Query 016218
Match_columns 393
No_of_seqs 138 out of 200
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 04:52:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016218.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016218hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11955 PORR: Plant organelle 100.0 1E-113 3E-118 853.4 31.1 326 58-385 1-333 (335)
2 PF11955 PORR: Plant organelle 99.1 1.2E-10 2.6E-15 117.0 6.6 141 68-209 94-293 (335)
3 PLN03196 MOC1-like protein; Pr 63.6 7.8 0.00017 41.4 3.9 23 102-125 132-154 (487)
4 PF12872 OST-HTH: OST-HTH/LOTU 57.3 34 0.00074 26.2 5.6 47 78-127 8-65 (74)
5 PF13601 HTH_34: Winged helix 39.1 38 0.00082 27.3 3.4 57 97-154 17-78 (80)
6 PLN03196 MOC1-like protein; Pr 26.3 85 0.0018 33.7 4.4 47 159-208 325-372 (487)
7 PF12045 DUF3528: Protein of u 23.1 44 0.00095 30.5 1.3 38 29-67 8-45 (143)
8 TIGR02424 TF_pcaQ pca operon t 21.8 3.5E+02 0.0076 25.6 7.3 71 135-208 57-128 (300)
9 PF04340 DUF484: Protein of un 21.5 91 0.002 29.5 3.2 43 111-153 10-60 (225)
10 PRK11716 DNA-binding transcrip 16.5 3.3E+02 0.0071 25.0 5.6 90 96-208 11-102 (269)
No 1
>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts. It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].
Probab=100.00 E-value=1.4e-113 Score=853.44 Aligned_cols=326 Identities=41% Similarity=0.682 Sum_probs=312.6
Q ss_pred CCCCchhHHHHhhccchhhHHHHHHHHhcCCCCeeehhhhhhhccccCCCCccchhHHhhhCCCceEEEc-cCCCcccee
Q 016218 58 SARIPHFESILNRDSVFRFLTKTKEFLSKQPERVLRLDDAGKLYRELGFPRGRKVVKSIQRHPLIFDVYR-HVDNKMWLG 136 (393)
Q Consensus 58 ~~Rd~~LD~~i~r~k~lr~v~~lk~li~s~P~~~lpl~~l~k~~~~Lgl~~~~~v~~FlrkyP~iF~~~~-~~~~~~~~r 136 (393)
|+||++||++|+++|+++++++|+++|+++|+++||+++|++++++||+ .++++++||+|||+||++|. +..+.+||+
T Consensus 1 w~rd~~lD~~i~~~k~l~~v~~l~~~i~~~p~~~~pl~~l~k~~~~L~l-~~~~~~~flrkyP~iF~~~~~~~~~~~~~~ 79 (335)
T PF11955_consen 1 WVRDPYLDKVIEREKRLRFVLRLKDLILSQPSHSLPLRDLSKLRRQLGL-KPRKVSRFLRKYPSIFEVFQHPSRSVPWFR 79 (335)
T ss_pred CCCchhHHHHHHhhhhHHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCC-CcccHHHHHHhCCceEEEeccCCCCCceEE
Confidence 7999999999999999999999999999999999999999999999999 45799999999999999999 567889999
Q ss_pred ccHHHHHHHHHHHHHHHhchHHHHHHHHHHhccCCCCccchhhHHhhhhhcCCChhhhhh-hhcCCCCeEEEeccCCcee
Q 016218 137 FTDFVERLLEEERSIMESMETDRVNKVRKLLMISKEKRIPLSKIYHNRLLFGIPEDFRDR-VAKFPEYFRIVVENDGKRI 215 (393)
Q Consensus 137 LT~~a~~L~~eE~~v~~~~e~~~V~rLrKLLMMS~~rrLpL~kl~~lr~dLGLP~DF~~~-v~kyP~~Frvv~~~dg~~~ 215 (393)
