHHHHHhcccc----cccccCCccceeccC--------Ccc--H
Confidence 887666555 222 12235655 36788889999999987766421 135899999999996 443 3
Q ss_pred HHHHHHHHHHHHHc----CCCCcccCCcceeEEEEEecCCCceeeeEEe--EEEEeeecCCCCCh-HHHHHHHHHhhccc
Q 016215 145 ATKLGARLTEVRKN----STCSWLRPDGKTQVTVEYYNDNGAMVPVRVH--TVLISTQHDETVTN-DEIAADLKEHVIKP 217 (393)
Q Consensus 145 Ah~l~~~l~~~Rk~----g~~~~l~pD~KtQVtv~Y~~~~g~~~p~rv~--tiviS~QH~~~v~~-~~l~~~i~e~vi~~ 217 (393)
.-+|+..+++.-.+ ..+|+.+.|-|.-. +++. . -+.+. .-.|+ .|-.+.+. -+.++.+++.+-.
T Consensus 169 ~E~~Vl~~Er~lns~~fk~~~p~~GeDiKVMG---~R~g-~---~i~LTvA~a~v~-r~v~~~~~Y~~~k~~v~~~v~~- 239 (396)
T PF01941_consen 169 TEKLVLETERYLNSPEFKKKFPEVGEDIKVMG---LREG-D---KITLTVAMAFVD-RYVSSLDEYFERKEEVKEEVED- 239 (396)
T ss_pred HHHHHHHHHHHhccccccccCCCcCCCeEEEE---EEeC-C---EEEEEEEhhhhh-hhcCCHHHHHHHHHHHHHHHHH-
Confidence 44455555443322 35899999999753 3322 2 12211 11111 22232221 2344455544433
Q ss_pred cCCCCCCCCCcEEEECCCCCeEEcCC----------CCCcccCCceEEEecC-CCccccccccCcCCCC-CCccchhhHH
Q 016215 218 VIPEKYLDEKTIFHLNPSGRFVIGGP----------HGDAGLTGRKIIIDTY-GGWGAHGGGAFSGKDP-TKVDRSGAYI 285 (393)
Q Consensus 218 v~~~~~~~~~t~~~INPtG~FviGGP----------~~DtGLTGRKiiVDTY-Gg~a~HGGGAfSGKDp-tKVDRSaAY~ 285 (393)
.+.. +.+.+..++||+.-.--.||+ +||.|.+||=.=|--- =++-|-+==|-+||.| +-|=.-=..+
T Consensus 240 ~a~~-~~~~~v~v~iNt~D~~~~~~~YLTvtGTSAE~GDdG~VGRGNRvNGLITp~RPMSmEAaAGKNPv~HVGKIYNvl 318 (396)
T PF01941_consen 240 YAAK-YTDRDVEVHINTADDPEEGGVYLTVTGTSAEMGDDGSVGRGNRVNGLITPNRPMSMEAAAGKNPVNHVGKIYNVL 318 (396)
T ss_pred HHHH-hcCCceEEEEECCCCCCCCcEEEEeceeeccccCCcccCcccccccccCCCCCCcccccCCCCCcchhhHHHHHH
Confidence 2222 235667899998764333332 6899999995433211 1233455668899998 3455566788
Q ss_pred HHHHHHHHHHh-ccccccEEEEEEEeccc--cceeEEEEecCCCCCCH----HHHHHHHHHh
Q 016215 286 VRQAAKSIVAN-GLARRCIVQVSYAIGVP--EPLSVFVDSYGTGKIPD----KEILKIVKES 340 (393)
Q Consensus 286 AR~iAKniVaa-GlA~~cevQlsYAIG~a--~Pvsi~V~tfgt~~~~~----~~i~~~v~~~ 340 (393)
|..+|+.|++. .=.++|.|.|-=-||.| +|..+.|.......+.- +++++++.+.
T Consensus 319 A~~iA~~I~~~v~gv~ev~V~llSqIG~PId~P~~~~v~i~~~~~~~~~~~~~~v~~Ii~~~ 380 (396)
T PF01941_consen 319 ANEIAQRIYEEVDGVEEVYVRLLSQIGKPIDEPQIASVQIIPEDGVLLEDVEKEVEEIIDEE 380 (396)
T ss_pred HHHHHHHHHHhcCCcceEEEEEccccCCCCCCCeEEEEEEecCCCCchHHHHHHHHHHHHHH
Confidence 99999999984 23568999988889976 89888888766544333 3455555443
No 12
>PRK04439 S-adenosylmethionine synthetase; Provisional
Probab=98.89 E-value=2.6e-07 Score=94.49 Aligned_cols=303 Identities=23% Similarity=0.307 Sum_probs=184.9
Q ss_pred CCCCCchhhhhhHHHHHHHH----hhc---------CCCCcEEEEEEee--eC------eEEEEEEeeeee---eccHHH
Q 016215 12 NEGHPDKLCDQISDAVLDAC----LEQ---------DPESKVACETCTK--TN------MVMVFGEITTKA---KVDYEK 67 (393)
Q Consensus 12 ~~GHPDKicDqISDaILDa~----L~~---------Dp~arVA~E~~v~--~~------~V~i~GEitt~a---~vd~~~ 67 (393)
+-||||-|||-|++++=-++ |++ |+---||-+...+ .| .++++|..|+.. .+++++
T Consensus 26 GiGHPDticD~iaE~~S~~Ls~~Yl~~fG~ILHHN~DK~llvgG~s~p~fGGG~vi~Pi~ii~~GRAt~~~~g~~iPv~~ 105 (399)
T PRK04439 26 GIGHPDTICDGIAEAVSRALSRYYLEKFGAILHHNTDKVLLVGGRSAPKFGGGEVIEPIYIILGGRATKEVGGEEIPVGE 105 (399)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHhCCeeccccchheEEccEEeccCCCceEEeeEEEEEecceeeeECCeEecHHH
Confidence 67999999999999875443 332 6666666665433 22 357889888764 488888
Q ss_pred HHHHHHHhhCCCC-CCCCCCCCc-eEEEEeecCCChhhhcccCCCCCCCCCCCCCCcceeeEeEecCCCCCCCCchHHHH
Q 016215 68 IVRDTCRSIGFVS-DDVGLDADH-CKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLA 145 (393)
Q Consensus 68 ivR~~l~~IGY~~-~~~gfd~~~-~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lA 145 (393)
|+.++.|+ |=. .--.+|.+. ..|...+.+-|+|+..-..+. . .-.+|-|-....||| ||+- -
T Consensus 106 Ia~~Aak~--~L~~~l~~lD~e~hv~i~~~i~~GS~dL~~vF~r~--~--~vp~ANDTS~gVGyA--------PlS~--~ 169 (399)
T PRK04439 106 IAIEAAKE--YLRENLRNLDPERHVIIDVRLGPGSTDLVDVFERE--S--IVPLANDTSFGVGYA--------PLSE--T 169 (399)
T ss_pred HHHHHHHH--HHHHhCccCCccccEEEEEeeCCCcHHHHHHhCCC--C--CccccccccceeecC--------CCCH--H
Confidence 87665554 111 112345544 567888899999998655431 1 134899999999996 4432 3
Q ss_pred HHHHHHHHHHHHc----CCCCcccCCcceeEEEEEecCCCceeeeEEeEEEEe----eecCCCCCh-HHHHHHHHHhhcc
Q 016215 146 TKLGARLTEVRKN----STCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLIS----TQHDETVTN-DEIAADLKEHVIK 216 (393)
Q Consensus 146 h~l~~~l~~~Rk~----g~~~~l~pD~KtQVtv~Y~~~~g~~~p~rv~tiviS----~QH~~~v~~-~~l~~~i~e~vi~ 216 (393)
.+|+..++..=.+ ..+|+.+.|-|.-- +++. . -+. +.|. ..|-.+++. -+.++.+++.|-.
