RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 016215
(393 letters)
>d2p02a3 d.130.1.1 (A:274-417) S-adenosylmethionine synthetase
{Human (Homo sapiens), isoform type-2 [TaxId: 9606]}
Length = 144
Score = 208 bits (532), Expect = 9e-68
Identities = 96/149 (64%), Positives = 115/149 (77%), Gaps = 5/149 (3%)
Query: 240 IGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLA 299
IGGP GDAGLTGRKII+DTYGGWGAHGGGAFSGKD TKVDRS AY R AKS+V GL
Sbjct: 1 IGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKGGLC 60
Query: 300 RRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGN 359
RR +VQVSYAIGV PLS+ + YGT + ++E+L+IVK++FD RPG++ +LDLK+
Sbjct: 61 RRVLVQVSYAIGVSHPLSISIFHYGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKK--- 117
Query: 360 GRFLKTAAYGHFGRDDPDFTWEVVKPLKW 388
+ +TAAYGHFGRD F WEV K LK+
Sbjct: 118 PIYQRTAAYGHFGRD--SFPWEVPKKLKY 144
>d1mxaa3 d.130.1.1 (A:232-383) S-adenosylmethionine synthetase
{Escherichia coli [TaxId: 562]}
Length = 152
Score = 198 bits (506), Expect = 8e-64
Identities = 85/142 (59%), Positives = 103/142 (72%), Gaps = 5/142 (3%)
Query: 240 IGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLA 299
IGGP GD GLTGRKII+DTYGG HGGGAFSGKDP+KVDRS AY R AK+IVA GLA
Sbjct: 1 IGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLA 60
Query: 300 RRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGN 359
RC +QVSYAIGV EP S+ V+++GT K+P +++ +V+E FD RP + LDL
Sbjct: 61 DRCEIQVSYAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLLH--- 117
Query: 360 GRFLKTAAYGHFGRDDPDFTWE 381
+ +TAAYGHFGR+ F WE
Sbjct: 118 PIYKETAAYGHFGRE--HFPWE 137
>d2p02a2 d.130.1.1 (A:148-273) S-adenosylmethionine synthetase
{Human (Homo sapiens), isoform type-2 [TaxId: 9606]}
Length = 126
Score = 178 bits (452), Expect = 4e-56
Identities = 85/124 (68%), Positives = 98/124 (79%)
Query: 116 EDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVE 175
EDIGAGDQG MFGYATDET E MPL+ VLA KL A+L E+R+N T WLRPD KTQVTV+
Sbjct: 3 EDIGAGDQGLMFGYATDETEECMPLTIVLAHKLNAKLAELRRNGTLPWLRPDSKTQVTVQ 62
Query: 176 YYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPS 235
Y D GA++P+RVHT++IS QHDE V DE+ LKE VIK V+P KYLDE TI+HL PS
Sbjct: 63 YMQDRGAVLPIRVHTIVISVQHDEEVCLDEMRDALKEKVIKAVVPAKYLDEDTIYHLQPS 122
Query: 236 GRFV 239
GRFV
Sbjct: 123 GRFV 126
>d1mxaa2 d.130.1.1 (A:108-231) S-adenosylmethionine synthetase
{Escherichia coli [TaxId: 562]}
Length = 124
Score = 172 bits (438), Expect = 6e-54
Identities = 57/127 (44%), Positives = 76/127 (59%), Gaps = 4/127 (3%)
Query: 113 KRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQV 172
P + GAGDQG MFGYAT+ET MP A +L R EVRKN T WLRPD K+QV
Sbjct: 2 ADPLEQGAGDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQV 61
Query: 173 TVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHL 232
T +Y + V + V++STQH E + + + E +IKP++P ++L T F +
Sbjct: 62 TFQYDDGK----IVGIDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATKFFI 117
Query: 233 NPSGRFV 239
NP+GRFV
Sbjct: 118 NPTGRFV 124
>d2p02a1 d.130.1.1 (A:38-147) S-adenosylmethionine synthetase {Human
(Homo sapiens), isoform type-2 [TaxId: 9606]}
Length = 110
Score = 164 bits (416), Expect = 6e-51
Identities = 70/106 (66%), Positives = 85/106 (80%)
Query: 3 TFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAK 62
TFLFTSESV EGHPDK+CDQISDAVLDA L+QDP++KVACET KT M+++ GEIT++A
Sbjct: 2 TFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAA 61
Query: 63 VDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVH 108
VDY+K+VR+ + IG+ G D C VLV +EQQSPDIAQGVH
Sbjct: 62 VDYQKVVREAVKHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQGVH 107
>d1mxaa1 d.130.1.1 (A:1-102) S-adenosylmethionine synthetase
{Escherichia coli [TaxId: 562]}
Length = 102
Score = 151 bits (383), Expect = 5e-46
Identities = 67/100 (67%), Positives = 79/100 (79%)
Query: 4 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKV 63
LFTSESV+EGHPDK+ DQISDAVLDA LEQDP+++VACET KT MV+V GEITT A V
Sbjct: 3 HLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWV 62