||++|++|++||+++++++++++|++|+||||||.+++|||++|+|++||||||+||+++ +++|||+|+||+..+|..+
T Consensus 80 LT~~a~~L~~eE~~~~~~~e~~~v~rL~KLLMMS~~~rlpL~ki~~l~~dLGLP~Df~~~lv~~yP~~Frvv~~~~~~~~ 159 (335)
T PF11955_consen 80 LTPEAEDLLREERRVREEMEPDLVERLRKLLMMSKDRRLPLSKIAHLRRDLGLPDDFRDSLVPKYPDYFRVVDLEDGGRY 159 (335)
T ss_pred eCHHHHHHHHHHHHHHHhChHHHHHHHHHHhccCCCCcccHHHHHHHHHHcCCChhhccchhhhCCCCcEEeecCCCCCE
Confidence 999999999999999999999999999999999999999999999999999999999998 7999999999997888899
Q ss_pred EEEeecCCCCcccHHHHHhhhc-----ccccccceecccCCCCCCccChhHHHHHHhhccCCCCCCCCCCCCCCCCChhh
Q 016218 216 LELVNWDPTLAVSELEREFIVN-----EDKVKKAFKFPVKYGKDLGLDESDTRKLNLLNTLPLVSPYSDGWKFDMWSLEA 290 (393)
Q Consensus 216 LELv~Wdp~LAVS~~Ek~~~~~-----~~~~~~~~~Fp~~~~~g~~l~~~~~~~l~~fQ~LPyiSPYed~~~l~~~S~e~ 290 (393)
||||+|||+||||++|++++.+ +.....+++||++||+||++++++++|+++||+|||+|||+|+++++++|+++
T Consensus 160 LeLv~Wd~~LAvs~~E~~~~~~~~~~~~~~~~~~~~Fp~~fp~G~~l~k~~~~~l~~fQ~lPy~SPYed~~~l~~~s~~~ 239 (335)
T PF11955_consen 160 LELVSWDPELAVSALEKRAEKEYREKREDGFDRPLAFPVSFPKGFRLKKKFREWLEEFQKLPYISPYEDASHLDPGSDEA 239 (335)
T ss_pred EEEeecCCccCcCccchhhhhccccccccccCCceeeeecCCCCccccHHHHHHHHHHhcCCCCCCCCCccCCCCCChHH
Confidence 9999999999999999998743 34556789999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhcccchhhhhhhHHhhHHhhCCcHHHHHHHhhCCCeEEEeeeCCceEEEEecccCCCCcccccCchhh
Q 016218 291 EKYRVGVVHEFLSLTLEKRASIHNIVEFKEEFSLTRRTYEMLKKQPRTFHLAGTEMNWAVFLKDAYGENGILIQKDPQVV 370 (393)
Q Consensus 291 EKRaVaVlHELLSLTveKr~~v~~L~~fr~efgLp~k~~~~l~rHPgIFYvS~k~~~~TVfLREAY~~~g~LIek~PL~~ 370 (393)
|||||||+||||||||||||++++|+|||+|||||++++++|+|||||||||+||+||||||||||++ |+|||||||+.
T Consensus 240 EKRaVaVlHElLSLTveKr~~~~~L~~fr~ef~lp~k~~~~l~rHPgIFYvS~kg~~~TVfLrEAY~~-~~Liek~Pl~~ 318 (335)
T PF11955_consen 240 EKRAVAVLHELLSLTVEKRTEVDHLTHFRKEFGLPQKFRRLLLRHPGIFYVSLKGKRHTVFLREAYDG-GELIEKHPLVV 318 (335)
T ss_pred HhHHHHHHHHHHHhhhhhhccHHHHHHHHHHhCCcHHHHHHHHhCCCeEEEeccCCceEEEEeeccCC-CCCCCCCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999985 79999999999
Q ss_pred HHHHHHHHHHhhccc
Q 016218 371 FNEKLCKFAQMQEGE 385 (393)
Q Consensus 371 ~reK~~~l~~~~~~~ 385 (393)
+|+||++|+.++..+
T Consensus 319 ~r~k~~~Lm~~~~~~ 333 (335)
T PF11955_consen 319 IREKFLELMQEGRRK 333 (335)
T ss_pred HHHHHHHHHhhcccc
Confidence 999999998877654
No 2
>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts. It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].