T Consensus 170 E~~Vl~~E~~lns~~~k~~~P~~GeDiKVMG---~R~g-~---~i~---lTVa~a~v~r~v~~~~~Y~~~k~~v~~~v~~ 239 (399)
T PRK04439 170 ERLVLETERYLNSEEFKKRFPEVGEDIKVMG---LRNG-D---EIT---LTIAMALVDRYVNDVDEYFEVKEEVKEKVED 239 (399)
T ss_pred HHHHHHHHHHhcCcchhhcCCCcCCCeEEEE---EEcC-C---EEE---EEEEhHHhhhhcCCHHHHHHHHHHHHHHHHH
Confidence 4444444444322 46899999999752 3332 2 122 2222 133333321 2445555555443
Q ss_pred ccCCCCCCCCCcEEEECCCCCe-------EEcC---CCCCcccCCceEEEecC-CCccccccccCcCCCC-CCccchhhH
Q 016215 217 PVIPEKYLDEKTIFHLNPSGRF-------VIGG---PHGDAGLTGRKIIIDTY-GGWGAHGGGAFSGKDP-TKVDRSGAY 284 (393)
Q Consensus 217 ~v~~~~~~~~~t~~~INPtG~F-------viGG---P~~DtGLTGRKiiVDTY-Gg~a~HGGGAfSGKDp-tKVDRSaAY 284 (393)
-+ +++.+.+..++||..-.- ++=| =+||.|.+||=.=|--- =++-|-+==|-+||.| +-|=.-=..
T Consensus 240 ~a--~~~~~~~v~v~iNt~D~~~~~~~YLTVtGTSAE~GDdG~VGRGNRvNGLITp~RPMSmEAaAGKNPv~HVGKIYNv 317 (399)
T PRK04439 240 LA--QKYTDRDVEVHINTADDPDEGGVYLTVTGTSAEMGDDGSVGRGNRVNGLITPNRPMSMEAAAGKNPVNHVGKIYNV 317 (399)
T ss_pred HH--HhhCCCceEEEEeCCCCCCCCcEEEEeceeehhccCCcccCcCcccCcccCCCCCccccccCCCCCcccchHHHHH
Confidence 22 344555778999986642 2222 26899999995433211 1223444457899998 345555677
Q ss_pred HHHHHHHHHHHh-ccccccEEEEEEEeccc--cceeEEEEecCCCCCCHH----HHHHHHHHhCC
Q 016215 285 IVRQAAKSIVAN-GLARRCIVQVSYAIGVP--EPLSVFVDSYGTGKIPDK----EILKIVKESFD 342 (393)
Q Consensus 285 ~AR~iAKniVaa-GlA~~cevQlsYAIG~a--~Pvsi~V~tfgt~~~~~~----~i~~~v~~~Fd 342 (393)
+|..+|+.|+++ .=.++|.|.|---||.| +|..+.+...-.....-+ ++++++.+.++
T Consensus 318 lA~~iA~~i~~~v~gv~ev~V~llSqIG~PId~P~~a~v~v~~~~g~~~~~~~~~v~~I~~~~L~ 382 (399)
T PRK04439 318 LANRIAREIYEEVEGVKEVYVRLLSQIGKPIDEPLVASIQVIPEDGVLISDVEKEVEEIVDEELA 382 (399)
T ss_pred HHHHHHHHHHHhcCCceEEEEEEeccCCCcCCCCeEEEEEEecCCCCChHHHHHHHHHHHHHHHh
Confidence 899999999984 22679999999899987 798888877633323333 34455544433
No 13
>COG1812 MetK Archaeal S-adenosylmethionine synthetase [Amino acid transport and metabolism]
Probab=98.08 E-value=0.00025 Score=72.17 Aligned_cols=289 Identities=22% Similarity=0.268 Sum_probs=164.7
Q ss_pred cCCCCCchhhhhhHHHHHHHHhhc--CCCC-----------cEEEEE--------EeeeCeEEEEEEeeee---eeccHH
Q 016215 11 VNEGHPDKLCDQISDAVLDACLEQ--DPES-----------KVACET--------CTKTNMVMVFGEITTK---AKVDYE 66 (393)
Q Consensus 11 V~~GHPDKicDqISDaILDa~L~~--Dp~a-----------rVA~E~--------~v~~~~V~i~GEitt~---a~vd~~ 66 (393)
=+-||||-|||-||.+|=-++-+. +... -|+-+. ++..=.+++.|.-|.. ..+++.
T Consensus 25 KGlGHPDsiaDgiAE~vsr~Ls~~YlerfG~IlHHN~Dk~~ivgG~s~p~FGGGevi~PIyIll~GRAt~~~~g~~ip~~ 104 (400)
T COG1812 25 KGLGHPDSIADGIAEAVSRALSKYYLERFGVILHHNTDKVQIVGGQSAPKFGGGEVIEPIYILLSGRATKEVEGVEIPVG 104 (400)
T ss_pred cCCCCChhHHHHHHHHHHHHHHHHHHHHhCceeccccceeEEEcccccccCCCcceeeeEEEEEecceeeeecCeeccch
Confidence 367999999999998875543221 2222 122111 1222235667766543 346777
Q ss_pred HHHHHHHHhhCCCCC-CCCCCCCce-EEEEeecCCChhhhcccCCCCCCCCCCCCCCcceeeEeEecCCCCCCCCchHHH
Q 016215 67 KIVRDTCRSIGFVSD-DVGLDADHC-KVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVL 144 (393)
Q Consensus 67 ~ivR~~l~~IGY~~~-~~gfd~~~~-~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~l 144 (393)
.|+-++.++ |-.. ---+|.+++ .+...|.+-|.|+..--.+..+ +--.|-|-..+.||| ||+.
