Query 016218
Match_columns 393
No_of_seqs 138 out of 200
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 09:53:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016218.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016218hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3broa1 a.4.5.28 (A:3-137) Tra 25.8 67 0.0048 24.0 6.2 86 64-153 18-107 (135)
2 d3ctaa1 a.4.5.28 (A:5-89) Ta10 23.7 26 0.0019 25.4 3.1 71 76-152 6-79 (85)
3 d2icga1 d.369.1.1 (A:1-158) Un 17.0 50 0.0036 25.7 3.7 43 159-201 5-54 (158)
4 d1sfka_ a.190.1.1 (A:) Flavivi 16.7 23 0.0017 25.9 1.3 19 305-323 47-65 (73)
5 d2a61a1 a.4.5.28 (A:5-143) Tra 16.1 76 0.0055 23.9 4.5 69 81-154 36-107 (139)
6 d1p4xa1 a.4.5.28 (A:1-125) Sta 11.8 2.7E+02 0.02 20.4 7.7 70 80-153 39-112 (125)
7 d1m53a1 b.71.1.1 (A:521-598) I 9.3 78 0.0057 21.6 2.2 33 193-225 3-35 (78)
8 d2grga1 d.110.10.1 (A:1-98) Un 9.1 35 0.0026 26.1 0.2 34 355-388 19-54 (98)
9 d1pvda2 c.36.1.5 (A:2-181) Pyr 8.3 16 0.0012 29.8 -2.4 39 319-357 19-61 (180)
10 d1gpma1 c.26.2.1 (A:208-404) G 8.0 86 0.0062 23.8 2.2 23 311-336 173-195 (197)
No 1
>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}
Probab=25.78 E-value=67 Score=23.98 Aligned_cols=86 Identities=13% Similarity=0.164 Sum_probs=52.5
Q ss_pred hHHHHhhccchhhHHHHHHHHhcCCCCeeehhhhhhhccccCCCCccchh---HHhhhCCCceEEEcc-CCCccceeccH
Q 016218 64 FESILNRDSVFRFLTKTKEFLSKQPERVLRLDDAGKLYRELGFPRGRKVV---KSIQRHPLIFDVYRH-VDNKMWLGFTD 139 (393)
Q Consensus 64 LD~~i~r~k~lr~v~~lk~li~s~P~~~lpl~~l~k~~~~Lgl~~~~~v~---~FlrkyP~iF~~~~~-~~~~~~~rLT~ 139 (393)
+|..+...---..-..+-.+|..+|++.++..+| .+.+|+... .+. .-|.+---|-..... ......+.||+
T Consensus 18 ~~~~l~~~glt~~q~~vL~~l~~~~~~~it~~el---a~~~~~~~~-~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~ 93 (135)
T d3broa1 18 FDIFAKKYDLTGTQMTIIDYLSRNKNKEVLQRDL---ESEFSIKSS-TATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTK 93 (135)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHTTTSCCBHHHH---HHHHTCCHH-HHHHHHHHHHHTTSEEEEECSSCTTSEEEEECH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHcCCCCCCHHHH---HHHHCcCHh-HHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccH
Confidence 3444433322223345566777789888888664 666787643 344 344455555554433 34567899999
Q ss_pred HHHHHHHHHHHHHH
Q 016218 140 FVERLLEEERSIME 153 (393)
Q Consensus 140 ~a~~L~~eE~~v~~ 153 (393)
+|.+++++=.....
T Consensus 94 ~G~~~~~~~~~~~~ 107 (135)
T d3broa1 94 KANKLETIILSYMD 107 (135)
T ss_dssp HHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999887555444
No 2
>d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]}
Probab=23.72 E-value=26 Score=25.38 Aligned_cols=71 Identities=18% Similarity=0.087 Sum_probs=41.3