Probab=99.09 E-value=1.2e-10 Score=117.05 Aligned_cols=141 Identities=23% Similarity=0.372 Sum_probs=108.8
Q ss_pred HhhccchhhHHHHHHHHhcCCCCeeehhhhhhhccccCCCCccchhHHhhhCCCceEEEccCCCccceeccH--------
Q 016218 68 LNRDSVFRFLTKTKEFLSKQPERVLRLDDAGKLYRELGFPRGRKVVKSIQRHPLIFDVYRHVDNKMWLGFTD-------- 139 (393)
Q Consensus 68 i~r~k~lr~v~~lk~li~s~P~~~lpl~~l~k~~~~Lgl~~~~~v~~FlrkyP~iF~~~~~~~~~~~~rLT~-------- 139 (393)
+-.+...-.|.+|+.+|+-+.+++||++.+..++..||||.+ -..+++.+||+.|.+.....+..++.|..
T Consensus 94 ~~~~~e~~~v~rL~KLLMMS~~~rlpL~ki~~l~~dLGLP~D-f~~~lv~~yP~~Frvv~~~~~~~~LeLv~Wd~~LAvs 172 (335)
T PF11955_consen 94 VREEMEPDLVERLRKLLMMSKDRRLPLSKIAHLRRDLGLPDD-FRDSLVPKYPDYFRVVDLEDGGRYLELVSWDPELAVS 172 (335)
T ss_pred HHHhChHHHHHHHHHHhccCCCCcccHHHHHHHHHHcCCChh-hccchhhhCCCCcEEeecCCCCCEEEEeecCCccCcC
Confidence 444445678999999999999999999999999999999986 56789999999999876322222221111
Q ss_pred -----------------------------HHH-------HHHHHHHHH---------------HHhchHHHHHHHHHHhc
Q 016218 140 -----------------------------FVE-------RLLEEERSI---------------MESMETDRVNKVRKLLM 168 (393)
Q Consensus 140 -----------------------------~a~-------~L~~eE~~v---------------~~~~e~~~V~rLrKLLM 168 (393)
.+- +-+.+=+++ -.++|..+|..++.||.
T Consensus 173 ~~E~~~~~~~~~~~~~~~~~~~~Fp~~fp~G~~l~k~~~~~l~~fQ~lPy~SPYed~~~l~~~s~~~EKRaVaVlHElLS 252 (335)
T PF11955_consen 173 ALEKRAEKEYREKREDGFDRPLAFPVSFPKGFRLKKKFREWLEEFQKLPYISPYEDASHLDPGSDEAEKRAVAVLHELLS 252 (335)
T ss_pred ccchhhhhccccccccccCCceeeeecCCCCccccHHHHHHHHHHhcCCCCCCCCCccCCCCCChHHHhHHHHHHHHHHH
Confidence 111 111110110 12467889999999999
Q ss_pred cCCCCccchhhHHhhhhhcCCChhhhhhhhcCCCCeEEEec
Q 016218 169 ISKEKRIPLSKIYHNRLLFGIPEDFRDRVAKFPEYFRIVVE 209 (393)
Q Consensus 169 MS~~rrLpL~kl~~lr~dLGLP~DF~~~v~kyP~~Frvv~~ 209 (393)
|+.++++.+.+|.|++.+||||.+|...+.+||+.|.|...