T Consensus 105 ~ia~~AAk~--yLr~~~r~LD~E~~Viid~rig~GS~dL~dvf~~~~~---~VplANDTSfgVG~A--------PLs~-- 169 (400)
T COG1812 105 SIAIKAAKE--YLRENLRNLDVENHVIIDVRIGQGSVDLVDVFERAKE---EVPLANDTSFGVGFA--------PLSE-- 169 (400)
T ss_pred HHHHHHHHH--HHHhhcccCCccccEEEEeeccCCchhHHHHHhhccc---CCcccccccceeccC--------CCcH--
Confidence 665554443 2111 123566644 5667888999998765543211 224799999999997 5543
Q ss_pred HHHHHHHHHHH----HHcCCCCcccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCCh-HHHHHHHHHhhccccC
Q 016215 145 ATKLGARLTEV----RKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTN-DEIAADLKEHVIKPVI 219 (393)
Q Consensus 145 Ah~l~~~l~~~----Rk~g~~~~l~pD~KtQVtv~Y~~~~g~~~p~rv~tiviS~QH~~~v~~-~~l~~~i~e~vi~~v~ 219 (393)
..+|+...+.+ --...+|-.+.|.|.-. ++ +++. --.+|.+-+||-. -++++. -++++.++++|-+-.
T Consensus 170 tErlV~etEr~lns~~~k~~~P~vGeDIKVMg-lR--~~~~--i~LTIa~a~V~~~-v~~~~~Y~~~ke~v~~~VedlA- 242 (400)
T COG1812 170 TERLVLETERYLNSPEFKKKLPAVGEDIKVMG-LR--EGDE--ISLTIAAALVDKY-VEDIDEYIEVKEEVRKHVEDLA- 242 (400)
T ss_pred HHHHHHHHHHHhcChhhcccCCCcCCceEEEE-Ee--cCCe--EEEEEehHHHHHh-hcCHHHHHHHHHHHHHHHHHHH-
Confidence 34444443332 22356899999999864 33 2111 2244445555533 344332 244555555543321
Q ss_pred CCCCCCCCcEEEECCCCCeEEc-------C---CCCCcccCCceEEEecC-CCccccccccCcCCCCC-CccchhhHHHH
Q 016215 220 PEKYLDEKTIFHLNPSGRFVIG-------G---PHGDAGLTGRKIIIDTY-GGWGAHGGGAFSGKDPT-KVDRSGAYIVR 287 (393)
Q Consensus 220 ~~~~~~~~t~~~INPtG~FviG-------G---P~~DtGLTGRKiiVDTY-Gg~a~HGGGAfSGKDpt-KVDRSaAY~AR 287 (393)
.+.-+.+-+.+||..-...-| | -+||.|.+||=.=|--- =.+-+-.==|-+||.|. -|=.-=..+|-
T Consensus 243 -~~it~~~v~v~iNtaD~~e~~~~YlTvTGTSaE~GDdGsVGRGNR~nGLITp~RpmSmEAaaGKNPvnHVGKiYN~La~ 321 (400)
T COG1812 243 -SEITDREVEVYINTADDPERGSVYLTVTGTSAEQGDDGSVGRGNRVNGLITPNRPMSMEAAAGKNPVNHVGKIYNVLAN 321 (400)
T ss_pred -hhhhccceEEEEecccccccCeEEEEeccchhhhCCCcccccccccccccCCCCCcccccccCCCchhhhHHHHHHHHH
Confidence 222234456777765443322 2 47899999995432211 12234445688999985 34444566788
Q ss_pred HHHHHHHHhc-cccccEEEEEEEeccc--cce--eEEEEe
Q 016215 288 QAAKSIVANG-LARRCIVQVSYAIGVP--EPL--SVFVDS 322 (393)
Q Consensus 288 ~iAKniVaaG-lA~~cevQlsYAIG~a--~Pv--si~V~t 322 (393)
.||+.|+.+= =.++|.|+|-=-||.| +|. ++.|-+
T Consensus 322 ~iA~~I~~ev~~v~evyv~ilsqIGkPId~P~~~~vqvi~ 361 (400)
T COG1812 322 QIANEIVEEVPGVEEVYVRILSQIGKPIDEPKVASVQVIT 361 (400)
T ss_pred HHHHHHHHhcCCcceEEEehhhhcCCcCCCCceEEEEEEe
Confidence 8888888653 2678988888888865 554 555555
No 14
>TIGR00590 pcna proliferating cell nuclear antigen (pcna). All proteins in this family for which functions are known form sliding DNA clamps that are used in DNA replication processes. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=68.13 E-value=38 Score=33.00 Aligned_cols=170 Identities=14% Similarity=0.190 Sum_probs=83.5
Q ss_pred EecCCCCCC-CCchHHHHHHHHHHHHHHHHcCCCCcccCCcceeEEEEEecCC-CceeeeEEeEEEEeeecCC--C----
Q 016215 129 YATDETSEF-MPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDN-GAMVPVRVHTVLISTQHDE--T---- 200 (393)
Q Consensus 129 YA~~ET~~~-MPl~i~lAh~l~~~l~~~Rk~g~~~~l~pD~KtQVtv~Y~~~~-g~~~p~rv~tiviS~QH~~--~---- 200 (393)
|.|++...+ +.+. .|.+-|..++++..+.+-..+...++.+.+++.+ +..+-..+..+=+...+-+ +
T Consensus 60 Y~~d~~~~~gv~l~-----~l~kiLk~~~~~d~l~l~~~~~~~~l~i~~~~~~~~~~~~f~l~l~d~~~e~l~iP~~e~~ 134 (259)
T TIGR00590 60 YRCDRNLALGVNLT-----SLSKILKCANNEDIVTLKAEDNADTLILVFESPKQDKISDYELKLMDIDVEHLGIPEQEYD 134 (259)
T ss_pred EecCCceEEEEEHH-----HHHHHHhccCCCCEEEEEecCCCCEEEEEEEcCCCCeEEEEEEEeeecccccCCCCCCcee
Confidence 777766434 3443 3556665555544444423444555666655322 2111122233323222211 1
Q ss_pred ----CChHHHHHHHHHhhccccCCCCCCCCCcEEEECCCCCeEEcCCCCCcccCCceEEEecCCCccccccccCcCCCCC
Q 016215 201 ----VTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPT 276 (393)
Q Consensus 201 ----v~~~~l~~~i~e~vi~~v~~~~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYGg~a~HGGGAfSGKDpt 276 (393)
++-+++++.+++. ..+.+...+.+.|.+ |..-+ .||.| ++...+-...+.--+-..--+.-+.|