Q ss_pred hHHHHHHHHhcCCCCeeehhhhhhhccccCCCCccchhHHhhhC---CCceEEEccCCCccceeccHHHHHHHHHHHHHH
Q 016218 76 FLTKTKEFLSKQPERVLRLDDAGKLYRELGFPRGRKVVKSIQRH---PLIFDVYRHVDNKMWLGFTDFVERLLEEERSIM 152 (393)
Q Consensus 76 ~v~~lk~li~s~P~~~lpl~~l~k~~~~Lgl~~~~~v~~Flrky---P~iF~~~~~~~~~~~~rLT~~a~~L~~eE~~v~ 152 (393)
.+..|.++-....+..|+..+ +.+.+|+..+ .+.+.|.+- --|-. ...+..-++.||++|.+++.++..-+
T Consensus 6 ~l~~l~~~~~~~~~~~lt~~e---La~~l~i~~~-~vs~~l~~Le~~GlV~r--~~D~R~~~i~LT~~G~~~l~~~~~~~ 79 (85)
T d3ctaa1 6 AIKKIKEAAEASNRAYLTSSK---LADMLGISQQ-SASRIIIDLEKNGYITR--TVTKRGQILNITEKGLDVLYTEFADL 79 (85)
T ss_dssp HHHHHHHHTTTSSEEECCHHH---HHHHHTSCHH-HHHHHHHHHHHTTSEEE--EEETTEEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccCCCCCCHHH---HHHHHCCCHH-HHHHHHHHHHHCCCeee--ecccccccceECHHHHHHHHHHHHHH
Confidence 334444433333344566655 5777888754 566655442 22221 22345567999999999998876443
No 3
>d2icga1 d.369.1.1 (A:1-158) Uncharacterized protein Lin2918 {Listeria innocua [TaxId: 1642]}
Probab=17.00 E-value=50 Score=25.71 Aligned_cols=43 Identities=19% Similarity=0.245 Sum_probs=30.8
Q ss_pred HHHHHHHHhccCC-----CCccchhhHHhhhhhcC--CChhhhhhhhcCC
Q 016218 159 RVNKVRKLLMISK-----EKRIPLSKIYHNRLLFG--IPEDFRDRVAKFP 201 (393)
Q Consensus 159 ~V~rLrKLLMMS~-----~rrLpL~kl~~lr~dLG--LP~DF~~~v~kyP 201 (393)
..++|.|++-.+. .....-..|..+...|| ||+||+..+.+|=
T Consensus 5 ~~e~~~~~~~~~~~~~~~~~~at~E~I~~~E~~LG~~lP~~Yr~fL~~~n 54 (158)
T d2icga1 5 FLEEVDRLITLSGITFHASGTGTPELIKIYQDALGNEFPETYKLFLEKYG 54 (158)
T ss_dssp HHHHHHHHHHHCCSCCBCCCCCCHHHHHHHHHHHTCCCCHHHHHHHHHTS
T ss_pred HHHHHHHHHHhcCCccccCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHcC
Confidence 3445555554443 34467788999999999 7999999877664
No 4
>d1sfka_ a.190.1.1 (A:) Flavivirus capsid protein C {Kunjin virus [TaxId: 11077]}
Probab=16.67 E-value=23 Score=25.91 Aligned_cols=19 Identities=21% Similarity=0.651 Sum_probs=17.5
Q ss_pred ccchhhhhhhHHhhHHhhC
Q 016218 305 TLEKRASIHNIVEFKEEFS 323 (393)
Q Consensus 305 TveKr~~v~~L~~fr~efg 323 (393)
+|+|...+.+|..|++|.|
T Consensus 47 ~v~K~~A~k~L~~FKKeig 65 (73)
T d1sfka_ 47 SVNKQTAMKHLLSFKKELG 65 (73)
T ss_dssp TSCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHH
Confidence 6889999999999999987
No 5
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}
Probab=16.05 E-value=76 Score=23.88 Aligned_cols=69 Identities=17% Similarity=0.125 Sum_probs=41.6
Q ss_pred HHHHhcCCCCeeehhhhhhhccccCCCCcc--chhHHhhhCCCceEEEcc-CCCccceeccHHHHHHHHHHHHHHHh
Q 016218 81 KEFLSKQPERVLRLDDAGKLYRELGFPRGR--KVVKSIQRHPLIFDVYRH-VDNKMWLGFTDFVERLLEEERSIMES 154 (393)
Q Consensus 81 k~li~s~P~~~lpl~~l~k~~~~Lgl~~~~--~v~~FlrkyP~iF~~~~~-~~~~~~~rLT~~a~~L~~eE~~v~~~ 154 (393)
-..|...|+ +++ +.+.+.+|++.+. +++.-|.+---|-..-.. .....++.||+.|.+++.+=......