T Consensus 253 LTveKr~~~~~L~~fr~ef~lp~k~~~~l~rHPgIFYvS~k 293 (335)
T PF11955_consen 253 LTVEKRTEVDHLTHFRKEFGLPQKFRRLLLRHPGIFYVSLK 293 (335)
T ss_pred hhhhhhccHHHHHHHHHHhCCcHHHHHHHHhCCCeEEEecc
Confidence 99999999999999999999999999999999999999853
No 3
>PLN03196 MOC1-like protein; Provisional
Probab=63.60 E-value=7.8 Score=41.43 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=18.6
Q ss_pred cccCCCCccchhHHhhhCCCceEE
Q 016218 102 RELGFPRGRKVVKSIQRHPLIFDV 125 (393)
Q Consensus 102 ~~Lgl~~~~~v~~FlrkyP~iF~~ 125 (393)
+.+|++. ..+...|.+||.|..-
T Consensus 132 ~~lG~s~-~~i~~lI~~~P~lL~~ 154 (487)
T PLN03196 132 EKLGVTR-SSLPELLRRYPQVLHA 154 (487)
T ss_pred HHcCCCH-HHHHHHHHhCCceecc
Confidence 5789975 4788999999999873
No 4
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=57.34 E-value=34 Score=26.21 Aligned_cols=47 Identities=21% Similarity=0.427 Sum_probs=33.2
Q ss_pred HHHHHHHhcCCC--Ceeehhhhhhhc---------cccCCCCccchhHHhhhCCCceEEEc
Q 016218 78 TKTKEFLSKQPE--RVLRLDDAGKLY---------RELGFPRGRKVVKSIQRHPLIFDVYR 127 (393)
Q Consensus 78 ~~lk~li~s~P~--~~lpl~~l~k~~---------~~Lgl~~~~~v~~FlrkyP~iF~~~~ 127 (393)
-.|.++|.+.++ +.++++.+...- +.+|+. ++..||+..|++|++-.
T Consensus 8 ~~l~~ll~~~~~~~g~v~ls~l~~~~~~~~~~f~~~~yG~~---~l~~ll~~~~~~~~i~~ 65 (74)
T PF12872_consen 8 KLLRELLESQKGEDGWVSLSQLGQEYKKKYPDFDPRDYGFS---SLSELLESLPDVVEIEE 65 (74)
T ss_dssp HHHHHHHHHTCTTTSSEEHHHHHHHHHHHHTT--TCCTTSS---SHHHHHHT-TTTEEEEE
T ss_pred HHHHHHHHhCcCCCceEEHHHHHHHHHHHCCCCCccccCCC---cHHHHHHhCCCeEEEee
Confidence 356777756554 478998776552 456775 78999999999999843
No 5
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A.
Probab=39.09 E-value=38 Score=27.33 Aligned_cols=57 Identities=18% Similarity=0.313 Sum_probs=32.9
Q ss_pred hhhhccccCCCCccchhHHhhh---CC--CceEEEccCCCccceeccHHHHHHHHHHHHHHHh
Q 016218 97 AGKLYRELGFPRGRKVVKSIQR---HP--LIFDVYRHVDNKMWLGFTDFVERLLEEERSIMES 154 (393)
Q Consensus 97 l~k~~~~Lgl~~~~~v~~Flrk---yP--~iF~~~~~~~~~~~~rLT~~a~~L~~eE~~v~~~ 154 (393)
++.+++.+|++++ .+..-|++ .- .+-..+.+....-|+++|++|.+...+-.+.+++
T Consensus 17 f~~L~~~l~lt~g-~Ls~hL~~Le~~GyV~~~k~~~~~~p~t~~~lT~~Gr~~~~~~~~~L~~ 78 (80)
T PF13601_consen 17 FSELKEELGLTDG-NLSKHLKKLEEAGYVEVEKEFEGRRPRTWYSLTDKGREAFERYVAALRE 78 (80)
T ss_dssp HHHHHHHTT--HH-HHHHHHHHHHHTTSEEEEEE-SSS--EEEEEE-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcCHH-HHHHHHHHHHHCCCEEEEEeccCCCCeEEEEECHHHHHHHHHHHHHHHH
Confidence 3456888999865 55555443 22 2223344444566999999999999988776653
No 6
>PLN03196 MOC1-like protein; Provisional
Probab=26.26 E-value=85 Score=33.70 Aligned_cols=47 Identities=13% Similarity=0.268 Sum_probs=33.7
Q ss_pred HHHHHHHHhccCCCCccchhhHHhhhhhcCCChhhhhh-hhcCCCCeEEEe
Q 016218 159 RVNKVRKLLMISKEKRIPLSKIYHNRLLFGIPEDFRDR-VAKFPEYFRIVV 208 (393)
Q Consensus 159 ~V~rLrKLLMMS~~rrLpL~kl~~lr~dLGLP~DF~~~-v~kyP~~Frvv~ 208 (393)
++.+.-.++.+|.++. ..+++-++ .+|+.++-... +.++|+.+....