T Consensus 135 ~~v~m~s~~f~~~~kdl--------~~v~d~v~i~~~~~~-~~f~~-~Gd~g-~~~~~~~~~~~~~~~~~~~~i~~~~~- 202 (259)
T TIGR00590 135 CVVEMPSSEFARICRDL--------SQFSDSVVISCTKEG-VKFSA-KGDIG-SGNVKLKQTSDTDKEEEAVTIEMKEP- 202 (259)
T ss_pred EEEEEEHHHHHHHHHHH--------HHcCCEEEEEEeCCE-EEEEE-Eeccc-EEEEEEecCCCCCCCcceEEEEecCc-
Confidence 1224555555444 224444556665543 33322 45666 34444433322110000000111111
Q ss_pred CccchhhHHHHHHHHHHHHhccccccEEEEEEEeccccceeEEEEe
Q 016215 277 KVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDS 322 (393)
Q Consensus 277 KVDRSaAY~AR~iAKniVaaGlA~~cevQlsYAIG~a~Pvsi~V~t 322 (393)
-++.|..||+-+-.-|+++|+++++. +|...|+.+.-+=
T Consensus 203 ---~~~~y~l~YL~~~~Ka~~ls~~V~l~----~~~~~Pl~l~y~i 241 (259)
T TIGR00590 203 ---VTLTFAIKYLNLFTKATPLSDRVTLS----MSNDVPLVVEYKI 241 (259)
T ss_pred ---eeeeeeHHHHHHhhhhccCCCeEEEE----EcCCCCEEEEEEe
Confidence 14789999998777789999987665 5789999988873
No 15
>COG1325 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=57.32 E-value=16 Score=33.75 Aligned_cols=51 Identities=22% Similarity=0.275 Sum_probs=38.1
Q ss_pred cEEEEEEEeccccceeEEEEecCCCCCCHHHHHHHHHHhCCCChHhHHhhhccccccccccccccccccCCCC
Q 016215 302 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRD 374 (393)
Q Consensus 302 cevQlsYAIG~a~Pvsi~V~tfgt~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~p~~~iY~~ta~yGHFGr~ 374 (393)
|.+|..| +++.|-.+.| -++++..++++..|+..+ +- -...+.+-||||++
T Consensus 3 ~~~~~~~-------i~~rv~iHaT--ED~~kV~eAL~~~~p~~~----------~~---e~ev~~aeGhyGNp 53 (149)
T COG1325 3 GMMQSHY-------IEIRVIIHAT--EDEEKVLEALENFFPEAI----------DV---EIEVTEAEGHYGNP 53 (149)
T ss_pred Cccccce-------EEEEEEEEcc--CCHHHHHHHHHHhcCccc----------cc---ceEEEEeecccCCe
Confidence 5666666 4566777776 678899999999998776 11 35677889999985
No 16
>PRK11023 outer membrane lipoprotein; Provisional
Probab=52.66 E-value=24 Score=33.00 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=33.8
Q ss_pred chhhhh-hHHHHHHHHhhcCCCCcEEEEEEeeeCeEEEEEEeee
Q 016215 17 DKLCDQ-ISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITT 59 (393)
Q Consensus 17 DKicDq-ISDaILDa~L~~Dp~arVA~E~~v~~~~V~i~GEitt 59 (393)
+...|. |+..|-.+++..+.-....++|.+.+|.|++.|++++
T Consensus 121 ~~~~D~~It~kik~~L~~~~~v~~~~I~V~t~~G~V~L~G~v~~ 164 (191)
T PRK11023 121 TASKDTWITTKVRSQLLTSDSVKSSNVKVTTENGEVFLLGLVTQ 164 (191)
T ss_pred cccCcHHHHHHHHHHHhcCCCCCcceEEEEEECcEEEEEEEeCH
Confidence 455554 7778888888877666677888888999999999964
No 17
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=48.31 E-value=32 Score=30.86 Aligned_cols=40 Identities=13% Similarity=0.141 Sum_probs=33.6
Q ss_pred hhhhHHHHHHHHhhcCCCCcEEEEEEeeeCeEEEEEEeeee
Q 016215 20 CDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTK 60 (393)
Q Consensus 20 cDqISDaILDa~L~~Dp~arVA~E~~v~~~~V~i~GEitt~ 60 (393)
..+|+|+|+.++-++...+.- +.|.+.+|.|.+.|.+.+.
T Consensus 24 ~~~~~~~i~~~i~~~~~~~~~-i~V~v~~G~v~l~G~v~s~ 63 (147)
T PRK11198 24 NEDAADALKEHISKQGLGDAD-VNVQVEDGKATVSGDAASQ 63 (147)
T ss_pred hHHHHHHHHHHHHhcCCCcCC-ceEEEeCCEEEEEEEeCCH
Confidence 489999999998888766554 6788899999999998874
No 18
>PF02980 FokI_C: Restriction endonuclease FokI, catalytic domain; InterPro: IPR004233 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. Thie entry represents the type IIS restriction endonuclease FokI (3.1.21.4 from EC), which is a member of an unusual class of bipartite restriction enzymes that recognise a specific DNA sequence and cleave DNA nonspecifically a short distance away from that sequence []. FokI contains amino- and carboxy-terminal domains corresponding to the DNA-recognition (IPR004234 from INTERPRO) and cleavage functions, respectively. The catalytic domain contains only a single catalytic centre, raising the question of how monomeric FokI manages to cleave both DNA strands. The catalytic domain is sequestered in a 'piggyback' fashion by the recognition domain [].; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system; PDB: 1FOK_A 2FOK_B.