T Consensus 36 L~~i~~~~~--~t~---~~la~~l~i~~~tvs~~l~~L~~~gli~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~~~~ 107 (139)
T d2a61a1 36 LQKIYFEGP--KRP---GELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEKVIERREN 107 (139)
T ss_dssp HHHHHHHCC--BCH---HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC--CCH---HHHHHHhCCCcccchHHHHHHHhcCeeeeeeccCCCCeEEEEECHHHHHHHHHHHHHHHH
Confidence 334444443 354 4467789998642 234444455555554332 34567899999999998876555554
No 6
>d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}
Probab=11.82 E-value=2.7e+02 Score=20.44 Aligned_cols=70 Identities=16% Similarity=0.337 Sum_probs=41.8
Q ss_pred HHHHHhcCCCCeeehhhhhhhccccCCCCccchhHHhh---hCCCceEEEc-cCCCccceeccHHHHHHHHHHHHHHH
Q 016218 80 TKEFLSKQPERVLRLDDAGKLYRELGFPRGRKVVKSIQ---RHPLIFDVYR-HVDNKMWLGFTDFVERLLEEERSIME 153 (393)
Q Consensus 80 lk~li~s~P~~~lpl~~l~k~~~~Lgl~~~~~v~~Flr---kyP~iF~~~~-~~~~~~~~rLT~~a~~L~~eE~~v~~ 153 (393)
+-..|...|++.+++.+ +.+.+|+... .+...|. +---|=..-. .....-.+.||++|.+++.+-...++
T Consensus 39 iL~~l~~~~~~~~t~~e---ia~~~~~~~~-~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~~~~~~~~~~~~ 112 (125)
T d1p4xa1 39 LLTYLFHQQENTLPFKK---IVSDLCYKQS-DLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKIAERVTLFD 112 (125)
T ss_dssp HHHHHHSCSCSEEEHHH---HHHHSSSCGG-GTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCcCHHH---HHHHhCCCcc-hHHHHHHHHHHCCCceeecccCCCCeEEEEECHHHHHHHHHHHHHHH
Confidence 34456667777788755 5667787653 4444333 3333322222 23456789999999998876544443
No 7
>d1m53a1 b.71.1.1 (A:521-598) Isomaltulose synthase PalI {Klebsiella sp., lx3 [TaxId: 576]}
Probab=9.27 E-value=78 Score=21.59 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=25.8
Q ss_pred hhhhhhcCCCCeEEEeccCCceeEEEeecCCCC
Q 016218 193 FRDRVAKFPEYFRIVVENDGKRILELVNWDPTL 225 (393)
Q Consensus 193 F~~~v~kyP~~Frvv~~~dg~~~LELv~Wdp~L 225 (393)
|+...+.+|+.|-.....++.+.|-+.++.++-
T Consensus 3 y~~l~~~~~~v~aY~R~~~~~~~lVv~NfS~~~ 35 (78)
T d1m53a1 3 YQDLNPQDNTVYAYTRTLGNERYLVVVNFKEYP 35 (78)
T ss_dssp EEESCTTCSSEEEEEEEETTEEEEEEEECSSSC
T ss_pred eEEccCCCCcEEEEEEEcCCeEEEEEEeCCCCC
Confidence 443347899999999988888889888876543
No 8
>d2grga1 d.110.10.1 (A:1-98) Uncharacterized protein YNR034W-A {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.12 E-value=35 Score=26.08 Aligned_cols=34 Identities=12% Similarity=0.186 Sum_probs=25.4
Q ss_pred ccCCCCcccccCchhhH--HHHHHHHHHhhcccccc
Q 016218 355 AYGENGILIQKDPQVVF--NEKLCKFAQMQEGEVVS 388 (393)
Q Consensus 355 AY~~~g~LIek~PL~~~--reK~~~l~~~~~~~~~~ 388 (393)
|++++++|||-.-+-.. |++....+++++++++.
T Consensus 19 aFDen~nliessGIg~~i~K~rveDI~~lS~~eld~ 54 (98)
T d2grga1 19 TFDENYNLLDTSGVAKVIEKSPIAEIIRKSNAELGR 54 (98)
T ss_dssp EECTTSCEEEEEEGGGTSCCTTHHHHHHHHHHHCSS
T ss_pred EEcCCCCEEeecccccccchhhHHHHHHHhhhhhcc
Confidence 57777888887777655 67777788888888763
No 9
>d1pvda2 c.36.1.5 (A:2-181) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.26 E-value=16 Score=29.81 Aligned_cols=39 Identities=13% Similarity=0.124 Sum_probs=32.3
Q ss_pred HHhhCCc----HHHHHHHhhCCCeEEEeeeCCceEEEEecccC
Q 016218 319 KEEFSLT----RRTYEMLKKQPRTFHLAGTEMNWAVFLKDAYG 357 (393)
Q Consensus 319 r~efgLp----~k~~~~l~rHPgIFYvS~k~~~~TVfLREAY~ 357 (393)
+.-||+| ..+.+.|.+++||-|++.+..+..+|.=+||.
T Consensus 19 ~~vFgipG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gya 61 (180)
T d1pvda2 19 NTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYA 61 (180)
T ss_dssp CEEEECCCTTTHHHHHGGGGSTTCEECCCSCHHHHHHHHHHHH
T ss_pred CEEEEeCCccHHHHHHHHHHhcceEEeeecccchhhHHHHHHh
Confidence 3457888 67788889999999999998888888888884
No 10
>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain {Escherichia coli [TaxId: 562]}
Probab=7.97 E-value=86 Score=23.78 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=18.4
Q ss_pred hhhhHHhhHHhhCCcHHHHHHHhhCC
Q 016218 311 SIHNIVEFKEEFSLTRRTYEMLKKQP 336 (393)
Q Consensus 311 ~v~~L~~fr~efgLp~k~~~~l~rHP 336 (393)
..+.+..+.+++|||..+ +.|||
T Consensus 173 ~K~eV~~lA~~lglP~~i---~~~~p 195 (197)
T d1gpma1 173 FKDEVRKIGLELGLPYDM---LYRHP 195 (197)
T ss_dssp CHHHHHHHHHHTTCCHHH---HTSCC
T ss_pred cHHHHHHHHHHcCCCHHH---hCCCC
Confidence 456788899999999984 47887
Done!