Query: 64 DYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDI 103
D E+I R+T R IG+V D+G DA+ C VL I +QSPDI
Sbjct: 63 DIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDI 102
>d1in4a1 a.4.5.11 (A:255-329) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 75
Score = 27.7 bits (62), Expect = 0.59
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 6/47 (12%)
Query: 330 DKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDP 376
+ + L V E + + G L R GR + AY H + P
Sbjct: 35 EADTLSEVYEPYLLQAGF------LARTPRGRIVTEKAYKHLKYEVP 75
>d1ixsb1 a.4.5.11 (B:243-318) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 76
Score = 26.9 bits (60), Expect = 0.90
Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 6/60 (10%)
Query: 317 SVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDP 376
V + + T D L+ V E + R G+ LKR GR AY H G P
Sbjct: 22 PVGLATLATALSEDPGTLEEVHEPYLIRQGL------LKRTPRGRVATELAYRHLGYPPP 75
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
[TaxId: 7054]}
Length = 541
Score = 28.3 bits (62), Expect = 1.6
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 273 KDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSY---GTGKIP 329
D + A +V + K++ + QV+ A + + VFVD TGK+
Sbjct: 470 PDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGV-VFVDEVPKGLTGKLD 528
Query: 330 DKEILKIVKES 340
++I +I+ ++
Sbjct: 529 ARKIREILIKA 539
>d1sr4c_ b.42.2.1 (C:) Cytolethal distending toxin subunit C
{Haemophilus ducreyi [TaxId: 730]}
Length = 154
Score = 26.4 bits (58), Expect = 4.0
Identities = 13/82 (15%), Positives = 22/82 (26%), Gaps = 9/82 (10%)
Query: 22 QISDAVLDACLEQDPESKVACETCTKTNMVMVFGEI-TTKAKVDYEKIVRDTCRSIGFVS 80
Q C + C+ T VF I T + + C +
Sbjct: 63 QFKVVGAAKCFAFLGKGTTDCKDTDHT----VFNLIPTNTGAFLIKDALLGFCIT-SHDF 117
Query: 81 DDVGLD---ADHCKVLVNIEQQ 99
DD+ L+ ++ Q
Sbjct: 118 DDLKLEPCGGSVSGRTFSLAYQ 139
>d2fiqa1 c.1.10.7 (A:1-420) Putative tagatose 6-phosphate kinase 1
GatZ {Escherichia coli [TaxId: 562]}
Length = 420
Score = 26.7 bits (59), Expect = 5.6
Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 9/81 (11%)
Query: 10 SVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIV 69
SV HP V++A L D S +N V FG T D+ + V
Sbjct: 18 SVCSAHPL---------VIEAALAFDRNSTRKVLIEATSNQVNQFGGYTGMTPADFREFV 68
Query: 70 RDTCRSIGFVSDDVGLDADHC 90
+GF + + L DH
Sbjct: 69 FAIADKVGFARERIILGGDHL 89
>d2guda1 b.77.3.1 (A:1-121) Griffithsin {Red alga (Griffithsia)
[TaxId: 35158]}
Length = 121
Score = 25.5 bits (56), Expect = 6.6
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 258 TYGGWGAHGGGAFSGKDPTKVD-RSGAYI 285
T+ +G GG FS + + RSG+Y+
Sbjct: 3 THRKFGGSGGSPFS--GLSSIAVRSGSYL 29
>d1o57a1 a.4.5.40 (A:2-74) N-terminal domain of Bacillus PurR
{Bacillus subtilis [TaxId: 1423]}
Length = 73
Score = 24.6 bits (54), Expect = 7.3
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 315 PLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFL 363
PL+ F + Y + K E L I+K++F+ + G+ T+ G +++
Sbjct: 24 PLTFFSERYESAKSSISEDLTIIKQTFEQQ-GIGTLLTVPGAAGGVKYI 71
>d1u5la_ d.6.1.1 (A:) Prion protein domain {Red-eared slider turtle
(Trachemys scripta) [TaxId: 34903]}
Length = 107
Score = 25.1 bits (55), Expect = 8.3
Identities = 8/44 (18%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 176 YYNDNGAMVPVRVHTVLISTQH--DETVTNDEIAADLKEHVIKP 217
++N+N P +V+ + + + D + + E+ I P
Sbjct: 31 WWNENSNRYPNQVYYKEYNDRSVPEGRFVRDCVNITVTEYKIDP 74
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.137 0.414
Gapped
Lambda K H
0.267 0.0407 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,561,544
Number of extensions: 76644
Number of successful extensions: 231
Number of sequences better than 10.0: 1
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 18
Length of query: 393
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 306
Effective length of database: 1,213,086
Effective search space: 371204316
Effective search space used: 371204316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)