Probab=45.38 E-value=21 Score=32.80 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=27.2
Q ss_pred ccchhhHHHHHHHHHHHHhccccccEEEEEEEecccc
Q 016215 278 VDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPE 314 (393)
Q Consensus 278 VDRSaAY~AR~iAKniVaaGlA~~cevQlsYAIG~a~ 314 (393)
++=++==||||||.-++..||+.+....+.+-+|..+
T Consensus 77 ~EgTSDKYaR~I~~wL~k~glv~~~~k~vt~~~~~~~ 113 (142)
T PF02980_consen 77 WEGTSDKYARMICGWLKKVGLVEQKTKKVTRTIGGRK 113 (142)
T ss_dssp ---HHHHHHHHHHHHHHHTTSEEE--EEEE-BTTBTT
T ss_pred cccchHHHHHHHHHHHHHhchheecceEEEeeccCcc
Confidence 3456677899999999999999999999988777654
No 19
>PF14084 DUF4264: Protein of unknown function (DUF4264)
Probab=43.74 E-value=6.8 Score=30.32 Aligned_cols=39 Identities=26% Similarity=0.281 Sum_probs=26.6
Q ss_pred CCChhhhcccCCCCCCCCCCCCCCcceeeEeEecCCCCCCCCchH
Q 016215 98 QQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSH 142 (393)
Q Consensus 98 ~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i 142 (393)
+.++|+-.-||.- + .---|+++|||.+-||-++-|-++|
T Consensus 11 ~~~~dlYKvVDfL-N-----ktLK~~~lmFGLs~d~~~~k~vitI 49 (52)
T PF14084_consen 11 EYNDDLYKVVDFL-N-----KTLKDKNLMFGLSKDEKEEKMVITI 49 (52)
T ss_pred cCCccHHHHHHHH-h-----hhhhhccEEEEEeecCcCCEEEEEE
Confidence 4567777777631 1 1234899999999987777775544
No 20
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=33.78 E-value=51 Score=26.75 Aligned_cols=57 Identities=25% Similarity=0.409 Sum_probs=39.8
Q ss_pred eeEEeEEEEeeecCCCCChHHHHHHHHHhhc-ccc-CCC---CCCCCCcEEEECCCCCeEEcC
Q 016215 185 PVRVHTVLISTQHDETVTNDEIAADLKEHVI-KPV-IPE---KYLDEKTIFHLNPSGRFVIGG 242 (393)
Q Consensus 185 p~rv~tiviS~QH~~~v~~~~l~~~i~e~vi-~~v-~~~---~~~~~~t~~~INPtG~FviGG 242 (393)
-.+|.+||-|..=.-++++++|...+ +.+- +|- +|. .+-+++..++|=+||++++-|
T Consensus 3 ~~~i~NIva~~~l~~~idL~~la~~~-~~~~YePe~fpgl~~r~~~p~~t~~IF~sGki~itG 64 (86)
T PF00352_consen 3 DFKIVNIVASFDLPFEIDLEELAEEL-ENVEYEPERFPGLIYRLRNPKATVLIFSSGKIVITG 64 (86)
T ss_dssp EEEEEEEEEEEE-SSEB-HHHHHHHS-TTEEEETTTESSEEEEETTTTEEEEEETTSEEEEEE
T ss_pred ccEEEEEEEEEECCCccCHHHHHhhc-cCcEEeeccCCeEEEeecCCcEEEEEEcCCEEEEEe
Confidence 36899999999999999999998877 3332 221 222 122457789999999998766
No 21
>PF04208 MtrA: Tetrahydromethanopterin S-methyltransferase, subunit A ; InterPro: IPR013340 This domain is mostly found in N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit A (MtrA) in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the N-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism. ; GO: 0008168 methyltransferase activity, 0030269 tetrahydromethanopterin S-methyltransferase activity
Probab=32.12 E-value=54 Score=31.18 Aligned_cols=41 Identities=27% Similarity=0.359 Sum_probs=32.9
Q ss_pred cCCCCcEEEEEEeeeCe-------EEEEEEeeeeeeccHHHHHHHHHHh
Q 016215 34 QDPESKVACETCTKTNM-------VMVFGEITTKAKVDYEKIVRDTCRS 75 (393)
Q Consensus 34 ~Dp~arVA~E~~v~~~~-------V~i~GEitt~a~vd~~~ivR~~l~~ 75 (393)
-||+|+||+=|+.++.. .-|+|-..|. .+=+++++++++.+
T Consensus 18 Gdp~S~VAV~TL~S~~~~~~l~~gaAI~G~~~TE-NlGIEKvI~NvisN 65 (176)
T PF04208_consen 18 GDPESPVAVCTLGSHLLQAPLDAGAAIAGPCKTE-NLGIEKVIANVISN 65 (176)
T ss_pred CCCCCCEEEEECccccchhhhhcCceeeeccccc-ccCHHHHHHHHhcC
Confidence 48999999999988665 4566766665 77899999999765
No 22
>KOG3447 consensus Mitochondrial/chloroplast ribosomal S17-like protein [Translation, ribosomal structure and biogenesis]
Probab=31.26 E-value=17 Score=33.30 Aligned_cols=12 Identities=50% Similarity=0.584 Sum_probs=11.2
Q ss_pred cCCceEEEecCC
Q 016215 249 LTGRKIIIDTYG 260 (393)
Q Consensus 249 LTGRKiiVDTYG 260 (393)
+||||+.+|||-
T Consensus 95 vTGkk~~~~ty~ 106 (150)
T KOG3447|consen 95 VTGKKCAGDTYL 106 (150)
T ss_pred CcCccccCcchh
Confidence 799999999995
No 23
>TIGR02889 spore_YpeB germination protein YpeB. Members of this family are YpeB, a protein usually encoded with the putative spore-cortex-lytic enzyme SleB and required, together with SleB, for normal germination. This family is retricted to endospore-forming species in the Firmicutes lineage of bacteria, and found in all such species to date except Clostridium perfringens. The matching phenotypes of mutants in SleB (called a lytic transglycosylase) and YpeB suggests that YpeB is necessary to allow SleB to function.
Probab=30.16 E-value=2.5e+02 Score=30.00 Aligned_cols=97 Identities=16% Similarity=0.216 Sum_probs=60.7
Q ss_pred CcEEEEEEeeeCeEE--EEEEeeeeeeccHH---HHHHHHHHhhCCCCCC--CCCCCCceEEEEeecCCChhhhcccCCC
Q 016215 38 SKVACETCTKTNMVM--VFGEITTKAKVDYE---KIVRDTCRSIGFVSDD--VGLDADHCKVLVNIEQQSPDIAQGVHGH 110 (393)
Q Consensus 38 arVA~E~~v~~~~V~--i~GEitt~a~vd~~---~ivR~~l~~IGY~~~~--~gfd~~~~~v~~~i~~QS~dIa~gV~~~ 110 (393)
..+-|++..++|.++ +-..-..+..+|.+ +++++-|+++||.+.. +--.++...+++.+..|. ||.--
T Consensus 262 ~~~~~~vsk~GG~~i~~l~~R~v~~~~is~~eA~~kA~~fL~~~G~~nm~~ty~~~~d~~~~~~yv~~~~-----gV~iY 336 (435)
T TIGR02889 262 ARIYMNVSKKGGHPLWFLDNRPVSKPKISLNEAVNKAKKFLEKIGFKDMEPTESDKYDNVGVISYVYVQN-----DVRVY 336 (435)
T ss_pred ceEEEEEEcCCCEEEEEEcCCCCCCCCcCHHHHHHHHHHHHHHcCcccceehhhhccCCEEEEEEEEeeC-----CEEEc
Confidence 458899999999776 33332234567776 5789999999997643 112223445666666664 44210
Q ss_pred CCCCCCCC-CCCcceeeEeE-----ecCCCCCCCCch
Q 016215 111 FTKRPEDI-GAGDQGHMFGY-----ATDETSEFMPLS 141 (393)
Q Consensus 111 ~~~~~~~~-GAGDQGimfGY-----A~~ET~~~MPl~ 141 (393)
.+.-.+ -|-|.|=+.|| -+++++.=+|-|
T Consensus 337 --pd~IkVkVALDnGeIiGf~a~~Yl~~h~~R~ip~p 371 (435)
T TIGR02889 337 --PDQIKVKVALDDGDVVGFDARQYLTSHRKRTLPKP 371 (435)
T ss_pred --CCeEEEEEEccCCeEEEEecccchhhcccccCCCC
Confidence 011112 38899999999 777776556766
No 24
>cd01269 PLX Pollux (PLX) Phosphotyrosine-binding (PTB) domain. Pollux (PLX) Phosphotyrosine-binding (PTB) domain. PLX is calmodulin-binding protein containing a TBC domain, which is conserved from yeast to man, but it only has an N-terminal PTB domain in mammals. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=28.27 E-value=1.7e+02 Score=26.57 Aligned_cols=43 Identities=14% Similarity=0.142 Sum_probs=32.3
Q ss_pred EEEEEEeeeeeeccHHHHHHHHHHhhCCCCCCCCCCCCceEEE
Q 016215 51 VMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVL 93 (393)
Q Consensus 51 V~i~GEitt~a~vd~~~ivR~~l~~IGY~~~~~gfd~~~~~v~ 93 (393)
|+..|.++-..+--.+.++++.|++.++.+....-+.+|...+
T Consensus 6 ~~~~~~~~~~~~~~~~~li~e~I~K~~~~~~~kr~~nrtm~~~ 48 (129)
T cd01269 6 VLYCGRVTVTHKKAPSSLIDDCIEKFSLHEQQRLKDNRTMLFQ 48 (129)
T ss_pred EEEEeeEEEeeccCChHHHHHHHHHhhhhhhhhccCCcEEEEE
Confidence 5567777765555568999999999999987777777775433
No 25
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=28.24 E-value=20 Score=36.84 Aligned_cols=50 Identities=34% Similarity=0.500 Sum_probs=33.4
Q ss_pred EEecCCCcc----ccccccCcCCCCCCccchhhHHHHHH----HHHHHHhccccccEEEEEEEeccccceeEE
Q 016215 255 IIDTYGGWG----AHGGGAFSGKDPTKVDRSGAYIVRQA----AKSIVANGLARRCIVQVSYAIGVPEPLSVF 319 (393)
Q Consensus 255 iVDTYGg~a----~HGGGAfSGKDptKVDRSaAY~AR~i----AKniVaaGlA~~cevQlsYAIG~a~Pvsi~ 319 (393)
|||-|||.+ --||||. |--.||+--.. -|.++-. .--+|--|+..|.++.