T Consensus 325 ~v~k~P~il~lSe~kl--~~kvefL~-~~Gls~edI~~mv~k~P~lL~~S~ 372 (487)
T PLN03196 325 VIEKLPQIVSLNRNVA--LKHVEFLR-GRGFSAQDVAKMVVRCPQILALNL 372 (487)
T ss_pred HHHhcchhhcccHHHH--HHHHHHHH-HcCCCHHHHHHHHHhCCceeeccH
Confidence 4556666777776542 35777776 49999877765 799999998853
No 7
>PF12045 DUF3528: Protein of unknown function (DUF3528); InterPro: IPR021918 This domain of unknown function is found at the N terminus of some Homeobox proteins belonging to the ABD-B family. It is found in association with PF00046 from PFAM.
Probab=23.09 E-value=44 Score=30.48 Aligned_cols=38 Identities=18% Similarity=0.168 Sum_probs=27.0
Q ss_pred ccccccChhhhhhccCCCCCCCCCCCCCCCCCCchhHHH
Q 016218 29 SFLVTKIPKRLRKKHKKPDSPRTRPVQPDSARIPHFESI 67 (393)
Q Consensus 29 ~~~~~~~~~~~~~~~k~~~s~r~~~~~~~~~Rd~~LD~~ 67 (393)
|||+ .+.+.|=---=..+=|++.||.+..-||.+||..
T Consensus 8 sFLp-q~sS~~mtypYsSNLpQVqpVREVaFRDYgld~s 45 (143)
T PF12045_consen 8 SFLP-QPSSCQMTYPYSSNLPQVQPVREVAFRDYGLDPS 45 (143)
T ss_pred cccC-CCCCCccccccCCCccccCccceecchhcccCcc
Confidence 6666 5555555444445558888988888999998874
No 8
>TIGR02424 TF_pcaQ pca operon transcription factor PcaQ. Members of this family are LysR-family transcription factors associated with operons for catabolism of protocatechuate. Members occur only in Proteobacteria.
Probab=21.85 E-value=3.5e+02 Score=25.60 Aligned_cols=71 Identities=15% Similarity=0.278 Sum_probs=43.2
Q ss_pred eeccHHHHHHHHHHHHHHHhchHHHHHHHHHHhccCCCCccchhhHHhhhhhcCCChhhhhhhhcCCCC-eEEEe
Q 016218 135 LGFTDFVERLLEEERSIMESMETDRVNKVRKLLMISKEKRIPLSKIYHNRLLFGIPEDFRDRVAKFPEY-FRIVV 208 (393)
Q Consensus 135 ~rLT~~a~~L~~eE~~v~~~~e~~~V~rLrKLLMMS~~rrLpL~kl~~lr~dLGLP~DF~~~v~kyP~~-Frvv~ 208 (393)
+.||+.|+.++..=+.++++.+.. ...+..+ .-...+.|.+.....+-..+ +|+-......+||+. |++..