T Consensus 185 IVDGmgGttgf~gylg~g~M--------D~ElAYaLa~~~~~fsK~~lf~-------gGa~~i~gv~sp~ef~ 242 (374)
T COG2441 185 IVDGMGGTTGFTGYLGGGAM--------DGELAYALANYLERFSKSLLFE-------GGAAYIAGVDSPEEFV 242 (374)
T ss_pred EEeccCCccCcccccccccc--------cHHHHHHHHHhhhhccHhheec-------ccccccccCCCHHHHH
Confidence 889999954 4567776 45688876533 3666533 3446878888887653
No 26
>PRK10568 periplasmic protein; Provisional
Probab=27.62 E-value=1e+02 Score=29.04 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=31.7
Q ss_pred hHHHHHHHHhhcCCCCcEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCC
Q 016215 23 ISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGF 78 (393)
Q Consensus 23 ISDaILDa~L~~Dp~arVA~E~~v~~~~V~i~GEitt~a~vd~~~ivR~~l~~IGY 78 (393)
|+..|-.+++..+.-..-.+.+.+.+|.|.+.|++.+.+. .+.+.++.+++-.
T Consensus 61 I~~~v~~~L~~~~~i~~~~I~V~v~~G~V~L~G~V~s~~~---~~~a~~ia~~v~G 113 (203)
T PRK10568 61 ITAKVKAALVDHDNIKSTDISVKTHQKVVTLSGFVESQAQ---AEEAVKVAKGVEG 113 (203)
T ss_pred HHHHHHHHHHhCCCCCCCceEEEEECCEEEEEEEeCCHHH---HHHHHHHHHhCCC
Confidence 4445555555433333345778888999999999987432 2334445555433
No 27
>PRK11023 outer membrane lipoprotein; Provisional
Probab=24.39 E-value=1.2e+02 Score=28.42 Aligned_cols=42 Identities=19% Similarity=0.232 Sum_probs=29.4
Q ss_pred hhhhh-hHHHHHHHHhhcCCCCc--EEEEEEeeeCeEEEEEEeeee
Q 016215 18 KLCDQ-ISDAVLDACLEQDPESK--VACETCTKTNMVMVFGEITTK 60 (393)
Q Consensus 18 KicDq-ISDaILDa~L~~Dp~ar--VA~E~~v~~~~V~i~GEitt~ 60 (393)
++-|+ |+-.|..+ |.+||.-+ -.+.+-+.+|.|.+.|++.+.
T Consensus 44 ~~dD~~i~~~V~~a-L~~~~~l~~~~~I~V~v~~G~V~L~G~V~~~ 88 (191)
T PRK11023 44 QVDDGTLELRVNNA-LSKDEQIKKEARINVTAYQGKVLLTGQSPNA 88 (191)
T ss_pred eehhHHHHHHHHHH-HhhCcccCcCceEEEEEECCEEEEEEEeCCH
Confidence 44444 44444454 45577554 478899999999999999885
No 28
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=23.94 E-value=61 Score=31.35 Aligned_cols=22 Identities=23% Similarity=0.132 Sum_probs=16.3
Q ss_pred CCCCCCchHHHHHHHHHHHHHH
Q 016215 134 TSEFMPLSHVLATKLGARLTEV 155 (393)
Q Consensus 134 T~~~MPl~i~lAh~l~~~l~~~ 155 (393)
.+--+|.|+.+||+|++|....
T Consensus 279 ~~~~lP~p~~yA~~~a~~~~~~ 300 (302)
T PF02171_consen 279 GPISLPAPLYYAHKLAKRGRNN 300 (302)
T ss_dssp S--SS-HHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHHhh
Confidence 4556999999999999998653
No 29
>PRK04964 hypothetical protein; Provisional
Probab=23.08 E-value=64 Score=26.10 Aligned_cols=20 Identities=35% Similarity=0.604 Sum_probs=15.9
Q ss_pred CCCCCcceeeEeEecCCCCCCCCchHHHHHHH
Q 016215 117 DIGAGDQGHMFGYATDETSEFMPLSHVLATKL 148 (393)
Q Consensus 117 ~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~l 148 (393)
+||.|||| |+|-+|..|-|-
T Consensus 14 ~IgSGd~g------------YiP~Ai~ca~k~ 33 (66)
T PRK04964 14 EIGSGDLG------------YVPDALGCVLKA 33 (66)
T ss_pred HhcCCccc------------cCcHHHHHHHHH
Confidence 68999997 589988877553
No 30
>PRK14053 methyltransferase; Provisional
Probab=23.02 E-value=1e+02 Score=29.71 Aligned_cols=42 Identities=24% Similarity=0.379 Sum_probs=33.8
Q ss_pred hcCCCCcEEEEEEeeeCe----EEEEEEeeeeeeccHHHHHHHHHHh
Q 016215 33 EQDPESKVACETCTKTNM----VMVFGEITTKAKVDYEKIVRDTCRS 75 (393)
Q Consensus 33 ~~Dp~arVA~E~~v~~~~----V~i~GEitt~a~vd~~~ivR~~l~~ 75 (393)
--||+|+||+=|+.++-. .-|.|-..|. .+=+++++++++.+
T Consensus 17 vG~~~S~VAVvTL~S~~~~~~gaAI~G~c~TE-NlGIEKvI~NvisN 62 (194)
T PRK14053 17 VGNPESRIAVVTLASSIESFPEAAIWGSSKTE-NLGVEKIIVNVISN 62 (194)
T ss_pred eCCCCCcEEEEEccccccccCCceEEeecccc-ccCHHHHHHHhhcC
Confidence 348999999999999754 5667776665 78899999999765
No 31
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=22.90 E-value=87 Score=30.74 Aligned_cols=37 Identities=32% Similarity=0.547 Sum_probs=31.5
Q ss_pred EEEEEeccccceeEEEEecCCCCCCHHHHHHHHHHhCC
Q 016215 305 QVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFD 342 (393)
Q Consensus 305 QlsYAIG~a~Pvsi~V~tfgt~~~~~~~i~~~v~~~Fd 342 (393)
|--|+||. -|+++-.-++|++|++-.+|.+-++..+-
T Consensus 197 ~~~y~IgE-vPitFvdR~~GeSKLg~~eIv~ylk~l~~ 233 (238)
T KOG2978|consen 197 QHGYTIGE-VPITFVDRTYGESKLGGKEIVQYLKGLLY 233 (238)
T ss_pred ccCceEee-cceEEEeeccccccccHHHHHHHHHHHhh
Confidence 45699996 59999999999999999999988876543
No 32
>PRK00394 transcription factor; Reviewed
Probab=22.07 E-value=1.5e+02 Score=27.76 Aligned_cols=81 Identities=21% Similarity=0.301 Sum_probs=55.5
Q ss_pred eEEeEEEEeeecCCCCChHHHHHHHHHhhccc-cCCC---CCCCCCcEEEECCCCCeEEcCCCCCcccCCceEEEecCCC
Q 016215 186 VRVHTVLISTQHDETVTNDEIAADLKEHVIKP-VIPE---KYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGG 261 (393)
Q Consensus 186 ~rv~tiviS~QH~~~v~~~~l~~~i~e~vi~~-v~~~---~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYGg 261 (393)
++|.+||-|++=...+++++|...+..--=+| .+|. .+-+.+..++|=.||++++=|
T Consensus 1 i~i~NvVas~~l~~~ldL~~la~~~~n~eYePe~fpgli~Rl~~Pk~t~lIf~sGKiv~tG------------------- 61 (179)
T PRK00394 1 IKIENIVASTDLGQELDLEKVAEDLPNAEYNPEQFPGLVYRLEDPKIAALIFRSGKVVCTG------------------- 61 (179)
T ss_pred CEEEEEEEEEEcCCCcCHHHHHhhCCCceeCcccCceEEEEecCCceEEEEEcCCcEEEEc-------------------
Confidence 36889999999999999999986654432233 2232 112457789999999999644
Q ss_pred ccccccccCcCCCCCCccchhhHHHHHHHHHHHHhccc
Q 016215 262 WGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLA 299 (393)
Q Consensus 262 ~a~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA 299 (393)
.|--..+.-+++.+++.|-..|.-
T Consensus 62 --------------a~S~~~a~~a~~~~~~~l~~~g~~ 85 (179)
T PRK00394 62 --------------AKSVEDLHEAVKIIIKKLKELGIK 85 (179)
T ss_pred --------------cCCHHHHHHHHHHHHHHHHHcCCC
Confidence 122236666778888888777754
No 33
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=22.00 E-value=1.3e+02 Score=28.05 Aligned_cols=81 Identities=20% Similarity=0.317 Sum_probs=58.9
Q ss_pred eEEeEEEEeeecCCCCChHHHHHHHHHhhccc-cCCC---CCCCCCcEEEECCCCCeEEcCCCCCcccCCceEEEecCCC
Q 016215 186 VRVHTVLISTQHDETVTNDEIAADLKEHVIKP-VIPE---KYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGG 261 (393)
Q Consensus 186 ~rv~tiviS~QH~~~v~~~~l~~~i~e~vi~~-v~~~---~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYGg 261 (393)
++|++||-|++=...+++++|...+..---.| -+|. .+-+.+..++|=.+|++++=|
T Consensus 2 ~~I~NvVas~~l~~~ldL~~la~~~~n~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~tG------------------- 62 (174)
T cd04518 2 LKIENIVASVDLGQELDLEKVAAELPNAEYNPDQFPGLVYRLEDPKIAALIFRSGKMVCTG------------------- 62 (174)
T ss_pred cEEEEEEEEEEcCCeecHHHHHhhCCCcEECCCcCcEEEEEccCCcEEEEEECCCeEEEEc-------------------
Confidence 47899999999999999999987665543344 2332 122456789999999999755
Q ss_pred ccccccccCcCCCCCCccchhhHHHHHHHHHHHHhccc
Q 016215 262 WGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLA 299 (393)
Q Consensus 262 ~a~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA 299 (393)
.|--..+..+++.++|-|-..|.-
T Consensus 63 --------------aks~~~a~~a~~~~~~~L~~~g~~ 86 (174)
T cd04518 63 --------------AKSVEDLHRAVKEIIKKLKDYGIK 86 (174)
T ss_pred --------------cCCHHHHHHHHHHHHHHHHhcCCC
Confidence 334456777889999988888754
No 34
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=21.97 E-value=1e+02 Score=32.74 Aligned_cols=54 Identities=22% Similarity=0.287 Sum_probs=38.1
Q ss_pred eEEEEecCCCCCCHHHHHHHHHHhCCCC-----------------hHhHHhhhcccccccccccc---ccccccC
Q 016215 317 SVFVDSYGTGKIPDKEILKIVKESFDFR-----------------PGMMTINLDLKRGGNGRFLK---TAAYGHF 371 (393)
Q Consensus 317 si~V~tfgt~~~~~~~i~~~v~~~Fdl~-----------------p~~Ii~~L~L~~p~~~iY~~---ta~yGHF 371 (393)
-|.|||-|-+-.+...+.++ ++.|+.. -..|++.|.+-...+.|+-+ |.+||||
T Consensus 284 ~ILVDTaGrs~~D~~~i~el-~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i~~~I~TKlDET~s~G~~ 357 (407)
T COG1419 284 VILVDTAGRSQYDKEKIEEL-KELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFPIDGLIFTKLDETTSLGNL 357 (407)
T ss_pred EEEEeCCCCCccCHHHHHHH-HHHHhccccceEEEEEecCcchHHHHHHHHHhccCCcceeEEEcccccCchhHH
Confidence 37899999988888777665 4455555 35677887777776667654 5666665
No 35
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=21.63 E-value=1.5e+02 Score=27.69 Aligned_cols=57 Identities=14% Similarity=0.216 Sum_probs=42.7
Q ss_pred eEEeEEEEeeecCCCCChHHHHHHHHHhhccccCCC---CCCCCCcEEEECCCCCeEEcC
Q 016215 186 VRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPE---KYLDEKTIFHLNPSGRFVIGG 242 (393)
Q Consensus 186 ~rv~tiviS~QH~~~v~~~~l~~~i~e~vi~~v~~~---~~~~~~t~~~INPtG~FviGG 242 (393)
++|.+||-|.+=...++++++...+..-.=+|.+|. .+-+.+...+|=.+|++++=|
T Consensus 3 ~~i~Nvvas~~l~~~idL~~la~~l~n~eYeP~fpgli~R~~~Pk~t~lIF~sGKiviTG 62 (174)
T cd04517 3 ILIVNVVCQFSLRCHIDLRKLALAGRNVEYNPRYPKVTMRLREPRATASVWSSGKITITG 62 (174)
T ss_pred cEEEEEEEEEEcCCcccHHHHHhhCCCCEEeCCCCEEEEEecCCcEEEEEECCCeEEEEc
Confidence 578999999998889999999776655445554443 223466788999999999655
No 36
>PF06786 UPF0253: Uncharacterised protein family (UPF0253); InterPro: IPR009624 This is a group of proteins of unknown function.