T Consensus 57 ~~lT~~G~~l~~~a~~~l~~~~~~-~~~~~~~-~~~~~~~l~I~~~~~~~~~~-~~~~l~~~~~~~P~~~i~~~~ 128 (300)
T TIGR02424 57 IRLTRYGELFLRHAGASLAALRQG-VASLSQL-GEGEGPTVRIGALPTVAARL-MPEVVKRFLARAPRLRVRIMT 128 (300)
T ss_pred ccccHhHHHHHHHHHHHHHHHHHH-HHHHHHh-cCCCCceEEEecccHHHHhh-hHHHHHHHHHhCCCcEEEEEe
Confidence 799999999999988888765542 2333332 23445666664443332222 343333334789997 88875
No 9
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=21.49 E-value=91 Score=29.54 Aligned_cols=43 Identities=16% Similarity=0.187 Sum_probs=13.5
Q ss_pred chhHHhhhCCCceEEEcc-------C-CCccceeccHHHHHHHHHHHHHHH
Q 016218 111 KVVKSIQRHPLIFDVYRH-------V-DNKMWLGFTDFVERLLEEERSIME 153 (393)
Q Consensus 111 ~v~~FlrkyP~iF~~~~~-------~-~~~~~~rLT~~a~~L~~eE~~v~~ 153 (393)
.|.+||+++|..|..+.+ + ...--+.|.+...+.++++-+-++
T Consensus 10 ~V~~yL~~~PdFf~~~~~ll~~l~~ph~~~~avSL~erQ~~~LR~~~~~L~ 60 (225)
T PF04340_consen 10 DVAAYLRQHPDFFERHPELLAELRLPHPSGGAVSLVERQLERLRERNRQLE 60 (225)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHhCHHHHHHcCCCCCCCCcccHHHHHHHHHHHHHHHHH
Confidence 678899999999987652 1 111257777777777777655444
No 10
>PRK11716 DNA-binding transcriptional regulator IlvY; Provisional
Probab=16.47 E-value=3.3e+02 Score=24.98 Aligned_cols=90 Identities=17% Similarity=0.132 Sum_probs=51.9
Q ss_pred hhhhhccccCCCCccchhHHhhhCCCceEEEccCCCccceeccHHHHHHHHHHHHHHHhchHHHHHHHHHHhccCCCCcc
Q 016218 96 DAGKLYRELGFPRGRKVVKSIQRHPLIFDVYRHVDNKMWLGFTDFVERLLEEERSIMESMETDRVNKVRKLLMISKEKRI 175 (393)
Q Consensus 96 ~l~k~~~~Lgl~~~~~v~~FlrkyP~iF~~~~~~~~~~~~rLT~~a~~L~~eE~~v~~~~e~~~V~rLrKLLMMS~~rrL 175 (393)
.+.++.++||.+ +|+- .+. -+.||++|+.|+..=+.+++..+.. .+.++. .--+..+.+
T Consensus 11 ~I~~LE~~lg~~--------------Lf~R--~~r---~~~lT~~G~~l~~~a~~~l~~~~~~-~~~~~~-~~~~~~~~l 69 (269)
T PRK11716 11 QIQRLEEELGQP--------------LFVR--DNR---SVTLTEAGEELRPFAQQTLLQWQQL-RHTLDQ-QGPSLSGEL 69 (269)
T ss_pred HHHHHHHHhCCe--------------eEEe--cCC---ceeECHhHHHHHHHHHHHHHHHHHH-HHHHHh-hccccCceE
Confidence 456788888875 4442 111 2899999999999988887764432 233332 222445556
Q ss_pred chhhHHhhhhhcCCChhhhh-hhhcCCCC-eEEEe
Q 016218 176 PLSKIYHNRLLFGIPEDFRD-RVAKFPEY-FRIVV 208 (393)
Q Consensus 176 pL~kl~~lr~dLGLP~DF~~-~v~kyP~~-Frvv~ 208 (393)
.+.....+-..+ +| ++.. ...+||+. +.+..
T Consensus 70 ~I~~~~~~~~~~-~~-~~l~~~~~~~p~i~l~i~~ 102 (269)
T PRK11716 70 SLFCSVTAAYSH-LP-PILDRFRAEHPLVEIKLTT 102 (269)
T ss_pred EEEecchHHHHH-HH-HHHHHHHHHCCCeEEEEEE
Confidence 654433332211 22 3333 34789986 67664
Done!