Probab=21.60 E-value=73 Score=25.77 Aligned_cols=20 Identities=45% Similarity=0.692 Sum_probs=16.0
Q ss_pred CCCCCcceeeEeEecCCCCCCCCchHHHHHHH
Q 016215 117 DIGAGDQGHMFGYATDETSEFMPLSHVLATKL 148 (393)
Q Consensus 117 ~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~l 148 (393)
+||.|||| |+|-+|..|-+-
T Consensus 14 ~IgSGd~g------------YiP~Ai~calk~ 33 (66)
T PF06786_consen 14 QIGSGDQG------------YIPDAIGCALKT 33 (66)
T ss_pred HhcCCccc------------cCcHHHHHHHHH
Confidence 68999997 589988877553
No 37
>PF07918 CAP160: CAP160 repeat; InterPro: IPR012418 This region featured in this family is repeated in spinach cold acclimation protein CAP160 (O50054 from SWISSPROT) CAP160 is induced during periods of drought stress; its precise function is unknown but it has been implicated in the stabilisation of membranes, cytoskeletal elements, and ribosomes. By acting as a compatible solute, it may reduce the toxic effects of cellular solutes that accumulate at high concentration []. Other members of this family are also induced by water stress, abscisic acid, and/or low temperature, such as desiccation-responsive protein 29B (Q04980 from SWISSPROT) and CDet11-24 protein (O23764 from SWISSPROT).
Probab=21.52 E-value=48 Score=22.56 Aligned_cols=10 Identities=50% Similarity=0.677 Sum_probs=8.3
Q ss_pred HHHHHHHhcc
Q 016215 289 AAKSIVANGL 298 (393)
Q Consensus 289 iAKniVaaGl 298 (393)
.|||+||+.|
T Consensus 14 ~AknvvaSKL 23 (27)
T PF07918_consen 14 SAKNVVASKL 23 (27)
T ss_pred HHHHHHHHhc
Confidence 4899999865
No 38
>PRK00964 tetrahydromethanopterin S-methyltransferase subunit A; Provisional
Probab=20.69 E-value=1e+02 Score=30.32 Aligned_cols=42 Identities=26% Similarity=0.337 Sum_probs=33.3
Q ss_pred hcCCCCcEEEEEEeeeCe--------EEEEEEeeeeeeccHHHHHHHHHHh
Q 016215 33 EQDPESKVACETCTKTNM--------VMVFGEITTKAKVDYEKIVRDTCRS 75 (393)
Q Consensus 33 ~~Dp~arVA~E~~v~~~~--------V~i~GEitt~a~vd~~~ivR~~l~~ 75 (393)
--||+|.||+=||.++.. .-|.|-..|. .+=+++++++++.+
T Consensus 20 vGd~~SpVAV~Tl~S~~~~~~~~~agaAi~G~~~TE-NlGIEKvI~NvisN 69 (225)
T PRK00964 20 VGDPESPVAVVTLGSHLLDQPIIDAGAAISGPCHTE-NLGIEKVIANVISN 69 (225)
T ss_pred eCCCCCceEEEEccccccccchhhcCceeecccccc-cccHHHHHHHHhcC
Confidence 359999999999998765 3456666665 78899999999765
No 39
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=20.52 E-value=1.4e+02 Score=28.74 Aligned_cols=56 Identities=21% Similarity=0.337 Sum_probs=40.6
Q ss_pred eEEeEEEEeeecCCCCChHHHHHHHHHhhccc-cCCC---CCCCCCcEEEECCCCCeEEc
Q 016215 186 VRVHTVLISTQHDETVTNDEIAADLKEHVIKP-VIPE---KYLDEKTIFHLNPSGRFVIG 241 (393)
Q Consensus 186 ~rv~tiviS~QH~~~v~~~~l~~~i~e~vi~~-v~~~---~~~~~~t~~~INPtG~FviG 241 (393)
++|.+||-|+.-..+++++++...+..---.| -+|. .+-+.++.++|=-||+.|+=
T Consensus 8 i~IeNIVAS~~L~~elDL~~~~~~l~~aeYnP~qFpGlv~Rl~ePk~a~LIF~SGK~VcT 67 (185)
T COG2101 8 ITIENIVASVDLGQELDLEEVALDLPGAEYNPEQFPGLVYRLEEPKTAALIFRSGKVVCT 67 (185)
T ss_pred cEEEEEEEEechhhhccHHHHHhhCCCCccCHhHCCeeEEEecCCcceEEEEecCcEEEe
Confidence 78999999999999999998877655432222 2332 11246789999999999953
No 40
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=20.06 E-value=1.8e+02 Score=27.09 Aligned_cols=58 Identities=28% Similarity=0.453 Sum_probs=40.9
Q ss_pred eeEEeEEEEeeecCCCCChHHHHHHHHHhhccc-cCCC---CCCCCCcEEEECCCCCeEEcC
Q 016215 185 PVRVHTVLISTQHDETVTNDEIAADLKEHVIKP-VIPE---KYLDEKTIFHLNPSGRFVIGG 242 (393)
Q Consensus 185 p~rv~tiviS~QH~~~v~~~~l~~~i~e~vi~~-v~~~---~~~~~~t~~~INPtG~FviGG 242 (393)
..+|++||-|+.=.-.++++.+...+..--=+| .+|. .+.+.+..++|=+||+.++=|
T Consensus 92 ~~~i~NIVas~~l~~~i~L~~la~~~~~~~YePe~fpglvyR~~~pk~~~lIF~SGKvvitG 153 (174)
T cd04518 92 EIKVQNIVASADLGREVNLDAIAIGLPNAEYEPEQFPGLVYRLDEPKVVLLLFSSGKMVITG 153 (174)
T ss_pred ceEEEEEEEEEEcCCccCHHHHHhhCCCCccCcccCceEEEEecCCcEEEEEeCCCEEEEEe
Confidence 378999999998888999999876544222222 2332 123467889999999999755
Done!